Query 008244
Match_columns 573
No_of_seqs 430 out of 2970
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 21:20:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0154 GatA Asp-tRNAAsn/Glu-t 100.0 1.7E-89 3.7E-94 711.6 36.0 419 8-443 4-469 (475)
2 PLN02722 indole-3-acetamide am 100.0 1.2E-88 2.5E-93 700.2 39.4 405 30-439 3-420 (422)
3 PRK09201 amidase; Provisional 100.0 2E-87 4.4E-92 703.9 34.8 410 9-440 5-454 (465)
4 TIGR02715 amido_AtzE amidohydr 100.0 2.4E-87 5.2E-92 701.7 34.0 390 29-440 29-447 (452)
5 PRK05962 amidase; Validated 100.0 5.8E-87 1.3E-91 692.4 35.2 397 29-443 10-423 (424)
6 PRK07487 amidase; Provisional 100.0 1.2E-86 2.5E-91 698.9 35.3 416 7-441 4-457 (469)
7 PRK06102 hypothetical protein; 100.0 9.7E-87 2.1E-91 696.3 34.5 415 10-442 5-450 (452)
8 PRK06169 putative amidase; Pro 100.0 9E-87 1.9E-91 700.0 33.1 414 7-441 3-456 (466)
9 PRK08310 amidase; Provisional 100.0 8.8E-86 1.9E-90 677.3 39.3 388 31-440 4-393 (395)
10 PRK07056 amidase; Provisional 100.0 2.9E-86 6.4E-91 693.1 34.9 413 12-442 7-452 (454)
11 PRK07486 amidase; Provisional 100.0 1.4E-85 3E-90 694.3 34.5 420 4-441 5-471 (484)
12 PRK07042 amidase; Provisional 100.0 1.6E-85 3.6E-90 690.1 33.5 412 7-441 3-452 (464)
13 PRK06170 amidase; Provisional 100.0 2.1E-85 4.5E-90 694.8 33.9 419 4-441 5-482 (490)
14 PRK07235 amidase; Provisional 100.0 1.6E-84 3.4E-89 684.0 40.2 400 29-440 53-500 (502)
15 PRK12470 amidase; Provisional 100.0 1.7E-85 3.6E-90 688.0 32.2 412 7-440 5-451 (462)
16 PRK07488 indole acetimide hydr 100.0 9.6E-85 2.1E-89 685.7 34.8 414 6-441 6-465 (472)
17 PRK06061 amidase; Provisional 100.0 5.6E-85 1.2E-89 687.8 32.8 416 3-441 10-468 (483)
18 TIGR00132 gatA glutamyl-tRNA(G 100.0 2.9E-85 6.2E-90 689.0 30.1 395 29-439 25-459 (460)
19 PRK06529 amidase; Provisional 100.0 3.8E-84 8.2E-89 683.0 34.4 411 12-440 5-477 (482)
20 PRK00012 gatA aspartyl/glutamy 100.0 1.8E-84 3.8E-89 682.9 31.0 394 29-438 21-459 (459)
21 PRK07869 amidase; Provisional 100.0 3E-84 6.5E-89 682.0 31.6 415 6-440 10-461 (468)
22 PRK08186 allophanate hydrolase 100.0 1E-83 2.3E-88 687.7 32.9 410 12-442 8-449 (600)
23 PRK08137 amidase; Provisional 100.0 4.1E-83 8.8E-88 677.6 33.8 405 8-441 3-483 (497)
24 PRK07139 amidase; Provisional 100.0 5.1E-82 1.1E-86 656.7 38.1 394 25-442 11-434 (439)
25 TIGR02713 allophanate_hyd allo 100.0 2.4E-82 5.2E-87 670.0 33.4 368 54-441 28-411 (561)
26 PRK06828 amidase; Provisional 100.0 8.1E-79 1.8E-83 637.2 32.8 387 12-440 14-481 (491)
27 PF01425 Amidase: Amidase; In 100.0 1.2E-80 2.7E-85 658.9 17.6 384 29-431 12-441 (441)
28 PRK11910 amidase; Provisional 100.0 6.7E-77 1.4E-81 622.0 31.5 391 6-442 160-607 (615)
29 PRK06707 amidase; Provisional 100.0 3.6E-75 7.8E-80 612.2 31.3 383 11-441 71-528 (536)
30 PRK06565 amidase; Validated 100.0 5.9E-73 1.3E-77 588.3 25.4 418 11-443 7-556 (566)
31 KOG1211 Amidases [Translation, 100.0 2.5E-67 5.5E-72 529.0 21.6 399 29-439 46-493 (506)
32 KOG1212 Amidases [Translation, 100.0 2.4E-62 5.3E-67 497.4 26.1 414 7-444 51-554 (560)
33 KOG0553 TPR repeat-containing 99.7 4.3E-17 9.4E-22 152.9 10.9 107 459-565 76-183 (304)
34 KOG0548 Molecular co-chaperone 99.6 3.3E-14 7.1E-19 142.7 15.2 130 428-566 331-461 (539)
35 KOG4234 TPR repeat-containing 99.5 7.8E-13 1.7E-17 116.4 12.3 104 462-565 93-202 (271)
36 KOG0547 Translocase of outer m 99.4 3.6E-13 7.7E-18 133.3 9.2 93 462-554 113-206 (606)
37 KOG4648 Uncharacterized conser 99.4 4.5E-13 9.8E-18 127.0 8.1 103 464-566 97-200 (536)
38 PF13414 TPR_11: TPR repeat; P 99.4 2.5E-12 5.4E-17 98.2 7.8 67 463-529 2-69 (69)
39 KOG0550 Molecular chaperone (D 99.3 6.3E-12 1.4E-16 122.3 9.8 106 458-563 243-353 (486)
40 KOG0543 FKBP-type peptidyl-pro 99.3 1.3E-11 2.9E-16 121.0 10.9 104 463-566 207-326 (397)
41 PRK15359 type III secretion sy 99.3 2.9E-11 6.2E-16 106.7 11.2 100 467-566 27-127 (144)
42 PRK15363 pathogenicity island 99.2 6.8E-11 1.5E-15 102.6 10.2 102 461-562 32-134 (157)
43 PLN03088 SGT1, suppressor of 99.2 5E-11 1.1E-15 121.5 10.8 103 465-567 3-106 (356)
44 KOG0548 Molecular co-chaperone 99.2 5.7E-11 1.2E-15 119.7 8.7 102 464-565 2-104 (539)
45 PRK11189 lipoprotein NlpI; Pro 99.2 4.3E-10 9.3E-15 112.0 14.2 104 461-564 61-165 (296)
46 KOG4642 Chaperone-dependent E3 99.1 7.6E-11 1.6E-15 107.0 7.1 100 461-560 7-107 (284)
47 PRK15359 type III secretion sy 99.1 1.2E-09 2.6E-14 96.4 13.3 86 460-545 54-140 (144)
48 TIGR02552 LcrH_SycD type III s 99.1 8E-10 1.7E-14 96.6 11.5 108 459-566 12-120 (135)
49 KOG4626 O-linked N-acetylgluco 99.1 3.4E-10 7.5E-15 115.3 10.2 107 460-566 384-491 (966)
50 PRK10370 formate-dependent nit 99.1 1.7E-09 3.7E-14 100.6 13.8 105 460-564 69-177 (198)
51 KOG4626 O-linked N-acetylgluco 99.1 2.2E-10 4.7E-15 116.7 7.8 104 462-565 284-388 (966)
52 KOG0551 Hsp90 co-chaperone CNS 99.1 1.1E-09 2.4E-14 104.1 11.3 97 462-558 79-180 (390)
53 PF13432 TPR_16: Tetratricopep 99.0 9.8E-10 2.1E-14 82.6 7.6 64 468-531 1-64 (65)
54 KOG0553 TPR repeat-containing 99.0 3.2E-09 7E-14 100.4 11.6 94 432-534 92-185 (304)
55 TIGR00990 3a0801s09 mitochondr 99.0 2.3E-09 5.1E-14 118.3 12.3 98 462-560 125-223 (615)
56 KOG0545 Aryl-hydrocarbon recep 99.0 1.7E-09 3.7E-14 98.6 9.0 104 461-564 175-297 (329)
57 KOG0624 dsRNA-activated protei 99.0 2.1E-09 4.5E-14 102.5 9.0 107 457-563 31-138 (504)
58 KOG0376 Serine-threonine phosp 98.9 6.6E-10 1.4E-14 111.3 4.9 101 463-563 3-104 (476)
59 PRK11189 lipoprotein NlpI; Pro 98.9 1.1E-08 2.4E-13 101.9 12.8 100 460-559 94-193 (296)
60 KOG1125 TPR repeat-containing 98.9 5E-09 1.1E-13 106.8 9.8 129 422-564 402-531 (579)
61 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 6.8E-09 1.5E-13 104.6 10.7 78 454-531 65-146 (453)
62 KOG4555 TPR repeat-containing 98.9 9.6E-09 2.1E-13 84.5 9.3 102 463-564 42-148 (175)
63 cd00189 TPR Tetratricopeptide 98.9 3.9E-08 8.5E-13 78.7 12.1 97 466-562 2-99 (100)
64 COG3063 PilF Tfp pilus assembl 98.9 2.8E-08 6E-13 90.5 11.6 102 458-559 29-131 (250)
65 TIGR00990 3a0801s09 mitochondr 98.8 2.5E-08 5.5E-13 110.1 13.7 103 461-563 396-499 (615)
66 KOG1126 DNA-binding cell divis 98.8 8.7E-09 1.9E-13 106.7 8.7 103 460-562 485-588 (638)
67 TIGR02795 tol_pal_ybgF tol-pal 98.8 3.9E-08 8.5E-13 83.5 11.5 101 464-564 2-109 (119)
68 PRK15363 pathogenicity island 98.8 3.7E-08 8E-13 85.7 10.5 81 459-539 64-147 (157)
69 PRK02603 photosystem I assembl 98.8 5.6E-08 1.2E-12 88.7 12.4 105 459-563 30-152 (172)
70 PRK09782 bacteriophage N4 rece 98.8 6.8E-08 1.5E-12 109.8 15.0 103 461-563 640-743 (987)
71 PF13371 TPR_9: Tetratricopept 98.8 3.4E-08 7.4E-13 76.0 8.5 62 471-532 2-63 (73)
72 PRK12370 invasion protein regu 98.8 7.2E-08 1.6E-12 104.8 14.1 101 461-561 335-436 (553)
73 KOG1126 DNA-binding cell divis 98.8 4.8E-09 1E-13 108.6 4.6 105 460-564 417-556 (638)
74 PF13414 TPR_11: TPR repeat; P 98.7 3.3E-08 7.1E-13 75.2 7.4 67 496-562 1-69 (69)
75 PRK09782 bacteriophage N4 rece 98.7 1E-07 2.2E-12 108.4 14.5 102 464-565 609-711 (987)
76 KOG0543 FKBP-type peptidyl-pro 98.7 1E-07 2.2E-12 94.1 12.5 97 464-560 257-355 (397)
77 PF12895 Apc3: Anaphase-promot 98.7 2.8E-08 6.1E-13 78.8 7.1 81 476-557 1-84 (84)
78 CHL00033 ycf3 photosystem I as 98.7 1.9E-07 4.2E-12 84.8 13.2 105 459-563 30-152 (168)
79 PLN03088 SGT1, suppressor of 98.7 1.8E-07 3.9E-12 95.5 14.0 83 462-544 34-117 (356)
80 PRK12370 invasion protein regu 98.7 1.3E-07 2.8E-12 102.8 13.7 106 461-566 292-407 (553)
81 PLN02789 farnesyltranstransfer 98.7 1.9E-07 4.1E-12 93.2 13.6 105 459-563 66-174 (320)
82 PF14559 TPR_19: Tetratricopep 98.7 7.6E-08 1.6E-12 72.9 7.4 59 474-532 1-59 (68)
83 KOG1155 Anaphase-promoting com 98.6 4.2E-07 9.1E-12 90.5 13.4 103 460-562 360-463 (559)
84 PRK15179 Vi polysaccharide bio 98.6 2.6E-07 5.7E-12 101.2 13.2 103 460-562 116-219 (694)
85 TIGR02552 LcrH_SycD type III s 98.6 5.9E-07 1.3E-11 78.3 12.8 73 461-533 48-120 (135)
86 TIGR03302 OM_YfiO outer membra 98.6 4.7E-07 1E-11 87.2 13.3 106 459-564 28-148 (235)
87 PRK15331 chaperone protein Sic 98.6 5.1E-07 1.1E-11 78.9 11.8 127 427-559 6-133 (165)
88 KOG4234 TPR repeat-containing 98.6 6.3E-07 1.4E-11 79.7 12.3 92 437-532 111-202 (271)
89 TIGR02521 type_IV_pilW type IV 98.6 5.2E-07 1.1E-11 85.8 13.1 105 460-564 61-168 (234)
90 KOG0547 Translocase of outer m 98.6 1.9E-07 4.1E-12 93.4 9.3 96 467-562 363-459 (606)
91 KOG1308 Hsp70-interacting prot 98.6 1.5E-08 3.2E-13 97.2 1.1 98 464-561 114-212 (377)
92 PF13424 TPR_12: Tetratricopep 98.5 2.5E-07 5.5E-12 72.1 7.2 68 461-528 2-76 (78)
93 PRK15174 Vi polysaccharide exp 98.5 7.3E-07 1.6E-11 98.7 13.4 105 461-565 281-386 (656)
94 KOG0550 Molecular chaperone (D 98.5 1.4E-07 3E-12 92.6 6.3 100 456-555 41-141 (486)
95 PRK15179 Vi polysaccharide bio 98.5 5.9E-07 1.3E-11 98.4 11.8 102 461-562 83-185 (694)
96 PRK15174 Vi polysaccharide exp 98.5 9.8E-07 2.1E-11 97.7 13.4 104 461-564 243-351 (656)
97 COG5010 TadD Flp pilus assembl 98.5 9.9E-07 2.2E-11 82.2 10.8 104 459-562 95-199 (257)
98 TIGR02521 type_IV_pilW type IV 98.5 2.3E-06 5.1E-11 81.3 13.5 103 461-563 96-201 (234)
99 PLN02789 farnesyltranstransfer 98.5 3.1E-06 6.8E-11 84.5 14.6 104 460-563 102-215 (320)
100 COG4235 Cytochrome c biogenesi 98.5 3.2E-06 6.9E-11 80.9 13.5 123 426-564 134-260 (287)
101 PRK10803 tol-pal system protei 98.4 2E-06 4.2E-11 83.4 12.2 98 465-562 143-248 (263)
102 PRK10370 formate-dependent nit 98.4 6.5E-07 1.4E-11 83.3 8.5 91 477-567 52-146 (198)
103 TIGR03302 OM_YfiO outer membra 98.4 1.7E-06 3.6E-11 83.4 11.4 106 459-564 65-199 (235)
104 KOG1125 TPR repeat-containing 98.4 7.3E-07 1.6E-11 91.3 7.3 93 429-530 438-530 (579)
105 PF13512 TPR_18: Tetratricopep 98.4 1.3E-05 2.7E-10 68.8 13.6 100 463-562 9-130 (142)
106 TIGR02795 tol_pal_ybgF tol-pal 98.4 2.8E-06 6.1E-11 71.9 9.9 71 462-532 37-110 (119)
107 PRK10049 pgaA outer membrane p 98.4 3.7E-06 8.1E-11 95.0 13.4 102 463-564 48-149 (765)
108 COG3063 PilF Tfp pilus assembl 98.3 2.8E-06 6.2E-11 77.6 9.7 103 460-563 65-171 (250)
109 KOG1155 Anaphase-promoting com 98.3 7.7E-06 1.7E-10 81.7 12.7 103 457-559 391-494 (559)
110 PRK10049 pgaA outer membrane p 98.3 1E-05 2.2E-10 91.5 15.6 103 462-564 357-460 (765)
111 KOG3060 Uncharacterized conser 98.3 2.3E-05 5E-10 72.6 14.7 124 430-562 95-222 (289)
112 PRK11788 tetratricopeptide rep 98.3 8E-06 1.7E-10 85.0 13.6 100 464-563 180-281 (389)
113 PRK11447 cellulose synthase su 98.3 5E-06 1.1E-10 98.4 13.2 104 460-563 599-703 (1157)
114 PRK11447 cellulose synthase su 98.3 5.1E-06 1.1E-10 98.4 13.2 103 462-564 301-418 (1157)
115 PF12895 Apc3: Anaphase-promot 98.3 3.4E-06 7.5E-11 66.7 8.1 61 463-524 24-84 (84)
116 KOG0624 dsRNA-activated protei 98.3 9.1E-06 2E-10 78.2 11.7 100 466-565 157-257 (504)
117 PRK11788 tetratricopeptide rep 98.3 1.1E-05 2.4E-10 83.8 13.5 103 462-564 212-315 (389)
118 PF00515 TPR_1: Tetratricopept 98.2 2.2E-06 4.7E-11 54.8 4.9 34 498-531 1-34 (34)
119 KOG2076 RNA polymerase III tra 98.2 1.2E-05 2.6E-10 86.4 13.1 109 455-563 164-273 (895)
120 PF06552 TOM20_plant: Plant sp 98.2 2E-05 4.2E-10 69.7 11.9 77 461-537 22-119 (186)
121 PRK10153 DNA-binding transcrip 98.2 1.6E-05 3.4E-10 84.8 13.7 103 463-565 338-487 (517)
122 COG4785 NlpI Lipoprotein NlpI, 98.2 3.1E-06 6.6E-11 76.4 6.4 105 459-563 60-165 (297)
123 cd05804 StaR_like StaR_like; a 98.2 1.2E-05 2.5E-10 82.7 11.8 104 459-562 109-217 (355)
124 PF09976 TPR_21: Tetratricopep 98.2 1.6E-05 3.5E-10 70.2 10.7 98 459-558 43-145 (145)
125 KOG1173 Anaphase-promoting com 98.2 4.5E-06 9.8E-11 85.3 8.0 103 461-563 411-521 (611)
126 PRK02603 photosystem I assembl 98.2 2.2E-05 4.8E-10 71.5 11.7 69 463-531 71-153 (172)
127 PF13431 TPR_17: Tetratricopep 98.2 2E-06 4.2E-11 54.8 3.3 34 486-519 1-34 (34)
128 PF13429 TPR_15: Tetratricopep 98.2 6.4E-06 1.4E-10 81.6 8.7 101 462-562 144-245 (280)
129 PRK10866 outer membrane biogen 98.2 3.4E-05 7.3E-10 74.2 13.2 80 462-541 30-116 (243)
130 PF12688 TPR_5: Tetratrico pep 98.1 2.9E-05 6.3E-10 65.4 11.0 93 465-557 2-101 (120)
131 cd00189 TPR Tetratricopeptide 98.1 3.3E-05 7.2E-10 61.3 10.4 67 464-530 34-100 (100)
132 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 6.8E-06 1.5E-10 83.3 7.6 69 493-561 70-142 (453)
133 PRK14574 hmsH outer membrane p 98.1 2.5E-05 5.5E-10 87.4 12.3 105 462-566 100-204 (822)
134 PF13525 YfiO: Outer membrane 98.1 8.3E-05 1.8E-09 69.7 13.9 101 462-562 3-121 (203)
135 TIGR02917 PEP_TPR_lipo putativ 98.1 2.5E-05 5.5E-10 90.0 12.7 105 460-564 155-260 (899)
136 KOG2076 RNA polymerase III tra 98.1 6.5E-05 1.4E-09 81.0 14.3 100 460-559 203-308 (895)
137 TIGR02917 PEP_TPR_lipo putativ 98.1 3.3E-05 7.1E-10 89.1 13.4 102 461-563 767-869 (899)
138 PF13429 TPR_15: Tetratricopep 98.1 1.2E-05 2.6E-10 79.6 8.4 100 461-560 177-277 (280)
139 KOG4162 Predicted calmodulin-b 98.0 3.1E-05 6.8E-10 82.0 11.0 112 461-572 681-795 (799)
140 KOG1173 Anaphase-promoting com 98.0 2.2E-05 4.8E-10 80.4 9.4 70 462-531 453-522 (611)
141 COG4783 Putative Zn-dependent 98.0 5.6E-05 1.2E-09 76.5 11.9 97 459-555 335-432 (484)
142 PF13432 TPR_16: Tetratricopep 98.0 1.3E-05 2.8E-10 59.9 5.4 62 502-563 1-63 (65)
143 KOG1310 WD40 repeat protein [G 98.0 2.2E-05 4.7E-10 79.5 8.2 104 459-562 369-476 (758)
144 PF07719 TPR_2: Tetratricopept 98.0 1.8E-05 4E-10 50.4 5.1 34 498-531 1-34 (34)
145 CHL00033 ycf3 photosystem I as 97.9 7.7E-05 1.7E-09 67.7 10.6 70 462-531 70-153 (168)
146 COG5010 TadD Flp pilus assembl 97.9 0.00015 3.3E-09 67.9 12.2 96 461-556 131-227 (257)
147 PRK15331 chaperone protein Sic 97.9 4.3E-05 9.4E-10 67.0 8.1 79 462-541 69-147 (165)
148 PRK10803 tol-pal system protei 97.9 0.00012 2.6E-09 71.0 12.0 74 459-532 175-251 (263)
149 COG1729 Uncharacterized protei 97.9 0.00013 2.8E-09 69.2 11.6 96 467-562 144-246 (262)
150 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00031 6.7E-09 71.8 14.2 97 466-562 202-299 (395)
151 KOG2002 TPR-containing nuclear 97.8 9.8E-05 2.1E-09 80.2 10.9 104 461-564 161-269 (1018)
152 PF06552 TOM20_plant: Plant sp 97.8 0.00014 2.9E-09 64.5 9.6 85 480-564 7-113 (186)
153 PRK14574 hmsH outer membrane p 97.8 8.8E-05 1.9E-09 83.2 10.4 96 469-564 73-169 (822)
154 PF13428 TPR_14: Tetratricopep 97.8 4.9E-05 1.1E-09 51.7 5.2 42 465-506 2-43 (44)
155 PRK11906 transcriptional regul 97.8 0.00038 8.3E-09 71.0 13.4 83 480-562 320-403 (458)
156 PRK10153 DNA-binding transcrip 97.8 0.00015 3.2E-09 77.4 10.8 88 464-552 420-509 (517)
157 COG4783 Putative Zn-dependent 97.8 0.00021 4.5E-09 72.5 11.0 104 462-565 304-408 (484)
158 KOG1129 TPR repeat-containing 97.7 0.0016 3.4E-08 62.8 15.9 102 464-566 223-325 (478)
159 KOG1128 Uncharacterized conser 97.7 0.00011 2.5E-09 77.5 8.6 62 470-531 491-552 (777)
160 PF00515 TPR_1: Tetratricopept 97.7 6.6E-05 1.4E-09 47.8 4.4 34 464-497 1-34 (34)
161 PF12688 TPR_5: Tetratrico pep 97.7 0.00065 1.4E-08 57.3 11.6 97 430-526 4-103 (120)
162 KOG2002 TPR-containing nuclear 97.7 9.2E-05 2E-09 80.4 7.8 106 461-566 267-377 (1018)
163 PF07719 TPR_2: Tetratricopept 97.7 0.00011 2.4E-09 46.7 5.1 34 464-497 1-34 (34)
164 PF13512 TPR_18: Tetratricopep 97.7 0.0004 8.6E-09 59.7 9.9 71 462-532 45-133 (142)
165 KOG4648 Uncharacterized conser 97.7 0.00016 3.5E-09 69.8 8.2 75 458-532 125-199 (536)
166 KOG1128 Uncharacterized conser 97.7 0.00015 3.2E-09 76.6 8.7 110 460-569 515-625 (777)
167 PF13424 TPR_12: Tetratricopep 97.7 6.4E-05 1.4E-09 58.4 4.5 65 496-560 3-75 (78)
168 cd05804 StaR_like StaR_like; a 97.6 0.00056 1.2E-08 70.1 12.8 101 463-563 42-180 (355)
169 KOG3060 Uncharacterized conser 97.6 0.00046 9.9E-09 64.2 10.6 70 462-531 152-224 (289)
170 KOG1129 TPR repeat-containing 97.6 8.1E-05 1.8E-09 71.4 5.7 103 467-569 361-467 (478)
171 KOG2003 TPR repeat-containing 97.6 0.0001 2.2E-09 73.4 6.4 102 461-562 487-589 (840)
172 PRK10747 putative protoheme IX 97.6 0.00044 9.5E-09 72.1 11.5 85 476-560 306-390 (398)
173 COG2956 Predicted N-acetylgluc 97.6 0.00095 2.1E-08 64.3 12.5 108 456-563 172-281 (389)
174 KOG1840 Kinesin light chain [C 97.6 0.00059 1.3E-08 71.8 12.0 109 458-566 277-402 (508)
175 KOG1840 Kinesin light chain [C 97.6 0.00072 1.6E-08 71.2 12.4 103 458-560 235-354 (508)
176 COG2956 Predicted N-acetylgluc 97.6 0.0017 3.6E-08 62.6 13.3 107 459-565 209-316 (389)
177 PF12569 NARP1: NMDA receptor- 97.6 0.0018 4E-08 68.8 15.1 92 465-556 195-287 (517)
178 PF13181 TPR_8: Tetratricopept 97.5 0.00019 4.2E-09 45.6 4.4 33 499-531 2-34 (34)
179 PF13371 TPR_9: Tetratricopept 97.5 0.00026 5.6E-09 54.1 5.9 61 505-565 2-63 (73)
180 TIGR00540 hemY_coli hemY prote 97.5 0.00065 1.4E-08 71.1 10.6 87 474-560 309-399 (409)
181 PF09976 TPR_21: Tetratricopep 97.4 0.0028 6.1E-08 55.8 12.6 95 462-556 9-110 (145)
182 KOG1130 Predicted G-alpha GTPa 97.4 0.00018 3.9E-09 71.0 5.3 98 463-560 194-304 (639)
183 PF12968 DUF3856: Domain of Un 97.4 0.0036 7.7E-08 51.2 11.7 92 468-559 13-128 (144)
184 KOG0545 Aryl-hydrocarbon recep 97.4 0.0031 6.8E-08 58.4 12.7 73 460-532 226-298 (329)
185 PRK14720 transcript cleavage f 97.4 0.0018 3.8E-08 72.4 13.3 96 461-559 62-177 (906)
186 PRK11906 transcriptional regul 97.4 0.0011 2.3E-08 67.8 10.4 98 461-558 335-434 (458)
187 PF13428 TPR_14: Tetratricopep 97.4 0.0004 8.6E-09 47.2 5.0 41 498-538 1-42 (44)
188 KOG1174 Anaphase-promoting com 97.4 0.0041 8.8E-08 61.9 13.5 84 481-564 421-504 (564)
189 KOG1127 TPR repeat-containing 97.3 0.0005 1.1E-08 75.0 7.7 95 464-558 562-657 (1238)
190 KOG2003 TPR repeat-containing 97.3 0.0023 5E-08 64.0 11.3 102 462-563 522-624 (840)
191 COG4235 Cytochrome c biogenesi 97.3 0.00091 2E-08 64.3 8.3 85 480-564 138-226 (287)
192 PRK10866 outer membrane biogen 97.3 0.0063 1.4E-07 58.6 14.2 73 459-531 64-157 (243)
193 TIGR00540 hemY_coli hemY prote 97.3 0.0045 9.7E-08 64.8 14.2 91 468-558 122-214 (409)
194 COG4105 ComL DNA uptake lipopr 97.3 0.0051 1.1E-07 58.0 12.7 97 462-558 32-143 (254)
195 PRK10747 putative protoheme IX 97.3 0.0067 1.5E-07 63.2 15.1 95 467-561 121-217 (398)
196 COG4700 Uncharacterized protei 97.3 0.0044 9.5E-08 55.1 11.3 99 464-562 89-191 (251)
197 PF13525 YfiO: Outer membrane 97.2 0.0052 1.1E-07 57.5 12.1 71 461-531 39-123 (203)
198 PF14938 SNAP: Soluble NSF att 97.2 0.0033 7.3E-08 62.1 11.1 103 462-564 112-229 (282)
199 COG1729 Uncharacterized protei 97.1 0.0054 1.2E-07 58.4 11.5 113 412-532 134-249 (262)
200 KOG0376 Serine-threonine phosp 97.1 0.00095 2.1E-08 67.8 6.7 74 461-534 35-108 (476)
201 KOG4555 TPR repeat-containing 97.1 0.0056 1.2E-07 51.1 10.0 71 461-531 74-148 (175)
202 KOG1174 Anaphase-promoting com 97.1 0.0031 6.7E-08 62.7 10.0 67 464-530 300-366 (564)
203 PF14938 SNAP: Soluble NSF att 97.1 0.0022 4.7E-08 63.5 9.0 97 462-559 73-183 (282)
204 KOG4162 Predicted calmodulin-b 97.1 0.004 8.6E-08 66.6 11.1 74 459-532 713-788 (799)
205 PF09295 ChAPs: ChAPs (Chs5p-A 97.1 0.0014 3E-08 67.2 7.5 64 461-524 231-294 (395)
206 KOG1156 N-terminal acetyltrans 97.1 0.0036 7.9E-08 65.6 10.3 89 467-555 78-167 (700)
207 PF15015 NYD-SP12_N: Spermatog 97.1 0.0051 1.1E-07 61.3 10.8 93 463-555 175-286 (569)
208 PF14559 TPR_19: Tetratricopep 97.0 0.0017 3.6E-08 48.7 5.8 57 508-564 1-58 (68)
209 KOG1127 TPR repeat-containing 97.0 0.0034 7.4E-08 68.8 10.0 97 466-562 4-105 (1238)
210 PF14853 Fis1_TPR_C: Fis1 C-te 97.0 0.0048 1E-07 43.4 7.4 34 499-532 2-35 (53)
211 PF12569 NARP1: NMDA receptor- 97.0 0.0085 1.8E-07 63.8 12.8 76 463-538 3-78 (517)
212 COG4785 NlpI Lipoprotein NlpI, 97.0 0.002 4.4E-08 58.6 6.8 80 453-532 88-167 (297)
213 PRK14720 transcript cleavage f 97.0 0.0033 7.1E-08 70.3 9.6 102 460-563 27-148 (906)
214 PF03704 BTAD: Bacterial trans 96.9 0.021 4.6E-07 50.2 12.7 93 464-556 6-121 (146)
215 PF13181 TPR_8: Tetratricopept 96.9 0.0021 4.6E-08 40.7 4.6 34 464-497 1-34 (34)
216 PRK10941 hypothetical protein; 96.8 0.017 3.6E-07 56.2 11.9 68 465-532 182-249 (269)
217 KOG0495 HAT repeat protein [RN 96.8 0.012 2.7E-07 61.8 11.1 101 464-564 651-752 (913)
218 KOG3785 Uncharacterized conser 96.8 0.0039 8.5E-08 60.7 7.1 107 463-571 58-191 (557)
219 KOG1156 N-terminal acetyltrans 96.7 0.0073 1.6E-07 63.4 9.5 106 459-564 36-142 (700)
220 PF04733 Coatomer_E: Coatomer 96.7 0.0057 1.2E-07 60.5 8.3 66 479-544 182-248 (290)
221 PF13176 TPR_7: Tetratricopept 96.7 0.0034 7.3E-08 40.4 4.4 29 500-528 1-29 (36)
222 smart00028 TPR Tetratricopepti 96.7 0.0025 5.3E-08 39.1 3.6 32 499-530 2-33 (34)
223 PF13174 TPR_6: Tetratricopept 96.7 0.0034 7.4E-08 39.3 4.2 32 500-531 2-33 (33)
224 KOG4340 Uncharacterized conser 96.6 0.0028 6.2E-08 60.3 5.1 66 462-527 142-207 (459)
225 PF03704 BTAD: Bacterial trans 96.6 0.018 3.9E-07 50.6 10.1 63 464-526 62-124 (146)
226 KOG0551 Hsp90 co-chaperone CNS 96.6 0.0055 1.2E-07 59.3 6.9 72 459-530 114-185 (390)
227 KOG4340 Uncharacterized conser 96.6 0.01 2.2E-07 56.6 8.3 85 473-557 19-104 (459)
228 KOG1308 Hsp70-interacting prot 96.5 0.0017 3.7E-08 63.1 3.1 78 453-530 137-214 (377)
229 KOG4642 Chaperone-dependent E3 96.5 0.0091 2E-07 55.3 7.2 68 460-527 40-107 (284)
230 KOG3824 Huntingtin interacting 96.4 0.016 3.5E-07 55.5 8.8 79 461-539 113-192 (472)
231 KOG2796 Uncharacterized conser 96.4 0.0073 1.6E-07 56.7 6.3 69 463-531 251-319 (366)
232 KOG1130 Predicted G-alpha GTPa 96.4 0.016 3.5E-07 57.7 9.0 100 464-563 235-347 (639)
233 PF13176 TPR_7: Tetratricopept 96.3 0.0092 2E-07 38.4 4.5 28 466-493 1-28 (36)
234 PF10579 Rapsyn_N: Rapsyn N-te 96.3 0.04 8.7E-07 41.8 8.4 66 462-527 4-72 (80)
235 PF04733 Coatomer_E: Coatomer 96.2 0.023 4.9E-07 56.2 9.0 112 422-536 158-274 (290)
236 KOG4814 Uncharacterized conser 96.2 0.068 1.5E-06 56.2 12.4 91 466-556 356-453 (872)
237 KOG1586 Protein required for f 96.1 0.18 4E-06 46.8 13.6 99 459-558 69-181 (288)
238 COG4976 Predicted methyltransf 96.1 0.008 1.7E-07 55.3 4.8 59 473-531 4-62 (287)
239 PF14561 TPR_20: Tetratricopep 96.1 0.045 9.8E-07 43.5 8.5 64 483-546 7-73 (90)
240 KOG2376 Signal recognition par 96.1 0.056 1.2E-06 56.5 11.3 93 462-561 44-140 (652)
241 PF10300 DUF3808: Protein of u 96.0 0.033 7.2E-07 59.1 9.4 102 461-562 264-378 (468)
242 COG3071 HemY Uncharacterized e 95.8 0.042 9.2E-07 54.7 8.7 82 476-557 306-387 (400)
243 COG4700 Uncharacterized protei 95.8 0.17 3.6E-06 45.4 11.5 105 463-567 123-233 (251)
244 PF13174 TPR_6: Tetratricopept 95.8 0.019 4E-07 35.8 4.2 33 465-497 1-33 (33)
245 PF04184 ST7: ST7 protein; In 95.8 0.093 2E-06 54.1 11.0 103 464-567 259-382 (539)
246 smart00028 TPR Tetratricopepti 95.7 0.016 3.5E-07 35.2 3.7 33 465-497 2-34 (34)
247 KOG2376 Signal recognition par 95.7 0.051 1.1E-06 56.8 9.0 92 464-555 12-103 (652)
248 KOG4151 Myosin assembly protei 95.6 0.036 7.9E-07 59.9 7.8 101 463-563 52-159 (748)
249 KOG2053 Mitochondrial inherita 95.5 0.22 4.8E-06 54.7 13.3 94 462-555 41-138 (932)
250 KOG0546 HSP90 co-chaperone CPR 95.4 0.0094 2E-07 58.4 2.4 102 463-564 221-342 (372)
251 KOG2796 Uncharacterized conser 95.3 0.089 1.9E-06 49.6 8.5 107 461-567 209-322 (366)
252 KOG1941 Acetylcholine receptor 95.2 0.08 1.7E-06 52.1 7.9 100 463-562 161-277 (518)
253 PF10602 RPN7: 26S proteasome 95.2 1.2 2.6E-05 40.5 15.3 99 461-559 33-141 (177)
254 COG0457 NrfG FOG: TPR repeat [ 95.1 0.22 4.7E-06 46.0 11.0 90 473-562 139-233 (291)
255 KOG3785 Uncharacterized conser 95.1 0.26 5.6E-06 48.5 11.1 68 465-532 152-219 (557)
256 KOG3081 Vesicle coat complex C 95.1 0.25 5.5E-06 46.8 10.6 106 424-532 166-276 (299)
257 COG2976 Uncharacterized protei 95.1 0.16 3.4E-06 45.9 8.9 97 465-561 90-189 (207)
258 PF13374 TPR_10: Tetratricopep 95.0 0.055 1.2E-06 35.7 4.7 31 498-528 2-32 (42)
259 PF04781 DUF627: Protein of un 95.0 0.34 7.3E-06 39.7 9.8 93 470-562 2-109 (111)
260 PF13431 TPR_17: Tetratricopep 94.9 0.022 4.8E-07 36.1 2.4 31 521-551 2-33 (34)
261 PF12862 Apc5: Anaphase-promot 94.7 0.23 4.9E-06 40.0 8.4 59 473-531 7-74 (94)
262 COG0457 NrfG FOG: TPR repeat [ 94.7 0.35 7.5E-06 44.6 11.1 102 462-563 165-268 (291)
263 KOG1585 Protein required for f 94.6 0.38 8.3E-06 45.0 10.4 103 460-562 106-221 (308)
264 KOG3364 Membrane protein invol 94.6 0.68 1.5E-05 39.3 10.8 69 464-532 32-105 (149)
265 COG3118 Thioredoxin domain-con 94.6 0.45 9.9E-06 46.0 11.1 98 464-561 134-266 (304)
266 PF14853 Fis1_TPR_C: Fis1 C-te 94.5 0.24 5.1E-06 34.9 6.9 42 466-507 3-44 (53)
267 COG2912 Uncharacterized conser 94.5 0.26 5.6E-06 47.2 9.2 76 464-539 181-257 (269)
268 KOG0495 HAT repeat protein [RN 94.4 0.52 1.1E-05 50.2 12.0 97 461-557 682-779 (913)
269 KOG3081 Vesicle coat complex C 94.4 0.91 2E-05 43.2 12.5 61 477-537 186-247 (299)
270 PF05843 Suf: Suppressor of fo 94.4 0.98 2.1E-05 44.5 13.8 101 463-563 34-139 (280)
271 KOG1915 Cell cycle control pro 94.2 0.39 8.5E-06 49.1 10.3 100 464-563 73-173 (677)
272 KOG1941 Acetylcholine receptor 94.1 0.32 6.9E-06 48.1 9.2 128 416-560 12-151 (518)
273 PLN03218 maturation of RBCL 1; 94.1 0.38 8.2E-06 56.2 11.5 91 465-555 580-673 (1060)
274 KOG1585 Protein required for f 93.7 1.2 2.7E-05 41.8 11.7 69 460-528 27-101 (308)
275 PLN03081 pentatricopeptide (PP 93.7 0.23 4.9E-06 56.0 8.8 90 465-557 361-452 (697)
276 COG3071 HemY Uncharacterized e 93.5 0.34 7.4E-06 48.5 8.3 94 464-557 118-213 (400)
277 KOG4507 Uncharacterized conser 93.3 0.33 7.3E-06 50.8 8.2 65 467-531 645-709 (886)
278 COG3914 Spy Predicted O-linked 93.3 0.68 1.5E-05 48.8 10.4 108 456-564 60-175 (620)
279 PF13374 TPR_10: Tetratricopep 93.3 0.21 4.4E-06 32.8 4.7 31 464-494 2-32 (42)
280 PRK04841 transcriptional regul 93.2 1 2.2E-05 52.5 13.4 97 464-560 452-560 (903)
281 PF12968 DUF3856: Domain of Un 93.2 1 2.2E-05 37.3 9.1 64 464-527 55-129 (144)
282 PLN03077 Protein ECB2; Provisi 93.2 0.36 7.9E-06 55.8 9.5 92 465-557 555-651 (857)
283 PLN03218 maturation of RBCL 1; 93.2 0.75 1.6E-05 53.8 11.8 95 464-558 507-606 (1060)
284 KOG1586 Protein required for f 93.1 0.84 1.8E-05 42.6 9.6 101 459-560 29-143 (288)
285 COG4105 ComL DNA uptake lipopr 93.1 4.6 0.0001 38.5 14.7 68 464-531 71-149 (254)
286 PF10516 SHNi-TPR: SHNi-TPR; 93.0 0.17 3.7E-06 32.8 3.6 30 499-528 2-31 (38)
287 COG3898 Uncharacterized membra 92.8 0.67 1.5E-05 46.4 9.1 96 467-563 191-295 (531)
288 KOG2610 Uncharacterized conser 92.5 0.88 1.9E-05 44.6 9.2 101 458-558 169-274 (491)
289 KOG2053 Mitochondrial inherita 92.4 1.1 2.4E-05 49.4 11.0 95 468-563 13-109 (932)
290 PF04184 ST7: ST7 protein; In 92.1 2 4.3E-05 44.7 11.7 60 498-557 259-321 (539)
291 PF10300 DUF3808: Protein of u 92.0 0.84 1.8E-05 48.5 9.6 88 476-563 245-337 (468)
292 PRK04841 transcriptional regul 92.0 1 2.2E-05 52.5 11.3 95 465-559 492-601 (903)
293 PLN03081 pentatricopeptide (PP 91.7 1 2.2E-05 50.9 10.4 95 463-557 289-386 (697)
294 KOG2471 TPR repeat-containing 91.6 0.3 6.6E-06 50.0 5.3 82 463-544 282-382 (696)
295 KOG0546 HSP90 co-chaperone CPR 91.6 0.16 3.6E-06 50.0 3.3 67 466-532 277-343 (372)
296 COG4455 ImpE Protein of avirul 90.9 2 4.3E-05 39.8 9.3 61 471-531 8-68 (273)
297 KOG1310 WD40 repeat protein [G 90.9 0.46 9.9E-06 49.2 5.8 79 453-531 397-478 (758)
298 KOG2610 Uncharacterized conser 90.7 2.1 4.5E-05 42.1 9.7 89 464-552 137-230 (491)
299 KOG4507 Uncharacterized conser 90.7 0.74 1.6E-05 48.4 7.1 91 475-565 618-710 (886)
300 PF10516 SHNi-TPR: SHNi-TPR; 90.6 0.46 9.9E-06 30.8 3.6 30 465-494 2-31 (38)
301 PF05843 Suf: Suppressor of fo 90.4 2.1 4.5E-05 42.2 10.0 98 466-563 3-102 (280)
302 PLN03077 Protein ECB2; Provisi 90.4 1.5 3.3E-05 50.7 10.5 87 468-558 528-616 (857)
303 cd02682 MIT_AAA_Arch MIT: doma 89.8 1.7 3.7E-05 33.0 6.7 31 463-493 5-35 (75)
304 PF07720 TPR_3: Tetratricopept 89.7 1.2 2.6E-05 28.5 5.0 31 500-530 3-35 (36)
305 PF15015 NYD-SP12_N: Spermatog 89.7 2.2 4.8E-05 43.2 9.2 95 433-527 195-291 (569)
306 PF09986 DUF2225: Uncharacteri 89.5 8.6 0.00019 36.1 12.8 77 462-538 116-207 (214)
307 cd02683 MIT_1 MIT: domain cont 89.2 8 0.00017 29.7 10.2 32 462-493 4-35 (77)
308 PF07079 DUF1347: Protein of u 89.0 4.6 9.9E-05 41.5 11.0 59 464-523 462-520 (549)
309 COG3629 DnrI DNA-binding trans 88.7 7 0.00015 38.1 11.8 66 462-527 151-216 (280)
310 KOG1915 Cell cycle control pro 88.5 10 0.00022 39.3 13.0 88 475-562 377-468 (677)
311 PF04781 DUF627: Protein of un 88.5 2.2 4.9E-05 35.0 7.0 65 464-528 33-108 (111)
312 PF14561 TPR_20: Tetratricopep 88.3 2.7 5.7E-05 33.4 7.3 65 459-523 17-83 (90)
313 PF07721 TPR_4: Tetratricopept 88.1 0.67 1.5E-05 27.1 2.8 24 499-522 2-25 (26)
314 KOG3824 Huntingtin interacting 87.9 2.2 4.9E-05 41.4 7.6 59 508-566 126-185 (472)
315 PF07720 TPR_3: Tetratricopept 87.7 2 4.3E-05 27.5 5.0 33 465-497 2-36 (36)
316 PRK10941 hypothetical protein; 87.7 1.5 3.3E-05 42.6 6.7 65 499-563 182-247 (269)
317 COG2976 Uncharacterized protei 87.6 4.3 9.3E-05 37.0 8.8 67 464-531 126-192 (207)
318 PF09613 HrpB1_HrpK: Bacterial 85.7 22 0.00048 31.5 12.1 69 461-530 41-109 (160)
319 PF08424 NRDE-2: NRDE-2, neces 85.4 17 0.00037 36.5 13.1 80 480-559 47-137 (321)
320 KOG0686 COP9 signalosome, subu 84.9 19 0.00041 36.7 12.6 95 464-558 150-256 (466)
321 PF09986 DUF2225: Uncharacteri 83.9 3.7 8.1E-05 38.5 7.1 91 473-563 86-197 (214)
322 PF14863 Alkyl_sulf_dimr: Alky 83.9 3.6 7.9E-05 35.7 6.4 52 464-515 70-121 (141)
323 KOG2047 mRNA splicing factor [ 83.5 47 0.001 36.0 15.3 135 429-563 389-543 (835)
324 PF04212 MIT: MIT (microtubule 83.3 3 6.4E-05 31.2 5.0 31 463-493 4-34 (69)
325 cd02682 MIT_AAA_Arch MIT: doma 83.1 8.2 0.00018 29.4 7.2 49 500-548 8-64 (75)
326 PF09613 HrpB1_HrpK: Bacterial 82.7 4.7 0.0001 35.6 6.7 71 461-531 7-77 (160)
327 KOG1070 rRNA processing protei 82.7 19 0.00041 42.5 12.8 82 475-556 1541-1625(1710)
328 cd02681 MIT_calpain7_1 MIT: do 82.0 3.5 7.5E-05 31.5 4.9 31 463-493 5-35 (76)
329 PF10373 EST1_DNA_bind: Est1 D 81.9 2.7 5.9E-05 41.1 5.7 46 483-528 1-46 (278)
330 COG2909 MalT ATP-dependent tra 81.7 33 0.00071 38.6 13.9 97 459-555 453-563 (894)
331 COG3118 Thioredoxin domain-con 81.7 28 0.00061 34.0 12.0 58 488-545 226-286 (304)
332 KOG3617 WD40 and TPR repeat-co 81.1 15 0.00033 40.7 10.8 100 464-563 858-999 (1416)
333 cd02681 MIT_calpain7_1 MIT: do 80.5 10 0.00022 29.0 7.0 54 481-549 4-66 (76)
334 KOG2471 TPR repeat-containing 79.8 7.6 0.00016 40.3 7.8 53 458-510 329-381 (696)
335 cd02680 MIT_calpain7_2 MIT: do 79.5 4 8.6E-05 31.1 4.5 32 462-493 4-35 (75)
336 PRK13184 pknD serine/threonine 79.2 8.1 0.00017 44.4 8.8 103 459-562 507-622 (932)
337 KOG2300 Uncharacterized conser 79.1 34 0.00073 35.8 12.1 95 462-556 44-152 (629)
338 PF11817 Foie-gras_1: Foie gra 78.6 9.2 0.0002 36.8 8.0 64 462-525 176-245 (247)
339 PF02259 FAT: FAT domain; Int 78.2 8.5 0.00018 39.0 8.1 71 460-530 248-341 (352)
340 PF13281 DUF4071: Domain of un 77.9 10 0.00022 38.7 8.2 77 463-539 178-267 (374)
341 COG3898 Uncharacterized membra 77.5 19 0.00042 36.5 9.6 92 464-557 120-214 (531)
342 KOG2047 mRNA splicing factor [ 77.2 17 0.00038 39.2 9.7 97 463-559 510-614 (835)
343 KOG2396 HAT (Half-A-TPR) repea 77.1 13 0.00028 38.8 8.7 68 464-531 105-173 (568)
344 PF02259 FAT: FAT domain; Int 76.9 24 0.00052 35.6 11.0 82 463-544 183-305 (352)
345 COG3947 Response regulator con 76.8 9.5 0.0002 37.0 7.1 56 468-523 283-338 (361)
346 COG4976 Predicted methyltransf 76.1 3.4 7.4E-05 38.5 3.9 57 507-563 4-61 (287)
347 PF04910 Tcf25: Transcriptiona 75.8 15 0.00033 37.5 9.0 71 460-530 36-135 (360)
348 PF04910 Tcf25: Transcriptiona 75.2 25 0.00055 35.9 10.4 75 489-563 31-135 (360)
349 PF10952 DUF2753: Protein of u 75.0 18 0.0004 30.2 7.4 92 465-557 2-112 (140)
350 cd02678 MIT_VPS4 MIT: domain c 74.8 7.2 0.00016 29.7 4.8 30 463-492 5-34 (75)
351 PF07721 TPR_4: Tetratricopept 74.5 4.3 9.4E-05 23.6 2.8 24 465-488 2-25 (26)
352 PF13281 DUF4071: Domain of un 74.0 67 0.0014 32.9 12.8 100 464-563 141-258 (374)
353 cd02684 MIT_2 MIT: domain cont 74.0 8.1 0.00018 29.4 4.9 30 463-492 5-34 (75)
354 TIGR02561 HrpB1_HrpK type III 73.1 48 0.001 29.0 9.8 66 466-531 12-77 (153)
355 smart00386 HAT HAT (Half-A-TPR 72.9 9.2 0.0002 22.8 4.3 29 478-506 1-29 (33)
356 PRK15180 Vi polysaccharide bio 72.4 10 0.00023 39.2 6.6 95 469-563 328-423 (831)
357 KOG0530 Protein farnesyltransf 72.3 66 0.0014 31.0 11.3 111 461-571 74-191 (318)
358 smart00745 MIT Microtubule Int 71.9 9.1 0.0002 29.2 4.9 30 463-492 7-36 (77)
359 PF11207 DUF2989: Protein of u 71.0 17 0.00036 33.5 7.0 55 462-517 139-197 (203)
360 TIGR03504 FimV_Cterm FimV C-te 70.5 8.5 0.00018 25.9 3.8 30 501-531 2-31 (44)
361 PF07219 HemY_N: HemY protein 70.4 23 0.00049 29.1 7.3 52 462-513 57-108 (108)
362 PF04212 MIT: MIT (microtubule 70.0 11 0.00023 28.1 4.7 31 481-526 3-33 (69)
363 PF08424 NRDE-2: NRDE-2, neces 69.9 26 0.00056 35.3 9.0 79 484-562 5-96 (321)
364 cd02656 MIT MIT: domain contai 69.6 11 0.00024 28.6 4.9 29 464-492 6-34 (75)
365 KOG0529 Protein geranylgeranyl 69.5 55 0.0012 33.6 10.8 56 476-531 87-144 (421)
366 KOG3617 WD40 and TPR repeat-co 68.9 14 0.00031 40.9 7.0 80 482-561 837-942 (1416)
367 KOG3364 Membrane protein invol 68.5 14 0.00031 31.6 5.5 43 464-506 71-113 (149)
368 KOG1070 rRNA processing protei 68.1 16 0.00034 43.0 7.4 144 419-563 1450-1596(1710)
369 KOG3783 Uncharacterized conser 68.0 78 0.0017 33.7 11.8 73 459-531 444-524 (546)
370 TIGR02561 HrpB1_HrpK type III 67.9 12 0.00027 32.5 5.2 68 462-530 42-109 (153)
371 PF09670 Cas_Cas02710: CRISPR- 67.1 89 0.0019 32.3 12.3 64 465-528 132-199 (379)
372 cd02677 MIT_SNX15 MIT: domain 66.1 13 0.00027 28.4 4.4 26 466-491 8-33 (75)
373 cd02680 MIT_calpain7_2 MIT: do 65.7 13 0.00029 28.2 4.4 33 480-527 3-35 (75)
374 PF10602 RPN7: 26S proteasome 65.6 40 0.00087 30.5 8.5 60 498-557 36-99 (177)
375 PF09205 DUF1955: Domain of un 65.5 64 0.0014 27.7 8.7 64 464-527 85-149 (161)
376 PF01239 PPTA: Protein prenylt 65.0 22 0.00047 21.5 4.6 29 483-511 2-30 (31)
377 KOG0890 Protein kinase of the 64.9 67 0.0014 40.4 12.0 110 460-571 1666-1795(2382)
378 COG3947 Response regulator con 64.7 19 0.00041 35.0 6.2 62 499-560 280-349 (361)
379 KOG0530 Protein farnesyltransf 64.2 71 0.0015 30.8 9.7 72 459-530 107-179 (318)
380 COG5191 Uncharacterized conser 64.1 29 0.00062 34.1 7.3 69 463-531 106-175 (435)
381 KOG2396 HAT (Half-A-TPR) repea 64.0 42 0.00091 35.3 8.9 83 483-565 90-174 (568)
382 PF10255 Paf67: RNA polymerase 63.9 16 0.00034 37.8 6.0 56 470-526 128-192 (404)
383 PF07079 DUF1347: Protein of u 63.9 1.9E+02 0.004 30.4 13.2 55 505-559 469-523 (549)
384 PF08631 SPO22: Meiosis protei 63.8 30 0.00065 34.0 7.9 94 464-558 35-148 (278)
385 cd02679 MIT_spastin MIT: domai 63.8 14 0.00031 28.4 4.3 34 478-526 3-36 (79)
386 PF11817 Foie-gras_1: Foie gra 63.7 42 0.00092 32.2 8.8 56 498-553 178-240 (247)
387 KOG2041 WD40 repeat protein [G 62.6 76 0.0016 34.9 10.7 73 437-517 769-841 (1189)
388 KOG2581 26S proteasome regulat 61.9 1.5E+02 0.0033 30.5 12.1 79 441-520 224-309 (493)
389 KOG1550 Extracellular protein 61.6 39 0.00085 36.9 9.0 80 479-561 308-394 (552)
390 KOG1464 COP9 signalosome, subu 61.5 26 0.00056 33.7 6.4 53 475-527 38-94 (440)
391 PRK15180 Vi polysaccharide bio 61.4 1.1E+02 0.0023 32.2 11.1 93 468-560 293-386 (831)
392 KOG2300 Uncharacterized conser 60.6 1.1E+02 0.0023 32.3 11.0 97 461-561 364-475 (629)
393 COG3629 DnrI DNA-binding trans 60.4 70 0.0015 31.3 9.4 63 497-559 152-215 (280)
394 KOG1839 Uncharacterized protei 60.2 1.1E+02 0.0023 36.2 12.2 102 458-559 1009-1127(1236)
395 KOG2422 Uncharacterized conser 60.1 2.5E+02 0.0055 30.3 13.9 107 455-561 275-414 (665)
396 smart00745 MIT Microtubule Int 60.1 45 0.00097 25.3 6.7 57 480-551 5-69 (77)
397 KOG3540 Beta amyloid precursor 58.0 2.4E+02 0.0052 29.5 12.9 54 478-531 326-381 (615)
398 KOG4056 Translocase of outer m 58.0 39 0.00084 28.8 6.2 43 459-501 72-118 (143)
399 KOG4563 Cell cycle-regulated h 57.3 25 0.00054 35.3 5.8 63 460-522 37-107 (400)
400 cd02683 MIT_1 MIT: domain cont 57.0 24 0.00053 27.0 4.6 64 481-552 4-68 (77)
401 cd02678 MIT_VPS4 MIT: domain c 56.3 86 0.0019 23.7 8.7 53 480-547 3-63 (75)
402 PRK13184 pknD serine/threonine 55.4 1.4E+02 0.003 34.8 12.2 73 460-532 548-625 (932)
403 KOG2581 26S proteasome regulat 54.5 53 0.0011 33.6 7.6 71 462-532 207-281 (493)
404 PF14863 Alkyl_sulf_dimr: Alky 54.4 60 0.0013 28.2 7.1 50 497-546 69-119 (141)
405 PF08631 SPO22: Meiosis protei 54.0 2.2E+02 0.0048 27.8 13.4 66 464-529 84-152 (278)
406 cd02677 MIT_SNX15 MIT: domain 53.5 88 0.0019 23.8 7.1 32 480-526 3-34 (75)
407 PF12854 PPR_1: PPR repeat 53.1 33 0.00072 21.3 4.0 26 498-523 7-32 (34)
408 TIGR00985 3a0801s04tom mitocho 51.7 64 0.0014 28.2 6.8 35 466-500 92-127 (148)
409 cd07642 BAR_ASAP2 The Bin/Amph 51.4 1.8E+02 0.004 27.1 10.0 116 435-559 5-125 (215)
410 PF10579 Rapsyn_N: Rapsyn N-te 50.9 1.1E+02 0.0025 23.5 8.2 57 501-557 9-69 (80)
411 cd02679 MIT_spastin MIT: domai 50.4 34 0.00074 26.3 4.4 32 462-493 6-37 (79)
412 PF13041 PPR_2: PPR repeat fam 49.4 79 0.0017 21.3 6.3 28 500-527 5-32 (50)
413 KOG1550 Extracellular protein 49.4 2.2E+02 0.0048 31.1 12.3 63 464-528 325-394 (552)
414 PF02064 MAS20: MAS20 protein 48.9 48 0.001 27.9 5.5 34 467-500 66-99 (121)
415 COG0790 FOG: TPR repeat, SEL1 48.9 1.6E+02 0.0036 28.7 10.5 96 464-560 109-220 (292)
416 COG4649 Uncharacterized protei 48.7 1.1E+02 0.0025 27.6 7.9 54 457-511 160-213 (221)
417 PF12854 PPR_1: PPR repeat 48.7 38 0.00082 21.0 3.8 26 464-489 7-32 (34)
418 KOG4814 Uncharacterized conser 48.7 1.7E+02 0.0037 32.0 10.5 68 460-527 390-457 (872)
419 COG3914 Spy Predicted O-linked 48.6 66 0.0014 34.5 7.6 73 459-531 96-175 (620)
420 PF11846 DUF3366: Domain of un 47.9 71 0.0015 29.3 7.2 50 481-531 128-177 (193)
421 cd02656 MIT MIT: domain contai 47.2 1E+02 0.0022 23.2 6.8 53 480-547 3-63 (75)
422 PRK15490 Vi polysaccharide bio 47.1 2.7E+02 0.0059 30.4 12.1 59 462-522 40-98 (578)
423 KOG0739 AAA+-type ATPase [Post 46.9 1.4E+02 0.0031 29.4 8.9 41 514-554 33-75 (439)
424 KOG2114 Vacuolar assembly/sort 46.6 1.1E+02 0.0024 34.3 9.1 32 461-492 365-396 (933)
425 PF01535 PPR: PPR repeat; Int 46.5 32 0.0007 20.1 3.2 26 501-526 3-28 (31)
426 KOG0529 Protein geranylgeranyl 46.2 2.5E+02 0.0055 29.0 10.9 90 473-562 37-142 (421)
427 KOG0687 26S proteasome regulat 45.6 3.3E+02 0.0071 27.3 12.3 98 460-557 100-207 (393)
428 KOG1839 Uncharacterized protei 45.5 64 0.0014 38.0 7.4 103 460-562 969-1088(1236)
429 PF12862 Apc5: Anaphase-promot 45.5 97 0.0021 24.5 6.7 34 462-495 39-72 (94)
430 PF10345 Cohesin_load: Cohesin 45.1 4.7E+02 0.01 29.0 16.5 101 459-560 54-168 (608)
431 COG5187 RPN7 26S proteasome re 44.4 3.2E+02 0.007 26.9 12.8 124 430-556 84-217 (412)
432 PF06957 COPI_C: Coatomer (COP 43.7 25 0.00055 36.5 3.7 141 392-532 165-334 (422)
433 KOG1258 mRNA processing protei 43.5 3.3E+02 0.0071 29.6 11.7 135 426-563 330-473 (577)
434 PF13041 PPR_2: PPR repeat fam 42.4 1E+02 0.0023 20.7 5.8 31 464-494 3-33 (50)
435 KOG2997 F-box protein FBX9 [Ge 42.4 35 0.00076 33.6 4.2 39 462-500 17-55 (366)
436 KOG1914 mRNA cleavage and poly 41.5 63 0.0014 34.4 6.1 71 456-527 12-82 (656)
437 KOG3807 Predicted membrane pro 41.5 3.8E+02 0.0082 26.9 12.7 98 466-567 277-398 (556)
438 PF13812 PPR_3: Pentatricopept 41.3 75 0.0016 19.0 4.4 27 500-526 3-29 (34)
439 KOG2422 Uncharacterized conser 40.6 5.1E+02 0.011 28.1 14.4 145 418-562 275-450 (665)
440 cd07641 BAR_ASAP1 The Bin/Amph 40.1 3.1E+02 0.0068 25.5 10.1 119 435-562 5-128 (215)
441 TIGR03504 FimV_Cterm FimV C-te 39.3 59 0.0013 21.8 3.7 26 468-493 3-28 (44)
442 cd02684 MIT_2 MIT: domain cont 39.2 1.7E+02 0.0037 22.2 7.8 55 480-549 3-65 (75)
443 TIGR00756 PPR pentatricopeptid 37.7 80 0.0017 18.7 4.2 26 501-526 3-28 (35)
444 KOG0292 Vesicle coat complex C 37.6 2.7E+02 0.0058 31.8 10.2 30 463-492 990-1019(1202)
445 COG0790 FOG: TPR repeat, SEL1 37.4 3.4E+02 0.0073 26.4 10.7 65 463-530 186-269 (292)
446 TIGR02710 CRISPR-associated pr 37.4 1.7E+02 0.0036 30.1 8.3 54 469-522 135-195 (380)
447 COG2912 Uncharacterized conser 37.2 65 0.0014 31.2 5.1 64 499-562 182-246 (269)
448 COG2909 MalT ATP-dependent tra 36.8 3.7E+02 0.0079 30.8 11.2 94 464-557 415-523 (894)
449 PF00244 14-3-3: 14-3-3 protei 36.5 1.3E+02 0.0029 28.6 7.2 47 481-527 143-198 (236)
450 cd00280 TRFH Telomeric Repeat 35.6 1.1E+02 0.0023 27.9 5.8 51 470-521 117-167 (200)
451 PF04053 Coatomer_WDAD: Coatom 35.0 2.6E+02 0.0057 29.5 9.7 55 463-525 346-400 (443)
452 smart00299 CLH Clathrin heavy 35.0 2.7E+02 0.0058 23.6 8.4 46 476-522 19-64 (140)
453 KOG3807 Predicted membrane pro 34.4 2.9E+02 0.0063 27.6 9.0 22 536-557 280-301 (556)
454 PF05053 Menin: Menin; InterP 33.7 1.7E+02 0.0036 31.5 7.7 89 426-527 252-347 (618)
455 KOG4151 Myosin assembly protei 33.5 68 0.0015 35.7 5.1 72 461-532 88-161 (748)
456 PF04053 Coatomer_WDAD: Coatom 33.4 1.6E+02 0.0034 31.2 7.7 34 494-527 343-376 (443)
457 PF08238 Sel1: Sel1 repeat; I 32.4 1.1E+02 0.0023 19.1 4.2 13 514-526 24-36 (39)
458 smart00671 SEL1 Sel1-like repe 32.0 87 0.0019 19.0 3.7 27 500-526 3-33 (36)
459 PF10938 YfdX: YfdX protein; 30.9 3.7E+02 0.0081 23.7 8.8 65 462-526 73-145 (155)
460 KOG1258 mRNA processing protei 30.6 6.8E+02 0.015 27.2 11.7 104 454-557 287-392 (577)
461 KOG0276 Vesicle coat complex C 30.4 1.3E+02 0.0027 32.7 6.2 63 462-524 664-747 (794)
462 KOG1811 Predicted Zn2+-binding 30.3 3.4E+02 0.0074 29.4 9.3 55 473-530 565-619 (1141)
463 COG5191 Uncharacterized conser 30.1 53 0.0011 32.4 3.2 78 487-564 96-175 (435)
464 smart00101 14_3_3 14-3-3 homol 28.9 2E+02 0.0044 27.5 7.0 46 481-526 145-199 (244)
465 KOG2997 F-box protein FBX9 [Ge 27.1 1.1E+02 0.0024 30.3 4.8 45 480-539 16-60 (366)
466 KOG0985 Vesicle coat protein c 27.1 1.8E+02 0.004 33.7 7.0 54 465-526 1195-1248(1666)
467 KOG1464 COP9 signalosome, subu 26.7 85 0.0018 30.3 3.9 50 510-559 39-100 (440)
468 PRK15490 Vi polysaccharide bio 26.0 4.9E+02 0.011 28.5 9.9 62 470-531 14-75 (578)
469 KOG3616 Selective LIM binding 25.5 1.2E+02 0.0026 33.6 5.1 49 474-523 742-790 (1636)
470 KOG3783 Uncharacterized conser 25.5 1.7E+02 0.0037 31.2 6.2 69 462-530 265-335 (546)
471 KOG0985 Vesicle coat protein c 25.3 5.3E+02 0.011 30.3 10.0 61 463-528 1103-1163(1666)
472 cd03822 GT1_ecORF704_like This 24.4 6.8E+02 0.015 24.5 11.4 45 351-410 259-303 (366)
473 PF04010 DUF357: Protein of un 24.1 2.1E+02 0.0046 21.7 5.0 32 458-489 29-60 (75)
474 PF04190 DUF410: Protein of un 24.1 5.9E+02 0.013 24.6 9.5 64 464-527 90-170 (260)
475 KOG1497 COP9 signalosome, subu 24.0 7.4E+02 0.016 24.8 13.4 93 462-555 101-208 (399)
476 COG4941 Predicted RNA polymera 23.3 2.5E+02 0.0054 28.2 6.4 62 469-530 334-397 (415)
477 KOG1463 26S proteasome regulat 23.2 81 0.0017 31.6 3.1 107 464-570 209-326 (411)
478 KOG1914 mRNA cleavage and poly 23.1 6.7E+02 0.014 27.1 9.8 55 473-527 410-464 (656)
479 PF14689 SPOB_a: Sensor_kinase 22.9 2.2E+02 0.0048 20.6 4.7 40 487-526 12-51 (62)
480 KOG3616 Selective LIM binding 22.6 3.3E+02 0.0071 30.4 7.7 61 464-524 661-732 (1636)
481 COG2178 Predicted RNA-binding 22.5 5.6E+02 0.012 23.6 8.1 64 463-526 28-97 (204)
482 PF15297 CKAP2_C: Cytoskeleton 22.5 4.5E+02 0.0098 26.6 8.2 67 464-530 102-172 (353)
483 PRK10316 hypothetical protein; 22.5 5.1E+02 0.011 24.0 7.9 61 465-525 128-196 (209)
484 PHA02537 M terminase endonucle 22.4 65 0.0014 30.5 2.3 90 475-564 94-211 (230)
485 cd03814 GT1_like_2 This family 22.2 7.4E+02 0.016 24.2 11.2 44 351-411 258-301 (364)
486 COG5600 Transcription-associat 22.2 7.3E+02 0.016 25.5 9.5 63 468-530 181-252 (413)
487 COG4455 ImpE Protein of avirul 22.0 2E+02 0.0043 27.1 5.2 58 507-564 10-68 (273)
488 PF11207 DUF2989: Protein of u 21.4 6.6E+02 0.014 23.3 8.5 73 477-551 120-198 (203)
489 KOG2124 Glycosylphosphatidylin 20.6 2.3E+02 0.005 32.2 6.2 86 412-497 331-420 (883)
490 PF14858 DUF4486: Domain of un 20.6 3.6E+02 0.0078 29.0 7.5 61 467-527 154-226 (542)
491 PF02184 HAT: HAT (Half-A-TPR) 20.3 2.3E+02 0.005 17.6 3.7 26 513-538 2-27 (32)
492 COG2015 Alkyl sulfatase and re 20.2 2.4E+02 0.0052 29.8 5.9 65 464-528 452-520 (655)
No 1
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-89 Score=711.60 Aligned_cols=419 Identities=26% Similarity=0.330 Sum_probs=337.8
Q ss_pred hHHHHhhhhhhHHHHHHH---------Hhh--hhcCcccceeeccccCCCC--CC-------CCCCCCCCCCCceeeeec
Q 008244 8 LWVLLGLGLAGILLMTKK---------LKK--NIKQDFGAFIEKLQLLPPP--QP-------LPPKAPHPLTGLSFAVSD 67 (573)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~---------~~~--~~~~~~na~~~~~~~~~~~--~a-------~~~~~~gpL~Gvp~~vKD 67 (573)
+..+++..|++++..++. ++| +.|+.+|||++...+.++. +| ..+...|||+||||+|||
T Consensus 4 ~~~~~~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~e~a~~~~~A~~~d~~~~~g~~~gpL~GvPiavKD 83 (475)
T COG0154 4 LTELTAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAAGEPLGPLAGVPIAVKD 83 (475)
T ss_pred hhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeChhhcchHHHHHHHHHHHhcCCCCCCcCCceEEEee
Confidence 456678888888666552 233 7889999999999887654 33 124557899999999999
Q ss_pred ccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHH
Q 008244 68 LFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGA 147 (573)
Q Consensus 68 ~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGs 147 (573)
||+|+|++||+||+.+.+ ++|.+||++|+||+++|||+|||||||||+|+.+|+|++||+|+||||++|+||||||||
T Consensus 84 n~~~~G~~Tt~gS~~l~~--~~p~~DA~vV~rL~~aGaviiGKTNm~Efa~g~~~~~s~~G~t~NP~~~~~~pGGSSgGS 161 (475)
T COG0154 84 NIDTAGLPTTAGSKALED--YVPPYDATVVERLRAAGAVILGKTNMDEFAMGSSTENSAFGPTRNPWNLERVPGGSSGGS 161 (475)
T ss_pred ccccCCCccCccChhhcc--CCCCcCcHHHHHHHHCCCEEEeecCCchhhcCCCCCCCCCCCCCCCCCCCCCCCcCchHH
Confidence 999999999999999986 478999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc-
Q 008244 148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA- 226 (573)
Q Consensus 148 aaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~- 226 (573)
||+||+|++|+|+|||||||||+|||||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+
T Consensus 162 AaAVAag~~~~alGSDtGGSIR~PAa~cGvvGlKPT~Grvsr~g~~~~a~sld~~GplartV~D~a~l~~v~~g~D~~d~ 241 (475)
T COG0154 162 AAAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDS 241 (475)
T ss_pred HHHHHhCCcchhcccCCCCchhhhhhhhCceeeCCCCCccCCCCCccccCCcCccCcccCCHHHHHHHHHHHcCCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988754332
Q ss_pred ---------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhh
Q 008244 227 ---------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKT 289 (573)
Q Consensus 227 ---------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~ 289 (573)
..++.||++..+.... ...++++.++++++++.|. |++|++ ...|.+.....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~-~~~~~~v~~~~~~a~~~l~~~Ga~v~~---------v~lp~~~~~~~- 310 (475)
T COG0154 242 PLPPPPPVPPALAGKDLKGLRIGVPKELGGG-GPLDPDVRAAFEAAVKALEAAGAEVVE---------VSLPLLSDDYA- 310 (475)
T ss_pred ccccccCccchhhccCCCCcEEEEECccccc-CCCcHHHHHHHHHHHHHHHHCCCEEEe---------ccCCchhhhhh-
Confidence 1233466666665432 2346789999999999986 666632 22332211000
Q ss_pred hhhHHHHHH-HHHHHHHHhhhHH--HHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHH---HHHHHhhcCCCCEE
Q 008244 290 NGELKNVMR-LIQRYEFKNNHNE--WIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEM---RSAISSLLKDDGIL 363 (573)
Q Consensus 290 ~~~l~~~~~-~~~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~---~~~~~~~~~~~DvL 363 (573)
...+. .......+..... +.......+++++++++..|..++..+|.++...|... ++.+.++|+++|+|
T Consensus 311 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ri~~G~~~~~~~~~~a~~~~~~~~~i~~~~~~~f~~~D~l 386 (475)
T COG0154 311 ----LAAYYLARFDGERYGLRAADLYGKTRAEGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQKTLIRRAFDKLFEEVDVL 386 (475)
T ss_pred ----hhHHHHHHhhhhhhhhcchhhhhhhhhhcccHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 00010 0000011111111 44555677999999999999999999999998888555 99999999999999
Q ss_pred EEcCCCCCCCCCCC-CCCC-hHHHHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008244 364 VTPTTAYPPPKLGG-KEML-SEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (573)
Q Consensus 364 l~Pt~~~~ap~~~~-~~~~-~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le~~ 440 (573)
|+||+|.+||++++ .... ....+..+..||.++|++|+|+||||+|++ +|||+||||+|++++|..||+++.++|+.
