Query 008242
Match_columns 573
No_of_seqs 218 out of 1618
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 21:18:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0228 Beta-fructofuranosidas 100.0 2E-111 5E-116 870.8 39.4 562 5-571 8-571 (571)
2 COG1621 SacC Beta-fructosidase 100.0 8.8E-98 2E-102 793.1 46.1 457 32-569 15-486 (486)
3 TIGR01322 scrB_fam sucrose-6-p 100.0 7.8E-90 1.7E-94 746.3 47.3 417 39-538 7-445 (445)
4 smart00640 Glyco_32 Glycosyl h 100.0 1.4E-85 3.1E-90 711.1 48.9 422 50-527 1-437 (437)
5 PF00251 Glyco_hydro_32N: Glyc 100.0 1.2E-74 2.6E-79 599.6 26.3 300 50-369 1-308 (308)
6 cd08996 GH32_B_Fructosidase Gl 100.0 2.9E-66 6.4E-71 534.5 33.6 286 56-372 1-298 (298)
7 cd08995 GH32_Aec43_like Glycos 100.0 9.5E-55 2.1E-59 445.0 29.6 267 59-363 1-279 (280)
8 cd08979 GH_J Glycosyl hydrolas 100.0 7E-38 1.5E-42 318.2 27.5 243 59-335 7-264 (276)
9 cd08772 GH43_62_32_68 Glycosyl 100.0 2.7E-35 5.8E-40 299.9 27.3 269 59-356 1-285 (286)
10 cd08997 GH68 Glycosyl hydrolas 99.9 5.7E-25 1.2E-29 228.3 29.6 269 59-359 8-342 (349)
11 cd08994 GH43_like_2 Glycosyl h 99.9 2E-22 4.3E-27 207.4 19.7 192 48-248 3-282 (291)
12 cd08993 GH43_DUF377 Glycosyl h 99.8 2.2E-19 4.8E-24 182.7 18.9 148 60-228 2-156 (268)
13 cd09004 GH43_bXyl Glycosyl hyd 99.8 1.1E-18 2.4E-23 178.2 20.1 191 55-283 5-197 (275)
14 cd08984 GH43_5 Glycosyl hydrol 99.8 2.4E-18 5.3E-23 177.5 21.3 162 58-248 79-246 (294)
15 cd08999 GH43_ABN_2 Glycosyl hy 99.8 4.4E-17 9.5E-22 167.1 21.1 186 56-274 6-200 (287)
16 cd08990 GH43_AXH_like Glycosyl 99.7 6.9E-16 1.5E-20 157.5 20.1 195 60-283 2-206 (274)
17 cd08978 GH_F Glycosyl hydrolas 99.6 1.1E-14 2.3E-19 147.5 20.0 191 60-283 2-201 (271)
18 cd08992 GH43_like_1 Glycosyl h 99.6 1.4E-14 3.1E-19 150.6 18.5 173 46-226 24-241 (349)
19 cd08991 GH43_bXyl_2 Glycosyl h 99.6 3E-14 6.4E-19 146.8 20.8 179 60-273 2-203 (294)
20 cd08984 GH43_5 Glycosyl hydrol 99.6 1.8E-13 3.8E-18 141.3 20.5 169 58-248 11-193 (294)
21 cd08998 GH43_ABN_1 Glycosyl hy 99.6 2.2E-13 4.8E-18 140.1 20.0 179 58-273 1-192 (288)
22 cd08985 GH43_6 Glycosyl hydrol 99.5 7.4E-12 1.6E-16 127.3 21.2 190 59-284 4-203 (265)
23 cd09000 GH43_XYL_1 Glycosyl hy 99.4 1.9E-11 4.1E-16 125.8 18.9 178 56-273 6-196 (288)
24 PF08244 Glyco_hydro_32C: Glyc 99.4 1.4E-12 3.1E-17 109.5 8.7 75 444-527 9-86 (86)
25 PF04041 DUF377: Domain of unk 99.4 3.1E-12 6.7E-17 132.8 12.4 165 59-241 33-201 (312)
26 cd08983 GH43_4 Glycosyl hydrol 99.4 8.3E-11 1.8E-15 120.4 21.9 183 56-272 16-206 (276)
27 cd09003 GH43_AXH_1 Glycosyl hy 99.4 3.6E-11 7.9E-16 125.1 19.6 187 56-273 7-215 (311)
28 PF04616 Glyco_hydro_43: Glyco 99.3 6.8E-11 1.5E-15 121.0 18.9 183 56-274 8-200 (286)
29 cd08981 GH43_2 Glycosyl hydrol 99.3 3E-10 6.4E-15 117.1 20.2 136 55-204 3-142 (291)
30 cd08979 GH_J Glycosyl hydrolas 99.3 7.7E-11 1.7E-15 119.6 15.6 137 56-205 64-209 (276)
31 cd08988 GH43_ABN Glycosyl hydr 99.2 4.1E-10 8.9E-15 115.4 19.5 180 59-273 1-193 (279)
32 cd08992 GH43_like_1 Glycosyl h 99.2 4.4E-10 9.6E-15 117.3 18.9 170 58-248 112-310 (349)
33 cd08989 GH43_XYL Glycosyl hydr 99.1 3.8E-09 8.3E-14 107.7 18.8 174 56-274 6-190 (269)
34 cd08986 GH43_7 Glycosyl hydrol 99.1 3.9E-09 8.4E-14 107.7 18.0 179 57-273 1-202 (269)
35 cd09001 GH43_XYL_2 Glycosyl hy 99.1 3.6E-09 7.8E-14 107.9 17.7 170 56-274 9-192 (269)
36 cd08980 GH43_1 Glycosyl hydrol 99.0 1.2E-08 2.6E-13 104.9 18.4 188 60-284 2-205 (288)
37 cd08993 GH43_DUF377 Glycosyl h 99.0 5.7E-09 1.2E-13 106.3 14.1 100 120-228 2-103 (268)
38 cd09002 GH43_XYL_3 Glycosyl hy 99.0 2.6E-08 5.6E-13 102.2 17.5 170 57-274 14-191 (280)
39 COG2152 Predicted glycosylase 98.9 2.5E-08 5.5E-13 100.1 15.3 151 58-231 31-193 (314)
40 PF02435 Glyco_hydro_68: Levan 98.8 1.5E-07 3.2E-12 99.7 16.9 201 52-271 50-317 (428)
41 cd08982 GH43_3 Glycosyl hydrol 98.8 3.9E-07 8.4E-12 94.2 18.9 169 59-283 4-190 (295)
42 cd08987 GH62 Glycosyl hydrolas 98.7 5.8E-07 1.3E-11 90.6 17.3 190 51-283 14-217 (303)
43 cd08994 GH43_like_2 Glycosyl h 98.7 1.7E-07 3.6E-12 96.6 12.5 108 59-171 81-198 (291)
44 cd08995 GH32_Aec43_like Glycos 98.7 5.4E-07 1.2E-11 92.2 16.0 133 58-206 62-201 (280)
45 cd08999 GH43_ABN_2 Glycosyl hy 98.6 1.4E-06 2.9E-11 89.4 16.8 156 57-228 61-227 (287)
46 cd08990 GH43_AXH_like Glycosyl 98.6 3E-06 6.5E-11 86.5 19.1 155 55-230 61-220 (274)
47 cd08991 GH43_bXyl_2 Glycosyl h 98.6 7E-06 1.5E-10 84.6 20.3 157 56-226 53-227 (294)
48 cd08978 GH_F Glycosyl hydrolas 98.5 2.5E-06 5.4E-11 86.2 16.3 157 55-227 56-216 (271)
49 PF04041 DUF377: Domain of unk 98.5 1.5E-06 3.2E-11 90.5 14.1 103 115-228 29-134 (312)
50 cd08772 GH43_62_32_68 Glycosyl 98.4 7.1E-06 1.5E-10 83.3 15.8 157 56-226 58-224 (286)
51 cd08983 GH43_4 Glycosyl hydrol 98.3 2.7E-06 5.9E-11 87.1 9.3 89 167-273 5-99 (276)
52 cd08986 GH43_7 Glycosyl hydrol 98.3 8.6E-06 1.9E-10 83.1 12.6 121 184-329 2-147 (269)
53 cd08996 GH32_B_Fructosidase Gl 98.2 1.5E-05 3.4E-10 82.2 12.9 133 60-206 65-202 (298)
54 cd08998 GH43_ABN_1 Glycosyl hy 98.2 4.6E-05 9.9E-10 78.4 16.1 154 55-224 55-217 (288)
55 cd08989 GH43_XYL Glycosyl hydr 98.1 3.1E-05 6.8E-10 79.0 13.4 71 184-273 8-87 (269)
56 cd08981 GH43_2 Glycosyl hydrol 98.1 4.3E-05 9.4E-10 78.9 13.8 77 182-273 4-87 (291)
57 cd09002 GH43_XYL_3 Glycosyl hy 98.1 4.9E-05 1.1E-09 78.0 14.0 78 167-273 7-84 (280)
58 cd09004 GH43_bXyl Glycosyl hyd 98.1 0.0002 4.2E-09 73.2 17.9 141 58-228 66-213 (275)
59 cd08985 GH43_6 Glycosyl hydrol 98.0 0.00054 1.2E-08 69.8 18.8 147 56-228 63-214 (265)
60 cd08997 GH68 Glycosyl hydrolas 97.9 0.00017 3.8E-09 75.7 14.8 148 67-225 80-284 (349)
61 TIGR01322 scrB_fam sucrose-6-p 97.9 9.7E-05 2.1E-09 80.9 13.4 135 60-205 88-225 (445)
62 PF04616 Glyco_hydro_43: Glyco 97.9 7.8E-05 1.7E-09 76.1 11.6 149 61-226 70-222 (286)
63 COG2152 Predicted glycosylase 97.8 0.0002 4.4E-09 72.4 11.1 103 117-230 30-139 (314)
64 cd09003 GH43_AXH_1 Glycosyl hy 97.8 0.002 4.2E-08 67.3 18.9 150 58-230 78-248 (311)
65 smart00640 Glyco_32 Glycosyl h 97.7 0.00023 5.1E-09 77.7 11.5 131 64-205 74-215 (437)
66 cd08988 GH43_ABN Glycosyl hydr 97.6 0.0016 3.5E-08 66.7 16.0 147 57-221 56-214 (279)
67 COG3507 XynB Beta-xylosidase [ 97.6 0.00087 1.9E-08 73.0 13.9 163 59-248 31-215 (549)
68 cd08980 GH43_1 Glycosyl hydrol 97.6 0.0032 6.8E-08 64.8 17.3 157 57-231 54-228 (288)
69 cd09001 GH43_XYL_2 Glycosyl hy 97.6 0.0019 4.1E-08 65.9 15.2 134 58-225 76-212 (269)
70 cd09000 GH43_XYL_1 Glycosyl hy 97.3 0.0061 1.3E-07 62.7 15.7 147 54-226 64-219 (288)
71 cd00260 Sialidase Sialidases o 97.2 0.01 2.2E-07 62.6 16.4 164 43-227 58-239 (351)
72 PF13088 BNR_2: BNR repeat-lik 97.1 0.0036 7.8E-08 63.4 10.9 149 57-226 47-199 (275)
73 PF03664 Glyco_hydro_62: Glyco 97.1 0.035 7.6E-07 54.7 16.8 183 52-273 17-207 (271)
74 cd08982 GH43_3 Glycosyl hydrol 96.6 0.027 5.9E-07 58.3 12.6 80 117-204 159-239 (295)
75 cd08987 GH62 Glycosyl hydrolas 96.2 0.16 3.5E-06 51.9 15.2 142 58-226 78-230 (303)
76 PF13088 BNR_2: BNR repeat-lik 96.1 0.13 2.8E-06 52.0 14.6 145 69-228 1-152 (275)
77 PF00251 Glyco_hydro_32N: Glyc 96.1 0.091 2E-06 54.7 13.4 113 125-248 16-138 (308)
78 cd00260 Sialidase Sialidases o 95.2 3.9 8.4E-05 43.0 21.8 170 64-248 21-207 (351)
79 PF13859 BNR_3: BNR repeat-lik 94.3 0.25 5.4E-06 51.5 9.7 143 60-227 62-213 (310)
80 COG3507 XynB Beta-xylosidase [ 92.7 1.7 3.7E-05 48.0 13.0 150 53-221 86-243 (549)
81 PTZ00334 trans-sialidase; Prov 86.5 4.2 9.1E-05 47.3 10.4 149 58-227 179-350 (780)
82 PF13810 DUF4185: Domain of un 86.4 21 0.00046 37.4 14.8 153 60-226 96-272 (316)
83 COG3940 Predicted beta-xylosid 82.8 7.2 0.00016 38.0 8.5 102 64-172 137-247 (324)
84 PF02435 Glyco_hydro_68: Levan 79.3 35 0.00075 37.1 13.2 128 68-206 143-320 (428)
85 COG3940 Predicted beta-xylosid 77.0 78 0.0017 31.1 14.0 169 44-231 57-246 (324)
86 COG1621 SacC Beta-fructosidase 76.4 58 0.0013 36.2 14.2 95 127-232 50-153 (486)
87 KOG0228 Beta-fructofuranosidas 71.0 27 0.00057 38.6 9.6 91 127-227 68-167 (571)
88 PF03664 Glyco_hydro_62: Glyco 62.8 1.8E+02 0.0038 29.4 13.5 70 60-139 78-153 (271)
89 PF13810 DUF4185: Domain of un 62.6 32 0.00069 36.0 8.2 93 127-227 103-210 (316)
90 PF00337 Gal-bind_lectin: Gala 58.2 1.3E+02 0.0029 26.6 11.2 24 506-530 82-105 (133)
91 PF06905 FAIM1: Fas apoptotic 51.4 44 0.00095 31.9 6.3 31 509-540 108-138 (177)
92 COG5567 Predicted small peripl 31.1 42 0.00092 25.5 2.2 21 1-21 1-21 (58)
93 PF06439 DUF1080: Domain of Un 27.6 2.3E+02 0.005 26.2 7.4 55 506-564 127-184 (185)
94 smart00276 GLECT Galectin. Gal 24.4 4.9E+02 0.011 22.9 12.1 26 506-532 76-101 (128)
95 cd00070 GLECT Galectin/galacto 22.9 5.2E+02 0.011 22.7 11.4 24 506-530 77-100 (127)
96 PF05545 FixQ: Cbb3-type cytoc 22.5 49 0.0011 24.3 1.2 26 5-30 12-37 (49)
97 PF02012 BNR: BNR/Asp-box repe 21.8 70 0.0015 16.8 1.3 11 150-164 2-12 (12)
98 PF07172 GRP: Glycine rich pro 21.8 70 0.0015 27.3 2.2 18 1-18 1-19 (95)
No 1
>KOG0228 consensus Beta-fructofuranosidase (invertase) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-111 Score=870.80 Aligned_cols=562 Identities=61% Similarity=1.059 Sum_probs=516.4
Q ss_pred hHHHHHHHHHHHhhcceeeccccccccCcccc-CCCCCCCCCCccceecCCCCCccCCcceEEECCEEEEEeeeCCCCCC
Q 008242 5 YLSLFLFFALFLGHGVVELQASHHVYRNLQTS-QSTSPNQPYRTGYHFQPPKNWINDPNGVMIYKGIYHLFYQYNPKGAV 83 (573)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~RP~~H~~p~~gw~nDPng~~~~~G~yHlfyq~~P~~~~ 83 (573)
-++|+|+..+++.+++.-+.+.+..|+.|++- ++...+.++||.|||+|++|||||| +|++|.|||||||||.+..
T Consensus 8 ~~~l~l~~~~~~~~~vk~~da~~~~~~~l~~~s~~~~~n~~~Rp~~HFqP~k~wMN~P---~~ykG~yHLFyQyNP~gav 84 (571)
T KOG0228|consen 8 LVLLLLLVTLNLTNYVKGLDAFHQNYAGLQSESPSNTVNQPDRPGFHFQPPKGWMNDP---MYYKGKYHLFYQYNPKGAV 84 (571)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhhcccCccccccccCCceeecCCCcccccCc---cccCcEEEEEEecCCCCce
Confidence 35677788888999888888999999877655 4457889999999999999999999 8899999999999999999
Q ss_pred CCCcEEEEEEeCCCCcceecCCCCCCCCCccCCceEeeeEEEcCCCceEEEEcccCCCCceeEEEEEEcCCCCCccceeE
Q 008242 84 WGNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWV 163 (573)
Q Consensus 84 ~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~d~~gv~sGsav~~~dg~~~l~YTg~~~~~~~~q~lA~s~d~~~~~l~~w~ 163 (573)
||+.+||||+|+||+||+.+|+||.|++++|..|||||||+++++|++.++|||...+..|.|.+|+..|.+|+.|+.|.
T Consensus 85 wg~ivWGHavSkDLinW~~lp~Ai~Ps~~~ding~wSGSati~~~~~~vilytg~d~~~rqVqn~a~p~d~sdp~l~~w~ 164 (571)
T KOG0228|consen 85 WGNIVWGHAVSKDLINWEALPPAIAPSEWFDINGCWSGSATIDPNNSPVILYTGIDPNNRQVQNYAYPKDVSDPQLIAWS 164 (571)
T ss_pred eeeeEeeeecchhhccccccCcccCCCCccccCccccceEEEccCCCeEEEecccCcCceEEEEEeccCCCCchhhheee
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred ecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecCCeeEEEEEEeCCCCCCEEcccccccCCCCCccccCc
Q 008242 164 KSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLAILYRSKDFVHWIKAKHPLHSVKGTGMWECPD 243 (573)
Q Consensus 164 k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~~~G~i~ly~S~Dl~~W~~~~~~~~~~~~~~~wEcPd 243 (573)
|.++||++.++.-.++....||||+++|++++|+|+|++|+..+++|.+.+|+|.|+++|+..+.|++....++||||||
T Consensus 165 k~~gnp~~~p~~V~~in~s~FRDPttaW~~~dgkWrm~vgsk~~q~g~a~~Y~S~Df~~W~k~~~~~h~~~~tgmwECPd 244 (571)
T KOG0228|consen 165 KDGGNPFMKPDKVLGINSSQFRDPTTAWFGQDGKWRMTVGSKIKQRGKAIIYSSDDFKHWTKSSVPLHSGDLTGMWECPD 244 (571)
T ss_pred cCCCceeeccccccCCChhhccCCceeeecCCCcEEEEEEeecCccceEEEEeccchhhhhcccccccccCccceEECCC
Confidence 99999999765334566789999999999999999999999987889999999999999999999998888899999999
Q ss_pred eEEeccCCCCCccccCCCCCceeEEEEecCCCCceeEEEEEEeCCCCeeecCCCCcCCCCccccccCCCccceeEecCCC
Q 008242 244 FFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDTKHEYYTVGTYSTAKDRYVPDEGSVESDSGLRFDYGKYYASKTFFDGAK 323 (573)
Q Consensus 244 lf~l~~~g~~~~~~~~~~~~~~~vl~~s~~~~~~~~Y~vG~~d~~~~~f~~~~~~~~~~~~~~lD~G~fYA~qt~~d~~~ 323 (573)
||++..+|++++.++..+...|||+..|...++..+|++|+||+.+.+|+|+.++.+.....+.|+|.|||.|||.|..+
T Consensus 245 ffpVs~tg~~g~d~s~~~~~nkhvlkasl~gt~~d~Y~IG~yd~~~~~fvpd~~~~~~~~dlr~Dyg~~YASkTFfds~~ 324 (571)
T KOG0228|consen 245 FFPVSITGTDGLDWSLFGSINKHVLKASLGGTSNDQYFIGTYDGEKDTFVPDDGFSRVSVDLRYDYGKYYASKTFFDSVK 324 (571)
T ss_pred cEEecccCCCCceEEEeccccccccccccCCceeEEEEEecccCCcceeeccCCcccccccccccchhhhhhhhhccccC
Confidence 99999999999988766655699999999888899999999999888999998776554456789999999999999889
Q ss_pred CcEEEEEeccCCCCCCCCCCCCccccccccEEEEEec-CCCeEEecchHHHHhhhccceeccceeecCcceEEEcccccc
Q 008242 324 NRRVLWGWVNESSSVNDDVKKGWAGIQAIPRKLWLDK-SGKHLVQWPVVEIEKLRVNQVQVPSKLLKGGSVIEVTGVTAA 402 (573)
Q Consensus 324 grri~~gW~~~~~~~~~~~~~gW~G~lslPRel~l~~-~g~~L~q~Pv~el~~Lr~~~~~~~~~~~~~~~~~~l~~~~~~ 402 (573)
+|||+|||++++++..+..+.||+|.||+||+++|+. .|++|.|.|+.|++.||.+.+...+...+++...+..++++.
T Consensus 325 ~rrIlwgWa~es~~~~dd~~kgw~g~qtipRki~Ld~~s~k~l~qwpv~eie~Lr~~~v~~~~~~~~~g~~~~v~~~t~~ 404 (571)
T KOG0228|consen 325 GRRILWGWASESDYTNDDPTKGWRGLQTIPRKIWLDTESGKQLTQWPVEEIEPLRLSNVKMDNKLFKPGSLNEVSGITAA 404 (571)
T ss_pred CcEEEEEecccCcccccchhcccccccccceEEEeeccCCCcccccchheeecccccccCccccccCCceeEEecccccc
Confidence 9999999999999998889999999999999999997 788999999999999999988766667778888899999999
Q ss_pred ceEEEEEEEecccccccccCCCCCCccccccccCCccccCccceEEEEEEeCCCCeEEEEEEEeeeCCCCceEEEEeecC
Q 008242 403 QADVEISFDVSDFKKAEKLDPGWTNPQLLCSQKGASVKGALGPFGLLALASKDLKEYTAVFFRIFKGEDNKFVVLMCSDQ 482 (573)
Q Consensus 403 ~~d~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~s~d~~e~t~i~yd~~~~~~~~~~~~~~~Dr 482 (573)
++++++.|++..++.+..++.++.+++.+|...+.++.++.|+||+..+++.|.+|+|.++|...+.. .++.+++|.|.
T Consensus 405 q~dvev~f~~~~Leka~~~~~~~t~~~~~c~~~~~~v~~~~gpfgl~~la~~dl~eyt~v~f~i~k~~-~~~~v~~csd~ 483 (571)
T KOG0228|consen 405 QADVEVTFEVEDLEKAIVIEPSWTDPQFLCLTGGSSVREGLGPFGLMVLASSDLEEYTPVGFRIFKAK-KKYVVLMCSDQ 483 (571)
T ss_pred cccceEEEEecccccccccCccccccceeeecCCcccccCCCcceEEEEeecCcccceeeeEEEeecC-CcceeEEeccC
Confidence 99999999999888888888888778889999999999999999999999999999999999998876 57788999999
Q ss_pred CCCCCCCCCCCcccceEEEeccCCCeEEEEEEEeCCeEEEEccCCeEEEEEeeecCCccCCccEEEEEeCCceeEEEEEE
Q 008242 483 SRSSLNSDNDKTTYGAFLNVDPVYEKLSLRSLIDHSIVESFGVGGKACITARVYPTLAIDDYAHLYAFNNGTENVKINGL 562 (573)
Q Consensus 483 ~~s~~~~~~~~~~~~~~~~~~~~~~~l~LrIfvD~S~vEVFvn~G~~v~T~riyp~~~~~~~~~~~~~~~g~~~~~~~~l 562 (573)
++|++..+.+++.+++++.+.+ ++++.||++||+|+||.|.|+|+.|+|+|+||..+...+..+++|++|...+.+.++
T Consensus 484 ~~sSl~~d~~k~~~~afvdv~~-~~~islr~LiDhsivEsyg~~G~t~iTsrvyp~~ai~~~~~lf~fn~g~~~v~v~sl 562 (571)
T KOG0228|consen 484 SRSSLAEDNYKPSIGAFVDVYP-HQKISLRSLIDHSIVESYGNGGKTVITSRVYPTLAIGEGAHLFVFNNGSQLVNVTSL 562 (571)
T ss_pred CCccccccccccceeeEEEecC-CCccchhhhhhhhhHHHhccCCcEEEEeeeeeeecccccceEEEecccccceEEEEe
Confidence 9999999999999999998877 899999999999999999999999999999999988788999999988777899999
Q ss_pred EeecCCccc
Q 008242 563 SAWSMKKAQ 571 (573)
Q Consensus 563 ~~w~m~~~~ 571 (573)
.+|+|++++
T Consensus 563 ~aw~m~~~~ 571 (571)
T KOG0228|consen 563 NAWSMKNAQ 571 (571)
T ss_pred ehhhcccCC
Confidence 999999874
No 2
>COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.8e-98 Score=793.12 Aligned_cols=457 Identities=30% Similarity=0.546 Sum_probs=357.8
Q ss_pred CccccCCCCCCCCCCccceecCCCCCccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCCCCC
Q 008242 32 NLQTSQSTSPNQPYRTGYHFQPPKNWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQ 111 (573)
Q Consensus 32 ~~~~~~~~~~~~~~RP~~H~~p~~gw~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~ 111 (573)
++++.......++|||.|||+||.||||||||++|++|+|||||||+|+++.||+||||||+|+||+||+++|+||.|++
T Consensus 15 ~~~~~~~~~~~~~~Rp~yHftP~~G~mNDPNG~iy~~G~yHlFYQ~~P~~~~~g~~~WgHa~S~Dlv~W~~~piaL~Pd~ 94 (486)
T COG1621 15 ELEKISESVAKSPYRPQYHFTPPTGWLNDPNGLIYFDGKYHLFYQYNPFGAAHGPKHWGHAVSKDLVHWEHLPIALAPDD 94 (486)
T ss_pred hHhhhhhhccCCCCCceeeecCCcCceECCCceeEECCEEEEEEecCCCCCCCCCceeeeeccCCcccceECCceecCCC
Confidence 34555556777999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCceEeeeEEEcCCCceEEEEcccCC----CCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCC
Q 008242 112 QSDINGCWSGSATILPGEKPAIFYTGIDP----HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDP 187 (573)
Q Consensus 112 ~~d~~gv~sGsav~~~dg~~~l~YTg~~~----~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP 187 (573)
++|.+||||||||++ +|...+||||+.+ .+.+.||+|+|+|+ .+|+|+.+|||+..| +++ +.|||||
T Consensus 95 ~~d~~g~ySGSAV~~-~~~l~lfytg~v~~~~~~r~~~Q~iA~s~dg-----~~f~K~~~~~i~~~p--~~~-t~hFRDP 165 (486)
T COG1621 95 DYDSHGCYSGSAVVD-DGNLSLFYTGNVRDSNGIRQQTQCIAYSEDG-----GTFEKYSGNPIIDQP--EGY-TPHFRDP 165 (486)
T ss_pred ccccCCceeeeEEEe-CCcEEEEEccceeccCCcceeEEEEEEEcCC-----CceEeccCCceecCC--Ccc-cccCCCC
Confidence 999999999999985 8999999999865 36789999999996 578997678999887 665 7899999
Q ss_pred eeEEecCCCeEEEEEeeec-CCeeEEEEEEeCCCCCCEEccccccc-CCCCCccccCceEEeccCCCCCccccCCCCCce
Q 008242 188 TTAWLGPDKRWRVIIGSKI-NRKGLAILYRSKDFVHWIKAKHPLHS-VKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTK 265 (573)
Q Consensus 188 ~V~~~~~~g~~~m~~g~~~-~~~G~i~ly~S~Dl~~W~~~~~~~~~-~~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~ 265 (573)
||+|. ++++|||++|++. +..|+|+||+|+||++|++.|++... ...++||||||||+|+ +...+. +
T Consensus 166 Kv~w~-~~~~~~~mlgAq~~~~~g~i~lY~S~DL~~W~~~g~~~~~~~~~gym~ECPdlf~l~--~~~~~~--------~ 234 (486)
T COG1621 166 KVVWD-EGGKWWMMLGAQGEDLKGTILLYESDDLKNWQFTGEFGLEQGGLGYMWECPDLFELD--GEDVLL--------F 234 (486)
T ss_pred ccccc-CCCcEEEEEEEecCCCCceEEEEeCCCccCcEEEEeeccCCCceeeEEECCCeEEec--CcCceE--------E
Confidence 99898 6889999999987 56899999999999999999976655 3346799999999999 433333 5
Q ss_pred eEEEEecCC-----CCceeEEEEEEeCCCCeeecCCCCcCCCCccccccCC-CccceeEecCCCCcEEEEEeccCCCCC-
Q 008242 266 HVLKVSLDD-----TKHEYYTVGTYSTAKDRYVPDEGSVESDSGLRFDYGK-YYASKTFFDGAKNRRVLWGWVNESSSV- 338 (573)
Q Consensus 266 ~vl~~s~~~-----~~~~~Y~vG~~d~~~~~f~~~~~~~~~~~~~~lD~G~-fYA~qt~~d~~~grri~~gW~~~~~~~- 338 (573)
|++..+.++ ...++|++|+||++ +|.+..+ .+++||+|+ |||||||.++ +||||++|||++|++.
T Consensus 235 ~pqg~~~~~~~~~n~~~~~Y~vG~~dg~--~f~~~~~-----~~~~LD~G~DfYApQtf~~~-dgrri~igWmg~w~~~~ 306 (486)
T COG1621 235 WPQGLSINGGEYDNIYQSGYFVGDFDGK--EFKLDDG-----QFRELDFGFDFYAPQTFLDP-DGRRILIGWMGNWDYTN 306 (486)
T ss_pred cceeeecCCCcCCCcceeEEEEEeeccc--eeEecCC-----CceecccCccccceeeccCC-CCCEEEEEeccCccccC
Confidence 666666543 35589999999986 6665543 368999999 9999999985 7999999999999987
Q ss_pred -CCCCCCCccccccccEEEEEecCCCeEEecchHHHHhhhccceeccceeecCcceEEEccccccceEEEEEEEeccccc
Q 008242 339 -NDDVKKGWAGIQAIPRKLWLDKSGKHLVQWPVVEIEKLRVNQVQVPSKLLKGGSVIEVTGVTAAQADVEISFDVSDFKK 417 (573)
Q Consensus 339 -~~~~~~gW~G~lslPRel~l~~~g~~L~q~Pv~el~~Lr~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~f~~~~~~~ 417 (573)
.++..++|+|||||||||+|+ +| +|+|+|++||++||..+..+.+..+++. ..+....+.+.+++ +.+..
T Consensus 307 ~~PT~~~~w~~~mTlpRel~l~-~~-~L~Q~Pi~~l~~lr~~~~~~~~~~~~~~--~~l~~~~~~~~~l~--~~~~~--- 377 (486)
T COG1621 307 NYPTIDEGWRGAMTLPRELTLE-DG-KLYQTPVRELESLRKPEEAAHNTTLSGN--SKLELPSGDAYELD--LDLIW--- 377 (486)
T ss_pred CCCccccCcCccceeeEEEEEc-CC-eEEecchHHHHhhhcccccccccccccc--eeeeccCCccEEEE--EEeec---
Confidence 566667999999999999996 56 6999999999999999666666666554 22333334444443 32211
Q ss_pred ccccCCCCCCccccccccCCccccCccceEEEEEEeCCCCeEEEEEEEeeeCCCCceEEEEeecCCCCCCCCCCCCcccc
Q 008242 418 AEKLDPGWTNPQLLCSQKGASVKGALGPFGLLALASKDLKEYTAVFFRIFKGEDNKFVVLMCSDQSRSSLNSDNDKTTYG 497 (573)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~s~d~~e~t~i~yd~~~~~~~~~~~~~~~Dr~~s~~~~~~~~~~~~ 497 (573)
.....+|+.++.+.. .+.++.+. . .+++||+.|. . ....++
T Consensus 378 -----------------------~~~~~~~~~l~~~~~-----~~~~~~~~----~---~l~ldR~~s~-~---f~~~~~ 418 (486)
T COG1621 378 -----------------------TDATSFGLELRMGLN-----LVGYDVEN----E---TLTLDRSDSP-L---FTVQDG 418 (486)
T ss_pred -----------------------cccceEEEEeecCcc-----eecccccc----c---eEEEeccccc-c---ccccCC
Confidence 011257888876643 45555432 1 2667998871 1 111223
Q ss_pred eEEEeccC-CCeEEEEEEEeCCeEEEEccCCeEEEEEeeecCCccCCccEEEEEeCCceeEEEEEEEeecCCc
Q 008242 498 AFLNVDPV-YEKLSLRSLIDHSIVESFGVGGKACITARVYPTLAIDDYAHLYAFNNGTENVKINGLSAWSMKK 569 (573)
Q Consensus 498 ~~~~~~~~-~~~l~LrIfvD~S~vEVFvn~G~~v~T~riyp~~~~~~~~~~~~~~~g~~~~~~~~l~~w~m~~ 569 (573)
..+.+... ..+++||||||+|+||||+|+|+.|+|+||||... .+++.+ .+.+ +.+++. .+.|.+++
T Consensus 419 ~~r~~~~~~~~~v~l~if~D~ssvEiF~NdGe~v~T~rifp~~~-~~~i~l--~~~~-g~~~~~-~~~~~l~~ 486 (486)
T COG1621 419 ETRECFIENGAKVHLRIFVDNSSVEIFINDGEKVFTSRIFPTPD-ANGISL--YSDQ-GVAVVQ-NTIWPLKS 486 (486)
T ss_pred ceeeeccCCCceEEEEEEEeCCeEEEEEcCCceEEEEEecCCCc-ccceEE--EccC-ceEEEE-eeeeccCC
Confidence 33433333 34489999999999999999999999999999886 234444 3333 233443 37898874
No 3
>TIGR01322 scrB_fam sucrose-6-phosphate hydrolase.
Probab=100.00 E-value=7.8e-90 Score=746.33 Aligned_cols=417 Identities=31% Similarity=0.540 Sum_probs=329.6
Q ss_pred CCCCCCCCccceecCCCCCccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCCCCCCccCCce
Q 008242 39 TSPNQPYRTGYHFQPPKNWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGC 118 (573)
Q Consensus 39 ~~~~~~~RP~~H~~p~~gw~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~d~~gv 118 (573)
...+++|||+|||+|+.||||||||++|++|+||||||++|+++.||+++||||+|+||+||+++|+||.|++.+|+.||
T Consensus 7 ~~~~~~~rp~~H~~p~~gw~nDPng~~~~~G~yHlfyq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~d~~G~ 86 (445)
T TIGR01322 7 RALQSEWRPTFHIQPQTGLLNDPNGLIYFKGEYHLFYQWFPFGPVHGLKSWGHYTSKDLVHWEDEGVALAPDDPYDSHGC 86 (445)
T ss_pred hhccCCcCccCccCCCcCCccCCCcceEECCEEEEEEccCCCCCccCceEEEEEECCCccccEECCccCcCCCcccCCce
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeEEEcCCCceEEEEcccCC----CCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecC
Q 008242 119 WSGSATILPGEKPAIFYTGIDP----HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGP 194 (573)
Q Consensus 119 ~sGsav~~~dg~~~l~YTg~~~----~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~ 194 (573)
|||||++ .+|+++|||||+.. .+.+.|++|+|.|+ .+|+|.. +|||.++ +.....+||||+| |+ .
T Consensus 87 ~sGsav~-~~g~~~l~YTg~~~~~~~~~~~~q~lA~S~Dg-----~~~~k~~-~pvi~~~--~~~~~~~fRDP~V-~~-~ 155 (445)
T TIGR01322 87 YSGSAVD-NNGQLTLMYTGNVRDSDWNRESYQCLATMDDD-----GHFEKFG-IVVIELP--PAGYTAHFRDPKV-WK-H 155 (445)
T ss_pred EECeEEe-eCCEEEEEEeccccCCCCCeeEEEEEEEcCCC-----CeEEECC-CceEeCC--CCCCcCcCCCCcE-Ee-E
Confidence 9999997 58999999999753 24578999999885 6899984 5999764 3334578999996 55 4
Q ss_pred CCeEEEEEeeec-CCeeEEEEEEeCCCCCCEEcccccccC-----CCCCccccCceEEeccCCCCCccccCCCCCceeEE
Q 008242 195 DKRWRVIIGSKI-NRKGLAILYRSKDFVHWIKAKHPLHSV-----KGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVL 268 (573)
Q Consensus 195 ~g~~~m~~g~~~-~~~G~i~ly~S~Dl~~W~~~~~~~~~~-----~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl 268 (573)
+|+|||++|++. +..|++.+|+|+||++|++.+.+.... ..+.||||||||+|+ | ||||
T Consensus 156 ~g~~~M~~g~~~~~~~g~i~ly~S~Dl~~W~~~g~~~~~~~~~~~~~g~~~ECPdlf~l~--~-------------k~vL 220 (445)
T TIGR01322 156 NGHWYMVIGAQTETEKGSILLYRSKDLKNWTFVGEILGDGQNGLDDRGYMWECPDLFSLD--G-------------QDVL 220 (445)
T ss_pred CCEEEEEEEEecCCCceEEEEEECCCcccCeEecccccccccccCCccceEECCeEEEEC--C-------------cEEE
Confidence 689999999986 456899999999999999998654332 235699999999997 5 7888
Q ss_pred EEecCCC----------CceeEEEEEEeCCCCeeecCCCCcCCCCccccccCC-CccceeEecCCCCcEEEEEeccCCCC
Q 008242 269 KVSLDDT----------KHEYYTVGTYSTAKDRYVPDEGSVESDSGLRFDYGK-YYASKTFFDGAKNRRVLWGWVNESSS 337 (573)
Q Consensus 269 ~~s~~~~----------~~~~Y~vG~~d~~~~~f~~~~~~~~~~~~~~lD~G~-fYA~qt~~d~~~grri~~gW~~~~~~ 337 (573)
++|.++. ..++|++|+||..+.+|++++. .+.||+|+ |||||+|.++ +|||||||||++|+.
T Consensus 221 ~~s~~g~~~~~~~~~~~~~~~Y~vG~~d~~~~~f~~~~~------~~~lD~G~dfYA~qtf~~~-~gr~i~~gW~~~~~~ 293 (445)
T TIGR01322 221 LFSPQGLDASGYDYQNIYQNGYIVGQLDYEAPEFTHGTE------FHELDYGFDFYAPQTFLAP-DGRRILVAWMGLPEI 293 (445)
T ss_pred EEeccccCcccccccccccceeEEEEEECCCCEEecCCC------CceeccCcCceeeeeEECC-CCCEEEEEeCCCCcc
Confidence 8876531 2367999999987789987642 46899998 9999999985 799999999999987
Q ss_pred CCCCCCCCccccccccEEEEEecCCCeEEecchHHHHhhhccceeccceeecCcceEEEccccccceEEEEEEEeccccc
Q 008242 338 VNDDVKKGWAGIQAIPRKLWLDKSGKHLVQWPVVEIEKLRVNQVQVPSKLLKGGSVIEVTGVTAAQADVEISFDVSDFKK 417 (573)
Q Consensus 338 ~~~~~~~gW~G~lslPRel~l~~~g~~L~q~Pv~el~~Lr~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~f~~~~~~~ 417 (573)
..++.+.+|+|+|||||+|+|+ +| +|+|+|++||++||.+... ... ......+.+.. .+++|+ +++..
T Consensus 294 ~~~~~~~~W~g~lslpR~l~l~-~g-~L~~~Pv~el~~lr~~~~~---~~~-~~~~~~~~~~~-~~~~l~--~~~~~--- 361 (445)
T TIGR01322 294 DYPTDRDGWAHCMTLPRELTLK-DG-KLVQTPLRELKALRTEEHI---NVF-GDQEHTLPGLN-GEFELI--LDLEK--- 361 (445)
T ss_pred CCCCccCCcccccccCEEEEEe-CC-eEEEEEhHHHHHHhcCccc---ccc-ccccccccCCC-ceEEEE--EEecC---
Confidence 6666678999999999999997 56 7999999999999986542 011 11111122221 233343 33321
Q ss_pred ccccCCCCCCccccccccCCccccCccceEEEEEEeCCCCeEEEEEEEeeeCCCCceEEEEeecCCCCCCCCCCCCcccc
Q 008242 418 AEKLDPGWTNPQLLCSQKGASVKGALGPFGLLALASKDLKEYTAVFFRIFKGEDNKFVVLMCSDQSRSSLNSDNDKTTYG 497 (573)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~s~d~~e~t~i~yd~~~~~~~~~~~~~~~Dr~~s~~~~~~~~~~~~ 497 (573)
++...+||.+ .+ .++.+.|.||..+. + +.+||++++.... .+
T Consensus 362 -----------------------~~~~~~~l~~-~~--~~~~~~i~~~~~~~---~----l~~dr~~~~~~~~-----~~ 403 (445)
T TIGR01322 362 -----------------------DSAFELGLAL-TN--KGEETLLTIDADEG---K----VTLDRRSSGNLED-----YG 403 (445)
T ss_pred -----------------------CCccEEEEEE-eC--CCCeEEEEEECcCC---E----EEEEccCCCCcCC-----cc
Confidence 0112688888 43 35689999997642 2 5679988763311 11
Q ss_pred eEEEecc-CCCeEEEEEEEeCCeEEEEccCCeEEEEEeeecC
Q 008242 498 AFLNVDP-VYEKLSLRSLIDHSIVESFGVGGKACITARVYPT 538 (573)
Q Consensus 498 ~~~~~~~-~~~~l~LrIfvD~S~vEVFvn~G~~v~T~riyp~ 538 (573)
..+.+.. .++.++||||||+|+||||||||+.|||+||||+
T Consensus 404 ~~~~~~~~~~~~~~l~i~vD~s~vEvFvn~G~~~~t~riyp~ 445 (445)
T TIGR01322 404 GTRSCPLPNTKKVSLHIFIDKSSVEIFINDGEEVMTSRIFPD 445 (445)
T ss_pred ceEEEEcCCCCeEEEEEEEECCEEEEEECCCEEEEEEeccCC
Confidence 1222222 3578999999999999999999999999999995
No 4
>smart00640 Glyco_32 Glycosyl hydrolases family 32.
