BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008243
         (573 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
           GN=At1g04910 PE=1 SV=1
          Length = 519

 Score =  270 bits (691), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 162/432 (37%), Positives = 242/432 (56%), Gaps = 15/432 (3%)

Query: 83  DIWSSRNAQFYHGCSIASSKFAKAGDVTHSNRYLAIVTSGGLNQQRTGIIDAVVAARILN 142
           ++W S  +  +   S   S +        +N YL +  +GGLNQQR+ I +AV+AARI+N
Sbjct: 61  ELWESAKSGGWRPSSAPRSDWPPP--TKETNGYLRVRCNGGLNQQRSAICNAVLAARIMN 118

Query: 143 ATLVIPKLDQKSFWKDASDFSEIFDVDRFISVLSKDVKIIKQIP--RKGGKS--LTPYHM 198
           ATLV+P+LD  SFW D S F  I+DV+ FI  L  DVKI+ +IP   K GK+  +  + +
Sbjct: 119 ATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPDVHKNGKTKKIKAFQI 178

Query: 199 RVPRKCNEKCYQNRVLPVLLKRHAVQLSKFDYRLANKLDT-DLQKLRCRVNYHALSFTDS 257
           R PR    + Y    L  + +  A+ L+ F +RLA ++D  + Q+LRCRVNYHAL F   
Sbjct: 179 RPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPH 238

Query: 258 IQKMGEKLVHQMRMKGKHYIALHLRFEPDMLAFSGCYYGGGDKERKELGAIRKRWKTLHI 317
           I K+ E +V ++R +G H++++HLRFE DMLAF+GC+     +E+K L   RK       
Sbjct: 239 IMKLSESIVDKLRSQG-HFMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRKENFADKR 297

Query: 318 SNPDKERRHGKCPLTPLEVGLMLRALGYGSDVHIYVASGEVYGGEETLAPLKALFPNFYS 377
              ++ R  GKCPLTP EVGL+LRA+ + +   IY+A+GE++GGE+ + P + LFP   +
Sbjct: 298 LIYNERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRLDN 357

Query: 378 KETIASKELEPFSSFSSRMAALDFIVCDESDIFVTNNNG--NMAKILAGRRKYFGHKPTI 435
             ++   E    +S     +A+D++VC  SDIF+   +G  N A  L G R Y+G + TI
Sbjct: 358 HSSVDPSEELSATSQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTI 417

Query: 436 RPNAKKLYRLFLNQTSTTWDTFASKVRS--YQRGFMGEPNEVRPGRGEFHENP-ATCICE 492
           RP+ K L  +F+ +       F   VR    +  F G    V P    F+ N    C C+
Sbjct: 418 RPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVSP--ESFYTNSWPECFCQ 475

Query: 493 DSEARTKKDSVP 504
            +  ++     P
Sbjct: 476 MNPKKSSDKCPP 487


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.136    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 225,431,889
Number of Sequences: 539616
Number of extensions: 10105005
Number of successful extensions: 39036
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 37624
Number of HSP's gapped (non-prelim): 798
length of query: 573
length of database: 191,569,459
effective HSP length: 123
effective length of query: 450
effective length of database: 125,196,691
effective search space: 56338510950
effective search space used: 56338510950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)