T Consensus 387 l~Pt~~~~a~~ig~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlqlig~~~~d~~LL~~a~~~E~~ 466 (475)
T COG0154 387 LTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTADGLPVGLQLIGPAFDDATLLRLAAALEQA 466 (475)
T ss_pred EeCCCCCCCcccccccccccCHHHHhhhccccccccccCCCeEEeccCCCCCCCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence 99999999999997 2111 111222223589999999999999999998 69999999999999999999999999987
Q ss_pred HHH
Q 008244 441 LQE 443 (573)
Q Consensus 441 l~~ 443 (573)
...
T Consensus 467 ~~~ 469 (475)
T COG0154 467 LGW 469 (475)
T ss_pred hCC
Confidence 654
No 2
>PLN02722 indole-3-acetamide amidohydrolase
Probab=100.00 E-value=1.2e-88 Score=700.24 Aligned_cols=405 Identities=59% Similarity=1.012 Sum_probs=334.0
Q ss_pred hcCcccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEe
Q 008244 30 IKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIG 109 (573)
Q Consensus 30 ~~~~~na~~~~~~~~~~~~a~~~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~g 109 (573)
.|+.+|||++....+. ..+...||||||||+|||+|+++|++||+||+.+.+.+.++.+||++|+||++||||++|
T Consensus 3 ~~~~~~a~~~~~~~~~----~~~~~~gpL~GvPiaVKD~~~v~G~~Tt~GS~~~~~~~~~~~~dA~vV~rL~~AGAiilG 78 (422)
T PLN02722 3 TNPDYGAFMEKFVLSP----TSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCVG 78 (422)
T ss_pred cCCCCCcceeeccccC----CCCCCCCCCCCCeEEEEcccccCCCccCCCCHHHHhcCCCCCCChHHHHHHHHCCCEEEE
Confidence 5778999998864321 112467999999999999999999999999998875333578999999999999999999
Q ss_pred ecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCcccc
Q 008244 110 KTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSH 189 (573)
Q Consensus 110 kt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~ 189 (573)
|||||||+++.+|+|++||+|+||||++|+||||||||||+||+|++|+|+|||||||||||||||||||||||+||||+
T Consensus 79 KTn~~Efa~~~~g~n~~~G~t~NP~~~~r~pGGSSsGSAaAVAaG~~p~AlGtDtgGSIRiPAa~cGvvG~KPT~G~vp~ 158 (422)
T PLN02722 79 KTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVST 158 (422)
T ss_pred EechhhHhhCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEeecCCCcccccChhHcceEEEecCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCcccCCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccc
Q 008244 190 MGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVL 267 (573)
Q Consensus 190 ~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv 267 (573)
.|++|+++++|++|||+|+++|+..+++++.+.+..+...+.||.+..+.+......++++...++++++.+. |+.+
T Consensus 159 ~G~~pla~sld~~G~~ar~v~D~a~~~~~l~g~~~~d~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v- 237 (422)
T PLN02722 159 VGVIPMAQSFDTVGWFARDPVILKRVGHVLLQQPDVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFGGGDIV- 237 (422)
T ss_pred CCCCcccCCCCcccceeCCHHHHHHHHHHHcCCCCCCCcCCceEEechhhhhhcccccHHHHHHHHHHHHHHhcCCCee-
Confidence 9999999999999999999999999999998776555566678877654432112234677888888888776 5554
Q ss_pred eeccCCccccccCCChhhhhh-----------hhhhHHHHHHHHHHHHHHhhhHHHHHhhCCCCCHHHHHHHHHhhcCCH
Q 008244 268 KHENLGEYFDSKVPSLKGFHK-----------TNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISE 336 (573)
Q Consensus 268 ~~~~lg~~v~~~~p~~~~~~~-----------~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~ 336 (573)
+..++...++...+.+..+.. ....+...+..+..++....+..|+....+.+++.++.+++.|..++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~s~ 317 (422)
T PLN02722 238 KHVNLGDYVEDKVPSLKHFMSKEIKEQEYNIPSLAALSSAMRLLQRYEFKINHGEWITAVKPEFGPGISERIWEAVRTTE 317 (422)
T ss_pred eecchhHHHHHhHHHHHHHhhcccccceecchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHhccCCH
Confidence 223332222222222211100 001122344445666777778888877778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccCCCCCc
Q 008244 337 TVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPT 416 (573)
Q Consensus 337 ~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPv 416 (573)
.+|.++++.|.++++++.++|+++|+||+||+|.+||+++........++..++.+|.++|++|+|+||||+|..+|||+
T Consensus 318 ~~y~~a~~~r~~~~~~~~~~~~~~D~Ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPv 397 (422)
T PLN02722 318 EKIDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADPTTLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPV 397 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcccCcchHHHHHHHHHHhhhcccccCCCEEEEeCCCCCCCCE
Confidence 99999999999999999999999999999999999999875422333444455678999999999999999999899999
Q ss_pred eeEEEeccCCcHHHHHHHHHHHH
Q 008244 417 SVSFIARHGGDRFLLDTVQNMYA 439 (573)
Q Consensus 417 Glq~~~~~~~d~~ll~~a~~le~ 439 (573)
|||++|++++|..||+++..+..
T Consensus 398 Glqivg~~~~D~~lL~~a~~l~~ 420 (422)
T PLN02722 398 SVSLLAKHGSDGFLLNLVESLYG 420 (422)
T ss_pred EEEEECCCCChHHHHHHHHHHHh
Confidence 99999999999999999998764
No 3
>PRK09201 amidase; Provisional
Probab=100.00 E-value=2e-87 Score=703.92 Aligned_cols=410 Identities=26% Similarity=0.352 Sum_probs=337.4
Q ss_pred HHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccc
Q 008244 9 WVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFD 70 (573)
Q Consensus 9 ~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~~~ 70 (573)
..+++.+|+++++.++ + ++| +.||.+|||++...|+++++|+ .++..||||||||+|||+|+
T Consensus 5 ~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~ 84 (465)
T PRK09201 5 SSLSAAEIAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAGEPLGPLAGVPFAVKNLFD 84 (465)
T ss_pred ccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCceEEEEeccc
Confidence 3457888888866654 2 233 7799999999998877766543 35668999999999999999
Q ss_pred cCCcccCCCchhhhhcCCCC-CCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHH
Q 008244 71 IEGYVTGFGHPEWARTHSAA-SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAV 149 (573)
Q Consensus 71 ~~g~~tt~Gs~~~~~~~~~~-~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaa 149 (573)
++|++||+||+.+.+. ++ ++||++|+|||++|||++||||||||+++.+|+|++||+|+||||++|+||||||||||
T Consensus 85 v~G~~tt~Gs~~~~~~--~~~~~dA~vV~~Lr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAa 162 (465)
T PRK09201 85 VAGLTTLAGSKINRDR--PPATRDATAVRRLEAAGAVLVGALNMDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSAA 162 (465)
T ss_pred cCCcccCcCChhhccC--CCCCCChHHHHHHHHCCCEEEEecChHHHhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Confidence 9999999999998763 56 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCcccC--
Q 008244 150 AVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ-- 227 (573)
Q Consensus 150 aVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~-- 227 (573)
+||+|++|+|+|||||||||||||||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+.
T Consensus 163 aVAaG~~~~alGtDtgGSIRiPAa~cGv~G~KPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~d~~d~~~ 242 (465)
T PRK09201 163 AVAAGLVPFTLGSDTNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVLQGPDPQDPFQ 242 (465)
T ss_pred HHHcCCCceEEecCCCCcchhhhHHhCceeeeCCCCccCCCCCCCcccccCcccCccCCHHHHHHHHHHhcCCCCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876432211
Q ss_pred ---------------CCCceEEEcccchhhcCCChHHHHHHHHHHHHHHcCCccceeccCCccccccCCChhhhhhhhhh
Q 008244 228 ---------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGE 292 (573)
Q Consensus 228 ---------------~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~ 292 (573)
.++.||++..+.+ ....++++.++++++++.|. +.+ .++ .|.....
T Consensus 243 ~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~-~~~--~v~--------~~~~~~~------ 303 (465)
T PRK09201 243 ADRPAEPTAPLLDRGAEGLRIAVLGGYF--AQWADPEARAAVDRVAKALG-ATR--EVE--------LPEAARA------ 303 (465)
T ss_pred ccCCCcchhhhhccCCCCCEEEEECccc--cCCCCHHHHHHHHHHHHHcc-Cce--eec--------CCchhHH------
Confidence 1334666654433 12357899999999998873 211 011 1221111
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCC
Q 008244 293 LKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPP 372 (573)
Q Consensus 293 l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~a 372 (573)
......+...|....+..++....+.+++.++.++..+..++..+|.++++.|+.+++.|.++|+++|+||+||+|.+|
T Consensus 304 -~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a 382 (465)
T PRK09201 304 -RAAAFIITASEGGNLHLPALRTRPQDFDPASRDRLLAGAMLPAAWYVQAQRFRRWFRQAVLELFEHVDVLIAPATPCSA 382 (465)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCC
Confidence 1112223334545556666666667899999999999988999999999999999999999999999999999999999
Q ss_pred CCCCCCCC---C-hHHHHHhhhhhhccccccCCceeeecCccCCCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008244 373 PKLGGKEM---L-SEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (573)
Q Consensus 373 p~~~~~~~---~-~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~~a~~le~~ 440 (573)
|+++.... . ...+...+..||.+||++|+|+||||+|..+|||+|||++|++++|..||+++..+|+.
T Consensus 383 p~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQivg~~~~D~~lL~~A~~le~~ 454 (465)
T PRK09201 383 PLIGQETMRIDGVELPVRANLGILTQPISFIGLPVVAVPLRTPGGLPIGVQLIAAPWREDLALRAAAALEQQ 454 (465)
T ss_pred CcccccccccCcchhhhhhhHHHhCccccccCCCeEEEeCCCCCCcCeEEEEECCCCCHHHHHHHHHHHHhh
Confidence 99975321 1 11112234458999999999999999998799999999999999999999999999963
No 4
>TIGR02715 amido_AtzE amidohydrolase, AtzE family. Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.
Probab=100.00 E-value=2.4e-87 Score=701.71 Aligned_cols=390 Identities=27% Similarity=0.382 Sum_probs=323.9
Q ss_pred hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccCCcccCCCchhhhhcCCCC-CCChHHHHHH
Q 008244 29 NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAA-SRTSTVVSTL 100 (573)
Q Consensus 29 ~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~-~~da~~v~~L 100 (573)
+.||.+|||++...++++++|+ .++..||||||||+|||+|+++|++||+||+.+.+. ++ .+||++|+||
T Consensus 29 ~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~~~--~p~~~dA~vV~rL 106 (452)
T TIGR02715 29 QADGGLNAFTAVTAERALADAARIDADLAAGSPLGPLAGVPFAVKNLFDVAGLTTLAGAKINRDL--APAKRDATLVQRL 106 (452)
T ss_pred HHCCCccEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEeccccCCceeCcCChhhccC--CCCCCCHHHHHHH
Confidence 7799999999998877766543 356679999999999999999999999999998753 55 7999999999
Q ss_pred HhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccc
Q 008244 101 VEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180 (573)
Q Consensus 101 ~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~Gl 180 (573)
|+||||++||||||||+++.+|.|++||+|+||||++|+||||||||||+||+|++|+|+||||||||||||||||||||
T Consensus 107 ~~AGAii~GkTn~~Ef~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAag~~~~alGtDtgGSiRiPAa~cGv~Gl 186 (452)
T TIGR02715 107 SAAGAVLVGALNMDEFAYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVPASLCGVFGL 186 (452)
T ss_pred HHCCCEEEEeccCHhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHCCCCceEEeeCCCCcchhhHHHhCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc-----------------CCCCceEEEcccchhhc
Q 008244 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-----------------QRSPRQIIIADDCFELL 243 (573)
Q Consensus 181 kPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-----------------~~~~~rl~i~~~~~~~~ 243 (573)
|||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+ ..++.||++..+.+ .
T Consensus 187 KPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~~~~d~~~~~~p~~~~~~~~~~~~~~lrig~~~~~~--~ 264 (452)
T TIGR02715 187 KPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDVMQGPDPQDPFCTDRPAEPTVPLLPAGISGLRIAVLGGWF--Q 264 (452)
T ss_pred eCCCCCccCCCCCCCccccCcccCeeCCHHHHHHHHHHhcCCCCCCcccccCCCcchhhhhhcCCCCCEEEEECccc--c
Confidence 9999999999999999999999999999999999999987643211 12345666654433 1
Q ss_pred CCChHHHHHHHHHHHHHHcCCccceeccCCccccccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHhhCCCCCHH
Q 008244 244 KIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPD 323 (573)
Q Consensus 244 ~~~~~~~~~~~~~a~~~l~G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 323 (573)
...++++.++++++++.|. ..++ + ..|..... ...+..+...+....+..++....+.+++.
T Consensus 265 ~~~~~~v~~a~~~a~~~L~-~~~~--------v--~~~~~~~~-------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 326 (452)
T TIGR02715 265 QNADPEALAAVGRVAKALG-ATTI--------V--ELPDAERA-------RAAAFVITASEGGNLHLDALRTRPQDFDPA 326 (452)
T ss_pred CCCCHHHHHHHHHHHHhcC-Ceee--------e--cCCchHHH-------HHHHHHHHHHHHHHHHHHHhhhchhhcCHH
Confidence 2357899999999998873 2110 1 12222111 111222333344444556666666789999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCC--C--hHHHHHhhhhhhcccccc
Q 008244 324 ISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM--L--SEDYQNRAFSLLSIASVS 399 (573)
Q Consensus 324 ~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~--~--~~~~~~~~~~~t~~~nl~ 399 (573)
++.++..+..++..+|.++++.|+.+++.|.++|+++|+||+||+|.+||+++.... . ...+...+..||.+||++
T Consensus 327 ~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~ 406 (452)
T TIGR02715 327 TRDRLLAGALLPASWYAQAQRFRHWFRDAIRELFQRVDVLIAPATPCSAPLIGQETMIIDGVPVPVRANLGIFTQPISFA 406 (452)
T ss_pred HHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcCcccccccCccchhhhhhHHhcCccchhc
Confidence 999999998899999999999999999999999999999999999999999875311 1 111122344589999999
Q ss_pred CCceeeecCccCCCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008244 400 GCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (573)
Q Consensus 400 G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~~a~~le~~ 440 (573)
|+|++|||+|..+|||+|||++|++++|..||+++..+|+.
T Consensus 407 G~PaisvP~g~~~glPvGlQivg~~~~D~~lL~~a~~le~~ 447 (452)
T TIGR02715 407 GLPVLAAPLPRPGRLPIGVQLIAAPWREDLCLRAAAVLERQ 447 (452)
T ss_pred CCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 99999999999899999999999999999999999999964
No 5
>PRK05962 amidase; Validated
Probab=100.00 E-value=5.8e-87 Score=692.38 Aligned_cols=397 Identities=24% Similarity=0.355 Sum_probs=328.8
Q ss_pred hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccCCcccCCCchhhhhcCCCC-CCChHHHHHH
Q 008244 29 NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAA-SRTSTVVSTL 100 (573)
Q Consensus 29 ~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~-~~da~~v~~L 100 (573)
+.||.+|||++...++++++|+ .++..|||+||||+|||+|+++|++||+||+.+.+. ++ ++||++|+||
T Consensus 10 ~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~--~~~~~dA~vV~rL 87 (424)
T PRK05962 10 ARAGEEHVFSKLYAERARAEADAADARRRAGRSLGPLDGRIVSIKDLFDVAGEPTLAGSVIRRDA--PPAGADALIVQRL 87 (424)
T ss_pred hhCCcccEEEEECHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEEeeeecCCcccCCCChhhhcC--CCCcCChHHHHHH
Confidence 6789999999998877666542 356689999999999999999999999999998753 56 6899999999
Q ss_pred HhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccc
Q 008244 101 VEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180 (573)
Q Consensus 101 ~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~Gl 180 (573)
+++|||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+|++|+|+|||||||||+||+|||||||
T Consensus 88 ~~aGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPAa~cGv~Gl 167 (424)
T PRK05962 88 RNAGAVIIGKTHMTEFAFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNGLVGF 167 (424)
T ss_pred HHCCCEEEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEEeeCCCCcchhhhHhhCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc----CCCCceEEEcccchhhcCCChHHHHHHHHH
Q 008244 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA----QRSPRQIIIADDCFELLKIPADRVVQVVIK 256 (573)
Q Consensus 181 kPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~----~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~ 256 (573)
|||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+ ..++.||++..+.+ ....++++.+++++
T Consensus 168 KPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~~~~~~vl~g~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~ 245 (424)
T PRK05962 168 KPTARRIPLEGAFPLSPSLDSIGPLARTVADCAAADAVMAGEKPIPLEVLPVAGLRIGLPKGYL--LADMEPDVAAAFEA 245 (424)
T ss_pred ecCCCceeCCCcccCccccCccccccCCHHHHHHHHHHHcCCCCCcccccCcCCcEEEEEcccc--cccCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999887654321 22345666655433 22357899999999
Q ss_pred HHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHhhCCCCCHHHHHHHHHhhcC
Q 008244 257 STEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEI 334 (573)
Q Consensus 257 a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 334 (573)
+++.|. |++|++ .+ .|.+.+... .......+...+....+..|+....+.+++.++.++..+..+
T Consensus 246 a~~~L~~~G~~v~~-~~--------~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 312 (424)
T PRK05962 246 SLAALEKAGARIAD-LA--------IDDLIARLA----EATRIGSIAGIEASHIHADWLADLDANVDIRVKRPLSRRIKV 312 (424)
T ss_pred HHHHHHHCCCEEEE-ec--------cchHHHHHH----HHHHHhHHHHHHHHHHHHHHHhhchhhCCHHHHHHHHhccCC
Confidence 999885 776643 11 122111000 000111223334444556666666678999999999999899
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCChHHH---HHhhhhhhccccccCCceeeecCccC
Q 008244 335 SETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDY---QNRAFSLLSIASVSGCCQVTVPLGYY 411 (573)
Q Consensus 335 s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~---~~~~~~~t~~~nl~G~PaisvP~g~~ 411 (573)
+..+|.++++.|..+++.|.++|+++|+||+||+|.++|+++....+...+ ...++.||.++|++|+|++|||+|.
T Consensus 313 ~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~G~Pa~svP~g~- 391 (424)
T PRK05962 313 PLEAYHRLMRTRAALARAMDERLAGFDMFALPATPIVAPTIASVSEDEEEYDRVENLLLRNTQVANQFDLCSITLPMPG- 391 (424)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCccccccchHHHHHHHHHHHhhCcCccccCCCeEEEECCC-
Confidence 999999999999999999999999999999999999999987543222212 2224458999999999999999984
Q ss_pred CCCCceeEEEeccCCcHHHHHHHHHHHHHHHH
Q 008244 412 DKCPTSVSFIARHGGDRFLLDTVQNMYASLQE 443 (573)
Q Consensus 412 ~glPvGlq~~~~~~~d~~ll~~a~~le~~l~~ 443 (573)
+|||+|||++|++++|..||++++.+|+.+++
T Consensus 392 ~glPvGlqlvg~~~~D~~lL~~a~~le~~l~~ 423 (424)
T PRK05962 392 MALPAGLMLTARNGSDRRLLAAAASVEKLLEH 423 (424)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHhcc
Confidence 69999999999999999999999999987653
No 6
>PRK07487 amidase; Provisional
Probab=100.00 E-value=1.2e-86 Score=698.92 Aligned_cols=416 Identities=22% Similarity=0.240 Sum_probs=334.2
Q ss_pred hhHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecc
Q 008244 7 NLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDL 68 (573)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~ 68 (573)
+++.+|+.+|+++++.++ + ++| +.||.+|||++...++++++|+ .++..|||+||||+|||+
T Consensus 4 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~ 83 (469)
T PRK07487 4 ELWRLSAAELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDDPGPLAGVPVTVKVN 83 (469)
T ss_pred hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHhHHHHhcCCCCCCcCCCEEEEecc
Confidence 366778999999976654 3 233 7799999999998877766543 255679999999999999
Q ss_pred cccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHH
Q 008244 69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA 148 (573)
Q Consensus 69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsa 148 (573)
|+|+|++||+||+.+.+ +++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||
T Consensus 84 ~~v~G~~tt~Gs~~~~~--~~~~~da~vV~rLr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~~GGSSgGsA 161 (469)
T PRK07487 84 VDQAGFATTNGVRLQKD--LIAPADSPVVDNLRKAGAVIIGRTNTPAFSYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAA 161 (469)
T ss_pred cccCCCccCcchHHhcC--CCCCCchHHHHHHHHCCCEEEEecChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHH
Confidence 99999999999998876 4889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCC----CC-CCCCcccccccCHHHHHHHHHHhcCCC
Q 008244 149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIP----IS-TSLDTVGWFARDPKILRHVGHVLLQLP 223 (573)
Q Consensus 149 aaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p----~~-~~~d~~G~~ar~~~d~~~v~~~~~~~~ 223 (573)
|+||+|++|+|+|||||||||||||||||||||||+||||+.|+++ ++ .++|++|||+|+++|+..+++++.+.+
T Consensus 162 aAVAaG~~~~alGtDtgGSIRiPAa~cGvvGlKPT~G~is~~g~~~~~~~l~~~~~~~~Gplarsv~D~a~~~~~l~g~d 241 (469)
T PRK07487 162 AAVAAGIGAIAHGTDIGGSIRYPAYACGVHGLRPTLGRVPAYNASSPERPIGAQLMSVQGPLARTVADLRLALAAMAAPD 241 (469)
T ss_pred HHHHcCCCceeeecCCCCccccchhhcCceeecCCCCccCCCCCCccccccccccccccCCeeCCHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999873 33 478999999999999999999987643
Q ss_pred ccc----------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhh
Q 008244 224 FAA----------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNG 291 (573)
Q Consensus 224 ~~~----------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~ 291 (573)
..+ ..++.||++..+.+. ...++++.++++++++.|. |++|++ . ...|.+.+.
T Consensus 242 ~~d~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~-------~~~~~~~~~----- 306 (469)
T PRK07487 242 PRDPWWVPAPLEGPPRPKRVALCVRPDG--LDVDPEVEAALRDAARRLEDAGWTVEE-V-------DDTPPLREA----- 306 (469)
T ss_pred CCCCccCCCCccCCCCCcEEEEECCCCC--CCCCHHHHHHHHHHHHHHHHCCCEEEe-c-------CCCCchHHH-----
Confidence 222 123456766554331 2357899999999999885 666532 1 012333221
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHhh-CCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCC
Q 008244 292 ELKNVMRLIQRYEFKNNHNEWIESV-KPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAY 370 (573)
Q Consensus 292 ~l~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~ 370 (573)
...+..+...+....+..++... .+.+.+.++..+..+..++..+|.++++.|+.++++|.++|+++|+||+||+|.
T Consensus 307 --~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~p~ 384 (469)
T PRK07487 307 --AELQERLWLGDGYEALLAAAEAEGDPGALAALRGQRAKARPLDLAGYMNALARRATLTRQWQLFFEDYPLLLMPVSAE 384 (469)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCC
Confidence 11222233334444444444332 244666666666777889999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCChHHHHH--hhhhhhccccccCCceeeecCccCCCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008244 371 PPPKLGGKEMLSEDYQN--RAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASL 441 (573)
Q Consensus 371 ~ap~~~~~~~~~~~~~~--~~~~~t~~~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~~a~~le~~l 441 (573)
+||+++........+.. ....+|.++|++|+|++|||+|+.+|||+|||++|++++|..||++++.+|+.+
T Consensus 385 ~a~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~lL~~a~~lE~~~ 457 (469)
T PRK07487 385 LPFPDDLDRQGAEGFRRVWEAQLPQIALPFMGLPGLSVPTGLVGGVPVGVQLVAGRFREDLCLAAGEAIEARG 457 (469)
T ss_pred CCCCCCCcCCchhhhhHHHHhhcccccccccCCCeEEEECccCCCcceeEEEeCCCCCHHHHHHHHHHHHHhh
Confidence 99998753222222211 111257799999999999999999999999999999999999999999999754
No 7
>PRK06102 hypothetical protein; Provisional
Probab=100.00 E-value=9.7e-87 Score=696.31 Aligned_cols=415 Identities=26% Similarity=0.367 Sum_probs=334.7
Q ss_pred HHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeeccccc
Q 008244 10 VLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDI 71 (573)
Q Consensus 10 ~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~~~~ 71 (573)
.+++.+|+++++.++ + ++| +.|+ +|||++...+.++++|+ .++..|||+||||+|||+|++
T Consensus 5 ~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~~-~na~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v 83 (452)
T PRK06102 5 AKSAAQLAVLIQSGALDPVQVAEQALDAIASYAD-QAVFISLTEERAMREAEASSARWRAGRSLGLLDGIPIAWKDLFDV 83 (452)
T ss_pred ccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCC-CCEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEecccc
Confidence 356778888866554 2 233 5575 89999998877666543 356789999999999999999
Q ss_pred CCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCC--CCCCCCCChHHHH
Q 008244 72 EGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAP--SQMPGGSSSGAAV 149 (573)
Q Consensus 72 ~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~--~~~~GGSSgGsaa 149 (573)
+|++||+||+.+.+. .++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||+ +|+||||||||||
T Consensus 84 ~G~~tt~Gs~~~~~~-~~~~~dA~vV~rL~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~~~GGSSgGsAa 162 (452)
T PRK06102 84 AGSVTTAGSVVLANA-APASRDAAVVALLARAGMVSIGRTNMSEFAFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAV 162 (452)
T ss_pred CCCccCcCChhhccC-CCCCCCHHHHHHHHHCCCEEEEeechHhHhcCCCCCCCCCCCCCCCCCCCCCcCCCCCcHHHHH
Confidence 999999999988753 2337999999999999999999999999999999999999999999996 7999999999999
Q ss_pred HHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc---
Q 008244 150 AVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--- 226 (573)
Q Consensus 150 aVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~--- 226 (573)
+||+|++|+|+||||||||||||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+
T Consensus 163 aVAaG~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~~~~~~ 242 (452)
T PRK06102 163 AVAAGLVPVAMGTDTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAVWIDAAMRGLTAPDVVR 242 (452)
T ss_pred HHHcCCCceEEecCCCCcchhhhHHhCceeEecCCCcccCCCCcccccccCcccCccCCHHHHHHHHHHHcCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887653222
Q ss_pred -CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHHHHH
Q 008244 227 -QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRY 303 (573)
Q Consensus 227 -~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~~~ 303 (573)
+.++.||.+..+.+ ....++++.++++++++.|. |++|++ . ..|.+.+... +...+..+...
T Consensus 243 ~~~~~~ri~~~~~~~--~~~~~~~v~~~~~~a~~~L~~~G~~v~~-~--------~~~~~~~~~~----~~~~~~~~~~~ 307 (452)
T PRK06102 243 RPLAGLRLVVPETVV--FDDAEPGVRAAFEAAVERLQAAGALVER-Q--------AFPAFQEILD----LIARHGWLVTA 307 (452)
T ss_pred cCCCCCEEEEecchh--cccCCHHHHHHHHHHHHHHHhCCCEEEe-c--------CCccHHHHHH----HHHHHHHHHHH
Confidence 22345666654432 13358899999999999886 666532 1 1233322111 00111122233
Q ss_pred HHHhhhHHHHHh-hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCCh
Q 008244 304 EFKNNHNEWIES-VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS 382 (573)
Q Consensus 304 e~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~ 382 (573)
+....+..++.. ..+.+.+.++.++..+..++..+|.++++.|.+++++|.++|+ +|+||+||+|.++|+++......
T Consensus 308 e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~-~D~ll~Pt~~~~ap~~~~~~~~~ 386 (452)
T PRK06102 308 EAFALHQERLDGPDAARMDPRVVKRTRLGRKITASDYIALLEARERLIAQVTRELG-GALLATPTVAHVAPPLAPLEADD 386 (452)
T ss_pred HHHHHHHHHhhccchhhCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHc-CCEEEeCCCCCCCCCccccccCc
Confidence 444445555543 3467899999999999999999999999999999999999999 89999999999999987532111
Q ss_pred HHH---HHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008244 383 EDY---QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442 (573)
Q Consensus 383 ~~~---~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le~~l~ 442 (573)
..+ ...++.||.+||++|+|++|||+|+. +|||+|||++|++++|..||+++..+|+.+.
T Consensus 387 ~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~~glPvGlQivg~~~~D~~lL~~a~~le~~l~ 450 (452)
T PRK06102 387 DLFFATNLKTLRNTMPGNFLDMCGVSLPCGTGAAGMPVGLLLSAPAGRDERLLRAALAVEAVIR 450 (452)
T ss_pred hhhhhhhhhhhhcCccccccCCCeEEEecCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 111 12334589999999999999999987 8999999999999999999999999998763
No 8
>PRK06169 putative amidase; Provisional
Probab=100.00 E-value=9e-87 Score=700.03 Aligned_cols=414 Identities=20% Similarity=0.240 Sum_probs=335.0
Q ss_pred hhHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecc
Q 008244 7 NLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDL 68 (573)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~ 68 (573)
++..+++.+|+++++.++ + ++| +.||.+|||++...+.++++|+ .++..||||||||+|||+
T Consensus 3 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~ 82 (466)
T PRK06169 3 DLADLTAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERWRRGEPCGLLDGVPVSIKDI 82 (466)
T ss_pred chhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeCHHHHHHHHHHHHHHHhcCCCCCCcCCceEEEecc
Confidence 456678889988876654 3 233 6799999999998777665542 355679999999999999
Q ss_pred cccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHH
Q 008244 69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA 148 (573)
Q Consensus 69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsa 148 (573)
|+++|++||+||+.+.+. .++.+||++|++||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||
T Consensus 83 ~~v~G~~tt~Gs~~~~~~-~p~~~da~vV~~Lr~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA 161 (466)
T PRK06169 83 FLTRGWPTLRGSRAIDAD-GPWDVDAPAVARLREAGAVLLGKTTTPEFGWKGVTDSPLYGITRNPWDTRLTAGGSSGGAA 161 (466)
T ss_pred cccCCcccCccChhhccC-CCCCCCHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHH
Confidence 999999999999998753 3457999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc--
Q 008244 149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-- 226 (573)
Q Consensus 149 aaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-- 226 (573)
|+||+|++|+|+|||||||||+|||||||||||||+||+|+.|+.|++ ++|++|||+|+++|+..+++++.+.+..+
T Consensus 162 aaVAaG~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~vs~~g~~~~~-~~d~~Gp~arsv~D~~~~~~~l~g~~~~d~~ 240 (466)
T PRK06169 162 AAVALGMGPLSVGTDGGGSVRIPASFCGTFGFKPTFGRVPLYPASPFG-TLAHVGPMTRTVADAALLLDVIARPDARDWS 240 (466)
T ss_pred HHHHcCCCceeeecCCCCcchhchHhhCceeecCCCCccCCCCCCCCc-cccccCCeeCCHHHHHHHHHHhcCCCCCCCc
Confidence 999999999999999999999999999999999999999999998886 89999999999999999999887543211
Q ss_pred ---------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhh
Q 008244 227 ---------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKT 289 (573)
Q Consensus 227 ---------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~ 289 (573)
..++.||++..+.. ....++++.++++++++.|. |++|++ ++ +++....
T Consensus 241 ~~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~---------~~~~~~~-- 306 (466)
T PRK06169 241 ALPPPTTSFLDALDRDVRGLRIAYSPTLG--YVDVDPEVAALVAQAVQRLAALGARVEE-VD---------PGFSDPV-- 306 (466)
T ss_pred ccCCCCcchhhhhccCCCCCEEEEECCcC--CCCCCHHHHHHHHHHHHHHHHcCCEEEE-eC---------CCcchHH--
Confidence 12345666654332 12357899999999999986 666532 11 1121110
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCC
Q 008244 290 NGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTA 369 (573)
Q Consensus 290 ~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~ 369 (573)
..+..+...+....+..+.....+.+++.++.++..+..++..+|.++++.|+.++++|.++|+++|+||+||+|
T Consensus 307 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~ 381 (466)
T PRK06169 307 -----EAFHVLWFAGAARLLRALPPGQRALLDPGLRRIAERGATYSASDYLDATAVRAALGARMGAFHERYDLLLTPTLP 381 (466)
T ss_pred -----HHHHHHHHHHHHHHHHHhhhcchhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCC
Confidence 111111122222223333334456789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCh--HHHHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008244 370 YPPPKLGGKEMLS--EDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASL 441 (573)
Q Consensus 370 ~~ap~~~~~~~~~--~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le~~l 441 (573)
.+||+++...... ......+..||.+||++|+|++|||+|+. +|||+|||++|++++|+.||+++..+|+.+
T Consensus 382 ~~ap~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~d~~lL~~a~~le~~~ 456 (466)
T PRK06169 382 IPAFEAGHDVPPGSGLTDWTQWTPFTYPFNLTQQPAASVPCGFTAAGLPVGLQIVGPRHSDDLVLRVARAYEQAL 456 (466)
T ss_pred CCCCCCCccCCCccchhhhhhhhcccccccccCCCeEEEecCcCCCCCceEEEEecCCCcHHHHHHHHHHHHhhc
Confidence 9999987532111 11112334589999999999999999987 899999999999999999999999999763
No 9
>PRK08310 amidase; Provisional
Probab=100.00 E-value=8.8e-86 Score=677.31 Aligned_cols=388 Identities=39% Similarity=0.657 Sum_probs=323.3
Q ss_pred cCcccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEee
Q 008244 31 KQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGK 110 (573)
Q Consensus 31 ~~~~na~~~~~~~~~~~~a~~~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gk 110 (573)
++.+||||...+. ...++..||||||||+|||+|+++|++||+||+.+.+...++.+||++|+|||+||||++||
T Consensus 4 ~~~~~a~~~~~~~-----~~~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~~~dA~vV~~L~~aGAii~GK 78 (395)
T PRK08310 4 HDPFNAFIAKPDK-----PLPHAASGPLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVGK 78 (395)
T ss_pred CCccccccccCCC-----CCCCCCCCCcCCCeEEEeeccccCCCccCCCCHHHHhcCCCCCCCHHHHHHHHHCCCEEEEe
Confidence 4688999987542 11246789999999999999999999999999998653357789999999999999999999
Q ss_pred cchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccC
Q 008244 111 TVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHM 190 (573)
Q Consensus 111 t~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~ 190 (573)
||||||+++.+|+|++||+|+||||++|+||||||||||+||+|++|+|+|||||||||+|||||||||||||+||||+.
T Consensus 79 Tn~~E~~~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~aiGtDtGGSIRiPAa~cGv~G~KPT~Grvs~~ 158 (395)
T PRK08310 79 TQTDELAFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLE 158 (395)
T ss_pred ccchHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHcCCcceEEecCCCCCeecchHhcCeeEeecCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccccccCHHHHHHHHHHhcCCCcccCCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccce
Q 008244 191 GIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLK 268 (573)
Q Consensus 191 G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~ 268 (573)
|+.|+++++|++|||+|+++|+..+++++.+.+..+...+.++.+..+.+ ...++++.++++++++.|. +.++++
T Consensus 159 G~~~~~~~~d~~Gp~arsv~D~~~~~~~l~g~~~~~~~~~~ri~~~~~~~---~~~~~~v~~a~~~a~~~L~~~~g~vv~ 235 (395)
T PRK08310 159 GVMPLAPSFDTVGWFARDIALLERVGEVLLGDDAQEFPLTQRLLIPVDLF---ALLDPAVRAALEAALARLRPHLGPAKP 235 (395)
T ss_pred CCcccccCCCeeeeeeCCHHHHHHHHHHHcCCCcccCCcCceEEEecccc---ccCCHHHHHHHHHHHHHHHHhCCceee
Confidence 99999999999999999999999999998876543333356777765433 2257899999999999884 223322
Q ss_pred eccCCccccccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 008244 269 HENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNE 348 (573)
Q Consensus 269 ~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~ 348 (573)
.++. ...+.. +...+..+...+....+..++......+++.++.++..+..++..+|.++.+.|+.
T Consensus 236 -~~~~------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~ 301 (395)
T PRK08310 236 -ASVP------PLSLDE-------WYEAFRVLQAAEAWETHGAWISSGNPQLGPGVADRFAAGAEVTADQVEAARARRAA 301 (395)
T ss_pred -ecCC------cccHHH-------HHHHHHHHHHHHHHHHHHHHHHhchhhcCHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 1100 011211 11222223334445556666666667799999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccCCCCCceeEEEeccCCcH
Q 008244 349 MRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDR 428 (573)
Q Consensus 349 ~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~ 428 (573)
+++++.++|+++|+||+||++.+||+++........+....+.||.++|++|+|+++||+|..+|||+|||+++++++|.
T Consensus 302 ~~~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisvP~g~~~glPvglQivg~~~~D~ 381 (395)
T PRK08310 302 FARELAALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERALRLLCIAGLAGLPQISLPLASVDGAPFGLSLIGPRGSDR 381 (395)
T ss_pred HHHHHHHHhcCCCEEEeCCCCCCCccCCCccchHHHHHHHHHhhceeehhcCCCeEEEECCCCCCCCEEEEEECCCCCHH
Confidence 99999999999999999999999999876433333333344568999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 008244 429 FLLDTVQNMYAS 440 (573)
Q Consensus 429 ~ll~~a~~le~~ 440 (573)
.||+++..+|++
T Consensus 382 ~lL~~a~~le~~ 393 (395)
T PRK08310 382 SLLALAQTIAAA 393 (395)
T ss_pred HHHHHHHHHHhh
Confidence 999999999964
No 10
>PRK07056 amidase; Provisional
Probab=100.00 E-value=2.9e-86 Score=693.07 Aligned_cols=413 Identities=26% Similarity=0.355 Sum_probs=338.8
Q ss_pred HhhhhhhHHHHHH-----H----Hhh--hhcCc-ccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccC
Q 008244 12 LGLGLAGILLMTK-----K----LKK--NIKQD-FGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIE 72 (573)
Q Consensus 12 ~~~~l~~~~~~~~-----~----~~~--~~~~~-~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~ 72 (573)
++.+|+++++.++ . ++| +.|+. +|||++...++++++|+ .++..||||||||+|||+|+++
T Consensus 7 ~~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~ 86 (454)
T PRK07056 7 TLAALAADLAAGRTTSRALVEAALARIADPAGEGARVFTHVDADAARAAADAADALRAAGAAPSPLAGIPVSVKDLFDVA 86 (454)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCccEEEEeCHHHHHHHHHHHHHHHhCCCCCCCcCCCeEEEEeeeccC
Confidence 6778888866544 2 233 56864 99999998777666543 3566799999999999999999
Q ss_pred CcccCCCchhhhhcCCCC-CCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCC----CCCCCCCCCChHH
Q 008244 73 GYVTGFGHPEWARTHSAA-SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPA----APSQMPGGSSSGA 147 (573)
Q Consensus 73 g~~tt~Gs~~~~~~~~~~-~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~----~~~~~~GGSSgGs 147 (573)
|++||+||+.+.+. ++ .+||++|+|||+||||++||||||||+++.+|+|++||+|+||| |++|+||||||||
T Consensus 87 G~~tt~Gs~~~~~~--~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~~~~~GGSSgGs 164 (454)
T PRK07056 87 GQVTRAGSRVLADA--PPAAADAPAVARLRRAGAVLIGRTNMTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSGA 164 (454)
T ss_pred CCccCCCChhhccC--CCCCCCHHHHHHHHHCCCEEEEeccchhHhhCCCCCCCCCCCCCCCCCCCCCCCcCCCCcchHH
Confidence 99999999998753 66 68999999999999999999999999999999999999999999 8999999999999
Q ss_pred HHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc-
Q 008244 148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA- 226 (573)
Q Consensus 148 aaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~- 226 (573)
||+||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+
T Consensus 165 AaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~vl~g~d~~d~ 244 (454)
T PRK07056 165 AVSVADGMAAAALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLARSVACCALVDAVLAGEEPVVP 244 (454)
T ss_pred HHHHHcCCCceEEeeCCCCccccchHhhCceeeccCCCccCCCCcccCccccCcccCccCCHHHHHHHHHHhcCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988765433
Q ss_pred ---CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHHH
Q 008244 227 ---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQ 301 (573)
Q Consensus 227 ---~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~ 301 (573)
..++.||++..+.+ ....++++.++++++++.|. |++|++ ++ .|.+..... +. ....+.
T Consensus 245 ~~~~~~~lrig~~~~~~--~~~~~~~v~~~~~~a~~~L~~~G~~v~~-~~--------~~~~~~~~~----~~-~~~~~~ 308 (454)
T PRK07056 245 AARPLEGLRLAVPTTVV--LDGLDATVAAAFERALKRLSAAGAIIEE-IA--------FPELAELAE----IN-AKGGFS 308 (454)
T ss_pred ccccccCcEEEEcchhh--ccCCCHHHHHHHHHHHHHHHHCCCEEEE-ec--------CcchHHHHH----HH-HhhhHH
Confidence 22445666655432 12357899999999999986 666632 22 222221111 00 001122
Q ss_pred HHHHHhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCC
Q 008244 302 RYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML 381 (573)
Q Consensus 302 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~ 381 (573)
..+....+..++....+.+.+.++.++..+..++..+|.++++.|..+++.|.++|+++|+||+||+|.+||+++.....
T Consensus 309 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~ 388 (454)
T PRK07056 309 AAESYAWHRPLLARHRDQYDPRVAARILRGEPMSAADYIDLLAARAAWIARAAARLARFDALVMPTVPIVPPRIADLEAD 388 (454)
T ss_pred HHHHHHHHHHHHhhhhhhCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCEEEECCCCCCCCCccccccc
Confidence 23444445556666667899999999999999999999999999999999999999999999999999999998753211
Q ss_pred hHHHHH---hhhhhhccccccCCceeeecCccCCCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008244 382 SEDYQN---RAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442 (573)
Q Consensus 382 ~~~~~~---~~~~~t~~~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~~a~~le~~l~ 442 (573)
...+.. .++.||.+||++|+|+||||+|..+|||+|||++|++++|..||++++.+|+.++
T Consensus 389 ~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~glPvGlqivg~~~~D~~lL~~a~~le~~l~ 452 (454)
T PRK07056 389 DAAFFRTNALLLRNPSLINFLDGCALSLPCHAPGEAPVGLMLAGAPGRDDRLLAIALAVEAVLR 452 (454)
T ss_pred chhhHHHHHHHhhcCccchhcCCCEEEEeCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 222221 2334799999999999999999889999999999999999999999999998764
No 11
>PRK07486 amidase; Provisional
Probab=100.00 E-value=1.4e-85 Score=694.28 Aligned_cols=420 Identities=22% Similarity=0.240 Sum_probs=331.7
Q ss_pred ccchhHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccC-CCCCCC-------CCCCCCCCCCceee
Q 008244 4 QSANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLL-PPPQPL-------PPKAPHPLTGLSFA 64 (573)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~-~~~~a~-------~~~~~gpL~Gvp~~ 64 (573)
|-.++..+++.+|+++++.++ + ++| +.|+.+|||++...++ ++++|+ .++..||||||||+
T Consensus 5 ~~~~~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~ 84 (484)
T PRK07486 5 PPDPIVRLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKDAALARGEYRGWLHGMPQA 84 (484)
T ss_pred ChhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCceEEEeCccHHHHHHHHHHHHHHhcCCCCCCcCCCeEE
Confidence 334566678999999976654 2 233 7799999999986533 334332 35667999999999
Q ss_pred eecccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 008244 65 VSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSS 144 (573)
Q Consensus 65 vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSS 144 (573)
|||+|+++|++||+||+.+.+ +++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||
T Consensus 85 vKD~~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSS 162 (484)
T PRK07486 85 PKDLAPTKGIRTTLGSPIFAD--QVPQEDAIVVERMRAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRSAGGSS 162 (484)
T ss_pred EecccccCCcCcccccHhhCC--CCCCCcHHHHHHHHHCCCeeEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCc
Confidence 999999999999999999876 488999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCC-CCCCCCCcccccccCHHHHHHHHHHhcCCC
Q 008244 145 SGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGII-PISTSLDTVGWFARDPKILRHVGHVLLQLP 223 (573)
Q Consensus 145 gGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~-p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~ 223 (573)
|||||+||+|++|+|+|||||||||||||||||||||||+||||+.|.+ ++++++|++|||+|+++|+..+++++.+.+
T Consensus 163 gGsAaaVAaG~~~~aiGtDtgGSIRiPAa~cGvvGlKPT~G~vs~~g~~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~d 242 (484)
T PRK07486 163 GGAAAALALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQGRVPHGPGGDVFVQQLGTEGPMGRTVEDVALLLAVQAGYD 242 (484)
T ss_pred HHHHHHHHcCCCceEeecCCCCCeecchhhhCceeecCCCCcccCCCCcccccccccccCCeeCCHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999998755 789999999999999999999999987643
Q ss_pred ccc-----------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChh
Q 008244 224 FAA-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLK 284 (573)
Q Consensus 224 ~~~-----------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~ 284 (573)
..+ ..++.||++..+.+. ....++++.++++++++.|. |++|++ . .+.+.
T Consensus 243 ~~d~~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~---------~~~~~ 311 (484)
T PRK07486 243 PRDPLSLAEDPARFAQPLEADLRGKRIAWLGDWGG-YLPMEAGVLELCEAALATLRELGCDVEA-A---------LPAFP 311 (484)
T ss_pred CCCCccccCCCcchhhHhccCCCCCEEEEeCcccC-CCCCCHHHHHHHHHHHHHHHHCCCEEEE-e---------CCCcc
Confidence 211 123456666544321 11247899999999999986 666532 1 11110
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhHHHHH--hhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCE
Q 008244 285 GFHKTNGELKNVMRLIQRYEFKNNHNEWIE--SVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGI 362 (573)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dv 362 (573)
.. . ..+.+..+...+.......++. .....+++.++.++..+..++..+|.++++.|..+++.|.++|+++|+
T Consensus 312 ~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ 386 (484)
T PRK07486 312 PE-R----LWRAWLTLRHFLVGGSLLALYRDPARRALLKPEAIWEIEGGLALTAAQVYEASVIRSAWYQALLRLFERYDF 386 (484)
T ss_pred hH-H----HHHHHHHHHHHHHHHhHHHHhccccchhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCE
Confidence 00 0 0111111111111111222221 134568899999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCC-----CChHHHHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHH
Q 008244 363 LVTPTTAYPPPKLGGKE-----MLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQN 436 (573)
Q Consensus 363 Ll~Pt~~~~ap~~~~~~-----~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~ 436 (573)
||+||+|.+||+++... .........+..+|.+||++|+|+||||+|++ +|||+|||++|++++|..||++++.