Probab=100.00 E-value=1.4e-85 Score=711.13 Aligned_cols=422 Identities=48% Similarity=0.855 Sum_probs=321.2
Q ss_pred eecCCCCCccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCCCCCCccCCceEeeeEEEcCCC
Q 008242 50 HFQPPKNWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGCWSGSATILPGE 129 (573)
Q Consensus 50 H~~p~~gw~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~d~~gv~sGsav~~~dg 129 (573)
||+|+.||||||||++|++|+||||||++|+++.||+++||||+|+||+||+++|+||.|+..+|+.|||||||+++ +|
T Consensus 1 H~~p~~gw~NDPnGl~~~~G~yHlFyq~~p~~~~~g~~~Wgha~S~Dlv~W~~~~~aL~P~~~~d~~g~~sGsav~~-~~ 79 (437)
T smart00640 1 HFQPPKGWMNDPNGLIYYKGKYHLFYQYNPFGPVWGNIHWGHAVSKDLVHWTHLPVALAPDEWYDSNGVFSGSAVID-PG 79 (437)
T ss_pred CCCCCcCccCCCCeeeEECCEEEEEEecCCCCCCCCCeEEEEEEcCCcceeeecCcccCCCCcCCCCcEEEEEEEEC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985 78
Q ss_pred ceEEEEcccCCC------CceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEe
Q 008242 130 KPAIFYTGIDPH------NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIG 203 (573)
Q Consensus 130 ~~~l~YTg~~~~------~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g 203 (573)
++++||||+... ..+.|.+|.+.+. +++|+|+++||||.++ +++...+||||+|+|+ ++++|||++|
T Consensus 80 ~~~~~YTg~~~~~~~~~~~~~~~~~~ass~d----~~~w~k~~~~Pvi~~~--p~~~~~~fRDP~Vf~~-~~~~~~m~~g 152 (437)
T smart00640 80 NLSLLYTGNVAIDTNVQVQRQAQQLAASDDL----GGTWTKYPGNPVLVPP--PGIGTEHFRDPKVFWY-DGDKWYMVIG 152 (437)
T ss_pred ceEEEEcCCcccccccCcccEEEEEEEECCC----CCeeEECCCCcEEeCC--CCCCCCCcCCCCccEE-CCCEEEEEEE
Confidence 899999997421 2233444444433 3899999779999765 5556789999998776 4479999999
Q ss_pred eec-CCeeEEEEEEeCCCCCCEEccccccc--CCCCCccccCceEEeccCCCCCccccCCCCCceeEEEEecCCCCceeE
Q 008242 204 SKI-NRKGLAILYRSKDFVHWIKAKHPLHS--VKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDTKHEYY 280 (573)
Q Consensus 204 ~~~-~~~G~i~ly~S~Dl~~W~~~~~~~~~--~~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~~~~~~~Y 280 (573)
++. +..|+|++|+|+||++|++.+.++.. ...+.||||||||+|+++| ...||||++|.++...+.|
T Consensus 153 ~~~~~~~G~i~ly~S~Dl~~W~~~~~~~~~~~~~~g~~wECPdlf~l~~~~----------~~~~~vLi~s~~g~~~~~y 222 (437)
T smart00640 153 ASDEDKTGIALLYRSTDLKNWTLLGELLHSGVGDTGGMWECPDLFPLPGDG----------DTSKHVLKVSPQGGSGNYY 222 (437)
T ss_pred EEecCCCeEEEEEECCCcccCeECCcccccCCCCccceEECCcEEEeCCCC----------CceeEEEEECcCCCCccEE
Confidence 876 45799999999999999999865543 2345899999999998543 2359999999987677899
Q ss_pred EEEEEeCCCCeeecCCCCcCCCCccccccCC-CccceeEecCCCCcEEEEEeccCCCC-CCCCCCCCccccccccEEEEE
Q 008242 281 TVGTYSTAKDRYVPDEGSVESDSGLRFDYGK-YYASKTFFDGAKNRRVLWGWVNESSS-VNDDVKKGWAGIQAIPRKLWL 358 (573)
Q Consensus 281 ~vG~~d~~~~~f~~~~~~~~~~~~~~lD~G~-fYA~qt~~d~~~grri~~gW~~~~~~-~~~~~~~gW~G~lslPRel~l 358 (573)
++|++++. .+|+|+.... ....++||+|+ |||||+|.+++++|+||||||++++. ....+..+|+|+|||||||+|
T Consensus 223 ~~G~~~g~-~~f~~~~~~~-~~~~~~lD~G~dfYA~qt~~~~~~~r~i~~gW~~~~~~~~~~~p~~~W~g~~tlPRel~l 300 (437)
T smart00640 223 FVGYFDGS-DQFTPDDPED-VGIGLRLDYGFDFYASQTFYDPDGNRRILIGWMGEWDSYADDVPTKGWAGALSLPRELTL 300 (437)
T ss_pred EEEEEcCc-eeEeECCccc-cCccceEecCCCceeeeeeecCCCCcEEEEEecCCCccccccCCCCCccccceeCeEEEE
Confidence 99999863 4798875421 11245899998 99999999865569999999999974 222334899999999999999
Q ss_pred e-cCCCeEEecchHHHHhhhccceeccceeecCcceEEEcc--ccccceEEEEEEEecccccccccCCCCCCcccccccc
Q 008242 359 D-KSGKHLVQWPVVEIEKLRVNQVQVPSKLLKGGSVIEVTG--VTAAQADVEISFDVSDFKKAEKLDPGWTNPQLLCSQK 435 (573)
Q Consensus 359 ~-~~g~~L~q~Pv~el~~Lr~~~~~~~~~~~~~~~~~~l~~--~~~~~~d~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (573)
+ ++| +|+|+|++||++||... ......+.......+.. ..+.+++++++++...
T Consensus 301 ~~~~g-~L~~~Pv~el~~lr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~--------------------- 357 (437)
T smart00640 301 DKTGG-KLLQWPVEELESLRNVK-ELSNLTLKPGSVNELLGLTASGDAYEIELSFEVDS--------------------- 357 (437)
T ss_pred EecCC-EEEEeecHHHHhhhCcc-cccceeecCCceeeeecccCCccEEEEEEEEEeCC---------------------
Confidence 6 555 79999999999999542 22222332222222211 2334556666654321
Q ss_pred CCccccCccceEEEEEEeCCCCeEEEEEEEeeeCCCCceEEEEeecCCCCCCCCC-CCCcccceEEEeccCCCeEEEEEE
Q 008242 436 GASVKGALGPFGLLALASKDLKEYTAVFFRIFKGEDNKFVVLMCSDQSRSSLNSD-NDKTTYGAFLNVDPVYEKLSLRSL 514 (573)
Q Consensus 436 ~~~~~~~~~~~gl~l~~s~d~~e~t~i~yd~~~~~~~~~~~~~~~Dr~~s~~~~~-~~~~~~~~~~~~~~~~~~l~LrIf 514 (573)
.++..+||.++.+++.++.+.|.||.... . +.+||++++.... ........+..+. .+++++||||
T Consensus 358 -----~~~~~~~l~~~~~~~~~~~~~i~~~~~~~---~----l~vdR~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lri~ 424 (437)
T smart00640 358 -----GGAGPFGLLVLASEDLSEQTAVYFDVSKG---T----LCLDRRSSGTSNDEVFKGVRGATVPVD-PGETLSLRIL 424 (437)
T ss_pred -----CcceeEEEEEEeCCCCCceEEEEEEcCCe---E----EEEecCCCCCCcccccccceeeeeecC-CCCeEEEEEE
Confidence 01126999999998888999999997542 2 6679976653110 0011111111221 2478999999
Q ss_pred EeCCeEEEEccCC
Q 008242 515 IDHSIVESFGVGG 527 (573)
Q Consensus 515 vD~S~vEVFvn~G 527 (573)
||+||||||||||
T Consensus 425 vD~ssvEvf~ndG 437 (437)
T smart00640 425 VDHSSVEIFANGG 437 (437)
T ss_pred EeceEEEEEeCCC
Confidence 9999999999987
No 5
>PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure []. ; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 3UGG_A 3UGH_B 3UGF_B 1Y9M_A 1Y4W_A ....
Probab=100.00 E-value=1.2e-74 Score=599.58 Aligned_cols=300 Identities=41% Similarity=0.821 Sum_probs=247.8
Q ss_pred eecCCCCCccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCCCCCCccCCceEeeeEEEcCCC
Q 008242 50 HFQPPKNWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGCWSGSATILPGE 129 (573)
Q Consensus 50 H~~p~~gw~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~d~~gv~sGsav~~~dg 129 (573)
||+|+.||||||||++|++|+||||||++|+++.||+++||||+|+|||||+++|+||.|++.+|+.|||||||+++ ++
T Consensus 1 H~~p~~gw~NDPnG~~~~~G~yHlFyQ~~P~~~~~g~~~WgHa~S~Dlv~W~~~~~aL~P~~~~d~~g~~SGs~~~~-~~ 79 (308)
T PF00251_consen 1 HFTPPKGWMNDPNGLVYYDGKYHLFYQYNPFGPEWGNMHWGHATSKDLVHWEHLPVALPPDEEYDADGCFSGSAVVD-DD 79 (308)
T ss_dssp SBB-SSEEEEEEEEEEEETTEEEEEEEEETTSSSS-SBEEEEEEESSSSSEEEEEEEE-SSSGGGTTEEEEEEEEEE-TT
T ss_pred CCCCCCCCeECCccCeEeCCEEEEEeccCCCCcccceeEEEEEECCCCCCceeCCceEcccccCCcCccCcceEEEE-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 66
Q ss_pred ceEEEEcccCCCCceeEEEEEEcCCCCCccceeEecC-CCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecCC
Q 008242 130 KPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSP-KNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINR 208 (573)
Q Consensus 130 ~~~l~YTg~~~~~~~~q~lA~s~d~~~~~l~~w~k~~-~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~~ 208 (573)
++++||||+...+.+.|++|+|.|.+ ++|+|++ +||||..+. ++ ...+||||+|+|.+ +++|+|++|++...
T Consensus 80 ~~~~~YTg~~~~~~~~q~~A~s~d~~----~~w~k~~~~~pvi~~~p-~~-~~~~~RDP~v~~~~-~~~~~m~~g~~~~~ 152 (308)
T PF00251_consen 80 NLVLFYTGNNRDGKQVQCLAYSTDDG----ITWTKYPQGNPVIPEPP-PG-DTTDFRDPKVFWRE-DGRWYMLLGAGRDG 152 (308)
T ss_dssp CEEEEEEEEETTTEEEEEEEEESSTT----SSEEE-TTTCESBESSS-TT-SCTSEEEEEEEEEC-TTEEEEEEEEEETT
T ss_pred EEEEEEeccCCCCCeEEEEEEECCCC----CceEEcCCCCcEEEecc-cC-CCCccccCeEEEec-CCEEEEEEeccccC
Confidence 99999999987668999999996654 8999998 499997530 33 67899999988884 69999999999888
Q ss_pred eeEEEEEEeCCCCCCEEcccccccCC-CCCccccCceEEeccCCCCCccccCCCCCceeEEEEec----CCCCceeEEEE
Q 008242 209 KGLAILYRSKDFVHWIKAKHPLHSVK-GTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSL----DDTKHEYYTVG 283 (573)
Q Consensus 209 ~G~i~ly~S~Dl~~W~~~~~~~~~~~-~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~----~~~~~~~Y~vG 283 (573)
.|+|++|+|+||++|++.+.+..... .+.||||||||+|+..+.. ....+|||++|. .....+.|++|
T Consensus 153 ~g~i~~y~S~Dl~~W~~~~~l~~~~~~~g~~~ECPdlf~l~~~~~~-------~~~~~~vl~~s~~g~~~~~~~~~Y~vG 225 (308)
T PF00251_consen 153 RGCILLYTSDDLIHWEYLGPLFIPGDNGGGMWECPDLFPLDGKGDG-------TGKWVWVLIFSPQGIEDNGHGTYYMVG 225 (308)
T ss_dssp EEEEEEEEESSSSSEEEEEEESEEETTTSSEEEEEEEEEEEBTTSS-------SEEEEEEEEEEEESTTTTTTEEEEEEE
T ss_pred cceEEEEEcCCcccCceeCcccccccccccccccceEEEECCcccc-------cceEEEEEEecccccccccccceEEeE
Confidence 89999999999999999987554433 4789999999999954110 112357899998 34567899999
Q ss_pred EEeCCCCeeecCCCCcCCCCccccccCC-CccceeEecCCCCcEEEEEeccCCCCC-CCCCCCCccccccccEEEEEecC
Q 008242 284 TYSTAKDRYVPDEGSVESDSGLRFDYGK-YYASKTFFDGAKNRRVLWGWVNESSSV-NDDVKKGWAGIQAIPRKLWLDKS 361 (573)
Q Consensus 284 ~~d~~~~~f~~~~~~~~~~~~~~lD~G~-fYA~qt~~d~~~grri~~gW~~~~~~~-~~~~~~gW~G~lslPRel~l~~~ 361 (573)
++|..+.+|+++.. ..++||+|+ |||+|+|.++.++||||||||++++.. ....+.+|+|+|||||||+|+++
T Consensus 226 ~~d~~~~~f~~~~~-----~~~~lD~G~dfYA~qtf~~~~~~r~i~~gW~~~~~~~~~~~~~~gW~g~lslPR~l~l~~~ 300 (308)
T PF00251_consen 226 DFDFDGGTFTPDDS-----SFQRLDYGFDFYAPQTFYDPDGGRRILIGWMGEWDYNADDYPTYGWAGCLSLPRELTLKDE 300 (308)
T ss_dssp EEETTTTEEEESST-----TSEESBSSSS-EEEEEEEETTTTEEEEEEEES-TTTHHHHCHGHTEE-EE---EEEEEETT
T ss_pred EecCCCCeeeeecc-----ccceeccCccccCCchhcCCCcCcEEEEEEecCCCcccccCCCCCCccEEEeCEEEEEEEC
Confidence 99877789987621 368999999 999999999754599999999999874 22336899999999999999764
Q ss_pred CCeEEecc
Q 008242 362 GKHLVQWP 369 (573)
Q Consensus 362 g~~L~q~P 369 (573)
+++|+|+|
T Consensus 301 ~~~L~q~P 308 (308)
T PF00251_consen 301 GGRLYQKP 308 (308)
T ss_dssp SSSEEEEE
T ss_pred CCeEEEcC
Confidence 55799998
No 6
>cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases. Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catal
Probab=100.00 E-value=2.9e-66 Score=534.54 Aligned_cols=286 Identities=40% Similarity=0.725 Sum_probs=245.1
Q ss_pred CCccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCCCCCCccCCceEeeeEEEcCCCceEEEE
Q 008242 56 NWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIFY 135 (573)
Q Consensus 56 gw~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~d~~gv~sGsav~~~dg~~~l~Y 135 (573)
||||||||++|++|+||||||++|.++.|++++||||+|+||+||+++++||.|+..+|..|||||||+++.+|+++|||
T Consensus 1 gw~nDPng~~~~~G~yhlfyq~~p~~~~~~~~~wgha~S~Dlv~W~~~~~al~p~~~~d~~g~~sGsav~~~~g~~~~~Y 80 (298)
T cd08996 1 GWMNDPNGLVYFNGKYHLFYQYNPFGPVWGNMHWGHATSKDLVHWEHLPVALAPDDPYDSGGCFSGSAVVDDNGKLVLFY 80 (298)
T ss_pred CCcccCCeeeEECCEEEEEEcCCCCCCCCCCcEEEEEEecCccceeECCcccCCCCcccCCeEEeCeEEEcCCCcEEEEE
Confidence 89999999999999999999999999999999999999999999999999999988889999999999986449999999
Q ss_pred cccCC---CCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeec-CCeeE
Q 008242 136 TGIDP---HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI-NRKGL 211 (573)
Q Consensus 136 Tg~~~---~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~-~~~G~ 211 (573)
||... .+.+.|++|+|+|. +++|+|...+|++.++ .....+||||+|++. +|+|+|+++++. +..|+
T Consensus 81 Tg~~~~~~~~~~~~~lA~S~dd----g~~w~k~~~~~~~~~~---~~~~~~~RDP~V~~~--~g~~~m~~g~~~~~~~~~ 151 (298)
T cd08996 81 TGNVKLDGGRRQTQCLAYSTDD----GRTFTKYEGNPVIPPP---DGYTTHFRDPKVFWH--DGKWYMVLGAGTEDGTGR 151 (298)
T ss_pred eceeCCCCCceEEEEEEEEcCC----CCEEEECCCCceEcCC---CCCCCcccCCeEEeE--CCEEEEEEEEEecCCCcE
Confidence 99874 46789999999853 3899999888888632 234678999997665 489999999986 35689
Q ss_pred EEEEEeCCCCCCEEccccc-ccCCCCCccccCceEEeccCCCCCccccCCCCCceeEEEEecCCC------CceeEEEEE
Q 008242 212 AILYRSKDFVHWIKAKHPL-HSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDT------KHEYYTVGT 284 (573)
Q Consensus 212 i~ly~S~Dl~~W~~~~~~~-~~~~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~~~------~~~~Y~vG~ 284 (573)
|.+|+|+||++|++.+.+. .....+.|||||++|++++. .||||++|.+.. ..+.|++|+
T Consensus 152 i~ly~S~Dl~~W~~~~~~~~~~~~~~~~~EcP~l~~l~~~-------------~k~vL~~s~~~~~~~~~~~~~~y~~G~ 218 (298)
T cd08996 152 ILLYRSDDLKNWEYLGELLTSLGDFGYMWECPDLFPLDVE-------------GKWVLIFSPQGLEPEGNGSGTGYLVGD 218 (298)
T ss_pred EEEEECCCCCCCEEcceecccCCCccceEeCCcEEEECCC-------------CeEEEEECCCCCCCCCCccceEEEEEE
Confidence 9999999999999987542 22345679999999999842 299999998743 457999999
Q ss_pred EeCCCCeeecCCCCcCCCCccccccCC-CccceeEecCCCCcEEEEEeccCCCCCCCCCCCCccccccccEEEEEecCCC
Q 008242 285 YSTAKDRYVPDEGSVESDSGLRFDYGK-YYASKTFFDGAKNRRVLWGWVNESSSVNDDVKKGWAGIQAIPRKLWLDKSGK 363 (573)
Q Consensus 285 ~d~~~~~f~~~~~~~~~~~~~~lD~G~-fYA~qt~~d~~~grri~~gW~~~~~~~~~~~~~gW~G~lslPRel~l~~~g~ 363 (573)
+++. .|+++.. ..++||+|+ |||||+|.++ ++|+||||||++++...+..+.+|+|+|||||+|+|++++
T Consensus 219 ~~~~--~~~~~~~-----~~~~lD~G~dfYA~q~~~~~-~~r~i~~gW~~~~~~~~~~~~~~w~g~ls~pr~l~l~~~~- 289 (298)
T cd08996 219 FDGT--TFTFDHT-----EFGELDYGFDFYAPQTFVDP-DGRRILIGWMGNWDYEYPTPEDGWAGCLTLPRELSLKDGG- 289 (298)
T ss_pred EECC--CCeEecC-----CceEecCCCCeEeCceeeCC-CCCEEEEEEecCCCcCCCCCCCCceeeeEeCEEEEEccCC-
Confidence 9975 5655411 257899998 9999999986 7999999999999987777889999999999999998755
Q ss_pred eEEecchHH
Q 008242 364 HLVQWPVVE 372 (573)
Q Consensus 364 ~L~q~Pv~e 372 (573)
+|.|+|++|
T Consensus 290 ~l~~~P~~e 298 (298)
T cd08996 290 RLYQRPVRE 298 (298)
T ss_pred EEEEEeCCC
Confidence 799999975
No 7
>cd08995 GH32_Aec43_like Glycosyl hydrolase family 32. This glycosyl hydrolase family 32 (GH32) includes characterized as well as uncharacterized proteins. GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an a
Probab=100.00 E-value=9.5e-55 Score=444.98 Aligned_cols=267 Identities=28% Similarity=0.476 Sum_probs=221.7
Q ss_pred cCCcceEEECCEEEEEeeeCCCCCCC--CCcEEEEEEeCCCCcceecCCCCCCC-CCccCCceEeeeEEEcCCCceEEEE
Q 008242 59 NDPNGVMIYKGIYHLFYQYNPKGAVW--GNIVWAHSTSKDLINWIPHDPAIYPS-QQSDINGCWSGSATILPGEKPAIFY 135 (573)
Q Consensus 59 nDPng~~~~~G~yHlfyq~~P~~~~~--g~~~Wgha~S~Dlv~W~~~~~al~P~-~~~d~~gv~sGsav~~~dg~~~l~Y 135 (573)
.|| .++|++|+||||||++|.+..| ++++||||+|+||+||++++++|.|. ..+|..|||||||+++ +|+++|||
T Consensus 1 ~d~-~~~~~~G~yhlfyq~~p~~~~~~~~~~~wgha~S~Dlv~W~~~~~al~~~~~~~d~~g~~sgs~~~~-~g~~~l~Y 78 (280)
T cd08995 1 GDP-MPFYDDGTFHIFYLHDPRNGPPEGLRHPWSLLTTKDLVNYEDHGEAIPRGGDEDDDDAIGTGSVIKG-EGTYHAFY 78 (280)
T ss_pred CCc-cceEECCEEEEEEEcCCCCCCcccCCceEEEEEccCcCccEECcceecCCCCcccccCceEeEEEee-CCEEEEEE
Confidence 488 7899999999999999999888 89999999999999999999999884 5677899999999875 89999999
Q ss_pred cccCCC--CceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeec-----CC
Q 008242 136 TGIDPH--NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI-----NR 208 (573)
Q Consensus 136 Tg~~~~--~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~-----~~ 208 (573)
||+... ..+.|++|+|.|+ ++|+|...+||+.++ +++...+||||+|++.+++|+|+|+++++. +.
T Consensus 79 Tg~~~~~~~~~~i~~A~S~D~-----~~w~k~~~~pv~~~~--~~~~~~~~rDP~Vf~~~~~g~y~m~~g~~~~~~~~~~ 151 (280)
T cd08995 79 TGHNLDGKPKQVVMHATSDDL-----ITWTKDPEFILIADG--EGYEKNDWRDPFVFWNEEEGCYWMLLATRLLDGPYNR 151 (280)
T ss_pred EEECCCCCCcEEEEEEECCCC-----CccEECCCCeecCCc--cccccCCccCCcEEEcCCCCeEEEEEEeccCCCCCCC
Confidence 998642 5678999999874 799998778998744 555567899999776645799999999875 35
Q ss_pred eeEEEEEEeCCCCCCEEcccccccCCCCCccccCceEEeccCCCCCccccCCCCCceeEEEEecCC-CCceeEEEEEEeC
Q 008242 209 KGLAILYRSKDFVHWIKAKHPLHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDD-TKHEYYTVGTYST 287 (573)
Q Consensus 209 ~G~i~ly~S~Dl~~W~~~~~~~~~~~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~~-~~~~~Y~vG~~d~ 287 (573)
.|+|.+|+|+||++|++.+ ++.......|||||++|+++ | +|||++|.+. .....|++|+..
T Consensus 152 ~g~i~~~~S~Dl~~W~~~~-~~~~~~~~~~~E~P~l~~~~--g-------------~~~L~~s~~~~~~~~~Y~~~~~~- 214 (280)
T cd08995 152 RGCIALFTSKDLKNWEYEE-PFYAPGLYFMPECPDLFKMG--D-------------WWYLVYSEFSENRKTHYRVSKSP- 214 (280)
T ss_pred CeEEEEEEeCCcCcceecC-ceecCCCcceeecceEEEEC--C-------------EEEEEEEeccCCCcEEEEEeCCC-
Confidence 6899999999999999986 44444456799999999997 5 8999999763 356789999622
Q ss_pred CCCeeecCCCCcCCCCccccccCC-CccceeEecCCCCcEEEEEeccCCCCCCCCCCCCccccccccEEEEEecCCC
Q 008242 288 AKDRYVPDEGSVESDSGLRFDYGK-YYASKTFFDGAKNRRVLWGWVNESSSVNDDVKKGWAGIQAIPRKLWLDKSGK 363 (573)
Q Consensus 288 ~~~~f~~~~~~~~~~~~~~lD~G~-fYA~qt~~d~~~grri~~gW~~~~~~~~~~~~~gW~G~lslPRel~l~~~g~ 363 (573)
.+.|.... ...|| |+ |||||+|.++ |||||||||++++...++.+.+|+|||| ||+|.+.+||.
T Consensus 215 -~g~~~~~~-------~~~~d-g~dfYA~~~~~~~--~r~i~~gw~~~~~~~~~~~~~~w~~~l~-~~~~~~~~~g~ 279 (280)
T cd08995 215 -FGPWRAPD-------DDTFD-GRAFYAAKTASDG--TRRFLFGWVPTKAGNDDDGNWEWGGNLV-VHELIQNEDGT 279 (280)
T ss_pred -CCCeEcCC-------cCccC-cccccceeEEEeC--CeEEEEEEecCCCCcccccCCccceEEE-eeEEEECCCCc
Confidence 23454322 23589 98 9999999985 8999999999998877777899999998 67888877773
No 8
>cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J. This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named inverta
Probab=100.00 E-value=7e-38 Score=318.25 Aligned_cols=243 Identities=27% Similarity=0.393 Sum_probs=191.8
Q ss_pred cCCcceEEECCEEEEEeeeCCCCCCCC-CcEEEEEEeCCCCcceecCCCC--CCCCCccCCceEeeeEEEcCCCceEEEE
Q 008242 59 NDPNGVMIYKGIYHLFYQYNPKGAVWG-NIVWAHSTSKDLINWIPHDPAI--YPSQQSDINGCWSGSATILPGEKPAIFY 135 (573)
Q Consensus 59 nDPng~~~~~G~yHlfyq~~P~~~~~g-~~~Wgha~S~Dlv~W~~~~~al--~P~~~~d~~gv~sGsav~~~dg~~~l~Y 135 (573)
-||+.++ |+||||||++|.+..++ ..+|+||+|+||+||++.+.+| .|...+|..+||+|+++.+.+|+++|||
T Consensus 7 ~~~~~~~---g~yhlfy~~~~~~~~~~~~~~~~~a~S~D~~~w~~~~~~l~~~~~~~~~~~~~~~p~v~~~~dg~~~~~Y 83 (276)
T cd08979 7 FNPAVVV---GKYHLFYLAAPRGGGDGNTSRIGAASSDDGTWWTRPPAPLPPGPPGSFDDGGVWTPSVVRDPDGTYRMFY 83 (276)
T ss_pred cCCceEe---eeEEEEEEccCcCcCCCCcceeEEEEcCCCCccEECCcCccCCCCCchhcCCeEcceEEEcCCCeEEEEE
Confidence 3665444 89999999999987644 5668999999999999999887 5667788899999999986449999999
Q ss_pred cccCC--CCceeEEEEEEcCCCCCccceeEecCCCccc-----cCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeec-C
Q 008242 136 TGIDP--HNRQVQNLAVPKNLSDPYLREWVKSPKNPLM-----APDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI-N 207 (573)
Q Consensus 136 Tg~~~--~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi-----~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~-~ 207 (573)
|+... ...+.|++|+|+|. .+|+|.+.+|++ ..+ ......++|||+|++.+.+|+|+|++++.. +
T Consensus 84 t~~~~~~~~~~~i~~A~S~D~-----~~w~~~~~~~~~~~~~~~~~--~~~~~~~~~dP~v~~~~~~g~y~m~~~~~~~~ 156 (276)
T cd08979 84 TGYDRPKGAVQRIGLATSKDL-----IHWTKHGPNPVPRWYESGNP--GPWDDHAWRDPAVVRDEEGGGWRMYYGARDAD 156 (276)
T ss_pred ecccCCCCCcceEEEEECCCC-----CceEECCCCcceeeeecCCC--CCcccccccccEEEEECCCCEEEEEEEeEccC
Confidence 99874 46688999999884 799998766653 122 223456899999776633489999999875 3
Q ss_pred CeeEEEEEEeCCCCCCEEccccc--ccCCCCCccccCceEEeccCCCCCccccCCCCCceeEEEEecCC-CCceeEEEEE
Q 008242 208 RKGLAILYRSKDFVHWIKAKHPL--HSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDD-TKHEYYTVGT 284 (573)
Q Consensus 208 ~~G~i~ly~S~Dl~~W~~~~~~~--~~~~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~~-~~~~~Y~vG~ 284 (573)
..++|.+|+|+||.+|++.+.+. .......++|||++|+++ | +|+|+++... .....|.+|.
T Consensus 157 ~~~~i~~a~S~D~~~W~~~~~~~~~~~~~~~~~~e~P~~~~~~--g-------------~~~l~~~~~~~~~~~~y~vg~ 221 (276)
T cd08979 157 ERGAIGLATSPDLIHWTPVPPPPGPRTGYDDGQLEVPQVVKID--G-------------RWYLLYSGRNEDAKTGYRVGT 221 (276)
T ss_pred CCcEEEEEECCCCCcceECCCCCCCCCcccCCcCccceEEEEC--C-------------EEEEEEEecCccCCccEEEEe
Confidence 46789999999999999987542 222345799999999997 5 8999998764 4567899998
Q ss_pred EeCCCCeeecCCCCcCCCCccccccCC-CccceeEecCCCCcEEEEEeccCC
Q 008242 285 YSTAKDRYVPDEGSVESDSGLRFDYGK-YYASKTFFDGAKNRRVLWGWVNES 335 (573)
Q Consensus 285 ~d~~~~~f~~~~~~~~~~~~~~lD~G~-fYA~qt~~d~~~grri~~gW~~~~ 335 (573)
++.. .+.|.. ...+|.|. |||+|++.+.+++|++++|||+++
T Consensus 222 ~~~~--~~~~~~-------~~~~~~g~~~ya~~~~~~~~~~~~~~~gw~~~~ 264 (276)
T cd08979 222 ALFG--PGRPLT-------LAELLDRTDLYAARPVPDGEGGGVVLEGFVQFG 264 (276)
T ss_pred cccC--Cccccc-------cccccCCCCceeEEeccccCCCcEEEEEEeecc
Confidence 7653 455432 35689998 999999987546899999999986
No 9
>cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68. Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32
Probab=100.00 E-value=2.7e-35 Score=299.86 Aligned_cols=269 Identities=28% Similarity=0.425 Sum_probs=204.4
Q ss_pred cCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCC----CCCCccCCceEeeeEEEcCCCceEEE
Q 008242 59 NDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIY----PSQQSDINGCWSGSATILPGEKPAIF 134 (573)
Q Consensus 59 nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~----P~~~~d~~gv~sGsav~~~dg~~~l~ 134 (573)
|||+ +++++|+||||||++|.+ +.++|+|++|+||+||++++.++. |...++..++|+|+++...+|+++||
T Consensus 1 ~DP~-i~~~~g~yyl~~~~~~~~---~~~~~~~~~S~Dl~~W~~~~~~~~~~~~~~~~~~~~~~wap~v~~~~~g~~~l~ 76 (286)
T cd08772 1 ADPN-LIKYNGTYYIFFSGDDKN---GNPGIAHATSKDLVNWTDHPVALVWWARRGGPKDSGGIWAPSIVYIENGKFYLY 76 (286)
T ss_pred CCCe-EEEECCEEEEEEEccCCC---CCceEEEEECCCcCcceECCccchhhcccCCCCCCCcEecceEEEcCCCCEEEE
Confidence 7998 899999999999999875 678999999999999999998874 66677789999999998644999999
Q ss_pred EcccCC-CCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeec-CCeeEE
Q 008242 135 YTGIDP-HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI-NRKGLA 212 (573)
Q Consensus 135 YTg~~~-~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~-~~~G~i 212 (573)
||+... ...+.+++|+|+|.. ..|++...+||+.... .......+|||+|++. ++|+|||++++.. ...+.|
T Consensus 77 yt~~~~~~~~~~i~~a~s~d~~----~~~~~~~~~~~~~~~~-~~~~~~~~~Dp~v~~d-~dG~~y~~~~~~~~~~~~~i 150 (286)
T cd08772 77 YTDVSFTKNQQTIGVATAEDGN----GPWTDYIGGPVLPDNP-PAADVSNFRDPFVFED-DDGKWYLVFGSGDHHNFGGI 150 (286)
T ss_pred EEeecCCCCceeEEEEEcCCCC----CCCccccccccccCCC-CccccccccCCeEEEc-CCCCEEEEEccccCCCCCeE
Confidence 999763 356789999998863 3577665556664220 2223467999996544 5699999999865 245679
Q ss_pred EEEEeCCCCCCEEcccc--cccCCCCCccccCceEEeccCCCCCccccCCCCCceeEEEEecCC------CCceeEEEEE
Q 008242 213 ILYRSKDFVHWIKAKHP--LHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDD------TKHEYYTVGT 284 (573)
Q Consensus 213 ~ly~S~Dl~~W~~~~~~--~~~~~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~~------~~~~~Y~vG~ 284 (573)
.+++|+|+.+|+..+.+ ........++|||++|+++ | +|+|++|... .+...|++++
T Consensus 151 ~~~~s~d~~~w~~~~~~~~~~~~~~~~~~E~P~~~~~~--g-------------~~yL~~s~~~~~~~~~~y~~~~~~~~ 215 (286)
T cd08772 151 FLYESDDDTTWKKGSAELLISEGEGGKQIEGPGLLKKN--G-------------KYYLFYSINGTGRVDSTYSIGYARSE 215 (286)
T ss_pred EEEEcCCCCCcccccceeeEeeccCCCceeccEEEEEC--C-------------EEEEEEEcCCCcCCCCCcceEEEEcc
Confidence 99999999999987643 1223346799999999997 5 8999988654 3456788886
Q ss_pred EeCCCCeeecCCCCc-CCCCccccccCC-CccceeEecCCCCcEEEEEeccCCCCCCCCCCCCccccccccEEE
Q 008242 285 YSTAKDRYVPDEGSV-ESDSGLRFDYGK-YYASKTFFDGAKNRRVLWGWVNESSSVNDDVKKGWAGIQAIPRKL 356 (573)
Q Consensus 285 ~d~~~~~f~~~~~~~-~~~~~~~lD~G~-fYA~qt~~d~~~grri~~gW~~~~~~~~~~~~~gW~G~lslPRel 356 (573)
.+ .+.|.+..... ........|.+. +||+++|.++ +||++|++|+.+++.... ...+|+++|+|||++
T Consensus 216 ~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~ 285 (286)
T cd08772 216 SD--TGPYVPKSDTSGGLSLTGGNDGGVGPYHAAAFNDA-GGRVVLVYHAYNVQYADA-PTYGWGRSLAIPRLL 285 (286)
T ss_pred CC--CCCcccCCCCCCccccccccCCCCCCCccEEEECC-CCCEEEEEEeccCCcccc-ccCCCcccccccccc
Confidence 43 34665443110 000123457776 9999999986 799999999999876433 568999999999987
No 10
>cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase. Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic n
Probab=99.94 E-value=5.7e-25 Score=228.30 Aligned_cols=269 Identities=21% Similarity=0.278 Sum_probs=173.6
Q ss_pred cCCcceEE-ECCEEE-EEeeeCCCC----CCCCCcEEEEEEeCCCCcceecCCCCCCCCCccCCceEeeeEEEcCCCceE
Q 008242 59 NDPNGVMI-YKGIYH-LFYQYNPKG----AVWGNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGCWSGSATILPGEKPA 132 (573)
Q Consensus 59 nDPng~~~-~~G~yH-lfyq~~P~~----~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~d~~gv~sGsav~~~dg~~~ 132 (573)
-|..|-+. ++| || +|++..|.. ..|+.+||||++|+||+||++.+ +|.|++.+|..|||||||++..||+++
T Consensus 8 ~d~~g~~~~~~G-~~~vfaL~a~~~~~~~~rh~~~~wgh~~S~dlv~W~~~~-~l~p~~~~d~~g~wSGsa~~~~dg~~~ 85 (349)
T cd08997 8 QDRDGEVASYNG-YEVIFALTADRNLDPDDRHGDARIGYFYSRAGGNWIDGG-KVFPDGLSPGSREWSGSATLDDDGTVQ 85 (349)
T ss_pred ECCCCCEEEECC-EEEEEEEecCCCCCCCCCcCceEEEEEEeCCCCcccCCC-ccCCCCcccCCCeEcceEEEeCCCeEE
Confidence 35556444 677 56 899877764 46889999999999999999955 567888899999999999986679999
Q ss_pred EEEcccCC----CCceeEEEEEEcCCCCCccceeEecC--CCccccCCC------------CCCCCCCCccCCeeEEecC
Q 008242 133 IFYTGIDP----HNRQVQNLAVPKNLSDPYLREWVKSP--KNPLMAPDA------------MNQINTSSFRDPTTAWLGP 194 (573)
Q Consensus 133 l~YTg~~~----~~~~~q~lA~s~d~~~~~l~~w~k~~--~nPvi~~~~------------~~~~~~~~~RDP~V~~~~~ 194 (573)
|||||+.+ .+...|++|.+.+.. +..|.+.. ..+++.++. ++.....+||||+|+..++
T Consensus 86 lfYTg~~~~~~~~~~~~Q~ia~a~~~~---~~v~~~~~~~~~~lf~~Dg~~Yqt~~q~~~~~~~~~~~~fRDP~vf~d~~ 162 (349)
T cd08997 86 LFYTAVGRKGEPQPTFTQRLALARGTL---SVVNLSGFEDHHELFEPDGDLYQTDQQYEGTGAQGDIKAFRDPFVFEDPE 162 (349)
T ss_pred EEEeccccCCCCCCCceEEEEEEECCC---cceEecccCccceeeeCCCceEEeccccccccccCccCcccCCEEEecCC
Confidence 99999863 245778888776542 12333221 234443321 0122356899999754434
Q ss_pred CCeEEEEEeeecC-C---------------------------eeEEEEE--EeCCCCCCEEcccccccCCC-CCccccCc
Q 008242 195 DKRWRVIIGSKIN-R---------------------------KGLAILY--RSKDFVHWIKAKHPLHSVKG-TGMWECPD 243 (573)
Q Consensus 195 ~g~~~m~~g~~~~-~---------------------------~G~i~ly--~S~Dl~~W~~~~~~~~~~~~-~~~wEcPd 243 (573)
+|+|||++++... . .|+|.|+ +|+||.+|++.++ +.+... ..+||||+
T Consensus 163 ~G~~ymvfeant~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~G~IGia~~~s~dl~~W~~~~P-L~~a~~v~d~~E~P~ 241 (349)
T cd08997 163 TGKTYLLFEGNTAGERGSQECTEAELGRVLPDTVKPDGASYQNGNVGIAVAKNDDLTEWKLLPP-LLEANGVNDELERPH 241 (349)
T ss_pred CCcEEEEEEeccCCCCCccccccccccccccccccccccccccceEEEEEecCCCCCCcEEcCc-cccCCCcCCceEcce
Confidence 7999999998752 2 3667666 6679999999874 544332 45799999
Q ss_pred eEEeccCCCCCccccCCCCCceeEEEEecCCC---------CceeEEEEEEeCCCCeeecCCCCcCCCCccccccC--CC
Q 008242 244 FFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDT---------KHEYYTVGTYSTAKDRYVPDEGSVESDSGLRFDYG--KY 312 (573)
Q Consensus 244 lf~l~~~g~~~~~~~~~~~~~~~vl~~s~~~~---------~~~~Y~vG~~d~~~~~f~~~~~~~~~~~~~~lD~G--~f 312 (573)
+|+++ | ||+|+.|.... ...++++++ ...+.|.|.... ...|--- .-
T Consensus 242 v~~~~--g-------------k~yL~~s~~~~~~~~~~~~~~~~~g~vsd--sl~GP~~~~n~s-----glvl~~p~~~~ 299 (349)
T cd08997 242 VVFHN--G-------------KYYLFTISHRSTFAPGLSGPDGLYGFVSD--SLRGPYKPLNGS-----GLVLGNPTDAP 299 (349)
T ss_pred EEEEC--C-------------EEEEEEeCCcCccccccCCCCcEEEEEeC--CCCCCCccCCCC-----cceeCCCCCCc
Confidence 99998 6 88998884322 124455553 122346553211 1111000 13
Q ss_pred ccceeEecCCCCcEEEEEeccCCCCCCCCCCCCccccccccEEEEEe
Q 008242 313 YASKTFFDGAKNRRVLWGWVNESSSVNDDVKKGWAGIQAIPRKLWLD 359 (573)
Q Consensus 313 YA~qt~~d~~~grri~~gW~~~~~~~~~~~~~gW~G~lslPRel~l~ 359 (573)
|.+++..--++ -++...|.+..... ......|.++-.=.|.|+
T Consensus 300 ~~~ys~~~~p~--~lv~Sfid~~~~~~--~~~~~~gT~aPt~~l~~~ 342 (349)
T cd08997 300 FQTYSWYVMPN--GLVTSFIDNVGFAD--GGSRFGGTLAPTLKLNLK 342 (349)
T ss_pred cccceEEEECC--CEEEEEecccCCcc--cccccCCeeCCeEEEEEc
Confidence 44555544333 36667788776432 134566777655566664
No 11
>cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins. This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, f
Probab=99.89 E-value=2e-22 Score=207.36 Aligned_cols=192 Identities=21% Similarity=0.308 Sum_probs=143.6
Q ss_pred cceecCCCCCccCCcceEEE-CCEEEEEeeeCCCCCC---C-CCcEEEEEEeCCCC-cceecCCCCCCC--CCccCCceE
Q 008242 48 GYHFQPPKNWINDPNGVMIY-KGIYHLFYQYNPKGAV---W-GNIVWAHSTSKDLI-NWIPHDPAIYPS--QQSDINGCW 119 (573)
Q Consensus 48 ~~H~~p~~gw~nDPng~~~~-~G~yHlfyq~~P~~~~---~-g~~~Wgha~S~Dlv-~W~~~~~al~P~--~~~d~~gv~ 119 (573)
..+|..+..++.+|. +++. +|+||||||..|.+.. | ....||||+|+|+. +|+..+++|.|+ ..||+.+++
T Consensus 3 ~~~~~~~~~~~w~~~-vi~~~~g~y~lfy~~~~~~~~~~~~~~~~~i~~A~S~~~~g~w~~~g~vl~~~~~~~wd~~~~~ 81 (291)
T cd08994 3 DSGLEDEDYSVWGGS-IIKGPDGKYHLFASRWPEGLGFHGWLPYSEIVHAVSDTPEGPYTFQEVVLPGRGGGYWDARTTH 81 (291)
T ss_pred CceeeeCCeEEEecc-eEECCCCcEEEEEEEccCCCCCCcccccceEEEEEcCCCCCCcEEeeeEcCCCCCCcccCCCcc
Confidence 356888899999995 6665 5899999999887543 2 24569999999987 999999999887 468999999
Q ss_pred eeeEEEcCCCceEEEEcccCC-------CCceeEEEEEEcCCCCCccceeEecCCCccccCCC---------------C-
Q 008242 120 SGSATILPGEKPAIFYTGIDP-------HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDA---------------M- 176 (573)
Q Consensus 120 sGsav~~~dg~~~l~YTg~~~-------~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~---------------~- 176 (573)
+++++.. +|+++||||+... ...+.+++|+|.+. +.+|++. .+|||.+.. .
