BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008243
         (573 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2RCD|A Chain A, Crystal Structure Of A Protein With Unknown Function From
           Duf3225 Family (Eca3500) From Pectobacterium
           Atrosepticum Scri1043 At 2.32 A Resolution
 pdb|2RCD|B Chain B, Crystal Structure Of A Protein With Unknown Function From
           Duf3225 Family (Eca3500) From Pectobacterium
           Atrosepticum Scri1043 At 2.32 A Resolution
 pdb|2RCD|C Chain C, Crystal Structure Of A Protein With Unknown Function From
           Duf3225 Family (Eca3500) From Pectobacterium
           Atrosepticum Scri1043 At 2.32 A Resolution
 pdb|2RCD|D Chain D, Crystal Structure Of A Protein With Unknown Function From
           Duf3225 Family (Eca3500) From Pectobacterium
           Atrosepticum Scri1043 At 2.32 A Resolution
          Length = 129

 Score = 31.2 bits (69), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 29/53 (54%)

Query: 55  RFTSTDNVDGPTGVPVFRVQRDGGKLDRDIWSSRNAQFYHGCSIASSKFAKAG 107
           R+ + +N+ G   +  FR+ R    LDR + ++    + H  ++AS++F + G
Sbjct: 47  RYGAGENLYGIEEIRAFRLARPSAGLDRALRNTVITTYGHDXAVASTEFTRTG 99


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,098,464
Number of Sequences: 62578
Number of extensions: 657952
Number of successful extensions: 1279
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1278
Number of HSP's gapped (non-prelim): 1
length of query: 573
length of database: 14,973,337
effective HSP length: 104
effective length of query: 469
effective length of database: 8,465,225
effective search space: 3970190525
effective search space used: 3970190525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)