T Consensus 387 ll~Pt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~glPvGlQlvg~~~~D~~lL~~a~~ 466 (484)
T PRK07486 387 LALPTAQVFPFDAEWRWPRAIAGRAMDTYHRWMEVVVPATLAGLPAISVPVGFNAAGLPMGMQIIGPPRADLAVLQLAHA 466 (484)
T ss_pred EEcCCCCCCCCccccccccccccchhhhhhhhhcccccccccCCCeEEEECCcCCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 99999999999886421 11111122334478899999999999999987 8999999999999999999999999
Q ss_pred HHHHH
Q 008244 437 MYASL 441 (573)
Q Consensus 437 le~~l 441 (573)
+|+.+
T Consensus 467 le~~~ 471 (484)
T PRK07486 467 YEQAT 471 (484)
T ss_pred HHhcc
Confidence 99753
No 12
>PRK07042 amidase; Provisional
Probab=100.00 E-value=1.6e-85 Score=690.10 Aligned_cols=412 Identities=18% Similarity=0.157 Sum_probs=331.1
Q ss_pred hhHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecc
Q 008244 7 NLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDL 68 (573)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~ 68 (573)
++..+++.+|+++++.++ + ++| +.|+.+|||++...+.++++|+ +++..||||||||+|||+
T Consensus 3 ~~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~ 82 (464)
T PRK07042 3 ALHDLSAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGEPLGPLDGVPVTIKEN 82 (464)
T ss_pred chhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCCEEEEEcc
Confidence 355668888888876554 2 233 6799999999998877666543 356789999999999999
Q ss_pred cccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHH
Q 008244 69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA 148 (573)
Q Consensus 69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsa 148 (573)
|+|+|++||+||+.+.+ .++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||
T Consensus 83 ~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~~Lr~aGAiilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA 160 (464)
T PRK07042 83 IATRGVPVPLGTAATDL--PPAAADAPPAARLREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAG 160 (464)
T ss_pred cccCCcccCCCChhhcC--CCCCcchHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCChHHHH
Confidence 99999999999999865 4788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc--
Q 008244 149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-- 226 (573)
Q Consensus 149 aaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-- 226 (573)
|+||+|++|+|+|||||||||||||||||||||||+||||..|.+ +.|++|||||+++|+..+++++.+.+..+
T Consensus 161 aaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~Grv~~~g~~----~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~ 236 (464)
T PRK07042 161 AAAAAGYGPLHLGTDIGGSVRLPAGWCGIVGLKPSLGRIPIDPPY----TGRCAGPMTRTVDDAALLMSVLSRPDARDGT 236 (464)
T ss_pred HHHHcCCCceeeecCCCCccccchHhhCceeecCCCCccCCCCCc----cccccCCccCCHHHHHHHHHHhcCCCCCCcc
Confidence 999999999999999999999999999999999999999998843 34899999999999999999987543211
Q ss_pred --------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhh
Q 008244 227 --------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTN 290 (573)
Q Consensus 227 --------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~ 290 (573)
..++.||++..+... ....++++.++++++++.|. |++|++ ++ +.+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~---------~~~~~~---- 301 (464)
T PRK07042 237 SLPPQDIDWSDLDIDVRGLRIGLMLDAGC-GLAVDPEVRAAVEAAARRFEAAGAIVEP-VP---------PFLTRA---- 301 (464)
T ss_pred ccCCCCcChhhhccCcCCCEEEEECcccC-CCCCCHHHHHHHHHHHHHHHHCCCEEEE-eC---------CchhHH----
Confidence 113456666544321 12357899999999999986 666632 11 111110
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCC
Q 008244 291 GELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAY 370 (573)
Q Consensus 291 ~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~ 370 (573)
....+..+...+....+..+.....+.+.+.++.++..+..++..+|.++++.|..+++.|.++|+++|+||+||+|.
T Consensus 302 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~D~ll~Pt~~~ 379 (464)
T PRK07042 302 --MLDGLDRFWRARLWSDLAALPPERRAKVLPYIRRWAEGGADLSGVEAVRGFNQTFAMRAAAARLFAEFDYVLSPVAPV 379 (464)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCC
Confidence 011111111122333344444555677889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCChH-HHHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008244 371 PPPKLGGKEMLSE-DYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASL 441 (573)
Q Consensus 371 ~ap~~~~~~~~~~-~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le~~l 441 (573)
+||+++......+ ......+.||.+||++|+|+||||+|+. +|||+|||++|++++|..||+++..+|+.+
T Consensus 380 ~a~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~lL~~a~~le~~~ 452 (464)
T PRK07042 380 PAFPAEWASPTNDPARPFEHIAFTVPWNMSEQPAASINCGFTRDGLPIGLQIVGPRFDDLGVLRLAKAFEGWR 452 (464)
T ss_pred CCCCcccccccccchhhhcccccccceeccCCCeEEeecCcCCCCCCeEEEEecCCCcHHHHHHHHHHHHHhc
Confidence 9999874221111 0111223589999999999999999987 899999999999999999999999999764
No 13
>PRK06170 amidase; Provisional
Probab=100.00 E-value=2.1e-85 Score=694.76 Aligned_cols=419 Identities=21% Similarity=0.269 Sum_probs=332.2
Q ss_pred ccchhHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCCC------CCCCCCCCCceeeee
Q 008244 4 QSANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLP------PKAPHPLTGLSFAVS 66 (573)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~~------~~~~gpL~Gvp~~vK 66 (573)
-+.++..+++.+|+++++.++ + ++| +.||.+|||++...++++++|++ ....||||||||+||
T Consensus 5 ~~~~~~~~s~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~gpL~GvPv~VK 84 (490)
T PRK06170 5 AADEWSFLPATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARARGERGPLLGIPVTVK 84 (490)
T ss_pred ccchhhhcCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEECCHHHHHHHHHHHHHHHhcCCCCCcCCceEEEe
Confidence 345677789999999977655 2 233 77999999999988777666531 124699999999999
Q ss_pred cccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChH
Q 008244 67 DLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSG 146 (573)
Q Consensus 67 D~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgG 146 (573)
|+|+++|++||+||+.+.+ +++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||
T Consensus 85 D~~~v~G~~tt~Gs~~~~~--~~~~~da~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgG 162 (490)
T PRK06170 85 ESFNVAGLPTTWGFPDLRD--YVPAEDAVAVARLKAAGAVILGKTNVPLGLQDWQSYNEIYGTTNNPWDLARTPGGSSGG 162 (490)
T ss_pred cccccCCcccCCCChhhcC--CCCCccHHHHHHHHHCCCEEEEecCChhhccCCCccCCCCCCCCCCCCCCCCCCCChHH
Confidence 9999999999999999876 48899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCC-----C--CCCCCcccccccCHHHHHHHHHHh
Q 008244 147 AAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIP-----I--STSLDTVGWFARDPKILRHVGHVL 219 (573)
Q Consensus 147 saaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p-----~--~~~~d~~G~~ar~~~d~~~v~~~~ 219 (573)
|||+||+|++|+|+|||||||||||||||||||||||+||||+.|++| + +.++|++|||+|+++|+..+++++
T Consensus 163 sAaAVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~Grv~~~G~~~~~~~~~~~~~~~d~~Gp~arsv~D~a~~l~~l 242 (490)
T PRK06170 163 SAAALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARDLALLLDVM 242 (490)
T ss_pred HHHHHHcCCCceeeecCCCCccccChHHhCceeecCCCCcCcCCCcCCccccccccccccccccCccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988 4 346899999999999999999998
Q ss_pred cCCCccc---------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCC
Q 008244 220 LQLPFAA---------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPS 282 (573)
Q Consensus 220 ~~~~~~~---------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~ 282 (573)
.+.+..+ ..++.||++..+.+. ...++++.++++++++.|. |++|++. + ...|.
T Consensus 243 ~g~d~~d~~~~~~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~~-~------~~~~~ 313 (490)
T PRK06170 243 AGPDPLDGGVAYRLALPPARHGRLKDFRVLVLDEHPL--LPTDAAVRAAIERLAAALADAGARVVRH-S------PLLPD 313 (490)
T ss_pred hCCCccccccccccCCCcccccccCCCEEEEECCcCC--CCCCHHHHHHHHHHHHHHHHCCCEEEEc-C------CCCCc
Confidence 7643221 113456666554331 2357899999999999986 7766431 1 01122
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhhH-HHHHh------hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHh
Q 008244 283 LKGFHKTNGELKNVMRLIQRYEFKNNHN-EWIES------VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISS 355 (573)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~~~~e~~~~~~-~~~~~------~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~ 355 (573)
+... ...+..+...+....+. .+... ....+.+.++.++..+..++..+|.++++.|..++++|.+
T Consensus 314 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~ 386 (490)
T PRK06170 314 LAES-------ARLYMRLLFAASAARFPPDAYADAQARAAGLSADDRSLAAERLRGAVLSHRDWLFADAAREELRAAWRR 386 (490)
T ss_pred hHHH-------HHHHHHHHHHHHhhccchhHHHHhhhccccccchhHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 2211 11111111111111110 11111 1234567777778888889999999999999999999999
Q ss_pred hcCCCCEEEEcCCCCCCCCCCCCCCC------h----HHHHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEecc
Q 008244 356 LLKDDGILVTPTTAYPPPKLGGKEML------S----EDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARH 424 (573)
Q Consensus 356 ~~~~~DvLl~Pt~~~~ap~~~~~~~~------~----~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~ 424 (573)
+|+++|+||+||+|.+||+++..... . ..+. ..+.||.++|++|+|++|||+|+. +|||+|||++|++
T Consensus 387 ~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQlig~~ 465 (490)
T PRK06170 387 FFAEFDVVLCPVTPTPAFPHDHAPDPLERRIDIDGVSYPYW-DQLVWAGLATLPGLPATAIPIGLSATGLPVGVQIVGPA 465 (490)
T ss_pred HHhcCCEEEeCCCCCCCCCCCccccccccccccCCcccchh-hhhhhcceecccCCCeEEEECCcCCCCCceeEEEecCC
Confidence 99999999999999999999753110 0 0111 223589999999999999999997 8999999999999
Q ss_pred CCcHHHHHHHHHHHHHH
Q 008244 425 GGDRFLLDTVQNMYASL 441 (573)
Q Consensus 425 ~~d~~ll~~a~~le~~l 441 (573)
++|..||+++..+|+.+
T Consensus 466 ~~D~~LL~~a~~lE~~~ 482 (490)
T PRK06170 466 LEDRTPLRLAELLEEEF 482 (490)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999999764
No 14
>PRK07235 amidase; Provisional
Probab=100.00 E-value=1.6e-84 Score=684.04 Aligned_cols=400 Identities=22% Similarity=0.279 Sum_probs=320.7
Q ss_pred hhcCcccceeeccccCCCCCC------CCCCCCCCCCCceeeeecccccCCcccCCCchhhhhcCCCCCCChHHHHHHHh
Q 008244 29 NIKQDFGAFIEKLQLLPPPQP------LPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVE 102 (573)
Q Consensus 29 ~~~~~~na~~~~~~~~~~~~a------~~~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~ 102 (573)
++++..|+++....++++..| .+++..|||+||||+|||||+++|++||+||+.+.+ ++|.+||++|+||++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~~~gpL~GvPiavKD~i~v~G~ptt~Gs~~~~~--~~p~~DA~vV~rL~~ 130 (502)
T PRK07235 53 PVKYPRTPGYRPEAEENPYGAWYVKTSIKGAAEGKLAGKTVALKDNVAVAGVPMMNGSSTLEG--FVPSFDATVVTRLLD 130 (502)
T ss_pred ccCCCcccccccCcccChhcChhhhhccCCCCCCCcCCceEEEecccccCCcccCccChhhcC--CCCCCCHHHHHHHHH
Confidence 667888999988777664433 246778999999999999999999999999999986 489999999999999
Q ss_pred CCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccccC
Q 008244 103 GGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRP 182 (573)
Q Consensus 103 aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkP 182 (573)
||||++||||||||+++.+++|++||+|+||||++|+||||||||||+||+|++|+|+||||||||||||||||||||||
T Consensus 131 AGAii~GKTn~~Ef~~~~~t~n~~~G~t~NP~~~~~~~GGSSgGsAAaVAaG~v~~aiGtDtGGSIRiPAa~cGvvGlKP 210 (502)
T PRK07235 131 AGATIVGKATCEDLCFSGGSHTSDPGPVHNPRDPGYSAGGSSSGSAALVAAGEVDMAIGGDQGGSIRIPSAWCGIYGMKP 210 (502)
T ss_pred CCCEEEEEecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCCeEEecCCCCCcCccHHHcCcceecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCcccC------------------CCCceEEEcccchhhcC
Q 008244 183 SYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ------------------RSPRQIIIADDCFELLK 244 (573)
Q Consensus 183 T~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~------------------~~~~rl~i~~~~~~~~~ 244 (573)
|+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+. .++.||++..+.+.. .
T Consensus 211 T~G~vp~~G~~~~~~sld~~Gpmarsv~D~a~ll~viag~d~~d~~~~~~~~~~~~~~~l~~~~~~lrIgv~~~~~~~-~ 289 (502)
T PRK07235 211 THGLVPYTGAFPIERTIDHLGPMTATVRDNALLLEVIAGRDGLDPRQPAQPPVDDYTAALDRGVKGLKIGILREGFGL-P 289 (502)
T ss_pred CCcccCCCCCCCcccccCeeeceeCCHHHHHHHHHHHcCCCCCCccccccCCccchhHHhccCCcCCEEEEeccccCC-C
Confidence 999999999999999999999999999999999999876532221 233466665543321 2
Q ss_pred CChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhH-HH-HHH-HHH------------HHHHHh
Q 008244 245 IPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGEL-KN-VMR-LIQ------------RYEFKN 307 (573)
Q Consensus 245 ~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l-~~-~~~-~~~------------~~e~~~ 307 (573)
..++++.++++++++.|. |++|++ +++ |...........+ .. ... .+. ..+...
T Consensus 290 ~~~~~v~~a~~~a~~~L~~~G~~V~~-v~~--------p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 360 (502)
T PRK07235 290 NSEPEVDEAVRAAAKRLEDLGATVEE-VSI--------PLHRLALAIWNPIATEGATAQMMLGNGYGFNWKGLYDTGLLD 360 (502)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CchhhHHHHHHHHHHHHHHHHhhhccccccccccccchhHHH
Confidence 247889999999999886 666632 222 2111000000000 00 000 000 001111
Q ss_pred hhHHHHHhhCCCCCHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCChH
Q 008244 308 NHNEWIESVKPALDPDISAEIGEML----EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSE 383 (573)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~g~----~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~ 383 (573)
.+..+...+...+++.++.++..|. .++..+|.++++.|..+++.|+++|+++|+||+||+|.+||+++....+..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~y~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~ 440 (502)
T PRK07235 361 AFGAGWRERADDLSETVKLVMLLGQYGLERYHGRYYAKARNLARRLRAAYDEALRKYDLLVMPTTPMVATPLPAPDASRE 440 (502)
T ss_pred HHhhhhhcchhhcCHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeeCCCCCCCCCcccccCchH
Confidence 2222233445678999999988775 467889999999999999999999999999999999999999976433333
Q ss_pred HHHH---hhhhhhccccccCCceeeecCccCCCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008244 384 DYQN---RAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (573)
Q Consensus 384 ~~~~---~~~~~t~~~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~~a~~le~~ 440 (573)
.+.. .++.||.+||++|+|++|||+|+.+|||+|||++|++++|..||+++.++|+.
T Consensus 441 ~~~~~~~~~~~~t~~~Nl~G~PalsvP~g~~~GlPvGlQlvg~~~~D~~lL~~A~~~E~~ 500 (502)
T PRK07235 441 EYVSRALEMIANTAPFDVTGHPAMSVPCGLVDGLPVGLMLVGRHFDEATILRAAAAFEAS 500 (502)
T ss_pred HHHHHHHhhhccCccchhhCCCeEEEECCcCCCCCeEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 3332 23458999999999999999999999999999999999999999999999964
No 15
>PRK12470 amidase; Provisional
Probab=100.00 E-value=1.7e-85 Score=688.02 Aligned_cols=412 Identities=22% Similarity=0.272 Sum_probs=326.6
Q ss_pred hhHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecc
Q 008244 7 NLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDL 68 (573)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~ 68 (573)
++..+++.+|+++++.++ + ++| +.||.+|||++...++++++|+ .+... ||+||||+|||+
T Consensus 5 ~~~~~s~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~g~~~-pL~GvPi~vKD~ 83 (462)
T PRK12470 5 DLAFAGAAAQARMLADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGERL-PLLGVPIAIKDD 83 (462)
T ss_pred hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEeCHHHHHHHHHHhHHHHhcCCCC-CcCCCeEEEecC
Confidence 356678999999976554 3 233 7799999999998877666543 23445 999999999999
Q ss_pred cccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHH
Q 008244 69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA 148 (573)
Q Consensus 69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsa 148 (573)
|+++|++||+||+.+ . +++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||
T Consensus 84 ~~v~G~~tt~Gs~~~-~--~~~~~dA~vV~rLr~aGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA 160 (462)
T PRK12470 84 VDVAGEVTTYGSAGH-G--PAATSDAEVVRRLRAAGAVIIGKTNVPELMIMPFTESLAFGATRNPWDPNRTPGGSSGGSA 160 (462)
T ss_pred cccCCceeCCCCccc-C--CCCCccHHHHHHHHHCCCeEEEEeChHhHhcCCCCCCCCCCCCCCCCCCCCCCCcchhHHH
Confidence 999999999999974 3 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc--
Q 008244 149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-- 226 (573)
Q Consensus 149 aaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-- 226 (573)
|+||+|++|+|+|||||||||||||||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+
T Consensus 161 aAVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~ld~~Gp~ar~v~D~a~~~~vl~~~~~~~~~ 240 (462)
T PRK12470 161 AAVAAGLAPVALGSDGGGSIRIPSTWCGLFGLKPQRDRISLEPHDGAWQGLSVNGPIARSVMDAALLLDATTTVPGPEGE 240 (462)
T ss_pred HHHHcCCCceEEecCCCCchhhchhhhCceeecCCCCCcCCCCCCCcccCccccCCeeCCHHHHHHHHHHhcCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887533211
Q ss_pred -------CCCCceEEEcccchh-hcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHH
Q 008244 227 -------QRSPRQIIIADDCFE-LLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNV 296 (573)
Q Consensus 227 -------~~~~~rl~i~~~~~~-~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~ 296 (573)
..++.||++..+.+. .....++++.++++++++.|. |++|++ .+ |.+...... .+...
T Consensus 241 ~~~~~~~~~~~lrig~~~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~---------~~~~~~~~~--~~~~~ 308 (462)
T PRK12470 241 FVAAAAREPGRLRIALSTRVPTPLPVRCGKQELAAVHQAGALLRDLGHDVVV-RD---------PDYPAATYA--NYLPR 308 (462)
T ss_pred hhhhhccCCCCCEEEEECCccccCCCCCCHHHHHHHHHHHHHHHhCCCEEEE-eC---------CCchhHHHH--HHHHH
Confidence 123456666544321 112357899999999999986 666532 11 111110000 00000
Q ss_pred HHHHHHHHHHhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCC
Q 008244 297 MRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG 376 (573)
Q Consensus 297 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~ 376 (573)
+ . ...... .....+...+++.++.++..|..++..+|.....++..++++|.++|+++|+||+||+|.+||+++
T Consensus 309 ~--~---~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~p~~ap~~~ 382 (462)
T PRK12470 309 F--F---RGISDD-ADAQAHPDRLEARTRAIARLGSFFSDRRMAALRAAEVVLSARIQSIFDDVDVVVTPGTATGPSRIG 382 (462)
T ss_pred H--H---HHHHHh-hccccChhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCCCCCCCCCC
Confidence 0 0 000000 111223456889999999999999998888555556699999999999999999999999999987
Q ss_pred CCCCC--hHHH--HHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008244 377 GKEML--SEDY--QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (573)
Q Consensus 377 ~~~~~--~~~~--~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le~~ 440 (573)
..... ...+ ...+..||.++|++|+|+||||+|++ +|||+|||++|++++|..||+++..+|+.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlqlvg~~~~D~~LL~~A~~le~~ 451 (462)
T PRK12470 383 AYQRRGAVSTLLLVVQRVPYFQVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATLLALAAQIESA 451 (462)
T ss_pred ccCCCcchhhhhhhhhccCcCccchhcCCCeEEEecCcCCCCCceEEEEECCCCcHHHHHHHHHHHHcc
Confidence 53211 1111 12334589999999999999999998 89999999999999999999999999975
No 16
>PRK07488 indole acetimide hydrolase; Validated
Probab=100.00 E-value=9.6e-85 Score=685.74 Aligned_cols=414 Identities=25% Similarity=0.348 Sum_probs=330.2
Q ss_pred chhHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeec
Q 008244 6 ANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSD 67 (573)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD 67 (573)
.++..+++.+|+++++.++ + ++| +.+ .+|||++...++++++|+ .+...+ ||||||+|||
T Consensus 6 ~~~~~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~-~lna~~~~~~~~al~~A~~~d~~~~~g~~~g-L~GvPi~vKD 83 (472)
T PRK07488 6 PDVASLSLTEAAAALRSGRLSCLELVEALLARAAALA-PLNAFTTVDAEGALAAARRIDAQRAAGAALL-LAGVPIVIKD 83 (472)
T ss_pred hhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-cCCEEEEcCHHHHHHHHHHHHHHHhcCCCCC-cCceEEEEEc
Confidence 4577789999999976654 2 233 334 699999998877666543 244456 9999999999
Q ss_pred ccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHH
Q 008244 68 LFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGA 147 (573)
Q Consensus 68 ~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGs 147 (573)
+|+++|++||+||+.+.+ +++.+||++|+|||+||||++||||||||+++.+|+|.+||+|+||||++|+||||||||
T Consensus 84 ~~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGs 161 (472)
T PRK07488 84 NINTAGMPTTAGTPALLG--FVPATDAPVVQRLLDAGAVPLGKANMHELAFGITSNNGAFGAVRNPYDPARIAGGSSGGT 161 (472)
T ss_pred ccccCCCccCcCChhhcc--CCCCCCHHHHHHHHHCCCeeeeccChhHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHH
Confidence 999999999999999876 378899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc-
Q 008244 148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA- 226 (573)
Q Consensus 148 aaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~- 226 (573)
||+||+|++|+|+|||||||||+|||||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+
T Consensus 162 AaaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~G~~p~~~~~d~~Gp~arsv~D~a~~~~vl~g~d~~~~ 241 (472)
T PRK07488 162 AAAVAARLAPAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIARSVADLALLDAVITGDAALPA 241 (472)
T ss_pred HHHHHcCCCceeeecCCCCCeecChHhhCceeeccCCCCCCCCCcccccccCCcccCccCCHHHHHHHHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988654322
Q ss_pred --CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHHHH
Q 008244 227 --QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQR 302 (573)
Q Consensus 227 --~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~~ 302 (573)
+.++.||++..+.+ ....++++.++++++++.|. |++|++ .+ .|.+.++.. .....+..
T Consensus 242 ~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~--------~~~~~~~~~------~~~~~~~~ 304 (472)
T PRK07488 242 PVALAGLRLGVPAAPF--WDGLDPDVAAVAEAALAKLAAAGVTFVE-LD--------LPGLHELNE------AVGFPIAL 304 (472)
T ss_pred CcCcCCCEEEEEcchh--ccCCCHHHHHHHHHHHHHHHHCCCEEEe-eC--------CcCHHHHhh------hHHHHHHH
Confidence 23456777654332 23347899999999999886 776632 22 222221100 01111222
Q ss_pred HHHHhhhHHHHHhhCC----------CCCHHHHHHHHHh---hcCCHHHHHHHHHH-HHHHHHHHHhhcC--CCCEEEEc
Q 008244 303 YEFKNNHNEWIESVKP----------ALDPDISAEIGEM---LEISETVIENCKSI-RNEMRSAISSLLK--DDGILVTP 366 (573)
Q Consensus 303 ~e~~~~~~~~~~~~~~----------~~~~~~~~~~~~g---~~~s~~~~~~a~~~-r~~~~~~~~~~~~--~~DvLl~P 366 (573)
++....+..++..... ..++.++.+++.+ ..++..+|.++++. |..+++.|.++|+ ++|+||+|
T Consensus 305 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~~~~~~~~~~~~~~D~ll~P 384 (472)
T PRK07488 305 YEALADLRAYLRENGAGVSFEELVARIASPDVRAIFRDLLDPPQISEDAYRAALDVGRPRLQAWYRQAFARHGLDAILFP 384 (472)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHhhccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEeC
Confidence 3333444444332221 2257776665433 46789999999888 9999999999998 78999999
Q ss_pred CCCCCCCCCCCCCC------ChHHHHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHHH
Q 008244 367 TTAYPPPKLGGKEM------LSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYA 439 (573)
Q Consensus 367 t~~~~ap~~~~~~~------~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le~ 439 (573)
|+|.++|+++.... ....+ ..+..||.++|++|+|+||||+|++ +|||+|||++|++++|..||+++..+|+
T Consensus 385 t~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlig~~~~d~~LL~~A~~lE~ 463 (472)
T PRK07488 385 TTPLTAPPIGDDDTVILNGAAVPTF-ARVIRNTDPASNAGLPGLSLPAGLTPHGLPVGLELDGPAGSDRRLLAIGRALER 463 (472)
T ss_pred CCCCCCccccccccccccccchhhh-hhhhcccccccccCCCeEEEecCCCCCCCCeeEEEeCCCCCHHHHHHHHHHHHH
Confidence 99999999975311 11222 2344579999999999999999997 8999999999999999999999999997
Q ss_pred HH
Q 008244 440 SL 441 (573)
Q Consensus 440 ~l 441 (573)
.+
T Consensus 464 ~~ 465 (472)
T PRK07488 464 VL 465 (472)
T ss_pred hh
Confidence 53
No 17
>PRK06061 amidase; Provisional
Probab=100.00 E-value=5.6e-85 Score=687.82 Aligned_cols=416 Identities=23% Similarity=0.270 Sum_probs=330.3
Q ss_pred CccchhHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCCC------CCCCCCCCCceeee
Q 008244 3 SQSANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLP------PKAPHPLTGLSFAV 65 (573)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~~------~~~~gpL~Gvp~~v 65 (573)
|.+-++-.+++.+|+++++.++ + ++| +.||.+|||++...++++++|++ ....+|||||||+|
T Consensus 10 ~~~~~~~~~s~~~l~~~l~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~pL~GvPv~v 89 (483)
T PRK06061 10 SGSGNDRLPGLTDQAYQLASGAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGDRLPLLGVPIAV 89 (483)
T ss_pred cCCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCCEEEEeChHHHHHHHHHHHHHHhcCCCCCcCCCeEEE
Confidence 4456677788999999977654 2 233 77899999999988877665532 11235999999999
Q ss_pred ecccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCh
Q 008244 66 SDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSS 145 (573)
Q Consensus 66 KD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSg 145 (573)
||+|+++|++||+||... ..++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+||||||
T Consensus 90 KD~~~v~G~~tt~Gs~~~---~~~a~~dA~vV~~Lr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSg 166 (483)
T PRK06061 90 KDDVDVAGVPTAFGTAGE---VPPATADSEVVRRLRAAGAVIVGKTNTCELGQWPFTSGPAFGHTRNPWSRDHTPGGSSG 166 (483)
T ss_pred EcccccCCceecCCCccc---CCCCCCCHHHHHHHHHCCCEEEEecCcchhccCCCCCCCCCCCCCCCCCCCCCCCCChH
Confidence 999999999999999842 23457999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCcc
Q 008244 146 GAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFA 225 (573)
Q Consensus 146 GsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~ 225 (573)
||||+||+|++|+|+||||||||||||+||||||||||+||||+.|+.+.+.++|++|||+|+++|+..+++++.+.+..
T Consensus 167 GsAaAVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~ 246 (483)
T PRK06061 167 GSAAAVAAGLVTAAIGSDGAGSVRIPAAWTHLVGIKPQRGRISTWPLPEAFNGLTVNGPLARTVADAALLLDAASGNHPG 246 (483)
T ss_pred HHHHHHHcCCCceEeecCCCCcchhchhhcCceeecCCCCccCCCCCCcccccCceeCCEeCCHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999988754321
Q ss_pred c---------------CCCCceEEEcccchh--hcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhh
Q 008244 226 A---------------QRSPRQIIIADDCFE--LLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGF 286 (573)
Q Consensus 226 ~---------------~~~~~rl~i~~~~~~--~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~ 286 (573)
+ ..++.||++..+... .....++++.++++++++.|. |++|++ .+ +.+...
T Consensus 247 d~~~~~~~~~~~~~~~~~~~lrig~~~~~~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~~-~~---------~~~~~~ 316 (483)
T PRK06061 247 DRHRPPPVTVSDAVGRAPGPLRIALSTRFPFTGFPAKLHPEIRAAVRRVAEQLALLGHTVVP-AD---------PDYGLR 316 (483)
T ss_pred CCcccCCccchhhhccCCCCcEEEEECCccccccccCCCHHHHHHHHHHHHHHHHCCCEEEE-eC---------CchhhH
Confidence 1 113345555433211 112357899999999999985 666532 11 111100
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhHHHHHh--hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEE
Q 008244 287 HKTNGELKNVMRLIQRYEFKNNHNEWIES--VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILV 364 (573)
Q Consensus 287 ~~~~~~l~~~~~~~~~~e~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl 364 (573)
.. ..... .....+..+... ....+++.++.++..+..++..+|.++++.|..+++.|.++|+++|+||
T Consensus 317 ~~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll 386 (483)
T PRK06061 317 LG----LNFLP------RSTAGLRDWAERLGDPVLLDPRTVSNARMGRLLSQAILRLARAAEAAAQRRVGSIFDIVDVVL 386 (483)
T ss_pred HH----HHHHH------HHHHHHHHHHhhccChhhCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence 00 00000 000111222222 2346789999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCCCCCCCCC-h---HHHHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHHH
Q 008244 365 TPTTAYPPPKLGGKEML-S---EDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYA 439 (573)
Q Consensus 365 ~Pt~~~~ap~~~~~~~~-~---~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le~ 439 (573)
+||+|.+||+++..... . ......+..||.+||++|+|+||||+|.. +|||+|||++|++++|..||+++..+|+
T Consensus 387 ~Pt~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~LL~~A~~le~ 466 (483)
T PRK06061 387 APTTAQPPPRVGAFDRLGGWATDRAMIAACPYTWPWNVLGWPSINVPAGFTSDGLPIGAQLMGPANSEPLLISLAAQLEA 466 (483)
T ss_pred cCCCCCCCCCcccccccccchhhhhhhhcccccccccccCCCeEEEecCcCCCCCCeeeEEECCCCCHHHHHHHHHHHHh
Confidence 99999999999753211 0 00111233489999999999999999987 8999999999999999999999999997
Q ss_pred HH
Q 008244 440 SL 441 (573)
Q Consensus 440 ~l 441 (573)
++
T Consensus 467 ~~ 468 (483)
T PRK06061 467 VS 468 (483)
T ss_pred hc
Confidence 64
No 18
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.
Probab=100.00 E-value=2.9e-85 Score=689.05 Aligned_cols=395 Identities=26% Similarity=0.349 Sum_probs=312.3
Q ss_pred hhcCcccceeeccccCCCCCCCCCCC--CCCCCCceeeeecccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCe
Q 008244 29 NIKQDFGAFIEKLQLLPPPQPLPPKA--PHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGAT 106 (573)
Q Consensus 29 ~~~~~~na~~~~~~~~~~~~a~~~~~--~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai 106 (573)
+.|+.+|||++...++++++|++... .||||||||+|||+|+++|++||+||+.+++ +++.+||++|+|||++|||
T Consensus 25 ~~~~~~na~~~~~~~~al~~A~~~d~~~~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~~L~~aGAi 102 (460)
T TIGR00132 25 ANKDKINAFLEVTVEKALKQAKKLDKAILTPLAGIPIAVKDNISTKGIVTTCASKILEN--YIPPYDATVIERLKQAGAL 102 (460)
T ss_pred HhcccCCeEEEcCHHHHHHHHHHHHHhccCCcCCcEEEEecccccCCcccCcCChhhcc--CCCCCchHHHHHHHHCCCE
Confidence 77999999999988776666543221 2899999999999999999999999999876 3788999999999999999
Q ss_pred EEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCc
Q 008244 107 CIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGA 186 (573)
Q Consensus 107 ~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~ 186 (573)
++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+|++|+|+|||||||||+||+||||||||||+||
T Consensus 103 i~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSIRiPAa~cGv~G~KPT~G~ 182 (460)
T TIGR00132 103 IIGKTNMDEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGSIRQPASFCGVVGFKPTYGR 182 (460)
T ss_pred EEEEechhHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCCeEeecCCCCcchhhhHhcCceeECCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc-----------------CCCCceEEEcccchhhcCCChHH
Q 008244 187 VSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADR 249 (573)
Q Consensus 187 v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-----------------~~~~~rl~i~~~~~~~~~~~~~~ 249 (573)
||+.|++|+++++|++|||+|+++|+..+++++.+.+..+ ..++.||++..+.+. ..+++
T Consensus 183 vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~~~~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~~---~~~~~ 259 (460)
T TIGR00132 183 VSRYGLVAYASSLDQIGPFARTVEDIALLLDVISGHDKRDSTSAKVPDPEFFEELKKDLKGLKVGVVKEFSE---EMDKE 259 (460)
T ss_pred CCCCCCcCcccCCCcccCeeCCHHHHHHHHHHHcCCCCCCCcccCCCccchhhhhhcccCCCEEEEECcccc---cCCHH
Confidence 9999999999999999999999999999999987643221 123456666544332 24788
Q ss_pred HHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhH--HHHHHHHHHHH---------HHhhhHHHHHh-
Q 008244 250 VVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGEL--KNVMRLIQRYE---------FKNNHNEWIES- 315 (573)
Q Consensus 250 ~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l--~~~~~~~~~~e---------~~~~~~~~~~~- 315 (573)
+.++++++++.|. |++|++ ++ .|.+.........+ .+....+..++ ....+.+++..
T Consensus 260 v~~a~~~a~~~L~~~G~~v~~-~~--------~p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (460)
T TIGR00132 260 VQEKFENALEVLEELGAEIVE-VS--------FPHVKYALPIYYIISPSEASSNLARYDGIRYGYRIEEPNSLKELYAKT 330 (460)
T ss_pred HHHHHHHHHHHHHHCCCEEEE-eC--------CCcHHHHHHHHHHHHHHHHHHHHhccccccccccccccccHHHHHhhc
Confidence 9999999999886 776632 22 22222111100000 00000000000 00112233332
Q ss_pred hCCCCCHHHHHHHHHhhcCC-----HHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCC-hHHHHHhh
Q 008244 316 VKPALDPDISAEIGEMLEIS-----ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML-SEDYQNRA 389 (573)
Q Consensus 316 ~~~~~~~~~~~~~~~g~~~s-----~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~-~~~~~~~~ 389 (573)
....+++.++.++..+...+ ..+|.++++.|..+++.|.++|+++|+||+||+|.+||+++..... ...+. .
T Consensus 331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~--~ 408 (460)
T TIGR00132 331 RAEGFGEEVKRRIMLGNYALSAGYYDKYYLKAQKVRTLIIDDFLKLFEEVDVIVSPTAPTLPFKIGEKLDDPLEMYL--S 408 (460)
T ss_pred chhhcCHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCchHhhhc--c
Confidence 23457788888887665444 3448899999999999999999999999999999999999754221 11221 1
Q ss_pred hhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHHH
Q 008244 390 FSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYA 439 (573)
Q Consensus 390 ~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le~ 439 (573)
..||.+||++|+|++|||+|+. +|+|+|||++|++++|..||+++..+|+
T Consensus 409 ~~~t~~~nl~g~PaisvP~g~~~~GlPvGlqlig~~~~D~~lL~~A~~le~ 459 (460)
T TIGR00132 409 DILTVPANLAGLPAISVPCGVKEKGLPIGLQIIGKCFDDKTLLQVSYAFEQ 459 (460)
T ss_pred cceeccccccCCCcEEEecCcCCCCCCeeEEEECCCCchHHHHHHHHHHhh
Confidence 1379999999999999999998 8999999999999999999999999985
No 19
>PRK06529 amidase; Provisional
Probab=100.00 E-value=3.8e-84 Score=682.96 Aligned_cols=411 Identities=18% Similarity=0.227 Sum_probs=321.9
Q ss_pred HhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCCCCCC-CCCCCCceeeeecc-cccCCcccCC
Q 008244 12 LGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKA-PHPLTGLSFAVSDL-FDIEGYVTGF 78 (573)
Q Consensus 12 ~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~~~~~-~gpL~Gvp~~vKD~-~~~~g~~tt~ 78 (573)
++.+|+++++.++ + ++| +.||.+|||++...++++++|++... .+|||||||+|||+ |+++|++||+
T Consensus 5 ~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~PL~GvPi~vKD~~~~v~G~~tt~ 84 (482)
T PRK06529 5 DATAMAQAVQQGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDFSGKPFAGVPIFLKDLGQELKGQLSTS 84 (482)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHhccccCCCcCCCeEEEecCCcccCCCccCc
Confidence 5677777765543 3 233 67999999999988777666543322 25999999999998 7999999999
Q ss_pred CchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCcc
Q 008244 79 GHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDF 158 (573)
Q Consensus 79 Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~ 158 (573)
||..+++ +++.+||++|+|||+||||++||||||||+++.+|.|++||+|+||||++|+||||||||||+||+|++|+
T Consensus 85 Gs~~~~~--~~~~~Da~vV~rLr~AGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~ 162 (482)
T PRK06529 85 GSRLFKN--YQATKTDLYVKRLEDLGFIILGRSNTPEFGFKNISDSSLHGPVNLPFDNSRNAGGSSGGAAALVSSGIVAL 162 (482)
T ss_pred chHHhcC--CCCCcchHHHHHHHHCCCeEEEecCchHhhcCCCCCCcCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCce
Confidence 9999886 48899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcc-cccccCHHHHHHHHHHhcCCCcccC----------
Q 008244 159 SLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTV-GWFARDPKILRHVGHVLLQLPFAAQ---------- 227 (573)
Q Consensus 159 a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~-G~~ar~~~d~~~v~~~~~~~~~~~~---------- 227 (573)
|+|||||||||+|||||||||||||+||||..+..+.+++.|++ |||+|+++|+..+++++.+.+..++
T Consensus 163 aiGtDtgGSIRiPAa~cGvvGlKPT~Grvp~~~~~~~~~~~~~~~Gpiarsv~D~a~~l~~~~g~~~~~~~~~~~~~~~~ 242 (482)
T PRK06529 163 AAASDGGGSIRIPASFNGLIGLKPSRGRIPVGPGSYRGWQGASVHFALTKSVRDTRRLLYYLQMYQMESPFPLATLSKES 242 (482)
T ss_pred eeecCCCCCeecChHhhCceeEccCCCccCCCCCCccccccccccCCccCcHHHHHHHHHHhhCCCCCCCcccCCcccch
Confidence 99999999999999999999999999999987765556666666 7999999999999998765331110
Q ss_pred -----CCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCC-ChhhhhhhhhhHHHHHHH
Q 008244 228 -----RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVP-SLKGFHKTNGELKNVMRL 299 (573)
Q Consensus 228 -----~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p-~~~~~~~~~~~l~~~~~~ 299 (573)
.++.||++..+.+. ....++++.++++++++.|. |++|++. + ..| .+... ...+..
T Consensus 243 ~~~~~~~~lrIg~~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G~~v~ev-~-------~~p~~~~~~-------~~~~~~ 306 (482)
T PRK06529 243 LFQSLQRPLKIAFYQRSPD-GSPVSLDAAKALKQAVTFLREQGHEVVEL-E-------EFPLDMTEV-------MRSYYI 306 (482)
T ss_pred hccccCCCCEEEEECCCCC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEc-C-------CCCCCHHHH-------HHHHHH
Confidence 13346666543321 12357899999999999986 6666431 1 012 12211 111222
Q ss_pred HHHHHHHhhhHHHHHhh-----CCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCC
Q 008244 300 IQRYEFKNNHNEWIESV-----KPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPK 374 (573)
Q Consensus 300 ~~~~e~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~ 374 (573)
+...+....+..+.... ...+++.++.++..|..++..+|.++++.|..++++|.++|+++|+||+||+|.+||+
T Consensus 307 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~a~~ 386 (482)
T PRK06529 307 MNSVETAAMFDDIEDALGRPMTKDDMETMTWAIYQSGQDIPAKRYSQVLQKWDTYSATMASFHETYDLLLTFTTNTPAPK 386 (482)
T ss_pred HHHHHHHHHHHHHHHhcCCCCChhhcCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEcCCCCCCCCC
Confidence 22223332233322111 2246777777777888899999999999999999999999999999999999999999
Q ss_pred CCCCCCCh----------------------HHHH--HhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHH
Q 008244 375 LGGKEMLS----------------------EDYQ--NRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRF 429 (573)
Q Consensus 375 ~~~~~~~~----------------------~~~~--~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ 429 (573)
++...... ..+. ..++.||.+||++|+|+||||+|.. +|||+|||++|++++|..
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~ 466 (482)
T PRK06529 387 HGQLDPDSKLMANLAQAEIFSSEEQQNLVETMFEKSLAITPYTALANLTGQPAISLPTYETKEGLPMGVQLIAAKGREDL 466 (482)
T ss_pred CCccCcccchhhhccccccccchhhhhhhhhhhhhhhhcccccccccccCCCeEEeecCcCCCCCceeEEEecCCCcHHH
Confidence 87532110 0111 1234589999999999999999987 899999999999999999
Q ss_pred HHHHHHHHHHH
Q 008244 430 LLDTVQNMYAS 440 (573)
Q Consensus 430 ll~~a~~le~~ 440 (573)
||+++..+|+.
T Consensus 467 lL~~a~~le~~ 477 (482)
T PRK06529 467 LLGIAEQFEAA 477 (482)
T ss_pred HHHHHHHHHhc
Confidence 99999999964
No 20
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed
Probab=100.00 E-value=1.8e-84 Score=682.88 Aligned_cols=394 Identities=24% Similarity=0.342 Sum_probs=311.4
Q ss_pred hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccCCcccCCCchhhhhcCCCCCCChHHHHHHH
Q 008244 29 NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLV 101 (573)
Q Consensus 29 ~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~ 101 (573)
+.||.+|||++...++++++|+ .++ .||||||||+|||+|+++|++||+||..+.+ +++.+|+++|+|||
T Consensus 21 ~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~-~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~~--~~~~~da~vV~~Lr 97 (459)
T PRK00012 21 EVDPKLNAFITVTEEEALAQAKAADAKLAAGE-AGPLAGIPIAIKDNICTKGIRTTCASKILEN--YVPPYDATVVEKLK 97 (459)
T ss_pred HhcccCCeEEEeCHHHHHHHHHHHHHHHhcCC-CCccCCeEEEEecccccCCCccCccCHhhcc--CCCCcchHHHHHHH
Confidence 7799999999998877666543 234 7999999999999999999999999999876 48899999999999
Q ss_pred hCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCccccc
Q 008244 102 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFR 181 (573)
Q Consensus 102 ~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~Glk 181 (573)
+||||++||||||||+++.+|+|.+||+|+||||++|+||||||||||+||+|++|+|+|||||||||||||||||||||
T Consensus 98 ~aGAiilGkTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPAa~cGvvG~K 177 (459)
T PRK00012 98 AAGAVILGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGSIRQPAAFCGVVGLK 177 (459)
T ss_pred HCCCEEEeeccchhhhcCCCCCCCCCCCcCCCCCCCCCCCCCcHHHHHHHHcCCCceEEeeCCCCccchhHHHcCceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc-----------------CCCCceEEEcccchhhcC
Q 008244 182 PSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-----------------QRSPRQIIIADDCFELLK 244 (573)
Q Consensus 182 PT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-----------------~~~~~rl~i~~~~~~~~~ 244 (573)
||+||||+.|++|+++++|++|||||+++|+..+++++.+.+..+ ..++.||++..+.+ ..
T Consensus 178 PT~G~vp~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~ 255 (459)
T PRK00012 178 PTYGRVSRYGLIAFASSLDQIGPFARTVEDAALLLNAIAGHDPKDSTSADVPVPDYTAALGKDIKGLKIGVPKEYF--GE 255 (459)
T ss_pred CCCCcccCCCCcCcccCCCcccCccCCHHHHHHHHHHHhCCCCCCcccccCCCCchhhhhcccccccEEEEEcccc--cc
Confidence 999999999999999999999999999999999999887543211 12344666654433 12
Q ss_pred CChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhH--HHHHHHHHHHH---------HHhhhHH
Q 008244 245 IPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGEL--KNVMRLIQRYE---------FKNNHNE 311 (573)
Q Consensus 245 ~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l--~~~~~~~~~~e---------~~~~~~~ 311 (573)
..++++.++++++++.|. |++|++ .++ |.+.+.......+ .+....+..+. ....+.+
T Consensus 256 ~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (459)
T PRK00012 256 GLDPEVKEAVEAAIKKLEDLGAEIVE-VSL--------PHTKYALPAYYIIAPAEASSNLARYDGVRYGYRAEDAKDLEE 326 (459)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CchHHHHHHHHHHHHHHHHHHHhhcccccccccccccccHHH
Confidence 347889999999999886 776642 222 2222111000000 00000010000 0011222
Q ss_pred HHHh-hCCCCCHHHHHHHHHhhcCC-----HHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCC-hHH
Q 008244 312 WIES-VKPALDPDISAEIGEMLEIS-----ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML-SED 384 (573)
Q Consensus 312 ~~~~-~~~~~~~~~~~~~~~g~~~s-----~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~-~~~ 384 (573)
++.. ....+++.++.++..+..++ ..+|.++++.|.+++++|.++|+++|+||+||+|.+||+++..... ...
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~ 406 (459)
T PRK00012 327 MYEKTRSEGFGEEVKRRIMLGTYVLSAGYYDAYYLKAQKVRTLIKQDFEKAFEKVDVILGPTAPTTAFKIGEKTDDPLAM 406 (459)
T ss_pred HHhhhhhhccCHHHHHHHHhCcchhccccchHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCcccccccCchHhh
Confidence 2222 23457888888887665433 3458889999999999999999999999999999999999754211 112
Q ss_pred HHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHH
Q 008244 385 YQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMY 438 (573)
Q Consensus 385 ~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le 438 (573)
+.. ..||.++|++|+|+||||+|+. +|+|+|||++|++++|..||++++.+|
T Consensus 407 ~~~--~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlvg~~~~D~~LL~~a~~~E 459 (459)
T PRK00012 407 YLS--DIFTVPANLAGLPAISVPAGFDDGGLPVGLQLIGKYFDEETLLNVAYAFE 459 (459)
T ss_pred hcc--ccccccccccCCCcEEEecCCCCCCCCEEEEEECCCCchHHHHHHHHHhC
Confidence 221 2379999999999999999988 799999999999999999999999875
No 21
>PRK07869 amidase; Provisional
Probab=100.00 E-value=3e-84 Score=682.04 Aligned_cols=415 Identities=18% Similarity=0.244 Sum_probs=318.0
Q ss_pred chhHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCCC-CCCCCCCCCceeeeecccccCC
Q 008244 6 ANLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLP-PKAPHPLTGLSFAVSDLFDIEG 73 (573)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~~-~~~~gpL~Gvp~~vKD~~~~~g 73 (573)
.++..+|+.+|+++++.++ + ++| +.||.+|||++...++++++|++ ....||||||||+|||+|+++|
T Consensus 10 ~~~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~e~a~~~A~~~d~~~gpL~GvPi~vKD~~~v~G 89 (468)
T PRK07869 10 DALGDLDAVGLAEAIRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARPGSQGGFFSGVPTFIKDNVDVAG 89 (468)
T ss_pred hhhhcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEEcCHHHHHHHHHhcCCCCCCcCCCeEEEecCcccCC
Confidence 4666778999999976654 2 233 77999999999988877666543 2456999999999999999999
Q ss_pred cccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhh
Q 008244 74 YVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAA 153 (573)
Q Consensus 74 ~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaa 153 (573)
++||+||+.+.+ .++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+
T Consensus 90 ~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~pGGSSgGsAaAVAa 167 (468)
T PRK07869 90 LPTMHGSDAWTP--RPAKADSDFARQFLATGLISLGKTQLPEFGFSASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAA 167 (468)
T ss_pred cccCcccHhhcC--CCCCCcHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHc
Confidence 999999999875 478899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccCCCCcccccccccCcccccCCCCccccCCCCCC-CCCCCcccccccCHHHHHHHHHHhcCCCccc------
Q 008244 154 DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPI-STSLDTVGWFARDPKILRHVGHVLLQLPFAA------ 226 (573)
Q Consensus 154 g~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~-~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~------ 226 (573)
|++|+|+|||||||||||||||||||||||+||||..|+.|. ..++|++|||+|+++|+..+++++.+.+...
T Consensus 168 G~~~~alGTDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~~d~~Gp~arsv~D~a~l~~v~~g~~~~~~~~~~~ 247 (468)
T PRK07869 168 GVVPIAHANDGGGSIRIPAACCGLVGLKPSRGRLPLDPELRRLPVNIVANGVLTRTVRDTAAFYREAERYYRNPKLPPIG 247 (468)
T ss_pred CCCceeeecCCCCccccchhhcCeeeecCCCCcccCCCCcccCccccceecCeeCcHHHHHHHHHHHhccCccCCCCchh
Confidence 999999999999999999999999999999999999998774 3468999999999999999999876532110
Q ss_pred -----CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHH
Q 008244 227 -----QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRL 299 (573)
Q Consensus 227 -----~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~ 299 (573)
..++.||++..+.+. ....++++.++++++++.|. |++|++ .+ .|...++... + ..+..
T Consensus 248 ~~~~~~~~~lrigv~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G~~v~~-~~--------~~~~~~~~~~---~-~~~~~ 313 (468)
T PRK07869 248 DVTGPGKQRLRIAVVTDSVT-GREADPEVREAVLATARLLEELGHRVEP-VD--------LPVPASFVDD---F-LLYWG 313 (468)
T ss_pred hhcccCCCCCEEEEECCccC-CCCCCHHHHHHHHHHHHHHHHCCCEEEE-eC--------CCchHHHHHH---H-HHHHH
Confidence 123456666544321 02358899999999999986 666532 11 1211111100 0 00000
Q ss_pred HHHHHHHhhhHHHHHhhCCCCCHHH-----HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCC
Q 008244 300 IQRYEFKNNHNEWIESVKPALDPDI-----SAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPK 374 (573)
Q Consensus 300 ~~~~e~~~~~~~~~~~~~~~~~~~~-----~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~ 374 (573)
+...+........ ....+.+.. ......+.. +..+|.++++.|+.+++.+.++|+++|+||+||+|.+||+
T Consensus 314 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~ap~ 389 (468)
T PRK07869 314 FLAFALVRGGRRT---FGPSFDRTRLDNLTLGLARHARR-NLHRLPLAIARLRRLRRVYARFFGTYDVVLTPTLAHTTPE 389 (468)
T ss_pred HHHHHHHhhhhhh---cccccCHHHhhHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCCCCC
Confidence 1111110000000 111223332 222222332 4556888899999999999999999999999999999999
Q ss_pred CCCCCCC--hHHH---HHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008244 375 LGGKEML--SEDY---QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (573)
Q Consensus 375 ~~~~~~~--~~~~---~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le~~ 440 (573)
++..... .... ...+..||.++|++|+|++|||+|+. +|||+|||++|++++|..||+++..+|+.
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~lL~~A~~le~~ 461 (468)
T PRK07869 390 IGYLDPTQDFDTVLDRLISYVAFTPLQNATGEPAISLPLGQSSDGLPVGMMFSADVGDEATLLELAYELEEA 461 (468)
T ss_pred CCccCccccchhhhHHHhcccccCccccccCCCceeeecCcCCCCCCeeEEEecCCCchHHHHHHHHHHHhc
Confidence 9753211 1111 11334589999999999999999997 89999999999999999999999999975
No 22
>PRK08186 allophanate hydrolase; Provisional
Probab=100.00 E-value=1e-83 Score=687.66 Aligned_cols=410 Identities=27% Similarity=0.332 Sum_probs=328.5
Q ss_pred HhhhhhhHHHHHH-----HH----hh-hhcCcccceeeccc-cCCCCCCCC----CCCCCCCCCceeeeecccccCCccc
Q 008244 12 LGLGLAGILLMTK-----KL----KK-NIKQDFGAFIEKLQ-LLPPPQPLP----PKAPHPLTGLSFAVSDLFDIEGYVT 76 (573)
Q Consensus 12 ~~~~l~~~~~~~~-----~~----~~-~~~~~~na~~~~~~-~~~~~~a~~----~~~~gpL~Gvp~~vKD~~~~~g~~t 76 (573)
++.+|+.+++.++ ++ +| +.++.+|+|++... +++++++++ ....+||+||||+|||||||+|++|
T Consensus 8 t~~~l~~~~~~g~~t~~evv~a~l~ri~~~~~~~a~i~~~~~~~a~~~A~~ld~~~~~~gPL~GVP~aVKDnidvaG~pT 87 (600)
T PRK08186 8 TLASLRAAYRAGTLTPRAVVAALYARIAAVDDPEVWIHLRPEADLLAQAAALEARDPAALPLYGVPFAVKDNIDVAGLPT 87 (600)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHhhhccccCCCCCCeEEeecceecCCccc
Confidence 6777777765543 32 33 23679999998875 344444322 1247899999999999999999999
Q ss_pred CCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCC
Q 008244 77 GFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLV 156 (573)
Q Consensus 77 t~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~ 156 (573)
|+||+.+. ++|.+||++|+||++||||++||||||||+++.++.|+.||+|+||||++|+||||||||||+||+|++
T Consensus 88 TaGs~~~~---~~p~~DA~vV~rLr~AGAIilGKTN~~Efa~g~~g~n~~yG~t~NP~~~~~~~GGSSsGSAaAVAaG~~ 164 (600)
T PRK08186 88 TAACPAFA---YTPERDATVVARLRAAGAIVIGKTNLDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSGSAVAVALGLV 164 (600)
T ss_pred CcCCHhHc---CCCCcChHHHHHHHHCCCEEEeeecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCc
Confidence 99999885 268999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc----------
Q 008244 157 DFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA---------- 226 (573)
Q Consensus 157 ~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~---------- 226 (573)
|+|+|||||||||+||+||||||||||+||||+.|++|.++++|++|||+|+++|+..+++++.+.+..+
T Consensus 165 ~~alGTDtgGSiRiPAa~cGlvGlKPT~G~vs~~Gv~p~~~slD~vGp~Arsv~D~~~~l~vl~g~d~~D~~s~~~p~~~ 244 (600)
T PRK08186 165 SFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTVDDADAVLAVMAGFDPADPYSRANPADA 244 (600)
T ss_pred ceEeeecCCCcchhhhHHhCceEEeCCCCcccCCCcccccccCCceecccCCHHHHHHHHHHhcCCCCCCcccccCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999887543221
Q ss_pred ---CCCCceEEEccc-chhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHH
Q 008244 227 ---QRSPRQIIIADD-CFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLI 300 (573)
Q Consensus 227 ---~~~~~rl~i~~~-~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~ 300 (573)
..++.||++..+ .+... .++++.++++++++.|. |++|++ ++ .|.+.+. ....+...
T Consensus 245 ~~~~~~~lrIgv~~~~~~~~~--~~~~v~~a~~~a~~~L~~~G~~v~e-i~--------~~~~~~~------~~~~~~~~ 307 (600)
T PRK08186 245 PAALPAGPRVGVPRAAQLEFF--GDAEAEAAFAAALARLEALGAELVE-ID--------FSPFLEA------ARLLYEGP 307 (600)
T ss_pred ccccCCCCEEEEEcchhcccc--CCHHHHHHHHHHHHHHHHcCCeEEE-ec--------chhHHHH------HHHHHHHH
Confidence 012346665532 11111 36789999999999986 666632 22 2222111 01111122
Q ss_pred HHHHHHhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCC
Q 008244 301 QRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM 380 (573)
Q Consensus 301 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~ 380 (573)
...+.+..+..++..+.+.+.+.++.++..+..++..+|.+++..|..+++.++++|+++|+||+||+|.+++ ++....
T Consensus 308 ~~ae~~~~~~~~~~~~~~~~~p~~~~~i~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~~D~Ll~Pt~p~~~~-~~~~~~ 386 (600)
T PRK08186 308 WVAERYAAVGEFLEAHPDAVDPVVRGIIAGAAAFSAADAFRALYRLAELRRAAEAVLAGIDALLVPTAPTHPT-IAEVAA 386 (600)
T ss_pred HHHHHHHHHHHHHhhChhhcCHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCC-chhhcC
Confidence 2234444556666666678999999999999999999999999999999999999999999999999999875 333222
Q ss_pred ChHHHHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008244 381 LSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442 (573)
Q Consensus 381 ~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le~~l~ 442 (573)
+....+..+..||.++|++|+|+|+||+|+. +|||+|||++|++++|..|++++..+|+.+.
T Consensus 387 ~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le~~~~ 449 (600)
T PRK08186 387 DPIGLNSRLGTYTNFVNLLDLCALAVPAGFRADGLPFGVTLIAPAFADQALADLAARLQAALA 449 (600)
T ss_pred CchhhhhhhhhccccccccCCCeEEEecccCCCCCCeeEEEEcCCCCHHHHHHHHHHHHhhcc
Confidence 2222223334589999999999999999987 8999999999999999999999999997643
No 23
>PRK08137 amidase; Provisional
Probab=100.00 E-value=4.1e-83 Score=677.63 Aligned_cols=405 Identities=23% Similarity=0.257 Sum_probs=318.5
Q ss_pred hHHHHhhhhhhHHHHHH-----H----Hhh--h---hcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeee
Q 008244 8 LWVLLGLGLAGILLMTK-----K----LKK--N---IKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVS 66 (573)
Q Consensus 8 ~~~~~~~~l~~~~~~~~-----~----~~~--~---~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vK 66 (573)
...+|+.+|+++++.++ + ++| + .||.+|||++...+ ++++|+ .+...|||+||||+||
T Consensus 3 ~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPi~vK 81 (497)
T PRK08137 3 ALEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPD-AEADAAALDAERKAGKVRGPLHGIPVLLK 81 (497)
T ss_pred hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceeEEEEeCHH-HHHHHHHHHHHHhcCCCCCCcCCceeeee
Confidence 34567888988866544 2 233 2 37899999998664 555442 3556799999999999
Q ss_pred cccccC-CcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhccc-----CCCCCCCCCCCCCCCCCCCC
Q 008244 67 DLFDIE-GYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI-----NGTNKHYDTPTNPAAPSQMP 140 (573)
Q Consensus 67 D~~~~~-g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~-----~~~~~~~G~t~NP~~~~~~~ 140 (573)
|+|+|+ |++||+||..+++ +++.+||++|+|||+||||++||||||||+++. +++|++||+|+||||++|+|
T Consensus 82 D~~~v~~G~~tt~Gs~~~~~--~~~~~DA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~~~~~~~ 159 (497)
T PRK08137 82 DNIDAADPMPTTAGSLALAG--NRPTRDAFLVARLRDAGAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRSP 159 (497)
T ss_pred cceeecCCCCcCcCcHhhcC--CCCCcCcHHHHHHHHCCCEEEeecChHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 999999 9999999999876 488999999999999999999999999999644 45899999999999999999
Q ss_pred CCCChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhc
Q 008244 141 GGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL 220 (573)
Q Consensus 141 GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~ 220 (573)
|||||||||+||+|++|+|+||||||||||||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.
T Consensus 160 GGSSgGsAaAVAaG~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~vl~ 239 (497)
T PRK08137 160 CGSSSGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLTAIA 239 (497)
T ss_pred CcCccHHHHHHHcCCCceeeecCCCCccccchhhcCeeeecCCCCceeCCCCCCcccccCcccCeeCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCccc--------------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccc
Q 008244 221 QLPFAA--------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDS 278 (573)
Q Consensus 221 ~~~~~~--------------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~ 278 (573)
+.+..+ ..++.||++..+.+ ..++++.++++++++.|. |++|++ +++
T Consensus 240 g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~----~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~------ 308 (497)
T PRK08137 240 GGDPADPATASAPAPAVDYVAALDADALRGARLGVARNYL----GYHPEVDAQFERALAELKAAGAVVID-VVD------ 308 (497)
T ss_pred CCCCCCcccccCCCCccchhhhccccccCCCEEEEEchhc----cCCHHHHHHHHHHHHHHHHCCCEEEe-ccC------
Confidence 542211 12345666654432 247889999999999986 776643 111
Q ss_pred cCCChhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHH-----------------------hhCCCCCHHHHHHHHHhhcCC
Q 008244 279 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIE-----------------------SVKPALDPDISAEIGEMLEIS 335 (573)
Q Consensus 279 ~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~g~~~s 335 (573)
|.+..+.. .+..+...|....+..++. .....+++.++.++..+..++
T Consensus 309 --~~~~~~~~-------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (497)
T PRK08137 309 --LDDGDWGE-------AEKVVLLHEFKAGLNAYLRSTAPHAPVRTLADLIAFNRAQHAREMPYFGQELFEQAQAAPGLD 379 (497)
T ss_pred --CchhhHHH-------HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhccchhhhcccCHHHHHHHHccCCCC
Confidence 22111110 1111111222222222111 112457788889888888899
Q ss_pred HHHHHHHHHHHHHH--HHHHHhhcC--CCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccC
Q 008244 336 ETVIENCKSIRNEM--RSAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY 411 (573)
Q Consensus 336 ~~~~~~a~~~r~~~--~~~~~~~~~--~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~ 411 (573)
..+|.++++.+..+ +++|.++|+ ++|+||+||++ ++|+++.... ..+. ..+|.++|++|+|++|||+|+.
T Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~-~ap~~~~~~~--~~~~---~~~t~~~nl~G~PaisvP~g~~ 453 (497)
T PRK08137 380 DPAYLDALADAKRLAGPEGIDAALKEHRLDALVAPTTG-PAWLIDLING--DSFG---GSSSTPAAVAGYPHLTVPMGQV 453 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCC-CCcccccccc--cccc---cccccccHhhCCCeEEEeCCCC
Confidence 99999998755554 489999997 78999999999 8888864211 1111 1368899999999999999999
Q ss_pred CCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008244 412 DKCPTSVSFIARHGGDRFLLDTVQNMYASL 441 (573)
Q Consensus 412 ~glPvGlq~~~~~~~d~~ll~~a~~le~~l 441 (573)
+|||+|||++|++++|..||+++.++|+..
T Consensus 454 ~GlPvGvQlig~~~~d~~LL~~a~~lE~~~ 483 (497)
T PRK08137 454 QGLPVGLSFIGAAWSEARLLELGYAYEQAT 483 (497)
T ss_pred CCcCeEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999753
No 24
>PRK07139 amidase; Provisional
Probab=100.00 E-value=5.1e-82 Score=656.71 Aligned_cols=394 Identities=23% Similarity=0.314 Sum_probs=307.4
Q ss_pred HHhhhhcCcccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCC
Q 008244 25 KLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGG 104 (573)
Q Consensus 25 ~~~~~~~~~~na~~~~~~~~~~~~a~~~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aG 104 (573)
.+++..+..+|++.+...+.. ...|||+||||+|||+|+++|++||+||+.+.+. +|.+||++|+|||+||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-------~~~gpL~GvPvavKD~~~v~G~~tt~Gs~~l~~~--~~~~dA~vV~rLr~AG 81 (439)
T PRK07139 11 ALEELKNDKNNAVSYVFDEKN-------NKDGPLANCVFTIKDNFATSEGPTHASSKSLENF--KPSYNATVVQKLINAG 81 (439)
T ss_pred HHHHhhccccCeEEEEecccC-------CCCCCcCCcEEEEEcceecCCCccCcChHHHccC--CCCCchHHHHHHHHCC
Confidence 345666778888888754432 3478999999999999999999999999998763 7889999999999999
Q ss_pred CeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCC
Q 008244 105 ATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSY 184 (573)
Q Consensus 105 ai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~ 184 (573)
||++||||||||+++.+|.|++||+|+||||++|+||||||||||+||++ +|+|+|||||||||+|||||||||||||+
T Consensus 82 AIilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGSAAaVAag-~~~alGtDtgGSIRiPAa~cGvvGlKPT~ 160 (439)
T PRK07139 82 AKPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAATFNKN-ISFAIGSDTGDSVRLPASFIGKVGFKPSY 160 (439)
T ss_pred CEEEEeechhhHhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHCC-CCEEEEcCCCcchhhhHHHcCeEEEeCCC
Confidence 99999999999999999999999999999999999999999999999997 79999999999999999999999999999
Q ss_pred CccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCcccC------------CCCceEEEcccchhhcCCChHHHHH
Q 008244 185 GAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ------------RSPRQIIIADDCFELLKIPADRVVQ 252 (573)
Q Consensus 185 G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~------------~~~~rl~i~~~~~~~~~~~~~~~~~ 252 (573)
||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+. .++.||++... + ...++++.+
T Consensus 161 G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~~~vl~g~d~~d~~~~~~~~~~~~~~~~lrig~~~~-~---~~~~~~v~~ 236 (439)
T PRK07139 161 GAISRYGLFAYASSLDTVAYFTHNVNDAIILSKVLFGKDENDLTSVDVKINNVKKTKPKKVAYLDC-F---KELEEYVAK 236 (439)
T ss_pred CCcCCCCcccCcccCCccccccCCHHHHHHHHHHHcCCCcCCccccccCcccccccCCCEEEEECc-c---ccCCHHHHH
Confidence 9999999999999999999999999999999999876543221 23456665421 1 224788999
Q ss_pred HHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhh--HHHHHHHHHHH---HH-----HhhhHHHHH-hhCCC
Q 008244 253 VVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGE--LKNVMRLIQRY---EF-----KNNHNEWIE-SVKPA 319 (573)
Q Consensus 253 ~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~--l~~~~~~~~~~---e~-----~~~~~~~~~-~~~~~ 319 (573)
+++++++.|. |++|++ +++... .+......... ..+....+..+ .+ ...+..++. .....
T Consensus 237 a~~~a~~~L~~~G~~v~~-~~~~~~------~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (439)
T PRK07139 237 KYKKLINILKSENIEVEK-IKIDEK------LLKAIKPVYKIISYSEASSNLANLNGIAFGNREKGSSWEEIMINTRSEG 309 (439)
T ss_pred HHHHHHHHHHHCCCEEEE-eCCChh------HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccHHHHHHhcchhc
Confidence 9999998886 666632 222110 01100000000 00000000000 00 001223322 23345
Q ss_pred CCHHHHHHHHHhhcCCH-----HHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhc
Q 008244 320 LDPDISAEIGEMLEISE-----TVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLS 394 (573)
Q Consensus 320 ~~~~~~~~~~~g~~~s~-----~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~ 394 (573)
+++.++.++..+..++. .+|.++++.|+++++.|.++|+++|+||+||+|.+||+++........+. .+ +|.
T Consensus 310 ~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~-~~--~t~ 386 (439)
T PRK07139 310 FGKMVQKRLILGSYFLEEENQEKYFLKAKKVRRVIKNYYESIHNKFDIVIYPAYADIAPDIDENENKSDNYM-DY--ILT 386 (439)
T ss_pred cCHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccchhhhh-hh--ccc
Confidence 88999999988876654 35899999999999999999999999999999999999875321122221 11 478
Q ss_pred cccccCCceeeecCccCCCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008244 395 IASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442 (573)
Q Consensus 395 ~~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~~a~~le~~l~ 442 (573)
++|++|+|+||||+|..+|||+|||+++++++|..||+++..+|+.++
T Consensus 387 ~~nl~G~PaisvP~g~~~glPiGlqivg~~~~D~~LL~~A~~lE~~~~ 434 (439)
T PRK07139 387 ISNLVGNPSLSIPLGKYNNLPFNLAIDSKIYDDEKLLSYSLYIEELIK 434 (439)
T ss_pred CcccCCCCeEEEeCCCCCCCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence 899999999999999558999999999999999999999999998664
No 25
>TIGR02713 allophanate_hyd allophanate hydrolase. Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.
Probab=100.00 E-value=2.4e-82 Score=669.96 Aligned_cols=368 Identities=27% Similarity=0.349 Sum_probs=303.2
Q ss_pred CCCCCCCceeeeecccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCC
Q 008244 54 APHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNP 133 (573)
Q Consensus 54 ~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP 133 (573)
..+||+||||+||||||++|++||+||+.+. ++|.+||++|+|||+||||++||||||||+++..+.|++||+|+||
T Consensus 28 ~~~PL~GvP~aVKD~idvaG~pTTaGs~~~~---~~p~~DA~vV~rLr~AGAIiiGKTN~~Efa~g~~g~n~~~G~t~NP 104 (561)
T TIGR02713 28 ERLPLYGVPFAVKDNIDVAGLPTTAACPAFA---YTPEEDATVVALLRAAGAIVVGKTNLDQFATGLVGTRSPYGAVRNA 104 (561)
T ss_pred CCCCccCCeEEEEcccccCCCccCcCCHhHc---CCCCcCHHHHHHHHHCCCEEEEEeCchHhhcCCCCCCCCCCCCCCC
Confidence 3589999999999999999999999999885 3788999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHH
Q 008244 134 AAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILR 213 (573)
Q Consensus 134 ~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~ 213 (573)
||++|+|||||||||++||+|++++|+|||||||||||||||||||||||+||||..|++|+++++|++|||+|+++|+.
T Consensus 105 ~d~~~~~GGSSsGSAaAVAaG~v~~alGTDtgGSiRiPAa~cGlvGlKPT~G~vs~~Gv~p~~~slD~vG~~Arsv~D~~ 184 (561)
T TIGR02713 105 FDPAYISGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLVSTTGVVPACRSLDCVSIFALTVADAE 184 (561)
T ss_pred CCCCCCCCCCcHHHHHHHHcCCCceEEeecCCCcchhhhHHhCceeEecCCCCccCCCccccccCCCeeechhCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcccC-------------CCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccc
Q 008244 214 HVGHVLLQLPFAAQ-------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDS 278 (573)
Q Consensus 214 ~v~~~~~~~~~~~~-------------~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~ 278 (573)
.+++++.+.+..+. .++.||+|..+..... ..++++.++++++++.|. |++|++ ++
T Consensus 185 ~~l~v~~g~d~~d~~s~~~p~~~~~~~~~~lrigv~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-v~------- 255 (561)
T TIGR02713 185 QVLRIAAAPDARDPYSRPLPAAALRRLPPPPRVGVPRAAQLEF-FGDSQAEAAFAAAVERLEALGVEVVE-ID------- 255 (561)
T ss_pred HHHHhhcCCCCcCccccCCCchhhcccCCCCEEEEECchhcCC-CCCHHHHHHHHHHHHHHHHCCCEEEE-ec-------
Confidence 99998875432211 1334666654111111 136788999999999986 666532 22
Q ss_pred cCCChhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcC
Q 008244 279 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLK 358 (573)
Q Consensus 279 ~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~ 358 (573)
.+.+.+.. ...+...+..+.+..+..++..+.+.+.|.++.++..+..++..+|.++++.|+.+++.++++|+
T Consensus 256 -~~~~~~~~------~~l~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~l~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~ 328 (561)
T TIGR02713 256 -FAPFLETA------ALLYEGPWVAERYAAVGEFVEAQPDALDPVVRGIITSATRFSAADAFAAQYRLAALRRKAEALLA 328 (561)
T ss_pred -chhHHHHH------HHHHHHHHHHHHHHHHHHHHhhChhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22221110 00111112223344455666666778999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHH
Q 008244 359 DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNM 437 (573)
Q Consensus 359 ~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~l 437 (573)
++|+||+||+|.+++..+ ...+.......+..||.++|++|+|+||||+|+. +|||+|||+++++++|..|++++..+
T Consensus 329 ~~DvLl~Pt~p~~~~~~~-~~~~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~l 407 (561)
T TIGR02713 329 GVDVLLVPTAPTHPTIEE-VLADPVGLNSRLGTYTNFVNLLDLCAVAVPAGFRSDGLPFGVTLIGPAFHDAALASLGRRL 407 (561)
T ss_pred cCCEEEeCCCCCCCCchh-ccCCchhhhhhhhcccccccccCCceEEeecccCCCCCCEEEEEEcCCCChHHHHHHHHHH
Confidence 999999999999875433 2222222233334589999999999999999987 89999999999999999999999999
Q ss_pred HHHH
Q 008244 438 YASL 441 (573)
Q Consensus 438 e~~l 441 (573)
|+..
T Consensus 408 e~~~ 411 (561)
T TIGR02713 408 QAAS 411 (561)
T ss_pred Hhcc
Confidence 9763
No 26
>PRK06828 amidase; Provisional
Probab=100.00 E-value=8.1e-79 Score=637.16 Aligned_cols=387 Identities=19% Similarity=0.212 Sum_probs=302.1
Q ss_pred HhhhhhhHHHHHH-----H----Hhh--hhc---CcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccc
Q 008244 12 LGLGLAGILLMTK-----K----LKK--NIK---QDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFD 70 (573)
Q Consensus 12 ~~~~l~~~~~~~~-----~----~~~--~~~---~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~~~ 70 (573)
++.+|+++++.++ + ++| +.| |.+|||++...+ ++++|+ .++..|||+||||+|||+|+
T Consensus 14 ~~~~l~~~l~~g~~t~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~ 92 (491)
T PRK06828 14 TIHDIQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPD-AIFIAEALDHERKIKGVRGPLHGIPVLLKDNIE 92 (491)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCeeEEEEecCHH-HHHHHHHHHHHHhcCCCCCCccCceeeeeeeEE
Confidence 4677777755444 2 233 556 589999998765 444432 35567999999999999999
Q ss_pred cCC-cccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcc-----cCCCCCCCCCCCCCCCC---CCCCC
Q 008244 71 IEG-YVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYS-----INGTNKHYDTPTNPAAP---SQMPG 141 (573)
Q Consensus 71 ~~g-~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~-----~~~~~~~~G~t~NP~~~---~~~~G 141 (573)
++| ++||+||..+.+ +++.+||++|++||+||||++||||||||+++ .++.|++||+|+||||+ +|+||
T Consensus 93 v~gg~~tt~Gs~~~~~--~~~~~da~vV~~Lr~aGaii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~d~~~~~r~pG 170 (491)
T PRK06828 93 TNDSMHTSAGTIALEQ--HISSEDAFLVTKLREAGAVILGKANMTELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVG 170 (491)
T ss_pred ecCCCcCCcCcHHHcC--CCCCCChHHHHHHHHCCCEEEeecChHHHhhccCCCCCCCcCCCCCCcCCCCCCccCCcCCC
Confidence 996 999999999876 48899999999999999999999999999975 58999999999999999 68999
Q ss_pred CCChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcC
Q 008244 142 GSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQ 221 (573)
Q Consensus 142 GSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~ 221 (573)
|||||||++||+|++|+|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||+|+++|+..+++++.+
T Consensus 171 GSSgGsAaaVAag~~~~aiGtDtgGSiRiPAa~cGvvGlKPT~G~vs~~G~~p~~~s~d~~Gp~arsv~D~a~~~~~l~g 250 (491)
T PRK06828 171 GSSTGSAIAVAANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAILLGSLTG 250 (491)
T ss_pred cCchHHHHHHHcCCCceEeecCCCCccccchhhcCceeecCCCCCccCCCCCCCccCCCeeccccCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred CCccc---------------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccc
Q 008244 222 LPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDS 278 (573)
Q Consensus 222 ~~~~~---------------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~ 278 (573)
.+..+ ..++.||++..+.+......++++.++++++++.|. |++|++..++.
T Consensus 251 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~~p----- 325 (491)
T PRK06828 251 VDEKDVVTHKSEGIAEHDYTKYLDANGLNGAKIGVYNNAPKEYYESGEYDEKLFKETIEVLRSEGATVVEDIDIP----- 325 (491)
T ss_pred CCccCccccccCcCCCCchhhhhccccCCCCEEEEEcCccccccCCCHHHHHHHHHHHHHHHhcCCEEEecccCc-----
Confidence 33211 134556666432111111247889999999999986 77765423222
Q ss_pred cCCChhhhhhhhhhHHHHHHHHHHHHHHhhhHHHH----------------------HhhCCCCCHHHHH-HHHHhhcCC
Q 008244 279 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWI----------------------ESVKPALDPDISA-EIGEMLEIS 335 (573)
Q Consensus 279 ~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~----------------------~~~~~~~~~~~~~-~~~~g~~~s 335 (573)
.+...... .+..+|+...+..++ ......+++.+.. ++..+..++
T Consensus 326 ---~~~~~~~~---------~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 393 (491)
T PRK06828 326 ---SFHREWSW---------GVLLYELKHSLDNYLSKLPSTIPVHSISELMEFNENIAERALKYGQTKLERRKDFPNTLR 393 (491)
T ss_pred ---cchhHHHH---------HHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhhhchhhhhccCHHHHHHHHhcCCCCC
Confidence 11110000 000111111111111 1222356775444 466777889
Q ss_pred HHHHHHHHHHHHHHH--HHHHhhcCC--CCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccC
Q 008244 336 ETVIENCKSIRNEMR--SAISSLLKD--DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY 411 (573)
Q Consensus 336 ~~~~~~a~~~r~~~~--~~~~~~~~~--~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~ 411 (573)
..+|.++++.|..+. +.++++|++ +|+||+||++.. .+.|++|+|+||||+|++
T Consensus 394 ~~~y~~a~~~r~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~----------------------~~~~~~GlPaisvP~G~~ 451 (491)
T PRK06828 394 NPEYLNARLEDIYFSQEQGIDFALEKYNLDAILFPSYIGS----------------------TICAKAGYPSIAIPAGYM 451 (491)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhcCCCEEEeCCCCcc----------------------cchhhcCCCeEEeecCCC
Confidence 999999999888754 799999984 899999999753 234699999999999997
Q ss_pred -CCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008244 412 -DKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (573)
Q Consensus 412 -~glPvGlq~~~~~~~d~~ll~~a~~le~~ 440 (573)
+|||+||||+|++++|..||+++.++|+.
T Consensus 452 ~~GlPvGlQlig~~~~D~~LL~~A~a~E~~ 481 (491)
T PRK06828 452 EGGRPFGITLASTAFSEGTLIKLAYAFEQA 481 (491)
T ss_pred CCCcCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 89999999999999999999999999975
No 27
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence. They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....
Probab=100.00 E-value=1.2e-80 Score=658.93 Aligned_cols=384 Identities=30% Similarity=0.424 Sum_probs=293.3
Q ss_pred hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccCCcccCCCchhhhhcCCCCCCChHHHHHHH
Q 008244 29 NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLV 101 (573)
Q Consensus 29 ~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~ 101 (573)
+.||.+|||++...+.|+++|+ .+...+|||||||+|||+|+++|++||+||..+.+. ++++||++|++||
T Consensus 12 ~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~pL~Gip~~vKD~~~~~g~~tt~G~~~~~~~--~~~~~a~~v~~L~ 89 (441)
T PF01425_consen 12 AYNPELNAFVEVDFDEALAQARELDARRARGKPRGPLHGIPISVKDNIDVAGLPTTAGSPALADN--PPTEDAPVVQRLR 89 (441)
T ss_dssp HHHHHH--EEEEEHHHHHHHHHHHHHHHHTTSSSSTTTT-EEEEETTBSBTTSBB-TTSGGGTTB--BBSSS-HHHHHHH
T ss_pred HhCcccCEEEEECcHHHHHHHHHHHHHHhhcCCCCCCCCCceeccccccccccccccccccccCc--Ccccccchhhhee
Confidence 7789999999998888777653 467889999999999999999999999999999864 8999999999999
Q ss_pred hCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCccccc
Q 008244 102 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFR 181 (573)
Q Consensus 102 ~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~Glk 181 (573)
+||||++||||||||+++.++.|+.||+|+||||+.++||||||||||+||+|++|+|+|||||||||+||+||||||||
T Consensus 90 ~aGai~~gkt~~~e~~~~~~~~~~~~g~~~Np~~~~~~~GGSS~Gsaaavaag~~~~a~GtDtgGSiR~PAa~~Gv~Glk 169 (441)
T PF01425_consen 90 AAGAIIIGKTNMPEFAMGPTTSNPLYGRTRNPWNPSRTPGGSSGGSAAAVAAGFVPLAIGTDTGGSIRIPAAFCGVVGLK 169 (441)
T ss_dssp HTT-EEEEEE--SGGGCSSSSTTTTTEE-EBTTBTTBE--SSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEE
T ss_pred cccccceeeecccceeccccccccccccccCcccccccccccccccccccceecccccccccccccccCchhccccceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc-------------------CCCCceEEEcccchhh
Q 008244 182 PSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-------------------QRSPRQIIIADDCFEL 242 (573)
Q Consensus 182 PT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-------------------~~~~~rl~i~~~~~~~ 242 (573)
||+|+||..|++|+++++|++||||||++|+..+++++.+.+..+ ..++.||++..+.+.
T Consensus 170 PT~G~vs~~G~~~~~~~~d~~GpmaRsv~Dl~~~l~vl~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~lrIGv~~~~~~- 248 (441)
T PF01425_consen 170 PTRGRVSRDGVFPLSPSFDTVGPMARSVEDLALLLDVLAGPDPWDPDSLPVPPPPPDFDAPLPKSLKGLRIGVPRDDGQ- 248 (441)
T ss_dssp -STTSS--TTB-CSSTTT-EEEEEESSHHHHHHHHHHHBSCBTTBTTSCSTT--SS-CSTTTTSTTTT-EEEEEGGGG--
T ss_pred cccccccccccccccccccccccccCcHHHHHHHHHHhcCCCccCCCccccccccccccccccccccCccccccccccc-
Confidence 999999999999999999999999999999999999987654221 123456776655431
Q ss_pred cCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHHHHHHHHhh------hHHHH-
Q 008244 243 LKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNN------HNEWI- 313 (573)
Q Consensus 243 ~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~------~~~~~- 313 (573)
....++++.++++++++.|. |++|++ . ..|.+.+... .+..+...+.... +..++
T Consensus 249 ~~~~~~~v~~a~~~a~~~L~~~G~~vv~-~--------~~p~~~~~~~-------~~~~~~~~e~~~~~~~~~~~~~~~~ 312 (441)
T PF01425_consen 249 WVPVDPEVRRAFEEAAEALEAAGAEVVE-V--------DLPDLDEAMD-------AYYRIFVSEGAANLARYKDFARLLA 312 (441)
T ss_dssp SSTSSHHHHHHHHHHHHHHHHTT-EEEE-E----------TTGGHHHH-------HHHHHHHHHHHHHHTTTCSHHHHHH
T ss_pred cccccHHHHHHHHHHHHhhccccccccc-c--------cCchHHHHHH-------HHhhhHHHHHHHHHhhhhHHHHhhh
Confidence 23458899999999999986 666543 1 2333332211 1111111122211 11222
Q ss_pred HhhCCCCCHHHHHHHHHhhcCCHH-----HHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCC---hHHH
Q 008244 314 ESVKPALDPDISAEIGEMLEISET-----VIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML---SEDY 385 (573)
Q Consensus 314 ~~~~~~~~~~~~~~~~~g~~~s~~-----~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~---~~~~ 385 (573)
......+.+.+..++..+...... .|.++++.|..+++++.++|+++|+||+||++.++|+++..... ....
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~ 392 (441)
T PF01425_consen 313 KWRDPPLSPIVRSRLEQGAAISSAEDDSEYYLQAQRRRARLRRRFDELFEEYDALLTPTTPVPAPPIGEPSPLGPDYTAL 392 (441)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHCTTTTTTHHHHHHHHHHHHHHHHHHHHHHSSEEEEESSSSS-BBTTTTCCCTSCHHHH
T ss_pred cccccccccchhhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHhhcceecccCCCcCCCccccccccccchhhh
Confidence 122345667777777766533222 38999999999999999999999999999999999999976431 1111
Q ss_pred --HHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHH
Q 008244 386 --QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLL 431 (573)
Q Consensus 386 --~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll 431 (573)
...+..+|.++|++|+|+++||+|+. +|||+|||++|++++|+.||
T Consensus 393 ~~~~~~~~~t~~~n~~g~PaisvP~g~~~~GlPvGvqlvg~~~~D~~LL 441 (441)
T PF01425_consen 393 WNLLDFTAYTSPANLAGLPAISVPVGFDPDGLPVGVQLVGRPGSDEKLL 441 (441)
T ss_dssp HHHHTTTTTTHHHHHHTHHEEEEEEEEETTTEEEEEEEEESTTBHHHHH
T ss_pred hhhhhhhccccccccccCcceeeecCCCCCCcCEeEEEECCCCCccCcC
Confidence 22445578999999999999999997 89999999999999999986
No 28
>PRK11910 amidase; Provisional
Probab=100.00 E-value=6.7e-77 Score=622.05 Aligned_cols=391 Identities=20% Similarity=0.279 Sum_probs=295.3
Q ss_pred chhHHHHhhhhhhHHHHHH-----H----Hhh--hhcC---cccceeeccccCCCCCCCC-----CCCCCCCCCceeeee
Q 008244 6 ANLWVLLGLGLAGILLMTK-----K----LKK--NIKQ---DFGAFIEKLQLLPPPQPLP-----PKAPHPLTGLSFAVS 66 (573)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~-----~----~~~--~~~~---~~na~~~~~~~~~~~~a~~-----~~~~gpL~Gvp~~vK 66 (573)
+.+...|+.+|+.+++.++ + ++| +.|+ .+|||++...+ ++++|++ ...+||||||||+||
T Consensus 160 ~~i~~~ti~~L~~~l~~g~lT~~elv~a~L~RI~~~n~~g~~LnA~i~~~~~-Al~~A~~lD~~~~~~~gPL~GIPv~VK 238 (615)
T PRK11910 160 PLIIGADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPT-IIAEAEQLDKENTTNKSALYGMPVLLK 238 (615)
T ss_pred ccchhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceeEEEEcCHH-HHHHHHHHHHHhccCCCCcCCCEEEEE
Confidence 3344556777777755443 2 343 5666 79999998765 4444321 123589999999999
Q ss_pred cccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcc-----cCCCCCCCCCCCCCCCCCCCCC
Q 008244 67 DLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYS-----INGTNKHYDTPTNPAAPSQMPG 141 (573)
Q Consensus 67 D~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~-----~~~~~~~~G~t~NP~~~~~~~G 141 (573)
|||+++|++||+||.++.+ .++.+||++|+|||+||||++||||||||+++ ..++|.+||+|+||||++|+||
T Consensus 239 Dni~t~G~pTTaGS~al~~--~~p~~DA~vV~rLr~AGAIIlGKTNm~EfA~~~~~~~~~g~s~~~G~t~NP~~~~r~pG 316 (615)
T PRK11910 239 DNIGTKELPTSAGTVALKD--WVIGKDATIVENLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDPS 316 (615)
T ss_pred cCcccCCCccCcccHhhcC--CCCCCCHHHHHHHHHCCCEEEEEeCcchhhhCCCCCCCCCCCCCCCCcCCCCCCCCCCC
Confidence 9999999999999999986 47899999999999999999999999999977 3578899999999999999999
Q ss_pred CCChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcC
Q 008244 142 GSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQ 221 (573)
Q Consensus 142 GSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~ 221 (573)
||||||||+||+|++++|+|||||||||+||+||||||||||+|++|+.|++|+++++|++|||+|++.|+..+++++.+
T Consensus 317 GSSsGSAAAVAaG~a~~AiGTDTgGSIR~PAa~cGvVGlKPT~G~vSr~GviPls~slDtvGPmaRsV~D~a~ll~vi~g 396 (615)
T PRK11910 317 GSSSGSATAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAYLTTNALTN 396 (615)
T ss_pred CCCchHHHHHhcCCceEEeecCCCCccccchHHcCceeEecCCCCCCCCCCcCCcCCCCeeccccCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCccc-----CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHH
Q 008244 222 LPFAA-----QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELK 294 (573)
Q Consensus 222 ~~~~~-----~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~ 294 (573)
.+..+ ..++.||++..+. .++++..+++++++.|. |++|++... .|.+... .
T Consensus 397 ~~~~~~l~~~~lkglRIGv~~~~------~~~~v~~a~~~a~~~L~~~Ga~Vve~~~--------~p~~~~~-------~ 455 (615)
T PRK11910 397 TTSNPPLSTDALKGKRIGLLADG------ESNEETAVIKKIKLDLQKAGATIIEGIA--------VGEFEQK-------D 455 (615)
T ss_pred CCCcCccCcccCCCCEEEEECCC------CCHHHHHHHHHHHHHHHHCCCEEEeCCC--------CccHHHH-------H
Confidence 44321 2445677765431 24567788888888775 777653222 1222211 1
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhC--------------------CCCCHHHHHHHHHhh-cCCHHH-HHHHHHHHHHHHHH
Q 008244 295 NVMRLIQRYEFKNNHNEWIESVK--------------------PALDPDISAEIGEML-EISETV-IENCKSIRNEMRSA 352 (573)
Q Consensus 295 ~~~~~~~~~e~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~-~~s~~~-~~~a~~~r~~~~~~ 352 (573)
..+..+..+|+...+..++.... ..+++. .++..+. .++..+ +..+++.|..+++.
T Consensus 456 ~~~~~l~~~E~~~~l~~yl~~~~~~v~sL~dl~~fn~~~~~~~~~~gq~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (615)
T PRK11910 456 TDYASLLNADFKHDLNQFLQVNHSPMSTLESIIQFNQTNPTRNMKYGQS--ELVKSQQSTITKQQADNLASNLIQSSQNE 533 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhcCcccccCcCHH--HHHhhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 12223333455555555442211 122222 1122222 134443 23366777888899
Q ss_pred HHhhcC--CCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccC--CCCCceeEEEeccCCcH
Q 008244 353 ISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY--DKCPTSVSFIARHGGDR 428 (573)
Q Consensus 353 ~~~~~~--~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~--~glPvGlq~~~~~~~d~ 428 (573)
++++|+ ++|+||+|+.... .+...+++|+|+||||+|++ +|||+||||+|++++|.
T Consensus 534 l~~~~~~~~lDalv~P~~~~~--------------------~~~~~~~aG~PaItVP~G~~~~~GlPvGlqliG~~~sE~ 593 (615)
T PRK11910 534 LDSVLQKDKLDAVVTIGMGGS--------------------VMFLAPIAGNPELTIPAGYDEESNQPISLTFITARNSDK 593 (615)
T ss_pred HHHHHHHCCCcEEEeCCCCCc--------------------chhhhhhcCCCeEEecccCCCCCCcCeEEEEECCCCCHH
Confidence 999996 7999999973210 01224499999999999987 49999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 008244 429 FLLDTVQNMYASLQ 442 (573)
Q Consensus 429 ~ll~~a~~le~~l~ 442 (573)
.|++++++||++.+
T Consensus 594 ~LL~~A~a~Eq~t~ 607 (615)
T PRK11910 594 ILLNMGYAYEQQSK 607 (615)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998654
No 29
>PRK06707 amidase; Provisional
Probab=100.00 E-value=3.6e-75 Score=612.17 Aligned_cols=383 Identities=23% Similarity=0.261 Sum_probs=292.2
Q ss_pred HHhhhhhhHHHHHH-----H----Hhh--hhc---CcccceeeccccCCCCCCC------CCCCCCCCCCceeeeecccc
Q 008244 11 LLGLGLAGILLMTK-----K----LKK--NIK---QDFGAFIEKLQLLPPPQPL------PPKAPHPLTGLSFAVSDLFD 70 (573)
Q Consensus 11 ~~~~~l~~~~~~~~-----~----~~~--~~~---~~~na~~~~~~~~~~~~a~------~~~~~gpL~Gvp~~vKD~~~ 70 (573)
.+..+|+.+++.++ + ++| +.| +.+|||++...+ ++++|+ +....+|||||||+|||||+
T Consensus 71 ~~i~~l~~~~~~g~lt~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~~~pL~GiPi~vKD~i~ 149 (536)
T PRK06707 71 ATVDELQKMIDDGKLSYEELTSIYLFRIQEHDQNGITLNSVTEINPN-AMEEARKLDQERSRNKKSNLYGIPVVVKDNVQ 149 (536)
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceEEEEECCHH-HHHHHHHHHHHHhcCCCCCcCCCeEEEecccc
Confidence 45667776655443 2 244 456 579999998664 444432 11235899999999999999
Q ss_pred c-CCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcc-----cCCCCCCCCCCCCCCCC-CCCCCCC
Q 008244 71 I-EGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYS-----INGTNKHYDTPTNPAAP-SQMPGGS 143 (573)
Q Consensus 71 ~-~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~-----~~~~~~~~G~t~NP~~~-~~~~GGS 143 (573)
+ +|++||+||..+.+. ++.+||++|+|||+||||++||||||||++. .+++|++||+|+||||+ .++||||
T Consensus 150 ~~~g~~TtaGs~~l~~~--~~~~DA~vV~rLr~AGAiilGKtnm~E~a~~~~~~~~~g~s~~~G~t~NP~~~~~~~pGGS 227 (536)
T PRK06707 150 TAKVMPTSAGTYVLKDW--IADQDATIVKQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDTSGS 227 (536)
T ss_pred cCCCCccCcccHhhccC--CCCCChHHHHHHHHCCCEEEEecCchhhhccCCCCCCCCCCCCCCCCCCCCCcccCCCCCC
Confidence 9 999999999998764 7889999999999999999999999999963 57889999999999999 6899999
Q ss_pred ChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCC
Q 008244 144 SSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLP 223 (573)
Q Consensus 144 SgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~ 223 (573)
|||||++||+|++++|+|||||||||+||++|||||||||+|+||+.|++|+++++|++|||+|++.|+..+++++.+.+
T Consensus 228 SsGSAaAVAag~~~~aiGtDtgGSIr~PAs~~GvvGlKPT~G~vs~~Gv~p~s~slDt~Gp~artV~D~a~~l~~~~g~d 307 (536)
T PRK06707 228 SSGSATVVAADFAPLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMARTVKDAATLFNAMIGYD 307 (536)
T ss_pred CchHHHHHhCCCCceEEecCCCCcccccHHHcCeEEEeCCCCcccCCCCcCcccccCeecCeeCCHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887543
Q ss_pred ccc---------------------CCCCceEEEcccchhhcCCChHHHHHH-HHHHHHHHc--CCccceeccCCcccccc
Q 008244 224 FAA---------------------QRSPRQIIIADDCFELLKIPADRVVQV-VIKSTEKLF--GRQVLKHENLGEYFDSK 279 (573)
Q Consensus 224 ~~~---------------------~~~~~rl~i~~~~~~~~~~~~~~~~~~-~~~a~~~l~--G~~vv~~~~lg~~v~~~ 279 (573)
..+ ..+++||++..+.. .++++.++ ++++++.|. |+++++.+++
T Consensus 308 ~~d~~~~~~~~~~~~~~~~~l~~~~l~~~rigv~~~~~-----~~~~~~~a~~~~a~~~L~~~Ga~iv~~~~l------- 375 (536)
T PRK06707 308 EKDVMTEKVKDKERIDYTKDLSIDGLKGKKIGLLFSVD-----QQDENRKAVAEKIRKDLQDAGAILTDYIQL------- 375 (536)
T ss_pred CCccccccccccCCcchhhhccccCCCCCEEEEECCcC-----CCHHHHHHHHHHHHHHHHHcCCEEEeccCC-------
Confidence 211 13456777654321 24566666 477777765 7776542222
Q ss_pred CCChhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHhhCC----------CC-CHHHHHHHHHhhcCC---------H-HH
Q 008244 280 VPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKP----------AL-DPDISAEIGEMLEIS---------E-TV 338 (573)
Q Consensus 280 ~p~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~----------~~-~~~~~~~~~~g~~~s---------~-~~ 338 (573)
|... . . ...+..+|+..++..|+..... .+ .+.++.++..+..+. . ..
T Consensus 376 -~~~~-~--------~-~~~~~~~e~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 444 (536)
T PRK06707 376 -NNGG-V--------D-NLQTLEYEFKHNVNDYFSQQKNVPVKSLEEIIAFNKKDSKRRIKYGQTLIEASEKSAITKDEF 444 (536)
T ss_pred -chhh-H--------H-HHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHhcCHHHHHHHHccchhhhhhhhcccccHHH
Confidence 1100 0 0 0111223444444443321100 02 255666665554321 2 23
Q ss_pred HHHHHHHHHHHHHHHHhhcC--CCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccC-CCCC
Q 008244 339 IENCKSIRNEMRSAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCP 415 (573)
Q Consensus 339 ~~~a~~~r~~~~~~~~~~~~--~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glP 415 (573)
+..+++.|..+++.++++|+ ++|+||+|.. . .|.++|++|+|+||||+|++ +|+|
T Consensus 445 ~~~~~~~r~~~~~~~~~~~~~~~~Dall~p~~---------~-------------~t~~an~aG~PaitvP~G~~~~GlP 502 (536)
T PRK06707 445 EKVVQTSQENAKKELDRYLVEKGLDALVMINN---------E-------------EVLLSAVAGYPELAVPAGYDNNGEP 502 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCEEEecCC---------C-------------cchhhHhcCCCeEEEecccCCCCCC
Confidence 44567778889999999998 8999999831 0 26678999999999999987 8999
Q ss_pred ceeEEEeccCCcHHHHHHHHHHHHHH
Q 008244 416 TSVSFIARHGGDRFLLDTVQNMYASL 441 (573)
Q Consensus 416 vGlq~~~~~~~d~~ll~~a~~le~~l 441 (573)
+||||+|++++|..|+++++.+|+..
T Consensus 503 ~Glqlig~~~~e~~LL~~A~~~E~~~ 528 (536)
T PRK06707 503 VGAVFVGKQFGEKELFNIGYAYEQQS 528 (536)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhC
Confidence 99999999999999999999999754
No 30
>PRK06565 amidase; Validated
Probab=100.00 E-value=5.9e-73 Score=588.27 Aligned_cols=418 Identities=20% Similarity=0.240 Sum_probs=296.5
Q ss_pred HHhhhhhhHHHHH-----HH----Hhh--hhc-----CcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeec
Q 008244 11 LLGLGLAGILLMT-----KK----LKK--NIK-----QDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSD 67 (573)
Q Consensus 11 ~~~~~l~~~~~~~-----~~----~~~--~~~-----~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD 67 (573)
.++.+|.+++..+ |+ ++| +.| +.+|||+....+ ++++|+ .++.+||||||||+|||
T Consensus 7 ~si~~L~~~l~~g~~t~~elv~a~l~ri~~~~~~~~~~~lna~~~~~~~-Al~~A~~~D~~~~~g~~~gpL~GIPi~vKD 85 (566)
T PRK06565 7 VSIAELRAALESGRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPD-ALKEAEASDARRARGETLGPLDGIPYTAKD 85 (566)
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccCcceEEEEecCHH-HHHHHHHHHHHHhcCCCCCCCCCCEEEEec
Confidence 3556666665443 33 233 556 689999986554 544432 34567999999999999
Q ss_pred ccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCC----CCCCC
Q 008244 68 LFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQ----MPGGS 143 (573)
Q Consensus 68 ~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~----~~GGS 143 (573)
+|+++|++||+||..+.+ .++.+||++|++||+||||++||||||||+++.++ |.+||+|+||||++| +||||
T Consensus 86 ~~~v~G~~TT~Gs~~l~~--~~~~~DA~vV~rLr~AGAIilGKTnm~E~a~g~~~-~~~~G~t~NP~n~~~~~~~~pGGS 162 (566)
T PRK06565 86 SYLVKGLTAASGSPAFKD--LVAQRDAFTIERLRAAGAICLGKTNMPPMANGGMQ-RGVYGRAESPYNAAYLTAPFASGS 162 (566)
T ss_pred ccccCCCCcccccHhhcC--CCCCCCHHHHHHHHHCCCEEEEecccchhhhCCCC-CCCCCCcCCCcCcccCcCCCCCCC
Confidence 999999999999999976 48899999999999999999999999999999876 679999999999999 59999
Q ss_pred ChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCC
Q 008244 144 SSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLP 223 (573)
Q Consensus 144 SgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~ 223 (573)
|||||++||+|++++|+|||||||||+||++|||||||||+|+||+.|++|+++++|++|||+|+++|+..+++++.+.+
T Consensus 163 SgGsAaAVAag~~~~alGtDtgGSIR~PAa~~GivG~KPT~G~vs~~Gv~p~~~s~D~vGp~aRsV~D~a~~l~vl~g~D 242 (566)
T PRK06565 163 SNGAGTATAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTMADLLEVLDVIVADD 242 (566)
T ss_pred CccHHHHHhCCCCcceeecCCCCchhhhHHHcCeeEEeCCCCccCCCCcccccCCCCeecceeCCHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887532
Q ss_pred cc--------------------------------cCCCCceEEEcccchhhcC------------------CChHHHHHH
Q 008244 224 FA--------------------------------AQRSPRQIIIADDCFELLK------------------IPADRVVQV 253 (573)
Q Consensus 224 ~~--------------------------------~~~~~~rl~i~~~~~~~~~------------------~~~~~~~~~ 253 (573)
.. ...+++||++...++.... ..++++.+.
T Consensus 243 ~~d~~~~~~~~~~~~~p~~~~~~~~~y~~~~~~~~~l~g~RIGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 322 (566)
T PRK06565 243 PDTRGDLWRLQPWVPIPKASEVRPASYLALAAGADALKGKRFGVPRMYINADPDAGTSENPGIGGPTGQRIHTRPSVIDL 322 (566)
T ss_pred cccccchhhccccccCccccccCccchhhhhccccCCCCCEEEEEChhhccccccccccccccccccccccCCCHHHHHH
Confidence 11 1134567777655432110 125689999
Q ss_pred HHHHHHHHc--CCccceeccCCcc--ccccCC---Ch-------hhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHhhC--
Q 008244 254 VIKSTEKLF--GRQVLKHENLGEY--FDSKVP---SL-------KGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVK-- 317 (573)
Q Consensus 254 ~~~a~~~l~--G~~vv~~~~lg~~--v~~~~p---~~-------~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~-- 317 (573)
++++++.|. |++|++ +++... .+...+ .+ .+|... +.... ....+..|+....
T Consensus 323 ~~~a~~~L~~~Ga~vv~-v~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~--e~~~~--------~~~~~~~yL~~~~~~ 391 (566)
T PRK06565 323 WEAARRALEAAGAEVIE-VDFPLVSNCEGDRPGAPTVFNRGLVSPEFLHD--ELWEL--------SGWAFDDFLRANGDP 391 (566)
T ss_pred HHHHHHHHHHCCCEEEE-eecCCccccccccccccccccccccchhhhhc--cccch--------hHHHHHHHHHhcCCC
Confidence 999999986 887753 333210 011001 00 011000 00000 0001112221111
Q ss_pred -----------------CCCCH----HHHH----HHH--H-h-hc-CCHHHHHHHHHHHHHHHH-HHHhhcC--CCCEEE
Q 008244 318 -----------------PALDP----DISA----EIG--E-M-LE-ISETVIENCKSIRNEMRS-AISSLLK--DDGILV 364 (573)
Q Consensus 318 -----------------~~~~~----~~~~----~~~--~-g-~~-~s~~~~~~a~~~r~~~~~-~~~~~~~--~~DvLl 364 (573)
+..-+ .... ... . + .. .....|.++++.++..++ .++++|+ +.|.||
T Consensus 392 ~~~sl~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~lDalv 471 (566)
T PRK06565 392 KLNRLADVDGPQIFPHDPGTLPNREGDLAAGMDEYVNMAKRGLKSWDQIPTLPDGLRGLEKTRKLDLEDWMDGLGLDAVL 471 (566)
T ss_pred CCCCHHHhhhhhcccCcccccccchhhhhhhHHHHHHHhhcCCCChhhccchHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 00001 1100 011 0 1 11 112235556666666665 6777776 568999
Q ss_pred EcCCCCCCCCCCCCCCChHHH--HH-hhhhhhccc-cccCCceeeecCccC--CCCCceeEEEeccCCcHHHHHHHHHHH
Q 008244 365 TPTTAYPPPKLGGKEMLSEDY--QN-RAFSLLSIA-SVSGCCQVTVPLGYY--DKCPTSVSFIARHGGDRFLLDTVQNMY 438 (573)
Q Consensus 365 ~Pt~~~~ap~~~~~~~~~~~~--~~-~~~~~t~~~-nl~G~PaisvP~g~~--~glPvGlq~~~~~~~d~~ll~~a~~le 438 (573)
.|+.+..+|..+......... ++ .+...+... +++|+|+||||+|+. .|||+||+|+|+.++|..||++|++||
T Consensus 472 ~P~~~~~~~~~~~~~~~~~~~~~~~g~~~~ng~~a~~~~G~P~vtVP~G~~~~~G~PvGl~~~G~a~~e~~Ll~~A~a~E 551 (566)
T PRK06565 472 FPTVADVGPADADVNPASADIAWSNGVWVANGNLAIRHLGVPTVTVPMGVMADIGMPVGLTFAGRAYDDNALLRFAAAFE 551 (566)
T ss_pred eCCCCCCccccccccchhhhhccccCcccccchhhHHhcCCCeeEeeccccCCCCCCeeEEeecCCcchHHHHHHHHHHH
Confidence 999999988876543321111 11 112233344 899999999999987 799999999999999999999999999
Q ss_pred HHHHH
Q 008244 439 ASLQE 443 (573)
Q Consensus 439 ~~l~~ 443 (573)
++.+.
T Consensus 552 ~~~~~ 556 (566)
T PRK06565 552 ATGSR 556 (566)
T ss_pred HHhcC
Confidence 86644
No 31
>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-67 Score=528.98 Aligned_cols=399 Identities=28% Similarity=0.342 Sum_probs=287.3
Q ss_pred hhcCcccceeeccccCCCCCC-------CCCCCCCCCCCceeeeecccccCCccc-CCCchhhhhcCCCCCCChHHHHHH
Q 008244 29 NIKQDFGAFIEKLQLLPPPQP-------LPPKAPHPLTGLSFAVSDLFDIEGYVT-GFGHPEWARTHSAASRTSTVVSTL 100 (573)
Q Consensus 29 ~~~~~~na~~~~~~~~~~~~a-------~~~~~~gpL~Gvp~~vKD~~~~~g~~t-t~Gs~~~~~~~~~~~~da~~v~~L 100 (573)
...+.+|+++......+..++ +.+...+||+||||+|||||+++|.+| ||+|..+.. +.++.||++|++|
T Consensus 46 ~~~~~~~~~i~~~~~~~~~~a~~~~~~~~~~~~~~~L~Gv~i~IKDnf~tk~~~t~t~~S~~l~~--~~~p~dAtVV~~L 123 (506)
T KOG1211|consen 46 NKWKPLNAKITVINEEALKQAEEVTRRRKNGMEKGPLQGVPIAIKDNFDTKDKPTTTAASWMLEH--YNPPKDATVVKKL 123 (506)
T ss_pred hhcccccceeeeccHHHHHHhhhccccccCCCcCCCcCCceEEEeeceecCCccCCchhhhhhcc--CCCccccHHHHHH
Confidence 444455555554433333333 335678999999999999999999999 777777764 5899999999999
Q ss_pred HhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccc
Q 008244 101 VEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180 (573)
Q Consensus 101 ~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~Gl 180 (573)
|++|||++|||||+||+|+..+++.+||+|+|||++.+.|||||||||++||++++++|+|||||||+|+||++|||+||
T Consensus 124 ~~aGaiilGKTnmdEfamg~~~~~s~~G~t~np~~~~~v~GGSS~GSA~aVaa~l~~~alGtDTgGSvR~PAa~~gvvG~ 203 (506)
T KOG1211|consen 124 REAGAIILGKTNMDEFAMGSSGENSHYGTTRNPLSLWRVPGGSSSGSAAAVAAGLCDFALGTDTGGSVRVPAAYCGVVGF 203 (506)
T ss_pred hhcCceEEccccHHHHhhccccccccCCccCCCCcccccCCCCcchhHHHHHhccchhhccccCCCCccCcHHhcCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc--------------------CCCCceEEEcccch
Q 008244 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--------------------QRSPRQIIIADDCF 240 (573)
Q Consensus 181 kPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~--------------------~~~~~rl~i~~~~~ 240 (573)
|||+|++|+.|++|++.++|++||+||++.|...+.+++.+.+..+ ...+.|++|+.++.
T Consensus 204 KPT~G~~Sr~Gvip~~~SlD~vGi~a~tv~D~~~v~~~~~g~d~~d~~t~~~p~~~~~~~~~~~~~~l~~~r~GIp~~~~ 283 (506)
T KOG1211|consen 204 KPTYGRVSRFGVIPLSNSLDTVGIFARTVYDAVEVLGAIVGIDELDSTTLAQPAPFPIVLELIGSMDLSGLRIGIPKERL 283 (506)
T ss_pred ccCcceecccccchhhhcccccchhhcccchhHHHhhhhcCCCccCcccccCCcccccchhhcccccccccccCceeecc
Confidence 9999999999999999999999999999999998888765533211 23345666666554
Q ss_pred hhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHHHHHHHH---------hhh
Q 008244 241 ELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFK---------NNH 309 (573)
Q Consensus 241 ~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~~~e~~---------~~~ 309 (573)
... .+..+.+.+++..+++. |..+. ...+.......... .... ..+..+.+.++... ...
T Consensus 284 ~~~--~~~~v~~~~~~~~~~l~~~~~~~~-~~~lp~~~~~~~~~--~~~s----~~ea~s~laryd~~~~~~r~~~~~~~ 354 (506)
T KOG1211|consen 284 VQG--LSSGVLSLWEELADLLGSLGAKVN-EVSLPTTINGLCGY--SLSS----ASEAASNLARYDGILYGHRRDFKVAD 354 (506)
T ss_pred ccc--ccHHHHHHHHHHHHHhhcccccce-eeecchhhhccccc--cccc----hhhhhhhHHHHHHHHhhcchhhhhcc
Confidence 322 24577777777776664 44331 12222221111100 0000 11222233332221 111
Q ss_pred HHHHHh-hCCCCCHHHHHHHHHhhcC-----CHHHHHHHHHHHHHHHHHHH---hhcCCCCEEEEcCCCCCCCCCCCCCC
Q 008244 310 NEWIES-VKPALDPDISAEIGEMLEI-----SETVIENCKSIRNEMRSAIS---SLLKDDGILVTPTTAYPPPKLGGKEM 380 (573)
Q Consensus 310 ~~~~~~-~~~~~~~~~~~~~~~g~~~-----s~~~~~~a~~~r~~~~~~~~---~~~~~~DvLl~Pt~~~~ap~~~~~~~ 380 (573)
..++.. +...+..++..++..+.-+ ....+.++++.|......+. ..+++.|+|++||.|.+.+..... .
T Consensus 355 ~~v~~~~rs~~~n~~v~~~i~~g~~~l~~~~~~~~f~~a~~~rr~i~~~~~~~~~~~~~vD~l~~pt~~~~~~~~~~~-~ 433 (506)
T KOG1211|consen 355 EEVYALSRSFGFNFEVKGRILSGNYILAKENDQDYFEKALEVRRLIQEDFNRRKAALEGVDYLVTPTAPPPLYREFEK-E 433 (506)
T ss_pred ceeeeeccccccchhhcceeeccceehhhhhhHHHHHHHHHHHHHHHHhhhhcccccccCCeeeccCCCCcchhhhhh-c
Confidence 122211 1223444555555544322 33445778888888888877 788999999999944333332221 1
Q ss_pred ChHHHHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHHHHHHHH
Q 008244 381 LSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYA 439 (573)
Q Consensus 381 ~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~a~~le~ 439 (573)
...........+|.++|++|+|+|+||+|.. +|+|+|+|+++..++|..++.++.++++
T Consensus 434 ~~~~~~~~~~~~~~~anlaGlP~isiP~G~~~~g~P~glqi~g~~~~e~~~~~l~~~~~~ 493 (506)
T KOG1211|consen 434 TLFAVSTLDDIFTQPANLAGLPAISIPVGLKNGGLPIGLQIMGGAFAEPTLIDLALAIGQ 493 (506)
T ss_pred ccccccccccceeecccccCCCceEEeeeecCCCCceEEEeecccccchHHHHHHHhhcc
Confidence 1111111223479999999999999999998 9999999999999999999999888775
No 32
>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-62 Score=497.39 Aligned_cols=414 Identities=22% Similarity=0.262 Sum_probs=300.5
Q ss_pred hhHHHHhhhhhhHHHHHHH-----H----hh--hhcCcccceeeccccCCCCCCCC-------CCCCCCCCCceeeeecc
Q 008244 7 NLWVLLGLGLAGILLMTKK-----L----KK--NIKQDFGAFIEKLQLLPPPQPLP-------PKAPHPLTGLSFAVSDL 68 (573)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~-----~----~~--~~~~~~na~~~~~~~~~~~~a~~-------~~~~gpL~Gvp~~vKD~ 68 (573)
.+..+|+++|++.++.+|. + +| .+|+.+||+++..++++...++. ....+||+||||+|||+
T Consensus 51 ~il~~~~~~L~~~L~~~e~~~~~vl~Ay~~Ra~~vn~~lNcV~~~i~e~~~~~a~~~d~~~~~~~~k~PL~GvP~SvKe~ 130 (560)
T KOG1212|consen 51 AILKLDATELAQALQSGELTSVEVLCAYCHRAIEVNQKLNCVVEFIFEAALQAAALDDEYTAPLYEKPPLYGVPFSVKES 130 (560)
T ss_pred HHhhcCHHHHHHHHHhCcCcHHHHHHHHHHHHHHhccCcceeeeehhhHHHHHhhchhhhhchhcccCCceecceehhhh
Confidence 3567889999999888884 2 33 88999999999998877665532 22568999999999999
Q ss_pred cccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHH
Q 008244 69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA 148 (573)
Q Consensus 69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsa 148 (573)
|.++|+.+|.|...... .+++.|+.+|+.||++|||++.+||.||..++..+.|+.||+|.||||.+|+|||||||+|
T Consensus 131 ~~vkg~d~T~G~~~~~~--~~a~~ds~~V~~lk~~GaIpf~~TnvPq~~ls~~tsn~v~G~T~NP~d~~rt~GGSSGGEa 208 (560)
T KOG1212|consen 131 ISVKGYDSTAGLLARTN--QPATTDSVIVEFLKKLGAIPFVLTNVPQSLLSYETSNPVYGTTKNPYDLSRTPGGSSGGEA 208 (560)
T ss_pred eeecCccccchhhhccC--CCCccchHHHHHHHHcCCCceeecCCchhhhhhhhcCCCCCCCCChhhccCCCCCCchHHH
Confidence 99999999999987654 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCC----CCCcccccccCHHHHHHHHHHhcCCCc
Q 008244 149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPIST----SLDTVGWFARDPKILRHVGHVLLQLPF 224 (573)
Q Consensus 149 aaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~----~~d~~G~~ar~~~d~~~v~~~~~~~~~ 224 (573)
|++++|.++||+|||.||||||||+|||++|+|||.+|+|..|..|..+ .+-..|||+|+++|+..++..+.+...
T Consensus 209 ALigaggS~lGiGsDigGSiRiPa~f~Gl~GlKPT~~r~~~~G~~~~~~g~~~~~~~~GPm~r~v~dl~~~L~~~i~~~~ 288 (560)
T KOG1212|consen 209 ALLGAGGSLLGIGSDIGGSIRIPAAFCGLFGLKPTPGRVSVKGHHPSVPGRETIMLVIGPMTRDVEDLVLLLRLMIGDSG 288 (560)
T ss_pred HHHhCCcceeccccccCCceeechhhccccccCCCCCeeeecCcCCCCCcccccccccCcccccHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999999999999999876543 345789999999999999987765331
Q ss_pred c---cC------------CCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhh
Q 008244 225 A---AQ------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFH 287 (573)
Q Consensus 225 ~---~~------------~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~ 287 (573)
. ++ .....+++.....+....+.+...+++.+.++.+. |+++++ .. .|.+...+
T Consensus 289 ~~~~~p~~~p~~~~~~~y~~~~~~~ig~~~~dg~~~~~pa~~RAv~~~~~~l~~~g~~~~~-f~--------~~~~~~~~ 359 (560)
T KOG1212|consen 289 PKLLDPYPVPVKFMEVFYKSSDKLVIGYYVDDGFFDPSPAMQRAVQETIDLLEKAGHEVVP-FD--------LPDLKHVA 359 (560)
T ss_pred ccccCCCCCCchhhhhhhhccCCccceEEecCCCCCcCHHHHHHHHHHHHHHHhcCcceeE-ec--------CCcchHHH
Confidence 0 10 01112222221112233457788888888876665 777643 11 22222111
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhHHHH--HhhCC---------CCCHHHHH-----------HHHHhhcCCHHHHHHHHHH
Q 008244 288 KTNGELKNVMRLIQRYEFKNNHNEWI--ESVKP---------ALDPDISA-----------EIGEMLEISETVIENCKSI 345 (573)
Q Consensus 288 ~~~~~l~~~~~~~~~~e~~~~~~~~~--~~~~~---------~~~~~~~~-----------~~~~g~~~s~~~~~~a~~~ 345 (573)
+ .+.. ...+....+...+ ..... .+...... .+.........+..+.+..
T Consensus 360 ~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 431 (560)
T KOG1212|consen 360 D-------MFFR-VMPDDGDYISEMYLLDIGDPTLNLFVKFVELPKVFLGRSLHSYIVLPFCIMDAKNSDTAELRQNYED 431 (560)
T ss_pred H-------HHHH-HcccccchhhHHhhcccCccccchheeeeeccHHHHhhhhhhhHhHHHHHHhhcccchHHHHHHHHH
Confidence 0 0100 0000000000000 00000 01111111 1122223334444555555
Q ss_pred HHHHHHHHH--hhcCCCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCcc-------------
Q 008244 346 RNEMRSAIS--SLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY------------- 410 (573)
Q Consensus 346 r~~~~~~~~--~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~------------- 410 (573)
++.++..+. ....+.||||||+.|.|||+|+...... ..+.||.+||++|+||.+||++.
T Consensus 432 ~e~yrlk~~~~~~~~~~dVll~Ps~~~pA~~h~~P~~~~-----~~~~Yt~LfN~Ld~Pag~vpvt~v~~~d~~~~~~~~ 506 (560)
T KOG1212|consen 432 IESYRLKFILYWLLGKDDVLICPSFPTPAPPHNYPLLLV-----NGFSYTGLFNVLDFPAGVVPVTTVTQKDEKEEEYPM 506 (560)
T ss_pred HHHHHHHHHHHHHcCCCCEEEeCCCCCCCCcCCCchhhc-----cchhHHHHHHhccCCcccccccccchhhhccccccc
Confidence 555555554 4456889999999999999998652211 22458999999999988888763
Q ss_pred -------------C-CCCCceeEEEeccCCcHHHHHHHHHHHHHHHHH
Q 008244 411 -------------Y-DKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQ 444 (573)
Q Consensus 411 -------------~-~glPvGlq~~~~~~~d~~ll~~a~~le~~l~~~ 444 (573)
. .|||+|||+++.+++|+.+|++++.+|+.+...
T Consensus 507 ~D~~~~~~~~g~~~s~GlPigVQVVa~p~~delcL~va~~lE~~~gg~ 554 (560)
T KOG1212|consen 507 NDKWATKVPKGSLDSRGLPIGVQVVANPNQDELCLAVARELERKFGGW 554 (560)
T ss_pred ccHHHHhCcccccCCCCCceeEEEecCCCchHHHHHHHHHHHHHhCCc
Confidence 1 489999999999999999999999999876543
No 33
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=4.3e-17 Score=152.88 Aligned_cols=107 Identities=31% Similarity=0.459 Sum_probs=102.8
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAE 537 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~ 537 (573)
++...++.++.+||.+++.++|++|+.+|++||+++|+++.+|+|||.+|.+||+|+.|++||+.||.+||.+ ++|.++
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999998 699999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244 538 AQQERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
+.++..++.+++|.+.|.+++.++|...
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 9999999999999999999999999754
No 34
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.3e-14 Score=142.67 Aligned_cols=130 Identities=31% Similarity=0.438 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008244 428 RFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA 507 (573)
Q Consensus 428 ~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~ 507 (573)
..++.--...|+++++.....-..+ +.++..++.|+.+|+.|+|..|++.|++||+.+|+++.+|+|||.|
T Consensus 331 ~~~ls~lk~~Ek~~k~~e~~a~~~p---------e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac 401 (539)
T KOG0548|consen 331 PDLLSKLKEAEKALKEAERKAYINP---------EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAAC 401 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCh---------hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 4455556666777666655544443 6688889999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244 508 YLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 508 ~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 566 (573)
|.+++++.+|+.||+++++++|++ +.+++++.++..+..|.++++.|..+..++|..+|
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e 461 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAE 461 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 999999999999999999999998 68999999999999999999999999999997655
No 35
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=7.8e-13 Score=116.43 Aligned_cols=104 Identities=26% Similarity=0.375 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLIC 535 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~-----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~ 535 (573)
..+..++..||.+|+.|+|++|...|+.||++.|.- ..+|.|||.|+++++.++.|+.+|.+||+|+|.| +++.
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~ 172 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE 172 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence 568889999999999999999999999999999975 5899999999999999999999999999999998 6999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244 536 AEAQQERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 536 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
+++.++..++.+++++..|.+-...+|...