T Consensus 82 ~P~vi~~-~g~yyl~Y~~~~~~~~~~~~~~~~~ig~a~s~~~----~g~w~~~-~~pvl~~~~~~~~~~~~~~p~v~~~~ 155 (291)
T cd08994 82 NPTIKRF-DGKYYLYYIGNTDPGPRPGHRNNQRIGVAVSDSL----DGPWKRS-DQPILEPRPGGWDNLITSNPAVTRRP 155 (291)
T ss_pred CCeEEEE-CCEEEEEEEcccCCcccccCCCCceEEEEEeCCC----CCCcEEC-CCceecCCCCccccccccCCCeEEeC
Confidence 9999874 8999999999753 23467788888663 2467775 456663200 0
Q ss_pred -----------------------------C-C-------------CCCCCccCCeeEEecCCCeEEEEEeeecC----Ce
Q 008242 177 -----------------------------N-Q-------------INTSSFRDPTTAWLGPDKRWRVIIGSKIN----RK 209 (573)
Q Consensus 177 -----------------------------~-~-------------~~~~~~RDP~V~~~~~~g~~~m~~g~~~~----~~ 209 (573)
. + ....++|||+| |+ .+|+|||+++++.. ..
T Consensus 156 ~g~~~m~y~g~~~~~~~~~~~~gla~s~d~~g~~~~~~~~~v~~~~~~~~~~dP~V-~~-~~g~yym~~~~~~~~~~~~~ 233 (291)
T cd08994 156 DGSYLLVYKGGTYNPTKGNRKYGVAIADSPTGPYTKVSGPPFIEPGDNGNTEDPFV-WY-DKGQFHMIVKDMLGYVTGEK 233 (291)
T ss_pred CCCEEEEEeccccCCCCCcEEEEEEEeCCCCCCCEECCCCccccCCCCCceeCceE-EE-eCCEEEEEEeecccCcCCCC
Confidence 0 0 02245799995 66 46999999999763 46
Q ss_pred eEEEEEEeCCCCCCEEccccccc------C---CCCCccccCceE-Eec
Q 008242 210 GLAILYRSKDFVHWIKAKHPLHS------V---KGTGMWECPDFF-PVS 248 (573)
Q Consensus 210 G~i~ly~S~Dl~~W~~~~~~~~~------~---~~~~~wEcPdlf-~l~ 248 (573)
++|.+|+|+|+.+|++.+.+++. . ....+||||+++ +.+
T Consensus 234 ~~i~~a~S~Dg~~W~~~~~~~~~~~~~~~~~~~~~~~~~erP~v~~~~~ 282 (291)
T cd08994 234 GGGAYFRSKDGIHWKLAPGLAYSTTVEWTDGTTEDWGRLERPQVLLDED 282 (291)
T ss_pred ceEEEEECCCCCCceecCcceeeeeEEcCCCcccccccccCCEEEEcCC
Confidence 78999999999999998765321 1 135799999999 776
No 12
>cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function. This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.83 E-value=2.2e-19 Score=182.69 Aligned_cols=148 Identities=18% Similarity=0.198 Sum_probs=115.4
Q ss_pred CCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecC-CCCCC--CCCccCCceEeeeEEEcCCCceEEEEc
Q 008242 60 DPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHD-PAIYP--SQQSDINGCWSGSATILPGEKPAIFYT 136 (573)
Q Consensus 60 DPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~-~al~P--~~~~d~~gv~sGsav~~~dg~~~l~YT 136 (573)
|| ++++++|+||||||.++.. +..+||||+|+|++||++.+ +.|.| +..++..+|++++++. .+|+++|+||
T Consensus 2 nP-~v~~~~G~y~l~y~~~~~~---~~~~ig~A~S~Dg~~~~~~~~~~i~p~~~~~~~~~gv~dP~v~~-~~g~y~m~Yt 76 (268)
T cd08993 2 NP-AVVYDNGEFYLLYRAAGND---GVIRLGLARSRDGLHFEIDPDPPVWPPPEDGFEEGGVEDPRIVK-IDDTYYITYA 76 (268)
T ss_pred cC-eEEEECCEEEEEEEEECCC---CceEEEEEEECCCceEEECCcceEcCCCCCcccccCccCcEEEE-ECCEEEEEEE
Confidence 78 7899999999999987643 57899999999999999975 34666 5678889999999987 4999999999
Q ss_pred ccCC-CCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeec---CCeeEE
Q 008242 137 GIDP-HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI---NRKGLA 212 (573)
Q Consensus 137 g~~~-~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~---~~~G~i 212 (573)
+... ...+.+++|.|+|. .+|+|.. . ++. + ..||+.++....+|+|+|++.... +..++|
T Consensus 77 a~~~~~~~~~i~lA~S~D~-----~~W~~~~-~-~~~-~--------~~~d~~~~p~~~~g~y~m~~r~~~~~~~~~~~I 140 (268)
T cd08993 77 ARPNAPNGTRIGLATTKDF-----ITFERLG-T-SLV-P--------NNRDGILFPEKINGKYVMLHRPFEYGGTSPPDM 140 (268)
T ss_pred ccCCCCCCcEEEEEEeCCc-----ceEEEec-c-cCC-C--------CCCCEEEeeEEECCEEEEEEccccCCCCCCCcE
Confidence 9763 34578999999884 8999973 2 221 1 137887432224799999996542 246789
Q ss_pred EEEEeCCCCCCEEccc
Q 008242 213 ILYRSKDFVHWIKAKH 228 (573)
Q Consensus 213 ~ly~S~Dl~~W~~~~~ 228 (573)
.+++|+||.+|+..+.
T Consensus 141 ~lA~S~Dl~~W~~~~~ 156 (268)
T cd08993 141 WLSFSPDLVHWGNHRF 156 (268)
T ss_pred EEEECCCcCccCCCeE
Confidence 9999999999997653
No 13
>cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.81 E-value=1.1e-18 Score=178.19 Aligned_cols=191 Identities=18% Similarity=0.250 Sum_probs=138.8
Q ss_pred CCCccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCCCC-CCccCCceEeeeEEEcCCCceEE
Q 008242 55 KNWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPS-QQSDINGCWSGSATILPGEKPAI 133 (573)
Q Consensus 55 ~gw~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~-~~~d~~gv~sGsav~~~dg~~~l 133 (573)
.||++||+ +++++|+||||++..+.+. ....|.+++|+||+||++++.+|.+. ..++..++|+++++.. +|+++|
T Consensus 5 ~g~~~DP~-i~~~~g~yY~~~t~~~~~~--~~~~~~~~~S~Dl~~W~~~g~~l~~~~~~~~~~~~wAP~v~~~-~g~yy~ 80 (275)
T cd09004 5 PGWYADPE-IRIFGGTYYIYPTSDGAGG--EQTPFDVFSSKDLVNWTKEGIILDMADVSWANRAAWAPSVIER-NGKYYF 80 (275)
T ss_pred CCCCCCCC-eEEECCEEEEEEeccCCCC--CeeEEEEEECCCCCCceECcccccccCCcccCCCcCCCeEEEE-CCEEEE
Confidence 46899996 5778999999998765432 25689999999999999999988764 4566789999999874 899999
Q ss_pred EEcccCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecCCeeEEE
Q 008242 134 FYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLAI 213 (573)
Q Consensus 134 ~YTg~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~~~G~i~ 213 (573)
|||+. +.+++|+|++.. ..|++..++|++.+. . .....+||.|+ .+++|+|||++++. +.+.
T Consensus 81 yys~~-----~~i~va~s~~p~----gp~~~~~~~p~~~~~--~--~~~~~iDp~vf-~d~dG~~yl~~~~~----~~~~ 142 (275)
T cd09004 81 YFSAN-----GGIGVAVADSPL----GPFKDALGKPLIDKF--T--FGAQPIDPDVF-IDDDGQAYLYWGGW----GHCN 142 (275)
T ss_pred EEEcC-----CcEEEEEeCCCC----CCCCCCCCCccccCC--c--CCCCccCCCeE-ECCCCCEEEEEcCc----CCEE
Confidence 99986 357899987753 468874467887543 1 23568999965 54689999999863 2233
Q ss_pred EE-EeCCCCCCEEcccccccCCCCCccccCceEEeccCCCCCccccCCCCCceeEEEEecCCCCceeEEEE
Q 008242 214 LY-RSKDFVHWIKAKHPLHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDTKHEYYTVG 283 (573)
Q Consensus 214 ly-~S~Dl~~W~~~~~~~~~~~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~~~~~~~Y~vG 283 (573)
++ .|+|+.+|......+ ......+.|||.+|+.+ | +++|++|........|.++
T Consensus 143 i~~l~~d~~~~~~~~~~~-~~~~~~~~EgP~i~k~~--G-------------~yyl~ys~~~~~~~~Y~~~ 197 (275)
T cd09004 143 VAKLNEDMISFDGERDGS-EITPKNYFEGPFMFKRN--G-------------IYYLMWSEGGWTDPDYHVA 197 (275)
T ss_pred EEEECCCcccccCcceee-eccCCCceecceEEEEC--C-------------EEEEEEECCCCCCCCceEE
Confidence 33 478898887543221 12234579999999997 6 8888888754322234444
No 14
>cd08984 GH43_5 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.80 E-value=2.4e-18 Score=177.47 Aligned_cols=162 Identities=20% Similarity=0.275 Sum_probs=123.7
Q ss_pred ccCCcceEEECCEEEEEeeeCCCCC--CCCCcEEEEEEeCCCCcceecCCCCCCCCCccCCceEeeeEEEcCCCceEEEE
Q 008242 58 INDPNGVMIYKGIYHLFYQYNPKGA--VWGNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIFY 135 (573)
Q Consensus 58 ~nDPng~~~~~G~yHlfyq~~P~~~--~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~d~~gv~sGsav~~~dg~~~l~Y 135 (573)
+.+| -+++++|+||||||++|... .++.++|+||+|+||++|++.++++.+ ..++++++++.+.+|+++|||
T Consensus 79 ~WAP-~v~~~~G~y~myys~~~~~~~~~~~~~~i~~a~S~Dl~~w~~~~~~~~~-----~~~~iD~~vf~~~dg~~yl~y 152 (294)
T cd08984 79 FWAP-EVVWHGGVYHMYVTYIPGVPPDWGGPRRIVHYTSPNLWDWTFVGRVDLD-----SDRVIDACVFKLPDGRWRMWY 152 (294)
T ss_pred eeCc-eEEEECCEEEEEEEecCCCCcccCCCcEEEEEECCCcCcceECCccccC-----CCCcEEeEEEEeCCCEEEEEE
Confidence 4578 47889999999999998753 346789999999999999998876322 357899999886679999999
Q ss_pred cccCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecCCeeEEEEE
Q 008242 136 TGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLAILY 215 (573)
Q Consensus 136 Tg~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~~~G~i~ly 215 (573)
|+.. ..+.+++|.|.|. .+|++. .+++... ..++|+|+ + .+|+|||+++. ..| +.+|
T Consensus 153 ~~~~--~~~~~~~a~s~D~-----~~w~~~--~~~i~~~--------~~EgP~v~-k-~~g~yym~~~~---~~g-~~~~ 209 (294)
T cd08984 153 KDER--RGSTTYAADSEDL-----YHWTVE--GPVLGDR--------PHEGPNVF-R-WKGYYWMIIDE---WKG-LGVY 209 (294)
T ss_pred ECCC--CCeEEEEEECCCC-----CEEEeC--CccccCC--------CCCCCCee-E-ECCEEEEEEcC---Cce-EEEE
Confidence 9864 2345688988874 799985 3565422 24799964 4 47899999754 234 6799
Q ss_pred EeCCCCCCEEcccccccCC----CCCccccCceEEec
Q 008242 216 RSKDFVHWIKAKHPLHSVK----GTGMWECPDFFPVS 248 (573)
Q Consensus 216 ~S~Dl~~W~~~~~~~~~~~----~~~~wEcPdlf~l~ 248 (573)
+|+|+.+|++.+.++.... ...+++||++++.+
T Consensus 210 ~S~D~~~W~~~~~~l~~~~~~~~~~~~~~H~~i~~~~ 246 (294)
T cd08984 210 RSKDAENWERQGGILLKPGTRPDDGAKGRHADVVVTG 246 (294)
T ss_pred ECCChhhcEECCeeeccCCCCccccccccCCcEEEeC
Confidence 9999999999987665321 23467999999886
No 15
>cd08999 GH43_ABN_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=99.76 E-value=4.4e-17 Score=167.09 Aligned_cols=186 Identities=20% Similarity=0.186 Sum_probs=131.9
Q ss_pred CCccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCCCCCC-ccCCceEeeeEEEcCCCceEEE
Q 008242 56 NWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQ-SDINGCWSGSATILPGEKPAIF 134 (573)
Q Consensus 56 gw~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~-~d~~gv~sGsav~~~dg~~~l~ 134 (573)
+.+-|| .+++++|+|+||+...+. .+|++++|+||+||+..+.+|.+... ++..++|.++++. .+|+++|+
T Consensus 6 ~~~~DP-~i~~~~g~yy~~~t~~~~------~~i~~~~S~Dl~~W~~~g~~l~~~~~~~~~~~~waP~v~~-~~g~y~~~ 77 (287)
T cd08999 6 GDFPDP-SVIRVDGTYYAYATNGNG------PNVPIATSTDLVNWTYLGDAFPKLPRWWTGGDFWAPDVSY-VNGKYVLY 77 (287)
T ss_pred CCCCCC-eEEEECCEEEEEEeCCCC------CcEEEEECCCCCCcEECCcccCCCCCcccCCCccCceEEE-ECCEEEEE
Confidence 356799 577789999999986532 67999999999999999988877655 4457788888876 48999999
Q ss_pred EcccCCC-CceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecCCee---
Q 008242 135 YTGIDPH-NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKG--- 210 (573)
Q Consensus 135 YTg~~~~-~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~~~G--- 210 (573)
|++.... ..+.+++|+|.|.. ..|++....++..+. .....+||.|+ .+++|+|||++++.....|
T Consensus 78 y~~~~~~~~~~~i~~a~s~~p~----g~~~~~~~~~~~~~~-----~~~~~~Dp~v~-~d~dG~~Yl~~~~~~~~~~~~~ 147 (287)
T cd08999 78 YSARDKGSGGQCIGVATADSPL----GPFTDHGKPPLCCPE-----GEGGAIDPSFF-TDTDGKRYLVWKSDGNSIGKPT 147 (287)
T ss_pred EEeecCCCCCEEEEEEECCCCC----CCCccCCcceEecCC-----CCCCccCCCeE-ECCCCCEEEEEeccCCCCCCCc
Confidence 9998652 45667888887642 468876433333222 23457999965 5468999999987542211
Q ss_pred EEEEE-EeCCCCCCEEcccccccC---CCCCccccCceEEeccCCCCCccccCCCCCceeEEEEecCC
Q 008242 211 LAILY-RSKDFVHWIKAKHPLHSV---KGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDD 274 (573)
Q Consensus 211 ~i~ly-~S~Dl~~W~~~~~~~~~~---~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~~ 274 (573)
.|.+. .|+|+.+|......+... ....++|||.+|+.+ | +|+|++|...
T Consensus 148 ~i~~~~ls~d~~~~~~~~~~i~~~~~~~~~~~~EgP~i~k~~--g-------------~yyl~~S~~~ 200 (287)
T cd08999 148 PIYLQELSADGLTLTGEPVRLLRNDEDWEGPLVEAPYLVKRG--G-------------YYYLFYSAGG 200 (287)
T ss_pred eEEEEEeCCCCccccCCcEeeecccccccCCceEeeEEEEEC--C-------------EEEEEEEcCC
Confidence 24444 378998886443222211 134589999999997 6 8999988653
No 16
>cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of
Probab=99.70 E-value=6.9e-16 Score=157.50 Aligned_cols=195 Identities=15% Similarity=0.201 Sum_probs=139.1
Q ss_pred CCcceEEECCEEEEEeeeCCCCCC---CCCcEEEEEEeCCCCcceecCCCCCCCC--CccCCceEeeeEEEcCCCceEEE
Q 008242 60 DPNGVMIYKGIYHLFYQYNPKGAV---WGNIVWAHSTSKDLINWIPHDPAIYPSQ--QSDINGCWSGSATILPGEKPAIF 134 (573)
Q Consensus 60 DPng~~~~~G~yHlfyq~~P~~~~---~g~~~Wgha~S~Dlv~W~~~~~al~P~~--~~d~~gv~sGsav~~~dg~~~l~ 134 (573)
|| .+++++|+||||.......+. .....|..++|+||+||+..+.+|.+.. .++..++|.++++. .+|+++||
T Consensus 2 DP-~~~~~~~~yy~~~t~~~~~~~~~~~~~~~~~v~~S~Dl~~W~~~g~~l~~~~~~~~~~~~~wAP~i~~-~~g~yy~y 79 (274)
T cd08990 2 DP-AAHVFNGRVYIYTSHDEAGGGGDDFCMNDYHVFSSPDLVNWTDHGVILSVTDFPAWAKGQAWAPDVVE-KNGKYYLY 79 (274)
T ss_pred CC-CcEEECCEEEEEeCCCCCCCCCCccccceEEEEECCCCCCcEECcccccCCCCCccccCCcCcCeEEE-ECCEEEEE
Confidence 89 577789999999987654432 3345699999999999999999887543 36778999999987 58999999
Q ss_pred EcccCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecCCeeEEEE
Q 008242 135 YTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLAIL 214 (573)
Q Consensus 135 YTg~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~~~G~i~l 214 (573)
|++......+.+++|+|+|.. ..|++....|++... + ......||.++ .+++|++||++++. .+....
T Consensus 80 y~~~~~~~~~~igva~s~~p~----Gpw~~~~~~~~~~~~--~--~~~~~iDp~vf-~d~dG~~yl~~~~~---~~~~~~ 147 (274)
T cd08990 80 FPARDKDGGFAIGVAVSDSPA----GPFKDAGGPILITTP--S--GGWYSIDPAVF-IDDDGQAYLYWGGG---LGLRVA 147 (274)
T ss_pred EEeecCCCceEEEEEEeCCCC----CCCCCCCCccccccC--C--CCCCccCCcEE-ECCCCCEEEEECCc---CCEEEE
Confidence 998754445678899997753 468876545555322 1 23457899964 54689999999864 222233
Q ss_pred EEeCCCCCCEEccccccc-----CCCCCccccCceEEeccCCCCCccccCCCCCceeEEEEecCCCCceeEEEE
Q 008242 215 YRSKDFVHWIKAKHPLHS-----VKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDTKHEYYTVG 283 (573)
Q Consensus 215 y~S~Dl~~W~~~~~~~~~-----~~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~~~~~~~Y~vG 283 (573)
..|+|+.+|+.....+.. .......|+|.+|+.+ | +++|++|........|.+.
T Consensus 148 ~l~~d~~~~~~~~~~i~~~~~~~~~~~~~~EgP~i~k~~--G-------------~YYl~yS~~~~~~~~~a~s 206 (274)
T cd08990 148 KLKPDMLSLKGEPVEIVITDGAGDELRRFFEAPWVHKRN--G-------------TYYLSYSTGDPEEIAYATS 206 (274)
T ss_pred EeCccccccCCCcEEEEeccccCCCCCCcccceeEEEEC--C-------------EEEEEEECCCCcEEEEEEc
Confidence 457899999754433321 1224568999999997 6 8999998765444555554
No 17
>cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F. This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Ma
Probab=99.64 E-value=1.1e-14 Score=147.49 Aligned_cols=191 Identities=21% Similarity=0.216 Sum_probs=129.7
Q ss_pred CCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCC----CCCCccCCceEeeeEEEcCCCceEEEE
Q 008242 60 DPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIY----PSQQSDINGCWSGSATILPGEKPAIFY 135 (573)
Q Consensus 60 DPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~----P~~~~d~~gv~sGsav~~~dg~~~l~Y 135 (573)
|| .++.++|+||||+..... ....+..++|+||++|+..+.+|. +....+..++|.++++.. +|+++|+|
T Consensus 2 DP-~v~~~~~~yyl~~t~~~~----~~~~i~i~~S~Dl~~W~~~~~~~~~~~~~~~~~~~~~~waP~v~~~-~g~yyl~y 75 (271)
T cd08978 2 DP-YILRYNGKYYLYGSTDDA----AGPGVQVWSSKDLVNWRYEGAVFVAWRGRGEAKDSGGLWAPEVIYY-EGKYYLYY 75 (271)
T ss_pred CC-cEEEECCEEEEEEecCCc----CCCcEEEEECCccCCcEECCcccccccccCCcccCCceeCCeEEEE-CCEEEEEE
Confidence 89 578899999999987643 234689999999999999998875 344455688999999874 89999999
Q ss_pred cccCC-CCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecC--CeeEE
Q 008242 136 TGIDP-HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKIN--RKGLA 212 (573)
Q Consensus 136 Tg~~~-~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~--~~G~i 212 (573)
++... ...+.+++|+|+|. ..|.+....+. + . ......+||.|+ .+++|++||+++.... ..+.|
T Consensus 76 ~~~~~~~~~~~i~~a~s~d~-----~g~~~~~~~~~---~--~-~~~~~~iDp~vf-~d~dg~~yl~~~~~~~~~~~~~i 143 (271)
T cd08978 76 SVSDFDYNGSGIGVATSEDP-----TGPFEDKVIRP---P--T-SNNGNSIDPTVF-KDDDGKYYLYYGSGDPGAGFGGI 143 (271)
T ss_pred EcccCCCCcccEEEEECCCC-----CCCccccccCc---C--c-cCCCCccCcceE-EcCCCCEEEEEecccCCCCCCcE
Confidence 99753 23467888988775 45544321111 1 1 122457899965 4466999999987642 24568
Q ss_pred EEEEeCCCCCCEEccccc--ccCCCCCccccCceEEeccCCCCCccccCCCCCceeEEEEecCCCCceeEEEE
Q 008242 213 ILYRSKDFVHWIKAKHPL--HSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDTKHEYYTVG 283 (573)
Q Consensus 213 ~ly~S~Dl~~W~~~~~~~--~~~~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~~~~~~~Y~vG 283 (573)
.++++++...|......+ .......+.|+|.+|+.+ | +|+|++|........|.++
T Consensus 144 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~EgP~~~k~~--g-------------~yyl~ys~~~~~~~~y~~~ 201 (271)
T cd08978 144 YISELTDDLTKPTGPPVLSASSGNNNAVTEGPTIFKKN--G-------------YYYLTYSANGTGDYGYNIG 201 (271)
T ss_pred EEEEECcccccccCCceeeeeeccCCCceEccEEEEEC--C-------------EEEEEEEeCCCCCCCceEE
Confidence 888887654443211111 111234589999999987 5 8899888653312345444
No 18
>cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins. This subfamily is glycosyl hydrolase family 43 (GH43)-like and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.62 E-value=1.4e-14 Score=150.65 Aligned_cols=173 Identities=18% Similarity=0.247 Sum_probs=125.1
Q ss_pred CccceecCCCCC-ccCCcceEEECCEEEEEeeeCCC-----------C--CCCCCcEEEEEEeCCCCcceecCCCCCCC-
Q 008242 46 RTGYHFQPPKNW-INDPNGVMIYKGIYHLFYQYNPK-----------G--AVWGNIVWAHSTSKDLINWIPHDPAIYPS- 110 (573)
Q Consensus 46 RP~~H~~p~~gw-~nDPng~~~~~G~yHlfyq~~P~-----------~--~~~g~~~Wgha~S~Dlv~W~~~~~al~P~- 110 (573)
.|..-+.+..+. ..||..+++++|+|||||++... . ..|....++||+|+||+||++++++|.+.
T Consensus 24 ~p~~~~~~e~~i~r~dP~~Vi~~~g~Y~mwYs~~~~~~~~~~~~~~~~~~~~w~~y~I~~A~S~Dgv~W~~~g~~L~~~~ 103 (349)
T cd08992 24 YPKGGLGYEEGVHRRDPSSVIKVDGLYHVWYTKSEGETDGFGTGDPEAKVFPWDKCEIWHATSKDGWTWKEEGPAIGRGE 103 (349)
T ss_pred CcccccccccCeecCCCceEEEECCEEEEEEEecCCcccccccCCccccccCCCceEEEEEECCCCCCceECCccccCCC
Confidence 445555555554 45998799999999999996532 1 12457789999999999999999888654
Q ss_pred -CCccCCceEeeeEEEcCCCceEEEEcccCCC----CceeEEEEEEcCCCCCccceeEecCCCccccCCCC---------
Q 008242 111 -QQSDINGCWSGSATILPGEKPAIFYTGIDPH----NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAM--------- 176 (573)
Q Consensus 111 -~~~d~~gv~sGsav~~~dg~~~l~YTg~~~~----~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~--------- 176 (573)
..||..++|.++++. .+|+++|||++.... ..+.+++|+|.+.. ..|++. .+||+.+...
T Consensus 104 ~g~Wd~~~vwaP~Vi~-~dGkyYM~Ysa~~~~~~~~~~~~IGvA~AdSp~----GpWtr~-d~Pil~p~~dg~w~~d~~~ 177 (349)
T cd08992 104 KGAYDDRSVFTPEVLE-HEGTYYLVYQVVKSPYLNRSFESIAMAVADSPY----GPWTKS-DEPILSPSNDGIWKGDEDN 177 (349)
T ss_pred CCCccccceECcEEEE-ECCEEEEEEEecccccCCCCcceEEEEEECCcc----cccccC-CCcEecCCcCCceeeccCc
Confidence 358999999999876 599999999975421 23568999998753 359986 6899865311
Q ss_pred -------CCCCCCCccCCeeEEecCCCeEEEEEeeecC--------CeeEEEEEEeCCCC-CCEEc
Q 008242 177 -------NQINTSSFRDPTTAWLGPDKRWRVIIGSKIN--------RKGLAILYRSKDFV-HWIKA 226 (573)
Q Consensus 177 -------~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~--------~~G~i~ly~S~Dl~-~W~~~ 226 (573)
..++...+.||.|+. .+|+|||++.+... ..-+|.++.|++.. -|+..
T Consensus 178 ~~~~~~~g~wD~~~v~~P~v~~--~~g~yyL~Y~G~~~g~~~~~~~~~~~iGvAvAdsP~GPf~r~ 241 (349)
T cd08992 178 RFLVKKKGSFDSHKVHDPCLFP--FNGKFYLYYKGEQMGEEMTMGGRETKWGVAIADDPEGPYVKS 241 (349)
T ss_pred eeEeccCCCcccCceECCEEEE--ECCEEEEEEEccccCcccccCCCCceEEEEEECCCCCCCEeC
Confidence 114455678999654 47899999966431 12368899998875 47654
No 19
>cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.62 E-value=3e-14 Score=146.83 Aligned_cols=179 Identities=18% Similarity=0.191 Sum_probs=125.0
Q ss_pred CCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCCCCC-CccCCceEeeeEEEcCCCceEEEEccc
Q 008242 60 DPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQ-QSDINGCWSGSATILPGEKPAIFYTGI 138 (573)
Q Consensus 60 DPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~-~~d~~gv~sGsav~~~dg~~~l~YTg~ 138 (573)
|| .+++++|+|+||+..... ...+..++|+||+||+.++.++.+.. .|+..++|.++++. .+|+++|+|++.
T Consensus 2 DP-~v~~~~g~yyl~~t~~~~-----~~~i~~~~S~Dl~~W~~~~~~~~~~~~~~~~~~~waP~v~~-~~g~yyl~ys~~ 74 (294)
T cd08991 2 DP-FVLRYNGKYYAYGTGGAD-----GRGFAVYSSPDLVDWKLHGGALLALDDDWGRRGFWAPEVYY-YNGKFYMYYSAN 74 (294)
T ss_pred CC-eEEEECCEEEEEEeCCCC-----CCeeEEEECCCCCCceECCccccCCCCCccCCcEEccEEEE-ECCEEEEEEEec
Confidence 89 578889999999886543 23588999999999999998877654 37778999999887 489999999987
Q ss_pred CCC-CceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecCC---eeEEEE
Q 008242 139 DPH-NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINR---KGLAIL 214 (573)
Q Consensus 139 ~~~-~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~~---~G~i~l 214 (573)
... ..+.+++|+|+|.. ..|++... +.+... ....||.++ .+++|+|||+++..... .+....
T Consensus 75 ~~~~~~~~i~~a~s~~p~----gp~~~~~~-~~~~~~-------~~~iD~~vf-~d~dG~~yl~~~~~~~~~~~~~i~~~ 141 (294)
T cd08991 75 DRDEKTEHIGVAVSDSPL----GPFRDIKK-PPIDFE-------PKSIDAHPF-IDDDGKPYLYYSRNNYGNRVSDIYGT 141 (294)
T ss_pred cCCCCcceEEEEEeCCCC----CCCCcCCC-CcccCC-------CcccCCceE-ECCCCCEEEEEEecCCCCcccceEEE
Confidence 643 45778899997752 45776532 222211 246799965 44679999999865321 233334
Q ss_pred EEeCCCCCCEEccc----ccccC--------------CCCCccccCceEEeccCCCCCccccCCCCCceeEEEEecC
Q 008242 215 YRSKDFVHWIKAKH----PLHSV--------------KGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLD 273 (573)
Q Consensus 215 y~S~Dl~~W~~~~~----~~~~~--------------~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~ 273 (573)
--|.|+.+|..... +...+ ....+.|+|.+++.+ | +|+|++|..
T Consensus 142 ~l~~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~EgP~~~k~~--g-------------~yyl~ys~~ 203 (294)
T cd08991 142 ELVDDKLSIKTELVGPPIPVSAPGIDEIFERWRFGEGKDWRTNEGPTVLKHN--G-------------RYYLTYSAN 203 (294)
T ss_pred EEccceeeeccceeeccccccccccccccccccccccccCceeeCcEEEEEC--C-------------EEEEEEECC
Confidence 45788877752211 11110 123478999999997 5 889988864
No 20
>cd08984 GH43_5 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.57 E-value=1.8e-13 Score=141.32 Aligned_cols=169 Identities=19% Similarity=0.243 Sum_probs=119.0
Q ss_pred ccCCcceEEE--CCEEEEEeeeC-C---CC-CCCC-CcEEEEEEeCC-CCcceecCCCCCCCCCccCCceEeeeEEEcCC
Q 008242 58 INDPNGVMIY--KGIYHLFYQYN-P---KG-AVWG-NIVWAHSTSKD-LINWIPHDPAIYPSQQSDINGCWSGSATILPG 128 (573)
Q Consensus 58 ~nDPng~~~~--~G~yHlfyq~~-P---~~-~~~g-~~~Wgha~S~D-lv~W~~~~~al~P~~~~d~~gv~sGsav~~~d 128 (573)
.-|| .++++ +|+|||||... . .. ..|. ...+|+|+|+| |+||++++.++.++..++...+|.+.++.. +
T Consensus 11 ~~DP-~i~~~~~~~~~~~~yT~~~~~~~~~~~~w~~~~~i~~a~S~D~l~~W~~~g~~~~~~~~~~~~~~WAP~v~~~-~ 88 (294)
T cd08984 11 AADP-TIIYNRETKEWWMFYTNRRANVPTPGVAWVHGTDIGVASSKDGGATWTYRGTADGLEFECGRNTFWAPEVVWH-G 88 (294)
T ss_pred CCCC-EEEEeCCCCEEEEEEccccCcCCCCCcccCcCceEEEEEeCCCCCCCEEeeeeccCCCCCcccceeCceEEEE-C
Confidence 6899 57877 88999999521 1 11 1232 35799999999 999999987766644556677999999874 8
Q ss_pred CceEEEEcccCC-----CCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEe
Q 008242 129 EKPAIFYTGIDP-----HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIG 203 (573)
Q Consensus 129 g~~~l~YTg~~~-----~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g 203 (573)
|+++|||+.... ......++|+|+| +.+|++.. ++..+. ....||.|+ ...+|+|+|++.
T Consensus 89 G~y~myys~~~~~~~~~~~~~~i~~a~S~D-----l~~w~~~~--~~~~~~-------~~~iD~~vf-~~~dg~~yl~y~ 153 (294)
T cd08984 89 GVYHMYVTYIPGVPPDWGGPRRIVHYTSPN-----LWDWTFVG--RVDLDS-------DRVIDACVF-KLPDGRWRMWYK 153 (294)
T ss_pred CEEEEEEEecCCCCcccCCCcEEEEEECCC-----cCcceECC--ccccCC-------CCcEEeEEE-EeCCCEEEEEEE
Confidence 999999997532 1335678888877 37898753 442111 235799965 445799999996
Q ss_pred eecCCeeEEEEEEeCCCCCCEEcccccccCCCCCccccCceEEec
Q 008242 204 SKINRKGLAILYRSKDFVHWIKAKHPLHSVKGTGMWECPDFFPVS 248 (573)
Q Consensus 204 ~~~~~~G~i~ly~S~Dl~~W~~~~~~~~~~~~~~~wEcPdlf~l~ 248 (573)
.... ...+.+..|+|+.+|+..+..+ . ....|.|.+|+.+
T Consensus 154 ~~~~-~~~~~~a~s~D~~~w~~~~~~i-~---~~~~EgP~v~k~~ 193 (294)
T cd08984 154 DERR-GSTTYAADSEDLYHWTVEGPVL-G---DRPHEGPNVFRWK 193 (294)
T ss_pred CCCC-CeEEEEEECCCCCEEEeCCccc-c---CCCCCCCCeeEEC
Confidence 5322 2245788899999999765322 2 2235999999986
No 21
>cd08998 GH43_ABN_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=99.56 E-value=2.2e-13 Score=140.06 Aligned_cols=179 Identities=21% Similarity=0.235 Sum_probs=122.2
Q ss_pred ccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCCCCCC-------ccCCceEeeeEEEcCCCc
Q 008242 58 INDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQ-------SDINGCWSGSATILPGEK 130 (573)
Q Consensus 58 ~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~-------~d~~gv~sGsav~~~dg~ 130 (573)
+.|| .+++++|+||||+... ++++++|+||+||+..+.++.+... ....++|.+.++.. +|+
T Consensus 1 ~~DP-~v~~~~~~yyl~~t~~---------~i~i~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~~wAP~v~~~-~g~ 69 (288)
T cd08998 1 VHDP-SIIKEGDTYYLFSTGN---------GIAIAKSKDLGNWTYVGSVFPTGPPWWSSIDPGGSGNLWAPDVIYL-NGK 69 (288)
T ss_pred CCCC-eEEEECCEEEEEEcCC---------CeEEEECCCCCCcEECCccccCCCccccccccCCCCCccCCeEEEE-CCE
Confidence 3699 5788999999999864 6899999999999999988765432 34578999998774 999
Q ss_pred eEEEEcccCCC-CceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecCCe
Q 008242 131 PAIFYTGIDPH-NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRK 209 (573)
Q Consensus 131 ~~l~YTg~~~~-~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~~~ 209 (573)
++|||++.... ....+++|+|++.. ...|++. +||+... ++......+||.|+ .+++|++||++++...
T Consensus 70 yyl~ys~~~~~~~~~~i~va~s~~~~---~gpw~~~--~~v~~~~--~~~~~~~~iDp~vf-~d~dG~~Yl~~~~~~~-- 139 (288)
T cd08998 70 YYLYYSVSTFGSNRSAIGLATSDTLP---DGPWTDH--GIVIESG--PGRDDPNAIDPNVF-YDEDGKLWLSFGSFWG-- 139 (288)
T ss_pred EEEEEEEEeCCCCceEEEEEEeCCCC---CCCCEEc--ceeeecC--CCCCCcccccCCEE-EcCCCCEEEEeeeccC--
Confidence 99999987543 45667889987740 1479874 5888643 22123467899965 4468999999986421
Q ss_pred eEEEEEE-eCC---CCCCEEcccccccCC-CCCccccCceEEeccCCCCCccccCCCCCceeEEEEecC
Q 008242 210 GLAILYR-SKD---FVHWIKAKHPLHSVK-GTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLD 273 (573)
Q Consensus 210 G~i~ly~-S~D---l~~W~~~~~~~~~~~-~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~ 273 (573)
| |.+.+ ++| ...|......+.... .....|-|.+|+.+ | +++|++|..
T Consensus 140 ~-i~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~Egp~~~k~~--g-------------~YYl~~S~~ 192 (288)
T cd08998 140 G-IFLVELDPKTGKPLYPGGYGYNIAGRPRGHGAIEAPYIIYRG--G-------------YYYLFVSYG 192 (288)
T ss_pred C-EEEEEeCcccCCccCCCCcceEEeccCCCCCceeeeEEEEeC--C-------------EEEEEEEcc
Confidence 2 33333 233 123321111111111 23468999999997 5 888888854
No 22
>cd08985 GH43_6 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.45 E-value=7.4e-12 Score=127.32 Aligned_cols=190 Identities=16% Similarity=0.100 Sum_probs=130.4
Q ss_pred cCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCCCCC----CccCCceEeeeEEEc-CCCceEE
Q 008242 59 NDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQ----QSDINGCWSGSATIL-PGEKPAI 133 (573)
Q Consensus 59 nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~----~~d~~gv~sGsav~~-~dg~~~l 133 (573)
-|| ++++++|+|++|-.....+.. ....|-..+|+||+||+.++.+|.+.. .+...++|.++++.. .+|+++|
T Consensus 4 h~~-~i~~~~~~yY~ygs~~~~~~~-~~~gi~~~sS~DLvnW~~~g~vl~~~~~~~~~~~~~~~waP~v~y~~~~g~Y~m 81 (265)
T cd08985 4 HGG-GILKVGGTYYWYGENKGGGDT-AFGGVSCYSSTDLVNWTFEGLALTPEEDSADLGPGRIIERPKVIYNAKTGKYVM 81 (265)
T ss_pred ccC-ceEEECCEEEEEEEecCCCCc-ccccEEEEECCCCccceECceeccccccccccccCcEEECCeEEEeCCCCEEEE
Confidence 366 688899999999887543211 134688899999999999999987764 345578899999874 3699999
Q ss_pred EEcccCCC-CceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecCCeeEE
Q 008242 134 FYTGIDPH-NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLA 212 (573)
Q Consensus 134 ~YTg~~~~-~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~~~G~i 212 (573)
+|++...+ ....+++|+|++.. ..|+... .+. + .+ ...|||.|+ .+++|++||++++..+ ..+
T Consensus 82 ~~~~~~~~~~~~~igvA~Sd~p~----Gpf~~~~-~~~---~--~~---~~~~Dp~vf-~DdDG~~Yl~~~~~~~--~~i 145 (265)
T cd08985 82 WMHIDSSDYSDARVGVATSDTPT----GPYTYLG-SFR---P--LG---YQSRDFGLF-VDDDGTAYLLYSDRDN--SDL 145 (265)
T ss_pred EEEeCCCCCcceeEEEEEeCCCC----CCCEECC-ccC---C--CC---CCccCCceE-EcCCCCEEEEEecCCC--Cce
Confidence 99986532 34578899987653 3576542 221 1 11 347999965 4578999999987532 235
Q ss_pred EEEE-eCCCCCCEEcccccccCCCCCccccCceEEeccCCCCCccccCCCCCceeEEEEecCC---CCceeEEEEE
Q 008242 213 ILYR-SKDFVHWIKAKHPLHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDD---TKHEYYTVGT 284 (573)
Q Consensus 213 ~ly~-S~Dl~~W~~~~~~~~~~~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~~---~~~~~Y~vG~ 284 (573)
.+++ ++|+..+... +. ........|||.+|+.+ | +|+|+.|... .....|.+.+
T Consensus 146 ~i~~L~~d~~~~~~~--~~-~~~~~~~~EaP~i~K~~--g-------------~YYL~~S~~t~~~~~~~~y~~s~ 203 (265)
T cd08985 146 YIYRLTDDYLSVTGE--VT-TVFVGAGREAPAIFKRN--G-------------KYYLLTSGLTGWNPNDARYATAT 203 (265)
T ss_pred EEEEeCCCcccccce--EE-EccCCCccccceEEEEC--C-------------EEEEEEccCCCccCCceEEEEec
Confidence 5665 4677776532 11 11234578999999997 6 8999888642 2345677664
No 23
>cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=99.38 E-value=1.9e-11 Score=125.79 Aligned_cols=178 Identities=18% Similarity=0.166 Sum_probs=117.9
Q ss_pred CCccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCCCCCC--c----cCCceEeeeEEEcCCC
Q 008242 56 NWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQ--S----DINGCWSGSATILPGE 129 (573)
Q Consensus 56 gw~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~--~----d~~gv~sGsav~~~dg 129 (573)
+..-||. +++++|+|+||...... ...+..++|+||+||+.++.+|.+... + ...++|.+.++.. +|
T Consensus 6 ~~~~DP~-i~~~~~~yy~~~t~~~~-----~~~i~~~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~WAP~v~~~-~g 78 (288)
T cd09000 6 GFYPDPS-ICRVGDDYYLVTSSFEY-----FPGVPIFHSKDLVNWELIGHALTRPSQLDLDGLPDSGGIWAPTIRYH-DG 78 (288)
T ss_pred CCCCCCC-EEEECCEEEEEECCccc-----CCCceEEECCCcCCcEEcccccCCcccccccCCCCCCceEcceEEEE-CC
Confidence 4677995 78899999998532211 235889999999999999988754321 1 3467999999874 99
Q ss_pred ceEEEEcccCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecC--
Q 008242 130 KPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKIN-- 207 (573)
Q Consensus 130 ~~~l~YTg~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~-- 207 (573)
+++|||++........+++|.|.+.. ..|+. |++.. ....||.|++ +++|++||+.+....
T Consensus 79 ~yy~yy~~~~~~~~~~~~v~~s~~p~----gpw~~----~~~~~--------~~~iDp~vf~-d~dG~~Y~~~~~~~~~~ 141 (288)
T cd09000 79 TFYLITTNVDGMKDGGNFIVTADDPA----GPWSD----PVWLD--------SGGIDPSLFF-DDDGKVYLVGNGWDERR 141 (288)
T ss_pred EEEEEEEecCCCCCCceEEEEeCCCC----CCCcC----CEecC--------CCccCCceeE-cCCCCEEEEecccCCcc
Confidence 99999998764333457788876652 34652 33211 1468999654 468999998876421
Q ss_pred ---CeeEEEEEEeCCCCCCEEcccc--cccCCCCCccccCceEEeccCCCCCccccCCCCCceeEEEEecC
Q 008242 208 ---RKGLAILYRSKDFVHWIKAKHP--LHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLD 273 (573)
Q Consensus 208 ---~~G~i~ly~S~Dl~~W~~~~~~--~~~~~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~ 273 (573)
..+.|.+.+. |...|+..+.+ +.........|+|.+|+.+ | +++|++|..
T Consensus 142 ~~~~~~~i~~~~l-~~~~~~~~~~~~~~~~~~~~~~~Egp~v~k~~--g-------------~YYl~ys~~ 196 (288)
T cd09000 142 GYNGHGGIWLQEI-DLETGKLLGEPKVIWNGTGGRWPEGPHLYKRD--G-------------WYYLLIAEG 196 (288)
T ss_pred ccCCCCcEEEEEE-ccccCCCCCCcEEEEeCCCCCCcccCeEEEEC--C-------------EEEEEEecC
Confidence 1234556554 23345544432 2222223578999999987 5 888888754
No 24
>PF08244 Glyco_hydro_32C: Glycosyl hydrolases family 32 C terminal; InterPro: IPR013189 This domain corresponds to the C-terminal domain of glycosyl hydrolase family 32. It forms a beta sandwich module [].; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 1W2T_C 1UYP_A 3UGG_A 3UGH_B 3UGF_B ....