T Consensus 173 RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 999999999999999999999999998654
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=3.6e-13 Score=133.35 Aligned_cols=93 Identities=32% Similarity=0.497 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~ 540 (573)
+.+..++++||.+|++|+|++||++|++||+++|+.+..|.||+.||..+|+|++.+++|.+||+++|++ +++++|+.+
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASA 192 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence 5578899999999999999999999999999999999999999999999999999999999999999999 699999999
Q ss_pred HHHHHHHHHHHHHH
Q 008244 541 ERCLDITRRQLKIF 554 (573)
Q Consensus 541 ~~~~~~~~~al~~~ 554 (573)
++.++.+.+++-..
T Consensus 193 ~E~lg~~~eal~D~ 206 (606)
T KOG0547|consen 193 HEQLGKFDEALFDV 206 (606)
T ss_pred HHhhccHHHHHHhh
Confidence 99999999998764
No 37
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.41 E-value=4.5e-13 Score=126.98 Aligned_cols=103 Identities=35% Similarity=0.432 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQER 542 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~ 542 (573)
...++++||.||++|+|++||+||+++|..+|.++.+|.||+++|+++++|..|..||+.|+.||-.+ ++|-+++.+..
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE 176 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34478999999999999999999999999999999999999999999999999999999999999988 69999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCC
Q 008244 543 CLDITRRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 543 ~~~~~~~al~~~~~~~~~~~~~~~ 566 (573)
.++..++|-+.++..+.+.|..-|
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccHH
Confidence 999999999999999999997544
No 38
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.36 E-value=2.5e-12 Score=98.16 Aligned_cols=67 Identities=33% Similarity=0.502 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCc
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDK 529 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~-~~~~Al~~~~~al~l~p 529 (573)
++..|.++|..+++.++|++|+..|+++|+++|+++.+|+++|.||.++| ++++|+++++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 47889999999999999999999999999999999999999999999999 79999999999999998
No 39
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=6.3e-12 Score=122.35 Aligned_cols=106 Identities=25% Similarity=0.412 Sum_probs=99.8
Q ss_pred ccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-H
Q 008244 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-R 532 (573)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~ 532 (573)
...++..+.+++.||.+|++|+|.+|-++|+.+|.++|++ +.+|.|||.++.++|+.++|+.+|++|++|||.+ +
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 3457889999999999999999999999999999999985 7999999999999999999999999999999998 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 533 LICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 533 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
++.++++++..++.|+++.+.|+++.+....
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999987654
No 40
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.3e-11 Score=121.05 Aligned_cols=104 Identities=23% Similarity=0.284 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---------------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
.+...++.||.+|+.|+|..|+..|.+|+..-... ..+|+|++.||+|+++|.+|++.|+++|++
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 46778899999999999999999999999764321 388999999999999999999999999999
Q ss_pred CcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244 528 DKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 528 ~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 566 (573)
+|+| +++|++++++..++.++.|...|.++.+++|..++
T Consensus 287 ~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka 326 (397)
T KOG0543|consen 287 DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA 326 (397)
T ss_pred CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence 9998 79999999999999999999999999999998654
No 41
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.28 E-value=2.9e-11 Score=106.67 Aligned_cols=100 Identities=9% Similarity=0.019 Sum_probs=93.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHH
Q 008244 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLD 545 (573)
Q Consensus 467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~ 545 (573)
+...|..+++.|+|++|+..|++++.++|.+..+|.++|.++..+|++++|+..|+++++++|++ ..++.++.++..++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 66789999999999999999999999999999999999999999999999999999999999998 58899999999999
Q ss_pred HHHHHHHHHhhccccCCCCCC
Q 008244 546 ITRRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 546 ~~~~al~~~~~~~~~~~~~~~ 566 (573)
++++|.+.|+.++.++|...+
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADAS 127 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChH
Confidence 999999999999999986543
No 42
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.22 E-value=6.8e-11 Score=102.57 Aligned_cols=102 Identities=11% Similarity=-0.003 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~ 539 (573)
++..+..+..|..+++.|++++|...|+....++|.++.+|+|+|.|+..+|+|++|+..|.+|+.++|++. .++..++
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999999999999999999984 8899999
Q ss_pred HHHHHHHHHHHHHHHhhccccCC
Q 008244 540 QERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
++..++..+.|.+.|+.+..+--
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999888764
No 43
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.22 E-value=5e-11 Score=121.46 Aligned_cols=103 Identities=28% Similarity=0.374 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHH
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERC 543 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~ 543 (573)
..+..+|+.++..++|++|++.|+++|+++|+++.+|++||.||+++|++++|+.+++++++++|++. ++++++.++..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999984 88889999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCC
Q 008244 544 LDITRRQLKIFHMHWSWSPPIKEH 567 (573)
Q Consensus 544 ~~~~~~al~~~~~~~~~~~~~~~~ 567 (573)
++.+++|++.|+.+..++|...+.
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999976544
No 44
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=5.7e-11 Score=119.66 Aligned_cols=102 Identities=31% Similarity=0.349 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQER 542 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~ 542 (573)
+..++++||..|..|+|+.|+.+|+++|.++|.+..+|.||+.||.++++|++|++|..+.++++|++ +.|.++|-.+.
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF 81 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999 68889999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCC
Q 008244 543 CLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 543 ~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
+++++++|+..|..-+..+|..+
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~n~ 104 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPSNK 104 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCchH
Confidence 99999999999999999998654
No 45
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=4.3e-10 Score=112.04 Aligned_cols=104 Identities=13% Similarity=0.035 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~ 539 (573)
+..+..|+++|..+.+.|++++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++|++ .+++.++.
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 140 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 35577888999999999999999999999999999999999999999999999999999999999999988 47788888
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCC
Q 008244 540 QERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
++...+++++|++.|+++.+.+|..
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 8888899999999999888888854
No 46
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=7.6e-11 Score=106.98 Aligned_cols=100 Identities=30% Similarity=0.409 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~ 539 (573)
...++.+.+.|+.+|..++|..||.+|.++|.++|..+.+|.||+.||+++++|+.+..+|++|++++|+. +.+|.++.
T Consensus 7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~ 86 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQ 86 (284)
T ss_pred chHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHH
Confidence 35588899999999999999999999999999999999999999999999999999999999999999998 68899999
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 008244 540 QERCLDITRRQLKIFHMHWSW 560 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~~ 560 (573)
.......+.++.+.+.+++++
T Consensus 87 ~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 87 WLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHhhccccHHHHHHHHHHHH
Confidence 999889999999999888654
No 47
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.12 E-value=1.2e-09 Score=96.39 Aligned_cols=86 Identities=16% Similarity=0.076 Sum_probs=77.9
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEA 538 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~ 538 (573)
+|.....+.++|..+.+.|+|++|+..|+++++++|+++.+|+++|.|+..+|++++|+..|+++++++|++. .+..++
T Consensus 54 ~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 54 QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 4577999999999999999999999999999999999999999999999999999999999999999999985 555666
Q ss_pred HHHHHHH
Q 008244 539 QQERCLD 545 (573)
Q Consensus 539 ~~~~~~~ 545 (573)
.+...++
T Consensus 134 ~~~~~l~ 140 (144)
T PRK15359 134 NAQIMVD 140 (144)
T ss_pred HHHHHHH
Confidence 6665544
No 48
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.10 E-value=8e-10 Score=96.55 Aligned_cols=108 Identities=16% Similarity=0.112 Sum_probs=99.8
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAE 537 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~ 537 (573)
.+|+.......+|..+++.|++++|++.|+++++.+|++..+|.++|.+|.+++++++|+..++++++++|++ ..++.+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3456678899999999999999999999999999999999999999999999999999999999999999998 478888
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244 538 AQQERCLDITRRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 566 (573)
+.++...+++++|++.|....++.|...+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 99999999999999999999999986544
No 49
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.10 E-value=3.4e-10 Score=115.27 Aligned_cols=107 Identities=17% Similarity=0.139 Sum_probs=96.1
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA 538 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~ 538 (573)
.|..+..+.++|..|-++|++++|+.+|+++|.++|..+.+|.|+|..|-.+|+..+|+++|.+|+.++|.+ .++..++
T Consensus 384 ~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLa 463 (966)
T KOG4626|consen 384 FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLA 463 (966)
T ss_pred ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHH
Confidence 457788889999999999999999999999999999999999999999999999999999999999999998 4888888
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244 539 QQERCLDITRRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 539 ~~~~~~~~~~~al~~~~~~~~~~~~~~~ 566 (573)
.+++--+...+|+..|+.+++++|..++
T Consensus 464 si~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 464 SIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred HHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 8888889999999999999999997665
No 50
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.09 E-value=1.7e-09 Score=100.64 Aligned_cols=105 Identities=19% Similarity=0.215 Sum_probs=97.7
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCcCc-HHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY-LESGS--FLQAEADCTKAINLDKKV-RLIC 535 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~-~~l~~--~~~Al~~~~~al~l~p~~-~~~~ 535 (573)
+|++.+.|..+|..+...|++++|+.+|+++++++|+++.++.++|.++ ...|+ +++|.+.++++++++|++ .+++
T Consensus 69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~ 148 (198)
T PRK10370 69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALM 148 (198)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHH
Confidence 3477999999999999999999999999999999999999999999985 67787 599999999999999998 4888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 536 AEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 536 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
.+|..+...+++++|.+.|++..+++|+-
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 149 LLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999998873
No 51
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.08 E-value=2.2e-10 Score=116.70 Aligned_cols=104 Identities=19% Similarity=0.132 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~ 540 (573)
..+..+-++|.+|+++|..+-||.+|+++|+++|+.+.+|+|+|+++-..|+..||+.+|.+||.++|++. +.+.++.+
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 66777888888888888888888888888888888888888888888888888888888888888888874 77888888
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCC
Q 008244 541 ERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
+..++.+++|.+.|++++...|...
T Consensus 364 ~~E~~~~e~A~~ly~~al~v~p~~a 388 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALEVFPEFA 388 (966)
T ss_pred HHHhccchHHHHHHHHHHhhChhhh
Confidence 8888888888888888888877644
No 52
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.1e-09 Score=104.12 Aligned_cols=97 Identities=31% Similarity=0.387 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICA 536 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~----~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~ 536 (573)
+.++-+++.||.||+.++|..|+++|+++|+..-. ++.+|.|||.|.+.+|+|..|+.||.+|++++|.+ +++++
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 57899999999999999999999999999998644 47999999999999999999999999999999998 68889
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 008244 537 EAQQERCLDITRRQLKIFHMHW 558 (573)
Q Consensus 537 ~~~~~~~~~~~~~al~~~~~~~ 558 (573)
-++++..++.+.+++..-+...
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhh
Confidence 8999999998766666555443
No 53
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.02 E-value=9.8e-10 Score=82.56 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 468 ~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
+.+|..+++.|+|++|+..|+++++.+|+++.+|+.+|.|+..+|++++|+..|+++++++|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3689999999999999999999999999999999999999999999999999999999999986
No 54
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=3.2e-09 Score=100.35 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 008244 432 DTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES 511 (573)
Q Consensus 432 ~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l 511 (573)
.-...|++++..+..++...+ +++..|.+++.+|.+.|.|+.|++.+..||++||....+|..+|.+|+.+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P---------~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDP---------TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCC---------CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence 344567777777777776665 88999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCcCcHHH
Q 008244 512 GSFLQAEADCTKAINLDKKVRLI 534 (573)
Q Consensus 512 ~~~~~Al~~~~~al~l~p~~~~~ 534 (573)
|+|++|++.|++||+++|++..+
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESY 185 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHH
Confidence 99999999999999999999633
No 55
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.99 E-value=2.3e-09 Score=118.28 Aligned_cols=98 Identities=32% Similarity=0.395 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~ 540 (573)
+.+..++++|+.+++.|+|++|++.|+++|++.|+ +..|.|+|.||+++|+|++|+.+|+++++++|++ +++++++.+
T Consensus 125 ~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a 203 (615)
T TIGR00990 125 KYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34678899999999999999999999999999996 7899999999999999999999999999999998 599999999
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 008244 541 ERCLDITRRQLKIFHMHWSW 560 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~~~~ 560 (573)
+..++.+++|+..|.....+
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~ 223 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCII 223 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999888655433
No 56
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.7e-09 Score=98.55 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCC----------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGN----------NATYYSNRAAAYLESGSFLQAEADCT 522 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~--------~p~----------~~~~~~n~a~~~~~l~~~~~Al~~~~ 522 (573)
-+....+.++||.+|++|+|++|..+|..||.. .|. ...++.|.++|+++.++|.++++.|.
T Consensus 175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 345678899999999999999999999999842 233 35899999999999999999999999
Q ss_pred HHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 523 KAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 523 ~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
..|+.+|.+ +++|++++++...=...+|-+.|...+.++|+.
T Consensus 255 eiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 255 EILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 999999998 799999999998866777888888888888764
No 57
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.97 E-value=2.1e-09 Score=102.54 Aligned_cols=107 Identities=18% Similarity=0.131 Sum_probs=101.3
Q ss_pred CccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHH
Q 008244 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LIC 535 (573)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~ 535 (573)
+..++..++.+.++|+.++-.++|..|+..|..||+.+|++..+++.||.+|+.+|+-+.|+.|+.++|++.|++. +..
T Consensus 31 ~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 31 STASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI 110 (504)
T ss_pred hcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence 3456788999999999999999999999999999999999999999999999999999999999999999999996 888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 536 AEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 536 ~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
.++.++..++.+++|...|..-++.+|.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s 138 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPS 138 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999998884
No 58
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.94 E-value=6.6e-10 Score=111.28 Aligned_cols=101 Identities=34% Similarity=0.379 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQE 541 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~ 541 (573)
.++.+.++++.+++.++|+.|+..|++||+++|+.+.+|.||+.++++.++|..|+.|+.+|++++|.+ ++|+++|.+.
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 367788999999999999999999999999999999999999999999999999999999999999998 7999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCC
Q 008244 542 RCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 542 ~~~~~~~~al~~~~~~~~~~~~ 563 (573)
..++.+.+|+..|+.-..+.|.
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPN 104 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcC
Confidence 9999999999999998888885
No 59
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.92 E-value=1.1e-08 Score=101.90 Aligned_cols=100 Identities=12% Similarity=0.044 Sum_probs=83.6
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQ 539 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~ 539 (573)
+|+.+..+..+|..+...|+|++|++.|+++++++|++..+|.|+|.+++..|++++|+++|+++++++|++........
T Consensus 94 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~ 173 (296)
T PRK11189 94 RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLY 173 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999852111122
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 008244 540 QERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~ 559 (573)
.....+..++|+..|.....
T Consensus 174 l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 174 LAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHccCCHHHHHHHHHHHHh
Confidence 23334567888888865443
No 60
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=5e-09 Score=106.76 Aligned_cols=129 Identities=11% Similarity=0.088 Sum_probs=111.4
Q ss_pred eccCCcHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 008244 422 ARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 501 (573)
Q Consensus 422 ~~~~~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~ 501 (573)
...-+...+.++...|.++.+.... ...++.+.-+|..|+-.++|+.|++||+.||..+|++..+|
T Consensus 402 ~s~~~~~~l~~i~~~fLeaa~~~~~--------------~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lW 467 (579)
T KOG1125|consen 402 KSFLDSSHLAHIQELFLEAARQLPT--------------KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLW 467 (579)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCC--------------CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHH
Confidence 4445566777777776654443221 13367788899999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 502 SNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 502 ~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
+.+|..+..-.+.+||+..|++||+|.|.| ++.|.+|..+..++.|++|.++|-.++.+.+..
T Consensus 468 NRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 468 NRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred HHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999 599999999999999999999999999988763
No 61
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.91 E-value=6.8e-09 Score=104.60 Aligned_cols=78 Identities=19% Similarity=0.143 Sum_probs=71.4
Q ss_pred CCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh-Cc
Q 008244 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINL-DK 529 (573)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~---~~n~a~~~~~l~~~~~Al~~~~~al~l-~p 529 (573)
......+|+.+..++++|..|++.|+|++|+.+|+++|+++|++..+ |+|+|.||.++|++++|++++++|+++ ++
T Consensus 65 ~~~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~ 144 (453)
T PLN03098 65 KDGSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL 144 (453)
T ss_pred CCCccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch
Confidence 44556789999999999999999999999999999999999999855 999999999999999999999999998 44
Q ss_pred Cc
Q 008244 530 KV 531 (573)
Q Consensus 530 ~~ 531 (573)
.+
T Consensus 145 ~f 146 (453)
T PLN03098 145 KF 146 (453)
T ss_pred hH
Confidence 44
No 62
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.90 E-value=9.6e-09 Score=84.55 Aligned_cols=102 Identities=19% Similarity=0.127 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-----HHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-----RLICAE 537 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-----~~~~~~ 537 (573)
....+-.+|..+...|+.+.|++.|.++|.+.|..+.+|+||+++|...|+.++|+.|.++|+++...- .++..+
T Consensus 42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR 121 (175)
T KOG4555|consen 42 ASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR 121 (175)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 355666789999999999999999999999999999999999999999999999999999999998543 488889
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 538 AQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
+.+++.++.-+.|-..|+.+.++-.+.
T Consensus 122 g~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 122 GLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 999999999999999999988776543
No 63
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.87 E-value=3.9e-08 Score=78.72 Aligned_cols=97 Identities=27% Similarity=0.339 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHH
Q 008244 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCL 544 (573)
Q Consensus 466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~ 544 (573)
.+.++|..+++.|++++|+..++++++..|++..+++++|.++...+++++|++.+++++++.|.+. .++..+.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999885 778888999999
Q ss_pred HHHHHHHHHHhhccccCC
Q 008244 545 DITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 545 ~~~~~al~~~~~~~~~~~ 562 (573)
+.++++.+.|.......|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 999999999998887766
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.85 E-value=2.8e-08 Score=90.49 Aligned_cols=102 Identities=12% Similarity=0.058 Sum_probs=88.2
Q ss_pred ccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHH
Q 008244 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICA 536 (573)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~ 536 (573)
.+....++...++|..|++.|++..|.+.+++||+++|++..+|.-||..|.++|+.+.|-+.|++|++++|++ ..+..
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNN 108 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN 108 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhh
Confidence 34446678889999999999999999999999999999999999999999999999999999999999999997 46666
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 008244 537 EAQQERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 537 ~~~~~~~~~~~~~al~~~~~~~~ 559 (573)
.+-.+...+.++++.+.|+++..
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~ 131 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALA 131 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHh
Confidence 67667777788888888887764
No 65
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.85 E-value=2.5e-08 Score=110.11 Aligned_cols=103 Identities=9% Similarity=0.030 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~ 539 (573)
|+.+..+..+|..++..|+|++|+.+|+++++++|++..+|.++|.++.++|++++|+..|+++++++|++. .+..++.
T Consensus 396 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~ 475 (615)
T TIGR00990 396 SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGE 475 (615)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 344556666666666666666666666666666666666666666666666666666666666666666653 5555666
Q ss_pred HHHHHHHHHHHHHHHhhccccCCC
Q 008244 540 QERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
++..++.+++|++.|+++..++|.
T Consensus 476 ~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 476 LLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHccCHHHHHHHHHHHHhcCCc
Confidence 666667777777777777776664
No 66
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.83 E-value=8.7e-09 Score=106.66 Aligned_cols=103 Identities=17% Similarity=0.025 Sum_probs=62.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEA 538 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~ 538 (573)
++.+-.+|+-+|.+|+++++|+.|.-.|++|++++|.+....+..|..+.++|+.++|++.+++|+.+||.+. ..|.++
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 3455556666666666666666666666666666666666666666666666666666666666666666653 455556
Q ss_pred HHHHHHHHHHHHHHHHhhccccCC
Q 008244 539 QQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 539 ~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
.++..++++.+|++.++.--.+-|
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCc
Confidence 666666666666666665444444
No 67
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.83 E-value=3.9e-08 Score=83.46 Aligned_cols=101 Identities=12% Similarity=0.052 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----RLICA 536 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----~~~~~ 536 (573)
++.+++.|..++++|+|++|++.|.++++.+|++ ..+++++|.++++.+++++|+..|+++++.+|++ ..++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678899999999999999999999999999876 6789999999999999999999999999999885 37888
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 537 EAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 537 ~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
.+.++..++.++++++.|.......|..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 8999999999999999999988887753
No 68
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.81 E-value=3.7e-08 Score=85.68 Aligned_cols=81 Identities=16% Similarity=0.147 Sum_probs=72.1
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD---KKVRLIC 535 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~---p~~~~~~ 535 (573)
-+|.++.-|.++|.++-.+|+|++||++|.+|+.++|+++..++|.|.||+++|+.++|.+.|+.|+.+. |.+..+.
T Consensus 64 ~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~ 143 (157)
T PRK15363 64 YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILR 143 (157)
T ss_pred hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHH
Confidence 3457799999999999999999999999999999999999999999999999999999999999999987 4444444
Q ss_pred HHHH
Q 008244 536 AEAQ 539 (573)
Q Consensus 536 ~~~~ 539 (573)
.+++
T Consensus 144 ~~A~ 147 (157)
T PRK15363 144 QRAE 147 (157)
T ss_pred HHHH
Confidence 4443
No 69
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.81 E-value=5.6e-08 Score=88.70 Aligned_cols=105 Identities=18% Similarity=0.194 Sum_probs=87.3
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LI 534 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~ 534 (573)
.++..+..++.+|..+...|+|++|+.+|++++++.|+. ..++.++|.+|.++|++++|+..++++++++|++. .+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 356778899999999999999999999999999987763 57999999999999999999999999999999873 44
Q ss_pred HHHHHHHHH--------------HHHHHHHHHHHhhccccCCC
Q 008244 535 CAEAQQERC--------------LDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 535 ~~~~~~~~~--------------~~~~~~al~~~~~~~~~~~~ 563 (573)
..++.++.. +..++++++.+.....++|.
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence 444444433 34477888888888887775
No 70
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.79 E-value=6.8e-08 Score=109.82 Aligned_cols=103 Identities=10% Similarity=0.016 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~ 539 (573)
|+.+..+.++|..+.+.|++++|+..|+++++++|+++.+++|+|.+|..+|++++|+.+|+++++++|++ ......++
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~ 719 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPE 719 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhH
Confidence 35566777777777777777777777777777777777777777777777777777777777777777776 35556666
Q ss_pred HHHHHHHHHHHHHHHhhccccCCC
Q 008244 540 QERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
+......++.+.+.+.++|.++|.
T Consensus 720 ~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 720 QNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcc
Confidence 666667777777777777777663
No 71
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.78 E-value=3.4e-08 Score=75.99 Aligned_cols=62 Identities=16% Similarity=0.312 Sum_probs=59.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 471 g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
...++++++|++|+++++++++++|+++..|..+|.||+++|+|++|+++++++++++|+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 46789999999999999999999999999999999999999999999999999999999875
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=98.78 E-value=7.2e-08 Score=104.76 Aligned_cols=101 Identities=9% Similarity=-0.026 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~ 539 (573)
|+.+..+..+|..+...|++++|+..|+++++++|+++.+|+++|.+|..+|++++|+..++++++++|.+. ..+.++.
T Consensus 335 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~ 414 (553)
T PRK12370 335 HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW 414 (553)
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 466888999999999999999999999999999999999999999999999999999999999999999974 3444555
Q ss_pred HHHHHHHHHHHHHHHhhccccC
Q 008244 540 QERCLDITRRQLKIFHMHWSWS 561 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~~~ 561 (573)
.+...+.+++|++.+.+....+
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~ 436 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQH 436 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhc
Confidence 5666788899999988877654
No 73
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=4.8e-09 Score=108.58 Aligned_cols=105 Identities=19% Similarity=0.248 Sum_probs=89.2
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----------------------------------CHHHHHHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----------------------------------NATYYSNRA 505 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~----------------------------------~~~~~~n~a 505 (573)
++..++.|+..||.+.-+++++.||++|++||+++|+ +..+||-+|
T Consensus 417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG 496 (638)
T KOG1126|consen 417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLG 496 (638)
T ss_pred CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhh
Confidence 3455777888888888888888888888888877664 358999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 506 AAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 506 ~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
++|+|.++++.|+-+|++|+++||.+. ..+..+..+..++..++||+.|+++..++|..
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn 556 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN 556 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999985 77777899999999999999999999999853
No 74
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.75 E-value=3.3e-08 Score=75.18 Aligned_cols=67 Identities=21% Similarity=0.204 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHH-HHHHHHHHHhhccccCC
Q 008244 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLD-ITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 496 ~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~-~~~~al~~~~~~~~~~~ 562 (573)
+++..|.++|.+++..++|++|+.+|+++++++|++. .++.++.++..++ .+++|++.|+++.+++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3678999999999999999999999999999999984 9999999999998 89999999999999987
No 75
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.75 E-value=1e-07 Score=108.43 Aligned_cols=102 Identities=18% Similarity=0.047 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQER 542 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~ 542 (573)
...+.++|..+.+.|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++. +++.++.++.
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999999985 8899999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCC
Q 008244 543 CLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 543 ~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
.++++++|++.|+++..++|...
T Consensus 689 ~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999998543
No 76
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1e-07 Score=94.08 Aligned_cols=97 Identities=18% Similarity=0.215 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH-HHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLI-CAEAQQER 542 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~-~~~~~~~~ 542 (573)
...+.|++.++.+.++|.+|+.+++++|+++|+|..++|+||.||+.+++|+.|+.+|++|++++|+|++. ..+..+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999633 22333333
Q ss_pred HH-HHHHHHHHHHhhcccc
Q 008244 543 CL-DITRRQLKIFHMHWSW 560 (573)
Q Consensus 543 ~~-~~~~~al~~~~~~~~~ 560 (573)
.. ...+..-+.|...+..
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 33 3344445566655543
No 77
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.74 E-value=2.8e-08 Score=78.83 Aligned_cols=81 Identities=21% Similarity=0.299 Sum_probs=71.2
Q ss_pred HcCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHH
Q 008244 476 KDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLK 552 (573)
Q Consensus 476 ~~~~~~~Ai~~y~~ai~~~p~--~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~ 552 (573)
.+++|++|+..|+++++.+|. +..+++++|.||+++|+|++|+..+++ ++.++.+ ...+..|+++..++.+++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 578889999999999999999999999 8888887 577777999999999999999
Q ss_pred HHhhc
Q 008244 553 IFHMH 557 (573)
Q Consensus 553 ~~~~~ 557 (573)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99863
No 78
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.73 E-value=1.9e-07 Score=84.84 Aligned_cols=105 Identities=13% Similarity=0.078 Sum_probs=84.2
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LI 534 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~ 534 (573)
.....+..+...|..+...++|++|+..|++++.+.|+. +.+|+|+|.+|..+|++++|+..|+++++++|.+. .+
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL 109 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 344678889999999999999999999999999997763 46999999999999999999999999999999862 22
Q ss_pred HHHHHHH--------------HHHHHHHHHHHHHhhccccCCC
Q 008244 535 CAEAQQE--------------RCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 535 ~~~~~~~--------------~~~~~~~~al~~~~~~~~~~~~ 563 (573)
..++.++ ..+..+++++..|+++...+|.
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 3333333 3334555777777788887774
No 79
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.72 E-value=1.8e-07 Score=95.51 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~ 540 (573)
..+..+.++|..+++.|+|++|+..++++|+++|+++.+|+++|.+|+.+|+|++|+.+|+++++++|++. ....++.+
T Consensus 34 ~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 34 NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999985 33334444
Q ss_pred HHHH
Q 008244 541 ERCL 544 (573)
Q Consensus 541 ~~~~ 544 (573)
...+
T Consensus 114 ~~kl 117 (356)
T PLN03088 114 DEKI 117 (356)
T ss_pred HHHH
Confidence 3333
No 80
>PRK12370 invasion protein regulator; Provisional
Probab=98.72 E-value=1.3e-07 Score=102.80 Aligned_cols=106 Identities=11% Similarity=-0.029 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 461 KQSAEIAKEKGNQAY---------KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~---------~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
|+.+..+..+|..+. ..+++++|+..++++++++|+++.+|..+|.++...|++++|+..|++|++++|++
T Consensus 292 P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~ 371 (553)
T PRK12370 292 PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS 371 (553)
T ss_pred CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 355677777777654 33558999999999999999999999999999999999999999999999999998
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244 532 R-LICAEAQQERCLDITRRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 532 ~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 566 (573)
. +++.++.++...+++++|+..|+++..++|....
T Consensus 372 ~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~ 407 (553)
T PRK12370 372 ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA 407 (553)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh
Confidence 5 7888899999999999999999999999997543
No 81
>PLN02789 farnesyltranstransferase
Probab=98.71 E-value=1.9e-07 Score=93.19 Aligned_cols=105 Identities=12% Similarity=-0.035 Sum_probs=95.6
Q ss_pred cChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCcCc-HHH
Q 008244 459 NQKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF--LQAEADCTKAINLDKKV-RLI 534 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~-~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~--~~Al~~~~~al~l~p~~-~~~ 534 (573)
.+|+....|..++..+.+.+ ++++|+..++++|+.+|++..+|++|+.++.++++. ++++..++++++++|++ .+.
T Consensus 66 lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW 145 (320)
T PLN02789 66 LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAW 145 (320)
T ss_pred HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHH
Confidence 35588999999999999998 689999999999999999999999999999999974 78899999999999998 588
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 535 CAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 535 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
..++-+...++.++++++.+++..+.+|.
T Consensus 146 ~~R~w~l~~l~~~~eeL~~~~~~I~~d~~ 174 (320)
T PLN02789 146 SHRQWVLRTLGGWEDELEYCHQLLEEDVR 174 (320)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence 88999999999999999999999887764
No 82
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.68 E-value=7.6e-08 Score=72.89 Aligned_cols=59 Identities=22% Similarity=0.263 Sum_probs=55.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 474 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 474 ~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
+++.|+|++|++.|+++++.+|++..+++.++.||++.|++++|.+.++++++.+|++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 46889999999999999999999999999999999999999999999999999999974
No 83
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=4.2e-07 Score=90.46 Aligned_cols=103 Identities=17% Similarity=0.075 Sum_probs=89.1
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEA 538 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~ 538 (573)
||+-..+|.-.|-.|...++...||++|++||+++|.+..+|+.+|++|.-|+.+.=|+-+|++|+++.|++. .+..+|
T Consensus 360 Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG 439 (559)
T KOG1155|consen 360 NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALG 439 (559)
T ss_pred CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 3467888999999999999999999999999999999999999999999999998889999999999998884 777788
Q ss_pred HHHHHHHHHHHHHHHHhhccccCC
Q 008244 539 QQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 539 ~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
+++..+++.++|.++|..+...+-
T Consensus 440 ~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 440 ECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHhccHHHHHHHHHHHHhccc
Confidence 888888888888888888876554
No 84
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.64 E-value=2.6e-07 Score=101.18 Aligned_cols=103 Identities=12% Similarity=-0.103 Sum_probs=96.4
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA 538 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~ 538 (573)
.|+...++.+.+..+.+++++++|+..++++++.+|+++.+++++|.|+.++|+|++|+..|++++..+|++ .++..++
T Consensus 116 ~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a 195 (694)
T PRK15179 116 FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWA 195 (694)
T ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 348899999999999999999999999999999999999999999999999999999999999999988987 5889999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCC
Q 008244 539 QQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 539 ~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
..++..++.++|...|+++.....
T Consensus 196 ~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 196 QSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhhC
Confidence 999999999999999999887553
No 85
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.63 E-value=5.9e-07 Score=78.27 Aligned_cols=73 Identities=18% Similarity=0.066 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRL 533 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~ 533 (573)
|.....+..+|..+++.|+|++|+..|+++++.+|+++..++++|.||..+|++++|+..++++++++|++..
T Consensus 48 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 48 PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 4568899999999999999999999999999999999999999999999999999999999999999999853
No 86
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.63 E-value=4.7e-07 Score=87.19 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=94.1
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH---
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR--- 532 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~---~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~--- 532 (573)
..+..+..++++|..+++.|+|++|+..|+++++.+|+++ .+++++|.+|++++++++|+..|+++++.+|++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4456788999999999999999999999999999999876 6889999999999999999999999999999863
Q ss_pred -HHHHHHHHHHHH--------HHHHHHHHHHhhccccCCCC
Q 008244 533 -LICAEAQQERCL--------DITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 533 -~~~~~~~~~~~~--------~~~~~al~~~~~~~~~~~~~ 564 (573)
+++.++.++... +.+++|.+.|.......|..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 148 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS 148 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence 577777777654 78999999999999888854
No 87
>PRK15331 chaperone protein SicA; Provisional
Probab=98.62 E-value=5.1e-07 Score=78.92 Aligned_cols=127 Identities=13% Similarity=0.029 Sum_probs=105.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 008244 427 DRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAA 506 (573)
Q Consensus 427 d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~ 506 (573)
+..+-+++..+..++..-.+... ...-.++..+..+..|..+|++|+|++|...|+-....+|.++.+|..+|.
T Consensus 6 ~~~~~~~~~~i~~al~~G~tlk~------l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa 79 (165)
T PRK15331 6 NVSEERVAEMIWDAVSEGATLKD------VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAA 79 (165)
T ss_pred hhhHHHHHHHHHHHHHCCCCHHH------HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 34455566666666554322211 112335678889999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244 507 AYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 507 ~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~ 559 (573)
|+..+++|++|+..|..|..++++++ ..+..++++..++..+.|.+.|+.+..
T Consensus 80 ~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 80 VCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999999998874 778889999999999999999998876
No 88
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=6.3e-07 Score=79.65 Aligned_cols=92 Identities=18% Similarity=0.212 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 008244 437 MYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ 516 (573)
Q Consensus 437 le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~ 516 (573)
++.+...+..++...+. ......+..|.++|.+++++++++.||+.++++|+++|.+-.++.+||.+|.++..|++
T Consensus 111 yeeA~skY~~Ale~cp~----~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ee 186 (271)
T KOG4234|consen 111 YEEANSKYQEALESCPS----TSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEE 186 (271)
T ss_pred HHHHHHHHHHHHHhCcc----ccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHH
Confidence 44444444444444441 12245678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCcCcH
Q 008244 517 AEADCTKAINLDKKVR 532 (573)
Q Consensus 517 Al~~~~~al~l~p~~~ 532 (573)
|+.||.+.++++|...
T Consensus 187 aleDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 187 ALEDYKKILESDPSRR 202 (271)
T ss_pred HHHHHHHHHHhCcchH
Confidence 9999999999999974
No 89
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.61 E-value=5.2e-07 Score=85.81 Aligned_cols=105 Identities=15% Similarity=0.024 Sum_probs=80.5
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--Cc-HHHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK--KV-RLICA 536 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p--~~-~~~~~ 536 (573)
+|.....+..+|..++..|++++|++.|+++++..|++..++.+++.+|...|++++|++.++++++..+ .. ..++.
T Consensus 61 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 140 (234)
T TIGR02521 61 DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN 140 (234)
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH
Confidence 4555677777888888888888888888888888888888888888888888888888888888887542 22 35666
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 537 EAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 537 ~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
.+.++...+.++++.+.|.+....+|..
T Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 141 AGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 7777777788888888888888777653
No 90
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=1.9e-07 Score=93.38 Aligned_cols=96 Identities=19% Similarity=0.101 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHH
Q 008244 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLD 545 (573)
Q Consensus 467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~ 545 (573)
|..++..|..+++-++-+..|++|.+++|+++..|+.||+.++-+++|++|+.||++++.|+|++ ..+.+++-+...++
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~ 442 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQH 442 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666666666666666666665 23333333333333
Q ss_pred HHHHHHHHHhhccccCC
Q 008244 546 ITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 546 ~~~~al~~~~~~~~~~~ 562 (573)
.+++..+.|+..-..-|
T Consensus 443 k~~~~m~~Fee~kkkFP 459 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKKFP 459 (606)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 44444444443333333
No 91
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.58 E-value=1.5e-08 Score=97.18 Aligned_cols=98 Identities=24% Similarity=0.264 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQER 542 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~ 542 (573)
+...+-++...+..|.+++||+.|+.+|+++|..+..|.+|+.+|+++++...|++||+.|+++||+. +-+..++.++.
T Consensus 114 a~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 114 ANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence 44556677788899999999999999999999999999999999999999999999999999999998 46667889999
Q ss_pred HHHHHHHHHHHHhhccccC
Q 008244 543 CLDITRRQLKIFHMHWSWS 561 (573)
Q Consensus 543 ~~~~~~~al~~~~~~~~~~ 561 (573)
.++.|+++.++|+.+.+++
T Consensus 194 llg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLD 212 (377)
T ss_pred HhhchHHHHHHHHHHHhcc
Confidence 9999999999999988765
No 92
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.54 E-value=2.5e-07 Score=72.14 Aligned_cols=68 Identities=16% Similarity=0.261 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~-------p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~ 528 (573)
|..+..+.++|..++..|+|++|+..|++++++. |.-+..++|+|.||..+|++++|++.+++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5678889999999999999999999999999762 1236899999999999999999999999999874
No 93
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.54 E-value=7.3e-07 Score=98.72 Aligned_cols=105 Identities=11% Similarity=0.004 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~ 539 (573)
|+.+..+..+|..+.+.|++++|+..|+++++++|+++.++.++|.+|.++|++++|+..|+++++.+|++. .....+.
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~ 360 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAA 360 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 466788999999999999999999999999999999999999999999999999999999999999999985 4445677
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCC
Q 008244 540 QERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
++...+.+++|++.|+++.+..|...
T Consensus 361 al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 88888999999999999999888643
No 94
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.4e-07 Score=92.61 Aligned_cols=100 Identities=33% Similarity=0.376 Sum_probs=86.0
Q ss_pred CCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHH
Q 008244 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLI 534 (573)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~ 534 (573)
.+.+....++..+.+|+.++++.+|.+|+..|+.||++.|+++.+|.||+.+|+.+++|++|+-++++.++++|.+ +..
T Consensus 41 ~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~ 120 (486)
T KOG0550|consen 41 FSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQ 120 (486)
T ss_pred ccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccc
Confidence 3334456788899999999999999999999999999999999999999999999999999999999999999997 466
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 008244 535 CAEAQQERCLDITRRQLKIFH 555 (573)
Q Consensus 535 ~~~~~~~~~~~~~~~al~~~~ 555 (573)
.+.++++..++...++.+.|+
T Consensus 121 ~r~~~c~~a~~~~i~A~~~~~ 141 (486)
T KOG0550|consen 121 LREGQCHLALSDLIEAEEKLK 141 (486)
T ss_pred cchhhhhhhhHHHHHHHHHhh
Confidence 666777777766666665554
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.52 E-value=5.9e-07 Score=98.43 Aligned_cols=102 Identities=6% Similarity=-0.069 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~ 539 (573)
++.+..+..+|.+..+.|+|++|...+..+++++|++..++.+++.++.+++++++|+..+++++..+|++. .++.++.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999999999999999999999995 8899999
Q ss_pred HHHHHHHHHHHHHHHhhccccCC
Q 008244 540 QERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
++..++++++|...|++...-+|
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p 185 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHP 185 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCC
Confidence 99999999999999999997554
No 96
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.51 E-value=9.8e-07 Score=97.70 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLK----AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LIC 535 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~----Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~ 535 (573)
|+....+..+|..+++.|++++ |+..|+++++++|+++.++.++|.++.+.|++++|+..++++++++|++. ...
T Consensus 243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~ 322 (656)
T PRK15174 243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA 322 (656)
T ss_pred CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4568888999999999999996 89999999999999999999999999999999999999999999999985 777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 536 AEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 536 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
.++.++...+++++|++.|+.....+|..
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 78899999999999999999999888853
No 97
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.49 E-value=9.9e-07 Score=82.19 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=86.5
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAE 537 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~ 537 (573)
..++....+..+|...++.|+|.+|+..++++..++|++..+|+-+|.+|.++|++++|-..|.+++++.|+.+ ..-.+
T Consensus 95 ~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNl 174 (257)
T COG5010 95 AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNL 174 (257)
T ss_pred cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhH
Confidence 44555666777899999999999999999999999999999999999999999999999999999999999874 66667
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCC
Q 008244 538 AQQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
+..+...++++.|.+.+..+....+
T Consensus 175 gms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 175 GMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 7777777888888888776665443
No 98
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.48 E-value=2.3e-06 Score=81.26 Aligned_cols=103 Identities=15% Similarity=0.121 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAE 537 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~--p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~ 537 (573)
+.....+.+.|..++..|++++|++.|.++++.. +.....+.++|.++...|++++|+..++++++.+|++. .++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 175 (234)
T TIGR02521 96 PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL 175 (234)
T ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHH
Confidence 3445678899999999999999999999999864 55678999999999999999999999999999999874 77788
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 538 AQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
+.++...+.+++|.+.|+......|.
T Consensus 176 a~~~~~~~~~~~A~~~~~~~~~~~~~ 201 (234)
T TIGR02521 176 AELYYLRGQYKDARAYLERYQQTYNQ 201 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999988877553
No 99
>PLN02789 farnesyltranstransferase
Probab=98.47 E-value=3.1e-06 Score=84.54 Aligned_cols=104 Identities=14% Similarity=0.059 Sum_probs=86.4
Q ss_pred ChHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQW--LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICA 536 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~--~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~ 536 (573)
+|+..+.|..++..+.+.+++ +++++.++++|+++|++..+|++|+.++..+++|++|+++|+++|++||++. ++..
T Consensus 102 npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~ 181 (320)
T PLN02789 102 NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQ 181 (320)
T ss_pred CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHH
Confidence 447888999999999888874 7899999999999999999999999999999999999999999999999984 7777
Q ss_pred HHHHHHHH---H----HHHHHHHHHhhccccCCC
Q 008244 537 EAQQERCL---D----ITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 537 ~~~~~~~~---~----~~~~al~~~~~~~~~~~~ 563 (573)
++.+...+ + ..++.+....++..++|.
T Consensus 182 R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~ 215 (320)
T PLN02789 182 RYFVITRSPLLGGLEAMRDSELKYTIDAILANPR 215 (320)
T ss_pred HHHHHHhccccccccccHHHHHHHHHHHHHhCCC
Confidence 76655433 1 124567777777777774
No 100
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3.2e-06 Score=80.90 Aligned_cols=123 Identities=18% Similarity=0.098 Sum_probs=105.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 008244 426 GDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRA 505 (573)
Q Consensus 426 ~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a 505 (573)
++...-++...++..++. +|++++-|.-+|..|++.+++..|...|.+|+++.|+++..+.-.|
T Consensus 134 ~~~~~~~l~a~Le~~L~~----------------nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~a 197 (287)
T COG4235 134 AEQEMEALIARLETHLQQ----------------NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLA 197 (287)
T ss_pred CcccHHHHHHHHHHHHHh----------------CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 344455555666654443 4578999999999999999999999999999999999999999999
Q ss_pred HHHHHcCC---HHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 506 AAYLESGS---FLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 506 ~~~~~l~~---~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
.+++...+ -.++...+++++++||++ .+.+.++......+++.+|...+++..+..|+-
T Consensus 198 eaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 198 EALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 99987653 589999999999999999 588888888888899999999999999988864
No 101
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.45 E-value=2e-06 Score=83.38 Aligned_cols=98 Identities=8% Similarity=-0.064 Sum_probs=67.5
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHH
Q 008244 465 EIAKEKGNQA-YKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----RLICA 536 (573)
Q Consensus 465 ~~~~~~g~~~-~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----~~~~~ 536 (573)
...++.+..+ ++.|+|++|+..|++.|+..|++ +.+++.+|.+|+..|+|++|+..|+++++..|++ .+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3445555554 55677777777777777777776 4677777777777777777777777777777764 36666
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCC
Q 008244 537 EAQQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 537 ~~~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
.+.++..++.+++|.+.|+.....-|
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 67777667777777777776665554
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.45 E-value=6.5e-07 Score=83.34 Aligned_cols=91 Identities=13% Similarity=0.057 Sum_probs=80.7
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHH-HHHHH--HHHHHH
Q 008244 477 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQE-RCLDI--TRRQLK 552 (573)
Q Consensus 477 ~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~-~~~~~--~~~al~ 552 (573)
.++.++++..++++++.+|++..+|.++|.+|..+|++++|+..|+++++++|++. .+...+.++ ...+. .+++.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 67889999999999999999999999999999999999999999999999999985 777778765 44455 599999
Q ss_pred HHhhccccCCCCCCC
Q 008244 553 IFHMHWSWSPPIKEH 567 (573)
Q Consensus 553 ~~~~~~~~~~~~~~~ 567 (573)
.|+++.+.+|...+.
T Consensus 132 ~l~~al~~dP~~~~a 146 (198)
T PRK10370 132 MIDKALALDANEVTA 146 (198)
T ss_pred HHHHHHHhCCCChhH
Confidence 999999999975543
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.44 E-value=1.7e-06 Score=83.35 Aligned_cols=106 Identities=13% Similarity=0.016 Sum_probs=87.8
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHh
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT---YYSNRAAAYLES--------GSFLQAEADCTKAINL 527 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~---~~~n~a~~~~~l--------~~~~~Al~~~~~al~l 527 (573)
.++.....+..+|..+++.+++++|+..|+++++..|+++. +++++|.|++++ +++++|++.++++++.
T Consensus 65 ~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 65 FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 33445678899999999999999999999999999998765 799999999987 8899999999999999
Q ss_pred CcCcH----HH--------------HHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 528 DKKVR----LI--------------CAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 528 ~p~~~----~~--------------~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
+|++. +. +..+..+...+++++|+..|+......|..
T Consensus 145 ~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (235)
T TIGR03302 145 YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDT 199 (235)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Confidence 99973 11 234555556688999999999888776643
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=7.3e-07 Score=91.29 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 008244 429 FLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY 508 (573)
Q Consensus 429 ~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~ 508 (573)
.|+.+...|.++......++...| .+...|+.+|-.+-...++.+||..|++|+++.|....++||+|.+|
T Consensus 438 VLy~ls~efdraiDcf~~AL~v~P---------nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~ 508 (579)
T KOG1125|consen 438 VLYNLSGEFDRAVDCFEAALQVKP---------NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC 508 (579)
T ss_pred HHHhcchHHHHHHHHHHHHHhcCC---------chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence 478888888888887777776666 78999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCcC
Q 008244 509 LESGSFLQAEADCTKAINLDKK 530 (573)
Q Consensus 509 ~~l~~~~~Al~~~~~al~l~p~ 530 (573)
+.+|.|+||+.+|-.||.+.+.
T Consensus 509 mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 509 MNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999877
No 105
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.37 E-value=1.3e-05 Score=68.77 Aligned_cols=100 Identities=16% Similarity=0.093 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----RLIC 535 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----~~~~ 535 (573)
.+..+.+.|...++.|+|++|++.++......|.. ..+.+.++.+|++.++|++|+..+++=++|+|++ .++|
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 47789999999999999999999999999988864 6899999999999999999999999999999997 4888
Q ss_pred HHHHHHHHHHH---------------HHHHHHHHhhccccCC
Q 008244 536 AEAQQERCLDI---------------TRRQLKIFHMHWSWSP 562 (573)
Q Consensus 536 ~~~~~~~~~~~---------------~~~al~~~~~~~~~~~ 562 (573)
.+|.....+.. .++|++.|+.-...=|
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 88877766655 7788888876665444
No 106
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.37 E-value=2.8e-06 Score=71.88 Aligned_cols=71 Identities=13% Similarity=0.072 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
.....++.+|..+++.++|++|+..|+++++..|++ ..+++++|.++.+++++++|+..++++++..|++.
T Consensus 37 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 37 YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 446778999999999999999999999999999885 68899999999999999999999999999999975
No 107
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.35 E-value=3.7e-06 Score=95.03 Aligned_cols=102 Identities=14% Similarity=0.150 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQER 542 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~ 542 (573)
.+..+...|..+.+.|++++|++.|+++|+++|+++.++.+++.++...|++++|+..++++++.+|++..++.++.++.
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~ 127 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANLLALAYVYK 127 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35556666666666666666666666666666666666666666666666666666666666666666533555566666
Q ss_pred HHHHHHHHHHHHhhccccCCCC
Q 008244 543 CLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 543 ~~~~~~~al~~~~~~~~~~~~~ 564 (573)
..+..++|++.|++.....|..
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~~ 149 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQT 149 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCC
Confidence 6666666666666666666654
No 108
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.35 E-value=2.8e-06 Score=77.60 Aligned_cols=103 Identities=13% Similarity=-0.035 Sum_probs=56.0
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----RLIC 535 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----~~~~ 535 (573)
+|+....|.-++..|.+.|+.+.|-+.|++|++++|++...++|.|--+...|+|++|.+.|++|+.. |.+ ..+-
T Consensus 65 DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~e 143 (250)
T COG3063 65 DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLE 143 (250)
T ss_pred CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCCcchhhh
Confidence 34555556666666666666666666666666666666555555555555555555555555555542 333 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 536 AEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 536 ~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
..+.+....+....+-..|.+++.++|.
T Consensus 144 N~G~Cal~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 144 NLGLCALKAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred hhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence 4444444445555555555555555543
No 109
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=7.7e-06 Score=81.69 Aligned_cols=103 Identities=13% Similarity=0.062 Sum_probs=95.9
Q ss_pred CccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHH
Q 008244 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLIC 535 (573)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~ 535 (573)
.+-+|..-.+|+-+|..|--.+-..=|+-.|++|++..|++...|.-+|.||.++++.++|+++|.+|+...-.+ .+++
T Consensus 391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 345678899999999999999999999999999999999999999999999999999999999999999987655 5999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Q 008244 536 AEAQQERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 536 ~~~~~~~~~~~~~~al~~~~~~~~ 559 (573)
++|++++.++..++|.+.|++...
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999998876
No 110
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.31 E-value=1e-05 Score=91.47 Aligned_cols=103 Identities=16% Similarity=-0.071 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~ 540 (573)
.....+..++..+...|++++|++.++++++..|++..++.++|.++...|++++|++.++++++++|++. ..+.++..
T Consensus 357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~ 436 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWT 436 (765)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 44667788999999999999999999999999999999999999999999999999999999999999984 77888888
Q ss_pred HHHHHHHHHHHHHHhhccccCCCC
Q 008244 541 ERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
...++++++|.+.++...+..|..
T Consensus 437 al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 437 ALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCC
Confidence 888899999999999988888753
No 111
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=2.3e-05 Score=72.63 Aligned_cols=124 Identities=17% Similarity=0.133 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 008244 430 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYL 509 (573)
Q Consensus 430 ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~ 509 (573)
+++.-.....+..-...... ++|.+...++.+-...-.+|+-.+||+..++-++.-++|.++|..++..|+
T Consensus 95 ~lEa~~~~~~A~e~y~~lL~---------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~ 165 (289)
T KOG3060|consen 95 LLEATGNYKEAIEYYESLLE---------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYL 165 (289)
T ss_pred HHHHhhchhhHHHHHHHHhc---------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44444444444444444333 334666677777777788899999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHH-HHHHHHH---HHHHHHHHHHhhccccCC
Q 008244 510 ESGSFLQAEADCTKAINLDKKVRLICAE-AQQERCL---DITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 510 ~l~~~~~Al~~~~~al~l~p~~~~~~~~-~~~~~~~---~~~~~al~~~~~~~~~~~ 562 (573)
.+++|++|.-++++.+=++|.++.++.+ ++++..+ +.++-+.++|+++.+++|
T Consensus 166 ~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 166 SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999755554 6666666 678889999999999998
No 112
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.30 E-value=8e-06 Score=84.99 Aligned_cols=100 Identities=13% Similarity=0.031 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH--HHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR--LICAEAQQE 541 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~--~~~~~~~~~ 541 (573)
...+..+|..+++.+++++|+..|+++++.+|++..+++.+|.+|.+.|++++|++.++++++++|++. .+...+.++
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 259 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence 445667777778888888888888888888888777888888888888888888888888888777752 344555666
Q ss_pred HHHHHHHHHHHHHhhccccCCC
Q 008244 542 RCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 542 ~~~~~~~~al~~~~~~~~~~~~ 563 (573)
...+.+++|.+.|++..+..|.
T Consensus 260 ~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 260 QALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC
Confidence 6667777777777776666653
No 113
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.30 E-value=5e-06 Score=98.40 Aligned_cols=104 Identities=15% Similarity=0.048 Sum_probs=93.9
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEA 538 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~ 538 (573)
.|.....+..+|..+.+.|++++|++.|+++++++|++..++++++.+|..+|++++|++.++++++.+|++. ....++
T Consensus 599 ~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la 678 (1157)
T PRK11447 599 QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVA 678 (1157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 3455667889999999999999999999999999999999999999999999999999999999999999884 667778
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCC
Q 008244 539 QQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 539 ~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
.++..++++++|.+.|+......|.
T Consensus 679 ~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 679 LAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 8888889999999999998877653
No 114
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.29 E-value=5.1e-06 Score=98.36 Aligned_cols=103 Identities=13% Similarity=0.140 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT--------------YYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~--------------~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
+.+..+..+|..++++|++++|+..|+++++++|++.. .+.+++.++++.|++++|+..|++++++
T Consensus 301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45667777777777778888888888888777776532 2234567777777778888888888777
Q ss_pred CcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 528 DKKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 528 ~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
+|++. +++.++.++...+++++|++.|+++.+++|..
T Consensus 381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~ 418 (1157)
T PRK11447 381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN 418 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 77763 66667777777777788888887777777653
No 115
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.29 E-value=3.4e-06 Score=66.75 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~a 524 (573)
+...+..+|..+++.|+|++|+..+++ ++.++.+...++.+|.|++++|+|++|++.++++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 566788899999999999999999999 9999999899999999999999999999999875
No 116
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.27 E-value=9.1e-06 Score=78.17 Aligned_cols=100 Identities=18% Similarity=0.134 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHH
Q 008244 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCL 544 (573)
Q Consensus 466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~ 544 (573)
.+.++...++..|++..||+..++.|++.|-++.+|..|+.||...|+...|+.|.+.+-+|..++. .+|...+++..+
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence 3456667778899999999999999999999999999999999999999999999999999998884 888888999999
Q ss_pred HHHHHHHHHHhhccccCCCCC
Q 008244 545 DITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 545 ~~~~~al~~~~~~~~~~~~~~ 565 (573)
+..+.+|......++++|..+
T Consensus 237 gd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred hhHHHHHHHHHHHHccCcchh
Confidence 999999999999999999654
No 117
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.26 E-value=1.1e-05 Score=83.85 Aligned_cols=103 Identities=13% Similarity=0.067 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~-~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~ 540 (573)
.....+..+|..+.+.|++++|++.|+++++.+|.+ ...+..++.+|.+.|++++|+..++++++++|+.......+..
T Consensus 212 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~ 291 (389)
T PRK11788 212 QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQL 291 (389)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345677888999999999999999999999988876 4677888999999999999999999999999987666777888
Q ss_pred HHHHHHHHHHHHHHhhccccCCCC
Q 008244 541 ERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
+...+.+++|++.|+...+..|..
T Consensus 292 ~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 292 LEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHhCcCH
Confidence 888888999999998888887754
No 118
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.24 E-value=2.2e-06 Score=54.83 Aligned_cols=34 Identities=29% Similarity=0.415 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 498 ~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
+.+|+++|.+|+.++++++|+.+|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999975
No 119
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.24 E-value=1.2e-05 Score=86.44 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=89.4
Q ss_pred CCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HH
Q 008244 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RL 533 (573)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~ 533 (573)
+....+|.....|+.+|.+|-++|+.++++.+.-.|--++|++...|...+.-..++|++++|.-+|.+||+.+|.+ +.
T Consensus 164 EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~ 243 (895)
T KOG2076|consen 164 EVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWEL 243 (895)
T ss_pred HHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHH
Confidence 44556777788888888888888888888888888888888888888888888888888888888888888888876 57
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 534 ICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 534 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
.+.+...+..+|...+|+.-|.+.+++.|+
T Consensus 244 ~~ers~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 244 IYERSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 788888888888888888888888888873
No 120
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.22 E-value=2e-05 Score=69.75 Aligned_cols=77 Identities=23% Similarity=0.163 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDK----------QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-----------FLQAEA 519 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~----------~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~-----------~~~Al~ 519 (573)
|..++.+.+.|..+.... -+++|+..|++||.++|+...+++++|++|..++. |++|..
T Consensus 22 P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 22 PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATE 101 (186)
T ss_dssp TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 366888888888886653 35789999999999999999999999999997654 789999
Q ss_pred HHHHHHHhCcCcHHHHHH
Q 008244 520 DCTKAINLDKKVRLICAE 537 (573)
Q Consensus 520 ~~~~al~l~p~~~~~~~~ 537 (573)
+|++|+..+|++..|...
T Consensus 102 ~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 102 YFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp HHHHHHHH-TT-HHHHHH
T ss_pred HHHHHHhcCCCcHHHHHH
Confidence 999999999998655443
No 121
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.22 E-value=1.6e-05 Score=84.76 Aligned_cols=103 Identities=15% Similarity=0.049 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCHHHHHHHH----------------------------------
Q 008244 463 SAEIAKEKGNQAYKDKQ---WLKAISFYTEAIKLNGNNATYYSNRA---------------------------------- 505 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~---~~~Ai~~y~~ai~~~p~~~~~~~n~a---------------------------------- 505 (573)
.+-.++-+|..++...+ +++|+.+|++||+++|+++.+|..++
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 45666778888876654 88999999999999998865444433
Q ss_pred ----------HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244 506 ----------AAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 506 ----------~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
..+...|++++|...+++|++++|+..++..+++++...|+.++|...|+++..++|...
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 333367899999999999999999877899999999999999999999999999999754
No 122
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.20 E-value=3.1e-06 Score=76.35 Aligned_cols=105 Identities=10% Similarity=0.033 Sum_probs=97.3
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAE 537 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~ 537 (573)
++.+.++.++++|+.|-..|=+.-|.-.|++++.+.|+.+..++.+|.-+..-|+|+.|.+.|+..+++||.+ .+...+
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999998 588999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 538 AQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
+....+-++++-|.+.|.+.++-+|.
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~ 165 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPN 165 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCC
Confidence 99999999999999999988887774
No 123
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.19 E-value=1.2e-05 Score=82.65 Aligned_cols=104 Identities=14% Similarity=-0.082 Sum_probs=91.9
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-----HH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-----RL 533 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-----~~ 533 (573)
..+.....+...|..+..+|++++|+..|+++++++|++..++..+|.+|+..|++++|+..++++++..|.. ..
T Consensus 109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~ 188 (355)
T cd05804 109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHN 188 (355)
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHH
Confidence 4456677888899999999999999999999999999999999999999999999999999999999998743 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244 534 ICAEAQQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 534 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
++.++.++...++++++++.|+......|
T Consensus 189 ~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 189 WWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 55788888999999999999998765444
No 124
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.18 E-value=1.6e-05 Score=70.18 Aligned_cols=98 Identities=12% Similarity=0.012 Sum_probs=83.0
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--HH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV--RL 533 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~--~~ 533 (573)
+.+-.......++..++..|+|++|+..|+++++..|+. ..+.++++.+++..|+|++|+..++..- ++.+ ..
T Consensus 43 ~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~--~~~~~~~~ 120 (145)
T PF09976_consen 43 SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP--DEAFKALA 120 (145)
T ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc--CcchHHHH
Confidence 334557788899999999999999999999999988765 5789999999999999999999997632 2223 47
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 008244 534 ICAEAQQERCLDITRRQLKIFHMHW 558 (573)
Q Consensus 534 ~~~~~~~~~~~~~~~~al~~~~~~~ 558 (573)
...+|.++...+.+++|.+.|+.++
T Consensus 121 ~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 121 AELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 7778999999999999999999764
No 125
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=4.5e-06 Score=85.28 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR- 532 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~-------~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~- 532 (573)
|..+-.+.++|-+.|+.+.|.+|+..|+.+++.-+. -...+.|+|.+|.++++|++|+.+|+++|.+.|++.
T Consensus 411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~ 490 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS 490 (611)
T ss_pred CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh
Confidence 344566677777777777777777777777743221 245677777777777777777777777777777763
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 533 LICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 533 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
.+...|.++..++..+.|...||+++-++|.