Probab=99.38 E-value=1.4e-12 Score=109.48 Aligned_cols=75 Identities=32% Similarity=0.434 Sum_probs=56.3
Q ss_pred cceEEEEEEeCCCCeEEEEEEEeeeCCCCceEEEEeecCCCCCCCCCCCCcccceEE-E--eccCCCeEEEEEEEeCCeE
Q 008242 444 GPFGLLALASKDLKEYTAVFFRIFKGEDNKFVVLMCSDQSRSSLNSDNDKTTYGAFL-N--VDPVYEKLSLRSLIDHSIV 520 (573)
Q Consensus 444 ~~~gl~l~~s~d~~e~t~i~yd~~~~~~~~~~~~~~~Dr~~s~~~~~~~~~~~~~~~-~--~~~~~~~l~LrIfvD~S~v 520 (573)
+.+||.|+++++.+++|.|.||..+. . +++||++|+.. ...+.++... . +...++.++||||||+|+|
T Consensus 9 ~~~g~~l~~s~~~~e~~~i~~d~~~~---~----l~vDR~~s~~~--~~~~~~~~~~~~~~~~~~~~~l~L~i~vD~Ssv 79 (86)
T PF08244_consen 9 DSFGLRLRASNDGGEETSIGYDPANG---T----LTVDRTNSGIN--DFSEEFGTFVRSAPLDLGDKILKLRIFVDRSSV 79 (86)
T ss_dssp CEEEEEEEEETTSSSEEEEEEETTTT---E----EEEEETTSSTT--SCCCEEEEEEEEEETTTTESEEEEEEEEETTEE
T ss_pred CCeEEEEEECCCccEEEEEEEECCCC---E----EEEeCCCCccc--ccccccCcceEEeeccCCCCcEEEEEEEeCCEE
Confidence 47999999999999999999997542 2 77899999832 2334444422 2 1222466899999999999
Q ss_pred EEEccCC
Q 008242 521 ESFGVGG 527 (573)
Q Consensus 521 EVFvn~G 527 (573)
|||+|||
T Consensus 80 EiFvNdG 86 (86)
T PF08244_consen 80 EIFVNDG 86 (86)
T ss_dssp EEEETTT
T ss_pred EEEECCC
Confidence 9999987
No 25
>PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety. On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B.
Probab=99.37 E-value=3.1e-12 Score=132.76 Aligned_cols=165 Identities=19% Similarity=0.302 Sum_probs=113.0
Q ss_pred cCCcceEEECCE--EEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecC-CCCCCCCCccCCceEeeeEEEcCCCceEEEE
Q 008242 59 NDPNGVMIYKGI--YHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHD-PAIYPSQQSDINGCWSGSATILPGEKPAIFY 135 (573)
Q Consensus 59 nDPng~~~~~G~--yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~-~al~P~~~~d~~gv~sGsav~~~dg~~~l~Y 135 (573)
-+| |++.++|. |||.|...-. ..+..+.|.|.|+|++||+..+ ++|.|+..++..||....++.. +|+++|+|
T Consensus 33 fNp-gai~~~~~~R~~l~yr~~~~--~~~~~~iglA~S~DGi~f~~~~~pil~P~~~~e~~GvEDPRVt~i-~d~yymtY 108 (312)
T PF04041_consen 33 FNP-GAIVFDGGLRVYLLYRAYGS--DIGSSRIGLARSDDGIHFERDPEPILYPDTDYEEWGVEDPRVTKI-DDTYYMTY 108 (312)
T ss_dssp EEE-EEEEETTE--EEEEEEEEES--SSSEEEEEEEEESSSSS-EE-SS-SBEE-SSTTHTEEEEEEEEEE-TTEEEEEE
T ss_pred EcC-cEEEECCeeEEEEEEEeECC--CCceeEEEEEEccCCcCceECCCCEEccCCCCcccCccceeEEEE-CCEEEEEE
Confidence 357 66756665 8998876432 2223489999999999999985 7899999999999999999875 89999999
Q ss_pred cccCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCC-CCCCCCCccCCeeEEecCCCeEEEEEeeecCCeeEEEE
Q 008242 136 TGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAM-NQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLAIL 214 (573)
Q Consensus 136 Tg~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~-~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~~~G~i~l 214 (573)
|+.+.. ...+++|+|+|. .+|+|.. +++.+... .......-+|-..+-...+|+|+|+.. .+.|.+
T Consensus 109 ta~~~~-~~~~~la~s~D~-----~~~~r~g--~~~~~~~~~~~~~~~~~kd~~lfp~ki~Gky~m~~r-----~~~i~l 175 (312)
T PF04041_consen 109 TAYSGK-GPRIGLATSKDF-----KHWERHG--KIFPPFNGNEDYRDFWSKDGALFPEKINGKYAMLHR-----DPSIWL 175 (312)
T ss_dssp EEEESS-SEEEEEEEESSS-----SSEEEEE--CTTTTTCTS-EEEEEEEECCEEEESEETTEEEEEEE-----SSSBEE
T ss_pred EEecCC-CcccceEEccch-----HhhEEec--cccCcccccccccccccCceEEEEEEECCEEEEEEC-----CCCEEE
Confidence 998753 467899999884 8999974 34322200 001111225554332225899999998 346889
Q ss_pred EEeCCCCCCEEcccccccCCCCCcccc
Q 008242 215 YRSKDFVHWIKAKHPLHSVKGTGMWEC 241 (573)
Q Consensus 215 y~S~Dl~~W~~~~~~~~~~~~~~~wEc 241 (573)
.+|+||++|+....++... ..+.||+
T Consensus 176 a~S~Dl~~W~~~~~~~~~~-~~~~~d~ 201 (312)
T PF04041_consen 176 AYSPDLIHWGNHREPLLSP-RPGWWDS 201 (312)
T ss_dssp EEESSSSSEEEEBETSB---STTSSCS
T ss_pred EecCCcccccccccccccC-CCCcChh
Confidence 9999999999876544332 3446776
No 26
>cd08983 GH43_4 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.36 E-value=8.3e-11 Score=120.35 Aligned_cols=183 Identities=15% Similarity=0.105 Sum_probs=121.5
Q ss_pred CCccCCcceEEE--CCEEEEEeeeCCCCCCC-CCcEEEEEEeCCCCcceecCCCCCCCCCccCCceEeeeEEEcC-CCce
Q 008242 56 NWINDPNGVMIY--KGIYHLFYQYNPKGAVW-GNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGCWSGSATILP-GEKP 131 (573)
Q Consensus 56 gw~nDPng~~~~--~G~yHlfyq~~P~~~~~-g~~~Wgha~S~Dlv~W~~~~~al~P~~~~d~~gv~sGsav~~~-dg~~ 131 (573)
+-+.||. +++. +|+|||++...-....+ +...+.+++|+||+||+..+.++.... ...++|.+.++.++ +|++
T Consensus 16 ~~~rDP~-I~r~~~~g~yy~~~T~~~~~~~~~~~~~i~i~~S~DLv~W~~~~~~~~~~~--~~~~~WAPev~~d~~~g~y 92 (276)
T cd08983 16 KGLRDPF-ILRSHEGGKYYMIATDLKITGQTNGSQYIVVWESTDLVNWTFQRLVKVNPP--NAGNTWAPEAFWDAERGQY 92 (276)
T ss_pred CCccCCe-EEEcCCCCEEEEEEEecCcCCcccCCCeEEEEECCcccCCcccceeecCCC--CcCcEeCccceEcCCCCeE
Confidence 4567995 6665 89999999865322111 356799999999999999887642211 23578999998764 6999
Q ss_pred EEEEcccCCC---CceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecCC
Q 008242 132 AIFYTGIDPH---NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINR 208 (573)
Q Consensus 132 ~l~YTg~~~~---~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~~ 208 (573)
+|+|+..... ....+.+.++.. .| +.+|+. ..|++.+. ....|+.++ + .+|+|||++.....
T Consensus 93 ~~~~s~~~~~~~~~~~~~~i~~~tt-~D--f~tft~--p~~~~~~~-------~~~ID~~v~-~-~~g~~Yl~~k~~~~- 157 (276)
T cd08983 93 VVYWSSRLYDNTGGFYNYRLYATTT-SD--FVTFTE--PKVWIDLG-------ANVIDTTVV-K-VGGTYYRFYKNEGS- 157 (276)
T ss_pred EEEEecccCCCCCCCccEEEEEEec-Cc--ccccCC--CeEeecCC-------CCeEeeEEE-E-eCCEEEEEEecCCC-
Confidence 9999987542 122233333321 11 378875 34666422 346899965 4 35899999876432
Q ss_pred eeEEEEEEeCCCC-CCEEcccccccCCCCCccccCceEEeccCCCCCccccCCCCCceeEEEEec
Q 008242 209 KGLAILYRSKDFV-HWIKAKHPLHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSL 272 (573)
Q Consensus 209 ~G~i~ly~S~Dl~-~W~~~~~~~~~~~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~ 272 (573)
..|.+.+|++|. .|+...... .......|-|.+|+.+.. .+|+|+++.
T Consensus 158 -~~i~~~~s~~l~g~~~~~~~~~--~~~~~~~EgP~v~k~~~~-------------~~y~L~~d~ 206 (276)
T cd08983 158 -KDIELARSKSLTGPWTIVGTGD--AGWGGAVEGPTVFKLNNG-------------GGWYLYGDN 206 (276)
T ss_pred -CcEEEEEeCCCCCCceEecccc--cCCCCceeCCeEEEECCC-------------CEEEEEEEE
Confidence 457888999986 687654321 122357899999999732 288887764
No 27
>cd09003 GH43_AXH_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), xylanase (endo-alpha-L-arabinanase) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose
Probab=99.36 E-value=3.6e-11 Score=125.07 Aligned_cols=187 Identities=13% Similarity=0.252 Sum_probs=124.2
Q ss_pred CCccCCcceEEECCEEEEEeeeCCCCC---------CCCCcEEEEEEeCCCCcceecCCCCCCC--CCccCCceEeeeEE
Q 008242 56 NWINDPNGVMIYKGIYHLFYQYNPKGA---------VWGNIVWAHSTSKDLINWIPHDPAIYPS--QQSDINGCWSGSAT 124 (573)
Q Consensus 56 gw~nDPng~~~~~G~yHlfyq~~P~~~---------~~g~~~Wgha~S~Dlv~W~~~~~al~P~--~~~d~~gv~sGsav 124 (573)
.+.-||. ++.++|+|+||........ .+....+-..+|+||++|+.++.++.|. ..|. .++|.+.++
T Consensus 7 ~~~aDP~-~~~~~g~yY~~~t~~~~~~~~~~~~~~~~~~~~~i~v~~S~DL~~W~~~g~v~~~~~~~~w~-~~~WAP~v~ 84 (311)
T cd09003 7 RYGADPT-AVVYNGRVYVYTTNDDYEYDSNTIKDNNYYNINDITVISSDDMVNWTDHGEIFVPNGIAKWA-GNSWAPSIA 84 (311)
T ss_pred CccCCCC-eEEECCEEEEEeCCCCccccccccccCCccccCcEEEEECCCCCCcEEcccccCcCCCCCcc-cccCCCceE
Confidence 4668995 5778999999998654321 1224568889999999999999888742 3454 478999988
Q ss_pred EcCC----CceEEEEcccCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCC-CCccCCeeEEecCCCeEE
Q 008242 125 ILPG----EKPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINT-SSFRDPTTAWLGPDKRWR 199 (573)
Q Consensus 125 ~~~d----g~~~l~YTg~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~-~~~RDP~V~~~~~~g~~~ 199 (573)
. .+ |+++|||+.. ...+++|+|.+.. -.|+....+|++.... ++... ....||.++ .+++|++|
T Consensus 85 ~-~~~~~~gkyylyy~~~----~~~igva~SdsP~----GP~~~~~g~~l~~~~~-~~~~~~~~~iDp~~f-~DdDG~~Y 153 (311)
T cd09003 85 V-KKINGKGKFYLYFANG----GGGIGVLTADSPV----GPWTDPLGKPLITGST-PGCAGVVWLFDPAVF-VDDDGQGY 153 (311)
T ss_pred E-eccCCCCEEEEEEecC----CCeEEEEEcCCCC----CCcccCCCCeeecCCC-CCccCCccccCCCeE-ECCCCCEE
Confidence 6 46 9999999853 2357899987653 4688754567774310 12111 123799965 44789999
Q ss_pred EEEeeecC-----CeeEEEEEE-eCCCCCCEEcccccccCCCCCccccCceEEeccCCCCCccccCCCCCceeEEEEecC
Q 008242 200 VIIGSKIN-----RKGLAILYR-SKDFVHWIKAKHPLHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLD 273 (573)
Q Consensus 200 m~~g~~~~-----~~G~i~ly~-S~Dl~~W~~~~~~~~~~~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~ 273 (573)
|++++... ..+.+.+.+ ++|+..- .+++.. ......+|.|.+++.+ | +++|++|..
T Consensus 154 l~~g~~~~~~~~~~~~~i~i~~l~~D~~~~--~g~~~~-i~~~~~~Egp~~~K~~--G-------------~YYL~ys~~ 215 (311)
T cd09003 154 LYFGGGVPGGRWANPNTARVIKLGDDMISV--DGSAVT-IDAPYFFEASGLHKIN--G-------------TYYYSYCTN 215 (311)
T ss_pred EEECCccCCCccccCCCEEEEEeCCCceec--cCCceE-ccCCCceEeeeEEEEC--C-------------EEEEEEeCC
Confidence 99986321 123455665 4576432 232211 1123579999999987 6 888888854
No 28
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=99.33 E-value=6.8e-11 Score=120.97 Aligned_cols=183 Identities=21% Similarity=0.247 Sum_probs=126.4
Q ss_pred CCccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCCCCCCcc--CCce-EeeeEEEcCCCceE
Q 008242 56 NWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQSD--INGC-WSGSATILPGEKPA 132 (573)
Q Consensus 56 gw~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~d--~~gv-~sGsav~~~dg~~~ 132 (573)
+..-|| .++.++|+|+||+...+.. ..+..++|+||+||+..+.+|.+....+ ..+. |.+.++. .+|+++
T Consensus 8 ~~~~DP-~i~~~~~~yY~~~t~~~~~-----~~i~v~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~WAP~i~~-~~g~yy 80 (286)
T PF04616_consen 8 GDYADP-SIVRFGDGYYLYGTTDPEG-----PGIPVWSSKDLVNWTDAGNVLPPPPDWDWANNGNIWAPEIHY-INGKYY 80 (286)
T ss_dssp SSECSE-EEEEETTEEEEEEEEBTCE-----SBEEEEEESSSSSEEEEEECESSTTTTSTTTSETTEEEEEEE-ETTEEE
T ss_pred CCCCCC-EEEEECCEEEEEEEcCCCC-----CeEEEEECCCCcccccceeeecccccccccccccccCCeEEE-cCCeEE
Confidence 566799 5788999999999876543 4588999999999999997776654333 2333 9999876 599999
Q ss_pred EEEcccCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecC--Cee
Q 008242 133 IFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKIN--RKG 210 (573)
Q Consensus 133 l~YTg~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~--~~G 210 (573)
|||+.........+++|+|.+.. ..|+... .+.... ....||.|+.. ++|++||+++.... ..+
T Consensus 81 ~y~~~~~~~~~~~~~va~a~~~~----Gp~~~~~--~~~~~~-------~~~iD~~vf~d-~dG~~Yl~~~~~~~~~~~~ 146 (286)
T PF04616_consen 81 MYYSDSGGDAGSGIGVATADSPD----GPWTDPG--KIPIPG-------GNSIDPSVFVD-DDGKYYLYYGSWDNGDPGG 146 (286)
T ss_dssp EEEEEESTSTTEEEEEEEESSTT----S-EEEEE--EEEEES-------SSSSSEEEEEE-TTSEEEEEEEESTTTSSEE
T ss_pred EEEEccCCCCCcceeEEEeCCcc----ccccccc--ceeecc-------ccccCceEEEe-cCCCcEEeCcccCCCccce
Confidence 99993222345568899987753 4788652 222111 33579996544 67999999998653 234
Q ss_pred EEEEEE-eCCCCCCEEcc-cccccC---CCCCccccCceEEeccCCCCCccccCCCCCceeEEEEecCC
Q 008242 211 LAILYR-SKDFVHWIKAK-HPLHSV---KGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDD 274 (573)
Q Consensus 211 ~i~ly~-S~Dl~~W~~~~-~~~~~~---~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~~ 274 (573)
.|.+.+ ++|...+.... ..+... ......|+|.+|+.+ | +++|++|...
T Consensus 147 ~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~--g-------------~yYl~~s~~~ 200 (286)
T PF04616_consen 147 GIYIAELDPDGTSLTGEPVVVIFPGDEGWDGGVVEGPFVFKHG--G-------------KYYLFYSAGG 200 (286)
T ss_dssp EEEEEEEETTTSSEEEEECEEEEEESGSSTTTBEEEEEEEEET--T-------------EEEEEEEESG
T ss_pred eEEeecccCccccccCcccccccccccccCCccccceEEEEcC--C-------------CEEEEEeccC
Confidence 566666 46666665543 122222 235678999999997 5 8889888643
No 29
>cd08981 GH43_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.27 E-value=3e-10 Score=117.15 Aligned_cols=136 Identities=19% Similarity=0.227 Sum_probs=94.2
Q ss_pred CCCccCCcceEEE--CCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCCCCC-CccCCceEeeeEEEcCCCce
Q 008242 55 KNWINDPNGVMIY--KGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQ-QSDINGCWSGSATILPGEKP 131 (573)
Q Consensus 55 ~gw~nDPng~~~~--~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~-~~d~~gv~sGsav~~~dg~~ 131 (573)
..++-||. ++++ +|+||||..............+.+.+|+||+||+..+.++.+.. .+...++|.+.++. .+|++
T Consensus 3 ~~~~~DP~-v~~~~~~g~yYl~~T~~~~~~~~~~~gi~v~~S~DLv~W~~~g~~~~~~~~~~~~~~~WAP~v~~-~~G~y 80 (291)
T cd08981 3 DIRIRDPF-ILADPETGTYYLYGTTDPNIWGGEGTGFDVYKSKDLKDWEGPYPVFRPPDDFWADDNFWAPEVHE-YKGRY 80 (291)
T ss_pred cccccCCE-EEEECCCCEEEEEEecCccccccCCCcEEEEECCChhcccccceeeccCCCcCccccccCCeeee-eCCEE
Confidence 34578995 6777 99999999765332111134589999999999999998886543 34456799999876 59999
Q ss_pred EEEEcccCCC-CceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEee
Q 008242 132 AIFYTGIDPH-NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGS 204 (573)
Q Consensus 132 ~l~YTg~~~~-~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~ 204 (573)
+|||+..... ....+++|+|.+.. -.|+.....|+.... ....||.+ |.+++|++||+++.
T Consensus 81 yly~s~~~~~~~~~~~~va~s~~p~----GP~~~~~~~~~~~~~-------~~~iDp~~-f~DdDG~~Yl~~~~ 142 (291)
T cd08981 81 YMFATFHNPGGERRGTAILVSDSPE----GPFVPHSDGPVTPED-------WMCLDGTL-YVDEDGKPWMVFCH 142 (291)
T ss_pred EEEEEeccCCCceeeEEEEECCCCC----CCCEeCCCCccCCCC-------CceEcCce-EEcCCCCEEEEEEe
Confidence 9999876432 22346788876643 457765333443211 23579985 45578999999864
No 30
>cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J. This glycosyl hydrolase family clan J (according to carbohydrate-active enzymes database (CAZY)) includes family 32 (GH32) and 68 (GH68). The overall sequence homology between the two families is low (<15% identity), but common sequence motifs have been identified. GH32 enzymes are invertases that also include other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named inverta
Probab=99.27 E-value=7.7e-11 Score=119.61 Aligned_cols=137 Identities=21% Similarity=0.303 Sum_probs=97.7
Q ss_pred CCccCCcceEEEC-CEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCC-------CCCCccCCceEeeeEEEcC
Q 008242 56 NWINDPNGVMIYK-GIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIY-------PSQQSDINGCWSGSATILP 127 (573)
Q Consensus 56 gw~nDPng~~~~~-G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~-------P~~~~d~~gv~sGsav~~~ 127 (573)
+.+.||. +++.+ |+|||||+..... ......+++|+|+|+++|+..+..+. +...++...+.++.++.++
T Consensus 64 ~~~~~p~-v~~~~dg~~~~~Yt~~~~~-~~~~~~i~~A~S~D~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~dP~v~~~~ 141 (276)
T cd08979 64 GGVWTPS-VVRDPDGTYRMFYTGYDRP-KGAVQRIGLATSKDLIHWTKHGPNPVPRWYESGNPGPWDDHAWRDPAVVRDE 141 (276)
T ss_pred CCeEcce-EEEcCCCeEEEEEecccCC-CCCcceEEEEECCCCCceEECCCCcceeeeecCCCCCcccccccccEEEEEC
Confidence 3467895 66677 9999999976532 23457899999999999999876542 2233445667889988764
Q ss_pred C-CceEEEEcccCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeee
Q 008242 128 G-EKPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSK 205 (573)
Q Consensus 128 d-g~~~l~YTg~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~ 205 (573)
+ |+++|+|++........+.+|.|.|. .+|++....+... .+.....+++|.++ + .+|+|+|++++.
T Consensus 142 ~~g~y~m~~~~~~~~~~~~i~~a~S~D~-----~~W~~~~~~~~~~----~~~~~~~~e~P~~~-~-~~g~~~l~~~~~ 209 (276)
T cd08979 142 EGGGWRMYYGARDADERGAIGLATSPDL-----IHWTPVPPPPGPR----TGYDDGQLEVPQVV-K-IDGRWYLLYSGR 209 (276)
T ss_pred CCCEEEEEEEeEccCCCcEEEEEECCCC-----CcceECCCCCCCC----CcccCCcCccceEE-E-ECCEEEEEEEec
Confidence 3 89999999876445567889998874 8999864322121 22234568999964 4 468999999875
No 31
>cd08988 GH43_ABN Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla
Probab=99.25 E-value=4.1e-10 Score=115.43 Aligned_cols=180 Identities=19% Similarity=0.204 Sum_probs=115.4
Q ss_pred cCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCCCCCCc-------cCCceEeeeEEEcCCCce
Q 008242 59 NDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQS-------DINGCWSGSATILPGEKP 131 (573)
Q Consensus 59 nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~-------d~~gv~sGsav~~~dg~~ 131 (573)
.|| .++.++|+|+||.... .+..++|+||+||+..+.+|.+...| ...++|.+.++. .+|++
T Consensus 1 ~DP-~vi~~~~~YY~~~T~~---------g~~v~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~~~~~WAP~v~~-~~G~y 69 (279)
T cd08988 1 HDP-VIIKEGDTWYVFGTGP---------GITILSSKDLVNWTYSGSAFATEPTWKKRVPPSFDGHLWAPDIYQ-HNGKF 69 (279)
T ss_pred CCC-EEEEECCEEEEEEecC---------CEEEEECCCcCCccccCccccCCCccccccCCCCCCCEecceEEE-ECCEE
Confidence 389 5777899999997641 37789999999999999888644332 236799999876 48999
Q ss_pred EEEEcccCCC-CceeEEEEEEcCCCCCcc-ceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecCCe
Q 008242 132 AIFYTGIDPH-NRQVQNLAVPKNLSDPYL-REWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRK 209 (573)
Q Consensus 132 ~l~YTg~~~~-~~~~q~lA~s~d~~~~~l-~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~~~ 209 (573)
+|||++.... ....+++|+|++...+.- ..|++ ..|++... .. ......||.+++. ++|++||+.++.. .
T Consensus 70 ylyys~~~~~~~~~~igva~s~~p~Gp~~~~~w~~--~~~i~~~~--~~-~~~~~iDp~~f~D-dDG~~Yl~~g~~~--~ 141 (279)
T cd08988 70 YLYYSVSAFGSNTSAIGLAVNKTIDGPSPDYGWEK--GGVVISSD--AS-DNYNAIDPAIIFD-QHGQPWLSFGSFW--G 141 (279)
T ss_pred EEEEEeccCCCCCceEEEEEcCCCCCCCcCcCccc--cCceEecC--CC-CCCCccCCceEEc-CCCCEEEEecccC--C
Confidence 9999976532 345778999877543310 11432 24666432 11 1234579996554 7899999998632 1
Q ss_pred eEEEEEE-eCCCCCCEEcccc--cccC-CCCCccccCceEEeccCCCCCccccCCCCCceeEEEEecC
Q 008242 210 GLAILYR-SKDFVHWIKAKHP--LHSV-KGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLD 273 (573)
Q Consensus 210 G~i~ly~-S~Dl~~W~~~~~~--~~~~-~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~ 273 (573)
| |.+.+ ++|+..-...+.. +... ......|-|-+++.+ | +++|+.|..
T Consensus 142 g-i~~~eL~~d~~~~~~~~~~~~i~~~~~~~~~~Egp~i~k~~--g-------------~YYl~~S~g 193 (279)
T cd08988 142 G-IKLFELDKDTMKPAEPGELHSIAGRERSSAAIEAPFILYRG--D-------------YYYLFVSFG 193 (279)
T ss_pred C-EEEEEECcccCCccCCCcceEEeccCCCCCceEeeEEEEcC--C-------------eEEEEEEcC
Confidence 2 44444 4554432111111 1111 123467999999986 5 888888754
No 32
>cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins. This subfamily is glycosyl hydrolase family 43 (GH43)-like and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.23 E-value=4.4e-10 Score=117.26 Aligned_cols=170 Identities=18% Similarity=0.213 Sum_probs=113.5
Q ss_pred ccCCcceEEECCEEEEEeeeCCCC-CCCCCcEEEEEEeCCCC-cceecC-CCCCCCC------------------CccCC
Q 008242 58 INDPNGVMIYKGIYHLFYQYNPKG-AVWGNIVWAHSTSKDLI-NWIPHD-PAIYPSQ------------------QSDIN 116 (573)
Q Consensus 58 ~nDPng~~~~~G~yHlfyq~~P~~-~~~g~~~Wgha~S~Dlv-~W~~~~-~al~P~~------------------~~d~~ 116 (573)
+..| .+++++|+|||||+..-.. ..-...+.|+|+|+|.. .|++.+ ++|.|.. .||..
T Consensus 112 vwaP-~Vi~~dGkyYM~Ysa~~~~~~~~~~~~IGvA~AdSp~GpWtr~d~Pil~p~~dg~w~~d~~~~~~~~~~g~wD~~ 190 (349)
T cd08992 112 VFTP-EVLEHEGTYYLVYQVVKSPYLNRSFESIAMAVADSPYGPWTKSDEPILSPSNDGIWKGDEDNRFLVKKKGSFDSH 190 (349)
T ss_pred eECc-EEEEECCEEEEEEEecccccCCCCcceEEEEEECCcccccccCCCcEecCCcCCceeeccCceeEeccCCCcccC
Confidence 3457 4778999999999853211 11123578888888876 799874 4566642 36777
Q ss_pred ceEeeeEEEcCCCceEEEEcccCC-------CCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCee
Q 008242 117 GCWSGSATILPGEKPAIFYTGIDP-------HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTT 189 (573)
Q Consensus 117 gv~sGsav~~~dg~~~l~YTg~~~-------~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V 189 (573)
++...+++. .+|+++|||+|+.. ...+.+++|+|.+.. -.|+|.+.|||+... + ..+
T Consensus 191 ~v~~P~v~~-~~g~yyL~Y~G~~~g~~~~~~~~~~~iGvAvAdsP~----GPf~r~~~nPi~~~~--------~--~~~- 254 (349)
T cd08992 191 KVHDPCLFP-FNGKFYLYYKGEQMGEEMTMGGRETKWGVAIADDPE----GPYVKSPYNPITNSG--------H--ETC- 254 (349)
T ss_pred ceECCEEEE-ECCEEEEEEEccccCcccccCCCCceEEEEEECCCC----CCCEeCCCCcccCCC--------C--ceE-
Confidence 887777765 59999999999752 234678999998874 468998889998533 1 236
Q ss_pred EEecCCCeE-EEEEeeecCCeeEEEEEEeCCCCCCEEcccccccCCCCCccccCceEEec
Q 008242 190 AWLGPDKRW-RVIIGSKINRKGLAILYRSKDFVHWIKAKHPLHSVKGTGMWECPDFFPVS 248 (573)
Q Consensus 190 ~~~~~~g~~-~m~~g~~~~~~G~i~ly~S~Dl~~W~~~~~~~~~~~~~~~wEcPdlf~l~ 248 (573)
+|.. .+.+ .|+..- ..+.|. +..|+|+++|+-...+-..+...+...|||-++-+
T Consensus 255 ~~~~-~~~~~~~~~~d-~~~~~~--~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (349)
T cd08992 255 VWQY-KGGIAAMLTTD-GPEKNT--IQFAPDGINFEIMAHIKGAPEAIGPYRRPDADEDP 310 (349)
T ss_pred EEec-CCceEEEEecc-CCCCce--EEeCCCCccEEEeeeccCCCccccCccCcccccCC
Confidence 6884 4556 555443 333454 67899999999765322223334556677766544
No 33
>cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended
Probab=99.11 E-value=3.8e-09 Score=107.69 Aligned_cols=174 Identities=17% Similarity=0.154 Sum_probs=112.4
Q ss_pred CCccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCCCCCCc------cCCceEeeeEEEcCCC
Q 008242 56 NWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQS------DINGCWSGSATILPGE 129 (573)
Q Consensus 56 gw~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~------d~~gv~sGsav~~~dg 129 (573)
+..-|| .+++++|+|+|++..... ...+...+|+||+||+..+.++.....+ ...++|.+.++. .+|
T Consensus 6 ~~~~DP-~ii~~~~~yY~~~t~~~~-----~~g~~~~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~~~~WAP~v~~-~~G 78 (269)
T cd08989 6 GDNPDP-SIIRAGDDYYMASSTFEW-----FPGVQIHHSTDLVNWHLIGHPLDRLEDLDMKGNPYSGGIWAPCLSY-YDG 78 (269)
T ss_pred CCCCCC-cEEEECCeEEEEECcccc-----CCCcEEEECCccCCCEEccccccCccccccccCCCCCcEEcceEEE-ECC
Confidence 556799 578899999999864221 1236678999999999998876542211 235799999876 599
Q ss_pred ceEEEEcccCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecCCe
Q 008242 130 KPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRK 209 (573)
Q Consensus 130 ~~~l~YTg~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~~~ 209 (573)
+++|+|+.........+++|++.+.. -.|+. |+... ....||.++ .+++|+.||+.+..
T Consensus 79 ~yy~yy~~~~~~~~~~i~va~sd~~~----Gpw~~----~~~~~--------~~~IDp~~f-~D~dG~~Yl~~~~~---- 137 (269)
T cd08989 79 KFWLIYTAVKVWKDCHNYLFTAEDIT----GPWSR----PIFLN--------YGGFDPSLF-HDDDGKKYLINMGW---- 137 (269)
T ss_pred EEEEEEeccccCCCceEEEEEECCCC----CCCcC----CEECC--------CCcccCceE-EcCCCCEEEEecCC----
Confidence 99999998643344567889886643 24652 33321 135799965 44789999998752
Q ss_pred eEEEEEE-eCCCCCCEEcccc----cccCCCCCccccCceEEeccCCCCCccccCCCCCceeEEEEecCC
Q 008242 210 GLAILYR-SKDFVHWIKAKHP----LHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDD 274 (573)
Q Consensus 210 G~i~ly~-S~Dl~~W~~~~~~----~~~~~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~~ 274 (573)
+.|.+.+ +.|+.. ..+.+ ..........|-|-+++.+ | +++|++|...
T Consensus 138 ~~i~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~Egp~~~k~~--G-------------~YYl~~S~~~ 190 (269)
T cd08989 138 SGIRLQEYSPAEKK--LIGKPLNKVIIKGTDDGLTEGPHLYKIN--G-------------KYYLTTAEGG 190 (269)
T ss_pred CcEEEEEEChhhCC--CCCCceeEEEecCCCCCccccceEEEEC--C-------------EEEEEEeeCC
Confidence 2344544 333221 01111 1111123468999999986 5 8888888643
No 34
>cd08986 GH43_7 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=99.09 E-value=3.9e-09 Score=107.65 Aligned_cols=179 Identities=17% Similarity=0.075 Sum_probs=111.6
Q ss_pred CccCCcceEEE-CCEEEEEeeeCCCCCC-----CCCcEEEEEEeCCCCcceecCCCCCCCCC------------ccCCce
Q 008242 57 WINDPNGVMIY-KGIYHLFYQYNPKGAV-----WGNIVWAHSTSKDLINWIPHDPAIYPSQQ------------SDINGC 118 (573)
Q Consensus 57 w~nDPng~~~~-~G~yHlfyq~~P~~~~-----~g~~~Wgha~S~Dlv~W~~~~~al~P~~~------------~d~~gv 118 (573)
|+-||. ++.+ +|+|+|+......+.. ......-.++|+||+||+..+.++..... +...++
T Consensus 1 ~~rDP~-v~~~~dg~Yy~~~T~~~~~~~~~~~~~~~~gi~i~~S~DLv~W~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~ 79 (269)
T cd08986 1 WIRDTY-VTLGPDGYYYLTGTTPPPGLPFEDCSIVNDGIPLWRSKDLKKWESLGLIWDREKDATWQSYWIDEDDWYKNAV 79 (269)
T ss_pred CCcCCe-EEecCCCcEEEEEccCCccccccccccCCCceEEEeCccccCccccCcccccCCcccccccccccCCcccCCc
Confidence 688995 5555 7899999885432210 01245778999999999999887754321 235689
Q ss_pred EeeeEEEcCCCceEEEEcccCCC-CceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCe
Q 008242 119 WSGSATILPGEKPAIFYTGIDPH-NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKR 197 (573)
Q Consensus 119 ~sGsav~~~dg~~~l~YTg~~~~-~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~ 197 (573)
|.+.++. .+|+++|+|+..... ....+++|++.+.. ..|+..... .+ ...-.||.++ .+++|+
T Consensus 80 WAP~v~~-~~g~yyl~~s~~~~~~~~~~i~va~a~~p~----Gp~~~~~~~----~~------~~~~iD~~~f-~D~DG~ 143 (269)
T cd08986 80 WAPELHY-IKGRWYLVACMNNPGYGGSSILLSTSGKIE----GPYKHITGN----KP------LFPGIDPSLF-EDDDGK 143 (269)
T ss_pred CCceEEE-ECCEEEEEEEccCCCCCceEEEEEeCCCCC----CCcEeccCC----CC------CCCccCCceE-EcCCCC
Confidence 9999876 489999999976432 23456777765542 357654221 01 0124799954 557899
Q ss_pred EEEEEeeecCCeeEEEEEEeCCCCCCEEcccccccCC----CCCccccCceEEeccCCCCCccccCCCCCceeEEEEecC
Q 008242 198 WRVIIGSKINRKGLAILYRSKDFVHWIKAKHPLHSVK----GTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLD 273 (573)
Q Consensus 198 ~~m~~g~~~~~~G~i~ly~S~Dl~~W~~~~~~~~~~~----~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~ 273 (573)
+||+.+.. .+ .--++|+....-....+.... .....|-|.+++.+ | +++|++|..
T Consensus 144 ~Yl~~~~~-----~i-~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~EgP~i~k~~--G-------------~YYL~yS~~ 202 (269)
T cd08986 144 VYLVWHNT-----LI-ARLKDDLSGLAGDPVRIDPSPTFYKDEIGHEGAFVFKYG--G-------------KYYLFGTAW 202 (269)
T ss_pred EEEEeeCC-----ce-EeccCccccccCCcEEEecccccccCCccccccEEEEEC--C-------------EEEEEEeec
Confidence 99998753 11 112566554331111111110 12357999999986 5 889988864
No 35
>cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=99.09 E-value=3.6e-09 Score=107.89 Aligned_cols=170 Identities=15% Similarity=0.087 Sum_probs=111.8
Q ss_pred CCccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCCCCCC-----------ccCCceEeeeEE
Q 008242 56 NWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQ-----------SDINGCWSGSAT 124 (573)
Q Consensus 56 gw~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~-----------~d~~gv~sGsav 124 (573)
++.-|| .+++++|+|+||....-. ...+...+|+||+||+..+.++..... .-..++|.+.++
T Consensus 9 ~~~~DP-~v~~~~~~yY~~~t~~~~-----~~gi~v~~S~Dl~~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~WAP~v~ 82 (269)
T cd09001 9 ADYPDP-DVIRVGDDYYMVSTTMHY-----SPGAPILHSKDLVNWEIIGYVYDRLDDGDAYNLENGGNAYGKGQWAPSLR 82 (269)
T ss_pred CCCCCC-eEEEECCEEEEEECCccc-----CCCCEEEEcccccCCeEcccccccccccccccccccCCCCCCCEECCceE
Confidence 455799 477789999999864211 123667899999999999877643211 112578999987
Q ss_pred EcCCCceEEEEcccCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEee
Q 008242 125 ILPGEKPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGS 204 (573)
Q Consensus 125 ~~~dg~~~l~YTg~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~ 204 (573)
.. +|+++|+|+... ..+++|+|.+.. -.|+.. +++ ....||.+++ +++|+.||+.+.
T Consensus 83 ~~-~gkyy~yys~~~----~~~~v~~a~~p~----Gpw~~~--~~~-----------~~~iDp~~f~-D~dG~~Yl~~~~ 139 (269)
T cd09001 83 YH-NGTFYVFFCTNT----GGTYIYTADDPE----GPWTKT--ALD-----------GGYHDPSLLF-DDDGTAYLVYGG 139 (269)
T ss_pred EE-CCEEEEEEEecC----CCeEEEEcCCCC----CCCcCC--CcC-----------CCcccCceEE-cCCCCEEEEeCC
Confidence 74 999999999852 346788876542 346432 111 1357999654 478999999875
Q ss_pred ecCCeeEEEEEE-eCCCCCCEEcccccccCC--CCCccccCceEEeccCCCCCccccCCCCCceeEEEEecCC
Q 008242 205 KINRKGLAILYR-SKDFVHWIKAKHPLHSVK--GTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDD 274 (573)
Q Consensus 205 ~~~~~G~i~ly~-S~Dl~~W~~~~~~~~~~~--~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~~ 274 (573)
. .|.+.+ ++|+....-....+.... .....|-|.+++-+ | +++|++|...
T Consensus 140 ~-----~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~Egp~i~k~~--G-------------~YYl~~S~~~ 192 (269)
T cd09001 140 G-----TIRLVELSPDLTGVGGKDQVIIDAGEEIGLGAEGSHLYKIN--G-------------YYYIFNIAWG 192 (269)
T ss_pred C-----cEEEEEECcccCCcCCCceEEEeCCCccccccccCeEEEEC--C-------------EEEEEEecCC
Confidence 3 345555 677665521111222221 13578999999876 5 8889888653
No 36
>cd08980 GH43_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=99.03 E-value=1.2e-08 Score=104.92 Aligned_cols=188 Identities=14% Similarity=0.116 Sum_probs=118.7
Q ss_pred CCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCC--CCCC-CccCCceEeeeEEEcCCCceEEEEc
Q 008242 60 DPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAI--YPSQ-QSDINGCWSGSATILPGEKPAIFYT 136 (573)
Q Consensus 60 DPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al--~P~~-~~d~~gv~sGsav~~~dg~~~l~YT 136 (573)
|| .++.++++|+|++.-.. ..+..++|+||+||+.....+ .+.. .+...++|.+.++. .+|+++|+|+
T Consensus 2 DP-~v~~~~d~yY~~~T~~~-------~~~~i~~S~dl~~w~~~~~~~~~~~~~~~~~~~~~WAP~i~~-~~g~yylyys 72 (288)
T cd08980 2 DP-WVIRHDGYYYFTATTGE-------DRIELRRSDTLAGLATAESKVVWTPPDSGPYSGNLWAPELHY-IDGKWYIYFA 72 (288)
T ss_pred CC-eEEEECCEEEEEEEeCC-------CcEEEEecCChhHhhcCCcEEEecCCCCCCccccEECceEEE-ECCEEEEEEE
Confidence 89 46778899999987431 357899999999999875432 2222 13446899999876 4899999999
Q ss_pred ccCC--CCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecC---CeeE
Q 008242 137 GIDP--HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKIN---RKGL 211 (573)
Q Consensus 137 g~~~--~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~---~~G~ 211 (573)
.... ...+.+++|.+++..++ +..|+.. .+++... . ..-.||.++ .+ +|++||+++.... ....
T Consensus 73 ~~~~~~~~~~~~~v~~a~~~~~~-~Gpw~~~--~~~~~~~--~----~~~iDp~~~-~d-dG~~Yl~~~~~~~~~~~~~~ 141 (288)
T cd08980 73 AGDGGGNANHRMYVLENAGADPP-TGPWTFK--GRLADPT--D----RWAIDGTVF-EH-NGQLYFVWSGWEGRTNGNQN 141 (288)
T ss_pred ccCCCCCcceeEEEEEeCCCCCC-CCCceEe--eEeccCC--C----CeeeeeEEE-EE-CCEEEEEEEccCCCCCCCcc
Confidence 8754 23456678887642112 3578874 3444222 1 224799964 53 5999999875431 2234
Q ss_pred EEEEEeCCCCCCEEcccc--cccCCC------CCccccCceEEeccCCCCCccccCCCCCceeEEEEecCCCCceeEEEE
Q 008242 212 AILYRSKDFVHWIKAKHP--LHSVKG------TGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDTKHEYYTVG 283 (573)
Q Consensus 212 i~ly~S~Dl~~W~~~~~~--~~~~~~------~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~~~~~~~Y~vG 283 (573)
|.+.+..+...+. +++ +..+.. ....|-|.+++.+ | +++|++|........|.+|
T Consensus 142 i~~~~l~~~~~~~--g~~~~i~~p~~~we~~~~~~~EgP~~~k~~--G-------------~yYl~yS~~~~~~~~Y~v~ 204 (288)
T cd08980 142 LYIAKMSNPWTLT--GPRVLISRPEYDWERQGPGVNEGPAALKRN--G-------------KVFLTYSASGSWTPDYCLG 204 (288)
T ss_pred EEEEECCCCCccC--CcceEecCCCCCceecCceeeECcEEEEEC--C-------------EEEEEEECCCCCCCCCEEE
Confidence 6666655543343 322 222211 1357999999997 5 8889888654334456665
Q ss_pred E
Q 008242 284 T 284 (573)
Q Consensus 284 ~ 284 (573)
-
T Consensus 205 ~ 205 (288)
T cd08980 205 L 205 (288)
T ss_pred E
Confidence 3
No 37
>cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function. This subfamily has sequences similar to the glycosyl hydrolase family 43 (GH43) and contains uncharacterized proteins. GH43 proteins are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=98.99 E-value=5.7e-09 Score=106.28 Aligned_cols=100 Identities=13% Similarity=0.183 Sum_probs=75.9
Q ss_pred eeeEEEcCCCceEEEEcccCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEE
Q 008242 120 SGSATILPGEKPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWR 199 (573)
Q Consensus 120 sGsav~~~dg~~~l~YTg~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~ 199 (573)
...++. .+|+++|+|++........+++|+|.|+ ++|++.. +|++.++....++...++||.|+ + .+|+|+
T Consensus 2 nP~v~~-~~G~y~l~y~~~~~~~~~~ig~A~S~Dg-----~~~~~~~-~~~i~p~~~~~~~~~gv~dP~v~-~-~~g~y~ 72 (268)
T cd08993 2 NPAVVY-DNGEFYLLYRAAGNDGVIRLGLARSRDG-----LHFEIDP-DPPVWPPPEDGFEEGGVEDPRIV-K-IDDTYY 72 (268)
T ss_pred cCeEEE-ECCEEEEEEEEECCCCceEEEEEEECCC-----ceEEECC-cceEcCCCCCcccccCccCcEEE-E-ECCEEE
Confidence 345655 5999999999876556678999999985 8999975 56553321133456778999975 4 478999
Q ss_pred EEEeeec--CCeeEEEEEEeCCCCCCEEccc
Q 008242 200 VIIGSKI--NRKGLAILYRSKDFVHWIKAKH 228 (573)
Q Consensus 200 m~~g~~~--~~~G~i~ly~S~Dl~~W~~~~~ 228 (573)
|++++.. ....+|.+++|+|+.+|++.+.
T Consensus 73 m~Yta~~~~~~~~~i~lA~S~D~~~W~~~~~ 103 (268)
T cd08993 73 ITYAARPNAPNGTRIGLATTKDFITFERLGT 103 (268)
T ss_pred EEEEccCCCCCCcEEEEEEeCCcceEEEecc
Confidence 9998865 3456799999999999999864
No 38
>cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended subs
Probab=98.96 E-value=2.6e-08 Score=102.24 Aligned_cols=170 Identities=15% Similarity=0.111 Sum_probs=107.1
Q ss_pred CccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCCCCCCccCCceEeeeEEEcCCCceEEEEc
Q 008242 57 WINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIFYT 136 (573)
Q Consensus 57 w~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~d~~gv~sGsav~~~dg~~~l~YT 136 (573)
..-|| .+++++|+|+|+..... ....+...+|+||+||+.++.++.+. ..++|.+.++. .+|+++|+|+
T Consensus 14 ~~~DP-~i~~~~~~yY~~~t~~~-----~~~gi~i~~S~DL~~W~~~g~~~~~~----~~~~WAP~i~~-~~gkyy~yys 82 (280)
T cd09002 14 DYPDP-SILRDGEDYYMTHSSFK-----YTPGLVIWHSRDLVNWTPVGPALPEY----EGDVWAPDLCK-YDGRYYIYFP 82 (280)
T ss_pred CCCCC-EEEEECCEEEEEEcchh-----cCCCEEEEECCCcCCceEccccccCC----CCCEEcCeeEE-ECCEEEEEEE
Confidence 34599 57889999999765211 12357788999999999998877542 35789998876 6999999999
Q ss_pred ccCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecCCeeEEEEEE
Q 008242 137 GIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLAILYR 216 (573)
Q Consensus 137 g~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~~~G~i~ly~ 216 (573)
.........+++|++.+.. -.|++ |+.... ....||.|++. ++|++||+.+... .+.|
T Consensus 83 ~~~~~~~~~~~va~ad~p~----Gpw~~----~~~~~~-------~~~IDp~vf~D-ddG~~Yl~~~~~~----~~~l-- 140 (280)
T cd09002 83 AIPEGGNWTNMVIWADSPE----GPWSK----PIDLKI-------GGCIDPGHVVD-EDGNRYLFLSGGD----RVRL-- 140 (280)
T ss_pred eecCCCCceEEEEEECCCC----CCCcC----CEecCC-------CCccCCceEEc-CCCCEEEEECCee----EEEE--
Confidence 8764445667889876543 34653 221111 12369996554 7899999986431 1111
Q ss_pred eCCCCCCEEcccccccC--------CCCCccccCceEEeccCCCCCccccCCCCCceeEEEEecCC
Q 008242 217 SKDFVHWIKAKHPLHSV--------KGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDD 274 (573)
Q Consensus 217 S~Dl~~W~~~~~~~~~~--------~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~~ 274 (573)
++|+..-.-....+... ..+...|-|.+++.+ | +++|++|...
T Consensus 141 ~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~--g-------------~YYl~yS~g~ 191 (280)
T cd09002 141 TADGLSTDGKLEHVYDGWRYPEDWVVEGFALEGPKLKKRN--G-------------YYYLTTAVGG 191 (280)
T ss_pred CccccEecCcCEEEecCcccccccccCCcccccceEEEEC--C-------------EEEEEEccCC
Confidence 23332111000111111 012246999999987 5 8888888543
No 39
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=98.92 E-value=2.5e-08 Score=100.06 Aligned_cols=151 Identities=21% Similarity=0.309 Sum_probs=113.2
Q ss_pred ccCCcceEEECCEEEEEeee------CCCCCCCCCcEEEEEEeCCCCc-ceecC-CCCCC-CCCccCCceEeeeEEEcCC
Q 008242 58 INDPNGVMIYKGIYHLFYQY------NPKGAVWGNIVWAHSTSKDLIN-WIPHD-PAIYP-SQQSDINGCWSGSATILPG 128 (573)
Q Consensus 58 ~nDPng~~~~~G~yHlfyq~------~P~~~~~g~~~Wgha~S~Dlv~-W~~~~-~al~P-~~~~d~~gv~sGsav~~~d 128 (573)
.-.| +++..++++||+|.- .+. ...|.+-|.|+|+++ |+-.+ +.+.| ..++|..||..+.++.. +
T Consensus 31 vFNp-av~~~~~~~~~l~Rv~~~yye~~~----~~s~l~ia~s~dgi~~~~~e~ep~~~P~~~~~e~~G~EDPRvt~I-~ 104 (314)
T COG2152 31 VFNP-AVVLVGGELLLLYRVVEGYYEDHS----SISHLRIARSDDGIGEFEIEPEPTLWPANYPYEIYGIEDPRVTKI-G 104 (314)
T ss_pred Eecc-eeEEECCEEEEEEEEeccccccCc----cceEEEEEecccCCCceecCCcceEecCCCchhhhcccCceEEEE-C
Confidence 4467 788899999999986 222 457899999999999 99885 67899 55778899999999875 8
Q ss_pred CceEEEEcccCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecC-
Q 008242 129 EKPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKIN- 207 (573)
Q Consensus 129 g~~~l~YTg~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~- 207 (573)
|+++|-|||.+ +..+..++|++.|- .+|+|. .+++.+. .||-.++=...+|+|.|+---...
T Consensus 105 ~~y~mtYTa~s-~~g~~~~la~t~~f-----~n~~ri--g~i~~pd---------n~~~~lfP~~~ngk~~~lhr~~~~~ 167 (314)
T COG2152 105 GRYYMTYTAYS-DKGPRLALAVTKDF-----LNWERI--GAIFPPD---------NKDAALFPKKINGKYALLHRPVLGE 167 (314)
T ss_pred CEEEEEEEecC-CCCcccchhhhhhh-----hhhhhc--ccccCCC---------CCCceEeeEEecCcEEEEEeecccc
Confidence 99999999986 34567789998874 789996 3444322 445442211246889998654332
Q ss_pred --CeeEEEEEEeCCCCCCEEcccccc
Q 008242 208 --RKGLAILYRSKDFVHWIKAKHPLH 231 (573)
Q Consensus 208 --~~G~i~ly~S~Dl~~W~~~~~~~~ 231 (573)
..+-|.+..|+||.+|.....++.
T Consensus 168 ~~~~~niwia~S~dl~~w~~~~~~l~ 193 (314)
T COG2152 168 YGMKGNIWIAFSPDLEHWGIHRKLLG 193 (314)
T ss_pred cCccCceEEEEcCCccCCCccceeec
Confidence 256799999999999998765554
No 40
>PF02435 Glyco_hydro_68: Levansucrase/Invertase; InterPro: IPR003469 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family consists of the glycosyl hydrolase 68 family (GH68 from CAZY), including several bacterial levansucrase enzymes, and invertase from Zymomonas. Levansucrase (2.4.1.10 from EC), also known as beta-D-fructofuranosyl transferase, catalyses the conversion of sucrose and (2,6-beta-D-fructosyl)(N) to glucose and (2,6-beta-D-fructosyl)(N+1), where other sugars can also act as fructosyl acceptors. Invertase, or extracellular sucrase (3.2.1.26 from EC), catalyses the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides.; GO: 0050053 levansucrase activity, 0009758 carbohydrate utilization; PDB: 2YFR_A 2YFT_A 2YFS_A 1W18_A 3OM7_B 3OM4_C 3OM6_D 3OM5_A 3OM2_A 1PT2_A ....
Probab=98.80 E-value=1.5e-07 Score=99.66 Aligned_cols=201 Identities=18% Similarity=0.180 Sum_probs=121.7
Q ss_pred cCCCCCccC------CcceEE-ECCEEEEEeeeCCCC----CCCCCcEEEEEEeCCCC----cceecCCCCCCCCCc-cC
Q 008242 52 QPPKNWIND------PNGVMI-YKGIYHLFYQYNPKG----AVWGNIVWAHSTSKDLI----NWIPHDPAIYPSQQS-DI 115 (573)
Q Consensus 52 ~p~~gw~nD------Png~~~-~~G~yHlfyq~~P~~----~~~g~~~Wgha~S~Dlv----~W~~~~~al~P~~~~-d~ 115 (573)
..+.=|++| +.|-+. ++|.--+|-+-.|.. ..|+..|+++.-|++.. +|+..+.++...... ..
T Consensus 50 ~~~dldVWDsWPLqd~~G~~~~~~Gy~vvfaL~a~r~~~~~~Rh~~A~I~~fY~k~G~~~~~~W~~~G~vf~~g~~~~~~ 129 (428)
T PF02435_consen 50 MADDLDVWDSWPLQDADGNVVNYNGYQVVFALTADRHEDPDDRHDDARIYLFYSKDGDNANDGWKNGGPVFPEGASFVPG 129 (428)
T ss_dssp CTTE-EEEEEEEEE-TTSSBEEBTTEEEEEEEEE-TT--GGGCSCGEEEEEEEEETT--SGGG-EEEEESS-TTCCCCGC
T ss_pred cccceeeeccceeecccccEEEECCEEEEEEEecCCccCCccccCCcEEEEEEecCCCCccCCceECcccCCCCCCCCcc
Confidence 344566665 444444 588555555655543 35778999999999999 999998877555431 12
Q ss_pred CceEeeeEEEcC-CCceEEEEcccCC----CCceeE-----EEEEEcCCCCCccceeEecCCCccccCCCCCCC------
Q 008242 116 NGCWSGSATILP-GEKPAIFYTGIDP----HNRQVQ-----NLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQI------ 179 (573)
Q Consensus 116 ~gv~sGsav~~~-dg~~~l~YTg~~~----~~~~~q-----~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~------ 179 (573)
.--|||||++.. ||++.||||.... ...|+. +++.+.+. +..+..|+++ ..|+.++. ..|
T Consensus 130 s~EWSGSA~l~~~dg~I~LfYTav~~~~~~~~~Q~l~t~~~g~~~~d~~-~v~i~g~~~~--~~lfe~DG-~~Yqt~~Q~ 205 (428)
T PF02435_consen 130 SREWSGSATLNNDDGSIQLFYTAVGFSDTPTFRQRLATATLGLIHADDD-GVWITGFSNH--HELFEGDG-KHYQTYEQN 205 (428)
T ss_dssp EEEEEEEEEESTTTSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEECST-EEEEEEEEEE--EEEES--S-SSB--HHHH
T ss_pred CcEecCceEEcCCCCeEEEEEeecccCCCcchhhhhhhHhcCeeecCCC-ceeEccccce--eEeeccch-hhhhChhhc
Confidence 446999999987 8999999999643 122221 12232321 2223445554 35665431 111
Q ss_pred CCCCccCCeeEEecCCCeEEEEEeeec---C------------------------------CeeEEEEEEeCC--CCCCE
Q 008242 180 NTSSFRDPTTAWLGPDKRWRVIIGSKI---N------------------------------RKGLAILYRSKD--FVHWI 224 (573)
Q Consensus 180 ~~~~~RDP~V~~~~~~g~~~m~~g~~~---~------------------------------~~G~i~ly~S~D--l~~W~ 224 (573)
....||||++|-...+|+-||++-+.. . ..|+|.|.+..| +..|+
T Consensus 206 ~~~afRDP~~f~DP~~G~~YLvFEgNtg~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~A~~~ng~iGi~~~~~~~~~~w~ 285 (428)
T PF02435_consen 206 PGYAFRDPHVFEDPEDGKRYLVFEGNTGGERNWANYGGDDLGNVPGDPKLENNDNKSGASYANGAIGIAKLTNDDGTVWE 285 (428)
T ss_dssp HH---EEEEEEEETTTTEEEEEEEEEBSTTSBGGGT-SHHHHHHHHHHHHHHSCCHHHHHH-EEEEEEEEESTTTTSEEE
T ss_pred CCccccCCeeEECCCCCcEEEEEecccCCCCCccccCccccccccccccccccccccccceecceeeeEEecCCCCCccE
Confidence 125699999653336899999985532 0 157899998755 45799
Q ss_pred EcccccccCCCCCccccCceEEeccCCCCCccccCCCCCceeEEEEe
Q 008242 225 KAKHPLHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVS 271 (573)
Q Consensus 225 ~~~~~~~~~~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s 271 (573)
...+++.+..-..+.|.|++++++ | ||+|+.+
T Consensus 286 ~~~PL~~a~~v~de~ERP~iv~~~--g-------------kyYLFt~ 317 (428)
T PF02435_consen 286 LLPPLLSANGVNDELERPHIVFMN--G-------------KYYLFTI 317 (428)
T ss_dssp EEEEEEEETTTBS-EEEEEEEEET--T-------------EEEEEEE
T ss_pred EeCcceecccccccccCCcEEEEC--C-------------EEEEEEE
Confidence 987544444445689999999998 6 8998755
No 41
>cd08982 GH43_3 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.78 E-value=3.9e-07 Score=94.22 Aligned_cols=169 Identities=18% Similarity=0.166 Sum_probs=100.8
Q ss_pred cCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCCCCCCccCCceEeeeEEEcCCCceEEEEccc
Q 008242 59 NDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIFYTGI 138 (573)
Q Consensus 59 nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~d~~gv~sGsav~~~dg~~~l~YTg~ 138 (573)
-||. +++++|+|+|+-.... +..+|+||++|+..+.++. ..++|.++++. .+|++|++|+..
T Consensus 4 ~DP~-i~~~~g~YY~~~T~~~----------~i~~S~DL~~W~~~g~~~~------~~~~WAP~i~~-~~g~~Y~~~~~~ 65 (295)
T cd08982 4 ADPV-VILFKGEYYLFASMSG----------GYWHSSDLIDWDFIPTNSL------PDEGYAPAVFV-YDGTLYYTASTY 65 (295)
T ss_pred CCCe-EEEECCEEEEEEeCCC----------CeEECCCcCCceECCcccC------CCCcCcCEEEE-ECCEEEEEEeCC
Confidence 5995 6778999998866421 2678999999999987764 35789999876 588876666532
Q ss_pred CCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecCCeeEEEEEE-e
Q 008242 139 DPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLAILYR-S 217 (573)
Q Consensus 139 ~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~~~G~i~ly~-S 217 (573)
.+.+|+|.+...+ .|+.. + .. ......||.++ .+++|++||+.|.... .+ |.+.+ +
T Consensus 66 ------~~~v~~s~~p~gp---~w~~~----~--~~-----~~~~~IDp~vf-~DdDGk~Yl~~g~~~~-~~-i~~~eL~ 122 (295)
T cd08982 66 ------NSRIYKTADPLSG---PWEEV----D--KS-----FPPGLADPALF-IDDDGRLYLYYGCSNN-YP-LRGVEVD 122 (295)
T ss_pred ------CceEEEeCCCCCC---Ccccc----c--cc-----cCCCccCCceE-ECCCCCEEEEEecCCC-CC-eEEEEEC
Confidence 2356777664211 25432 1 01 11235799965 4478999999875321 11 22222 1
Q ss_pred CC-----------------CCCCEEcccccccCCCCCccccCceEEeccCCCCCccccCCCCCceeEEEEecCCCCceeE
Q 008242 218 KD-----------------FVHWIKAKHPLHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDTKHEYY 280 (573)
Q Consensus 218 ~D-----------------l~~W~~~~~~~~~~~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~~~~~~~Y 280 (573)
+| -..|+..+.-..........|-|-+++.+ | +++|++|........|
T Consensus 123 ~d~~~~~g~~~~l~~~~~~~~~We~~g~~~~~~~~~~~~EGP~i~k~~--G-------------~YYL~yS~~~~~~~~Y 187 (295)
T cd08982 123 PDTFRPIGEPVELIPGNPDKHGWERFGENNDNPDKTPWMEGAWMTKHN--G-------------KYYLQYAAPGTEFNTY 187 (295)
T ss_pred cccCCccCcceEEEeCCCCCcCeEecCcccccccCCccccccEEEEEC--C-------------EEEEEEeCCCcccCcE
Confidence 22 23344432110000112356888888875 5 8888888654333445
Q ss_pred EEE
Q 008242 281 TVG 283 (573)
Q Consensus 281 ~vG 283 (573)
.+|
T Consensus 188 ~v~ 190 (295)
T cd08982 188 ADG 190 (295)
T ss_pred eEE
Confidence 554
No 42
>cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases. The glycosyl hydrolase family 62 includes eukaryotic and prokaryotic enzymes, most of which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. The enzyme does not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor does it display any non-specific arabinofuranosidase activity. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. The catalytic mechanism of this family has not yet been determined, but is predicted to display a single displacement or inverting mechanism, based on its location in the same carbohydrate-active enzymes database (CAZY) clan (Clan F) as that occupied by GH43, a well characterized inverting family. Similarly, the catalytic residues are predicted fr
Probab=98.72 E-value=5.8e-07 Score=90.62 Aligned_cols=190 Identities=18% Similarity=0.300 Sum_probs=120.8
Q ss_pred ecCCCCC---ccCCcceEEECCEEEEEeeeCCCCCCCCCcEEE-EEEeCCCCcceecCCCCC----CCCCccCCceEeee
Q 008242 51 FQPPKNW---INDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWA-HSTSKDLINWIPHDPAIY----PSQQSDINGCWSGS 122 (573)
Q Consensus 51 ~~p~~gw---~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wg-ha~S~Dlv~W~~~~~al~----P~~~~d~~gv~sGs 122 (573)
..|..|| +.|| -+++++|+||+|-..... ..|+ ...| |++|++.+.|+. +.. ...+.|.+.
T Consensus 14 ~~pk~~~~~~lkDP-tiv~~nGkYyvYgT~~~~------~~~~s~~~S--f~~Ws~~g~A~q~~l~~~~--~~~~fwAPq 82 (303)
T cd08987 14 ISPKSDWIVAIKDP-TVVYYNGRYHVYATTADA------GNYGSMYFN--FTDWSQAASATQYYLQNGN--MTGYRVAPQ 82 (303)
T ss_pred ccCCCCCeeeecCC-eEEEECCEEEEEEccCCC------CCceeeeec--ccCHhHhccchhhcccCCC--CCcccccCE
Confidence 3567899 6899 467789999999875431 1243 3445 999999887653 222 234578888
Q ss_pred EEE-cCCCceEEEEcccCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEE
Q 008242 123 ATI-LPGEKPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVI 201 (573)
Q Consensus 123 av~-~~dg~~~l~YTg~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~ 201 (573)
++. .+++++||+|+. . ..++|+|.|..+|+ .|.. ..|++... ........-|+.|+ . +++..||+
T Consensus 83 Vfyf~pk~kwYL~Yq~-~-----~~~yaTs~dp~~P~--~ws~--~qpl~~~~--~~~~~~~~ID~~vI-~-Dd~~~YLf 148 (303)
T cd08987 83 VFYFAPQNKWYLIYQW-W-----PAAYSTNSDISNPN--GWSA--PQPLFSGT--PNGSPGGWIDFWVI-C-DDTNCYLF 148 (303)
T ss_pred EeeeccCCEEEEEEec-C-----ceEEEeCCCCCCCC--ccCC--CcccccCc--ccCCCCCccceeEE-e-CCCCEEEE
Confidence 762 358999999995 2 25688888887773 5775 36887532 21223456899974 3 57788888
Q ss_pred EeeecCCeeEEEEEEeC-CCCCCEEc-cc--cccc-CCCCCccccCceEEeccCCCCCccccCCCCCceeEEEEecCCCC
Q 008242 202 IGSKINRKGLAILYRSK-DFVHWIKA-KH--PLHS-VKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDTK 276 (573)
Q Consensus 202 ~g~~~~~~G~i~ly~S~-Dl~~W~~~-~~--~~~~-~~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~~~~ 276 (573)
.... .| .||+|+ .+.+.... +. .+.. ......+|-|++++++ | ..+++|+++..+..
T Consensus 149 f~~d---nG--~iyra~~~~~nFp~~~~~~~~~~~~~~~~~lfEa~~Vykv~--G-----------~~~YlmiveA~g~~ 210 (303)
T cd08987 149 FSDD---NG--KLYRSSTTLGNFPNGGTETVIIMSDSNKNNLFEASNVYKVK--G-----------QNQYLLIVEAIGSD 210 (303)
T ss_pred EecC---CC--eEEEEecchhhCCCCCCccEEEecCCCccccceeeEEEEEC--C-----------CeEEEEEEEecCCC
Confidence 7542 34 477763 22222110 01 1111 1234679999999997 5 23899999877543
Q ss_pred ceeEEEE
Q 008242 277 HEYYTVG 283 (573)
Q Consensus 277 ~~~Y~vG 283 (573)
...|+++
T Consensus 211 ~~rYfrs 217 (303)
T cd08987 211 GGRYFRS 217 (303)
T ss_pred CCCeEEE
Confidence 4457777
No 43
>cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins. This subfamily mostly contains uncharacterized proteins similar to glycosyl hydrolase family 43 (GH43) which includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, f
Probab=98.68 E-value=1.7e-07 Score=96.57 Aligned_cols=108 Identities=19% Similarity=0.257 Sum_probs=82.0
Q ss_pred cCCcceEEECCEEEEEeeeCCCC----CCCCCcEEEEEEeCCC-Ccceec-CCCCCCCC-CccCCceEeeeEEEcCCCce
Q 008242 59 NDPNGVMIYKGIYHLFYQYNPKG----AVWGNIVWAHSTSKDL-INWIPH-DPAIYPSQ-QSDINGCWSGSATILPGEKP 131 (573)
Q Consensus 59 nDPng~~~~~G~yHlfyq~~P~~----~~~g~~~Wgha~S~Dl-v~W~~~-~~al~P~~-~~d~~gv~sGsav~~~dg~~ 131 (573)
.+| .+++++|+|||||...... ...+...+|+|+|+|+ -+|+++ .++|.|.. .||..++..++++...+|++
T Consensus 81 ~~P-~vi~~~g~yyl~Y~~~~~~~~~~~~~~~~~ig~a~s~~~~g~w~~~~~pvl~~~~~~~~~~~~~~p~v~~~~~g~~ 159 (291)
T cd08994 81 HNP-TIKRFDGKYYLYYIGNTDPGPRPGHRNNQRIGVAVSDSLDGPWKRSDQPILEPRPGGWDNLITSNPAVTRRPDGSY 159 (291)
T ss_pred cCC-eEEEECCEEEEEEEcccCCcccccCCCCceEEEEEeCCCCCCcEECCCceecCCCCccccccccCCCeEEeCCCCE
Confidence 478 4677899999999976531 1223568999999994 699994 56777754 37778899999987558999
Q ss_pred EEEEcccCCC---CceeEEEEEEcCCCCCccceeEecCCCccc
Q 008242 132 AIFYTGIDPH---NRQVQNLAVPKNLSDPYLREWVKSPKNPLM 171 (573)
Q Consensus 132 ~l~YTg~~~~---~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi 171 (573)
+|+|+|.... ..+.|++|+|.|.. .+|+|....||+
T Consensus 160 ~m~y~g~~~~~~~~~~~~gla~s~d~~----g~~~~~~~~~v~ 198 (291)
T cd08994 160 LLVYKGGTYNPTKGNRKYGVAIADSPT----GPYTKVSGPPFI 198 (291)
T ss_pred EEEEeccccCCCCCcEEEEEEEeCCCC----CCCEECCCCccc
Confidence 9999998643 45778999998752 479998656664
No 44
>cd08995 GH32_Aec43_like Glycosyl hydrolase family 32. This glycosyl hydrolase family 32 (GH32) includes characterized as well as uncharacterized proteins. GH32 enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). GH32 family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an a
Probab=98.67 E-value=5.4e-07 Score=92.20 Aligned_cols=133 Identities=20% Similarity=0.208 Sum_probs=88.1
Q ss_pred ccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecC--CCCCCCCCccCCceEeeeEEEcC-CCceEEE
Q 008242 58 INDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHD--PAIYPSQQSDINGCWSGSATILP-GEKPAIF 134 (573)
Q Consensus 58 ~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~--~al~P~~~~d~~gv~sGsav~~~-dg~~~l~ 134 (573)
+..|+ ++..+|+|||||..+... .....+.++|+|+|+.+|++.+ +++.+...++...+-.+.++.++ +|+++|+
T Consensus 62 ~~sgs-~~~~~g~~~l~YTg~~~~-~~~~~~i~~A~S~D~~~w~k~~~~pv~~~~~~~~~~~~rDP~Vf~~~~~g~y~m~ 139 (280)
T cd08995 62 IGTGS-VIKGEGTYHAFYTGHNLD-GKPKQVVMHATSDDLITWTKDPEFILIADGEGYEKNDWRDPFVFWNEEEGCYWML 139 (280)
T ss_pred ceEeE-EEeeCCEEEEEEEEECCC-CCCcEEEEEEECCCCCccEECCCCeecCCccccccCCccCCcEEEcCCCCeEEEE
Confidence 44563 566899999999876432 1234679999999999999975 33432223333344567777653 5899999
Q ss_pred EcccCC----CCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeec
Q 008242 135 YTGIDP----HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI 206 (573)
Q Consensus 135 YTg~~~----~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~ 206 (573)
|.+... .....+.++.|.| |++|+.. .+++.+. . ...+.-|.+ ++ .+|+|+|+++.+.
T Consensus 140 ~g~~~~~~~~~~~g~i~~~~S~D-----l~~W~~~--~~~~~~~--~---~~~~E~P~l-~~-~~g~~~L~~s~~~ 201 (280)
T cd08995 140 LATRLLDGPYNRRGCIALFTSKD-----LKNWEYE--EPFYAPG--L---YFMPECPDL-FK-MGDWWYLVYSEFS 201 (280)
T ss_pred EEeccCCCCCCCCeEEEEEEeCC-----cCcceec--CceecCC--C---cceeecceE-EE-ECCEEEEEEEecc
Confidence 987543 2334566777776 4899875 4665432 2 124678985 44 5789999998764
No 45
>cd08999 GH43_ABN_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=98.61 E-value=1.4e-06 Score=89.39 Aligned_cols=156 Identities=15% Similarity=0.130 Sum_probs=99.8
Q ss_pred CccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCC-cceecCCCC-C-CCCCccCCceEeeeEEEcCCCceEE
Q 008242 57 WINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLI-NWIPHDPAI-Y-PSQQSDINGCWSGSATILPGEKPAI 133 (573)
Q Consensus 57 w~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv-~W~~~~~al-~-P~~~~d~~gv~sGsav~~~dg~~~l 133 (573)
-+..| .+++++|+|||||..+... .....+++|+|+|.. .|++.+..+ . +.. ..+...+++++++||+++|
T Consensus 61 ~~waP-~v~~~~g~y~~~y~~~~~~--~~~~~i~~a~s~~p~g~~~~~~~~~~~~~~~---~~~~~Dp~v~~d~dG~~Yl 134 (287)
T cd08999 61 DFWAP-DVSYVNGKYVLYYSARDKG--SGGQCIGVATADSPLGPFTDHGKPPLCCPEG---EGGAIDPSFFTDTDGKRYL 134 (287)
T ss_pred CccCc-eEEEECCEEEEEEEeecCC--CCCEEEEEEECCCCCCCCccCCcceEecCCC---CCCccCCCeEECCCCCEEE
Confidence 35567 4788999999999876543 235679999999965 999875332 2 222 2346778888877899999
Q ss_pred EEcccCCC--CceeEEEE-EEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeec--CC
Q 008242 134 FYTGIDPH--NRQVQNLA-VPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI--NR 208 (573)
Q Consensus 134 ~YTg~~~~--~~~~q~lA-~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~--~~ 208 (573)
+|.+.... ..+.+.++ .+.|. .+|... ...++.+. ..+....+.-|.++ + .+|+|||++++.. ..
T Consensus 135 ~~~~~~~~~~~~~~i~~~~ls~d~-----~~~~~~-~~~i~~~~--~~~~~~~~EgP~i~-k-~~g~yyl~~S~~~~~~~ 204 (287)
T cd08999 135 VWKSDGNSIGKPTPIYLQELSADG-----LTLTGE-PVRLLRND--EDWEGPLVEAPYLV-K-RGGYYYLFYSAGGCCSG 204 (287)
T ss_pred EEeccCCCCCCCceEEEEEeCCCC-----ccccCC-cEeeeccc--ccccCCceEeeEEE-E-ECCEEEEEEEcCCccCC
Confidence 99764321 12224444 44443 566543 12343322 22233457789854 5 5899999998753 11
Q ss_pred --eeEEEEEEeCCCC-CCEEccc
Q 008242 209 --KGLAILYRSKDFV-HWIKAKH 228 (573)
Q Consensus 209 --~G~i~ly~S~Dl~-~W~~~~~ 228 (573)
.=++.+++|+++. .|+....
T Consensus 205 ~~~y~i~~~~s~~~~Gpw~~~~~ 227 (287)
T cd08999 205 ASTYAVGVARSKSLLGPYVKAPG 227 (287)
T ss_pred CCCEEEEEEEeCCCcCCcCCCCC
Confidence 2257889999987 7887543
No 46
>cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of
Probab=98.60 E-value=3e-06 Score=86.55 Aligned_cols=155 Identities=11% Similarity=0.027 Sum_probs=97.3
Q ss_pred CCCccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCC-cceecCCC-CCCCCCccCCceEeeeEEEcCCCceE
Q 008242 55 KNWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLI-NWIPHDPA-IYPSQQSDINGCWSGSATILPGEKPA 132 (573)
Q Consensus 55 ~gw~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv-~W~~~~~a-l~P~~~~d~~gv~sGsav~~~dg~~~ 132 (573)
.+-+.-|. +++++|+|||||..... .+....|+|+|+|.. .|++.... +.+ ...+......++++++.||+++
T Consensus 61 ~~~~wAP~-i~~~~g~yy~yy~~~~~---~~~~~igva~s~~p~Gpw~~~~~~~~~~-~~~~~~~~iDp~vf~d~dG~~y 135 (274)
T cd08990 61 KGQAWAPD-VVEKNGKYYLYFPARDK---DGGFAIGVAVSDSPAGPFKDAGGPILIT-TPSGGWYSIDPAVFIDDDGQAY 135 (274)
T ss_pred cCCcCcCe-EEEECCEEEEEEEeecC---CCceEEEEEEeCCCCCCCCCCCCccccc-cCCCCCCccCCcEEECCCCCEE
Confidence 34466784 78899999999997643 235679999999976 89997543 322 2222344567888887789999
Q ss_pred EEEcccCCCCceeEEEE-EEcCCCCCccceeEecCCCccccCCC-CCCCCCCCccCCeeEEecCCCeEEEEEeeecCCee
Q 008242 133 IFYTGIDPHNRQVQNLA-VPKNLSDPYLREWVKSPKNPLMAPDA-MNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKG 210 (573)
Q Consensus 133 l~YTg~~~~~~~~q~lA-~s~d~~~~~l~~w~k~~~nPvi~~~~-~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~~~G 210 (573)
|+|.+. +...++ .+.| +.+|+.. ..+|..+. ........+.-|.+ ++ .+|.|||++++.. ..
T Consensus 136 l~~~~~-----~~~~~~~l~~d-----~~~~~~~--~~~i~~~~~~~~~~~~~~EgP~i-~k-~~G~YYl~yS~~~--~~ 199 (274)
T cd08990 136 LYWGGG-----LGLRVAKLKPD-----MLSLKGE--PVEIVITDGAGDELRRFFEAPWV-HK-RNGTYYLSYSTGD--PE 199 (274)
T ss_pred EEECCc-----CCEEEEEeCcc-----ccccCCC--cEEEEeccccCCCCCCcccceeE-EE-ECCEEEEEEECCC--Cc
Confidence 999864 223444 3333 3566542 22332110 01111223467885 45 5899999998743 34
Q ss_pred EEEEEEeCCCC-CCEEccccc
Q 008242 211 LAILYRSKDFV-HWIKAKHPL 230 (573)
Q Consensus 211 ~i~ly~S~Dl~-~W~~~~~~~ 230 (573)
++.+.+|+++. -|+..+.++
T Consensus 200 ~~~~a~s~~p~GP~~~~g~~~ 220 (274)
T cd08990 200 EIAYATSDSPLGPFTYRGVIL 220 (274)
T ss_pred EEEEEEcCCCCCCcccCcEEe
Confidence 67778888875 477655433
No 47
>cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=98.55 E-value=7e-06 Score=84.56 Aligned_cols=157 Identities=13% Similarity=0.115 Sum_probs=95.1
Q ss_pred CCccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCC-cceecCCCCCCCCCccCCceEeeeEEEcCCCceEEE
Q 008242 56 NWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLI-NWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIF 134 (573)
Q Consensus 56 gw~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv-~W~~~~~al~P~~~~d~~gv~sGsav~~~dg~~~l~ 134 (573)
+.+..| .+++.+|+|||||...... .....+++|+|+|.. .|+..+..+.+.+ .....++++.++||+++|+
T Consensus 53 ~~~waP-~v~~~~g~yyl~ys~~~~~--~~~~~i~~a~s~~p~gp~~~~~~~~~~~~----~~~iD~~vf~d~dG~~yl~ 125 (294)
T cd08991 53 RGFWAP-EVYYYNGKFYMYYSANDRD--EKTEHIGVAVSDSPLGPFRDIKKPPIDFE----PKSIDAHPFIDDDGKPYLY 125 (294)
T ss_pred CcEEcc-EEEEECCEEEEEEEeccCC--CCcceEEEEEeCCCCCCCCcCCCCcccCC----CcccCCceEECCCCCEEEE
Confidence 346688 5888999999999876433 235688999999976 8888754433322 2356788888877999999
Q ss_pred EcccCCCC--ceeEEEEEEcCCCCCccceeEecCC---CccccC-------C-CC-CCCCCCCccCCeeEEecCCCeEEE
Q 008242 135 YTGIDPHN--RQVQNLAVPKNLSDPYLREWVKSPK---NPLMAP-------D-AM-NQINTSSFRDPTTAWLGPDKRWRV 200 (573)
Q Consensus 135 YTg~~~~~--~~~q~lA~s~d~~~~~l~~w~k~~~---nPvi~~-------~-~~-~~~~~~~~RDP~V~~~~~~g~~~m 200 (573)
|+...... ......+.+.|. .+|..... .|+..+ + .. ...+.....-|.++ + .+|.|||
T Consensus 126 ~~~~~~~~~~~~i~~~~l~~d~-----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~EgP~~~-k-~~g~yyl 198 (294)
T cd08991 126 YSRNNYGNRVSDIYGTELVDDK-----LSIKTELVGPPIPVSAPGIDEIFERWRFGEGKDWRTNEGPTVL-K-HNGRYYL 198 (294)
T ss_pred EEecCCCCcccceEEEEEccce-----eeeccceeeccccccccccccccccccccccccCceeeCcEEE-E-ECCEEEE
Confidence 98654321 223344565553 44542111 122211 0 00 00112235678754 4 4789999
Q ss_pred EEeeec-C-CeeEEEEEEeCCC-CCCEEc
Q 008242 201 IIGSKI-N-RKGLAILYRSKDF-VHWIKA 226 (573)
Q Consensus 201 ~~g~~~-~-~~G~i~ly~S~Dl-~~W~~~ 226 (573)
++.+.. . ..-.+.+++|+++ -.|+..
T Consensus 199 ~ys~~~~~~~~y~~~~a~s~~~~gp~~~~ 227 (294)
T cd08991 199 TYSANHYENEDYGVGYATADSPLGPWTKY 227 (294)
T ss_pred EEECCCCCCCCceEEEEEcCCCCCCcEec
Confidence 987643 1 1114677888874 578875
No 48
>cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F. This glycosyl hydrolase clan F (according to carbohydrate-active enzymes database (CAZY)) includes family 43 (GH43) and 62 (GH62). GH43 includes enzymes with beta-xylosidase (EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanases (beta-xylanases) and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. GH62 includes enzymes characterized as arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Ma
Probab=98.54 E-value=2.5e-06 Score=86.19 Aligned_cols=157 Identities=13% Similarity=0.107 Sum_probs=98.9
Q ss_pred CCCccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCCCCCCccCCceEeeeEEEcCCCceEEE
Q 008242 55 KNWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIF 134 (573)
Q Consensus 55 ~gw~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~d~~gv~sGsav~~~dg~~~l~ 134 (573)
.+.+.+|. +++++|+|||||.....+ ....+.+.|+|+|+.+|....... +... ...++..++++.++||+++|+
T Consensus 56 ~~~~waP~-v~~~~g~yyl~y~~~~~~--~~~~~i~~a~s~d~~g~~~~~~~~-~~~~-~~~~~iDp~vf~d~dg~~yl~ 130 (271)
T cd08978 56 SGGLWAPE-VIYYEGKYYLYYSVSDFD--YNGSGIGVATSEDPTGPFEDKVIR-PPTS-NNGNSIDPTVFKDDDGKYYLY 130 (271)
T ss_pred CCceeCCe-EEEECCEEEEEEEcccCC--CCcccEEEEECCCCCCCccccccC-cCcc-CCCCccCcceEEcCCCCEEEE
Confidence 45678994 788999999999987642 235679999999999998754211 1111 224577899998867999999
Q ss_pred EcccCCC-CceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecC--CeeE
Q 008242 135 YTGIDPH-NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKIN--RKGL 211 (573)
Q Consensus 135 YTg~~~~-~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~--~~G~ 211 (573)
|.+.... ....+.++.+.+. ..|.. ..+++... .......+..|.+ ++ .+|.|||++.+... ..-+
T Consensus 131 ~~~~~~~~~~~~i~~~~l~~~-----~~~~~--~~~~~~~~--~~~~~~~~EgP~~-~k-~~g~yyl~ys~~~~~~~~y~ 199 (271)
T cd08978 131 YGSGDPGAGFGGIYISELTDD-----LTKPT--GPPVLSAS--SGNNNAVTEGPTI-FK-KNGYYYLTYSANGTGDYGYN 199 (271)
T ss_pred EecccCCCCCCcEEEEEECcc-----ccccc--CCceeeee--eccCCCceEccEE-EE-ECCEEEEEEEeCCCCCCCce
Confidence 9876421 2234556666543 22222 22332111 1112234679995 45 47899999877532 2346
Q ss_pred EEEEEeCCCC-CCEEcc
Q 008242 212 AILYRSKDFV-HWIKAK 227 (573)
Q Consensus 212 i~ly~S~Dl~-~W~~~~ 227 (573)
+.+++|++.. -|+..+
T Consensus 200 ~~~~~s~~~~Gp~~~~~ 216 (271)
T cd08978 200 IGYATSDSIDGPYVKKG 216 (271)
T ss_pred EEEEECCCCCCCcCcCC
Confidence 7788888874 466543
No 49
>PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety. On the basis of sequence and structural similarity, the glycoside hydrolase family belongs to the beta-fructosidase (furanosidase) superfamily of glycosyl hydrolases. This leads to the prediction that proteins of this family have a glycosidase (glycoside hydrolase) activity and, most probably, act on a furanoside residue (fructose, arabinose and ribose). Crystal structure from Thermotoga maritima a member of this family, determined to high-resolution by Structural Genomics initiatives, reveals a five-bladed beta-propeller fold with three acidic residues forming the active site.; PDB: 1VKD_A 3TAW_A 3QC2_B 3R67_B.
Probab=98.51 E-value=1.5e-06 Score=90.52 Aligned_cols=103 Identities=17% Similarity=0.278 Sum_probs=79.0
Q ss_pred CCceEeeeEEEcCCCc--eEEEEcccCCCCce-eEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEE
Q 008242 115 INGCWSGSATILPGEK--PAIFYTGIDPHNRQ-VQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAW 191 (573)
Q Consensus 115 ~~gv~sGsav~~~dg~--~~l~YTg~~~~~~~-~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~ 191 (573)
...||.+.|++. +|. ++|+|-+....... .+++|.|.|+ ++|++. .+||+.|. ..++.....||.|+.
T Consensus 29 ~~~vfNpgai~~-~~~~R~~l~yr~~~~~~~~~~iglA~S~DG-----i~f~~~-~~pil~P~--~~~e~~GvEDPRVt~ 99 (312)
T PF04041_consen 29 PNAVFNPGAIVF-DGGLRVYLLYRAYGSDIGSSRIGLARSDDG-----IHFERD-PEPILYPD--TDYEEWGVEDPRVTK 99 (312)
T ss_dssp SSEEEEEEEEEE-TTE--EEEEEEEEESSSSEEEEEEEEESSS-----SS-EE--SS-SBEE---SSTTHTEEEEEEEEE
T ss_pred cceEEcCcEEEE-CCeeEEEEEEEeECCCCceeEEEEEEccCC-----cCceEC-CCCEEccC--CCCcccCccceeEEE
Confidence 467999999864 555 89988877654444 8999999986 789986 57999766 455666789999876
Q ss_pred ecCCCeEEEEEeeecCCeeEEEEEEeCCCCCCEEccc
Q 008242 192 LGPDKRWRVIIGSKINRKGLAILYRSKDFVHWIKAKH 228 (573)
Q Consensus 192 ~~~~g~~~m~~g~~~~~~G~i~ly~S~Dl~~W~~~~~ 228 (573)
. ++.|||++.+......++.+.+|+|+++|+..+.