T Consensus 491 ~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 5666667777777777777777777777663
No 126
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.16 E-value=2.2e-05 Score=71.54 Aligned_cols=69 Identities=25% Similarity=0.298 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhC
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS--------------FLQAEADCTKAINLD 528 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~--------------~~~Al~~~~~al~l~ 528 (573)
....+.++|..+.+.|+|++|+..|+++++..|++...+.++|.+|..+++ +++|++.++++++++
T Consensus 71 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 71 RSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 467899999999999999999999999999999999999999999999988 677888888888888
Q ss_pred cCc
Q 008244 529 KKV 531 (573)
Q Consensus 529 p~~ 531 (573)
|++
T Consensus 151 p~~ 153 (172)
T PRK02603 151 PNN 153 (172)
T ss_pred chh
Confidence 886
No 127
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.16 E-value=2e-06 Score=54.83 Aligned_cols=34 Identities=47% Similarity=0.658 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008244 486 FYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519 (573)
Q Consensus 486 ~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~ 519 (573)
+|++||+++|+++.+|+|+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4899999999999999999999999999999963
No 128
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.16 E-value=6.4e-06 Score=81.59 Aligned_cols=101 Identities=16% Similarity=0.077 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~ 540 (573)
..+..+...|..+.+.|++++|+..|+++++++|++..++..++.++..+|+++++.+.++...+..|++. .....+.+
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~ 223 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAA 223 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 45778888999999999999999999999999999877777777777777777666555555555544442 33445666
Q ss_pred HHHHHHHHHHHHHHhhccccCC
Q 008244 541 ERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~~~~~~ 562 (573)
+..+++.++|+..|++..+.+|
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHHST
T ss_pred hccccccccccccccccccccc
Confidence 6666777777777776666655
No 129
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.15 E-value=3.4e-05 Score=74.23 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINLDKKV----RLI 534 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~---~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----~~~ 534 (573)
..++.++..|..+++.|+|++|++.|++.+...|....+ .+++|.+|+++++|++|+..+++.++++|++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 357778899999999999999999999999999998644 4999999999999999999999999999997 378
Q ss_pred HHHHHHH
Q 008244 535 CAEAQQE 541 (573)
Q Consensus 535 ~~~~~~~ 541 (573)
+.++.+.
T Consensus 110 Y~~g~~~ 116 (243)
T PRK10866 110 YMRGLTN 116 (243)
T ss_pred HHHHHhh
Confidence 8888664
No 130
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.15 E-value=2.9e-05 Score=65.42 Aligned_cols=93 Identities=15% Similarity=-0.025 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---cH-HHHHH
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---VR-LICAE 537 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~---~~-~~~~~ 537 (573)
..+++.+..+-..|+.++|+..|+++++...+. ..++.++|.+|..+|++++|+..+++++.-.|+ +. .....
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467889999999999999999999999976554 578899999999999999999999999998887 32 44445
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 008244 538 AQQERCLDITRRQLKIFHMH 557 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~~~~~ 557 (573)
+.++..+++.+++++.+...
T Consensus 82 Al~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 66667777777777776543
No 131
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.11 E-value=3.3e-05 Score=61.28 Aligned_cols=67 Identities=28% Similarity=0.386 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~ 530 (573)
...+...|..+...+++++|++.|+++++..|.+...+.+++.++...+++++|...++++++++|+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 34 ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 4778899999999999999999999999999999999999999999999999999999999998874
No 132
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.11 E-value=6.8e-06 Score=83.29 Aligned_cols=69 Identities=12% Similarity=0.032 Sum_probs=65.0
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH----HHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008244 493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR----LICAEAQQERCLDITRRQLKIFHMHWSWS 561 (573)
Q Consensus 493 ~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~----~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 561 (573)
.+|+++.+|+|+|.+|+++|+|++|+..|++||+++|++. +++.++-++..++++++|+.+|.++..+.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999984 58999999999999999999999999873
No 133
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.09 E-value=2.5e-05 Score=87.43 Aligned_cols=105 Identities=15% Similarity=0.134 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQE 541 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~ 541 (573)
.....+...|..+..+|+|++|++.|+++++.+|+++.++..++..|..++++++|++.++++++++|++..+..++.+.
T Consensus 100 ~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~ 179 (822)
T PRK14574 100 ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLN 179 (822)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHH
Confidence 44566667788999999999999999999999999999999999999999999999999999999999986555556666
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCC
Q 008244 542 RCLDITRRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 542 ~~~~~~~~al~~~~~~~~~~~~~~~ 566 (573)
...+...+|++.|++....+|...+
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~n~e 204 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPTSEE 204 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCCCHH
Confidence 5566676699999999999986544
No 134
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.07 E-value=8.3e-05 Score=69.67 Aligned_cols=101 Identities=20% Similarity=0.179 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----RLI 534 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----~~~ 534 (573)
..++.+++.|..+++.|+|.+|++.|++.+...|.. ..+.+.+|.++++.++|.+|+..+++-++..|++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 347889999999999999999999999999998875 6899999999999999999999999999999997 377
Q ss_pred HHHHHHHHHH-----------HHHHHHHHHHhhccccCC
Q 008244 535 CAEAQQERCL-----------DITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 535 ~~~~~~~~~~-----------~~~~~al~~~~~~~~~~~ 562 (573)
+.++.+...+ ...++|+..|+.-...-|
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP 121 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP 121 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc
Confidence 7777654333 335577777776655444
No 135
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.07 E-value=2.5e-05 Score=90.02 Aligned_cols=105 Identities=16% Similarity=0.037 Sum_probs=86.9
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEA 538 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~ 538 (573)
+|+....+..++..+++.|+|++|++.++++++.+|.+..++..+|.+++..|++++|+..|+++++++|++. .++.++
T Consensus 155 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~ 234 (899)
T TIGR02917 155 DPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALA 234 (899)
T ss_pred CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 3455667888888888888888888888888888888888888888888888888888888888888888874 667777
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 539 QQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 539 ~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
.++...+.+++|.+.++...+..|..
T Consensus 235 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 260 (899)
T TIGR02917 235 TILIEAGEFEEAEKHADALLKKAPNS 260 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 77777888888888888887777653
No 136
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.07 E-value=6.5e-05 Score=80.99 Aligned_cols=100 Identities=21% Similarity=0.169 Sum_probs=87.8
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV------RL 533 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~------~~ 533 (573)
+|+..+.|+..+....++|++++|+-||++||+.+|.+..++++|+..|.++|++..|+.-|.++++++|.. ..
T Consensus 203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~ 282 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL 282 (895)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence 345568999999999999999999999999999999999999999999999999999999999999999942 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244 534 ICAEAQQERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 534 ~~~~~~~~~~~~~~~~al~~~~~~~~ 559 (573)
.+..++.....+.-+.|++.++.+++
T Consensus 283 i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 283 IRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 44446666666777999999999987
No 137
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.06 E-value=3.3e-05 Score=89.06 Aligned_cols=102 Identities=21% Similarity=0.181 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~ 539 (573)
|+....+...|..+.+.|++++|++.|+++++.+|+++..+.+++.++.+.++ .+|+..+++++++.|++. ....++.
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGW 845 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 34567788888888888999999999999999888888888888998888888 789999999988888874 5566778
Q ss_pred HHHHHHHHHHHHHHHhhccccCCC
Q 008244 540 QERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
++...+.+++|++.|+++++.+|.
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC
Confidence 888889999999999999998885
No 138
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.06 E-value=1.2e-05 Score=79.61 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~ 539 (573)
|++.......+..+...|+++++.+.++...+..|+++.+|..+|.+|+.+|++++|+..++++++.+|++. .+...+.
T Consensus 177 P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~ 256 (280)
T PF13429_consen 177 PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYAD 256 (280)
T ss_dssp TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccc
Confidence 366778888999999999999988888888888899999999999999999999999999999999999885 7778899
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 008244 540 QERCLDITRRQLKIFHMHWSW 560 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~~ 560 (573)
++...|..++|++.+.+.+..
T Consensus 257 ~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 257 ALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHT------------------
T ss_pred ccccccccccccccccccccc
Confidence 999999999999999988753
No 139
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.04 E-value=3.1e-05 Score=82.03 Aligned_cols=112 Identities=20% Similarity=0.097 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCcCc-HHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA--DCTKAINLDKKV-RLICAE 537 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~--~~~~al~l~p~~-~~~~~~ 537 (573)
+.-+..|+..|..+..+|++.+|.++|..|+.++|+++.....+|.|+++.|+..-|.. ....++++||.+ .++|..
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999887777 999999999998 499999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCcccC
Q 008244 538 AQQERCLDITRRQLKIFHMHWSWSPPIKEHPFLLI 572 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 572 (573)
|++.+.+|..++|..+|..+.++.+..+=.||--|
T Consensus 761 G~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs~i 795 (799)
T KOG4162|consen 761 GEVFKKLGDSKQAAECFQAALQLEESNPVLPFSNI 795 (799)
T ss_pred HHHHHHccchHHHHHHHHHHHhhccCCCccccccc
Confidence 99999999999999999999999998877777443
No 140
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.2e-05 Score=80.37 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
...-.+.++|-.+.+.++|++||.+|+++|.+.|.++.+|...|.||..+|+++.|+++|.++|-++|++
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 4455688999999999999999999999999999999999999999999999999999999999999998
No 141
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.01 E-value=5.6e-05 Score=76.49 Aligned_cols=97 Identities=19% Similarity=0.025 Sum_probs=80.3
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAE 537 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~ 537 (573)
+.|+++-.+.-.+.++++.++.++|++.+++++.++|+...++.|+|++|++.|++++|+...++.+.-+|++. .+..+
T Consensus 335 ~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~L 414 (484)
T COG4783 335 AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLL 414 (484)
T ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHH
Confidence 34477778888999999999999999999999999999999999999999999999999999999999999984 44444
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 008244 538 AQQERCLDITRRQLKIFH 555 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~~~ 555 (573)
++.+..++...++...+-
T Consensus 415 Aqay~~~g~~~~a~~A~A 432 (484)
T COG4783 415 AQAYAELGNRAEALLARA 432 (484)
T ss_pred HHHHHHhCchHHHHHHHH
Confidence 555555554444444433
No 142
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.99 E-value=1.3e-05 Score=59.92 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 502 SNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 502 ~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
+.+|..+++.|+|++|+..|+++++.+|++ .+++.++.++..++++++|+..|+...+.+|.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 468999999999999999999999999998 49999999999999999999999999998885
No 143
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.97 E-value=2.2e-05 Score=79.55 Aligned_cols=104 Identities=24% Similarity=0.220 Sum_probs=92.2
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcCc-HHH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES---GSFLQAEADCTKAINLDKKV-RLI 534 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l---~~~~~Al~~~~~al~l~p~~-~~~ 534 (573)
+-++.++.++++|+..+-.+....||..|.++++..|....+|.||+.++++. ++...|+.||..|+++||.. +++
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah 448 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH 448 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence 44678999999999999999999999999999999999999999999999985 47789999999999999997 799
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244 535 CAEAQQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 535 ~~~~~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
+++++++..++.+.+|+......-...|
T Consensus 449 ~~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 449 FRLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 9999999999999999986544333444
No 144
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.97 E-value=1.8e-05 Score=50.39 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 498 ~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
+.+|+++|.+|+++|+|++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567788888888888888888888888888764
No 145
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.94 E-value=7.7e-05 Score=67.67 Aligned_cols=70 Identities=21% Similarity=0.143 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-------HcCCHHHH-------HHHHHHHHHh
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYL-------ESGSFLQA-------EADCTKAINL 527 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~-------~l~~~~~A-------l~~~~~al~l 527 (573)
..+..+.++|..+...|++++|++.|+++++++|.....+.++|.+|. ++|++++| +..+++++.+
T Consensus 70 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~ 149 (168)
T CHL00033 70 DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIAL 149 (168)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Confidence 346789999999999999999999999999999999999999999999 78887754 5555567777
Q ss_pred CcCc
Q 008244 528 DKKV 531 (573)
Q Consensus 528 ~p~~ 531 (573)
+|++
T Consensus 150 ~p~~ 153 (168)
T CHL00033 150 APGN 153 (168)
T ss_pred Cccc
Confidence 8875
No 146
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.92 E-value=0.00015 Score=67.87 Aligned_cols=96 Identities=18% Similarity=0.007 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~ 539 (573)
|.+.+.|..+|..|.+.|++++|-..|.+++++.|+++.+++|+|+.|+-.|+++.|...+.++...-+.+ .....++.
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 37799999999999999999999999999999999999999999999999999999999999999888755 46666676
Q ss_pred HHHHHHHHHHHHHHHhh
Q 008244 540 QERCLDITRRQLKIFHM 556 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~ 556 (573)
+.-.++++++|-+.-.+
T Consensus 211 ~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 211 VVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHhhcCChHHHHhhccc
Confidence 66666777777665543
No 147
>PRK15331 chaperone protein SicA; Provisional
Probab=97.92 E-value=4.3e-05 Score=67.00 Aligned_cols=79 Identities=15% Similarity=0.001 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQE 541 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~ 541 (573)
.+..-+..+|.++..+++|++|+..|..+..++++++..++..|.||+.+++.++|+..|..+++ +|.+..+..+++..
T Consensus 69 ~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~ 147 (165)
T PRK15331 69 YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVY 147 (165)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHH
Confidence 34667899999999999999999999999999999999999999999999999999999999999 57766655555443
No 148
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.92 E-value=0.00012 Score=71.03 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=67.8
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
+.+.....++.+|..|+..|+|++|+..|.++++..|++ +.+++++|.+|..+|++++|...|+++++..|+..
T Consensus 175 ~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 175 DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 344557788999999999999999999999999998874 79999999999999999999999999999999975
No 149
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.91 E-value=0.00013 Score=69.22 Aligned_cols=96 Identities=14% Similarity=0.069 Sum_probs=82.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHH
Q 008244 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----RLICAEAQ 539 (573)
Q Consensus 467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----~~~~~~~~ 539 (573)
.++.+..+++.|+|.+|...|..-|+..|++ +.++|=+|.+++.+|+|++|...|..+++-.|+. .+++..+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7888889999999999999999999998886 5888889999999999999999999999988887 38888888
Q ss_pred HHHHHHHHHHHHHHHhhccccCC
Q 008244 540 QERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
+...++..++|-..|..-.+-=|
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCC
Confidence 88888888888888876655433
No 150
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.85 E-value=0.00031 Score=71.83 Aligned_cols=97 Identities=16% Similarity=0.027 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHH
Q 008244 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCL 544 (573)
Q Consensus 466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~ 544 (573)
...-++..+...++-.+|++.++++|+.+|++..++...+..+++.++++.|+..+++++++.|+. ..++.+++++..+
T Consensus 202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~ 281 (395)
T PF09295_consen 202 VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQL 281 (395)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 445578888888999999999999999999999999999999999999999999999999999997 5899999999999
Q ss_pred HHHHHHHHHHhhccccCC
Q 008244 545 DITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 545 ~~~~~al~~~~~~~~~~~ 562 (573)
+++++||..+...+.+..
T Consensus 282 ~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 282 GDFENALLALNSCPMLTY 299 (395)
T ss_pred CCHHHHHHHHhcCcCCCC
Confidence 999999999887765543
No 151
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.85 E-value=9.8e-05 Score=80.23 Aligned_cols=104 Identities=15% Similarity=0.211 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEA 538 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~-~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~ 538 (573)
|+++-.+.-++...|..++|..|+.+|.++|.++|.. +.....+|.|+.++++.+.|+..+.+|++|||.+. ++..++
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~ 240 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALG 240 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHH
Confidence 4789999999999999999999999999999999974 57778899999999999999999999999999873 666665
Q ss_pred HHHHHH---HHHHHHHHHHhhccccCCCC
Q 008244 539 QQERCL---DITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 539 ~~~~~~---~~~~~al~~~~~~~~~~~~~ 564 (573)
...... ..+..++..+..++..++..
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~n 269 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNEN 269 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCCC
Confidence 444333 78899999999999988853
No 152
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.83 E-value=0.00014 Score=64.51 Aligned_cols=85 Identities=15% Similarity=0.102 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHH----
Q 008244 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESG----------SFLQAEADCTKAINLDKKV-RLICAEAQQERCL---- 544 (573)
Q Consensus 480 ~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~----------~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~---- 544 (573)
|++|.+.|+.....+|.++..++|=|.+++.+. -+++|+.-|++||.++|+. .++++.|.++..+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 789999999999999999999999999998763 3578899999999999997 4777776554443
Q ss_pred -------HHHHHHHHHHhhccccCCCC
Q 008244 545 -------DITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 545 -------~~~~~al~~~~~~~~~~~~~ 564 (573)
+.+++|..+|+++...+|..
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45889999999999998864
No 153
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.81 E-value=8.8e-05 Score=83.16 Aligned_cols=96 Identities=16% Similarity=-0.012 Sum_probs=56.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHH
Q 008244 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDIT 547 (573)
Q Consensus 469 ~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~ 547 (573)
.....+...|++++|+..+++++..+|.....+...|.+|..+|+|++|++.|+++++++|++. .+..++..+...+..
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence 4445555556666666666666622223333333335577777777777777777777777763 444445555555677
Q ss_pred HHHHHHHhhccccCCCC
Q 008244 548 RRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 548 ~~al~~~~~~~~~~~~~ 564 (573)
++|++.+++..+.+|..
T Consensus 153 ~eAl~~l~~l~~~dp~~ 169 (822)
T PRK14574 153 GVVLKQATELAERDPTV 169 (822)
T ss_pred HHHHHHHHHhcccCcch
Confidence 77777777776666653
No 154
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.81 E-value=4.9e-05 Score=51.75 Aligned_cols=42 Identities=12% Similarity=-0.016 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAA 506 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~ 506 (573)
..+..+|..|.+.|++++|++.|+++|+.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356677778888888888888888888888888887777764
No 155
>PRK11906 transcriptional regulator; Provisional
Probab=97.78 E-value=0.00038 Score=70.96 Aligned_cols=83 Identities=10% Similarity=-0.062 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008244 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHW 558 (573)
Q Consensus 480 ~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~ 558 (573)
-.+|.+.-.+|++++|+|+.++..+|.++...++++.|+..|++|+.++|++. .++..+..+...++.++|.+.++++.
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34555555555666666666666666655555556666666666666666653 44445555555555556666665555
Q ss_pred ccCC
Q 008244 559 SWSP 562 (573)
Q Consensus 559 ~~~~ 562 (573)
+++|
T Consensus 400 rLsP 403 (458)
T PRK11906 400 QLEP 403 (458)
T ss_pred ccCc
Confidence 5555
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.77 E-value=0.00015 Score=77.44 Aligned_cols=88 Identities=17% Similarity=0.037 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH--HHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR--LICAEAQQE 541 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~--~~~~~~~~~ 541 (573)
+..+..+|..+..+|++++|...|++|++++| +..+|..+|.++...|++++|++.|++|+.++|.+. .++..+..+
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~~~~f~ 498 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWIENLVFQ 498 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHhcccc
Confidence 56677788888889999999999999999999 589999999999999999999999999999999984 444445666
Q ss_pred HHHHHHHHHHH
Q 008244 542 RCLDITRRQLK 552 (573)
Q Consensus 542 ~~~~~~~~al~ 552 (573)
..++...-++-
T Consensus 499 ~~~~~~~~~~~ 509 (517)
T PRK10153 499 TSVETVVPYLY 509 (517)
T ss_pred ccHHHHHHHHH
Confidence 66666664443
No 157
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.76 E-value=0.00021 Score=72.49 Aligned_cols=104 Identities=18% Similarity=0.117 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~ 540 (573)
.....++-.+..++..+++++|...++..|+..|+|+.++..++.++++.++.++|++.+++++.++|+.. ..+.+++.
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a 383 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA 383 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 55778889999999999999999999999999999999999999999999999999999999999999974 67778999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCC
Q 008244 541 ERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
+...+...++.+.++....-+|..+
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp 408 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDP 408 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCc
Confidence 9999999999999998887777543
No 158
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.0016 Score=62.76 Aligned_cols=102 Identities=8% Similarity=-0.023 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQER 542 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~ 542 (573)
.-...+.|..|++.|-+.+|.+.++.+|+..| .++.|..++.+|.+.++...|+..+.+.++.-|.+. .++..+++++
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH
Confidence 33446799999999999999999999999886 567778899999999999999999999999999985 7788899999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCC
Q 008244 543 CLDITRRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 543 ~~~~~~~al~~~~~~~~~~~~~~~ 566 (573)
.++..+++++.|+...+..|..-|
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvE 325 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVE 325 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccce
Confidence 999999999999999998886433
No 159
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.71 E-value=0.00011 Score=77.51 Aligned_cols=62 Identities=11% Similarity=0.069 Sum_probs=39.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 470 ~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
.|...+++++|+++.++++.+++++|-....|+++|.|.+++++++.|.++|.+++.++|++
T Consensus 491 ~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~ 552 (777)
T KOG1128|consen 491 LALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN 552 (777)
T ss_pred hccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc
Confidence 33344455666666666666666666666666666666666666666666666666666665
No 160
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.71 E-value=6.6e-05 Score=47.81 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 497 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~ 497 (573)
+..|.++|..++..++|++|+++|+++|+++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999974
No 161
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.71 E-value=0.00065 Score=57.27 Aligned_cols=97 Identities=13% Similarity=0.027 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHHHH
Q 008244 430 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAA 506 (573)
Q Consensus 430 ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~---~~~~~~n~a~ 506 (573)
+++.+..+....++..............-..+.....+.++|..+...|++++|+..+++++...|+ +..+...+++
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 4455555554433332222222212222234456788999999999999999999999999999888 7888899999
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 008244 507 AYLESGSFLQAEADCTKAIN 526 (573)
Q Consensus 507 ~~~~l~~~~~Al~~~~~al~ 526 (573)
++..+|++++|++-+-.++.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999988875
No 162
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.69 E-value=9.2e-05 Score=80.44 Aligned_cols=106 Identities=16% Similarity=0.098 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--HHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV--RLIC 535 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~--~~~~ 535 (573)
+.++..+..+++.+|-.|+|+.++..+..+|...-+. +..+|++|.+|..+|+|++|..+|.++++.+|++ ..++
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 3445555556666666666666666666665544332 3446666666666666666666666666666655 2445
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244 536 AEAQQERCLDITRRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 536 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 566 (573)
..++.+...+.++.+...|++-+..+|...|
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e 377 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYE 377 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHH
Confidence 5555555556666666666665555554433
No 163
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.68 E-value=0.00011 Score=46.70 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 497 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~ 497 (573)
++.+..+|..+++.|+|++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999985
No 164
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.67 E-value=0.0004 Score=59.66 Aligned_cols=71 Identities=20% Similarity=0.223 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCC---------------HHHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGS---------------FLQAEADCTK 523 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~---------------~~~Al~~~~~ 523 (573)
-..++...++..++++++|.+|+..|++-|+++|++ .-+++.+|++++++.+ ..+|+.+|++
T Consensus 45 ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~ 124 (142)
T PF13512_consen 45 YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQ 124 (142)
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHH
Confidence 446778899999999999999999999999999987 4889999999999988 8999999999
Q ss_pred HHHhCcCcH
Q 008244 524 AINLDKKVR 532 (573)
Q Consensus 524 al~l~p~~~ 532 (573)
.++.-|+..
T Consensus 125 lv~~yP~S~ 133 (142)
T PF13512_consen 125 LVRRYPNSE 133 (142)
T ss_pred HHHHCcCCh
Confidence 999999974
No 165
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.67 E-value=0.00016 Score=69.75 Aligned_cols=75 Identities=21% Similarity=0.203 Sum_probs=69.9
Q ss_pred ccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
.-.|.++..+.+++..|+++++|..|...++.||.++.....+|.+|+.+...+|+..||-+||+.+|+|.|++.
T Consensus 125 a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 125 AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 344566788899999999999999999999999999999999999999999999999999999999999999974
No 166
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.67 E-value=0.00015 Score=76.63 Aligned_cols=110 Identities=13% Similarity=0.081 Sum_probs=91.1
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA 538 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~ 538 (573)
+|-....|+..|....+.++++.|.++|++++.++|++..+|+|++.+|+++++-.+|...+++|++-+-++ +..-+.-
T Consensus 515 nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENym 594 (777)
T KOG1128|consen 515 NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYM 594 (777)
T ss_pred CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechh
Confidence 445577899999999999999999999999999999999999999999999999999999999999998443 2332333
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCc
Q 008244 539 QQERCLDITRRQLKIFHMHWSWSPPIKEHPF 569 (573)
Q Consensus 539 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 569 (573)
.+..-.+.++++++.|++-..++-..++..+
T Consensus 595 lvsvdvge~eda~~A~~rll~~~~~~~d~~v 625 (777)
T KOG1128|consen 595 LVSVDVGEFEDAIKAYHRLLDLRKKYKDDEV 625 (777)
T ss_pred hhhhhcccHHHHHHHHHHHHHhhhhcccchh
Confidence 3445558899999999988887766554433
No 167
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.65 E-value=6.4e-05 Score=58.40 Aligned_cols=65 Identities=18% Similarity=0.191 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cC-c----HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLD---KK-V----RLICAEAQQERCLDITRRQLKIFHMHWSW 560 (573)
Q Consensus 496 ~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~---p~-~----~~~~~~~~~~~~~~~~~~al~~~~~~~~~ 560 (573)
+-+.+|.|+|.+|..+|+|++|+..|++++++. ++ + ..+...+.++..++.+++|++.|+++.++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 346789999999999999999999999999873 22 2 37788899999999999999999988764
No 168
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.65 E-value=0.00056 Score=70.12 Aligned_cols=101 Identities=14% Similarity=0.075 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-------------------------------------HHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-------------------------------------TYYSNRA 505 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~-------------------------------------~~~~n~a 505 (573)
..+....++..++..|++++|++.++++++.+|++. .++.++|
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 121 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA 121 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH
Confidence 345566677777788888888888877777766654 3344667
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 506 AAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 506 ~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
.++..+|++++|++.++++++++|++. .+..++.++...++++++...+.+.....|.
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 788999999999999999999999984 7777889999999999999999998887764
No 169
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.00046 Score=64.24 Aligned_cols=70 Identities=19% Similarity=0.202 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCc
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~---~~~~Al~~~~~al~l~p~~ 531 (573)
...++|.++++.|+..|+|++|.-||++.+-++|.++.++..+|.+++-+| ++.-|.++|.++++++|.+
T Consensus 152 ~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 152 NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 458899999999999999999999999999999999999999999999876 6889999999999999965
No 170
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.64 E-value=8.1e-05 Score=71.36 Aligned_cols=103 Identities=14% Similarity=0.010 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Q 008244 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQER 542 (573)
Q Consensus 467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~---~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~ 542 (573)
+.+.|...+-.++|+-++.+|.+|+....+ .+..|+|+|.+....|++.-|-++|+-||.-||++ .++..++....
T Consensus 361 f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~ 440 (478)
T KOG1129|consen 361 FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAA 440 (478)
T ss_pred HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHh
Confidence 444555555555555555555555554321 24555555555555666666666666666666655 35555555555
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCc
Q 008244 543 CLDITRRQLKIFHMHWSWSPPIKEHPF 569 (573)
Q Consensus 543 ~~~~~~~al~~~~~~~~~~~~~~~~~~ 569 (573)
..+.++.|-..+..+.+..|.-.|..+
T Consensus 441 r~G~i~~Arsll~~A~s~~P~m~E~~~ 467 (478)
T KOG1129|consen 441 RSGDILGARSLLNAAKSVMPDMAEVTT 467 (478)
T ss_pred hcCchHHHHHHHHHhhhhCcccccccc
Confidence 556677777777777777776555443
No 171
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.0001 Score=73.41 Aligned_cols=102 Identities=19% Similarity=0.152 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~ 539 (573)
.-++.++.++||..|..|++++|.+.|.+||.-+.....+++|.|..+.++|+.++|+.+|-+.-.+=-++ ..++..+.
T Consensus 487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qian 566 (840)
T KOG2003|consen 487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIAN 566 (840)
T ss_pred ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34567788999999999999999999999999998889999999999999999999999998865554444 47777888
Q ss_pred HHHHHHHHHHHHHHHhhccccCC
Q 008244 540 QERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
+++.++.-.+|++.|.++.++-|
T Consensus 567 iye~led~aqaie~~~q~~slip 589 (840)
T KOG2003|consen 567 IYELLEDPAQAIELLMQANSLIP 589 (840)
T ss_pred HHHHhhCHHHHHHHHHHhcccCC
Confidence 88888888888888887777655
No 172
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.62 E-value=0.00044 Score=72.09 Aligned_cols=85 Identities=12% Similarity=0.051 Sum_probs=80.6
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 008244 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFH 555 (573)
Q Consensus 476 ~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~al~~~~ 555 (573)
..++++++++..++.++..|+++..+..+|..+++.++|++|.++|+++++++|++..+...+.++..++..++|.+.|.
T Consensus 306 ~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55999999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred hcccc
Q 008244 556 MHWSW 560 (573)
Q Consensus 556 ~~~~~ 560 (573)
+...+
T Consensus 386 ~~l~~ 390 (398)
T PRK10747 386 DGLML 390 (398)
T ss_pred HHHhh
Confidence 88764
No 173
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.61 E-value=0.00095 Score=64.26 Aligned_cols=108 Identities=10% Similarity=0.026 Sum_probs=93.1
Q ss_pred CCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH--H
Q 008244 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR--L 533 (573)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~--~ 533 (573)
....+-+.++-+.+++..+....+++.|+....+|++.+|++..+-.-+|.+++..|+|+.|++.++.+++.||++. .
T Consensus 172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 44455667888999999999999999999999999999999999999999999999999999999999999999983 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 534 ICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 534 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
+-.+.+++..+++.++++..+......++.
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 666778888889988888888877766553
No 174
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.60 E-value=0.00059 Score=71.79 Aligned_cols=109 Identities=12% Similarity=0.093 Sum_probs=93.1
Q ss_pred ccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Q 008244 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG--------NNATYYSNRAAAYLESGSFLQAEADCTKAINLD- 528 (573)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p--------~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~- 528 (573)
..+|.-+..+.+++..|++.|+|++|..+|++|+++-. .-+..+.+.+..+..++++++|+..+++++++-
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999998742 336899999999999999999999999998864
Q ss_pred ----cCc----HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244 529 ----KKV----RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 529 ----p~~----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 566 (573)
+++ +.+..++..+..++.+++|.+.|+.+.+......+
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~ 402 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG 402 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc
Confidence 233 46777899999999999999999999987754333
No 175
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.58 E-value=0.00072 Score=71.15 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=82.8
Q ss_pred ccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008244 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529 (573)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~--------~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p 529 (573)
...+.-.......|..|..+++|.+|+..|++|+.+ +|.-+..+.|+|..|.+.|+|++|..+|++|+++--
T Consensus 235 ~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~ 314 (508)
T KOG1840|consen 235 LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYE 314 (508)
T ss_pred ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 445566677778999999999999999999999976 344579999999999999999999999999998753
Q ss_pred C-----c----HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244 530 K-----V----RLICAEAQQERCLDITRRQLKIFHMHWSW 560 (573)
Q Consensus 530 ~-----~----~~~~~~~~~~~~~~~~~~al~~~~~~~~~ 560 (573)
. . ..+...+.+...++.++++.+.|..+.++
T Consensus 315 ~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 315 KLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred HhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3 1 24555566777778888888877766653
No 176
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.56 E-value=0.0017 Score=62.63 Aligned_cols=107 Identities=9% Similarity=0.046 Sum_probs=86.1
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAE 537 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~-~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~ 537 (573)
.+|+.+.+-..+|.++..+|+|++|++.+..+++.||+. +.....+..||..+|+.++.+....++.+.++........
T Consensus 209 a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l 288 (389)
T COG2956 209 ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELML 288 (389)
T ss_pred hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHH
Confidence 355555566778999999999999999999999999986 5778888999999999999999999999999888766666
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244 538 AQQERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
++....++..+.|....-.-....|..+
T Consensus 289 ~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 289 ADLIELQEGIDAAQAYLTRQLRRKPTMR 316 (389)
T ss_pred HHHHHHhhChHHHHHHHHHHHhhCCcHH
Confidence 6666666777777776666666666543
No 177
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.55 E-value=0.0018 Score=68.81 Aligned_cols=92 Identities=15% Similarity=0.070 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH-HHHHH
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEA-QQERC 543 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~-~~~~~ 543 (573)
-.++-++..+-..|+|++|++..++||+..|..+++|..+|.+|-+.|++++|.+..+.|-++|+.++....++ +....
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999986554443 33333
Q ss_pred HHHHHHHHHHHhh
Q 008244 544 LDITRRQLKIFHM 556 (573)
Q Consensus 544 ~~~~~~al~~~~~ 556 (573)
-+.+++|.+.+..
T Consensus 275 a~~~e~A~~~~~~ 287 (517)
T PF12569_consen 275 AGRIEEAEKTASL 287 (517)
T ss_pred CCCHHHHHHHHHh
Confidence 3677777666553
No 178
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.50 E-value=0.00019 Score=45.60 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 499 ~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
.+|+++|.+|.++|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 567888888888888888888888888888753
No 179
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.49 E-value=0.00026 Score=54.09 Aligned_cols=61 Identities=20% Similarity=0.133 Sum_probs=55.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244 505 AAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 505 a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
..+|++.++|++|++.++++++++|++. .++.+|.++..++++.+|.+.|+..++..|...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 5688999999999999999999999985 888899999999999999999999999998543
No 180
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.48 E-value=0.00065 Score=71.14 Aligned_cols=87 Identities=9% Similarity=0.003 Sum_probs=75.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCcCcHHHHHHHHHHHHHHHHHH
Q 008244 474 AYKDKQWLKAISFYTEAIKLNGNNA--TYYSNRAAAYLESGSFLQAEADCT--KAINLDKKVRLICAEAQQERCLDITRR 549 (573)
Q Consensus 474 ~~~~~~~~~Ai~~y~~ai~~~p~~~--~~~~n~a~~~~~l~~~~~Al~~~~--~al~l~p~~~~~~~~~~~~~~~~~~~~ 549 (573)
.++.++.+++++.++++++..|+++ .++..+|.+++++|+|++|.++++ ++++.+|+...+...++++..++..++
T Consensus 309 ~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~ 388 (409)
T TIGR00540 309 RLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAE 388 (409)
T ss_pred hcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHH
Confidence 3445788899999999999999999 888899999999999999999999 688899998767788999999999999
Q ss_pred HHHHHhhcccc
Q 008244 550 QLKIFHMHWSW 560 (573)
Q Consensus 550 al~~~~~~~~~ 560 (573)
|.+.|.+....
T Consensus 389 A~~~~~~~l~~ 399 (409)
T TIGR00540 389 AAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHHH
Confidence 99999887553
No 181
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.44 E-value=0.0028 Score=55.82 Aligned_cols=95 Identities=19% Similarity=0.001 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----RLI 534 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----~~~ 534 (573)
+.+...+......+..+++..+...+++.++-.|+. ..+++.+|.+++..|++++|+..|+++++..|+. .+.
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 446667777777788999999999999999999998 6888999999999999999999999999988664 377
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 008244 535 CAEAQQERCLDITRRQLKIFHM 556 (573)
Q Consensus 535 ~~~~~~~~~~~~~~~al~~~~~ 556 (573)
++++.++...+.+++|+..++.
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHh
Confidence 8889999999999999999976
No 182
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.44 E-value=0.00018 Score=71.03 Aligned_cols=98 Identities=15% Similarity=0.124 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--c---
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--V--- 531 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~------~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~--~--- 531 (573)
.-..+-++||.||-.|+|++||..-+.-|++... .-.+|.|+|+||..+|+|+.|+++|++.+.|.-. +
T Consensus 194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v 273 (639)
T KOG1130|consen 194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV 273 (639)
T ss_pred hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH
Confidence 3456778999999999999999998887777543 2478999999999999999999999988766432 1
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244 532 --RLICAEAQQERCLDITRRQLKIFHMHWSW 560 (573)
Q Consensus 532 --~~~~~~~~~~~~~~~~~~al~~~~~~~~~ 560 (573)
...|.++..+..+..+++|+.++.+++.+
T Consensus 274 EAQscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 274 EAQSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777778888888877776654
No 183
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.43 E-value=0.0036 Score=51.23 Aligned_cols=92 Identities=14% Similarity=0.166 Sum_probs=73.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------C
Q 008244 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGN------------NATYYSNRAAAYLESGSFLQAEADCTKAINL-------D 528 (573)
Q Consensus 468 ~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~------------~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l-------~ 528 (573)
...|...++.|-|++|...|++|.++.-. ++.+|.-++.++..+|+|++++...+++|.. +
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 44566778889999999999999987532 3578888999999999999999999999864 3
Q ss_pred cCc-----HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244 529 KKV-----RLICAEAQQERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 529 p~~-----~~~~~~~~~~~~~~~~~~al~~~~~~~~ 559 (573)
.+. .+.+.++.....+++.++|++.|.++-.
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 332 4778899999999999999999987654
No 184
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0031 Score=58.40 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=67.4
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
+....-.+.|....++..++|-++++.++..|..+|.+..+|+.||.++....+..+|..|+.++|+++|...
T Consensus 226 dk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 226 DKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 3344556789999999999999999999999999999999999999999999999999999999999999973
No 185
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.41 E-value=0.0018 Score=72.39 Aligned_cols=96 Identities=10% Similarity=0.015 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------------------ATYYSNRAAAYLESGSFLQAEADC 521 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~-------------------~~~~~n~a~~~~~l~~~~~Al~~~ 521 (573)
|+....++-+|..+++.+++.++... +++..-+.+ -.+++.+|.||-++|++++|...|
T Consensus 62 P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~y 139 (906)
T PRK14720 62 KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVW 139 (906)
T ss_pred CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHH
Confidence 46677777788877777777666554 444444444 489999999999999999999999
Q ss_pred HHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244 522 TKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 522 ~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~ 559 (573)
+++|++||++. ++.+.|..+... ..++|.+.+.++..
T Consensus 140 er~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 140 ERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 99999999984 555555555555 66677666666554
No 186
>PRK11906 transcriptional regulator; Provisional
Probab=97.40 E-value=0.0011 Score=67.82 Aligned_cols=98 Identities=13% Similarity=0.086 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~ 539 (573)
+.++.++...|..+.-.++++.|+..+++|+.++|+.+.+|+.+|....-.|+.++|++..++|++++|.-. +...+.-
T Consensus 335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~ 414 (458)
T PRK11906 335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKEC 414 (458)
T ss_pred CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999999863 3222222
Q ss_pred H-HHHHHHHHHHHHHHhhcc
Q 008244 540 Q-ERCLDITRRQLKIFHMHW 558 (573)
Q Consensus 540 ~-~~~~~~~~~al~~~~~~~ 558 (573)
+ ..+....+++.+.|.+..
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 415 VDMYVPNPLKNNIKLYYKET 434 (458)
T ss_pred HHHHcCCchhhhHHHHhhcc
Confidence 2 344467778888776544
No 187
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.38 E-value=0.0004 Score=47.18 Aligned_cols=41 Identities=27% Similarity=0.131 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHH
Q 008244 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEA 538 (573)
Q Consensus 498 ~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~ 538 (573)
+.+|..+|.+|..+|++++|++.|+++++.+|++. +...++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 35789999999999999999999999999999995 444444
No 188
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0041 Score=61.86 Aligned_cols=84 Identities=14% Similarity=0.044 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244 481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFHMHWSW 560 (573)
Q Consensus 481 ~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ 560 (573)
++|...|++++.++|....+-..+|..+..-|++++++...++.|...|+...+..++++..+.+.+++++..|..++.+
T Consensus 421 EKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 421 EKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 67888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 008244 561 SPPI 564 (573)
Q Consensus 561 ~~~~ 564 (573)
+|..
T Consensus 501 dP~~ 504 (564)
T KOG1174|consen 501 DPKS 504 (564)
T ss_pred Cccc
Confidence 9964
No 189
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.34 E-value=0.0005 Score=74.95 Aligned_cols=95 Identities=19% Similarity=0.124 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQER 542 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~ 542 (573)
...|.++|-.+.+.+++.+|+..++.|+..+|++..+|..+|.+|...|+|..|++.|++|..++|.+. ..|..+..+.
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC 641 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence 445677999999999999999999999999999999999999999999999999999999999999984 6666677777
Q ss_pred HHHHHHHHHHHHhhcc
Q 008244 543 CLDITRRQLKIFHMHW 558 (573)
Q Consensus 543 ~~~~~~~al~~~~~~~ 558 (573)
-++.+++++..+.+-.
T Consensus 642 d~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 642 DNGKYKEALDALGLII 657 (1238)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 7788888877766543
No 190
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.31 E-value=0.0023 Score=64.05 Aligned_cols=102 Identities=15% Similarity=-0.025 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~ 540 (573)
.-.+++++.|..+-.+|+.++|+++|-+.-.+--+++..++.++.+|..+.+..+|++-+.++..+-|+++ .+-.++.+
T Consensus 522 sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dl 601 (840)
T KOG2003|consen 522 SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADL 601 (840)
T ss_pred HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 55778888888888888888888888776666667888888888888888888888888888888888875 44455666
Q ss_pred HHHHHHHHHHHHHHhhccccCCC
Q 008244 541 ERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
+...+...+|++++...+.+-|.
T Consensus 602 ydqegdksqafq~~ydsyryfp~ 624 (840)
T KOG2003|consen 602 YDQEGDKSQAFQCHYDSYRYFPC 624 (840)
T ss_pred hhcccchhhhhhhhhhcccccCc
Confidence 66666666666666666665554
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00091 Score=64.33 Aligned_cols=85 Identities=14% Similarity=0.124 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHH---HHHHHHHHHHh
Q 008244 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCL---DITRRQLKIFH 555 (573)
Q Consensus 480 ~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~---~~~~~al~~~~ 555 (573)
.++.+...+..|..+|+|..-|.-+|.+|+.++++..|+..|.+|+++.|++. .+...++++.+. ....++-+.|.
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 45556667788999999999999999999999999999999999999999995 555566666666 55778888889
Q ss_pred hccccCCCC
Q 008244 556 MHWSWSPPI 564 (573)
Q Consensus 556 ~~~~~~~~~ 564 (573)
++..++|..
T Consensus 218 ~al~~D~~~ 226 (287)
T COG4235 218 QALALDPAN 226 (287)
T ss_pred HHHhcCCcc
Confidence 999888854
No 192
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.30 E-value=0.0063 Score=58.56 Aligned_cols=73 Identities=15% Similarity=0.018 Sum_probs=62.5
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCC------------------HHHH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGS------------------FLQA 517 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~------------------~~~A 517 (573)
..+........+|..+++.++|++|+..|++.|+..|++ +.+++.+|.|++.+++ -.+|
T Consensus 64 ~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A 143 (243)
T PRK10866 64 FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAA 143 (243)
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHH
Confidence 334556678899999999999999999999999999886 5889999999866651 2579
Q ss_pred HHHHHHHHHhCcCc
Q 008244 518 EADCTKAINLDKKV 531 (573)
Q Consensus 518 l~~~~~al~l~p~~ 531 (573)
++.+++.++.-|+.
T Consensus 144 ~~~~~~li~~yP~S 157 (243)
T PRK10866 144 FRDFSKLVRGYPNS 157 (243)
T ss_pred HHHHHHHHHHCcCC
Confidence 99999999999996
No 193
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.29 E-value=0.0045 Score=64.83 Aligned_cols=91 Identities=13% Similarity=0.068 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHH
Q 008244 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLD 545 (573)
Q Consensus 468 ~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~-~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~ 545 (573)
.-.+..+.++|++++|.+.|.++.+..|++. .+...++..++..|++++|++.+++.++.+|++. .+...+.++...+
T Consensus 122 llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~ 201 (409)
T TIGR00540 122 IKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSG 201 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 3444444555555555555555555444443 2333345555555555555555555555555543 3334444444445
Q ss_pred HHHHHHHHHhhcc
Q 008244 546 ITRRQLKIFHMHW 558 (573)
Q Consensus 546 ~~~~al~~~~~~~ 558 (573)
+++++++.+....
T Consensus 202 d~~~a~~~l~~l~ 214 (409)
T TIGR00540 202 AWQALDDIIDNMA 214 (409)
T ss_pred hHHHHHHHHHHHH
Confidence 5554444444333
No 194
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.28 E-value=0.0051 Score=58.01 Aligned_cols=97 Identities=14% Similarity=0.068 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----RLI 534 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----~~~ 534 (573)
..+..|.+.|...++.|+|++|+..|+......|.. ..+...++.++++-++|++|+...++=+++.|++ .++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 358899999999999999999999999999998875 5889999999999999999999999999999987 366
Q ss_pred HHHHHHHHHH--------HHHHHHHHHHhhcc
Q 008244 535 CAEAQQERCL--------DITRRQLKIFHMHW 558 (573)
Q Consensus 535 ~~~~~~~~~~--------~~~~~al~~~~~~~ 558 (573)
|.++...... ...+++...|..-.
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i 143 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELV 143 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHH
Confidence 7666553322 34455555554433
No 195
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.27 E-value=0.0067 Score=63.23 Aligned_cols=95 Identities=13% Similarity=-0.012 Sum_probs=72.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHH
Q 008244 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY-SNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCL 544 (573)
Q Consensus 467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~-~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~ 544 (573)
+...+....+.|++++|.+.|.++.+.+|++..+. ...+..+...|++++|++.+++.++.+|++. .+...++++...
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT 200 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 44445555888888888888888888888875433 3448888888888888888888888888884 666667777777
Q ss_pred HHHHHHHHHHhhccccC
Q 008244 545 DITRRQLKIFHMHWSWS 561 (573)
Q Consensus 545 ~~~~~al~~~~~~~~~~ 561 (573)
++++++++.+...-+..
T Consensus 201 gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 201 GAWSSLLDILPSMAKAH 217 (398)
T ss_pred HhHHHHHHHHHHHHHcC
Confidence 88888887666555443
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.26 E-value=0.0044 Score=55.11 Aligned_cols=99 Identities=13% Similarity=0.101 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIK-LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---RLICAEAQ 539 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~-~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---~~~~~~~~ 539 (573)
.+-...+++.+.+.|+|.||...|.+++. +--.++..+..++++.+..+++.+|..-.++..+.+|.. ......+.
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 45567899999999999999999999985 566788889999999999999999999999999998886 25555667
Q ss_pred HHHHHHHHHHHHHHHhhccccCC
Q 008244 540 QERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
.+..++.++++-..|+.+.+.-|
T Consensus 169 ~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 169 TLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred HHHhcCCchhHHHHHHHHHHhCC
Confidence 77777888888888887776555
No 197
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.19 E-value=0.0052 Score=57.54 Aligned_cols=71 Identities=17% Similarity=0.100 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGS-----------FLQAEADCTKAIN 526 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~-----------~~~Al~~~~~al~ 526 (573)
+-..+..+..|..+++.++|.+|+..|++-|+..|++ ..+++.+|.|++++.+ ..+|+..|++.++
T Consensus 39 ~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~ 118 (203)
T PF13525_consen 39 PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK 118 (203)
T ss_dssp TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence 4557788999999999999999999999999999986 4799999999887643 4589999999999
Q ss_pred hCcCc
Q 008244 527 LDKKV 531 (573)
Q Consensus 527 l~p~~ 531 (573)
.-|+.
T Consensus 119 ~yP~S 123 (203)
T PF13525_consen 119 RYPNS 123 (203)
T ss_dssp H-TTS
T ss_pred HCcCc
Confidence 99996
No 198
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.17 E-value=0.0033 Score=62.15 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----
Q 008244 462 QSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGN--N----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---- 530 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~-~~~~~Ai~~y~~ai~~~p~--~----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~---- 530 (573)
..+..+.+.|..|.+. +++++|++.|++|+++-.. . ...+.+.|.++.++++|++|++.|+++.+..-+
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 4477888999999888 9999999999999987432 2 478889999999999999999999999885422
Q ss_pred -c--H-HHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 531 -V--R-LICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 531 -~--~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
+ + .++....++.+.+..-.|.+.|+..-...|..
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 1 2 33445567777788888888888887777743
No 199
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.14 E-value=0.0054 Score=58.37 Aligned_cols=113 Identities=13% Similarity=0.068 Sum_probs=83.7
Q ss_pred CCCCceeEEEeccCCcHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008244 412 DKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI 491 (573)
Q Consensus 412 ~glPvGlq~~~~~~~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai 491 (573)
++.|+. ....+++.|..+-..-.-......-..+...-++.+..+.+++=+|+.+|.+|+|++|...|..++
T Consensus 134 ~~~p~~--------~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~ 205 (262)
T COG1729 134 DGAPVS--------PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVV 205 (262)
T ss_pred CCCCCC--------chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHH
Confidence 566666 333366655554432221111222223333444555667788889999999999999999999999
Q ss_pred HhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 492 KLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 492 ~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
+-.|++ +++++.+|.|...+++.++|...++++++..|+..
T Consensus 206 k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 206 KDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 988765 69999999999999999999999999999999985
No 200
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.13 E-value=0.00095 Score=67.85 Aligned_cols=74 Identities=20% Similarity=0.137 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLI 534 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~ 534 (573)
|..+..+-+++..+.+.++|..|+.-..+||+.+|....+|+.+|.+++++++|.+|+.++++...+.|+.+..
T Consensus 35 pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 35 PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHH
Confidence 35677777888999999999999999999999999999999999999999999999999999999999998633
No 201
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.13 E-value=0.0056 Score=51.12 Aligned_cols=71 Identities=20% Similarity=0.194 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
|+.+..|++++..+.-+|+-++|++.+++|+++.-.. ..+|..||..|..+|+-+.|..||+.|-++-..+
T Consensus 74 P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 74 PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 4789999999999999999999999999999997543 5889999999999999999999999999998776
No 202
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0031 Score=62.68 Aligned_cols=67 Identities=16% Similarity=0.109 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~ 530 (573)
+..|+-.+..++..++|+.|+..-.++|+.+|++..+|...|..+..+++.++|+-.|+.|..+.|.
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~ 366 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY 366 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence 3344444444555555555555555555555555555555555555555555555555555555543
No 203
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.10 E-value=0.0022 Score=63.46 Aligned_cols=97 Identities=23% Similarity=0.234 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--C----CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCc---
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG--N----NATYYSNRAAAYLES-GSFLQAEADCTKAINLDKKV--- 531 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p--~----~~~~~~n~a~~~~~l-~~~~~Al~~~~~al~l~p~~--- 531 (573)
..+..+.+.++ .++..++++|+++|++|+++.- . -+.++.++|.+|... +++++|++.|++|+++--..
T Consensus 73 ~Aa~~~~~Aa~-~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~ 151 (282)
T PF14938_consen 73 EAAKAYEEAAN-CYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP 151 (282)
T ss_dssp HHHHHHHHHHH-HHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHH-HHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 33445555444 4566699999999999998732 2 268999999999998 99999999999999974221
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244 532 ----RLICAEAQQERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 532 ----~~~~~~~~~~~~~~~~~~al~~~~~~~~ 559 (573)
..+...+.+...++.+++|++.|+....
T Consensus 152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3555667888888999999999997654
No 204
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.09 E-value=0.004 Score=66.59 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=67.8
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAIS--FYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~--~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
-+|+.......+|..+.+.|+-.-|.. ....+++++|.++++|+++|.++.++|+.++|.++|+.|++|++.++
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 356778888899999999998888888 99999999999999999999999999999999999999999998763
No 205
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.08 E-value=0.0014 Score=67.16 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~a 524 (573)
|..+..+..++..+.++++|+.|++..+++++..|++...|+.++.||.++|+|++|+..++-+
T Consensus 231 p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 231 PQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 3458899999999999999999999999999999999999999999999999999999777644
No 206
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.07 E-value=0.0036 Score=65.61 Aligned_cols=89 Identities=17% Similarity=0.160 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHH
Q 008244 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLD 545 (573)
Q Consensus 467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~ 545 (573)
|.-.|..+...++|++||+||+.|+.++|+|-.+|..++....++++|+-....=.+.++++|... .+...+..+...+
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g 157 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLG 157 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 444444444455555555555555555555555555555555555555555555555555555543 2222333333344
Q ss_pred HHHHHHHHHh
Q 008244 546 ITRRQLKIFH 555 (573)
Q Consensus 546 ~~~~al~~~~ 555 (573)
.+..|+...+
T Consensus 158 ~y~~A~~il~ 167 (700)
T KOG1156|consen 158 EYKMALEILE 167 (700)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 207
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.07 E-value=0.0051 Score=61.26 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------------------ATYYSNRAAAYLESGSFLQAEADCTKA 524 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------------------~~~~~n~a~~~~~l~~~~~Al~~~~~a 524 (573)
..+...+.+...|++++|..|+..|..+|++..+- ...-..+..||+++++.+-|+....+.
T Consensus 175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrs 254 (569)
T PF15015_consen 175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRS 254 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence 34444556677788888888888888888764321 234456889999999999999999999
Q ss_pred HHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHh
Q 008244 525 INLDKKV-RLICAEAQQERCLDITRRQLKIFH 555 (573)
Q Consensus 525 l~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~ 555 (573)
+.+||.+ .-+++++.+.+++++|.+|.+.+-
T Consensus 255 I~lnP~~frnHLrqAavfR~LeRy~eAarSam 286 (569)
T PF15015_consen 255 INLNPSYFRNHLRQAAVFRRLERYSEAARSAM 286 (569)
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 488899999999999999988653
No 208
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.03 E-value=0.0017 Score=48.71 Aligned_cols=57 Identities=14% Similarity=-0.014 Sum_probs=51.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 508 YLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 508 ~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
+++.|+|++|++.|+++++.+|++. ..+.++.++...+++++|.+.+++....+|..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 4678999999999999999999984 88889999999999999999999999988864
No 209
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.02 E-value=0.0034 Score=68.76 Aligned_cols=97 Identities=14% Similarity=0.048 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcH-HHHHHHHHHHH
Q 008244 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKVR-LICAEAQQERC 543 (573)
Q Consensus 466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~-~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~ 543 (573)
.....+....+.++|++||+...++++.+|+|..++.-+|.++..+++ .++|-+.|..|.+++|++- +...++..++.
T Consensus 4 ~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~ 83 (1238)
T KOG1127|consen 4 TALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYER 83 (1238)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHc
Confidence 345567777889999999999999999999999999999999999998 9999999999999999983 44444433333
Q ss_pred ---HHHHHHHHHHHhhccccCC
Q 008244 544 ---LDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 544 ---~~~~~~al~~~~~~~~~~~ 562 (573)
...+.++...|.+.....+
T Consensus 84 ~~dIl~ld~~~~~yq~~~l~le 105 (1238)
T KOG1127|consen 84 YNDILDLDRAAKCYQRAVLILE 105 (1238)
T ss_pred cchhhhhhHhHHHHHHHHHhhh
Confidence 3455555555555544433
No 210
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.01 E-value=0.0048 Score=43.43 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 499 ~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
+.++.+|..++++|+|++|.++++.+|+++|+|.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 4678899999999999999999999999999996
No 211
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.01 E-value=0.0085 Score=63.82 Aligned_cols=76 Identities=14% Similarity=0.045 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEA 538 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~ 538 (573)
..+.+.-+..++.+.|+|++|++.+++....-.+....+-.+|.+|+++|++++|...|+..|+.||++..++...
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L 78 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGL 78 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 3555666778889999999999999999999999999999999999999999999999999999999997555543
No 212
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.00 E-value=0.002 Score=58.57 Aligned_cols=80 Identities=15% Similarity=0.076 Sum_probs=73.1
Q ss_pred CCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
+++...-+|+.+..++-+|.-+...|+|+.|.+.|+..++++|.+--++.|||..++--|+|+-|.+++.+-.+-||+++
T Consensus 88 ftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 88 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred hhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 34444456788999999999999999999999999999999999999999999999999999999999999999999973
No 213
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.96 E-value=0.0033 Score=70.32 Aligned_cols=102 Identities=7% Similarity=-0.079 Sum_probs=89.6
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---------
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--------- 530 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~--------- 530 (573)
++.+..++.++...+..++++++|++.++.+++..|+...+|+..|..|+..+++.++... .++.+-+.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 4577999999999999999999999999999999999999999999999999988777665 55544332
Q ss_pred ----------c-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 531 ----------V-RLICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 531 ----------~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
+ .+++.+|.++..++..+++...|++...++|.
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~ 148 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD 148 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc
Confidence 2 48888999999999999999999999999974
No 214
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.90 E-value=0.021 Score=50.16 Aligned_cols=93 Identities=18% Similarity=0.144 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----------------------ATYYSNRAAAYLESGSFLQAEADC 521 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~----------------------~~~~~n~a~~~~~l~~~~~Al~~~ 521 (573)
.+.+...+......++.++++..+.+++.+-..+ ..+...++..+...|++++|+..+
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 4445556667777788888888888888763211 256666677788889999999999
Q ss_pred HHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 008244 522 TKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHM 556 (573)
Q Consensus 522 ~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~ 556 (573)
++++.++|-+. .+..+.+++...++..+|++.|+.
T Consensus 86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 99999999873 444555666666666666666554
No 215
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.90 E-value=0.0021 Score=40.66 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 497 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~ 497 (573)
++.+..+|..+.+.|++++|++.|+++++++|++
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3578899999999999999999999999999953
No 216
>PRK10941 hypothetical protein; Provisional
Probab=96.80 E-value=0.017 Score=56.15 Aligned_cols=68 Identities=10% Similarity=0.041 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
..+.++-..+.+.++|+.|+.+.+..+.++|+++.-+-.||.+|.+++.+..|+.|++.-++..|+..
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 34567788899999999999999999999999999999999999999999999999999999999985
No 217
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.76 E-value=0.012 Score=61.84 Aligned_cols=101 Identities=12% Similarity=-0.055 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQER 542 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~ 542 (573)
...|...++...-+++.++|++.++++|+..|+.+.+|..+|+++..+++.+.|...|...+++.|+. .....++++.+
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 45577777788888999999999999999999999999999999999999999999999999999998 57777788888
Q ss_pred HHHHHHHHHHHHhhccccCCCC
Q 008244 543 CLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 543 ~~~~~~~al~~~~~~~~~~~~~ 564 (573)
..+..-+|-..++++-..||..
T Consensus 731 k~~~~~rAR~ildrarlkNPk~ 752 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNPKN 752 (913)
T ss_pred HhcchhhHHHHHHHHHhcCCCc
Confidence 8889999999999998888853
No 218
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.0039 Score=60.71 Aligned_cols=107 Identities=13% Similarity=0.096 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------HhC
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI--------------NLD 528 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al--------------~l~ 528 (573)
..+.| .|-.+|..|+|++|+..|+.+.+.+.-+.+++.|+|.|++-+|.|.+|.....+|- +++
T Consensus 58 ~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 58 SLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 34444 67889999999999999999999887889999999999999999999988766542 222
Q ss_pred cCc-------------HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCccc
Q 008244 529 KKV-------------RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKEHPFLL 571 (573)
Q Consensus 529 p~~-------------~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~ 571 (573)
-.- .-...++..+...-.|++|+..|.+-+.-+|.+-..-+||
T Consensus 136 dEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ 191 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYM 191 (557)
T ss_pred cHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHH
Confidence 111 0122345556666789999999998888887654444443
No 219
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.75 E-value=0.0073 Score=63.43 Aligned_cols=106 Identities=8% Similarity=-0.033 Sum_probs=92.2
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAE 537 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~ 537 (573)
..|++.+.+--.|..+...|+-++|.++...++..++.+..+|.-+|..+..-++|++|+++|+.|++++|+|. .+..+
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl 115 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL 115 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 66777888888999999999999999999999999999999999999999999999999999999999999995 55556
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 538 AQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
+..+..++.++-.+..-.+.+++.|..
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLRPSQ 142 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence 666667788887777777777777753
No 220
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.73 E-value=0.0057 Score=60.47 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHH
Q 008244 479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCL 544 (573)
Q Consensus 479 ~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~ 544 (573)
++++|.-.|++..+..+.++..++.++.|++.+|+|++|.+.+++|++.+|++. .+..+..+...+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~ 248 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHL 248 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Confidence 466666666665555455556666666666666666666666666666666553 444444443333
No 221
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.70 E-value=0.0034 Score=40.45 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008244 500 YYSNRAAAYLESGSFLQAEADCTKAINLD 528 (573)
Q Consensus 500 ~~~n~a~~~~~l~~~~~Al~~~~~al~l~ 528 (573)
+|.++|.+|.++|+|++|++.|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47889999999999999999999976554
No 222
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.67 E-value=0.0025 Score=39.07 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (573)
Q Consensus 499 ~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~ 530 (573)
.+|.++|.+|..++++++|+..++++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45777888888888888888888888877775
No 223
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.66 E-value=0.0034 Score=39.25 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 500 ~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
+++++|.||.++|++++|++.+++.++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56778888888888888888888888877763
No 224
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.0028 Score=60.29 Aligned_cols=66 Identities=21% Similarity=0.233 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
..+....+.|-.+|+.|+|++|++.|+.|++..--++..-+|.+.|+++.++|..|++...+.++.