T Consensus 100 i--~d~yymtYta~~~~~~~~~la~s~D~~~~~r~g~ 134 (312)
T PF04041_consen 100 I--DDTYYMTYTAYSGKGPRIGLATSKDFKHWERHGK 134 (312)
T ss_dssp E--TTEEEEEEEEEESSSEEEEEEEESSSSSEEEEEC
T ss_pred E--CCEEEEEEEEecCCCcccceEEccchHhhEEecc
Confidence 5 6799999998775556788999999999999874
No 50
>cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68. Members of the glycosyl hydrolase families 32, 43, 62 and 68 (GH32, GH43, GH62, GH68) all possess 5-bladed beta-propeller domains and comprise clans F and J, as classified by the carbohydrate-active enzymes database (CAZY). Clan F consists of families GH43 and GH62. GH43 includes beta-xylosidases, beta-xylanases, alpha-L-arabinases, and alpha-L-arabinofuranosidases, using aryl-glycosides as substrates, while family GH62 contains alpha-L-arabinofuranosidases (EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose sidechains from xylans. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Clan J consists of families GH32 and GH68. GH32
Probab=98.41 E-value=7.1e-06 Score=83.27 Aligned_cols=157 Identities=13% Similarity=0.113 Sum_probs=100.3
Q ss_pred CCccCCcceEEEC-CEEEEEeeeCCCCCCCCCcEEEEEEeCCCCc-ceecC-CCCCCC--CCccCCceEeeeEEEcCCCc
Q 008242 56 NWINDPNGVMIYK-GIYHLFYQYNPKGAVWGNIVWAHSTSKDLIN-WIPHD-PAIYPS--QQSDINGCWSGSATILPGEK 130 (573)
Q Consensus 56 gw~nDPng~~~~~-G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~-W~~~~-~al~P~--~~~d~~gv~sGsav~~~dg~ 130 (573)
+-+..|. +++.+ |+|+|||..... ..+....+.|+|+|+.. |++.. ..+.+. ...+...+..++++.++||+
T Consensus 58 ~~~wap~-v~~~~~g~~~l~yt~~~~--~~~~~~i~~a~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~v~~d~dG~ 134 (286)
T cd08772 58 GGIWAPS-IVYIENGKFYLYYTDVSF--TKNQQTIGVATAEDGNGPWTDYIGGPVLPDNPPAADVSNFRDPFVFEDDDGK 134 (286)
T ss_pred CcEecce-EEEcCCCCEEEEEEeecC--CCCceeEEEEEcCCCCCCCccccccccccCCCCccccccccCCeEEEcCCCC
Confidence 4467884 67777 999999987643 22456899999999974 56542 112222 11233457889998876699
Q ss_pred eEEEEcccCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeec----
Q 008242 131 PAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI---- 206 (573)
Q Consensus 131 ~~l~YTg~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~---- 206 (573)
++|+|.+........+.+|.|.|. .+|++....+++... .....+.-|.++ + .+|+|||++++..
T Consensus 135 ~y~~~~~~~~~~~~~i~~~~s~d~-----~~w~~~~~~~~~~~~----~~~~~~E~P~~~-~-~~g~~yL~~s~~~~~~~ 203 (286)
T cd08772 135 WYLVFGSGDHHNFGGIFLYESDDD-----TTWKKGSAELLISEG----EGGKQIEGPGLL-K-KNGKYYLFYSINGTGRV 203 (286)
T ss_pred EEEEEccccCCCCCeEEEEEcCCC-----CCcccccceeeEeec----cCCCceeccEEE-E-ECCEEEEEEEcCCCcCC
Confidence 999998765333456788888874 678765322222221 123457889964 4 4789999998754
Q ss_pred CCeeEEEEEEeCC-CCCCEEc
Q 008242 207 NRKGLAILYRSKD-FVHWIKA 226 (573)
Q Consensus 207 ~~~G~i~ly~S~D-l~~W~~~ 226 (573)
...-++.+++|++ +-.|+..
T Consensus 204 ~~~y~~~~~~~~~~~g~~~~~ 224 (286)
T cd08772 204 DSTYSIGYARSESDTGPYVPK 224 (286)
T ss_pred CCCcceEEEEccCCCCCcccC
Confidence 1223566777765 3346544
No 51
>cd08983 GH43_4 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.28 E-value=2.7e-06 Score=87.10 Aligned_cols=89 Identities=20% Similarity=0.330 Sum_probs=63.8
Q ss_pred CCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeec-----CCeeEEEEEEeCCCCCCEEcccccccC-CCCCccc
Q 008242 167 KNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI-----NRKGLAILYRSKDFVHWIKAKHPLHSV-KGTGMWE 240 (573)
Q Consensus 167 ~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~-----~~~G~i~ly~S~Dl~~W~~~~~~~~~~-~~~~~wE 240 (573)
++|||.+. . ....+|||+|++..++|.|||+..... .....|.+++|+||.+|+..+..+... ..+.+|
T Consensus 5 ~~pvl~~~--~--g~~~~rDP~I~r~~~~g~yy~~~T~~~~~~~~~~~~~i~i~~S~DLv~W~~~~~~~~~~~~~~~~W- 79 (276)
T cd08983 5 GNPVLTST--A--GTKGLRDPFILRSHEGGKYYMIATDLKITGQTNGSQYIVVWESTDLVNWTFQRLVKVNPPNAGNTW- 79 (276)
T ss_pred CceEEeCC--c--CCCCccCCeEEEcCCCCEEEEEEEecCcCCcccCCCeEEEEECCcccCCcccceeecCCCCcCcEe-
Confidence 68999765 2 246799999876546789999876642 122358899999999999887543222 234567
Q ss_pred cCceEEeccCCCCCccccCCCCCceeEEEEecC
Q 008242 241 CPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLD 273 (573)
Q Consensus 241 cPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~ 273 (573)
||++|..+..| +|+|.+|..
T Consensus 80 APev~~d~~~g-------------~y~~~~s~~ 99 (276)
T cd08983 80 APEAFWDAERG-------------QYVVYWSSR 99 (276)
T ss_pred CccceEcCCCC-------------eEEEEEecc
Confidence 99999886434 888888764
No 52
>cd08986 GH43_7 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.27 E-value=8.6e-06 Score=83.09 Aligned_cols=121 Identities=17% Similarity=0.142 Sum_probs=71.7
Q ss_pred ccCCeeEEecCCCeEEEEEeeecC---------CeeEEEEEEeCCCCCCEEcccccccCC--------------CCCccc
Q 008242 184 FRDPTTAWLGPDKRWRVIIGSKIN---------RKGLAILYRSKDFVHWIKAKHPLHSVK--------------GTGMWE 240 (573)
Q Consensus 184 ~RDP~V~~~~~~g~~~m~~g~~~~---------~~G~i~ly~S~Dl~~W~~~~~~~~~~~--------------~~~~wE 240 (573)
+|||+|++. .+|.|||+..+... ..+.|.+|+|+||.+|+..+..+.... .....+
T Consensus 2 ~rDP~v~~~-~dg~Yy~~~T~~~~~~~~~~~~~~~~gi~i~~S~DLv~W~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~W 80 (269)
T cd08986 2 IRDTYVTLG-PDGYYYLTGTTPPPGLPFEDCSIVNDGIPLWRSKDLKKWESLGLIWDREKDATWQSYWIDEDDWYKNAVW 80 (269)
T ss_pred CcCCeEEec-CCCcEEEEEccCCccccccccccCCCceEEEeCccccCccccCcccccCCcccccccccccCCcccCCcC
Confidence 799997644 57788888765431 124588999999999999875442111 123456
Q ss_pred cCceEEeccCCCCCccccCCCCCceeEEEEecCCC--CceeEEEEEEeCCCCeeecCCCCcCCCCccccccCCCccceeE
Q 008242 241 CPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLDDT--KHEYYTVGTYSTAKDRYVPDEGSVESDSGLRFDYGKYYASKTF 318 (573)
Q Consensus 241 cPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~~~--~~~~Y~vG~~d~~~~~f~~~~~~~~~~~~~~lD~G~fYA~qt~ 318 (573)
+|+++.++ | +|+|.+|.... ......+..-+...+.|+..... ..+ ..-.-+..|
T Consensus 81 AP~v~~~~--g-------------~yyl~~s~~~~~~~~~~i~va~a~~p~Gp~~~~~~~------~~~--~~~iD~~~f 137 (269)
T cd08986 81 APELHYIK--G-------------RWYLVACMNNPGYGGSSILLSTSGKIEGPYKHITGN------KPL--FPGIDPSLF 137 (269)
T ss_pred CceEEEEC--C-------------EEEEEEEccCCCCCceEEEEEeCCCCCCCcEeccCC------CCC--CCccCCceE
Confidence 99999997 6 88988876531 11223333322223445422110 001 013456788
Q ss_pred ecCCCCcEEEE
Q 008242 319 FDGAKNRRVLW 329 (573)
Q Consensus 319 ~d~~~grri~~ 329 (573)
.|. +|+..|+
T Consensus 138 ~D~-DG~~Yl~ 147 (269)
T cd08986 138 EDD-DGKVYLV 147 (269)
T ss_pred EcC-CCCEEEE
Confidence 875 6777665
No 53
>cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases. Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catal
Probab=98.20 E-value=1.5e-05 Score=82.18 Aligned_cols=133 Identities=14% Similarity=0.061 Sum_probs=88.3
Q ss_pred CCcceEEEC-CEEEEEeeeCCCCCCCCCcEEEEEEeC-CCCcceecCCC-CCCCCCccCCceEeeeEEEcCCCceEEEEc
Q 008242 60 DPNGVMIYK-GIYHLFYQYNPKGAVWGNIVWAHSTSK-DLINWIPHDPA-IYPSQQSDINGCWSGSATILPGEKPAIFYT 136 (573)
Q Consensus 60 DPng~~~~~-G~yHlfyq~~P~~~~~g~~~Wgha~S~-Dlv~W~~~~~a-l~P~~~~d~~gv~sGsav~~~dg~~~l~YT 136 (573)
.++ ++.++ |+|+|||..+......+....++|+|+ |+++|++.+.. +.+....+..+.-.+.++.+ +|+++|+|+
T Consensus 65 sGs-av~~~~g~~~~~YTg~~~~~~~~~~~~~lA~S~ddg~~w~k~~~~~~~~~~~~~~~~~RDP~V~~~-~g~~~m~~g 142 (298)
T cd08996 65 SGS-AVVDDNGKLVLFYTGNVKLDGGRRQTQCLAYSTDDGRTFTKYEGNPVIPPPDGYTTHFRDPKVFWH-DGKWYMVLG 142 (298)
T ss_pred eCe-EEEcCCCcEEEEEeceeCCCCCceEEEEEEEEcCCCCEEEECCCCceEcCCCCCCCcccCCeEEeE-CCEEEEEEE
Confidence 453 34456 999999997643211245678999999 89999998532 22111223345667888775 799999999
Q ss_pred ccCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCC--CeEEEEEeeec
Q 008242 137 GIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPD--KRWRVIIGSKI 206 (573)
Q Consensus 137 g~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~--g~~~m~~g~~~ 206 (573)
+...+....+.++.|.| |++|++. .++.... ......+.-|.++ + .+ ++|+|+++...
T Consensus 143 ~~~~~~~~~i~ly~S~D-----l~~W~~~--~~~~~~~---~~~~~~~EcP~l~-~-l~~~~k~vL~~s~~~ 202 (298)
T cd08996 143 AGTEDGTGRILLYRSDD-----LKNWEYL--GELLTSL---GDFGYMWECPDLF-P-LDVEGKWVLIFSPQG 202 (298)
T ss_pred EEecCCCcEEEEEECCC-----CCCCEEc--ceecccC---CCccceEeCCcEE-E-ECCCCeEEEEECCCC
Confidence 87654445677888877 4899975 3453221 1123457899854 4 45 89999998764
No 54
>cd08998 GH43_ABN_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-b
Probab=98.19 E-value=4.6e-05 Score=78.41 Aligned_cols=154 Identities=14% Similarity=0.084 Sum_probs=93.2
Q ss_pred CCCccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCC--CcceecCCCCCCCCCccCCceEeeeEEEcCCCceE
Q 008242 55 KNWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDL--INWIPHDPAIYPSQQSDINGCWSGSATILPGEKPA 132 (573)
Q Consensus 55 ~gw~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dl--v~W~~~~~al~P~~~~d~~gv~sGsav~~~dg~~~ 132 (573)
.+-+..| -+++.+|+|||||..+..+. +....++|+|+|+ -.|+..++++.+........+..++++.++||+++
T Consensus 55 ~~~~wAP-~v~~~~g~yyl~ys~~~~~~--~~~~i~va~s~~~~~gpw~~~~~v~~~~~~~~~~~~iDp~vf~d~dG~~Y 131 (288)
T cd08998 55 SGNLWAP-DVIYLNGKYYLYYSVSTFGS--NRSAIGLATSDTLPDGPWTDHGIVIESGPGRDDPNAIDPNVFYDEDGKLW 131 (288)
T ss_pred CCCccCC-eEEEECCEEEEEEEEEeCCC--CceEEEEEEeCCCCCCCCEEcceeeecCCCCCCcccccCCEEEcCCCCEE
Confidence 4456788 47788999999998764331 3457899999999 79999876665543212335678899887789999
Q ss_pred EEEcccCCCCceeEEEEE-EcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeec-C---
Q 008242 133 IFYTGIDPHNRQVQNLAV-PKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI-N--- 207 (573)
Q Consensus 133 l~YTg~~~~~~~~q~lA~-s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~-~--- 207 (573)
|+|.+... .+.++. +.|.+.+ ..+... ...++..+ . .......|++ ++ .+|.|||++++.. .
T Consensus 132 l~~~~~~~----~i~~~~l~~~~~~~--~~~~~~-~~~i~~~~--~--~~~~~Egp~~-~k-~~g~YYl~~S~~~~~~~~ 198 (288)
T cd08998 132 LSFGSFWG----GIFLVELDPKTGKP--LYPGGY-GYNIAGRP--R--GHGAIEAPYI-IY-RGGYYYLFVSYGGCCAGE 198 (288)
T ss_pred EEeeeccC----CEEEEEeCcccCCc--cCCCCc-ceEEeccC--C--CCCceeeeEE-EE-eCCEEEEEEEcchhcCCC
Confidence 99975421 123332 2332211 122100 01122221 1 1123578995 45 5799999986532 1
Q ss_pred Cee-EEEEEEeCCCC-CCE
Q 008242 208 RKG-LAILYRSKDFV-HWI 224 (573)
Q Consensus 208 ~~G-~i~ly~S~Dl~-~W~ 224 (573)
..+ ++.+++|+++. -|+
T Consensus 199 ~~~y~v~~~~s~~~~GP~~ 217 (288)
T cd08998 199 DSTYNIRVGRSKSITGPYV 217 (288)
T ss_pred CCceEEEEEEcCCCCCCcC
Confidence 112 57889998864 354
No 55
>cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended
Probab=98.14 E-value=3.1e-05 Score=78.97 Aligned_cols=71 Identities=23% Similarity=0.333 Sum_probs=51.7
Q ss_pred ccCCeeEEecCCCeEEEEEeeecCCeeEEEEEEeCCCCCCEEcccccccC---------CCCCccccCceEEeccCCCCC
Q 008242 184 FRDPTTAWLGPDKRWRVIIGSKINRKGLAILYRSKDFVHWIKAKHPLHSV---------KGTGMWECPDFFPVSTYGLNG 254 (573)
Q Consensus 184 ~RDP~V~~~~~~g~~~m~~g~~~~~~G~i~ly~S~Dl~~W~~~~~~~~~~---------~~~~~wEcPdlf~l~~~g~~~ 254 (573)
+.||.|+. .++.|||+.+......| +.+++|+||.+|+..+..+... ...++| +|+++.++ |
T Consensus 8 ~~DP~ii~--~~~~yY~~~t~~~~~~g-~~~~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~~~~W-AP~v~~~~--G--- 78 (269)
T cd08989 8 NPDPSIIR--AGDDYYMASSTFEWFPG-VQIHHSTDLVNWHLIGHPLDRLEDLDMKGNPYSGGIW-APCLSYYD--G--- 78 (269)
T ss_pred CCCCcEEE--ECCeEEEEECccccCCC-cEEEECCccCCCEEccccccCccccccccCCCCCcEE-cceEEEEC--C---
Confidence 67999764 46889999765432233 7899999999999987543321 123467 99999987 6
Q ss_pred ccccCCCCCceeEEEEecC
Q 008242 255 LDTSDMGPNTKHVLKVSLD 273 (573)
Q Consensus 255 ~~~~~~~~~~~~vl~~s~~ 273 (573)
||+|.++..
T Consensus 79 ----------~yy~yy~~~ 87 (269)
T cd08989 79 ----------KFWLIYTAV 87 (269)
T ss_pred ----------EEEEEEecc
Confidence 888888764
No 56
>cd08981 GH43_2 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=98.10 E-value=4.3e-05 Score=78.87 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=55.4
Q ss_pred CCccCCeeEEecCCCeEEEEEeeecCC----eeEEEEEEeCCCCCCEEcccccccCC---CCCccccCceEEeccCCCCC
Q 008242 182 SSFRDPTTAWLGPDKRWRVIIGSKINR----KGLAILYRSKDFVHWIKAKHPLHSVK---GTGMWECPDFFPVSTYGLNG 254 (573)
Q Consensus 182 ~~~RDP~V~~~~~~g~~~m~~g~~~~~----~G~i~ly~S~Dl~~W~~~~~~~~~~~---~~~~wEcPdlf~l~~~g~~~ 254 (573)
..+|||+|++.+++|.|||+..+.... ...|.+|+|+||.+|+..+..+.... ......+|++++.+ |
T Consensus 4 ~~~~DP~v~~~~~~g~yYl~~T~~~~~~~~~~~gi~v~~S~DLv~W~~~g~~~~~~~~~~~~~~~WAP~v~~~~--G--- 78 (291)
T cd08981 4 IRIRDPFILADPETGTYYLYGTTDPNIWGGEGTGFDVYKSKDLKDWEGPYPVFRPPDDFWADDNFWAPEVHEYK--G--- 78 (291)
T ss_pred ccccCCEEEEECCCCEEEEEEecCccccccCCCcEEEEECCChhcccccceeeccCCCcCccccccCCeeeeeC--C---
Confidence 358999988765689999998765311 12378999999999999875442221 12356789999886 5
Q ss_pred ccccCCCCCceeEEEEecC
Q 008242 255 LDTSDMGPNTKHVLKVSLD 273 (573)
Q Consensus 255 ~~~~~~~~~~~~vl~~s~~ 273 (573)
+|+|.++..
T Consensus 79 ----------~yyly~s~~ 87 (291)
T cd08981 79 ----------RYYMFATFH 87 (291)
T ss_pred ----------EEEEEEEec
Confidence 888887764
No 57
>cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended subs
Probab=98.10 E-value=4.9e-05 Score=78.02 Aligned_cols=78 Identities=19% Similarity=0.397 Sum_probs=56.4
Q ss_pred CCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecCCeeEEEEEEeCCCCCCEEcccccccCCCCCccccCceEE
Q 008242 167 KNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLAILYRSKDFVHWIKAKHPLHSVKGTGMWECPDFFP 246 (573)
Q Consensus 167 ~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~~~G~i~ly~S~Dl~~W~~~~~~~~~~~~~~~wEcPdlf~ 246 (573)
.||||.. .+.||.|++ .++.|||+.++.. ..+.|.+|+|+||.+|+..+..+ ....+++| +|+++.
T Consensus 7 ~nPv~~~---------~~~DP~i~~--~~~~yY~~~t~~~-~~~gi~i~~S~DL~~W~~~g~~~-~~~~~~~W-AP~i~~ 72 (280)
T cd09002 7 RNPILAG---------DYPDPSILR--DGEDYYMTHSSFK-YTPGLVIWHSRDLVNWTPVGPAL-PEYEGDVW-APDLCK 72 (280)
T ss_pred eCCccCC---------CCCCCEEEE--ECCEEEEEEcchh-cCCCEEEEECCCcCCceEccccc-cCCCCCEE-cCeeEE
Confidence 4899852 257999764 3679999765422 22348899999999999987533 22345688 799999
Q ss_pred eccCCCCCccccCCCCCceeEEEEecC
Q 008242 247 VSTYGLNGLDTSDMGPNTKHVLKVSLD 273 (573)
Q Consensus 247 l~~~g~~~~~~~~~~~~~~~vl~~s~~ 273 (573)
.+ | ||+|.++..
T Consensus 73 ~~--g-------------kyy~yys~~ 84 (280)
T cd09002 73 YD--G-------------RYYIYFPAI 84 (280)
T ss_pred EC--C-------------EEEEEEEee
Confidence 87 6 888888764
No 58
>cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with xylan-digesting beta-xylosidase (EC 3.2.1.37) and xylanase (endo-alpha-L-arabinanase) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=98.08 E-value=0.0002 Score=73.17 Aligned_cols=141 Identities=9% Similarity=0.048 Sum_probs=87.5
Q ss_pred ccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCC-ccee-cC-CCCCCCCCccCCceEeeeEEEcCCCceEEE
Q 008242 58 INDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLI-NWIP-HD-PAIYPSQQSDINGCWSGSATILPGEKPAIF 134 (573)
Q Consensus 58 ~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv-~W~~-~~-~al~P~~~~d~~gv~sGsav~~~dg~~~l~ 134 (573)
+.-| .+++++|+|+|||..+ ...++|+|+|.. .|+. .+ +.+.+.. ......+++++.++||+++|+
T Consensus 66 ~wAP-~v~~~~g~yy~yys~~--------~~i~va~s~~p~gp~~~~~~~p~~~~~~--~~~~~iDp~vf~d~dG~~yl~ 134 (275)
T cd09004 66 AWAP-SVIERNGKYYFYFSAN--------GGIGVAVADSPLGPFKDALGKPLIDKFT--FGAQPIDPDVFIDDDGQAYLY 134 (275)
T ss_pred cCCC-eEEEECCEEEEEEEcC--------CcEEEEEeCCCCCCCCCCCCCccccCCc--CCCCccCCCeEECCCCCEEEE
Confidence 4567 4788999999999864 358999999965 8887 33 3343321 123456788888778999999
Q ss_pred EcccCCCCceeEEE-EEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeec-C-CeeE
Q 008242 135 YTGIDPHNRQVQNL-AVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI-N-RKGL 211 (573)
Q Consensus 135 YTg~~~~~~~~q~l-A~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~-~-~~G~ 211 (573)
|.+.. ...+ ..+.|. .+|+.. ..++... . ...+.-|.+ ++ .+|+|||++++.. . ..-+
T Consensus 135 ~~~~~-----~~~i~~l~~d~-----~~~~~~--~~~~~~~--~---~~~~EgP~i-~k-~~G~yyl~ys~~~~~~~~Y~ 195 (275)
T cd09004 135 WGGWG-----HCNVAKLNEDM-----ISFDGE--RDGSEIT--P---KNYFEGPFM-FK-RNGIYYLMWSEGGWTDPDYH 195 (275)
T ss_pred EcCcC-----CEEEEEECCCc-----ccccCc--ceeeecc--C---CCceecceE-EE-ECCEEEEEEECCCCCCCCce
Confidence 97531 1222 344442 456532 1121111 1 123678985 45 5789999987753 1 1225
Q ss_pred EEEEEeCCCC-CCEEccc
Q 008242 212 AILYRSKDFV-HWIKAKH 228 (573)
Q Consensus 212 i~ly~S~Dl~-~W~~~~~ 228 (573)
+.+++|++.. -|+....
T Consensus 196 ~~ya~s~~~~GP~~~~~~ 213 (275)
T cd09004 196 VAYAMADSPLGPFERPGN 213 (275)
T ss_pred EEEEEcCCCCCCcccCCc
Confidence 7778888865 3776553
No 59
>cd08985 GH43_6 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=97.98 E-value=0.00054 Score=69.76 Aligned_cols=147 Identities=9% Similarity=0.068 Sum_probs=90.9
Q ss_pred CCccCCcceEEE--CCEEEEEeeeCCCCCCCCCcEEEEEEeCCCC-cceecCCCCCCCCCccCCceEeeeEEEcCCCceE
Q 008242 56 NWINDPNGVMIY--KGIYHLFYQYNPKGAVWGNIVWAHSTSKDLI-NWIPHDPAIYPSQQSDINGCWSGSATILPGEKPA 132 (573)
Q Consensus 56 gw~nDPng~~~~--~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv-~W~~~~~al~P~~~~d~~gv~sGsav~~~dg~~~ 132 (573)
+.+.-| -++|. +|+|||||...... .+..+.|+|+|++-. .|+.++..+ |. ......+++++++||+.+
T Consensus 63 ~~~waP-~v~y~~~~g~Y~m~~~~~~~~--~~~~~igvA~Sd~p~Gpf~~~~~~~-~~----~~~~~Dp~vf~DdDG~~Y 134 (265)
T cd08985 63 RIIERP-KVIYNAKTGKYVMWMHIDSSD--YSDARVGVATSDTPTGPYTYLGSFR-PL----GYQSRDFGLFVDDDGTAY 134 (265)
T ss_pred cEEECC-eEEEeCCCCEEEEEEEeCCCC--CcceeEEEEEeCCCCCCCEECCccC-CC----CCCccCCceEEcCCCCEE
Confidence 345566 35664 69999999987522 246789999999875 788776433 21 133567889998899999
Q ss_pred EEEcccCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecC-CeeE
Q 008242 133 IFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKIN-RKGL 211 (573)
Q Consensus 133 l~YTg~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~-~~G~ 211 (573)
|+|.+... ....++.-++. +..+. +.+..... ......|.+ ++ .+|.|||+.+.... ....
T Consensus 135 l~~~~~~~---~~i~i~~L~~d----~~~~~---~~~~~~~~------~~~~EaP~i-~K-~~g~YYL~~S~~t~~~~~~ 196 (265)
T cd08985 135 LLYSDRDN---SDLYIYRLTDD----YLSVT---GEVTTVFV------GAGREAPAI-FK-RNGKYYLLTSGLTGWNPND 196 (265)
T ss_pred EEEecCCC---CceEEEEeCCC----ccccc---ceEEEccC------CCccccceE-EE-ECCEEEEEEccCCCccCCc
Confidence 99986531 23444433221 13332 22322111 134678984 56 68999999876531 1224
Q ss_pred EEEEEeCCCC-CCEEccc
Q 008242 212 AILYRSKDFV-HWIKAKH 228 (573)
Q Consensus 212 i~ly~S~Dl~-~W~~~~~ 228 (573)
+..++|+++. -|+..+.
T Consensus 197 ~~y~~s~s~~GP~~~~~~ 214 (265)
T cd08985 197 ARYATATSILGPWTDLGN 214 (265)
T ss_pred eEEEEecCCCCCccccCc
Confidence 6678888874 5776654
No 60
>cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase. Glycosyl hydrolase family 68 (GH68) consists of frucosyltransferases (FTFs) that include levansucrase (EC 2.4.1.10), beta-fructofuranosidase (EC 3.2.1.26) and inulosucrase (EC 2.4.1.9), all of which use sucrose as their preferential donor substrate. Levansucrase, also known as beta-D-fructofuranosyl transferase, catalyzes the transfer of the sucrose fructosyl moiety to a growing levan chain. Similarly, inulosucrase catalyzes long inulin-type of fructans, and beta-fructofuranosidases create fructooligosaccharides (FOS). However, in the absence of high fructan/sucrose ratio, some GH68 enzymes can also use fructan as donor substrate. GH68 retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic n
Probab=97.95 E-value=0.00017 Score=75.72 Aligned_cols=148 Identities=16% Similarity=0.169 Sum_probs=93.2
Q ss_pred ECCEEEEEeeeCCCCC---CCCCcEEEEEEeCCCC----cceecCCCCCCCCC-cc-------------CCceEeeeEEE
Q 008242 67 YKGIYHLFYQYNPKGA---VWGNIVWAHSTSKDLI----NWIPHDPAIYPSQQ-SD-------------INGCWSGSATI 125 (573)
Q Consensus 67 ~~G~yHlfyq~~P~~~---~~g~~~Wgha~S~Dlv----~W~~~~~al~P~~~-~d-------------~~gv~sGsav~ 125 (573)
.+|+|||||..+-... ..-....++++++|+. .|+.+...+.+++. |+ ....=.+.++.
T Consensus 80 ~dg~~~lfYTg~~~~~~~~~~~~Q~ia~a~~~~~~v~~~~~~~~~~lf~~Dg~~Yqt~~q~~~~~~~~~~~~fRDP~vf~ 159 (349)
T cd08997 80 DDGTVQLFYTAVGRKGEPQPTFTQRLALARGTLSVVNLSGFEDHHELFEPDGDLYQTDQQYEGTGAQGDIKAFRDPFVFE 159 (349)
T ss_pred CCCeEEEEEeccccCCCCCCCceEEEEEEECCCcceEecccCccceeeeCCCceEEeccccccccccCccCcccCCEEEe
Confidence 4699999999874311 1124678999999984 55444445555542 21 12233566766
Q ss_pred cC-CCceEEEEcccCCCC---------------------------ceeEEEEEEcCCCCCccceeEecCCCccccCCCCC
Q 008242 126 LP-GEKPAIFYTGIDPHN---------------------------RQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMN 177 (573)
Q Consensus 126 ~~-dg~~~l~YTg~~~~~---------------------------~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~ 177 (573)
++ +|++||+++++.... .-.++||++++. .+.+|+-. .|++.+.
T Consensus 160 d~~~G~~ymvfeant~~~~g~~~~~~~~~~~~~~~~~~~~~a~~~~G~IGia~~~s~---dl~~W~~~--~PL~~a~--- 231 (349)
T cd08997 160 DPETGKTYLLFEGNTAGERGSQECTEAELGRVLPDTVKPDGASYQNGNVGIAVAKND---DLTEWKLL--PPLLEAN--- 231 (349)
T ss_pred cCCCCcEEEEEEeccCCCCCccccccccccccccccccccccccccceEEEEEecCC---CCCCcEEc--CccccCC---
Confidence 64 589999999876421 124567877642 25789875 5888654
Q ss_pred CCCCCCccCCeeEEecCCCeEEEEEeeecC-------CeeEEEEEEeCCCC-CCEE
Q 008242 178 QINTSSFRDPTTAWLGPDKRWRVIIGSKIN-------RKGLAILYRSKDFV-HWIK 225 (573)
Q Consensus 178 ~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~-------~~G~i~ly~S~Dl~-~W~~ 225 (573)
+. ...+.+|.++ + .+|+|||+..++.. +...+..|.|++|. .|+.
T Consensus 232 ~v-~d~~E~P~v~-~-~~gk~yL~~s~~~~~~~~~~~~~~~~~g~vsdsl~GP~~~ 284 (349)
T cd08997 232 GV-NDELERPHVV-F-HNGKYYLFTISHRSTFAPGLSGPDGLYGFVSDSLRGPYKP 284 (349)
T ss_pred Cc-CCceEcceEE-E-ECCEEEEEEeCCcCccccccCCCCcEEEEEeCCCCCCCcc
Confidence 11 2358899964 5 58999999875542 11235667888875 3554
No 61
>TIGR01322 scrB_fam sucrose-6-phosphate hydrolase.
Probab=97.94 E-value=9.7e-05 Score=80.88 Aligned_cols=135 Identities=10% Similarity=0.065 Sum_probs=82.6
Q ss_pred CCcceEEECCEEEEEeeeCCCCCCCC-CcEEEEEEeCCCCcceecC-CCCCCCCCccCCceEeeeEEEcCCCceEEEEcc
Q 008242 60 DPNGVMIYKGIYHLFYQYNPKGAVWG-NIVWAHSTSKDLINWIPHD-PAIYPSQQSDINGCWSGSATILPGEKPAIFYTG 137 (573)
Q Consensus 60 DPng~~~~~G~yHlfyq~~P~~~~~g-~~~Wgha~S~Dlv~W~~~~-~al~P~~~~d~~gv~sGsav~~~dg~~~l~YTg 137 (573)
.++ ++..+|++||||..+.....+. ...-++|+|+|+.+|+..+ ++|.+.......+.-.+.++. .+|+++|++.+
T Consensus 88 sGs-av~~~g~~~l~YTg~~~~~~~~~~~~q~lA~S~Dg~~~~k~~~pvi~~~~~~~~~~fRDP~V~~-~~g~~~M~~g~ 165 (445)
T TIGR01322 88 SGS-AVDNNGQLTLMYTGNVRDSDWNRESYQCLATMDDDGHFEKFGIVVIELPPAGYTAHFRDPKVWK-HNGHWYMVIGA 165 (445)
T ss_pred ECe-EEeeCCEEEEEEeccccCCCCCeeEEEEEEEcCCCCeEEECCCceEeCCCCCCcCcCCCCcEEe-ECCEEEEEEEE
Confidence 443 3457999999999865322222 2335689999999999986 456543221112334566655 58999999977
Q ss_pred cCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCC-CCCCCCccCCeeEEecCCCeEEEEEeee
Q 008242 138 IDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMN-QINTSSFRDPTTAWLGPDKRWRVIIGSK 205 (573)
Q Consensus 138 ~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~-~~~~~~~RDP~V~~~~~~g~~~m~~g~~ 205 (573)
..........+..|.| |++|+.. .++..+...+ +.....|.-|-+ +. -+++|+|+++..
T Consensus 166 ~~~~~~g~i~ly~S~D-----l~~W~~~--g~~~~~~~~~~~~~g~~~ECPdl-f~-l~~k~vL~~s~~ 225 (445)
T TIGR01322 166 QTETEKGSILLYRSKD-----LKNWTFV--GEILGDGQNGLDDRGYMWECPDL-FS-LDGQDVLLFSPQ 225 (445)
T ss_pred ecCCCceEEEEEECCC-----cccCeEe--cccccccccccCCccceEECCeE-EE-ECCcEEEEEecc
Confidence 5433323445666665 5899985 4555332000 111234788874 44 578999998754
No 62
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=97.92 E-value=7.8e-05 Score=76.13 Aligned_cols=149 Identities=12% Similarity=0.085 Sum_probs=91.4
Q ss_pred CcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCC-cceecCCCCCCCCCccCCceEeeeEEEcCCCceEEEEcccC
Q 008242 61 PNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLI-NWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIFYTGID 139 (573)
Q Consensus 61 Png~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv-~W~~~~~al~P~~~~d~~gv~sGsav~~~dg~~~l~YTg~~ 139 (573)
| .+++.+|+|||||..... -.....+.|+|++.. .|+.....+.+ ...+..+++++++||+.+|+|.+..
T Consensus 70 P-~i~~~~g~yy~y~~~~~~---~~~~~~~va~a~~~~Gp~~~~~~~~~~-----~~~~iD~~vf~d~dG~~Yl~~~~~~ 140 (286)
T PF04616_consen 70 P-EIHYINGKYYMYYSDSGG---DAGSGIGVATADSPDGPWTDPGKIPIP-----GGNSIDPSVFVDDDGKYYLYYGSWD 140 (286)
T ss_dssp E-EEEEETTEEEEEEEEEST---STTEEEEEEEESSTTS-EEEEEEEEEE-----SSSSSSEEEEEETTSEEEEEEEEST
T ss_pred C-eEEEcCCeEEEEEEccCC---CCCcceeEEEeCCcccccccccceeec-----cccccCceEEEecCCCcEEeCcccC
Confidence 5 367789999999992211 124568999999986 99987544333 2345678998887799999999865
Q ss_pred CC-CceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeec-CCeeEEEEEEe
Q 008242 140 PH-NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI-NRKGLAILYRS 217 (573)
Q Consensus 140 ~~-~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~-~~~G~i~ly~S 217 (573)
.. ..+.+.++...+.. .++.......+.... .........-|++ ++ .+|.|||++++.. ...=++.+++|
T Consensus 141 ~~~~~~~i~~~~l~~d~----~~~~~~~~~~~~~~~--~~~~~~~~Egp~~-~k-~~g~yYl~~s~~~~~~~y~v~~~~s 212 (286)
T PF04616_consen 141 NGDPGGGIYIAELDPDG----TSLTGEPVVVIFPGD--EGWDGGVVEGPFV-FK-HGGKYYLFYSAGGTGSPYQVGYARS 212 (286)
T ss_dssp TTSSEEEEEEEEEETTT----SSEEEEECEEEEEES--GSSTTTBEEEEEE-EE-ETTEEEEEEEESGSSTTTEEEEEEE
T ss_pred CCccceeEEeecccCcc----ccccCcccccccccc--cccCCccccceEE-EE-cCCCEEEEEeccCCCCCceEEEeec
Confidence 42 23444555443321 344432212222221 1222344677885 45 5889999998654 22235778999
Q ss_pred CCCCC-CEEc
Q 008242 218 KDFVH-WIKA 226 (573)
Q Consensus 218 ~Dl~~-W~~~ 226 (573)
+++.. |+..
T Consensus 213 ~~~~gp~~~~ 222 (286)
T PF04616_consen 213 DSPLGPWEWK 222 (286)
T ss_dssp SSTTSGGEET
T ss_pred cCCCCceeec
Confidence 99875 4544
No 63
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.0002 Score=72.42 Aligned_cols=103 Identities=14% Similarity=0.237 Sum_probs=79.1
Q ss_pred ceEeeeEEEcCCCceEEEEccc-----CCCCceeEEEEEEcCCCCCccce-eEecCCCccccC-CCCCCCCCCCccCCee
Q 008242 117 GCWSGSATILPGEKPAIFYTGI-----DPHNRQVQNLAVPKNLSDPYLRE-WVKSPKNPLMAP-DAMNQINTSSFRDPTT 189 (573)
Q Consensus 117 gv~sGsav~~~dg~~~l~YTg~-----~~~~~~~q~lA~s~d~~~~~l~~-w~k~~~nPvi~~-~~~~~~~~~~~RDP~V 189 (573)
++|.++++.. ++++.|+|-.. .........+|.|.|+ .+ |++. .+|++.| . ..++.....||-|
T Consensus 30 ~vFNpav~~~-~~~~~~l~Rv~~~yye~~~~~s~l~ia~s~dg-----i~~~~~e-~ep~~~P~~--~~~e~~G~EDPRv 100 (314)
T COG2152 30 SVFNPAVVLV-GGELLLLYRVVEGYYEDHSSISHLRIARSDDG-----IGEFEIE-PEPTLWPAN--YPYEIYGIEDPRV 100 (314)
T ss_pred EEecceeEEE-CCEEEEEEEEeccccccCccceEEEEEecccC-----CCceecC-CcceEecCC--CchhhhcccCceE
Confidence 7899998875 89999988772 2235567889999986 45 9987 4799876 3 3445677899997
Q ss_pred EEecCCCeEEEEEeeecCCeeEEEEEEeCCCCCCEEccccc
Q 008242 190 AWLGPDKRWRVIIGSKINRKGLAILYRSKDFVHWIKAKHPL 230 (573)
Q Consensus 190 ~~~~~~g~~~m~~g~~~~~~G~i~ly~S~Dl~~W~~~~~~~ 230 (573)
+. .+++|+|.+.+..+...++.+..+.|+++|++.+..+
T Consensus 101 t~--I~~~y~mtYTa~s~~g~~~~la~t~~f~n~~rig~i~ 139 (314)
T COG2152 101 TK--IGGRYYMTYTAYSDKGPRLALAVTKDFLNWERIGAIF 139 (314)
T ss_pred EE--ECCEEEEEEEecCCCCcccchhhhhhhhhhhhccccc
Confidence 54 5799999999976555567889999999999987543
No 64
>cd09003 GH43_AXH_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), xylanase (endo-alpha-L-arabinanase) as well as arabinoxylan arabinofuranohydrolase (AXH) activities. These are all inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. AXHs specifically hydrolyze the glycosidic bond between arabinofuranosyl substituents and xylopyranosyl backbone residues of arabinoxylan. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose
Probab=97.75 E-value=0.002 Score=67.26 Aligned_cols=150 Identities=11% Similarity=0.086 Sum_probs=87.2
Q ss_pred ccCCcceEEEC----CEEEEEeeeCCCCCCCCCcEEEEEEeCCCC-cceec-CC-CCCCCCC-cc-CCceEeeeEEEcCC
Q 008242 58 INDPNGVMIYK----GIYHLFYQYNPKGAVWGNIVWAHSTSKDLI-NWIPH-DP-AIYPSQQ-SD-INGCWSGSATILPG 128 (573)
Q Consensus 58 ~nDPng~~~~~----G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv-~W~~~-~~-al~P~~~-~d-~~gv~sGsav~~~d 128 (573)
+.-| .+++.+ |+|+|||... ....+.|+|++.. .|++. +. .+.+... .+ ......+++++++|
T Consensus 78 ~WAP-~v~~~~~~~~gkyylyy~~~-------~~~igva~SdsP~GP~~~~~g~~l~~~~~~~~~~~~~~iDp~~f~DdD 149 (311)
T cd09003 78 SWAP-SIAVKKINGKGKFYLYFANG-------GGGIGVLTADSPVGPWTDPLGKPLITGSTPGCAGVVWLFDPAVFVDDD 149 (311)
T ss_pred cCCC-ceEEeccCCCCEEEEEEecC-------CCeEEEEEcCCCCCCcccCCCCeeecCCCCCccCCccccCCCeEECCC
Confidence 3457 467777 9999999632 2458999999965 89975 32 2222111 11 11246788888889
Q ss_pred CceEEEEcccCC----CCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEee
Q 008242 129 EKPAIFYTGIDP----HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGS 204 (573)
Q Consensus 129 g~~~l~YTg~~~----~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~ 204 (573)
|+.||+|.+... ...+.+.+|.-.+. +.+ ..+.++.-.. + ..+.-|.+ ++ .+|.|||++++
T Consensus 150 G~~Yl~~g~~~~~~~~~~~~~i~i~~l~~D----~~~---~~g~~~~i~~--~----~~~Egp~~-~K-~~G~YYL~ys~ 214 (311)
T cd09003 150 GQGYLYFGGGVPGGRWANPNTARVIKLGDD----MIS---VDGSAVTIDA--P----YFFEASGL-HK-INGTYYYSYCT 214 (311)
T ss_pred CCEEEEECCccCCCccccCCCEEEEEeCCC----cee---ccCCceEccC--C----CceEeeeE-EE-ECCEEEEEEeC
Confidence 999999975332 11123444533321 122 2222332111 1 23678885 45 68999998875
Q ss_pred ec-------CCeeEEEEEEeCCCC-CCEEccccc
Q 008242 205 KI-------NRKGLAILYRSKDFV-HWIKAKHPL 230 (573)
Q Consensus 205 ~~-------~~~G~i~ly~S~Dl~-~W~~~~~~~ 230 (573)
.- ....++.+++|++.. -|+..+.++
T Consensus 215 ~~~~~~~~~~~~y~v~y~~s~~~~GP~~~~g~il 248 (311)
T cd09003 215 NFGGRDPGKPPPGRIAYMTSKNPMGPFTYKGIIL 248 (311)
T ss_pred CCCccCCCCCCceeEEEEEcCCCCCCcccCCEec
Confidence 41 223467777887754 487655433
No 65
>smart00640 Glyco_32 Glycosyl hydrolases family 32.