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 346778899999999999999999999999999999999999999999999999999999888764
No 225
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.63 E-value=0.018 Score=50.63 Aligned_cols=63 Identities=11% Similarity=0.095 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~ 526 (573)
...+...+..+...|++++|+..+++++..+|.+..+|..+-.+|..+|++.+|++.|++..+
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455667778888999999999999999999999999999999999999999999999998744
No 226
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0055 Score=59.34 Aligned_cols=72 Identities=18% Similarity=0.257 Sum_probs=64.6
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~ 530 (573)
+..-++..|.|++.+.+-.|+|..||..++++++++|.+..+|++=|.|++.++++++|++-|+..++++-+
T Consensus 114 D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 114 DPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred CccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 334457789999999999999999999999999999999999999999999999999999999887776544
No 227
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.01 Score=56.62 Aligned_cols=85 Identities=14% Similarity=0.094 Sum_probs=67.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHH
Q 008244 473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQL 551 (573)
Q Consensus 473 ~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al 551 (573)
.+.+..+|.+||++.+--.+.+|.+-..+.-+|.||+...+|.+|..+|++...+.|... ..+..++.......+..|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 447888999999999999999999999999999999999999999999999999999873 3334455555555566666
Q ss_pred HHHhhc
Q 008244 552 KIFHMH 557 (573)
Q Consensus 552 ~~~~~~ 557 (573)
+...+.
T Consensus 99 rV~~~~ 104 (459)
T KOG4340|consen 99 RVAFLL 104 (459)
T ss_pred HHHHHh
Confidence 655443
No 228
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.54 E-value=0.0017 Score=63.09 Aligned_cols=78 Identities=23% Similarity=0.115 Sum_probs=71.6
Q ss_pred CCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244 453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (573)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~ 530 (573)
+..-...+|..+..+..++.++.+.++...||..|..||+++|+.+.-|--|+.+...+|+|++|.+|+..+++++=+
T Consensus 137 ~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 137 FTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred cccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 444556678889999999999999999999999999999999999999999999999999999999999999999844
No 229
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0091 Score=55.26 Aligned_cols=68 Identities=18% Similarity=0.079 Sum_probs=64.0
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
+|..+.-+.+.+..+++.++|+.....+.+|++++|+....++-+|++++....|.+|+..+.+|..+
T Consensus 40 nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 40 NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 44678889999999999999999999999999999999999999999999999999999999999655
No 230
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.44 E-value=0.016 Score=55.54 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~ 539 (573)
.+++....+.+....+.|+.++|...|..|+.++|+++.++...|.....-++.-+|=++|-+||.++|.+ .++..+++
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 34456666778888899999999999999999999999999999999999999999999999999999998 46655553
No 231
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.0073 Score=56.66 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
+...+.+.+..+.-+++|.+|...|++.++.||.++.+-+|.|.|++-+|+..+|++..+.+++..|..
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 456788899999999999999999999999999999999999999999999999999999999999985
No 232
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.42 E-value=0.016 Score=57.65 Aligned_cols=100 Identities=15% Similarity=0.113 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----cCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-------
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL----NGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKK------- 530 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~----~p~--~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~------- 530 (573)
-.++.++||.+.=.|+|+.|+++|.+.+.+ ... .+..-|.+|+.|.-+++|++||.+..+=|.+...
T Consensus 235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe 314 (639)
T KOG1130|consen 235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE 314 (639)
T ss_pred HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 446778999999999999999999886643 332 3566678999999999999999999998777543
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 531 VRLICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
-.+.|.++..+..++..++|+...+++..+.-.
T Consensus 315 ~RacwSLgna~~alg~h~kAl~fae~hl~~s~e 347 (639)
T KOG1130|consen 315 LRACWSLGNAFNALGEHRKALYFAELHLRSSLE 347 (639)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 258899999999999999999998887765543
No 233
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.29 E-value=0.0092 Score=38.38 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 466 IAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (573)
Q Consensus 466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~ 493 (573)
.+.++|+.+.+.|+|++|+++|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3678999999999999999999996654
No 234
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.28 E-value=0.04 Score=41.82 Aligned_cols=66 Identities=17% Similarity=0.204 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~---~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
..+....+.|..+|.+.+.++|+..++++++..++.. .++-.+..+|...|+|++.++...+=+++
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788999999999999999999999999987765 55556678899999999999988776655
No 235
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.22 E-value=0.023 Score=56.25 Aligned_cols=112 Identities=12% Similarity=0.039 Sum_probs=81.9
Q ss_pred eccCCcHHHHHHHHHHHHHHHHH----HHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 008244 422 ARHGGDRFLLDTVQNMYASLQEQ----ADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 497 (573)
Q Consensus 422 ~~~~~d~~ll~~a~~le~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~ 497 (573)
....+|..+.+++..+-...... ......... ....+..+..+.-++..++..|+|++|.+.+.++++.+|++
T Consensus 158 ~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El---~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 158 QQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEEL---SDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp HCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH---HCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred HhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHH---HhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 46688899999998876554332 122222222 22334457778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCcCcHHHHH
Q 008244 498 ATYYSNRAAAYLESGSF-LQAEADCTKAINLDKKVRLICA 536 (573)
Q Consensus 498 ~~~~~n~a~~~~~l~~~-~~Al~~~~~al~l~p~~~~~~~ 536 (573)
+..+.|+..|...+|+. +.+-+...+.-..+|++.....
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999998 5566777787888999864433
No 236
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.068 Score=56.23 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH-HHHHH
Q 008244 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRL-ICAEA 538 (573)
Q Consensus 466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~-~~~~~ 538 (573)
.+.+.+..+|+.++|..+++.|...+..-|.+ +....+++.||+++.+.+.|++++++|=+.+|.+.. .+..-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 56789999999999999999999999876654 688999999999999999999999999999999841 11122
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 008244 539 QQERCLDITRRQLKIFHM 556 (573)
Q Consensus 539 ~~~~~~~~~~~al~~~~~ 556 (573)
+.....+.-++||.....
T Consensus 436 ~~~~~E~~Se~AL~~~~~ 453 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQK 453 (872)
T ss_pred HHHHHhcchHHHHHHHHH
Confidence 222233555556655543
No 237
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.18 Score=46.77 Aligned_cols=99 Identities=19% Similarity=0.124 Sum_probs=74.5
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcC-
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKK- 530 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~-l~~~~~Al~~~~~al~l~p~- 530 (573)
+..+.+..|.+.++.| +..+.++|+.++.++|++-.+- +..+..+|..|.. +.++++|+.+|++|-+.-..
T Consensus 69 skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e 147 (288)
T KOG1586|consen 69 SKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE 147 (288)
T ss_pred CchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch
Confidence 3334566666666655 5669999999999999987553 4566678888865 58999999999999876543
Q ss_pred ------cHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008244 531 ------VRLICAEAQQERCLDITRRQLKIFHMHW 558 (573)
Q Consensus 531 ------~~~~~~~~~~~~~~~~~~~al~~~~~~~ 558 (573)
|+.+..-++....+++|.+|.+.|++-.
T Consensus 148 es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 148 ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVA 181 (288)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2455556676777799999999998644
No 238
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.12 E-value=0.008 Score=55.27 Aligned_cols=59 Identities=19% Similarity=0.166 Sum_probs=56.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 473 ~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
.+.+.++++.|.+.|++++++.|+....|+++|....+.|+++.|.+.|++.+++||.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 45678999999999999999999999999999999999999999999999999999986
No 239
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.11 E-value=0.045 Score=43.54 Aligned_cols=64 Identities=16% Similarity=0.070 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHHH
Q 008244 483 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---RLICAEAQQERCLDI 546 (573)
Q Consensus 483 Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---~~~~~~~~~~~~~~~ 546 (573)
.+..++++++.+|++..+.+.+|.+++..|++++|++.+-++++.++++ .+...+..+...++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4677889999999999999999999999999999999999999999987 244444455555544
No 240
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=0.056 Score=56.46 Aligned_cols=93 Identities=17% Similarity=0.131 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAE 537 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~---~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~ 537 (573)
+...+++..--.+.+.++|++|+. .|+.++. +....+.++.|++++++.++|+.+++ .+++... ....+
T Consensus 44 dd~~a~~cKvValIq~~ky~~ALk----~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~ 116 (652)
T KOG2376|consen 44 DDEDAIRCKVVALIQLDKYEDALK----LIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELR 116 (652)
T ss_pred CcHhhHhhhHhhhhhhhHHHHHHH----HHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHH
Confidence 556666677777788888888883 3444442 22333688899999999999998888 5555553 66778
Q ss_pred HHHHHHHHHHHHHHHHHhhccccC
Q 008244 538 AQQERCLDITRRQLKIFHMHWSWS 561 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~~~~~~~~~ 561 (573)
++....++.|+++++.|..-.+.+
T Consensus 117 AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 117 AQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC
Confidence 888888899999999888665443
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.97 E-value=0.033 Score=59.10 Aligned_cols=102 Identities=14% Similarity=0.032 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH--HH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR--LI 534 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~----~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~--~~ 534 (573)
|+-+-.++..|..+..+|+.++|++.|++++..... ....++.++.|++.+.+|++|.+++.+.++.+.-.+ ..
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~ 343 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYA 343 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHH
Confidence 455677889999999999999999999999964433 368899999999999999999999999999765555 33
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHhhccccCC
Q 008244 535 CAEAQQERCLDIT-------RRQLKIFHMHWSWSP 562 (573)
Q Consensus 535 ~~~~~~~~~~~~~-------~~al~~~~~~~~~~~ 562 (573)
|..|-++..++.. +++.+.|.+...+..
T Consensus 344 Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 344 YLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 4445555555555 888888887776554
No 242
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.84 E-value=0.042 Score=54.71 Aligned_cols=82 Identities=11% Similarity=-0.020 Sum_probs=65.0
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 008244 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFH 555 (573)
Q Consensus 476 ~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~al~~~~ 555 (573)
+-+++..=++..++.++..|+++.+++.+|..|++.+.|.+|-.+++.|++..|+...+..++.++..++..++|-+.+.
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 45666777777778888899999999999999999999999999999999999997666666666666655555555544
Q ss_pred hc
Q 008244 556 MH 557 (573)
Q Consensus 556 ~~ 557 (573)
.+
T Consensus 386 e~ 387 (400)
T COG3071 386 EA 387 (400)
T ss_pred HH
Confidence 33
No 243
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.84 E-value=0.17 Score=45.36 Aligned_cols=105 Identities=11% Similarity=0.049 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQ 540 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~--~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~ 540 (573)
++..+..+++..+..+++.+|...+++..+.+|. .+....-.+.+|..+|++.+|...|+.++...|+..+.+..++.
T Consensus 123 d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~ 202 (251)
T COG4700 123 DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEM 202 (251)
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3677888999999999999999999999999885 46667777889999999999999999999999998665556655
Q ss_pred HHHHH----HHHHHHHHHhhccccCCCCCCC
Q 008244 541 ERCLD----ITRRQLKIFHMHWSWSPPIKEH 567 (573)
Q Consensus 541 ~~~~~----~~~~al~~~~~~~~~~~~~~~~ 567 (573)
+..++ ...+....++...+-.|+++++
T Consensus 203 La~qgr~~ea~aq~~~v~d~~~r~~~H~rkh 233 (251)
T COG4700 203 LAKQGRLREANAQYVAVVDTAKRSRPHYRKH 233 (251)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhcchhHHHH
Confidence 55554 3333444455554445555543
No 244
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.81 E-value=0.019 Score=35.77 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 497 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~ 497 (573)
+.++++|..+++.|++++|++.|++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367899999999999999999999999999974
No 245
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.77 E-value=0.093 Score=54.07 Aligned_cols=103 Identities=17% Similarity=0.136 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcH-HHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKVR-LICAEAQ 539 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~--~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~-p~~~-~~~~~~~ 539 (573)
.-....+++.+.+.|+.+|||+.|...++..|. +...+.|+-.|++.+++|.++.....+==++. |+.. ..|..+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 344567999999999999999999999998875 56799999999999999999977766632221 4432 1122211
Q ss_pred HHHHH-----------------HHHHHHHHHHhhccccCCCCCCC
Q 008244 540 QERCL-----------------DITRRQLKIFHMHWSWSPPIKEH 567 (573)
Q Consensus 540 ~~~~~-----------------~~~~~al~~~~~~~~~~~~~~~~ 567 (573)
. +.. .+...|.+.++++.+.||+++++
T Consensus 339 L-kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 339 L-KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred H-HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 1 111 13455788999999999998764
No 246
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.72 E-value=0.016 Score=35.16 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 497 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~ 497 (573)
..+..+|..++..+++++|+.+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 457889999999999999999999999998863
No 247
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=0.051 Score=56.77 Aligned_cols=92 Identities=14% Similarity=0.065 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERC 543 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~ 543 (573)
...++..-+.+.++++|++|+...++.|...|++..++...=.|+.++++|++|+..-++-..+.-.+...+.++.++..
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHH
Confidence 46777788889999999999999999999999999999999999999999999995444433333333444789999999
Q ss_pred HHHHHHHHHHHh
Q 008244 544 LDITRRQLKIFH 555 (573)
Q Consensus 544 ~~~~~~al~~~~ 555 (573)
++..++|++.+.
T Consensus 92 lnk~Dealk~~~ 103 (652)
T KOG2376|consen 92 LNKLDEALKTLK 103 (652)
T ss_pred cccHHHHHHHHh
Confidence 999999999988
No 248
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.61 E-value=0.036 Score=59.90 Aligned_cols=101 Identities=24% Similarity=0.358 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCcCc-HHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLE--SGSFLQAEADCTKAINLDKKV-RLIC 535 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~----~~~~~~n~a~~~~~--l~~~~~Al~~~~~al~l~p~~-~~~~ 535 (573)
.+.....+||.++++++|.+|...|..++.+-|. .+..+.|++.||+. +++|.+++.+|+-|+...|.+ +++.
T Consensus 52 ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll 131 (748)
T KOG4151|consen 52 RALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALL 131 (748)
T ss_pred HHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHh
Confidence 3666778999999999999999999999999884 36888999999976 568999999999999999998 6899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 536 AEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 536 ~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
.++.++.+++.++-+++.........|.
T Consensus 132 ~r~~~y~al~k~d~a~rdl~i~~~~~p~ 159 (748)
T KOG4151|consen 132 KRARKYEALNKLDLAVRDLRIVEKMDPS 159 (748)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999987766666664
No 249
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.51 E-value=0.22 Score=54.65 Aligned_cols=94 Identities=10% Similarity=0.038 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH--HHHH--H
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR--LICA--E 537 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~--~~~~--~ 537 (573)
+..-+..-.+..+++.|++++|..+.+..-...+++-..+.-+-.||..++++++|+..|+++++.+|+.. .++- .
T Consensus 41 n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmay 120 (932)
T KOG2053|consen 41 NALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAY 120 (932)
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHH
Confidence 55556667888999999999999776666566778888889999999999999999999999999999963 2222 2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 008244 538 AQQERCLDITRRQLKIFH 555 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~~~ 555 (573)
.+...+..+-+.|++.|.
T Consensus 121 vR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYK 138 (932)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555566677777776
No 250
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.0094 Score=58.40 Aligned_cols=102 Identities=19% Similarity=0.162 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----------CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-----------GN--------NATYYSNRAAAYLESGSFLQAEADCTK 523 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~-----------p~--------~~~~~~n~a~~~~~l~~~~~Al~~~~~ 523 (573)
..+..++.|+..+++++|.+|...|.+++..- ++ -...+.|.+.|-++++.+..|+..+..
T Consensus 221 ~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~ 300 (372)
T KOG0546|consen 221 REEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNE 300 (372)
T ss_pred hhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccc
Confidence 34556778888999999999999998887531 11 135677788888888888888888888
Q ss_pred HHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 524 AINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 524 al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
+++.+++. +++|++++.+..+..++++++.++.+....|.-
T Consensus 301 ~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d 342 (372)
T KOG0546|consen 301 ALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPND 342 (372)
T ss_pred ccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcch
Confidence 88877765 688888888888888888888888887777643
No 251
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=0.089 Score=49.59 Aligned_cols=107 Identities=17% Similarity=0.127 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-H
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK----LN--GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-L 533 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~----~~--p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~ 533 (573)
+.++.....+|...++.|+-+.|...++..-+ ++ -.+-...-|.+.+|.-.++|.+|...++++++.||.+. +
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 46677788899999999999988888874433 22 23467888899999999999999999999999999985 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 008244 534 ICAEAQQERCLDITRRQLKIFHMHWSWSPPIKEH 567 (573)
Q Consensus 534 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 567 (573)
...++.++.++++..+|++..+...+..|...-+
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 6778899999999999999999999988854433
No 252
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.18 E-value=0.08 Score=52.11 Aligned_cols=100 Identities=19% Similarity=0.134 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--C
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----N------ATYYSNRAAAYLESGSFLQAEADCTKAINLDK--K 530 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~----~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p--~ 530 (573)
+.+.+..+|..+-+.++|++|+-+..+|.++--+ + ...++.++.++.++|+..+|.++|++|.++.= .
T Consensus 161 Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G 240 (518)
T KOG1941|consen 161 ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG 240 (518)
T ss_pred eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC
Confidence 4677889999999999999999999999887432 1 46778899999999999999999999987752 2
Q ss_pred c-----HHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244 531 V-----RLICAEAQQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 531 ~-----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
+ ......+.+++..+..+.+++-|+.+.....
T Consensus 241 dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~ 277 (518)
T KOG1941|consen 241 DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA 277 (518)
T ss_pred ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence 3 2455668999999999999999998876544
No 253
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.17 E-value=1.2 Score=40.47 Aligned_cols=99 Identities=16% Similarity=0.062 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--c----
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--V---- 531 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~--~---- 531 (573)
.+.-..+.++|+-|++.|++++|+++|.++.+..... ...+.+.-.+.+..++|.....+..+|-.+--. +
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 3456788999999999999999999999998876443 578888889999999999999999998665422 2
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244 532 -RLICAEAQQERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 532 -~~~~~~~~~~~~~~~~~~al~~~~~~~~ 559 (573)
+.....|......+.|..|.+.|-....
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 2444455666666889999888876543
No 254
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.13 E-value=0.22 Score=46.03 Aligned_cols=90 Identities=17% Similarity=0.160 Sum_probs=59.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-c-HHHHHHHHHHHHHHHH
Q 008244 473 QAYKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-V-RLICAEAQQERCLDIT 547 (573)
Q Consensus 473 ~~~~~~~~~~Ai~~y~~ai~~~p---~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~-~-~~~~~~~~~~~~~~~~ 547 (573)
.++..+++++|+..|.+++..+| .....+..++..+...+++++|+..+.++++..+. . ......+..+...+.+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 66677777777777777766655 34566666666666677777777777777777766 2 3555555666655666
Q ss_pred HHHHHHHhhccccCC
Q 008244 548 RRQLKIFHMHWSWSP 562 (573)
Q Consensus 548 ~~al~~~~~~~~~~~ 562 (573)
+.+...+.......|
T Consensus 219 ~~a~~~~~~~~~~~~ 233 (291)
T COG0457 219 EEALEYYEKALELDP 233 (291)
T ss_pred HHHHHHHHHHHhhCc
Confidence 777777666666555
No 255
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=0.26 Score=48.48 Aligned_cols=68 Identities=12% Similarity=0.065 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
+....++...+..-.|++||+.|++.+.-+|+...+-.++|.||+++.-|+-+-+..+-=|+.-|+..
T Consensus 152 EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt 219 (557)
T KOG3785|consen 152 EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST 219 (557)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH
Confidence 44556777778888999999999999999999999999999999999999999888888888889874
No 256
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=0.25 Score=46.82 Aligned_cols=106 Identities=11% Similarity=0.036 Sum_probs=68.0
Q ss_pred cCCcHHHHHHHHHHHHHHHHHH----HhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH
Q 008244 424 HGGDRFLLDTVQNMYASLQEQA----DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT 499 (573)
Q Consensus 424 ~~~d~~ll~~a~~le~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~ 499 (573)
..+|..|.++|+++-....... ...-.+.++.+ .+..+..+.-++.+.+.+++|++|......+|..+++++.
T Consensus 166 ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 166 IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK---TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE 242 (299)
T ss_pred cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc---cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence 3466677777777655432211 11111222222 2233566677788888888888888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCcH
Q 008244 500 YYSNRAAAYLESGSFLQAEADCTKAIN-LDKKVR 532 (573)
Q Consensus 500 ~~~n~a~~~~~l~~~~~Al~~~~~al~-l~p~~~ 532 (573)
.+.|+=.|-..+|...++...+-.-++ ..|+++
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 888888888888887777665554444 446654
No 257
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.07 E-value=0.16 Score=45.95 Aligned_cols=97 Identities=9% Similarity=-0.106 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQE 541 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~ 541 (573)
......+..+...+++++|+..+++++....+. ..+-.+++.+.+.++++++|+...+..-.-.=.....-.++.++
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDil 169 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHH
Confidence 344556666777777777777777777554443 45566677777777777777766554332211112344566667
Q ss_pred HHHHHHHHHHHHHhhccccC
Q 008244 542 RCLDITRRQLKIFHMHWSWS 561 (573)
Q Consensus 542 ~~~~~~~~al~~~~~~~~~~ 561 (573)
...+...+|...|+++....
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 76777777777777666553
No 258
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.04 E-value=0.055 Score=35.68 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008244 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (573)
Q Consensus 498 ~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~ 528 (573)
..++.|+|.+|..+|++++|+..+++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3567889999999999999999999888764
No 259
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.99 E-value=0.34 Score=39.69 Aligned_cols=93 Identities=13% Similarity=0.168 Sum_probs=72.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCcCc-HHH
Q 008244 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESG-----------SFLQAEADCTKAINLDKKV-RLI 534 (573)
Q Consensus 470 ~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~---~~~~n~a~~~~~l~-----------~~~~Al~~~~~al~l~p~~-~~~ 534 (573)
++..+++.|++-+|++..+..|....++. ..+.--|.++.++. -...+++.|.++..+.|+. ..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 56788999999999999999999887765 66677788876543 2357899999999999997 477
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244 535 CAEAQQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 535 ~~~~~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
+.+++-......|+++++.-++.+++..
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~~ 109 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSVTN 109 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcccC
Confidence 7777766666777777777777766543
No 260
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.94 E-value=0.022 Score=36.05 Aligned_cols=31 Identities=16% Similarity=-0.020 Sum_probs=27.9
Q ss_pred HHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHH
Q 008244 521 CTKAINLDKKVR-LICAEAQQERCLDITRRQL 551 (573)
Q Consensus 521 ~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al 551 (573)
|++||+++|++. +++.+|.++...+++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 789999999994 9999999999999988875
No 261
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.73 E-value=0.23 Score=39.96 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=49.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 473 QAYKDKQWLKAISFYTEAIKLNGN---------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 473 ~~~~~~~~~~Ai~~y~~ai~~~p~---------~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
...+.++|.+|++.+.+..+.... ...+..++|.++..+|++++|++.+++|+++-...
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 346789999999998888876432 14678899999999999999999999999987553
No 262
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.69 E-value=0.35 Score=44.61 Aligned_cols=102 Identities=22% Similarity=0.192 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ 539 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~-~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~ 539 (573)
.....+...+..+...+++++|+..+.++++..+. ....+.+++.++...+++++|+..+.++++..|.. ......+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 244 (291)
T COG0457 165 ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLAL 244 (291)
T ss_pred chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHH
Confidence 44566666777788999999999999999999999 79999999999999999999999999999999983 34444444
Q ss_pred HHHHHHHHHHHHHHHhhccccCCC
Q 008244 540 QERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
.....+.++++...+.......|.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 245 LLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc
Confidence 444445677777777777766653
No 263
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.64 E-value=0.38 Score=45.05 Aligned_cols=103 Identities=15% Similarity=0.097 Sum_probs=77.4
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--- 530 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~--- 530 (573)
.|+.+..-.+++-...+..+.++|++.|++++.+-.++ ...+...+.+|.++++|.||-..+.+-..+.-.
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~ 185 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA 185 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence 45667777788888889999999999999999764332 577888899999999999998888775433211
Q ss_pred ----cHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244 531 ----VRLICAEAQQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 531 ----~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
.+++...-.++...+.|..+-+.|....++..
T Consensus 186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~ 221 (308)
T KOG1585|consen 186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA 221 (308)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc
Confidence 13454555566667899999999988766653
No 264
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.59 E-value=0.68 Score=39.27 Aligned_cols=69 Identities=6% Similarity=0.003 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHH-hcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 464 AEIAKEKGNQAYKD---KQWLKAISFYTEAIK-LNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 464 ~~~~~~~g~~~~~~---~~~~~Ai~~y~~ai~-~~p~-~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
.+..++.+..+.+. .+-++-|.+++..++ -.|. .-.+.+.++..++++++|++++++++..|+.+|+|+
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 45566777777665 455778999999997 3343 457888899999999999999999999999999985
No 265
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.45 Score=45.98 Aligned_cols=98 Identities=15% Similarity=0.082 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK-------------------- 523 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~-------------------- 523 (573)
.+....++..+...+++.+|...+..+++..|++..+...++.||...|+.++|...+..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 344566788888999999999999999999999999999999999999999777654442
Q ss_pred --------------HHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008244 524 --------------AINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWS 561 (573)
Q Consensus 524 --------------al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 561 (573)
.+..||++ .+.+.++..+...++.++|+..+-...+.+
T Consensus 214 ~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 214 EQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 12235654 467777888888888888888776555443
No 266
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.50 E-value=0.24 Score=34.91 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008244 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA 507 (573)
Q Consensus 466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~ 507 (573)
-++.++..+++.|+|++|.++.+.+|+++|+|..+..-+..+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 456788899999999999999999999999998876654443
No 267
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=0.26 Score=47.24 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ 539 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~ 539 (573)
.....+.-..+.+.++++.|..+-++.|.++|+++.-+..||.+|.++|-+.-|++|+...++..|+.. +.+.+.+
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 334556777889999999999999999999999999999999999999999999999999999999985 3333333
No 268
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=94.42 E-value=0.52 Score=50.19 Aligned_cols=97 Identities=12% Similarity=-0.001 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH-HHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLIC-AEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~-~~~~ 539 (573)
|.....|..+|.++-+.++.+.|.+.|.+.++..|+...+|..++..-.+.|+.-.|...++++.-.||++..++ ..-+
T Consensus 682 p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir 761 (913)
T KOG0495|consen 682 PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIR 761 (913)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHH
Confidence 445566888999999999999999999999999999999999999999999999999999999999999985333 3333
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 008244 540 QERCLDITRRQLKIFHMH 557 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~ 557 (573)
.....+..+.|-....++
T Consensus 762 ~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 333334444443333333
No 269
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.42 E-value=0.91 Score=43.22 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=54.3
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHH
Q 008244 477 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAE 537 (573)
Q Consensus 477 ~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~ 537 (573)
.+++++|.-.|++--+..+..+......+.|++.+++|++|....+.||..+++++ .+..+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 46799999999999998889999999999999999999999999999999999985 44333
No 270
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.41 E-value=0.98 Score=44.53 Aligned_cols=101 Identities=12% Similarity=0.023 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH----HHHHH
Q 008244 463 SAEIAKEKGNQAYK-DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR----LICAE 537 (573)
Q Consensus 463 ~~~~~~~~g~~~~~-~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~----~~~~~ 537 (573)
....|...+...++ .++.+.|...|+.+++..|.+..+|......+.++++.+.|...|++++..-|... .+...
T Consensus 34 ~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~ 113 (280)
T PF05843_consen 34 TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKF 113 (280)
T ss_dssp -THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 45678888888777 67777799999999999999999999999999999999999999999999876653 44444
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 538 AQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
.+.+...|..+...+.+.+...+-|.
T Consensus 114 i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 114 IEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 56666666666666666665555443
No 271
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.25 E-value=0.39 Score=49.14 Aligned_cols=100 Identities=17% Similarity=0.193 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQER 542 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~ 542 (573)
...|..-|.=-..+++++.|...|.+||..+..+..+|...+.+-++.+....|-..+++|+.+=|.- ...|......+
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34455555555678889999999999999999999999999999999999999999999999999985 57777778888
Q ss_pred HHHHHHHHHHHHhhccccCCC
Q 008244 543 CLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 543 ~~~~~~~al~~~~~~~~~~~~ 563 (573)
.++.+.-+-+.|++=..|+|.
T Consensus 153 ~LgNi~gaRqiferW~~w~P~ 173 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPD 173 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCc
Confidence 889999999999988888885
No 272
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.14 E-value=0.32 Score=48.08 Aligned_cols=128 Identities=10% Similarity=0.082 Sum_probs=63.1
Q ss_pred ceeEEEeccCCcHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHH----HH
Q 008244 416 TSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTE----AI 491 (573)
Q Consensus 416 vGlq~~~~~~~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~----ai 491 (573)
-|+|+...+..+..|......++..-....+ ...+--...+..+.|.|++++..--- +.
T Consensus 12 ~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~R-----------------f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~ 74 (518)
T KOG1941|consen 12 KGLQLYQSNQTEKALQVWTKVLEKLSDLMGR-----------------FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAR 74 (518)
T ss_pred HHHhHhcCchHHHHHHHHHHHHHHHHHHHHH-----------------HHHhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3555666665555555555555533221111 11112233344455555555543222 22
Q ss_pred HhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244 492 KLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV------RLICAEAQQERCLDITRRQLKIFHMHWSW 560 (573)
Q Consensus 492 ~~~p~--~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~al~~~~~~~~~ 560 (573)
+.+.. ...+|.|++..+.++.+|.+++.+++..+.+.... ......+.++..++.++++++.|+.++.+
T Consensus 75 ~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~ 151 (518)
T KOG1941|consen 75 ELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRY 151 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 22211 13566666666666666666666666666653221 23444555555566666666666655544
No 273
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.07 E-value=0.38 Score=56.17 Aligned_cols=91 Identities=10% Similarity=0.003 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHH
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINL--DKKVRLICAEAQQE 541 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~-p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l--~p~~~~~~~~~~~~ 541 (573)
..+..+...|.+.|++++|++.|++..+.+ +.+...|..+-.+|.+.|++++|++.|++..+. .|+...+......+
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~ 659 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344445555566666666666666655554 234455555555555555555555555555543 34433333333333
Q ss_pred HHHHHHHHHHHHHh
Q 008244 542 RCLDITRRQLKIFH 555 (573)
Q Consensus 542 ~~~~~~~~al~~~~ 555 (573)
...+.+++|++.|+
T Consensus 660 ~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 660 GHAGDLDKAFEILQ 673 (1060)
T ss_pred HhCCCHHHHHHHHH
Confidence 33334444444443
No 274
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=1.2 Score=41.76 Aligned_cols=69 Identities=22% Similarity=0.091 Sum_probs=56.9
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~ 528 (573)
-...+..+.+-++.+...++|++|-.++.+|++-..++ +.+|-..++...++..+.|+...|++|..+.
T Consensus 27 ~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 27 WDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred chhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34457788888888888999999999999999766554 4677777888888999999999999998875
No 275
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=93.71 E-value=0.23 Score=56.02 Aligned_cols=90 Identities=13% Similarity=0.030 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--DKKVRLICAEAQQER 542 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l--~p~~~~~~~~~~~~~ 542 (573)
..+..+...|.+.|++++|.+.|++..+ .+...|+.+...|.+.|+.++|++.|++.++. .|+...+......+.
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 3444556666666666666666665432 24455666666666666666666666665543 355544444444444
Q ss_pred HHHHHHHHHHHHhhc
Q 008244 543 CLDITRRQLKIFHMH 557 (573)
Q Consensus 543 ~~~~~~~al~~~~~~ 557 (573)
..+..+++++.|+..
T Consensus 438 ~~g~~~~a~~~f~~m 452 (697)
T PLN03081 438 YSGLSEQGWEIFQSM 452 (697)
T ss_pred cCCcHHHHHHHHHHH
Confidence 445555555555544
No 276
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=93.50 E-value=0.34 Score=48.47 Aligned_cols=94 Identities=14% Similarity=0.095 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQE 541 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~-~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~ 541 (573)
...+.--+...-+.|+++.|-.+..++-++.++ .-..+..|+..+...+++..|....+++++..|.++ .+....+++
T Consensus 118 ~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y 197 (400)
T COG3071 118 VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAY 197 (400)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence 444555556667778888888888888887544 346667788888888888888888888888888886 333344667
Q ss_pred HHHHHHHHHHHHHhhc
Q 008244 542 RCLDITRRQLKIFHMH 557 (573)
Q Consensus 542 ~~~~~~~~al~~~~~~ 557 (573)
...++|.+.++....-
T Consensus 198 ~~~g~~~~ll~~l~~L 213 (400)
T COG3071 198 IRLGAWQALLAILPKL 213 (400)
T ss_pred HHhccHHHHHHHHHHH
Confidence 7778887777776543
No 277
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.33 E-value=0.33 Score=50.81 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
..++++.+.+.+-..+|-..+.++|.++...+..++..|..|+.+.+.+.|++.+++|++++|++
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~ 709 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKC 709 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCC
Confidence 45667777777777777777777777777777777777777777777777777777777777776
No 278
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=0.68 Score=48.81 Aligned_cols=108 Identities=16% Similarity=-0.079 Sum_probs=84.7
Q ss_pred CCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCcCcH--
Q 008244 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK-AINLDKKVR-- 532 (573)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~-al~l~p~~~-- 532 (573)
....+++-....+ +...+...+....++.....++..+|+++.++.|++.++...+....++.+..+ +.+..|++.
T Consensus 60 ~~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~ 138 (620)
T COG3914 60 INDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEF 138 (620)
T ss_pred cCCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHH
Confidence 3445555555555 677777788988999999999999999999999999999998887776666655 888889872
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 533 -----LICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 533 -----~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
.++..++....++...++....+....+.|..
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 139 LGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred HhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence 33446788888888888888888888777755
No 279
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.27 E-value=0.21 Score=32.81 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 494 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~ 494 (573)
+..+.++|..|...|+|++|+..+++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4578899999999999999999999999874
No 280
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.25 E-value=1 Score=52.50 Aligned_cols=97 Identities=10% Similarity=-0.036 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-------
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV------- 531 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~-----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~------- 531 (573)
.......+..++..|++++|...++++++..+.. ..++.++|.++...|++++|+..+++++.+....
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 4445568888999999999999999999865542 2567889999999999999999999999875432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244 532 RLICAEAQQERCLDITRRQLKIFHMHWSW 560 (573)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~ 560 (573)
..+...+.++...+++++|...++.+..+
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 24455566777777788887777766553
No 281
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.22 E-value=1 Score=37.34 Aligned_cols=64 Identities=14% Similarity=0.009 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAI-------KLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai-------~~~p~~----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
+-.+--+...+...|+|++++..-.++| +++.+. ..+-++|+.++..+|+.++|+..|+++.+.
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4455667888899999999888877777 445554 356689999999999999999999998764
No 282
>PLN03077 Protein ECB2; Provisional
Probab=93.18 E-value=0.36 Score=55.84 Aligned_cols=92 Identities=8% Similarity=-0.025 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHHHH
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAIN---LDKKVRLICAEAQ 539 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~--~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~---l~p~~~~~~~~~~ 539 (573)
..|..+...|.+.|+.++|++.|++.++. .|+... |..+-.++.+.|++++|.+.|++..+ +.|+...+.....
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 34445555555555555555555554442 233322 22233344455555555555555542 2344444444444
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 008244 540 QERCLDITRRQLKIFHMH 557 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~ 557 (573)
.+...+.+++|.+.++..
T Consensus 634 ~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHhCCCHHHHHHHHHHC
Confidence 444445555555555543
No 283
>PLN03218 maturation of RBCL 1; Provisional
Probab=93.17 E-value=0.75 Score=53.81 Aligned_cols=95 Identities=14% Similarity=0.020 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCcHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG-NNATYYSNRAAAYLESGSFLQAEADCTKAIN----LDKKVRLICAEA 538 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p-~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~----l~p~~~~~~~~~ 538 (573)
...|..+...|.+.|++++|++.|.+..+..- -+...|+.+-.+|.+.|++++|++.+++..+ +.|+...+....
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI 586 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM 586 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 34455555566666666666666665544321 1344555555666666666666666665543 345543333333
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 008244 539 QQERCLDITRRQLKIFHMHW 558 (573)
Q Consensus 539 ~~~~~~~~~~~al~~~~~~~ 558 (573)
..+...+.+++|++.|+...
T Consensus 587 ~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 33334445555555555443
No 284
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.10 E-value=0.84 Score=42.57 Aligned_cols=101 Identities=18% Similarity=0.149 Sum_probs=76.1
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG------NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV- 531 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p------~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~- 531 (573)
...+.++.+.+-+|.|--.+++..|=..|-++-+..- +-+..|...+.||-+. +..+|+++.++++++-.+.
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~G 107 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMG 107 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhh
Confidence 4455667777777888888999999999988876532 2368888888998555 9999999999999997663
Q ss_pred ------HHHHHHHHHHHHH-HHHHHHHHHHhhcccc
Q 008244 532 ------RLICAEAQQERCL-DITRRQLKIFHMHWSW 560 (573)
Q Consensus 532 ------~~~~~~~~~~~~~-~~~~~al~~~~~~~~~ 560 (573)
+.+...++.++.- ..+++++.+|+++-.|
T Consensus 108 rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 108 RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 2344456666655 7788888888877654
No 285
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.05 E-value=4.6 Score=38.48 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCcCc
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESG--------SFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~--------~~~~Al~~~~~al~l~p~~ 531 (573)
-+....++..+++.++|++|+...++-|.+.|++ .-+++-+|.+++..- --.+|+.++++.++.-|+.
T Consensus 71 ~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS 149 (254)
T COG4105 71 EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS 149 (254)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence 4667889999999999999999999999999876 578888999987632 2378889999999999996
No 286
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.97 E-value=0.17 Score=32.79 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008244 499 TYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (573)
Q Consensus 499 ~~~~n~a~~~~~l~~~~~Al~~~~~al~l~ 528 (573)
..|..+|.+-+..++|++|+.||+++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888764
No 287
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.81 E-value=0.67 Score=46.37 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=71.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---cCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHH
Q 008244 467 AKEKGNQAYKDKQWLKAISFYTEAIKL---NGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAE 537 (573)
Q Consensus 467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~---~p~~-----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~ 537 (573)
+...-...+..|+++.|++..+...+. .++. +.++.-.++.... -+...|..+..++++|.|++ ++...-
T Consensus 191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~A 269 (531)
T COG3898 191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVA 269 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHH
Confidence 334445668899999999998776543 3332 3444444444433 35899999999999999998 466666
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 538 AQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
+..+...+...++-+.++.+|+..|+
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCC
Confidence 77777779999999999999999986
No 288
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.49 E-value=0.88 Score=44.65 Aligned_cols=101 Identities=9% Similarity=-0.104 Sum_probs=62.5
Q ss_pred ccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-----H
Q 008244 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-----R 532 (573)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-----~ 532 (573)
...|-..-.+--.+-.+.+.|-|.+|.+.-++++++++.+..+....|.++...++++|+.+...+--....+. .
T Consensus 169 ~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasH 248 (491)
T KOG2610|consen 169 ADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASH 248 (491)
T ss_pred CCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhh
Confidence 33333333333345555677777888877788888887777777777777777777777777666543332222 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008244 533 LICAEAQQERCLDITRRQLKIFHMHW 558 (573)
Q Consensus 533 ~~~~~~~~~~~~~~~~~al~~~~~~~ 558 (573)
-++.-+.++..-..|+.++.+|+...
T Consensus 249 NyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 249 NYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhHHHHHhhhcccchhHHHHHHHHHH
Confidence 33333444444477888888887543
No 289
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.42 E-value=1.1 Score=49.43 Aligned_cols=95 Identities=13% Similarity=-0.034 Sum_probs=78.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCc-HHHHHHHHHHHHHH
Q 008244 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKV-RLICAEAQQERCLD 545 (573)
Q Consensus 468 ~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~-p~~-~~~~~~~~~~~~~~ 545 (573)
..--......++|++|+....+.++..|+...+..-.|..++++|++++|. -|-+++..- +++ ..+.....++.-++
T Consensus 13 ~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~-~~Le~~~~~~~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 13 LRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEAL-KLLEALYGLKGTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHH-HHHhhhccCCCCchHHHHHHHHHHHHHh
Confidence 334445567899999999999999999999999999999999999999999 555555544 444 35555667788889
Q ss_pred HHHHHHHHHhhccccCCC
Q 008244 546 ITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 546 ~~~~al~~~~~~~~~~~~ 563 (573)
..+++...|+++.+..|.
T Consensus 92 ~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS 109 (932)
T ss_pred hhhHHHHHHHHHHhhCCc
Confidence 999999999999999887
No 290
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.06 E-value=2 Score=44.66 Aligned_cols=60 Identities=7% Similarity=-0.136 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008244 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---RLICAEAQQERCLDITRRQLKIFHMH 557 (573)
Q Consensus 498 ~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~al~~~~~~ 557 (573)
.-+..++|+|.-++|+.+||++.++..++.+|.. ...+.+.+++..++++.++.+.+.+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3555678999999999999999999999998873 25666666666666666666665553
No 291
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.05 E-value=0.84 Score=48.54 Aligned_cols=88 Identities=15% Similarity=-0.032 Sum_probs=76.7
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-----HHHHHHHHHHHHHHHHHHH
Q 008244 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-----RLICAEAQQERCLDITRRQ 550 (573)
Q Consensus 476 ~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-----~~~~~~~~~~~~~~~~~~a 550 (573)
...+.+.|.+...+..+..|+....++..|..+...|+.++|++.+++++....+. -.++.++-++..+.+|++|
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 45677889999999999999999999999999999999999999999999655444 2677788889999999999
Q ss_pred HHHHhhccccCCC
Q 008244 551 LKIFHMHWSWSPP 563 (573)
Q Consensus 551 l~~~~~~~~~~~~ 563 (573)
.+.|..-.+.+.+
T Consensus 325 ~~~f~~L~~~s~W 337 (468)
T PF10300_consen 325 AEYFLRLLKESKW 337 (468)
T ss_pred HHHHHHHHhcccc
Confidence 9999988776665
No 292
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.03 E-value=1 Score=52.50 Aligned_cols=95 Identities=11% Similarity=-0.002 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-------
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV------- 531 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~------- 531 (573)
..+...|..+...|++++|...|.++++..... ...+.++|.+++..|++++|...+++++++....
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 344555666666666666666666666542211 2344555666666666666666666665542110
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244 532 --RLICAEAQQERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 532 --~~~~~~~~~~~~~~~~~~al~~~~~~~~ 559 (573)
..+..++.++...+++++|...+..+..
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 1222334444444555555555554443
No 293
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=91.71 E-value=1 Score=50.87 Aligned_cols=95 Identities=8% Similarity=-0.073 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--KKVRLICAEAQ 539 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~-p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~--p~~~~~~~~~~ 539 (573)
+...|..+...|.+.|++++|++.|++..+.. .-+...|..+-.+|.+++++++|.+.+.++++.. |+...+..+..
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~ 368 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence 45678888899999999999999998877643 2245567778888888888888888888877764 33333333444
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 008244 540 QERCLDITRRQLKIFHMH 557 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~ 557 (573)
.+...+.+++|.+.|+..
T Consensus 369 ~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 369 LYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHCCCHHHHHHHHHhC
Confidence 444445566666666544
No 294
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.60 E-value=0.3 Score=50.04 Aligned_cols=82 Identities=18% Similarity=0.121 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--------c---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK-L--------N---------GNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~-~--------~---------p~~~~~~~n~a~~~~~l~~~~~Al~~~~~a 524 (573)
....|+++|-++|+.+.|+-++..|.+|++ . . -....+.||.|..|+..|+..+|.++|.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 456788999999999999999999999996 1 1 123689999999999999999999999999
Q ss_pred HHhCcCcH-HHHHHHHHHHHH
Q 008244 525 INLDKKVR-LICAEAQQERCL 544 (573)
Q Consensus 525 l~l~p~~~-~~~~~~~~~~~~ 544 (573)
++.--.++ .+.+++++....
T Consensus 362 v~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHhcCcHHHHHHHHHHHHH
Confidence 99876664 666677766543
No 295
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=91.55 E-value=0.16 Score=49.98 Aligned_cols=67 Identities=19% Similarity=0.059 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
...+.+...++.+.+..|+.....+++.+++...+|+.|++.|+.+.++++|+++...+...+|++.
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~ 343 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK 343 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH
Confidence 3344777788999999999999999999999999999999999999999999999999999999985
No 296
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.95 E-value=2 Score=39.76 Aligned_cols=61 Identities=16% Similarity=0.084 Sum_probs=56.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 471 g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
...+.+.++.++||....+-++-+|.+......+-..|.-.|+|++|+..++-+-++.|++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 4567889999999999999999999999988888899999999999999999999999998
No 297
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=90.88 E-value=0.46 Score=49.25 Aligned_cols=79 Identities=14% Similarity=-0.057 Sum_probs=66.4
Q ss_pred CCCCCccChHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008244 453 LSTNTFNQKQSAEIAKEKGNQAYKD---KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529 (573)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p 529 (573)
++......+.....+.+++..+++. ++.-.|+..+..|++++|....+|+.++.|+..++++.+|+++...+....|
T Consensus 397 ~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 397 YSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 3334444556777888888888774 6778899999999999999999999999999999999999999888888888
Q ss_pred Cc
Q 008244 530 KV 531 (573)
Q Consensus 530 ~~ 531 (573)
.+
T Consensus 477 td 478 (758)
T KOG1310|consen 477 TD 478 (758)
T ss_pred hh
Confidence 54
No 298
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.72 E-value=2.1 Score=42.13 Aligned_cols=89 Identities=12% Similarity=0.032 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-NGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA 538 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~-~p~~~---~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~ 538 (573)
...++..=..++-.|+...-...+.+.|.. +++.+ -..-..+.++..+|-|++|.+..++++++||.+ -+...++
T Consensus 137 lla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~a 216 (491)
T KOG2610|consen 137 LLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKA 216 (491)
T ss_pred hhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHH
Confidence 333333344444445555555555555544 44432 222334445555555555555555555555554 2333444
Q ss_pred HHHHHHHHHHHHHH
Q 008244 539 QQERCLDITRRQLK 552 (573)
Q Consensus 539 ~~~~~~~~~~~al~ 552 (573)
-+++..+++.++.+
T Consensus 217 HVlem~~r~Keg~e 230 (491)
T KOG2610|consen 217 HVLEMNGRHKEGKE 230 (491)
T ss_pred HHHHhcchhhhHHH
Confidence 44444444444443
No 299
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=90.68 E-value=0.74 Score=48.38 Aligned_cols=91 Identities=14% Similarity=0.050 Sum_probs=79.4
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHH
Q 008244 475 YKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLK 552 (573)
Q Consensus 475 ~~~~~~~~Ai~~y~~ai~~~p~~-~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~ 552 (573)
.-+|+...|+.|+..|+-..|.. ..-..|+|+++++.+-..+|-....++|.++-..+ .++.++..+..+.....|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 45799999999999999999854 46678999999999999999999999999994443 77788999999999999999
Q ss_pred HHhhccccCCCCC
Q 008244 553 IFHMHWSWSPPIK 565 (573)
Q Consensus 553 ~~~~~~~~~~~~~ 565 (573)
.|..+.++.|...
T Consensus 698 ~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 698 AFRQALKLTTKCP 710 (886)
T ss_pred HHHHHHhcCCCCh
Confidence 9999999888544
No 300
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.58 E-value=0.46 Score=30.84 Aligned_cols=30 Identities=17% Similarity=0.384 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLN 494 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~ 494 (573)
+.+..+|.+-+..++|++|++.|.++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 457789999999999999999999999874
No 301
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=90.44 E-value=2.1 Score=42.20 Aligned_cols=98 Identities=10% Similarity=-0.098 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHH
Q 008244 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKVR-LICAEAQQERC 543 (573)
Q Consensus 466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~-l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~ 543 (573)
.|.+..+...+.+..+.|...|.+|++..+.....|..-|..-+. .++.+.|.+.|+.+++.-|.+. ........+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 456666777777779999999999997666778889988988667 4566669999999999999984 44445566677
Q ss_pred HHHHHHHHHHHhhccccCCC
Q 008244 544 LDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 544 ~~~~~~al~~~~~~~~~~~~ 563 (573)
++..+.+-..|+++...-+.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~ 102 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPK 102 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSC
T ss_pred hCcHHHHHHHHHHHHHhcCc
Confidence 78999999999999876553
No 302
>PLN03077 Protein ECB2; Provisional
Probab=90.41 E-value=1.5 Score=50.75 Aligned_cols=87 Identities=8% Similarity=-0.003 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHH
Q 008244 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN--LDKKVRLICAEAQQERCLD 545 (573)
Q Consensus 468 ~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~--l~p~~~~~~~~~~~~~~~~ 545 (573)
..+-..|.+.|++++|.+.|++. +.+...|+.+-..|.+.|+.++|++.|++..+ +.|+...+......+...+
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 34556667777777777777664 45666777777777777777777777777665 3466544444444444456
Q ss_pred HHHHHHHHHhhcc
Q 008244 546 ITRRQLKIFHMHW 558 (573)
Q Consensus 546 ~~~~al~~~~~~~ 558 (573)
.++++++.|+...
T Consensus 604 ~v~ea~~~f~~M~ 616 (857)
T PLN03077 604 MVTQGLEYFHSME 616 (857)
T ss_pred hHHHHHHHHHHHH
Confidence 6777777776543
No 303
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=89.83 E-value=1.7 Score=33.01 Aligned_cols=31 Identities=26% Similarity=0.187 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~ 493 (573)
.+..+..++..+-+.|+|++||.+|+++|++
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4566677777777888888888877666653
No 304
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=89.72 E-value=1.2 Score=28.47 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHHhCcC
Q 008244 500 YYSNRAAAYLESGSFLQAEAD--CTKAINLDKK 530 (573)
Q Consensus 500 ~~~n~a~~~~~l~~~~~Al~~--~~~al~l~p~ 530 (573)
.++..|.++...|++++|++. |+-+..+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 344555555555555555555 3355555543
No 305
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.68 E-value=2.2 Score=43.22 Aligned_cols=95 Identities=14% Similarity=0.007 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 008244 433 TVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIA--KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE 510 (573)
Q Consensus 433 ~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~ 510 (573)
.+..|..+|.-...............++-.....+ -++..+|++.++.+.|+....+.|-++|....-+..+|.|+..
T Consensus 195 Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~ 274 (569)
T PF15015_consen 195 AAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRR 274 (569)
T ss_pred HHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHH
Confidence 33444444444444433333333333333333333 4578899999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHh
Q 008244 511 SGSFLQAEADCTKAINL 527 (573)
Q Consensus 511 l~~~~~Al~~~~~al~l 527 (573)
+.+|.+|.+.+.-+.-+
T Consensus 275 LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 275 LERYSEAARSAMIADYM 291 (569)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988777543
No 306
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.51 E-value=8.6 Score=36.11 Aligned_cols=77 Identities=18% Similarity=0.095 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008244 462 QSAEIAKEKGNQAYKDKQ-------WLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~-------~~~Ai~~y~~ai~~~p~------~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~ 528 (573)
..+..+...+..+-..++ ++.|++.|.++++.... ...+.+-+|..+.++|++++|++.|.+++...
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 556667777777766666 46677777777765532 36788889999999999999999999999876
Q ss_pred cCcH--HHHHHH
Q 008244 529 KKVR--LICAEA 538 (573)
Q Consensus 529 p~~~--~~~~~~ 538 (573)
-... .+..++
T Consensus 196 ~~s~~~~l~~~A 207 (214)
T PF09986_consen 196 KASKEPKLKDMA 207 (214)
T ss_pred CCCCcHHHHHHH
Confidence 4443 444443
No 307
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=89.19 E-value=8 Score=29.66 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~ 493 (573)
..+..+..++..+=+.|+|++|+.+|.++|+.
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44667777888888888888888887666543
No 308
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.04 E-value=4.6 Score=41.54 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~ 523 (573)
.......+.-+|.+|+|.++..+.....+++| ++.+|.-+|.|++..++|+||..++..
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 44556677788999999999999999999999 999999999999999999999988764
No 309
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.68 E-value=7 Score=38.10 Aligned_cols=66 Identities=14% Similarity=0.036 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
.....+.++...+...++++.++..+++.|..+|-+-.+|..+=..|++.|+...|+..|++.-++
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 457788889999999999999999999999999999999999999999999999999999987663
No 310
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.48 E-value=10 Score=39.29 Aligned_cols=88 Identities=17% Similarity=0.112 Sum_probs=58.5
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHH
Q 008244 475 YKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQ 550 (573)
Q Consensus 475 ~~~~~~~~Ai~~y~~ai~~~p~~----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~a 550 (573)
....+.+.+.+.|+.+|++-|.. +..|...|+-..+..+...|-+.+-.|+.+.|..+.....-+....+..++..
T Consensus 377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRC 456 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHH
Confidence 45577788888888888887753 56777777777777777777777777777777665554445555555555555
Q ss_pred HHHHhhccccCC
Q 008244 551 LKIFHMHWSWSP 562 (573)
Q Consensus 551 l~~~~~~~~~~~ 562 (573)
-+.|++-+.++|
T Consensus 457 RkLYEkfle~~P 468 (677)
T KOG1915|consen 457 RKLYEKFLEFSP 468 (677)
T ss_pred HHHHHHHHhcCh
Confidence 556655555555
No 311
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=88.46 E-value=2.2 Score=34.98 Aligned_cols=65 Identities=14% Similarity=0.188 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008244 464 AEIAKEKGNQAYKDK-----------QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~-----------~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~ 528 (573)
...+..+|..+++.. -...++++|+++..+.|+.+..++++|.-+-....|++++.-|+++|.+.
T Consensus 33 ~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 33 WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 356667777775432 23568999999999999999999999998888888999999999999864
No 312
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.29 E-value=2.7 Score=33.42 Aligned_cols=65 Identities=5% Similarity=0.001 Sum_probs=45.0
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTK 523 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~--~~~~~n~a~~~~~l~~~~~Al~~~~~ 523 (573)
.+|++....+.++..++..|+|++|++.+-+.++.+++. ..+.-.+=.++-.+|.-+.-...|++
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 346788999999999999999999999999999998765 45555555555556655444444444
No 313
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.07 E-value=0.67 Score=27.09 Aligned_cols=24 Identities=25% Similarity=0.007 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 008244 499 TYYSNRAAAYLESGSFLQAEADCT 522 (573)
Q Consensus 499 ~~~~n~a~~~~~l~~~~~Al~~~~ 522 (573)
.+++++|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356777777777777777777654
No 314
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=87.89 E-value=2.2 Score=41.35 Aligned_cols=59 Identities=14% Similarity=0.061 Sum_probs=53.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244 508 YLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 508 ~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 566 (573)
..+.|+.++|...|+.|++++|++. .+...++..+..+.+-+|-++|-+++.++|...|
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 4478999999999999999999995 8888899999889999999999999999997655
No 315
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=87.68 E-value=2 Score=27.49 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhcCCC
Q 008244 465 EIAKEKGNQAYKDKQWLKAISF--YTEAIKLNGNN 497 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~--y~~ai~~~p~~ 497 (573)
+.+...|..++.+|+|++|++. |.-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4567789999999999999999 54887777754
No 316
>PRK10941 hypothetical protein; Provisional
Probab=87.68 E-value=1.5 Score=42.64 Aligned_cols=65 Identities=15% Similarity=0.056 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 499 ~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
....|+=.+|.+.++++.|+.+.+..+.++|++. ....+|.++..++.+..|+..++.-....|.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 4567788899999999999999999999999996 4555899999999999999999888777764
No 317
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.60 E-value=4.3 Score=36.98 Aligned_cols=67 Identities=19% Similarity=0.067 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
+..-.+++.+.+++|++++|+..++..-..+ -.+..--.||.+++..|+-++|...|.++++.+++.
T Consensus 126 ~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 126 ALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 4556678999999999999998765432211 123445669999999999999999999999998554
No 318
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.67 E-value=22 Score=31.45 Aligned_cols=69 Identities=10% Similarity=-0.011 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~ 530 (573)
|+.++.-.-.|..+.+.|+|.+|+..++...+..|..+.+-.-++.|++.+++..= -.+.+++++-.++
T Consensus 41 P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W-r~~A~evle~~~d 109 (160)
T PF09613_consen 41 PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW-RRYADEVLESGAD 109 (160)
T ss_pred CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHhcCCC
Confidence 33444445566666666666666666666666666666666666666666665321 1224555555544
No 319
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=85.37 E-value=17 Score=36.52 Aligned_cols=80 Identities=10% Similarity=0.005 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH------HHHHHH-----HHHHHHHHHH
Q 008244 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR------LICAEA-----QQERCLDITR 548 (573)
Q Consensus 480 ~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~------~~~~~~-----~~~~~~~~~~ 548 (573)
.+.-+..|++||+.+|++..++..+=.+..++.+-++..+-+++++..+|++. ..+.+. .+....+.|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 45667889999999999999999988899999999999999999999999873 222222 2345556777
Q ss_pred HHHHHHhhccc
Q 008244 549 RQLKIFHMHWS 559 (573)
Q Consensus 549 ~al~~~~~~~~ 559 (573)
++++.+.....
T Consensus 127 ~~l~~L~~~~~ 137 (321)
T PF08424_consen 127 KCLRALSRRRS 137 (321)
T ss_pred HHHHHHHHhhc
Confidence 77777665443
No 320
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.94 E-value=19 Score=36.66 Aligned_cols=95 Identities=16% Similarity=0.134 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cC--c
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLD-------KK--V 531 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~-------p~--~ 531 (573)
-..+.+.|..|+..|+++.|+++|.++-+.+.+. ...|.|.=.+-..+++|.+-+.+-.+|..-- +. .
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 4567889999999999999999999977776543 4677788788888999999999888886651 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008244 532 RLICAEAQQERCLDITRRQLKIFHMHW 558 (573)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~al~~~~~~~ 558 (573)
+..+..+.++..++.++.|.+.|-...
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 466777788888899999999987654
No 321
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=83.88 E-value=3.7 Score=38.55 Aligned_cols=91 Identities=15% Similarity=0.059 Sum_probs=64.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHh----cCC---CHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCcC--c-----
Q 008244 473 QAYKDKQWLKAISFYTEAIKL----NGN---NATYYSNRAAAYLESGS-------FLQAEADCTKAINLDKK--V----- 531 (573)
Q Consensus 473 ~~~~~~~~~~Ai~~y~~ai~~----~p~---~~~~~~n~a~~~~~l~~-------~~~Al~~~~~al~l~p~--~----- 531 (573)
.+.....+++|++.|.-||-. ..+ -+.++..+|=+|-.+++ +..|++.|.+|++.... .
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 334456677888887777742 111 25677777777777777 45677777777766532 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 532 RLICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
...|..|++...++.+++|.+.|.+.......
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 58888999999999999999999988765543
No 322
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=83.85 E-value=3.6 Score=35.67 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL 515 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~ 515 (573)
.....+++...+..|+|+-|.+..+.++..+|++..+..-++.+|.+++.-.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 4556778888999999999999999999999999999999999987776543
No 323
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=83.54 E-value=47 Score=36.05 Aligned_cols=135 Identities=13% Similarity=0.053 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHH-HHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----------
Q 008244 429 FLLDTVQNMYASLQ-EQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----------- 496 (573)
Q Consensus 429 ~ll~~a~~le~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~----------- 496 (573)
....++.-+|.... +.++..+.......-..-.+.++.|.+-|...++.++++.|+...++|...-..
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 35566666665432 233444544444444444567889999999999999999999999988754211
Q ss_pred -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 497 -------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 497 -------~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
+...|...+.....+|-++..-..|++.+.|.--.+ .....|..++....++++.+.|++-.++-++
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 246677777777788888888889999988874442 4455566677778889999999988876653
No 324
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=83.30 E-value=3 Score=31.15 Aligned_cols=31 Identities=26% Similarity=0.295 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~ 493 (573)
.+..+.+.|..+-+.|+|++|+++|.++++.