Probab=97.70 E-value=0.00023 Score=77.69 Aligned_cols=131 Identities=12% Similarity=0.115 Sum_probs=81.0
Q ss_pred eEEECCEEEEEeeeCC-CCC--CCCC-cEEEEEEeCCCCcceec--CCCCCCCCCccCCceEeeeEEEcCCCceEEEEcc
Q 008242 64 VMIYKGIYHLFYQYNP-KGA--VWGN-IVWAHSTSKDLINWIPH--DPAIYPSQQSDINGCWSGSATILPGEKPAIFYTG 137 (573)
Q Consensus 64 ~~~~~G~yHlfyq~~P-~~~--~~g~-~~Wgha~S~Dlv~W~~~--~~al~P~~~~d~~gv~sGsav~~~dg~~~l~YTg 137 (573)
++.++|+|||||..+- ... .... ..-.+|+|+|+.||+.. .++|.+...+.....-.+.++..++|+++|++.+
T Consensus 74 av~~~~~~~~~YTg~~~~~~~~~~~~~~~~~~ass~d~~~w~k~~~~Pvi~~~p~~~~~~fRDP~Vf~~~~~~~~m~~g~ 153 (437)
T smart00640 74 AVIDPGNLSLLYTGNVAIDTNVQVQRQAQQLAASDDLGGTWTKYPGNPVLVPPPGIGTEHFRDPKVFWYDGDKWYMVIGA 153 (437)
T ss_pred EEECCCceEEEEcCCcccccccCcccEEEEEEEECCCCCeeEECCCCcEEeCCCCCCCCCcCCCCccEECCCEEEEEEEE
Confidence 4456888999998763 211 1222 22367889999999998 3556543322222334566665434689999987
Q ss_pred cCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCC-----eEEEEEeee
Q 008242 138 IDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDK-----RWRVIIGSK 205 (573)
Q Consensus 138 ~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g-----~~~m~~g~~ 205 (573)
...+..-.+.++.|+| |++|+.. .+++.+. .+.....|..|-.+ . -++ +|+|+++.+
T Consensus 154 ~~~~~~G~i~ly~S~D-----l~~W~~~--~~~~~~~--~~~~g~~wECPdlf-~-l~~~~~~~~~vLi~s~~ 215 (437)
T smart00640 154 SDEDKTGIALLYRSTD-----LKNWTLL--GELLHSG--VGDTGGMWECPDLF-P-LPGDGDTSKHVLKVSPQ 215 (437)
T ss_pred EecCCCeEEEEEECCC-----cccCeEC--CcccccC--CCCccceEECCcEE-E-eCCCCCceeEEEEECcC
Confidence 6544445577777776 5899875 4565431 11112457888743 3 344 899998875
No 66
>cd08988 GH43_ABN Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes with alpha-L-arabinofuranosidase (AFN; EC 3.2.1.55) and endo-alpha-L-arabinanase (ABN; EC 3.2.1.99) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. The GH43 ABN enzymes hydrolyze alpha-1,5-L-arabinofuranoside linkages while the ABF enzymes cleave arabinose side chains so that the combined actions of these two enzymes reduce arabinan to L-arabinose and/or arabinooligosaccharides. These arabinan-degrading enzymes are important in the food industry for efficient production of L-arabinose from agricultural waste; L-arabinose is often used as a bioactive sweetener. A common structural feature of GH43 enzymes is a 5-bla
Probab=97.64 E-value=0.0016 Score=66.73 Aligned_cols=147 Identities=10% Similarity=0.163 Sum_probs=84.9
Q ss_pred CccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCC-c-----ceecCCCCCCCCCccCCceEeeeEEEcCCCc
Q 008242 57 WINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLI-N-----WIPHDPAIYPSQQSDINGCWSGSATILPGEK 130 (573)
Q Consensus 57 w~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv-~-----W~~~~~al~P~~~~d~~gv~sGsav~~~dg~ 130 (573)
-++-| .+++++|+|||||.....+. ....+|.|+|++.. . |+..++++.+... .......+++++++||+
T Consensus 56 ~~WAP-~v~~~~G~yylyys~~~~~~--~~~~igva~s~~p~Gp~~~~~w~~~~~i~~~~~~-~~~~~iDp~~f~DdDG~ 131 (279)
T cd08988 56 HLWAP-DIYQHNGKFYLYYSVSAFGS--NTSAIGLAVNKTIDGPSPDYGWEKGGVVISSDAS-DNYNAIDPAIIFDQHGQ 131 (279)
T ss_pred CEecc-eEEEECCEEEEEEEeccCCC--CCceEEEEEcCCCCCCCcCcCccccCceEecCCC-CCCCccCCceEEcCCCC
Confidence 35677 47889999999998765432 24578999999864 3 5443333333322 12345788999988899
Q ss_pred eEEEEcccCCCCceeEEEEEEcCCCCCccceeEec-CCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeec---
Q 008242 131 PAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKS-PKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI--- 206 (573)
Q Consensus 131 ~~l~YTg~~~~~~~~q~lA~s~d~~~~~l~~w~k~-~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~--- 206 (573)
++|+|.+.. .+ ....-.+.|... .... ....++..+ . +.....-|++ ++ .+|.|||+.+...
T Consensus 132 ~Yl~~g~~~-~g--i~~~eL~~d~~~-----~~~~~~~~~i~~~~--~--~~~~~Egp~i-~k-~~g~YYl~~S~g~~~~ 197 (279)
T cd08988 132 PWLSFGSFW-GG--IKLFELDKDTMK-----PAEPGELHSIAGRE--R--SSAAIEAPFI-LY-RGDYYYLFVSFGLCCR 197 (279)
T ss_pred EEEEecccC-CC--EEEEEECcccCC-----ccCCCcceEEeccC--C--CCCceEeeEE-EE-cCCeEEEEEEcCcccC
Confidence 999996532 11 122233333211 1000 001122221 1 1123578885 55 5899999886532
Q ss_pred --CCeeEEEEEEeCCCC
Q 008242 207 --NRKGLAILYRSKDFV 221 (573)
Q Consensus 207 --~~~G~i~ly~S~Dl~ 221 (573)
...-++.+++|+++.
T Consensus 198 ~~~~~y~v~~arS~~~~ 214 (279)
T cd08988 198 GGDSTYKIAVGRSKNIT 214 (279)
T ss_pred CCCCCeEEEEEEeCCCC
Confidence 122357889998874
No 67
>COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=97.61 E-value=0.00087 Score=72.99 Aligned_cols=163 Identities=22% Similarity=0.302 Sum_probs=91.3
Q ss_pred cCCcceEEECCEEEEEee---eCCCCCCCCCcEEEEEEeCCCCcceecCCCCCCCCC-------ccCCceEeeeEEEcCC
Q 008242 59 NDPNGVMIYKGIYHLFYQ---YNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQ-------SDINGCWSGSATILPG 128 (573)
Q Consensus 59 nDPng~~~~~G~yHlfyq---~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~-------~d~~gv~sGsav~~~d 128 (573)
-|| -++..+.-|+|=.. +.|. -.-+.|+||+||+.+.-.|.+... -+..|||.+++. .+|
T Consensus 31 PDp-Si~rvg~dyYia~stF~~fpG--------l~i~hS~DL~nW~~v~tpl~~~~~ld~kgn~~~S~giWAPdl~-y~d 100 (549)
T COG3507 31 PDP-SIVRVGDDYYIATSTFEWFPG--------LAIHHSRDLVNWTLVSTPLIRTSQLDLKGNFPYSGGIWAPDLS-YHD 100 (549)
T ss_pred CCC-ceEecCCceEEEcceEEEcCc--------eeeeccccccCcEEecccccCcchhhhhcccCCCCceecccee-cCC
Confidence 466 35555555655322 2231 334679999999999876666532 245789999987 589
Q ss_pred CceEEEEcccCCCC---ceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeee
Q 008242 129 EKPAIFYTGIDPHN---RQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSK 205 (573)
Q Consensus 129 g~~~l~YTg~~~~~---~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~ 205 (573)
|+++|+||...... .......++....+ -.|.. |+.-+. ..--||.++ ++++|+-||+.+..
T Consensus 101 Gkfwl~ytdvk~~~g~~k~~~nyl~t~~s~~---G~WsD----pi~l~~-------~~~iDPslf-~D~dGr~wlv~~~w 165 (549)
T COG3507 101 GKFWLYYTDVKRSGGPYKNAGNYLVTAESID---GPWSD----PIKLNG-------SNAIDPSLF-FDKDGRKWLVNGSW 165 (549)
T ss_pred CcEEEEEecccccCCcccccccEEEEecCCC---CCccc----ceecCC-------cCccCCcee-ecCCCCEEEEeccc
Confidence 99999998765422 11122233322211 34652 343221 124599965 55889999998876
Q ss_pred cCC-----eeEEEE-EEeC---CCCCCEEcccccccCCCCCccccCceEEec
Q 008242 206 INR-----KGLAIL-YRSK---DFVHWIKAKHPLHSVKGTGMWECPDFFPVS 248 (573)
Q Consensus 206 ~~~-----~G~i~l-y~S~---Dl~~W~~~~~~~~~~~~~~~wEcPdlf~l~ 248 (573)
... .+.|.| ..++ .|..+.+ + .++.+......|-|-+++.+
T Consensus 166 ~~~~~~~~~~~i~l~~~~~~~~~l~g~~~-~-~~~~G~~~~~~EGPhl~k~~ 215 (549)
T COG3507 166 DGGIFMHSFAGIILQEYDKTTQKLVGQGY-K-IIFDGGNGGLTEGPHLYKKT 215 (549)
T ss_pred CCCcccccccceeeeeccccccccCCccc-e-eEeccCCCccccCceeeccC
Confidence 422 122222 2221 1223322 1 12233334578999888886
No 68
>cd08980 GH43_1 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-xylosidase (EC 3.2.1.37) and alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly bifunctional xylosidase/arabinofuranosidase activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.
Probab=97.59 E-value=0.0032 Score=64.76 Aligned_cols=157 Identities=11% Similarity=0.112 Sum_probs=84.6
Q ss_pred CccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCC----CCcceecCCCCCCCCCccCCceEeeeEEEcCCCceE
Q 008242 57 WINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKD----LINWIPHDPAIYPSQQSDINGCWSGSATILPGEKPA 132 (573)
Q Consensus 57 w~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~D----lv~W~~~~~al~P~~~~d~~gv~sGsav~~~dg~~~ 132 (573)
-+.-| .+.+++|+|||||...-.+ .......+.++|++ +-.|+..+.++.+.+ .....++++.+ +|+++
T Consensus 54 ~~WAP-~i~~~~g~yylyys~~~~~-~~~~~~~~v~~a~~~~~~~Gpw~~~~~~~~~~~----~~~iDp~~~~d-dG~~Y 126 (288)
T cd08980 54 NLWAP-ELHYIDGKWYIYFAAGDGG-GNANHRMYVLENAGADPPTGPWTFKGRLADPTD----RWAIDGTVFEH-NGQLY 126 (288)
T ss_pred cEECc-eEEEECCEEEEEEEccCCC-CCcceeEEEEEeCCCCCCCCCceEeeEeccCCC----CeeeeeEEEEE-CCEEE
Confidence 34556 3677899999999865432 11234456666664 568999765442221 23567888876 79999
Q ss_pred EEEcccCC--CCceeEEEEEEcCCCCCccceeEecCCCcc-ccCCCCCCCCC---CCccCCeeEEecCCCeEEEEEeeec
Q 008242 133 IFYTGIDP--HNRQVQNLAVPKNLSDPYLREWVKSPKNPL-MAPDAMNQINT---SSFRDPTTAWLGPDKRWRVIIGSKI 206 (573)
Q Consensus 133 l~YTg~~~--~~~~~q~lA~s~d~~~~~l~~w~k~~~nPv-i~~~~~~~~~~---~~~RDP~V~~~~~~g~~~m~~g~~~ 206 (573)
|+|.+... ...+...++...+. .++. +.++ +..+. ..++. ....-|+++ + .+|.|||++++..
T Consensus 127 l~~~~~~~~~~~~~~i~~~~l~~~-----~~~~---g~~~~i~~p~-~~we~~~~~~~EgP~~~-k-~~G~yYl~yS~~~ 195 (288)
T cd08980 127 FVWSGWEGRTNGNQNLYIAKMSNP-----WTLT---GPRVLISRPE-YDWERQGPGVNEGPAAL-K-RNGKVFLTYSASG 195 (288)
T ss_pred EEEEccCCCCCCCccEEEEECCCC-----CccC---CcceEecCCC-CCceecCceeeECcEEE-E-ECCEEEEEEECCC
Confidence 99986542 12223344433332 2232 1222 22221 12211 224678854 4 4699999998753
Q ss_pred C-Cee-EEEEEEeC---C-C--CCCEEcccccc
Q 008242 207 N-RKG-LAILYRSK---D-F--VHWIKAKHPLH 231 (573)
Q Consensus 207 ~-~~G-~i~ly~S~---D-l--~~W~~~~~~~~ 231 (573)
- ... ++.+++|+ + + ..|+..+.++.
T Consensus 196 ~~~~~Y~v~~a~~~~~~~~~~~~~~~~~~~pil 228 (288)
T cd08980 196 SWTPDYCLGLLTADGGADLLDPASWTKSPTPVF 228 (288)
T ss_pred CCCCCCEEEEEEEcCCCCCCChhhCcCCCCCce
Confidence 1 111 34555553 2 2 13765544443
No 69
>cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=97.57 E-value=0.0019 Score=65.86 Aligned_cols=134 Identities=12% Similarity=0.053 Sum_probs=81.6
Q ss_pred ccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCC-cceecCCCCCCCCCccCCceEeeeEEEcCCCceEEEEc
Q 008242 58 INDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLI-NWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIFYT 136 (573)
Q Consensus 58 ~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv-~W~~~~~al~P~~~~d~~gv~sGsav~~~dg~~~l~YT 136 (573)
+.-| .+++.+|+|||||..+. .+.+.|+|++.. .|+..+... ....+++++++||+.+|+|.
T Consensus 76 ~WAP-~v~~~~gkyy~yys~~~-------~~~~v~~a~~p~Gpw~~~~~~~---------~~iDp~~f~D~dG~~Yl~~~ 138 (269)
T cd09001 76 QWAP-SLRYHNGTFYVFFCTNT-------GGTYIYTADDPEGPWTKTALDG---------GYHDPSLLFDDDGTAYLVYG 138 (269)
T ss_pred EECC-ceEEECCEEEEEEEecC-------CCeEEEEcCCCCCCCcCCCcCC---------CcccCceEEcCCCCEEEEeC
Confidence 5577 57888999999998751 135677777753 787765322 23567888888999999996
Q ss_pred ccCCCCceeEEEE-EEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecCCeeEEEEE
Q 008242 137 GIDPHNRQVQNLA-VPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLAILY 215 (573)
Q Consensus 137 g~~~~~~~~q~lA-~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~~~G~i~ly 215 (573)
+. .+.++ ++.|. ..... +...++..+ .. ......-|++ ++ .+|.|||++++.......+.++
T Consensus 139 ~~------~i~~~~l~~d~-----~~~~~-~~~~~~~~~--~~-~~~~~Egp~i-~k-~~G~YYl~~S~~~~~~~~~~~~ 201 (269)
T cd09001 139 GG------TIRLVELSPDL-----TGVGG-KDQVIIDAG--EE-IGLGAEGSHL-YK-INGYYYIFNIAWGGGGRTQTCL 201 (269)
T ss_pred CC------cEEEEEECccc-----CCcCC-CceEEEeCC--Cc-cccccccCeE-EE-ECCEEEEEEecCCCCCceEEEE
Confidence 53 23333 33332 22211 112333333 10 1234678885 45 6899999988753222356688
Q ss_pred EeCCCCC-CEE
Q 008242 216 RSKDFVH-WIK 225 (573)
Q Consensus 216 ~S~Dl~~-W~~ 225 (573)
+|+++.. |+.
T Consensus 202 ~s~~~~GP~~~ 212 (269)
T cd09001 202 RSKSLTGPYES 212 (269)
T ss_pred EeCCCCCCcCC
Confidence 9988653 544
No 70
>cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase. This glycosyl hydrolase family 43 (GH43) includes mostly enzymes that have been characterized to have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extend
Probab=97.34 E-value=0.0061 Score=62.67 Aligned_cols=147 Identities=14% Similarity=0.008 Sum_probs=87.1
Q ss_pred CCCCccCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCC-CcceecCCCCCCCCCccCCceEeeeEEEcCCCceE
Q 008242 54 PKNWINDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDL-INWIPHDPAIYPSQQSDINGCWSGSATILPGEKPA 132 (573)
Q Consensus 54 ~~gw~nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dl-v~W~~~~~al~P~~~~d~~gv~sGsav~~~dg~~~ 132 (573)
..+-++-| -+++.+|+|||||...... +....+.++|+|. -.|++. . +.+. .+..++++.++||+++
T Consensus 64 ~~~~~WAP-~v~~~~g~yy~yy~~~~~~---~~~~~~v~~s~~p~gpw~~~-~-~~~~------~~iDp~vf~d~dG~~Y 131 (288)
T cd09000 64 DSGGIWAP-TIRYHDGTFYLITTNVDGM---KDGGNFIVTADDPAGPWSDP-V-WLDS------GGIDPSLFFDDDGKVY 131 (288)
T ss_pred CCCceEcc-eEEEECCEEEEEEEecCCC---CCCceEEEEeCCCCCCCcCC-E-ecCC------CccCCceeEcCCCCEE
Confidence 34445668 4788999999999876532 2345678889887 378742 1 2221 4567888887789999
Q ss_pred EEEcccCCC----CceeEEEEEEcCCCCCccceeEecCCCc--cccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeec
Q 008242 133 IFYTGIDPH----NRQVQNLAVPKNLSDPYLREWVKSPKNP--LMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI 206 (573)
Q Consensus 133 l~YTg~~~~----~~~~q~lA~s~d~~~~~l~~w~k~~~nP--vi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~ 206 (573)
|+|...... +...+.++-... ..++-. ..| +.... ......-|.| ++ .+|.|||++....
T Consensus 132 ~~~~~~~~~~~~~~~~~i~~~~l~~------~~~~~~-~~~~~~~~~~-----~~~~~Egp~v-~k-~~g~YYl~ys~~~ 197 (288)
T cd09000 132 LVGNGWDERRGYNGHGGIWLQEIDL------ETGKLL-GEPKVIWNGT-----GGRWPEGPHL-YK-RDGWYYLLIAEGG 197 (288)
T ss_pred EEecccCCccccCCCCcEEEEEEcc------ccCCCC-CCcEEEEeCC-----CCCCcccCeE-EE-ECCEEEEEEecCC
Confidence 988654321 122344443322 112211 122 22111 1123568885 45 5899999986542
Q ss_pred -CCeeEEEEEEeCCCC-CCEEc
Q 008242 207 -NRKGLAILYRSKDFV-HWIKA 226 (573)
Q Consensus 207 -~~~G~i~ly~S~Dl~-~W~~~ 226 (573)
...-++.+++|+++. -|+..
T Consensus 198 ~~~~~~v~~~~s~~~~Gp~~~~ 219 (288)
T cd09000 198 TGYGHSVTVARSRSITGPYEPA 219 (288)
T ss_pred CCCCeEEEEEEeCCCCCCCccC
Confidence 222367889999886 67654
No 71
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=97.24 E-value=0.01 Score=62.62 Aligned_cols=164 Identities=16% Similarity=0.229 Sum_probs=99.8
Q ss_pred CCCCccceecCCC---CCccCCcceEEEC-CEEEEEeeeCCCCC-------CCCCcEEEEEEeCCC-CcceecCCCCCCC
Q 008242 43 QPYRTGYHFQPPK---NWINDPNGVMIYK-GIYHLFYQYNPKGA-------VWGNIVWAHSTSKDL-INWIPHDPAIYPS 110 (573)
Q Consensus 43 ~~~RP~~H~~p~~---gw~nDPng~~~~~-G~yHlfyq~~P~~~-------~~g~~~Wgha~S~Dl-v~W~~~~~al~P~ 110 (573)
..|.+.--+.... ..+.||. ++... |+-+|||...+... .+...+..+..|+|. .+|.. |..|.+.
T Consensus 58 ~tW~~~~~i~~~~~~~~~~~~p~-~v~~~~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~-p~~l~~~ 135 (351)
T cd00260 58 KTWSPSTVISDGDGKSSRVKDPT-VVVDGLGRVFLLVGSFPNGEGEDNDYAGPSNAYLVLVYSDDDGITWSS-PRDLTPS 135 (351)
T ss_pred CcccccEEehhcCCCCCcEEcce-EEEcCCCCEEEEEEECCCcccccccccCCCceEEEEEEEEcCCceecC-CccCCcc
Confidence 4566654444332 3567894 66676 99999998887642 223556778889886 89986 3334333
Q ss_pred C---CccCCceE--eeeEEEcCCCceEEEEcccCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCcc
Q 008242 111 Q---QSDINGCW--SGSATILPGEKPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFR 185 (573)
Q Consensus 111 ~---~~d~~gv~--sGsav~~~dg~~~l~YTg~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~R 185 (573)
. .+. ..+ .|+.++..+|++++.+.+....+.....+.+|.|+| ++|+... +. .. .....
T Consensus 136 ~~~~~~~--~~~~~~g~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G----~tW~~~~--~~-~~-------~~~~~ 199 (351)
T cd00260 136 VKGDNWA--ALFTGPGSGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSG----KTWKLGE--GV-ND-------AGGCS 199 (351)
T ss_pred ccCccee--EEEecCcCeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCC----CCcEECC--CC-CC-------CCCCc
Confidence 2 222 222 234455567988765544333344566778888875 8997632 11 11 02235
Q ss_pred CCeeEEecCCCeEEEEEeeecCCeeEEEEEEeCC-CCCCEEcc
Q 008242 186 DPTTAWLGPDKRWRVIIGSKINRKGLAILYRSKD-FVHWIKAK 227 (573)
Q Consensus 186 DP~V~~~~~~g~~~m~~g~~~~~~G~i~ly~S~D-l~~W~~~~ 227 (573)
.|.|+-. .+|+.+|+..... .+.+.++.|.| +..|+...
T Consensus 200 e~~i~el-~dG~l~~~~R~~~--~~~~~~~~S~D~G~tWs~~~ 239 (351)
T cd00260 200 ECSVVEL-SDGKLYMYTRDNS--GGRRPVYESRDMGTTWTEAL 239 (351)
T ss_pred CCEEEEe-cCCEEEEEEeeCC--CCcEEEEEEcCCCcCcccCc
Confidence 6776544 5788888776642 45667888877 58999643
No 72
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=97.10 E-value=0.0036 Score=63.44 Aligned_cols=149 Identities=19% Similarity=0.304 Sum_probs=89.5
Q ss_pred CccCCcceEE-ECCEEEEEeeeCCCCCCCCCcEEEEEEeCC-CCcceecCCCCCCCCCccCCceEeeeEEEcCCCceEEE
Q 008242 57 WINDPNGVMI-YKGIYHLFYQYNPKGAVWGNIVWAHSTSKD-LINWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIF 134 (573)
Q Consensus 57 w~nDPng~~~-~~G~yHlfyq~~P~~~~~g~~~Wgha~S~D-lv~W~~~~~al~P~~~~d~~gv~sGsav~~~dg~~~l~ 134 (573)
=..||. +++ .+|+.||||........|......+.+|+| +.+|+... .|.+.......+...+.++...+|++++-
T Consensus 47 ~~~~p~-~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~-~l~~~~~~~~~~~~~~~~i~~~~G~l~~~ 124 (275)
T PF13088_consen 47 RYGNPS-LVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPT-DLPPGWFGNFSGPGRGPPIQLPDGRLIAP 124 (275)
T ss_dssp EEEEEE-EEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEE-EEHHHCCCSCEECSEEEEEEECTTEEEEE
T ss_pred cccCcE-EEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCcc-ccccccccceeccceeeeeEecCCCEEEE
Confidence 356784 454 499999999666555445455555699999 79999864 23222112223444554455568887664
Q ss_pred -EcccCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecCCeeEEE
Q 008242 135 -YTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLAI 213 (573)
Q Consensus 135 -YTg~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~~~G~i~ 213 (573)
|.. ........+.+|.|++ ++|+... ++. . ....--|.++.. .+|+.+|++... . .+.+.
T Consensus 125 ~~~~--~~~~~~~~~~~S~D~G----~tW~~~~--~~~--~------~~~~~e~~~~~~-~dG~l~~~~R~~-~-~~~~~ 185 (275)
T PF13088_consen 125 YYHE--SGGSFSAFVYYSDDGG----KTWSSGS--PIP--D------GQGECEPSIVEL-PDGRLLAVFRTE-G-NDDIY 185 (275)
T ss_dssp EEEE--SSCEEEEEEEEESSTT----SSEEEEE--ECE--C------SEEEEEEEEEEE-TTSEEEEEEEEC-S-STEEE
T ss_pred Eeec--cccCcceEEEEeCCCC----ceeeccc--ccc--c------cCCcceeEEEEC-CCCcEEEEEEcc-C-CCcEE
Confidence 443 1233566778899875 8998752 221 1 012335554433 678888887663 2 22677
Q ss_pred EEEeCC-CCCCEEc
Q 008242 214 LYRSKD-FVHWIKA 226 (573)
Q Consensus 214 ly~S~D-l~~W~~~ 226 (573)
+++|.| +.+|+..
T Consensus 186 ~~~S~D~G~TWs~~ 199 (275)
T PF13088_consen 186 ISRSTDGGRTWSPP 199 (275)
T ss_dssp EEEESSTTSS-EEE
T ss_pred EEEECCCCCcCCCc
Confidence 888877 7999973
No 73
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process
Probab=97.09 E-value=0.035 Score=54.67 Aligned_cols=183 Identities=16% Similarity=0.255 Sum_probs=99.4
Q ss_pred cCCCCCc--cCCcceEEECCEEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceecCCCCCCCCCccCCceEeeeEEE-cCC
Q 008242 52 QPPKNWI--NDPNGVMIYKGIYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPHDPAIYPSQQSDINGCWSGSATI-LPG 128 (573)
Q Consensus 52 ~p~~gw~--nDPng~~~~~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~~~al~P~~~~d~~gv~sGsav~-~~d 128 (573)
.|..||. .|| .+|+++|+||+|....-.+..||-| .=.-+-+|.+...|=.-. -+. +.-.+.++. .+.
T Consensus 17 ~Pk~g~~slKD~-T~V~ynGk~~VyAtt~d~~~~y~sm-----~f~~Ftdws~~~sA~q~~--m~~-~~vAP~vFYFaPk 87 (271)
T PF03664_consen 17 QPKSGWVSLKDF-TIVPYNGKHHVYATTADTGGGYGSM-----NFGPFTDWSQMASASQNY--MDQ-SAVAPQVFYFAPK 87 (271)
T ss_pred cCCCCceeccCc-eEEeECCEEEEEEEeccCCCccceE-----eeeccCCHHHhhcccccc--CCc-ccccceEEEecCC
Confidence 4677885 699 6899999999999876444444433 333456787765432111 111 111222222 256
Q ss_pred CceEEEEcccCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecCC
Q 008242 129 EKPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINR 208 (573)
Q Consensus 129 g~~~l~YTg~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~~ 208 (573)
+.++|.|.-.. ..-...++.|.+++ -.|... .|++.... .+ .....-|..|+.+ +..-||+.+..
T Consensus 88 ~~W~L~yQwg~----~~fsY~Ts~Dptnp--ngWSap--q~lf~g~i-~~-~~~g~iD~~vI~D--~~n~yLFfa~D--- 152 (271)
T PF03664_consen 88 NIWYLAYQWGP----AAFSYSTSSDPTNP--NGWSAP--QPLFSGSI-SG-SGTGPIDQWVICD--DTNMYLFFAGD--- 152 (271)
T ss_pred cEEEEEEecCC----CcceeecCCCCCCC--ccCCCC--cccccccc-cC-CCCCceeeEEEec--CCceEEEEcCC---
Confidence 77888886322 11123455666666 468763 56753220 11 1234679988754 33455555432
Q ss_pred eeEEEEEEeCC-CCCC----EEcccccccCCCCCccccCceEEeccCCCCCccccCCCCCceeEEEEecC
Q 008242 209 KGLAILYRSKD-FVHW----IKAKHPLHSVKGTGMWECPDFFPVSTYGLNGLDTSDMGPNTKHVLKVSLD 273 (573)
Q Consensus 209 ~G~i~ly~S~D-l~~W----~~~~~~~~~~~~~~~wEcPdlf~l~~~g~~~~~~~~~~~~~~~vl~~s~~ 273 (573)
.|. ||||.- +-+. .-....+.+......+|.++++++. |. .++.|++...
T Consensus 153 nGk--iYRs~~~i~nFP~~fgs~~~vvmsd~~~nLFEA~~VYkv~--G~-----------~~YLmiVEai 207 (271)
T PF03664_consen 153 NGK--IYRSSMPIGNFPGGFGSSYTVVMSDTRNNLFEAVQVYKVK--GQ-----------NQYLMIVEAI 207 (271)
T ss_pred CCc--EEEeccchhhCCCCCCCceEEEEecCccceeeeeEEEEEc--CC-----------ceEEEEEEEe
Confidence 354 788743 2121 1011122222234579999999997 52 2777777654
No 74
>cd08982 GH43_3 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=96.58 E-value=0.027 Score=58.26 Aligned_cols=80 Identities=11% Similarity=0.074 Sum_probs=48.8
Q ss_pred ceEeeeEEEcCCCceEEEEcccCCC-CceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCC
Q 008242 117 GCWSGSATILPGEKPAIFYTGIDPH-NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPD 195 (573)
Q Consensus 117 gv~sGsav~~~dg~~~l~YTg~~~~-~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~ 195 (573)
++.-|+.+...+|+++|+|++.... ..-.+++|+|++.- -.|++...+||+..+ .+. ...--...+ +.+.+
T Consensus 159 ~~~EGP~i~k~~G~YYL~yS~~~~~~~~Y~v~~a~s~~p~----GP~~~~~~~pil~~~--~~~-~~g~GH~s~-v~~~~ 230 (295)
T cd08982 159 PWMEGAWMTKHNGKYYLQYAAPGTEFNTYADGVYVSDSPL----GPFTYQPHNPFSYKP--GGF-ITGAGHGST-FQDKY 230 (295)
T ss_pred ccccccEEEEECCEEEEEEeCCCcccCcEeEEEEEeCCCC----CCCCcCCCCccccCC--CCe-EecCCcccE-EECCC
Confidence 3566777777899999999865432 23357888887653 457766568988644 210 011112333 35567
Q ss_pred CeEEEEEee
Q 008242 196 KRWRVIIGS 204 (573)
Q Consensus 196 g~~~m~~g~ 204 (573)
|+|+++.=+
T Consensus 231 G~~~~~yh~ 239 (295)
T cd08982 231 GNYWHVGTM 239 (295)
T ss_pred CCEEEEEEE
Confidence 888887633
No 75
>cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases. The glycosyl hydrolase family 62 includes eukaryotic and prokaryotic enzymes, most of which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. The enzyme does not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor does it display any non-specific arabinofuranosidase activity. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. The catalytic mechanism of this family has not yet been determined, but is predicted to display a single displacement or inverting mechanism, based on its location in the same carbohydrate-active enzymes database (CAZY) clan (Clan F) as that occupied by GH43, a well characterized inverting family. Similarly, the catalytic residues are predicted fr
Probab=96.23 E-value=0.16 Score=51.92 Aligned_cols=142 Identities=14% Similarity=0.224 Sum_probs=79.2
Q ss_pred ccCCcceEEE--CCEEEEEeeeCCCCCCCCCcEEEEEEeCCCC---cceecCCCCCCCCCccCCceEeeeEEEcCCCceE
Q 008242 58 INDPNGVMIY--KGIYHLFYQYNPKGAVWGNIVWAHSTSKDLI---NWIPHDPAIYPSQQSDINGCWSGSATILPGEKPA 132 (573)
Q Consensus 58 ~nDPng~~~~--~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv---~W~~~~~al~P~~~~d~~gv~sGsav~~~dg~~~ 132 (573)
..-|. ++|+ +++|+|+||+.+ .+.+||+|.. .|....+.+.........+...-.+ +.+|+++|
T Consensus 78 fwAPq-Vfyf~pk~kwYL~Yq~~~---------~~yaTs~dp~~P~~ws~~qpl~~~~~~~~~~~~ID~~v-I~Dd~~~Y 146 (303)
T cd08987 78 RVAPQ-VFYFAPQNKWYLIYQWWP---------AAYSTNSDISNPNGWSAPQPLFSGTPNGSPGGWIDFWV-ICDDTNCY 146 (303)
T ss_pred cccCE-EeeeccCCEEEEEEecCc---------eEEEeCCCCCCCCccCCCcccccCcccCCCCCccceeE-EeCCCCEE
Confidence 44673 6655 699999999732 5689999974 6776555443322222234555665 55689999
Q ss_pred EEEcccCCCCceeEEEEEEcCCCCCccceeEecCCCccc--cCCCCCCCCCCCccCCeeEEecCCC--eEEEEEeeecCC
Q 008242 133 IFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLM--APDAMNQINTSSFRDPTTAWLGPDK--RWRVIIGSKINR 208 (573)
Q Consensus 133 l~YTg~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi--~~~~~~~~~~~~~RDP~V~~~~~~g--~~~m~~g~~~~~ 208 (573)
||+.+-+. .+..|-...+ +|-..-.+++. ... . ...-|.-|.| ++ .+| +|+|++-+....
T Consensus 147 Lff~~dnG----~iyra~~~~~------nFp~~~~~~~~~~~~~--~--~~~lfEa~~V-yk-v~G~~~YlmiveA~g~~ 210 (303)
T cd08987 147 LFFSDDNG----KLYRSSTTLG------NFPNGGTETVIIMSDS--N--KNNLFEASNV-YK-VKGQNQYLLIVEAIGSD 210 (303)
T ss_pred EEEecCCC----eEEEEecchh------hCCCCCCccEEEecCC--C--ccccceeeEE-EE-ECCCeEEEEEEEecCCC
Confidence 99987442 3444432221 12211112222 211 0 1244778885 55 344 999999875421
Q ss_pred eeE-EEEEEeCCCC-CCEEc
Q 008242 209 KGL-AILYRSKDFV-HWIKA 226 (573)
Q Consensus 209 ~G~-i~ly~S~Dl~-~W~~~ 226 (573)
.++ ..-++|++|. .|+..
T Consensus 211 ~~rYfrs~Ts~Sl~GpWt~~ 230 (303)
T cd08987 211 GGRYFRSWTATSLDGPWTPL 230 (303)
T ss_pred CCCeEEEEEcCCCCCCceec
Confidence 111 1126666664 68876
No 76
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=96.15 E-value=0.13 Score=51.97 Aligned_cols=145 Identities=17% Similarity=0.111 Sum_probs=81.1
Q ss_pred CEEEEEeeeCCCCCCCCCcEEEEEEe--CCC-CcceecCCCCCCCCCccCCceEeeeEEEcCCCceEEEEcccCCC---C
Q 008242 69 GIYHLFYQYNPKGAVWGNIVWAHSTS--KDL-INWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIFYTGIDPH---N 142 (573)
Q Consensus 69 G~yHlfyq~~P~~~~~g~~~Wgha~S--~Dl-v~W~~~~~al~P~~~~d~~gv~sGsav~~~dg~~~l~YTg~~~~---~ 142 (573)
|+...++.. +...+.....-.+| +|. .+|.+...+..+. . ....+..++++.+.+|+++|||+..... .
T Consensus 1 G~l~a~~~~---~~~~~~~d~~i~~S~s~D~G~tWs~~~~v~~~~-~-~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~ 75 (275)
T PF13088_consen 1 GRLLAVWEG---GSDEGAIDIVIRRSRSTDGGKTWSEPRIVADGP-K-PGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWS 75 (275)
T ss_dssp SEEEEEEEE---SSCSCCEEEEEEEECCCCCTTEEEEEEEEETST-B-TTCEEEEEEEEEETTSEEEEEEEEEETTESCC
T ss_pred CeEEEEEEC---CcccCCCCEEEEEEEeeCCCCeeCCCEEEeecc-c-cCCcccCcEEEEeCCCCEEEEEEEccCCCCCC
Confidence 455666665 44445556666666 987 8999865444333 1 1245677777777799999999544321 1
Q ss_pred ceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecCCeeEEEEEEeCC-CC
Q 008242 143 RQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGLAILYRSKD-FV 221 (573)
Q Consensus 143 ~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~~~G~i~ly~S~D-l~ 221 (573)
.......+|.|+| ++|.... .|...+ ........+.+-+. . .+|++++..-........+.++.|+| ++
T Consensus 76 ~~~~~~~~S~D~G----~TWs~~~--~l~~~~--~~~~~~~~~~~~i~-~-~~G~l~~~~~~~~~~~~~~~~~~S~D~G~ 145 (275)
T PF13088_consen 76 GSRIYYSRSTDGG----KTWSEPT--DLPPGW--FGNFSGPGRGPPIQ-L-PDGRLIAPYYHESGGSFSAFVYYSDDGGK 145 (275)
T ss_dssp TCEEEEEEESSTT----SS-EEEE--EEHHHC--CCSCEECSEEEEEE-E-CTTEEEEEEEEESSCEEEEEEEEESSTTS
T ss_pred ceeEEEEEECCCC----CCCCCcc--cccccc--ccceeccceeeeeE-e-cCCCEEEEEeeccccCcceEEEEeCCCCc
Confidence 2222348899975 8999853 333221 11111223443322 3 57877776322222334455656655 79
Q ss_pred CCEEccc
Q 008242 222 HWIKAKH 228 (573)
Q Consensus 222 ~W~~~~~ 228 (573)
.|+....
T Consensus 146 tW~~~~~ 152 (275)
T PF13088_consen 146 TWSSGSP 152 (275)
T ss_dssp SEEEEEE
T ss_pred eeecccc
Confidence 9997653
No 77
>PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure []. ; PDB: 2AEZ_A 2ADE_A 2ADD_A 1ST8_A 2AEY_A 3UGG_A 3UGH_B 3UGF_B 1Y9M_A 1Y4W_A ....
Probab=96.11 E-value=0.091 Score=54.67 Aligned_cols=113 Identities=18% Similarity=0.189 Sum_probs=68.3
Q ss_pred EcCCCceEEEEcccCC---CCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEE
Q 008242 125 ILPGEKPAIFYTGIDP---HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVI 201 (573)
Q Consensus 125 ~~~dg~~~l~YTg~~~---~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~ 201 (573)
+-.+|+|+|||--+-. .+...-+.|+|+| |+||+.. .++|.|. ..++....-...++.. ++.++|+
T Consensus 16 ~~~~G~yHlFyQ~~P~~~~~g~~~WgHa~S~D-----lv~W~~~--~~aL~P~--~~~d~~g~~SGs~~~~--~~~~~~~ 84 (308)
T PF00251_consen 16 VYYDGKYHLFYQYNPFGPEWGNMHWGHATSKD-----LVHWEHL--PVALPPD--EEYDADGCFSGSAVVD--DDNLVLF 84 (308)
T ss_dssp EEETTEEEEEEEEETTSSSS-SBEEEEEEESS-----SSSEEEE--EEEE-SS--SGGGTTEEEEEEEEEE--TTCEEEE
T ss_pred eEeCCEEEEEeccCCCCcccceeEEEEEECCC-----CCCceeC--CceEccc--ccCCcCccCcceEEEE--CCEEEEE
Confidence 3358999999975532 1345678999998 5899986 3666554 2222222223333333 3478888
Q ss_pred EeeecC-CeeEEEEEEe-CCCCCCEEcc--cccccC---CCCCccccCceEEec
Q 008242 202 IGSKIN-RKGLAILYRS-KDFVHWIKAK--HPLHSV---KGTGMWECPDFFPVS 248 (573)
Q Consensus 202 ~g~~~~-~~G~i~ly~S-~Dl~~W~~~~--~~~~~~---~~~~~wEcPdlf~l~ 248 (573)
+.+... ......++.| +|+.+|+... .++... .....|-=|.+|...
T Consensus 85 YTg~~~~~~~~q~~A~s~d~~~~w~k~~~~~pvi~~~p~~~~~~~RDP~v~~~~ 138 (308)
T PF00251_consen 85 YTGNNRDGKQVQCLAYSTDDGITWTKYPQGNPVIPEPPPGDTTDFRDPKVFWRE 138 (308)
T ss_dssp EEEEETTTEEEEEEEEESSTTSSEEE-TTTCESBESSSTTSCTSEEEEEEEEEC
T ss_pred EeccCCCCCeEEEEEEECCCCCceEEcCCCCcEEEecccCCCCccccCeEEEec
Confidence 877653 2445567777 8899999864 455432 123456777776554
No 78
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=95.18 E-value=3.9 Score=42.96 Aligned_cols=170 Identities=13% Similarity=0.104 Sum_probs=92.4
Q ss_pred eEEECCEEEEEeeeCCC-CCCCC-CcEEEEEEeCCC-CcceecCCCCCCCCCccCCceEeeeEEEcCCCceEEEEcccCC
Q 008242 64 VMIYKGIYHLFYQYNPK-GAVWG-NIVWAHSTSKDL-INWIPHDPAIYPSQQSDINGCWSGSATILPGEKPAIFYTGIDP 140 (573)
Q Consensus 64 ~~~~~G~yHlfyq~~P~-~~~~g-~~~Wgha~S~Dl-v~W~~~~~al~P~~~~d~~gv~sGsav~~~dg~~~l~YTg~~~ 140 (573)
++...+..-.|+-.... ....+ .+....++|+|. .+|.... ++..... ....++.++.+.+.+|+++|||.....
T Consensus 21 l~~~~~~lla~~e~r~~~~~D~~~~~~iv~~~S~D~G~tW~~~~-~i~~~~~-~~~~~~~p~~v~~~~g~l~l~~~~~~~ 98 (351)
T cd00260 21 LVCTPGTLLAFADARYGGCSDRSNAIDIVARRSTDGGKTWSPST-VISDGDG-KSSRVKDPTVVVDGLGRVFLLVGSFPN 98 (351)
T ss_pred EEEECCEEEEEEEEEEcCCCCCCcccceeEEEeccCCCcccccE-EehhcCC-CCCcEEcceEEEcCCCCEEEEEEECCC
Confidence 34344444444432221 23344 567888889984 8999863 3433322 234577888887644999999976543
Q ss_pred C----------CceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCC--eeEEecCCCeEEEEEeeecCC
Q 008242 141 H----------NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDP--TTAWLGPDKRWRVIIGSKINR 208 (573)
Q Consensus 141 ~----------~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP--~V~~~~~~g~~~m~~g~~~~~ 208 (573)
. ....+.+.+|.|+| .+|.+. ..+........+ ..-++.| -++ . ++|+++|.+-.....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~S~D~G----~tW~~p--~~l~~~~~~~~~-~~~~~~~g~gi~-l-~~Grlv~p~~~~~~~ 169 (351)
T cd00260 99 GEGEDNDYAGPSNAYLVLVYSDDDG----ITWSSP--RDLTPSVKGDNW-AALFTGPGSGIQ-M-KDGRLVFPVYGGNAG 169 (351)
T ss_pred cccccccccCCCceEEEEEEEEcCC----ceecCC--ccCCccccCcce-eEEEecCcCeEE-e-cCCcEEEEEEEEcCC
Confidence 1 23457788898875 799863 223221100011 1122333 222 3 478887776554321
Q ss_pred --eeEEEEEEeCCCCCCEEcccccccCCCCCccccCceEEec
Q 008242 209 --KGLAILYRSKDFVHWIKAKHPLHSVKGTGMWECPDFFPVS 248 (573)
Q Consensus 209 --~G~i~ly~S~Dl~~W~~~~~~~~~~~~~~~wEcPdlf~l~ 248 (573)
.-...+|..++++.|+.. .... ......| |.++++.
T Consensus 170 ~~~~~~~~~S~D~G~tW~~~-~~~~--~~~~~~e-~~i~el~ 207 (351)
T cd00260 170 GRVSSAIIYSDDSGKTWKLG-EGVN--DAGGCSE-CSVVELS 207 (351)
T ss_pred CCEEEEEEEECCCCCCcEEC-CCCC--CCCCCcC-CEEEEec
Confidence 223345544567999864 3221 1123345 7888885
No 79
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=94.28 E-value=0.25 Score=51.46 Aligned_cols=143 Identities=17% Similarity=0.268 Sum_probs=70.4
Q ss_pred CCcceEEECCEEEEEe-eeCCCCCCCCCcEE--EEEEeCCC-CcceecCCCCCCC-CCccCCceE--eeeEEEcCCCceE
Q 008242 60 DPNGVMIYKGIYHLFY-QYNPKGAVWGNIVW--AHSTSKDL-INWIPHDPAIYPS-QQSDINGCW--SGSATILPGEKPA 132 (573)
Q Consensus 60 DPng~~~~~G~yHlfy-q~~P~~~~~g~~~W--gha~S~Dl-v~W~~~~~al~P~-~~~d~~gv~--sGsav~~~dg~~~ 132 (573)
.|-.++ .+...+|+- .|+... +...| -++.|+|- ..|.+........ +.+. ..+ -||.|+.+||+++
T Consensus 62 rPTtvv-kgn~IymLvG~y~~~~---~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~--~figgGGSGV~m~dGTLV 135 (310)
T PF13859_consen 62 RPTTVV-KGNKIYMLVGSYSRSA---GADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWK--QFIGGGGSGVVMEDGTLV 135 (310)
T ss_dssp EEEEEE-ETTEEEEEEEEESS-----SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEE--EEEE-SEE-EE-TTS-EE
T ss_pred eeeeee-cceeEEEEEEEEeccc---cccccceeeeeccCCcceeeecccCCchhccccc--eeecCCCCceEEcCCCEE
Confidence 575433 455555555 454321 22234 35667664 6898853221111 1111 122 1566677899987
Q ss_pred EEEcccCCCCc-eeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeecCCeeE
Q 008242 133 IFYTGIDPHNR-QVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKINRKGL 211 (573)
Q Consensus 133 l~YTg~~~~~~-~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~~~~G~ 211 (573)
+=-.+...... ..-.|.+|+|.+ .+|+-..+ ......+||.|+.. ++|+..|+.... .|+
T Consensus 136 FPv~a~~~~~~~~~SlIiYS~d~g----~~W~lskg-----------~s~~gC~~psv~EW-e~gkLlM~~~c~---~g~ 196 (310)
T PF13859_consen 136 FPVQATKKNGDGTVSLIIYSTDDG----KTWKLSKG-----------MSPAGCSDPSVVEW-EDGKLLMMTACD---DGR 196 (310)
T ss_dssp EEEEEEETT---EEEEEEEESSTT----SS-EE-S---------------TT-EEEEEEEE--TTEEEEEEE-T---TS-
T ss_pred EEEeeeccCccceEEEEEEECCCc----cceEeccc-----------cCCCCcceEEEEec-cCCeeEEEEecc---cce
Confidence 76666555444 366788998865 78985421 11234789998765 578888876543 255
Q ss_pred EEEEEeCCC-CCCEEcc
Q 008242 212 AILYRSKDF-VHWIKAK 227 (573)
Q Consensus 212 i~ly~S~Dl-~~W~~~~ 227 (573)
-.+|+|.|. ..|+..-
T Consensus 197 rrVYeS~DmG~tWtea~ 213 (310)
T PF13859_consen 197 RRVYESGDMGTTWTEAL 213 (310)
T ss_dssp --EEEESSTTSS-EE-T
T ss_pred EEEEEEcccceehhhcc
Confidence 579999885 8899743
No 80
>COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=92.70 E-value=1.7 Score=48.01 Aligned_cols=150 Identities=12% Similarity=0.067 Sum_probs=79.6
Q ss_pred CCCCCccCCcceEEECCEEEEEeeeCCCCC-CCCCcEEEEEEeCC-CCcceecCCCCCCCCCccCCceEeeeEEEcCCCc
Q 008242 53 PPKNWINDPNGVMIYKGIYHLFYQYNPKGA-VWGNIVWAHSTSKD-LINWIPHDPAIYPSQQSDINGCWSGSATILPGEK 130 (573)
Q Consensus 53 p~~gw~nDPng~~~~~G~yHlfyq~~P~~~-~~g~~~Wgha~S~D-lv~W~~~~~al~P~~~~d~~gv~sGsav~~~dg~ 130 (573)
|..|=+.-|+ +.|+||+|+|+|.--+... .+.+++--..+.++ .=.|.+ |+.+ +.. +.+.+|.+.|+||+
T Consensus 86 ~~S~giWAPd-l~y~dGkfwl~ytdvk~~~g~~k~~~nyl~t~~s~~G~WsD-pi~l-~~~-----~~iDPslf~D~dGr 157 (549)
T COG3507 86 PYSGGIWAPD-LSYHDGKFWLYYTDVKRSGGPYKNAGNYLVTAESIDGPWSD-PIKL-NGS-----NAIDPSLFFDKDGR 157 (549)
T ss_pred CCCCceeccc-eecCCCcEEEEEecccccCCcccccccEEEEecCCCCCccc-ceec-CCc-----CccCCceeecCCCC
Confidence 5566667784 7899999999996544422 22233333333333 236665 2222 211 25778999999999
Q ss_pred eEEEEcccCCC--CceeEEEEEEcCCCCCccceeEecCC--CccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEeeec
Q 008242 131 PAIFYTGIDPH--NRQVQNLAVPKNLSDPYLREWVKSPK--NPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIGSKI 206 (573)
Q Consensus 131 ~~l~YTg~~~~--~~~~q~lA~s~d~~~~~l~~w~k~~~--nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g~~~ 206 (573)
.+|+|-+.... ....-.+-.+... .+=.|..+ -.++- .+.+...-.-|. +.+ ++|-|||+.+.+.
T Consensus 158 ~wlv~~~w~~~~~~~~~~~i~l~~~~-----~~~~~l~g~~~~~~~----~G~~~~~~EGPh-l~k-~~gYYYL~~a~gG 226 (549)
T COG3507 158 KWLVNGSWDGGIFMHSFAGIILQEYD-----KTTQKLVGQGYKIIF----DGGNGGLTEGPH-LYK-KTGYYYLYVAEGG 226 (549)
T ss_pred EEEEecccCCCcccccccceeeeecc-----ccccccCCccceeEe----ccCCCccccCce-eec-cCCEEEEEEEcCC
Confidence 99999988743 1111112222111 01111111 01111 111122345676 555 6888888876543
Q ss_pred -CCee-EEEEEEeCCCC
Q 008242 207 -NRKG-LAILYRSKDFV 221 (573)
Q Consensus 207 -~~~G-~i~ly~S~Dl~ 221 (573)
...| .+.++||+.+.
T Consensus 227 ~t~~gh~~~vaRSKsid 243 (549)
T COG3507 227 LTTYGHAIRVARSKSID 243 (549)
T ss_pred CCccceeEEEEeccCCC
Confidence 2233 57899998764
No 81
>PTZ00334 trans-sialidase; Provisional
Probab=86.53 E-value=4.2 Score=47.29 Aligned_cols=149 Identities=17% Similarity=0.252 Sum_probs=81.4
Q ss_pred ccCCcceEEECCEEEEE--eeeCCC--------CCCCC-CcEEEEEEeC-----CCCcceecCCCCCCC---CCccC-Cc
Q 008242 58 INDPNGVMIYKGIYHLF--YQYNPK--------GAVWG-NIVWAHSTSK-----DLINWIPHDPAIYPS---QQSDI-NG 117 (573)
Q Consensus 58 ~nDPng~~~~~G~yHlf--yq~~P~--------~~~~g-~~~Wgha~S~-----Dlv~W~~~~~al~P~---~~~d~-~g 117 (573)
.-.|-.++.-+..|-|- |-.... ...|+ ..-.|+++-. .-|+|.+.. .|... ..... .+
T Consensus 179 v~rPTTvvKGn~VfmLvG~y~~~~~~~~~~~~~~~~~~l~Lv~G~Vt~~~~~~~k~I~W~~~~-~l~~~~~~~~~~~l~~ 257 (780)
T PTZ00334 179 VSRPTTVVNGSDIYMFAGTYSFEVTDKAGNTAAAAKWGLLVAVGNVSNDGSSGKKKIYWKDAS-VIPWTDFEKQHESLTR 257 (780)
T ss_pred ccCCeEEeeCCEEEEEecccccccccccccccccCCCccEEEEEEeecCCCCCcceEECcCcc-cCCcccccccccccee
Confidence 34576666556666555 311111 11233 3556777632 248998733 33111 11010 11
Q ss_pred eE--eeeEEEcCCCceEEEEcccCCCCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCC
Q 008242 118 CW--SGSATILPGEKPAIFYTGIDPHNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPD 195 (573)
Q Consensus 118 v~--sGsav~~~dg~~~l~YTg~~~~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~ 195 (573)
.+ =||.|+.+||++++=-.+...++...-.|.+|+|.+ +|+=.. +......+||.|+-. ++
T Consensus 258 ~iggGGSGI~medGTLVFPv~a~~~~g~~vslIiYS~d~g-----~W~ls~-----------g~s~~gC~~P~I~EW-e~ 320 (780)
T PTZ00334 258 LIGGGGSGVQMKDGTLVFPVEGTKKDGKAVSLIIYSSATE-----SGNLSK-----------GMSADGCSDPSVVEW-KE 320 (780)
T ss_pred ecCCCcCeEEecCCeEEEEEEEEcCCCCEEEEEEEecCCC-----CeEEcC-----------CCCCCCCCCCEEEEE-cC
Confidence 11 145566678997654445444454555678888763 485321 112245799998755 46
Q ss_pred CeEEEEEeeecCCeeEEEEEEeCCC-CCCEEcc
Q 008242 196 KRWRVIIGSKINRKGLAILYRSKDF-VHWIKAK 227 (573)
Q Consensus 196 g~~~m~~g~~~~~~G~i~ly~S~Dl-~~W~~~~ 227 (573)
|+..|+..... |+-.+|+|.|. ..|+..-
T Consensus 321 gkLlM~t~C~d---G~RrVYES~DmG~tWtEAl 350 (780)
T PTZ00334 321 GKLMMMTACDD---GRRRVYESGDKGDSWTEAL 350 (780)
T ss_pred CeEEEEEEeCC---CCEEEEEECCCCCChhhCC
Confidence 78777665532 44469999885 8899654
No 82
>PF13810 DUF4185: Domain of unknown function (DUF4185)
Probab=86.40 E-value=21 Score=37.37 Aligned_cols=153 Identities=15% Similarity=0.140 Sum_probs=85.7
Q ss_pred CCcceEEECCEEEEEeeeCCC-CC---CCCCcEEEEEEeCC-CCcceecCCCCCCCCCccCCce------EeeeEEEcCC
Q 008242 60 DPNGVMIYKGIYHLFYQYNPK-GA---VWGNIVWAHSTSKD-LINWIPHDPAIYPSQQSDINGC------WSGSATILPG 128 (573)
Q Consensus 60 DPng~~~~~G~yHlfyq~~P~-~~---~~g~~~Wgha~S~D-lv~W~~~~~al~P~~~~d~~gv------~sGsav~~~d 128 (573)
=|.+.|-.+|+-+|.|+..-. +. .|..-.=+.+.|.| ..+|+..+..+.+....- .|+ |.-++....|
T Consensus 96 iPt~~I~v~~~~Yl~~msv~~wg~~~G~W~tn~S~i~~S~D~G~tW~~~~~~~~~~~~~~-~g~~~~~~~fq~~a~~~~d 174 (316)
T PF13810_consen 96 IPTDGISVGGRQYLHYMSVRNWGNVPGSWTTNYSGIAYSDDNGETWTVVPGTIRPNSPFH-PGFNQGNWNFQMAAFVKDD 174 (316)
T ss_pred cccceEEECCcEEEEEEEEccCCCCCCccccCceEEEEeCCCCCCceeCCCccccccccc-CCccccccccccccccCCC
Confidence 488888899999999986522 11 23322446889999 689999986666554110 111 2223443346
Q ss_pred CceEEEEcccCCCCceeEEEEEEc-CC-CCCc------cce--eEecCC--CccccCCCCCCCCCCCccCCeeEEecCCC
Q 008242 129 EKPAIFYTGIDPHNRQVQNLAVPK-NL-SDPY------LRE--WVKSPK--NPLMAPDAMNQINTSSFRDPTTAWLGPDK 196 (573)
Q Consensus 129 g~~~l~YTg~~~~~~~~q~lA~s~-d~-~~~~------l~~--w~k~~~--nPvi~~~~~~~~~~~~~RDP~V~~~~~~g 196 (573)
|-+|+|=|...+. ....||... +. .|+. ... |.+... .||+..+ +---.|.|.+..|
T Consensus 175 gyVYv~gt~~~R~--g~~~LaRV~~~~i~d~~ayeyw~g~~~~W~~~~~~atpv~~~~---------vgElSv~~~~~~g 243 (316)
T PF13810_consen 175 GYVYVYGTPFGRN--GGVYLARVPPDDILDRSAYEYWDGSGGGWSWGNPPATPVLPGP---------VGELSVRYNEYLG 243 (316)
T ss_pred CEEEEEeCCCCCC--CcEEEEEeCHHHCCChhhccccCCCCcccccCCCCccccccCC---------ccceEEEEeCCCC
Confidence 6666666644432 233444332 11 0100 012 544221 3555332 2233466776789
Q ss_pred eEEEEEeeecCCeeEEEEEEeCCCC-CCEEc
Q 008242 197 RWRVIIGSKINRKGLAILYRSKDFV-HWIKA 226 (573)
Q Consensus 197 ~~~m~~g~~~~~~G~i~ly~S~Dl~-~W~~~ 226 (573)
+|+|+.... ..+.|.+.++++.. .|...
T Consensus 244 k~Vl~~~~~--~~~~I~~RtA~~P~GpWs~~ 272 (316)
T PF13810_consen 244 KWVLSYFDA--GTGGIVLRTAPSPTGPWSEP 272 (316)
T ss_pred EEEEEEecc--cCCcEEEEecCCCCCCCCCC
Confidence 999998653 33568888888876 58743
No 83
>COG3940 Predicted beta-xylosidase [General function prediction only]
Probab=82.82 E-value=7.2 Score=37.97 Aligned_cols=102 Identities=24% Similarity=0.399 Sum_probs=62.9
Q ss_pred eEEECC-EEEEEeeeCCCCCCCCCcEEEEEEeCCCCcceec--CCCCC-CCCCccCCceE--eeeEEEcCCCceEEEEcc
Q 008242 64 VMIYKG-IYHLFYQYNPKGAVWGNIVWAHSTSKDLINWIPH--DPAIY-PSQQSDINGCW--SGSATILPGEKPAIFYTG 137 (573)
Q Consensus 64 ~~~~~G-~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv~W~~~--~~al~-P~~~~d~~gv~--sGsav~~~dg~~~l~YTg 137 (573)
.++++| .|+++-|..|.-. |+..+..|.-.+ .|+-. |+-|. |.-+|+..|.| .|.||+.++|++.+-|.+
T Consensus 137 tfeh~gk~yyvwaqkdp~i~--gnsniyiaemen--pwtikgepvmlskpe~dwe~~gfwvnegpav~k~ngkifi~ysa 212 (324)
T COG3940 137 TFEHNGKLYYVWAQKDPNIK--GNSNIYIAEMEN--PWTIKGEPVMLSKPELDWEIKGFWVNEGPAVLKKNGKIFITYSA 212 (324)
T ss_pred eeeeCCEEEEEEeccCCCcc--CCcceEEEeccC--CceecCceEEecCCCcccEEEEEEecCCceEEEECCEEEEEEec
Confidence 345655 5778888888644 444555555444 46654 33333 44467767766 488888889999999987
Q ss_pred cCCCCceeEEEEEEcCCC---CCccceeEecCCCcccc
Q 008242 138 IDPHNRQVQNLAVPKNLS---DPYLREWVKSPKNPLMA 172 (573)
Q Consensus 138 ~~~~~~~~q~lA~s~d~~---~~~l~~w~k~~~nPvi~ 172 (573)
...+..-..++-.....+ |+ .+|+|. ..||+.
T Consensus 213 satd~nycmgllwanen~dlldp--aswtks-ptpvf~ 247 (324)
T COG3940 213 SATDVNYCMGLLWANENSDLLDP--ASWTKS-PTPVFK 247 (324)
T ss_pred cccccceeeeeeeecccCCcCCc--hhcccC-CCccee
Confidence 654433344554443222 33 579997 478884
No 84
>PF02435 Glyco_hydro_68: Levansucrase/Invertase; InterPro: IPR003469 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family consists of the glycosyl hydrolase 68 family (GH68 from CAZY), including several bacterial levansucrase enzymes, and invertase from Zymomonas. Levansucrase (2.4.1.10 from EC), also known as beta-D-fructofuranosyl transferase, catalyses the conversion of sucrose and (2,6-beta-D-fructosyl)(N) to glucose and (2,6-beta-D-fructosyl)(N+1), where other sugars can also act as fructosyl acceptors. Invertase, or extracellular sucrase (3.2.1.26 from EC), catalyses the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides.; GO: 0050053 levansucrase activity, 0009758 carbohydrate utilization; PDB: 2YFR_A 2YFT_A 2YFS_A 1W18_A 3OM7_B 3OM4_C 3OM6_D 3OM5_A 3OM2_A 1PT2_A ....
Probab=79.34 E-value=35 Score=37.10 Aligned_cols=128 Identities=12% Similarity=0.130 Sum_probs=82.0
Q ss_pred CCEEEEEeeeCCCC-CCC-----CCcEEEEEEeCC----CCcceecCCCCCCCCCccC-------CceEeeeEEEc-CCC
Q 008242 68 KGIYHLFYQYNPKG-AVW-----GNIVWAHSTSKD----LINWIPHDPAIYPSQQSDI-------NGCWSGSATIL-PGE 129 (573)
Q Consensus 68 ~G~yHlfyq~~P~~-~~~-----g~~~Wgha~S~D----lv~W~~~~~al~P~~~~d~-------~gv~sGsav~~-~dg 129 (573)
+|+-.|||...-.+ ..- -...-|++.+.| +-.|+.+.+.+.|++.+-+ ...-.+.++.+ ++|
T Consensus 143 dg~I~LfYTav~~~~~~~~~Q~l~t~~~g~~~~d~~~v~i~g~~~~~~lfe~DG~~Yqt~~Q~~~~afRDP~~f~DP~~G 222 (428)
T PF02435_consen 143 DGSIQLFYTAVGFSDTPTFRQRLATATLGLIHADDDGVWITGFSNHHELFEGDGKHYQTYEQNPGYAFRDPHVFEDPEDG 222 (428)
T ss_dssp TSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEECSTEEEEEEEEEEEEEES--SSSB--HHHHHH---EEEEEEEETTTT
T ss_pred CCeEEEEEeecccCCCcchhhhhhhHhcCeeecCCCceeEccccceeEeeccchhhhhChhhcCCccccCCeeEECCCCC
Confidence 69999999984331 111 124557777777 5678888778888864321 23456788876 589
Q ss_pred ceEEEEcccCCC--------------------------------CceeEEEEEEcCCCCCccceeEecCCCccccCCCCC
Q 008242 130 KPAIFYTGIDPH--------------------------------NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMN 177 (573)
Q Consensus 130 ~~~l~YTg~~~~--------------------------------~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~ 177 (573)
+-||+|.|+... ..-.++||...+.. +..|+-+ .|+|...
T Consensus 223 ~~YLvFEgNtg~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~A~~~ng~iGi~~~~~~~---~~~w~~~--~PL~~a~--- 294 (428)
T PF02435_consen 223 KRYLVFEGNTGGERNWANYGGDDLGNVPGDPKLENNDNKSGASYANGAIGIAKLTNDD---GTVWELL--PPLLSAN--- 294 (428)
T ss_dssp EEEEEEEEEBSTTSBGGGT-SHHHHHHHHHHHHHHSCCHHHHHH-EEEEEEEEESTTT---TSEEEEE--EEEEEET---
T ss_pred cEEEEEecccCCCCCccccCccccccccccccccccccccccceecceeeeEEecCCC---CCccEEe--Ccceecc---
Confidence 999999987531 01346788887642 3568876 4999654
Q ss_pred CCCCCCccCCeeEEecCCCeEEEEEeeec
Q 008242 178 QINTSSFRDPTTAWLGPDKRWRVIIGSKI 206 (573)
Q Consensus 178 ~~~~~~~RDP~V~~~~~~g~~~m~~g~~~ 206 (573)
+ -.....=|.||.+ +|+||++..++.
T Consensus 295 ~-v~de~ERP~iv~~--~gkyYLFt~s~~ 320 (428)
T PF02435_consen 295 G-VNDELERPHIVFM--NGKYYLFTISHL 320 (428)
T ss_dssp T-TBS-EEEEEEEEE--TTEEEEEEEEEG
T ss_pred c-ccccccCCcEEEE--CCEEEEEEEecc
Confidence 1 1234567887754 899999998875
No 85
>COG3940 Predicted beta-xylosidase [General function prediction only]
Probab=77.03 E-value=78 Score=31.07 Aligned_cols=169 Identities=18% Similarity=0.297 Sum_probs=94.3
Q ss_pred CCCccceecCCCCCccCCcceEEECCEEEEEeeeCCCCC-CCC--CcEEE--EEEeCCCC--cceecCCCCCCCCCccCC
Q 008242 44 PYRTGYHFQPPKNWINDPNGVMIYKGIYHLFYQYNPKGA-VWG--NIVWA--HSTSKDLI--NWIPHDPAIYPSQQSDIN 116 (573)
Q Consensus 44 ~~RP~~H~~p~~gw~nDPng~~~~~G~yHlfyq~~P~~~-~~g--~~~Wg--ha~S~Dlv--~W~~~~~al~P~~~~d~~ 116 (573)
-|| ++---|-...+.-| -+-+.+|+|++||-..|... .-| +++.- ...+.|-+ +|.+.+....+ |+.
T Consensus 57 vwr-k~esgpms~liwap-eih~ingkwyiyfaaa~ta~~k~g~f~hrmfvlene~anpltg~w~ekgqikt~---wes- 130 (324)
T COG3940 57 VWR-KHESGPMSNLIWAP-EIHFINGKWYIYFAAAPTANIKDGTFNHRMFVLENENANPLTGNWVEKGQIKTA---WES- 130 (324)
T ss_pred EEe-ccCCCchhhccccc-ceeEEcceEEEEEeecCcccccccccceeEEEEecCCCCCCcccceecceeccc---hhc-
Confidence 355 33344555566778 45678999999999888642 112 22222 22233332 78777655444 332
Q ss_pred ceEeeeE-EEcCCCceEEEEcccCC--CCceeEEEEEEcCCCCCccceeEecCCCccc-cCCCCCCCCCCCc---cCCee
Q 008242 117 GCWSGSA-TILPGEKPAIFYTGIDP--HNRQVQNLAVPKNLSDPYLREWVKSPKNPLM-APDAMNQINTSSF---RDPTT 189 (573)
Q Consensus 117 gv~sGsa-v~~~dg~~~l~YTg~~~--~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi-~~~~~~~~~~~~~---RDP~V 189 (573)
||=.| +..++|+.+..+...+. .+...+.+|-..+ .|+-- +.||+ +.|. -.|+...| ..|.|
T Consensus 131 --fsldattfeh~gk~yyvwaqkdp~i~gnsniyiaemen-------pwtik-gepvmlskpe-~dwe~~gfwvnegpav 199 (324)
T COG3940 131 --FSLDATTFEHNGKLYYVWAQKDPNIKGNSNIYIAEMEN-------PWTIK-GEPVMLSKPE-LDWEIKGFWVNEGPAV 199 (324)
T ss_pred --ceeeeeeeeeCCEEEEEEeccCCCccCCcceEEEeccC-------Cceec-CceEEecCCC-cccEEEEEEecCCceE
Confidence 33222 22368887777766554 3666788887765 47754 56887 3341 23333333 57886
Q ss_pred EEecCCCeEEEEEeeec-CC---eeEEEEEEeCCCC---CCEEcccccc
Q 008242 190 AWLGPDKRWRVIIGSKI-NR---KGLAILYRSKDFV---HWIKAKHPLH 231 (573)
Q Consensus 190 ~~~~~~g~~~m~~g~~~-~~---~G~i~ly~S~Dl~---~W~~~~~~~~ 231 (573)
+ + .+|+-+..+++.. +. .|.+..-+..||+ +|+....|++
T Consensus 200 ~-k-~ngkifi~ysasatd~nycmgllwanen~dlldpaswtksptpvf 246 (324)
T COG3940 200 L-K-KNGKIFITYSASATDVNYCMGLLWANENSDLLDPASWTKSPTPVF 246 (324)
T ss_pred E-E-ECCEEEEEEeccccccceeeeeeeecccCCcCCchhcccCCCcce
Confidence 5 3 4676666665543 33 3433333446664 7987666654
No 86
>COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]
Probab=76.42 E-value=58 Score=36.17 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=56.2
Q ss_pred CCCceEEEEcccCC---CCceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCC-CCccCCeeEEecCCCeEEEEE
Q 008242 127 PGEKPAIFYTGIDP---HNRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINT-SSFRDPTTAWLGPDKRWRVII 202 (573)
Q Consensus 127 ~dg~~~l~YTg~~~---~~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~-~~~RDP~V~~~~~~g~~~m~~ 202 (573)
.+|+|++||-=+-. .+...=+.|+|.| |+||+-. .++|.|. ..++. ..|---.|+ + .++.+.|+-
T Consensus 50 ~~G~yHlFYQ~~P~~~~~g~~~WgHa~S~D-----lv~W~~~--piaL~Pd--~~~d~~g~ySGSAV~-~-~~~l~lfyt 118 (486)
T COG1621 50 FDGKYHLFYQYNPFGAAHGPKHWGHAVSKD-----LVHWEHL--PIALAPD--DDYDSHGCYSGSAVV-D-DGNLSLFYT 118 (486)
T ss_pred ECCEEEEEEecCCCCCCCCCceeeeeccCC-----cccceEC--CceecCC--CccccCCceeeeEEE-e-CCcEEEEEc
Confidence 48999999985432 2334456899977 5999964 2355444 22222 233444444 3 467777777
Q ss_pred eeecC---Cee-EEEEEEeCCCCCCEE-ccccccc
Q 008242 203 GSKIN---RKG-LAILYRSKDFVHWIK-AKHPLHS 232 (573)
Q Consensus 203 g~~~~---~~G-~i~ly~S~Dl~~W~~-~~~~~~~ 232 (573)
|...+ .+. .=.++.|+|..+++. .+.++..
T Consensus 119 g~v~~~~~~r~~~Q~iA~s~dg~~f~K~~~~~i~~ 153 (486)
T COG1621 119 GNVRDSNGIRQQTQCIAYSEDGGTFEKYSGNPIID 153 (486)
T ss_pred cceeccCCcceeEEEEEEEcCCCceEeccCCceec
Confidence 66442 222 235788988888776 3555543
No 87
>KOG0228 consensus Beta-fructofuranosidase (invertase) [Carbohydrate transport and metabolism]
Probab=70.98 E-value=27 Score=38.56 Aligned_cols=91 Identities=23% Similarity=0.301 Sum_probs=55.1
Q ss_pred CCCceEEEEcccCCC---CceeEEEEEEcCCCCCccceeEecCCCccccCCCCCCCCCCCccCCeeEEecCCCeEEEEEe
Q 008242 127 PGEKPAIFYTGIDPH---NRQVQNLAVPKNLSDPYLREWVKSPKNPLMAPDAMNQINTSSFRDPTTAWLGPDKRWRVIIG 203 (573)
Q Consensus 127 ~dg~~~l~YTg~~~~---~~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~~~~~~~~~~~RDP~V~~~~~~g~~~m~~g 203 (573)
.+|.|+|||.=+-.+ +...=+.|+|+| |++|+.++ |-|.|.+.... ...|-.-.++ . .+|.=.|+..
T Consensus 68 ykG~yHLFyQyNP~gavwg~ivWGHavSkD-----LinW~~lp--~Ai~Ps~~~di-ng~wSGSati-~-~~~~~vilyt 137 (571)
T KOG0228|consen 68 YKGKYHLFYQYNPKGAVWGNIVWGHAVSKD-----LINWEALP--PAIAPSEWFDI-NGCWSGSATI-D-PNNSPVILYT 137 (571)
T ss_pred cCcEEEEEEecCCCCceeeeeEeeeecchh-----hccccccC--cccCCCCcccc-CccccceEEE-c-cCCCeEEEec
Confidence 489999999865432 334557899988 69999864 66655411111 2234444432 3 5677777776
Q ss_pred eecCCeeEEEEEEe-CC-----CCCCEEcc
Q 008242 204 SKINRKGLAILYRS-KD-----FVHWIKAK 227 (573)
Q Consensus 204 ~~~~~~G~i~ly~S-~D-----l~~W~~~~ 227 (573)
+-+....++.+|.- .| |+.|...+
T Consensus 138 g~d~~~rqVqn~a~p~d~sdp~l~~w~k~~ 167 (571)
T KOG0228|consen 138 GIDPNNRQVQNYAYPKDVSDPQLIAWSKDG 167 (571)
T ss_pred ccCcCceEEEEEeccCCCCchhhheeecCC
Confidence 65544567777763 23 56787654
No 88
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process
Probab=62.78 E-value=1.8e+02 Score=29.38 Aligned_cols=70 Identities=24% Similarity=0.446 Sum_probs=42.0
Q ss_pred CCcceEEE--CCEEEEEeeeCCCCCCCCCcEEEEEEeCCCC---cceecCCCCCCCCCc-cCCceEeeeEEEcCCCceEE
Q 008242 60 DPNGVMIY--KGIYHLFYQYNPKGAVWGNIVWAHSTSKDLI---NWIPHDPAIYPSQQS-DINGCWSGSATILPGEKPAI 133 (573)
Q Consensus 60 DPng~~~~--~G~yHlfyq~~P~~~~~g~~~Wgha~S~Dlv---~W~~~~~al~P~~~~-d~~gv~sGsav~~~dg~~~l 133 (573)
-|. ++|+ +..|.|.||+.|. .....||+|.- -|.... .|..+..- ...|...--++- ++-..||
T Consensus 78 AP~-vFYFaPk~~W~L~yQwg~~-------~fsY~Ts~DptnpngWSapq-~lf~g~i~~~~~g~iD~~vI~-D~~n~yL 147 (271)
T PF03664_consen 78 APQ-VFYFAPKNIWYLAYQWGPA-------AFSYSTSSDPTNPNGWSAPQ-PLFSGSISGSGTGPIDQWVIC-DDTNMYL 147 (271)
T ss_pred cce-EEEecCCcEEEEEEecCCC-------cceeecCCCCCCCccCCCCc-ccccccccCCCCCceeeEEEe-cCCceEE
Confidence 463 6665 8999999997653 24567888874 477633 34333211 123444444433 3556899
Q ss_pred EEcccC
Q 008242 134 FYTGID 139 (573)
Q Consensus 134 ~YTg~~ 139 (573)
|+++-+
T Consensus 148 Ffa~Dn 153 (271)
T PF03664_consen 148 FFAGDN 153 (271)
T ss_pred EEcCCC
Confidence 998754
No 89
>PF13810 DUF4185: Domain of unknown function (DUF4185)
Probab=62.58 E-value=32 Score=36.05 Aligned_cols=93 Identities=15% Similarity=0.209 Sum_probs=51.9
Q ss_pred CCCceEEEEcccCCCC-------ceeEEEEEEcCCCCCccceeEecCCCccccCC-CCCCCCCCCccCCee--EEecCCC
Q 008242 127 PGEKPAIFYTGIDPHN-------RQVQNLAVPKNLSDPYLREWVKSPKNPLMAPD-AMNQINTSSFRDPTT--AWLGPDK 196 (573)
Q Consensus 127 ~dg~~~l~YTg~~~~~-------~~~q~lA~s~d~~~~~l~~w~k~~~nPvi~~~-~~~~~~~~~~RDP~V--~~~~~~g 196 (573)
.+|+.||.|..+..-+ .....||+|.|.+ .+|++.+ +.+-.+. ..++... .-.++. -+. .++
T Consensus 103 v~~~~Yl~~msv~~wg~~~G~W~tn~S~i~~S~D~G----~tW~~~~-~~~~~~~~~~~g~~~--~~~~fq~~a~~-~~d 174 (316)
T PF13810_consen 103 VGGRQYLHYMSVRNWGNVPGSWTTNYSGIAYSDDNG----ETWTVVP-GTIRPNSPFHPGFNQ--GNWNFQMAAFV-KDD 174 (316)
T ss_pred ECCcEEEEEEEEccCCCCCCccccCceEEEEeCCCC----CCceeCC-CcccccccccCCccc--ccccccccccc-CCC
Confidence 4889999999875322 1256799999975 8999874 2222221 0011110 011221 122 244
Q ss_pred eEEEEEeeecCCeeEEEEEEe-----CCCCCCEEcc
Q 008242 197 RWRVIIGSKINRKGLAILYRS-----KDFVHWIKAK 227 (573)
Q Consensus 197 ~~~m~~g~~~~~~G~i~ly~S-----~Dl~~W~~~~ 227 (573)
.|+-++|......|.+.|+|- .|+..|++-.
T Consensus 175 gyVYv~gt~~~R~g~~~LaRV~~~~i~d~~ayeyw~ 210 (316)
T PF13810_consen 175 GYVYVYGTPFGRNGGVYLARVPPDDILDRSAYEYWD 210 (316)
T ss_pred CEEEEEeCCCCCCCcEEEEEeCHHHCCChhhccccC
Confidence 577667765444566788885 3555677654
No 90
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=58.20 E-value=1.3e+02 Score=26.57 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=20.8
Q ss_pred CCeEEEEEEEeCCeEEEEccCCeEE
Q 008242 506 YEKLSLRSLIDHSIVESFGVGGKAC 530 (573)
Q Consensus 506 ~~~l~LrIfvD~S~vEVFvn~G~~v 530 (573)
++..+|+|.+..+..+|++| |+..
T Consensus 82 g~~F~i~I~~~~~~f~I~vn-g~~~ 105 (133)
T PF00337_consen 82 GQPFEIRIRVEEDGFKIYVN-GKHF 105 (133)
T ss_dssp TSEEEEEEEEESSEEEEEET-TEEE
T ss_pred CceEEEEEEEecCeeEEEEC-CeEE
Confidence 67899999999999999997 5544
No 91
>PF06905 FAIM1: Fas apoptotic inhibitory molecule (FAIM1); InterPro: IPR010695 This family consists of several fas apoptotic inhibitory molecule (FAIM) proteins. FAIM expression is upregulated in B cells by anti-Ig treatment that induces Fas-resistance, and overexpression of FAIM diminishes sensitivity to Fas-mediated apoptosis of B and non-B cell lines. FAIM is highly evolutionarily conserved and is widely expressed in murine tissues, suggesting that FAIM plays an important role in cellular physiology [].; GO: 0043066 negative regulation of apoptosis; PDB: 3MX7_A 2KW1_A 2KD2_A.
Probab=51.39 E-value=44 Score=31.95 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=25.8
Q ss_pred EEEEEEEeCCeEEEEccCCeEEEEEeeecCCc
Q 008242 509 LSLRSLIDHSIVESFGVGGKACITARVYPTLA 540 (573)
Q Consensus 509 l~LrIfvD~S~vEVFvn~G~~v~T~riyp~~~ 540 (573)
-+.||++|...++||+| |+..=|.+-|...+
T Consensus 108 ~~~RIvLdk~t~~vwvn-G~~iet~~eFvd~G 138 (177)
T PF06905_consen 108 QEYRIVLDKDTMDVWVN-GEKIETEGEFVDDG 138 (177)
T ss_dssp EEEEEEEETTTTEEEET-TCEE--EEEEETTC
T ss_pred CEEEEEEEcceEEEEEC-CEEccccceecCCC
Confidence 68999999999999997 67788999998765
No 92
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=31.09 E-value=42 Score=25.50 Aligned_cols=21 Identities=33% Similarity=0.399 Sum_probs=18.0
Q ss_pred CcchhHHHHHHHHHHHhhcce
Q 008242 1 MANFYLSLFLFFALFLGHGVV 21 (573)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (573)
|-++|+++.+++++|.+.||=
T Consensus 1 mk~~~~s~~ala~l~sLA~CG 21 (58)
T COG5567 1 MKNVFKSLLALATLFSLAGCG 21 (58)
T ss_pred ChhHHHHHHHHHHHHHHHhcc
Confidence 678999999999999888873
No 93
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=27.60 E-value=2.3e+02 Score=26.21 Aligned_cols=55 Identities=13% Similarity=0.072 Sum_probs=35.2
Q ss_pred CCeEEEEEEEeCCeEEEEccCCeEEEEEeeecCCc---cCCccEEEEEeCCceeEEEEEEEe
Q 008242 506 YEKLSLRSLIDHSIVESFGVGGKACITARVYPTLA---IDDYAHLYAFNNGTENVKINGLSA 564 (573)
Q Consensus 506 ~~~l~LrIfvD~S~vEVFvn~G~~v~T~riyp~~~---~~~~~~~~~~~~g~~~~~~~~l~~ 564 (573)
++-.+++|.+..+.|.++|| |+.+++..--.... ..-.++|. ..+ +.+.+.++++
T Consensus 127 ~~W~~~~I~~~g~~i~v~vn-G~~v~~~~d~~~~~~~~~~G~Igl~--~~~-~~~~frNi~I 184 (185)
T PF06439_consen 127 GEWNTVRIVVKGNRITVWVN-GKPVADFTDPSFPYSNPTKGPIGLQ--THG-SEVQFRNIKI 184 (185)
T ss_dssp TSEEEEEEEEETTEEEEEET-TEEEEEEETTSHHHHHHSSBEEEEE--CSS-STEEEEEEEE
T ss_pred CceEEEEEEEECCEEEEEEC-CEEEEEEEcCCCCCCCCCceEEEEE--eCC-CeEEEEEEEE
Confidence 57789999999999999997 78777765322210 11234443 333 3566776654
No 94
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=24.42 E-value=4.9e+02 Score=22.92 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=21.6
Q ss_pred CCeEEEEEEEeCCeEEEEccCCeEEEE
Q 008242 506 YEKLSLRSLIDHSIVESFGVGGKACIT 532 (573)
Q Consensus 506 ~~~l~LrIfvD~S~vEVFvn~G~~v~T 532 (573)
+...+|.|.+.....+|++| |+...+
T Consensus 76 g~~F~l~i~~~~~~f~i~vn-g~~~~~ 101 (128)
T smart00276 76 GQPFDLTIIVQPDHFQIFVN-GVHITT 101 (128)
T ss_pred CCEEEEEEEEcCCEEEEEEC-CEeEEE
Confidence 68899999999999999998 544433
No 95
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=22.90 E-value=5.2e+02 Score=22.65 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=20.7
Q ss_pred CCeEEEEEEEeCCeEEEEccCCeEE
Q 008242 506 YEKLSLRSLIDHSIVESFGVGGKAC 530 (573)
Q Consensus 506 ~~~l~LrIfvD~S~vEVFvn~G~~v 530 (573)
+...+|.|.++....+||+| |+..
T Consensus 77 g~~F~l~i~~~~~~f~i~vn-g~~~ 100 (127)
T cd00070 77 GQPFELTILVEEDKFQIFVN-GQHF 100 (127)
T ss_pred CCeEEEEEEEcCCEEEEEEC-CEeE
Confidence 68899999999999999998 4533
No 96
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=22.52 E-value=49 Score=24.34 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHhhcceeeccccccc
Q 008242 5 YLSLFLFFALFLGHGVVELQASHHVY 30 (573)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (573)
.++|++|+++|+++-+.++++++++.
T Consensus 12 ~~~~v~~~~~F~gi~~w~~~~~~k~~ 37 (49)
T PF05545_consen 12 SIGTVLFFVFFIGIVIWAYRPRNKKR 37 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhh
Confidence 35788999999999999999887653
No 97
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=21.81 E-value=70 Score=16.78 Aligned_cols=11 Identities=18% Similarity=0.483 Sum_probs=6.8
Q ss_pred EEcCCCCCccceeEe
Q 008242 150 VPKNLSDPYLREWVK 164 (573)
Q Consensus 150 ~s~d~~~~~l~~w~k 164 (573)
+|+|+| .+|++
T Consensus 2 ~S~D~G----~TW~~ 12 (12)
T PF02012_consen 2 YSTDGG----KTWKK 12 (12)
T ss_dssp EESSTT----SS-EE
T ss_pred EeCCCc----ccCcC
Confidence 577765 78874
No 98
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.75 E-value=70 Score=27.28 Aligned_cols=18 Identities=39% Similarity=0.347 Sum_probs=9.8
Q ss_pred Ccch-hHHHHHHHHHHHhh
Q 008242 1 MANF-YLSLFLFFALFLGH 18 (573)
Q Consensus 1 ~~~~-~~~~~~~~~~~~~~ 18 (573)
|||= ||-|.||+|++|+|
T Consensus 1 MaSK~~llL~l~LA~lLli 19 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLI 19 (95)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 5543 55555566665555
Done!