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3555666677777777777777777666643
No 325
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=83.13 E-value=8.2 Score=29.36 Aligned_cols=49 Identities=14% Similarity=0.026 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCcCcH-HHHHHHHHHHHHHHHH
Q 008244 500 YYSNRAAAYLESGSFLQAEADCTKA-------INLDKKVR-LICAEAQQERCLDITR 548 (573)
Q Consensus 500 ~~~n~a~~~~~l~~~~~Al~~~~~a-------l~l~p~~~-~~~~~~~~~~~~~~~~ 548 (573)
-|..+|.-+-+.|++.+|+.+|+++ ++..|+.. ....+..+..++++.+
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae 64 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIE 64 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666666655 55678874 3334555555555544
No 326
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.67 E-value=4.7 Score=35.62 Aligned_cols=71 Identities=8% Similarity=-0.183 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
......+.+......+.++.+++...+...--+.|+.+..-.--|..++..|+|.+|+..++.+.+-.|.+
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~ 77 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF 77 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 45577788889999999999999999998889999999999999999999999999999999988888876
No 327
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=82.66 E-value=19 Score=42.46 Aligned_cols=82 Identities=18% Similarity=0.041 Sum_probs=36.8
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHHHHHHHH
Q 008244 475 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---RLICAEAQQERCLDITRRQL 551 (573)
Q Consensus 475 ~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~al 551 (573)
-+.+++++|.+.|++-++.--+....|...+..+++.++-++|-....+||+--|.. ...-..++.....+..+++-
T Consensus 1541 ~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGR 1620 (1710)
T KOG1070|consen 1541 EKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGR 1620 (1710)
T ss_pred HHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhH
Confidence 334444444444444444444444445555555554444444444555554444442 12222233333334444444
Q ss_pred HHHhh
Q 008244 552 KIFHM 556 (573)
Q Consensus 552 ~~~~~ 556 (573)
..|+-
T Consensus 1621 tlfEg 1625 (1710)
T KOG1070|consen 1621 TLFEG 1625 (1710)
T ss_pred HHHHH
Confidence 44443
No 328
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=81.96 E-value=3.5 Score=31.52 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~ 493 (573)
.+..+..++..+=+.|+|++|+.+|.++|+.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4666777777888888888888888777764
No 329
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=81.94 E-value=2.7 Score=41.11 Aligned_cols=46 Identities=24% Similarity=0.262 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008244 483 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (573)
Q Consensus 483 Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~ 528 (573)
|..+|.+|+.+.|++...|+.+|..+...++.-+|+-+|-+++-..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~ 46 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR 46 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcC
Confidence 6788999999999999999999999999999999999999988654
No 330
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=81.69 E-value=33 Score=38.60 Aligned_cols=97 Identities=15% Similarity=0.016 Sum_probs=74.0
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-- 531 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~-----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-- 531 (573)
.....++..--.+.+....+++++|++..+.+++.-|.+ ..++.+.|.+..-.|++.+|+....++.++.-.+
T Consensus 453 ~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~ 532 (894)
T COG2909 453 QGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV 532 (894)
T ss_pred hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc
Confidence 334456666668888899999999999999999987765 5889999999999999999999999998886543
Q ss_pred -----HHHHHHHHHHHHHH--HHHHHHHHHh
Q 008244 532 -----RLICAEAQQERCLD--ITRRQLKIFH 555 (573)
Q Consensus 532 -----~~~~~~~~~~~~~~--~~~~al~~~~ 555 (573)
...+.++++....| .+++..+.|.
T Consensus 533 ~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~ 563 (894)
T COG2909 533 YHLALWSLLQQSEILEAQGQVARAEQEKAFN 563 (894)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 24455566666666 4444444444
No 331
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.67 E-value=28 Score=34.02 Aligned_cols=58 Identities=7% Similarity=-0.076 Sum_probs=44.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH---HHHHHHHHHHHHH
Q 008244 488 TEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR---LICAEAQQERCLD 545 (573)
Q Consensus 488 ~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~---~~~~~~~~~~~~~ 545 (573)
.+.+..+|++..+-+.+|..|...|++++|++.+-..++.|-.+. .....-++...++
T Consensus 226 ~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 226 QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 334456899999999999999999999999999999999987652 3333344444443
No 332
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=81.06 E-value=15 Score=40.74 Aligned_cols=100 Identities=13% Similarity=0.039 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhcCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEA----------IKLNGN----------NATYYSNRAAAYLESGSFLQAEADCTK 523 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~a----------i~~~p~----------~~~~~~n~a~~~~~l~~~~~Al~~~~~ 523 (573)
-..|++.+..+-..++.+.|+++|+++ |.-+|. +..+|.--|+-+...|+.+.|+..|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 345778888888889999999999874 233443 345555568888899999999999987
Q ss_pred HHHhC---------------------cCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 524 AINLD---------------------KKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 524 al~l~---------------------p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
|-..- ..++ +-|.+++.++..+.+.+|.+.|-++-.++..
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnA 999 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNA 999 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 74331 1123 6677889999999999999998877665543
No 333
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=80.49 E-value=10 Score=28.96 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------C-cCc-HHHHHHHHHHHHHHHHHH
Q 008244 481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL-------D-KKV-RLICAEAQQERCLDITRR 549 (573)
Q Consensus 481 ~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l-------~-p~~-~~~~~~~~~~~~~~~~~~ 549 (573)
..|++...+|++.| +.|+|++|+..|.+++++ . ++. ..-..+..+..++++.+.
T Consensus 4 ~~Ai~~a~~Ave~D---------------~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~ 66 (76)
T cd02681 4 RDAVQFARLAVQRD---------------QEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQA 66 (76)
T ss_pred HHHHHHHHHHHHHH---------------HccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 35666666666665 566677776666666543 2 222 222226666666665544
No 334
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.76 E-value=7.6 Score=40.32 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=48.3
Q ss_pred ccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 008244 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE 510 (573)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~ 510 (573)
....+..+.+++-|..|...|+...|.+||.++++..-.++.+|.+++.|.+.
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34456688999999999999999999999999999999999999999999874
No 335
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=79.52 E-value=4 Score=31.07 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~ 493 (573)
+.+..+..+|...=..|+|++|++.|.++|+.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 45666777777777788888888888888775
No 336
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=79.23 E-value=8.1 Score=44.44 Aligned_cols=103 Identities=15% Similarity=0.121 Sum_probs=66.1
Q ss_pred cChHHHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 459 NQKQSAEIAKEKGNQAYKD----K---QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~----~---~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
...+--++.+..|..+..+ + .|.+|+..|++. --.|.-+.=|...|.+|.++++|+|-++++..|++..|+.
T Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (932)
T PRK13184 507 GRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQH 585 (932)
T ss_pred CcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCC
Confidence 3344567778888877654 2 456666666542 2346677888999999999999999999999999999888
Q ss_pred HHHHHHH-----HHHHHH-HHHHHHHHHHhhccccCC
Q 008244 532 RLICAEA-----QQERCL-DITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 532 ~~~~~~~-----~~~~~~-~~~~~al~~~~~~~~~~~ 562 (573)
+..-+.. +.++.. ..-..++..--.+...-|
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (932)
T PRK13184 586 PEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAP 622 (932)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 5332222 223332 334444454445554444
No 337
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.13 E-value=34 Score=35.78 Aligned_cols=95 Identities=22% Similarity=0.079 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhc---CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCc-
Q 008244 462 QSAEIAKEKGNQAYK-DKQWLKAISFYTEAIKLN---GNN----ATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKV- 531 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~-~~~~~~Ai~~y~~ai~~~---p~~----~~~~~n~a~~~~~l~-~~~~Al~~~~~al~l~p~~- 531 (573)
-++..+.++|..++. .++++.|..++++|..+. |+. ..++.-++.+|.... .+..|-.-.++|+++..++
T Consensus 44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p 123 (629)
T KOG2300|consen 44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP 123 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence 456778889988754 689999999999998764 333 477888999999988 7889999999999998664
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhh
Q 008244 532 ----RLICAEAQQERCLDITRRQLKIFHM 556 (573)
Q Consensus 532 ----~~~~~~~~~~~~~~~~~~al~~~~~ 556 (573)
+..+.+++.+....++.-|++.+..
T Consensus 124 ~wsckllfQLaql~~idkD~~sA~elLav 152 (629)
T KOG2300|consen 124 YWSCKLLFQLAQLHIIDKDFPSALELLAV 152 (629)
T ss_pred hhhHHHHHHHHHHHhhhccchhHHHHHhc
Confidence 5777888888888888888877553
No 338
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=78.61 E-value=9.2 Score=36.83 Aligned_cols=64 Identities=8% Similarity=0.031 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAI 525 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al 525 (573)
.......+.|..|++.|+|++|++.|+.+...--.+ ......+..|+.++|+.++.+..+-+.+
T Consensus 176 ~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 176 MASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345556789999999999999999999997654332 5777888999999999999988876654
No 339
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=78.16 E-value=8.5 Score=39.00 Aligned_cols=71 Identities=18% Similarity=0.043 Sum_probs=53.5
Q ss_pred ChHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH-----------------HH
Q 008244 460 QKQSAEIAKEKGNQAYKD------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF-----------------LQ 516 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~------~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~-----------------~~ 516 (573)
....+..+..+|.-.... +++++++..|+++++++|+...+|++.|..+.++=+. ..
T Consensus 248 ~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (352)
T PF02259_consen 248 KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQ 327 (352)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHH
Confidence 345566777777777666 8999999999999999999999999999888654222 23
Q ss_pred HHHHHHHHHHhCcC
Q 008244 517 AEADCTKAINLDKK 530 (573)
Q Consensus 517 Al~~~~~al~l~p~ 530 (573)
|+..|-+++.+.++
T Consensus 328 ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 328 AIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHhhCCC
Confidence 66666666666665
No 340
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=77.89 E-value=10 Score=38.68 Aligned_cols=77 Identities=10% Similarity=0.001 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCc
Q 008244 463 SAEIAKEKGNQAYK---DKQWLKAISFYTEAI-KLNGNNATYYSNRAAAYLE---------SGSFLQAEADCTKAINLDK 529 (573)
Q Consensus 463 ~~~~~~~~g~~~~~---~~~~~~Ai~~y~~ai-~~~p~~~~~~~n~a~~~~~---------l~~~~~Al~~~~~al~l~p 529 (573)
.....++.+.++.+ .|+.++|++.+.+++ +..+.+++.|.-.|.+|-. ....++|+..|.++.+++|
T Consensus 178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~ 257 (374)
T PF13281_consen 178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP 257 (374)
T ss_pred chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence 34556677888877 899999999999955 4556788999999998864 2247899999999999999
Q ss_pred CcHHHHHHHH
Q 008244 530 KVRLICAEAQ 539 (573)
Q Consensus 530 ~~~~~~~~~~ 539 (573)
+.+.+.+.+.
T Consensus 258 ~~Y~GIN~At 267 (374)
T PF13281_consen 258 DYYSGINAAT 267 (374)
T ss_pred cccchHHHHH
Confidence 8754444443
No 341
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=77.54 E-value=19 Score=36.47 Aligned_cols=92 Identities=11% Similarity=0.026 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA--YLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ 540 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~--~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~ 540 (573)
+..+.-.+....-.|+|++|.+.|+.-+. +|.. ..+--||.. -.++|.++.|.++.+++-++.|.-. +.....+.
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~ 197 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEA 197 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 55555566666667777777777765543 2221 111222222 2356777777777777777777653 33233333
Q ss_pred HHHHHHHHHHHHHHhhc
Q 008244 541 ERCLDITRRQLKIFHMH 557 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~ 557 (573)
....++|+.+++..+..
T Consensus 198 r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 198 RCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHhcCChHHHHHHHHHH
Confidence 33446666666665543
No 342
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=77.21 E-value=17 Score=39.15 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhCcCc--H-HH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG--NNATYYS---NRAAAYLESGSFLQAEADCTKAINLDKKV--R-LI 534 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p--~~~~~~~---n~a~~~~~l~~~~~Al~~~~~al~l~p~~--~-~~ 534 (573)
.++...|-++.+-...-|+++.+.|++.|.+-+ +-..+|+ ......+.-.+.+.|...|++||+..|-. + .+
T Consensus 510 TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiy 589 (835)
T KOG2047|consen 510 TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIY 589 (835)
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 366677888888888889999999999999864 4444444 34444444557899999999999988754 2 55
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Q 008244 535 CAEAQQERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 535 ~~~~~~~~~~~~~~~al~~~~~~~~ 559 (573)
...++..+-.|-.+.++..|+++..
T Consensus 590 LlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 590 LLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 5557777777888888888887653
No 343
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=77.14 E-value=13 Score=38.81 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCc
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKV 531 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~-~~~Al~~~~~al~l~p~~ 531 (573)
...|.+-..-.-+.+.|.+--..|.++|...|+++.+|..-|.-.+..+. .+.|...+.++|+.+|+.
T Consensus 105 ~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npds 173 (568)
T KOG2396|consen 105 VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDS 173 (568)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCC
Confidence 45555544444445559999999999999999999999999999988887 899999999999999997
No 344
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=76.93 E-value=24 Score=35.64 Aligned_cols=82 Identities=18% Similarity=0.004 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCC--------------------------------CHHHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGN--------------------------------NATYYSNRAAAY 508 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~--~p~--------------------------------~~~~~~n~a~~~ 508 (573)
.+....+.+..+...|+..+|+...+..++. ... .+.+++.+|...
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777776661 000 024445555555
Q ss_pred HHc------CCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHH
Q 008244 509 LES------GSFLQAEADCTKAINLDKKV-RLICAEAQQERCL 544 (573)
Q Consensus 509 ~~l------~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~ 544 (573)
..+ ++++++++.|+++++++|++ +.++..+.....+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 555 66677777777777777765 4555555555533
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.81 E-value=9.5 Score=37.03 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008244 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523 (573)
Q Consensus 468 ~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~ 523 (573)
...+..+.+.|.+.+|++..++++.++|-+...|.-+=..+..+|+--.+.+.|++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 34556667788888888888888888888888888888888888887777777665
No 346
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=76.11 E-value=3.4 Score=38.53 Aligned_cols=57 Identities=12% Similarity=-0.004 Sum_probs=50.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 507 AYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 507 ~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
...+.++.+.|.+.|.+++++.|++. .+++.++..+.-+.+..|.+.|+..++++|.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 44567899999999999999999995 6777789888889999999999999999984
No 347
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=75.81 E-value=15 Score=37.54 Aligned_cols=71 Identities=13% Similarity=0.045 Sum_probs=45.1
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------cCC------------C---HHHHHHHHHHHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------------NGN------------N---ATYYSNRAAAYLE 510 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~--------------~p~------------~---~~~~~n~a~~~~~ 510 (573)
+|-.+..+.+.+.++.++|+++.|.+..++||-. ++. | ..+.+.....+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 4455666777777777777777777777777621 111 1 2444555566666
Q ss_pred cCCHHHHHHHHHHHHHhCcC
Q 008244 511 SGSFLQAEADCTKAINLDKK 530 (573)
Q Consensus 511 l~~~~~Al~~~~~al~l~p~ 530 (573)
.|-+.-|++.|+-.+.+||.
T Consensus 116 RG~~rTAlE~~KlLlsLdp~ 135 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPD 135 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCC
Confidence 77777777777777777777
No 348
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=75.22 E-value=25 Score=35.92 Aligned_cols=75 Identities=15% Similarity=0.089 Sum_probs=62.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------h-----Cc------------Cc----HHHHHHH
Q 008244 489 EAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN---------L-----DK------------KV----RLICAEA 538 (573)
Q Consensus 489 ~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~---------l-----~p------------~~----~~~~~~~ 538 (573)
..|+.+|-+...+..++.++...|+++.|.+..++||- . ++ .| .++++..
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 45789999999999999999999999999999888852 1 11 12 3667777
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCC
Q 008244 539 QQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 539 ~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
+.....|.++-|++..+.-++++|.
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~ 135 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPD 135 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCC
Confidence 8788889999999999999999997
No 349
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=74.97 E-value=18 Score=30.23 Aligned_cols=92 Identities=20% Similarity=0.128 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHH----H
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTKA----I 525 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---------------~~~~~n~a~~~~~l~~~~~Al~~~~~a----l 525 (573)
+++..+|+..++.+++-.+|-+|++|+.+..+- ...-.|+|.-+..+|+.+-.+++.+-| +
T Consensus 2 e~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vl 81 (140)
T PF10952_consen 2 EKHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVL 81 (140)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999653221 355678999999999999999998755 5
Q ss_pred HhCcCcHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008244 526 NLDKKVRLICAEAQQERCLDITRRQLKIFHMH 557 (573)
Q Consensus 526 ~l~p~~~~~~~~~~~~~~~~~~~~al~~~~~~ 557 (573)
.|-|+-+-.-+- ..-..+|.-+.||-.|-++
T Consensus 82 tLiPQCp~~~C~-afi~sLGCCk~ALl~F~KR 112 (140)
T PF10952_consen 82 TLIPQCPNTECE-AFIDSLGCCKKALLDFMKR 112 (140)
T ss_pred HhccCCCCcchH-HHHHhhhccHHHHHHHHHh
Confidence 566663200000 1123345555555555544
No 350
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=74.78 E-value=7.2 Score=29.70 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~ 492 (573)
.+..+..+|...-+.|+|++|+.+|.++++
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666677777777777777777766654
No 351
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.49 E-value=4.3 Score=23.58 Aligned_cols=24 Identities=4% Similarity=-0.164 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYT 488 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~ 488 (573)
.....+|..+...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356789999999999999998875
No 352
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=74.01 E-value=67 Score=32.90 Aligned_cols=100 Identities=10% Similarity=-0.010 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCc-Cc-HHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL----NGNNATYYSNRAAAYLE---SGSFLQAEADCTKAINLDK-KV-RLI 534 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~----~p~~~~~~~n~a~~~~~---l~~~~~Al~~~~~al~l~p-~~-~~~ 534 (573)
.....+.-..|...++|+.-|+..+..-.+ -++.....+..|.++-+ .|+.++|++.+..++..+. .+ ..+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 444556666778888988888776655444 34566777888999998 9999999999999766553 33 244
Q ss_pred HHHHHHHHH---------HHHHHHHHHHHhhccccCCC
Q 008244 535 CAEAQQERC---------LDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 535 ~~~~~~~~~---------~~~~~~al~~~~~~~~~~~~ 563 (573)
+..|.+++- .+..++|...|.+.+..+|.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 444433322 24688899999999998863
No 353
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=73.95 E-value=8.1 Score=29.43 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~ 492 (573)
.+..+..+|...-+.|+|++|+.+|.++|+
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455666666666677777777777766554
No 354
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.14 E-value=48 Score=28.99 Aligned_cols=66 Identities=11% Similarity=-0.080 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
.+.+.........+..++.......=-+.|+.+..-.--+..++..|+|.+|++.+++..+-.+..
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~ 77 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP 77 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc
Confidence 334444444445555555555554445555555555555555555555555555555555554443
No 355
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=72.87 E-value=9.2 Score=22.85 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 008244 478 KQWLKAISFYTEAIKLNGNNATYYSNRAA 506 (573)
Q Consensus 478 ~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~ 506 (573)
|+++.|...|+++++..|.+..+|.....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677888888888888888888776543
No 356
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.37 E-value=10 Score=39.19 Aligned_cols=95 Identities=8% Similarity=0.057 Sum_probs=66.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHH
Q 008244 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDIT 547 (573)
Q Consensus 469 ~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~ 547 (573)
-.+.+....|+|++|....+.+-..-..-..+..-+-.-+++++++++|+.-....|.-+-... ..-..+.....++-+
T Consensus 328 l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~ 407 (831)
T PRK15180 328 LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLF 407 (831)
T ss_pred HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHH
Confidence 3456667789999998887766655444444444555677899999999998888887654443 222223445566778
Q ss_pred HHHHHHHhhccccCCC
Q 008244 548 RRQLKIFHMHWSWSPP 563 (573)
Q Consensus 548 ~~al~~~~~~~~~~~~ 563 (573)
++++-++++-+.++|+
T Consensus 408 d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 408 DKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHHHhccCCh
Confidence 8888888888888875
No 357
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=72.26 E-value=66 Score=31.01 Aligned_cols=111 Identities=10% Similarity=0.002 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCcCc-HHHHHH
Q 008244 461 KQSAEIAKEKGNQAYK-DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL-QAEADCTKAINLDKKV-RLICAE 537 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~-~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~-~Al~~~~~al~l~p~~-~~~~~~ 537 (573)
|.+-..|.-+-.++-. ..+..+-++..++.++-+|.|...|..|=.+...++++. .-++.+++++..|.++ .+...+
T Consensus 74 pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshR 153 (318)
T KOG0530|consen 74 PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHR 153 (318)
T ss_pred cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHH
Confidence 3445555444444433 244667788888888889999999988888888888887 7888888888888665 354444
Q ss_pred HHHHHHHHHHHH----HHHHHhhccccCCCCCCCCccc
Q 008244 538 AQQERCLDITRR----QLKIFHMHWSWSPPIKEHPFLL 571 (573)
Q Consensus 538 ~~~~~~~~~~~~----al~~~~~~~~~~~~~~~~~~~~ 571 (573)
.=+....+.++. +.+.++.....|..+-..=|||
T Consensus 154 qW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi 191 (318)
T KOG0530|consen 154 QWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVI 191 (318)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEE
Confidence 434444433444 4444555555556666555555
No 358
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=71.87 E-value=9.1 Score=29.17 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~ 492 (573)
.+..+..+|..+-+.|+|++|+.+|.++++
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555566666666666666666655554
No 359
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.99 E-value=17 Score=33.51 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLESGSFLQA 517 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~----~~~~~~n~a~~~~~l~~~~~A 517 (573)
+.++....+|.-|. +.+.++|+..|.++|++... ++..+..++.+|++++++++|
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34666677776655 67889999999999998654 589999999999999999987
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.50 E-value=8.5 Score=25.87 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 501 YSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 501 ~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
.+++|.+|..+|+++.|....++++. ..++
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~-~~~~ 31 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE-EGDE 31 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH-cCCH
Confidence 36899999999999999999999995 4443
No 361
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=70.45 E-value=23 Score=29.14 Aligned_cols=52 Identities=27% Similarity=0.323 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS 513 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~ 513 (573)
++......+|...+-.|||++|.+...++-+..++....|.--+.+-..+||
T Consensus 57 ~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 57 RKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 5678888999999999999999999999988877777777777777666664
No 362
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=70.01 E-value=11 Score=28.12 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (573)
Q Consensus 481 ~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~ 526 (573)
+.|+...++|++.+ +.|+|++|+..|.++++
T Consensus 3 ~~A~~~~~~Av~~D---------------~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 3 DKAIELIKKAVEAD---------------EAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHH---------------HTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HCCCHHHHHHHHHHHHH
Confidence 45555555555554 56777777777776654
No 363
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=69.89 E-value=26 Score=35.25 Aligned_cols=79 Identities=8% Similarity=-0.052 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHH
Q 008244 484 ISFYTEAIKLNGNNATYYSNRAAAYLESGS------------FLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQ 550 (573)
Q Consensus 484 i~~y~~ai~~~p~~~~~~~n~a~~~~~l~~------------~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~a 550 (573)
...|++.++.+|.+..+|..+....-++-. .+.-+..+++||+.+|++. .+..+.+....+...++.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 456899999999999999999877766543 4677889999999999874 333333333333233333
Q ss_pred HHHHhhccccCC
Q 008244 551 LKIFHMHWSWSP 562 (573)
Q Consensus 551 l~~~~~~~~~~~ 562 (573)
.+.++.....+|
T Consensus 85 ~~~we~~l~~~~ 96 (321)
T PF08424_consen 85 AKKWEELLFKNP 96 (321)
T ss_pred HHHHHHHHHHCC
Confidence 333444443333
No 364
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=69.64 E-value=11 Score=28.56 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~ 492 (573)
+..+...|...-+.|+|++|+.+|.++++
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455566666666777777666655554
No 365
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.48 E-value=55 Score=33.56 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=48.6
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCcCc
Q 008244 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG--SFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 476 ~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~--~~~~Al~~~~~al~l~p~~ 531 (573)
++.-.++-+..-..+|+++|++..+|+.|.-++.+.. ++..=++.|+++++.||.+
T Consensus 87 k~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RN 144 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRN 144 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCccc
Confidence 3345677788888999999999999999999999876 4789999999999999987
No 366
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=68.91 E-value=14 Score=40.87 Aligned_cols=80 Identities=15% Similarity=0.083 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCcCc----------H-HHH
Q 008244 482 KAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKA----------INLDKKV----------R-LIC 535 (573)
Q Consensus 482 ~Ai~~y~~ai~~~p~~-----~~~~~n~a~~~~~l~~~~~Al~~~~~a----------l~l~p~~----------~-~~~ 535 (573)
+++..+++|+++.... -..|+|.|.-+...++.+.|+++|+++ |+-+|.. + .+.
T Consensus 837 Qs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~ 916 (1416)
T KOG3617|consen 837 QSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYS 916 (1416)
T ss_pred HhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHH
Confidence 3334445566654432 467889999999999999999999874 3334442 1 222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccC
Q 008244 536 AEAQQERCLDITRRQLKIFHMHWSWS 561 (573)
Q Consensus 536 ~~~~~~~~~~~~~~al~~~~~~~~~~ 561 (573)
--++..+..+..+.|+..|+.+-.+-
T Consensus 917 WWgqYlES~GemdaAl~~Y~~A~D~f 942 (1416)
T KOG3617|consen 917 WWGQYLESVGEMDAALSFYSSAKDYF 942 (1416)
T ss_pred HHHHHHhcccchHHHHHHHHHhhhhh
Confidence 22566666688888888888765543
No 367
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=68.53 E-value=14 Score=31.56 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAA 506 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~ 506 (573)
-+..+-++..+++.++|+.++.+.+..|+.+|+|..+..-.-.
T Consensus 71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ 113 (149)
T KOG3364|consen 71 RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET 113 (149)
T ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 4556778888999999999999999999999999877654433
No 368
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=68.07 E-value=16 Score=43.01 Aligned_cols=144 Identities=10% Similarity=-0.051 Sum_probs=94.3
Q ss_pred EEEeccCCcHHHHHHHHHHHHHH-HHHHHhhhhcCCCCCCc-cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 008244 419 SFIARHGGDRFLLDTVQNMYASL-QEQADIATKSKLSTNTF-NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN 496 (573)
Q Consensus 419 q~~~~~~~d~~ll~~a~~le~~l-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~ 496 (573)
++.+.|++.-.+++.++..-+.- .+.++....+.+...+. +..++...|...-|....-|.-+.-.+.|++|-+.+ +
T Consensus 1450 lvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d 1528 (1710)
T KOG1070|consen 1450 LVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D 1528 (1710)
T ss_pred HHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c
Confidence 44555555555677665544332 33344445555444433 333445556555555555566667777788888876 4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 497 ~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
....|..++-+|.+.+++++|.+.+++.++.-.+. +.+...+..+...+..+++-..+.++++--|.
T Consensus 1529 ~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1529 AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 56888899999999999999999999999987754 35555566666666666666677776666564
No 369
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.00 E-value=78 Score=33.68 Aligned_cols=73 Identities=14% Similarity=-0.012 Sum_probs=62.7
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcC
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---GN----NATYYSNRAAAYLESGS-FLQAEADCTKAINLDKK 530 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~---p~----~~~~~~n~a~~~~~l~~-~~~Al~~~~~al~l~p~ 530 (573)
+..+..-.+.-+|.++.+.|+-.+|..+|...++.. .+ -+.++|.+|..|.+++. .+++.....+|-+...+
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 445667888899999999999999999999988542 12 27999999999999999 99999999999998877
Q ss_pred c
Q 008244 531 V 531 (573)
Q Consensus 531 ~ 531 (573)
|
T Consensus 524 Y 524 (546)
T KOG3783|consen 524 Y 524 (546)
T ss_pred c
Confidence 6
No 370
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=67.86 E-value=12 Score=32.53 Aligned_cols=68 Identities=12% Similarity=0.021 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~ 530 (573)
+..+.-.-.|..+...|+|.+|+..+++..+-.+..+..-.-++.|+.-+++..= -.+.+++++-+++
T Consensus 42 ~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~W-r~~A~~~le~~~~ 109 (153)
T TIGR02561 42 NLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEW-HVHADEVLARDAD 109 (153)
T ss_pred CccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHH-HHHHHHHHHhCCC
Confidence 4455556688899999999999999999999999989888889999999998532 1234556666544
No 371
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=67.12 E-value=89 Score=32.27 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhC
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKL-NGNN-ATYYSNRAAAYLE--SGSFLQAEADCTKAINLD 528 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~-~p~~-~~~~~n~a~~~~~--l~~~~~Al~~~~~al~l~ 528 (573)
.....++..+++.++|..|.+.++..++. .++. ...+.+++.+|.. .-+|++|.+.+++.++..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 34566788899999999999999999985 4433 4677778777765 668999999999987763
No 372
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=66.06 E-value=13 Score=28.39 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008244 466 IAKEKGNQAYKDKQWLKAISFYTEAI 491 (573)
Q Consensus 466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai 491 (573)
.+..++...-+.|+|++|+.+|.++|
T Consensus 8 ~l~~~Ave~d~~~~y~eA~~~Y~~~i 33 (75)
T cd02677 8 ELIRLALEKEEEGDYEAAFEFYRAGV 33 (75)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 373
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=65.70 E-value=13 Score=28.25 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 480 ~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
.++|+...++|++.| ..|+|++|++.|..|+++
T Consensus 3 l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHH
Confidence 467777777776665 578889999988888775
No 374
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=65.62 E-value=40 Score=30.54 Aligned_cols=60 Identities=10% Similarity=0.009 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--H--HHHHHHHHHHHHHHHHHHHHHHhhc
Q 008244 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV--R--LICAEAQQERCLDITRRQLKIFHMH 557 (573)
Q Consensus 498 ~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~--~--~~~~~~~~~~~~~~~~~al~~~~~~ 557 (573)
-.++..+|.-|.+.|++++|++.|.++.+..... + ..+...++....+.+.......+++
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4789999999999999999999999998876442 2 4444444444445555555444443
No 375
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=65.48 E-value=64 Score=27.69 Aligned_cols=64 Identities=17% Similarity=0.055 Sum_probs=41.5
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 464 AEIAKEKGNQA-YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 464 ~~~~~~~g~~~-~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
...|.+++... .++++-++--+.++...+-+..++..+..+|.+|-++|+-.++-+..++|++.
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 44566666544 45666555555566655555678999999999999999999999999998874
No 376
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=64.99 E-value=22 Score=21.53 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 008244 483 AISFYTEAIKLNGNNATYYSNRAAAYLES 511 (573)
Q Consensus 483 Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l 511 (573)
.++..+++|+.+|.+..+|..|--++.++
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 45667788899999999998887776554
No 377
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=64.95 E-value=67 Score=40.35 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=85.9
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC--------
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KK-------- 530 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~-p~-------- 530 (573)
+..-.+.|.+.+....+.|+++-|-...-+|.+.. -+.++..+|..+...|+-..|+...++.++++ |+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 45668889999999999999999999998888876 78899999999999999999999999999876 44
Q ss_pred --cH--HHHHHH-----HHHHHH--HHHHHHHHHHhhccccCCCCCCCCccc
Q 008244 531 --VR--LICAEA-----QQERCL--DITRRQLKIFHMHWSWSPPIKEHPFLL 571 (573)
Q Consensus 531 --~~--~~~~~~-----~~~~~~--~~~~~al~~~~~~~~~~~~~~~~~~~~ 571 (573)
.+ ..+.++ +..... -....-++.|+.+....|.+-+.+|+|
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l 1795 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHL 1795 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeH
Confidence 11 122212 111111 345667888999999999888888776
No 378
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=64.69 E-value=19 Score=35.02 Aligned_cols=62 Identities=19% Similarity=0.110 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHH-------HHHHHHHHHHhhcccc
Q 008244 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCL-------DITRRQLKIFHMHWSW 560 (573)
Q Consensus 499 ~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~-------~~~~~al~~~~~~~~~ 560 (573)
..+...+..|.+.|.+.+|++.+++++++||-+. ....+-..+..+ ..++...+.++.-+.+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi 349 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGI 349 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCC
Confidence 3445568889999999999999999999999762 222222333333 4455555555544443
No 379
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=64.24 E-value=71 Score=30.81 Aligned_cols=72 Identities=8% Similarity=0.009 Sum_probs=63.2
Q ss_pred cChHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~-~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~ 530 (573)
++|++-+.|..+-...-..|++. .-++.....|..+..+..+|..|-=|....+.|++-+.++.+.|+.|-.
T Consensus 107 ~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~ 179 (318)
T KOG0530|consen 107 DNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR 179 (318)
T ss_pred hCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Confidence 44588899888888888888888 8888999999999999999999999999999999999999999998743
No 380
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=64.12 E-value=29 Score=34.14 Aligned_cols=69 Identities=13% Similarity=0.156 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN-RAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n-~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
.+..|.+-.+-..+.+-|.+--..|.++++..|.++.+|.. -+.=|...++++.+..-+.++|++||++
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 34455555555556677888888899999999999999986 4455677889999999999999999987
No 381
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=64.03 E-value=42 Score=35.27 Aligned_cols=83 Identities=8% Similarity=0.067 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH-HHHHHHHH-HHHHHHHHhhcccc
Q 008244 483 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEA-QQERCLDI-TRRQLKIFHMHWSW 560 (573)
Q Consensus 483 Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~-~~~~~~~~-~~~al~~~~~~~~~ 560 (573)
-...|+.|+..-+.+..+|.+-..-..+.+.+.+--..|.++|.++|++..++-.+ ..+.-.+. .+.+-..|.+.+.+
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 34568888988889999999987766677779999999999999999997554444 32222233 78888888888888
Q ss_pred CCCCC
Q 008244 561 SPPIK 565 (573)
Q Consensus 561 ~~~~~ 565 (573)
+|..+
T Consensus 170 npdsp 174 (568)
T KOG2396|consen 170 NPDSP 174 (568)
T ss_pred CCCCh
Confidence 88543
No 382
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=63.93 E-value=16 Score=37.78 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=41.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 470 KGNQAYKDKQWLKAISFYTEAIKLN---------GNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (573)
Q Consensus 470 ~g~~~~~~~~~~~Ai~~y~~ai~~~---------p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~ 526 (573)
+...+.-.|+|..|++..+. |+++ +-+...++..|.||+-+++|.+|++.|...|-
T Consensus 128 LlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677899888887543 2222 23468888899999999999999999998864
No 383
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=63.85 E-value=1.9e+02 Score=30.38 Aligned_cols=55 Identities=4% Similarity=-0.145 Sum_probs=47.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244 505 AAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 505 a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~al~~~~~~~~ 559 (573)
|.-++..|+|.++.-++.-..+++|...++...|.+......|++|+..++.-+.
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 4456689999999999999999999767777778888888999999999987654
No 384
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=63.82 E-value=30 Score=33.97 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----cCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 008244 464 AEIAKEKGNQAYKDK-QWLKAISFYTEAIKL----NGNN----------ATYYSNRAAAYLESGSFLQAEADCTKAINL- 527 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~-~~~~Ai~~y~~ai~~----~p~~----------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l- 527 (573)
+..+++-|..+++++ +|++|+..+++|.++ .... ...+..++.+|+..+.++...+ |.++++.
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l 113 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNALRLL 113 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHH
Confidence 556788888888998 999999999998887 2211 3667778888888887654433 3333332
Q ss_pred ---CcCcH-HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008244 528 ---DKKVR-LICAEAQQERCLDITRRQLKIFHMHW 558 (573)
Q Consensus 528 ---~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~ 558 (573)
.|+.. .++.+-++.......++..+.+....
T Consensus 114 ~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 114 ESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 35543 33344455554444555555554444
No 385
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=63.78 E-value=14 Score=28.41 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 478 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (573)
Q Consensus 478 ~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~ 526 (573)
+.|++|.++.++||..+. .|+.++|+..|+++++
T Consensus 3 ~~~~~A~~~I~kaL~~dE---------------~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 3 GYYKQAFEEISKALRADE---------------WGDKEQALAHYRKGLR 36 (79)
T ss_pred hHHHHHHHHHHHHhhhhh---------------cCCHHHHHHHHHHHHH
Confidence 345666666666666553 3555555555555544
No 386
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=63.75 E-value=42 Score=32.25 Aligned_cols=56 Identities=13% Similarity=0.062 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-------HHHHHHHHHHHHHHHHHHHHHH
Q 008244 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-------RLICAEAQQERCLDITRRQLKI 553 (573)
Q Consensus 498 ~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-------~~~~~~~~~~~~~~~~~~al~~ 553 (573)
..+-..+|.-|+++|+|++|++.++.++...... ..+....++...++..+..+..
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3555689999999999999999999997664332 2444455666666665555543
No 387
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=62.62 E-value=76 Score=34.86 Aligned_cols=73 Identities=10% Similarity=0.114 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 008244 437 MYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ 516 (573)
Q Consensus 437 le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~ 516 (573)
+...+.+..+....-.......++...-+++.+.|..+.....+++|.++|.+.=.. -|...||+.+.+|++
T Consensus 769 lr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~le~f~~ 840 (1189)
T KOG2041|consen 769 LRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRLELFGE 840 (1189)
T ss_pred HHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHHHhhhh
Confidence 333344444433322222334455566788999999999999999999999765332 345566666666654
Q ss_pred H
Q 008244 517 A 517 (573)
Q Consensus 517 A 517 (573)
-
T Consensus 841 L 841 (1189)
T KOG2041|consen 841 L 841 (1189)
T ss_pred H
Confidence 3
No 388
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=61.88 E-value=1.5e+02 Score=30.46 Aligned_cols=79 Identities=18% Similarity=0.157 Sum_probs=51.4
Q ss_pred HHHHHHhh-hhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----HHHHHHHHHH--HHcCC
Q 008244 441 LQEQADIA-TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----TYYSNRAAAY--LESGS 513 (573)
Q Consensus 441 l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~----~~~~n~a~~~--~~l~~ 513 (573)
+.+++... .+... +...++.+.+.-++-+|.+..-+.+|..|.+++.+|+...|++. .-..|..+|. +-+|+
T Consensus 224 lydqa~~lvsK~~~-pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~ge 302 (493)
T KOG2581|consen 224 LYDQADKLVSKSVY-PEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGE 302 (493)
T ss_pred HHHHHHHHhhcccC-ccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCC
Confidence 44444443 33333 33444458888899999999999999999999999999999853 1222333333 34666
Q ss_pred HHHHHHH
Q 008244 514 FLQAEAD 520 (573)
Q Consensus 514 ~~~Al~~ 520 (573)
+.+-...
T Consensus 303 iPers~F 309 (493)
T KOG2581|consen 303 IPERSVF 309 (493)
T ss_pred Ccchhhh
Confidence 6544333
No 389
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.58 E-value=39 Score=36.86 Aligned_cols=80 Identities=15% Similarity=0.043 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----HHHHHHH
Q 008244 479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLDKKVRLICAEAQQERCL----DITRRQL 551 (573)
Q Consensus 479 ~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~---~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~al 551 (573)
+++.|+..|.++-+.. ++.+.+++|.||..-. ++..|.+.|..|.+. ....+.++.+.++..- -..+.+.
T Consensus 308 d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G~~~A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-GHILAIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-CChHHHHHHHHHHHhCCCcCCCHHHHH
Confidence 4555555555555543 3444445555555433 345555555555443 2223334444333321 3455555
Q ss_pred HHHhhccccC
Q 008244 552 KIFHMHWSWS 561 (573)
Q Consensus 552 ~~~~~~~~~~ 561 (573)
..|+++....
T Consensus 385 ~~~k~aA~~g 394 (552)
T KOG1550|consen 385 AYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHcc
Confidence 5555555444
No 390
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.55 E-value=26 Score=33.71 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=44.8
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 475 YKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 475 ~~~~~~~~Ai~~y~~ai~~~p~~----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
++..+.++|+..|.+.+++.+.. ..++-..-.+++++++|++-+..|++.|..
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 35668999999999999999865 467777888899999999999999987653
No 391
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=61.38 E-value=1.1e+02 Score=32.23 Aligned_cols=93 Identities=14% Similarity=0.077 Sum_probs=75.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHHH
Q 008244 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL-DKKVRLICAEAQQERCLDI 546 (573)
Q Consensus 468 ~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l-~p~~~~~~~~~~~~~~~~~ 546 (573)
...-......|+...|-+....++...|.++..-.-++.++..+|.|+.++++..-+=+. ....++..++.+.+..+++
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh
Confidence 344455667899999999999999999999999999999999999999999988766543 3445677777777778899
Q ss_pred HHHHHHHHhhcccc
Q 008244 547 TRRQLKIFHMHWSW 560 (573)
Q Consensus 547 ~~~al~~~~~~~~~ 560 (573)
+++|+..-+..+.-
T Consensus 373 ~~~a~s~a~~~l~~ 386 (831)
T PRK15180 373 WREALSTAEMMLSN 386 (831)
T ss_pred HHHHHHHHHHHhcc
Confidence 99998887766643
No 392
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.58 E-value=1.1e+02 Score=32.30 Aligned_cols=97 Identities=18% Similarity=0.105 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCc-----
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-N--ATYYSNRAAAYLESGSFLQAEADCTKAIN-LDKKV----- 531 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~-~--~~~~~n~a~~~~~l~~~~~Al~~~~~al~-l~p~~----- 531 (573)
-..++.+.-+|.-...-+.|+.|...|..|.++-.. + +.+-.|+|..|++.++-+ ++.++++ +.|.+
T Consensus 364 ~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~e----d~y~~ld~i~p~nt~s~s 439 (629)
T KOG2300|consen 364 AHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAE----DLYKALDLIGPLNTNSLS 439 (629)
T ss_pred HhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHH----HHHHHHHhcCCCCCCcch
Confidence 345777777887778889999999999999987543 2 566678899999876654 3344444 34442
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008244 532 ------RLICAEAQQERCLDITRRQLKIFHMHWSWS 561 (573)
Q Consensus 532 ------~~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 561 (573)
..+|..|......+.+.+|-+..+.-++..
T Consensus 440 sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 440 SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 255666666666677888877777666554
No 393
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=60.35 E-value=70 Score=31.33 Aligned_cols=63 Identities=10% Similarity=-0.025 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244 497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 497 ~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~ 559 (573)
...++..++..+...++++.++...++.++++|-+. .+.+.-+.+...+....+++.|++.++
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 456677788899999999999999999999999984 555555666666666666666665554
No 394
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=60.15 E-value=1.1e+02 Score=36.25 Aligned_cols=102 Identities=17% Similarity=0.039 Sum_probs=80.8
Q ss_pred ccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008244 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529 (573)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~--------~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p 529 (573)
.+.++....+-+++.-.+..++...|+..+.++.++ .|.-.....|+++.++.+++++-|+++.+.|++++-
T Consensus 1009 ~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1009 KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 456778888999998889999999999999998875 466678889999999999999999999999999764
Q ss_pred Cc---------HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244 530 KV---------RLICAEAQQERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 530 ~~---------~~~~~~~~~~~~~~~~~~al~~~~~~~~ 559 (573)
.. ..+...++...+++.++.++......+.
T Consensus 1089 ~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1089 KVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred hhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 32 2445556777777777777766654443
No 395
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.10 E-value=2.5e+02 Score=30.33 Aligned_cols=107 Identities=8% Similarity=-0.000 Sum_probs=72.0
Q ss_pred CCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hcC----------------CCH---HHHHHHHHHHHH
Q 008244 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK-----LNG----------------NNA---TYYSNRAAAYLE 510 (573)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~-----~~p----------------~~~---~~~~n~a~~~~~ 510 (573)
.....+|-+...+.+.+...-.+|+.+-|-+...++|= ..| .|- .+.+.-=.-+.+
T Consensus 275 ~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~ 354 (665)
T KOG2422|consen 275 ILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQ 354 (665)
T ss_pred eeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHh
Confidence 34445588899999999999999999888888777772 112 221 222222233446
Q ss_pred cCCHHHHHHHHHHHHHhCcC-cH--------HHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008244 511 SGSFLQAEADCTKAINLDKK-VR--------LICAEAQQERCLDITRRQLKIFHMHWSWS 561 (573)
Q Consensus 511 l~~~~~Al~~~~~al~l~p~-~~--------~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 561 (573)
.|-+.-|++.|+..++++|. ++ .+..+++-+..+-.+-+.++.+..-++++
T Consensus 355 RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~P 414 (665)
T KOG2422|consen 355 RGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLP 414 (665)
T ss_pred cCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcC
Confidence 78899999999999999998 42 34445666666666666666666555544
No 396
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=60.10 E-value=45 Score=25.27 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH-------HHHHHhCcCcH-HHHHHHHHHHHHHHHHHHH
Q 008244 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC-------TKAINLDKKVR-LICAEAQQERCLDITRRQL 551 (573)
Q Consensus 480 ~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~-------~~al~l~p~~~-~~~~~~~~~~~~~~~~~al 551 (573)
+++|+...++|++.+. .|++++|+..| .++++.+|+.. .-..+.++..++.+.+.-.
T Consensus 5 ~~~A~~li~~Av~~d~---------------~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE~lk 69 (77)
T smart00745 5 LSKAKELISKALKADE---------------AGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRAEEIK 69 (77)
T ss_pred HHHHHHHHHHHHHHHH---------------cCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777766653 45555555544 45555666642 2223444555555544433
No 397
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=58.04 E-value=2.4e+02 Score=29.53 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 478 KQWLKAISFYTEAIKLNGNNATYYSN--RAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 478 ~~~~~Ai~~y~~ai~~~p~~~~~~~n--~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
.+-..|++.|..||+.+|..+.--++ +..+....++-..-++.|+.++..||.-
T Consensus 326 drrR~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkk 381 (615)
T KOG3540|consen 326 DRRRDALENYLAALQADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKK 381 (615)
T ss_pred hHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 34477999999999999987643333 3444445666677889999999999974
No 398
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.96 E-value=39 Score=28.85 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=34.3
Q ss_pred cChHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 008244 459 NQKQSAEIA----KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 501 (573)
Q Consensus 459 ~~~~~~~~~----~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~ 501 (573)
++++..+.+ .++|..|+.+|++++...++..||.+.+.-..++
T Consensus 72 ~d~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL 118 (143)
T KOG4056|consen 72 SDAEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQPAQLL 118 (143)
T ss_pred CCHHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHH
Confidence 444555544 5799999999999999999999999988776554
No 399
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=57.32 E-value=25 Score=35.31 Aligned_cols=63 Identities=16% Similarity=0.084 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG--------NNATYYSNRAAAYLESGSFLQAEADCT 522 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p--------~~~~~~~n~a~~~~~l~~~~~Al~~~~ 522 (573)
..+.+..+...|+..+..++|..|...|.+|..+.. +...+++..|.+++++++++..+-..-
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~na 107 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNA 107 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 345678899999999999999999999999998743 246788888999999988887665443
No 400
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=57.05 E-value=24 Score=27.00 Aligned_cols=64 Identities=11% Similarity=0.009 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHH
Q 008244 481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLK 552 (573)
Q Consensus 481 ~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~ 552 (573)
..|++...+|++.+... .--..+..|.+|++.|.++++..|+.. .-..+.++..++.+.+.-.+
T Consensus 4 ~~a~~l~~~Ave~D~~g--------~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk~ 68 (77)
T cd02683 4 LAAKEVLKRAVELDQEG--------RFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIKK 68 (77)
T ss_pred HHHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777776665211 111111223455555556666778763 33334455555555444333
No 401
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=56.27 E-value=86 Score=23.71 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHHhCcCcH-HHHHHHHHHHHHHHH
Q 008244 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA-------DCTKAINLDKKVR-LICAEAQQERCLDIT 547 (573)
Q Consensus 480 ~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~-------~~~~al~l~p~~~-~~~~~~~~~~~~~~~ 547 (573)
.++|+...++|++.+ ..|+|++|+. .|.++++.+|+.. .-..+.++..++.+.
T Consensus 3 ~~~A~~l~~~Av~~D---------------~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~Ra 63 (75)
T cd02678 3 LQKAIELVKKAIEED---------------NAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRA 63 (75)
T ss_pred HHHHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 356777777776665 3445555555 4555555666542 222334444555443
No 402
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=55.40 E-value=1.4e+02 Score=34.75 Aligned_cols=73 Identities=10% Similarity=-0.141 Sum_probs=52.0
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCcCcH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-----SFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~-----~~~~Al~~~~~al~l~p~~~ 532 (573)
.+..+-.|.-++-+|-+.++|+|-+++|.-|++..|+.+..-.-+-.+-+++. +-..|+...--++..-|...
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 548 GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKI 625 (932)
T ss_pred CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 34445667888889999999999999999999999998766555554444433 23455566666677777753
No 403
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=54.52 E-value=53 Score=33.59 Aligned_cols=71 Identities=10% Similarity=-0.034 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--NG--NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~--~p--~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
..+...+-+-..|...+.|++|-+.-.+..-- .. ..+.+.+..|.+..-..+|..|.+++-+|+.+.|+..
T Consensus 207 ~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 207 GQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 33444445556677788889988877666521 12 2367888899999999999999999999999999863
No 404
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=54.38 E-value=60 Score=28.20 Aligned_cols=50 Identities=20% Similarity=0.083 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHH
Q 008244 497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDI 546 (573)
Q Consensus 497 ~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~ 546 (573)
.......++...+..|+|.-|++.++.++..+|++. +...++.++..++.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 345566788888899999999999999999999985 66666777666643
No 405
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=54.04 E-value=2.2e+02 Score=27.79 Aligned_cols=66 Identities=14% Similarity=-0.006 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Q 008244 464 AEIAKEKGNQAYKDKQWLK---AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~---Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p 529 (573)
...+..+++.+.+.+.++. |+...+.+-...|+.+..+.-.=.++.+.++.+++.+.+.+++.--+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 3345566666666665543 23333333344566666664444555557788888888888877543
No 406
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=53.53 E-value=88 Score=23.80 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (573)
Q Consensus 480 ~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~ 526 (573)
..+|+....+|++.+.. ++|++|+..|..+++
T Consensus 3 l~~A~~l~~~Ave~d~~---------------~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 3 LEQAAELIRLALEKEEE---------------GDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHHHHHH---------------hhHHHHHHHHHHHHH
Confidence 36778888888777633 566666666665544
No 407
>PF12854 PPR_1: PPR repeat
Probab=53.05 E-value=33 Score=21.30 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008244 498 ATYYSNRAAAYLESGSFLQAEADCTK 523 (573)
Q Consensus 498 ~~~~~n~a~~~~~l~~~~~Al~~~~~ 523 (573)
...|.-+=.+|.+.|+.++|++.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34455555666666666666665554
No 408
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=51.74 E-value=64 Score=28.21 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHH
Q 008244 466 IAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATY 500 (573)
Q Consensus 466 ~~~~~g~~~~~~~-~~~~Ai~~y~~ai~~~p~~~~~ 500 (573)
...++|..+...| ++.++..+|-+||.+.|+-..+
T Consensus 92 ~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~L 127 (148)
T TIGR00985 92 QEVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQL 127 (148)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHH
Confidence 3457899999999 9999999999999998875444
No 409
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=51.35 E-value=1.8e+02 Score=27.12 Aligned_cols=116 Identities=9% Similarity=0.031 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHH-cCCHHHHHHHHHH-HHH-hcCCCHHHHHHHHHHHHHc
Q 008244 435 QNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYK-DKQWLKAISFYTE-AIK-LNGNNATYYSNRAAAYLES 511 (573)
Q Consensus 435 ~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~Ai~~y~~-ai~-~~p~~~~~~~n~a~~~~~l 511 (573)
..+|+.+........+-. +...+..+.|..|.. +..|.++++.+.. +|. -+++...++.+.+.+...+
T Consensus 5 ~~~ee~l~~d~~~l~~~k---------k~~k~~~~sG~~yv~~~~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~El 75 (215)
T cd07642 5 VAIEEALDVDRTVLYKMK---------KSVKAIHTSGLAHVENEEQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKEL 75 (215)
T ss_pred HHHHHHHHhhHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHH
Confidence 456666655555554444 567778888988854 4677888888877 553 2344457777777777776
Q ss_pred CCHHHHHHHHHHHHHhCcCcHHHH-HHHHH-HHHHHHHHHHHHHHhhccc
Q 008244 512 GSFLQAEADCTKAINLDKKVRLIC-AEAQQ-ERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 512 ~~~~~Al~~~~~al~l~p~~~~~~-~~~~~-~~~~~~~~~al~~~~~~~~ 559 (573)
.++.+-+.+=-..+-..|-...+. ..-.+ .+....+++..+.|+.+..
T Consensus 76 ~~l~~~L~~~~~~~I~~pl~s~lK~dLr~vK~d~KK~fdK~~~dyE~~~~ 125 (215)
T cd07642 76 TALFKNLVQNMNNIITFPLDSLLKGDLKGVKGDLKKPFDKAWKDYETKVT 125 (215)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 665544432222222234332222 22233 3556677888888886654
No 410
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=50.92 E-value=1.1e+02 Score=23.51 Aligned_cols=57 Identities=14% Similarity=0.000 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008244 501 YSNRAAAYLESGSFLQAEADCTKAINLDKKV----RLICAEAQQERCLDITRRQLKIFHMH 557 (573)
Q Consensus 501 ~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----~~~~~~~~~~~~~~~~~~al~~~~~~ 557 (573)
....|.=++..++.++|+...+++|+..++. .++-.+.+++.-.|.+++.++.-..-
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666678889999999999999998775 24444567777778888877765543
No 411
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=50.40 E-value=34 Score=26.34 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~ 493 (573)
+.+..+.++|..+-..|+.++|+.+|+++|..
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 45667778888888889999999999999875
No 412
>PF13041 PPR_2: PPR repeat family
Probab=49.44 E-value=79 Score=21.32 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 500 YYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 500 ~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
.|+-+=.+|.+.|++++|++.|++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4444455555566666666666655543
No 413
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.38 E-value=2.2e+02 Score=31.08 Aligned_cols=63 Identities=17% Similarity=0.086 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 008244 464 AEIAKEKGNQAYKD---KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLD 528 (573)
Q Consensus 464 ~~~~~~~g~~~~~~---~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~----l~~~~~Al~~~~~al~l~ 528 (573)
+...+.+|..+... .++..|.++|..|.+. .+..+.+++|.||.. ..+...|...++++.+++
T Consensus 325 ~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 325 PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 55566677766554 4789999999999887 478889999999975 347899999999999998
No 414
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=48.92 E-value=48 Score=27.90 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 008244 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY 500 (573)
Q Consensus 467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~ 500 (573)
..++|..+..+|++++|..+|-+||.+.|+-..+
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~L 99 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAEL 99 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 4578999999999999999999999998865433
No 415
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=48.85 E-value=1.6e+02 Score=28.69 Aligned_cols=96 Identities=18% Similarity=0.054 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCcCc
Q 008244 464 AEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESG-------SFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 464 ~~~~~~~g~~~~~----~~~~~~Ai~~y~~ai~~~p~~-~~~~~n~a~~~~~l~-------~~~~Al~~~~~al~l~p~~ 531 (573)
+...+++|..+.. ..++.+|...|++|.+..-.. ..+.++++.+|..-. +...|+..|.++.... +.
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-~~ 187 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-NP 187 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-CH
Confidence 5566677777776 458888888888888886444 355777777776631 2336888888777665 22
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHhhcccc
Q 008244 532 RLICAEAQQERC----LDITRRQLKIFHMHWSW 560 (573)
Q Consensus 532 ~~~~~~~~~~~~----~~~~~~al~~~~~~~~~ 560 (573)
.+.+..+..+.. ....++|.+.|+++...
T Consensus 188 ~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 188 DAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 233333333221 13566666666665543
No 416
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.75 E-value=1.1e+02 Score=27.57 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=42.7
Q ss_pred CccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 008244 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES 511 (573)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l 511 (573)
.+.+|-.......+|...++.|+|..|...|.+... +.+.+..-.+|+++.+.+
T Consensus 160 ~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 160 GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 445566677777889999999999999999988776 667777788888887654
No 417
>PF12854 PPR_1: PPR repeat
Probab=48.74 E-value=38 Score=21.04 Aligned_cols=26 Identities=12% Similarity=0.005 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTE 489 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ 489 (573)
...|.-+-..+.+.|+.++|++.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 56678888999999999999998875
No 418
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.73 E-value=1.7e+02 Score=31.98 Aligned_cols=68 Identities=16% Similarity=0.058 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
+...+...+++.-.|.+..+.+.|.+.|.+|=+.+|.++..-.........-+.-++|+....+....
T Consensus 390 ~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 390 SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 34557778889999999999999999999999999999988888888888899999999988877554
No 419
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=48.55 E-value=66 Score=34.54 Aligned_cols=73 Identities=18% Similarity=0.103 Sum_probs=56.2
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhcCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTE-AIKLNGNNATYYSNR------AAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~-ai~~~p~~~~~~~n~------a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
.+++++....+++..+...|..-.++..+.+ +.+..|++......+ +..+..+++..++..+..++..+.|++
T Consensus 96 ~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 96 VNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred cCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence 4456677888888888767766666666655 888899987666666 777777888888888999999998887
No 420
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.91 E-value=71 Score=29.25 Aligned_cols=50 Identities=16% Similarity=0.044 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 481 ~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
+..++..++.++..| ++..|.+++.++...|+.++|.+..+++..+-|.+
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 334444555666666 78888999999999999999999999999999944
No 421
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=47.16 E-value=1e+02 Score=23.16 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCcCcH-HHHHHHHHHHHHHHH
Q 008244 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA-------INLDKKVR-LICAEAQQERCLDIT 547 (573)
Q Consensus 480 ~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~a-------l~l~p~~~-~~~~~~~~~~~~~~~ 547 (573)
++.|+...++|++.+ +.|+|++|+..|..+ ++.+|+.. .-..+.++..++.+.
T Consensus 3 ~~~a~~l~~~Av~~D---------------~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~Ra 63 (75)
T cd02656 3 LQQAKELIKQAVKED---------------EDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRA 63 (75)
T ss_pred HHHHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 356666666666655 335555555555555 44555542 222334444444443
No 422
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=47.10 E-value=2.7e+02 Score=30.37 Aligned_cols=59 Identities=14% Similarity=0.036 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~ 522 (573)
..+.+...++..+-..++.++|-.+|++.+.++|+ ..|+.-+.-+.+.|-..+|....+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 40 LTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 44667778888899999999999999999999998 566666777777776666655554
No 423
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=46.93 E-value=1.4e+02 Score=29.40 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhCcCcH--HHHHHHHHHHHHHHHHHHHHHH
Q 008244 514 FLQAEADCTKAINLDKKVR--LICAEAQQERCLDITRRQLKIF 554 (573)
Q Consensus 514 ~~~Al~~~~~al~l~p~~~--~~~~~~~~~~~~~~~~~al~~~ 554 (573)
|..|+++|..+|+.+.+++ .-..++++.+++.+.++--.++
T Consensus 33 Y~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAEkLK~yL 75 (439)
T KOG0739|consen 33 YQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAEKLKAYL 75 (439)
T ss_pred HHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777764442 3344566666666655544443
No 424
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.61 E-value=1.1e+02 Score=34.34 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~ 492 (573)
....+.+...|+-+|++|+|++|...|-+.|.
T Consensus 365 d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 365 DTLAEIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 35577888999999999999999999998885
No 425
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=46.49 E-value=32 Score=20.08 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 501 YSNRAAAYLESGSFLQAEADCTKAIN 526 (573)
Q Consensus 501 ~~n~a~~~~~l~~~~~Al~~~~~al~ 526 (573)
|+.+=.+|.+.|++++|.+.+++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444555555556665555555443
No 426
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=46.16 E-value=2.5e+02 Score=28.97 Aligned_cols=90 Identities=11% Similarity=0.027 Sum_probs=64.8
Q ss_pred HHHHcCCH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCcCcH-HHHHHH
Q 008244 473 QAYKDKQW-LKAISFYTEAIKLNGNNATYYSNRAAAYLESG------------SFLQAEADCTKAINLDKKVR-LICAEA 538 (573)
Q Consensus 473 ~~~~~~~~-~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~------------~~~~Al~~~~~al~l~p~~~-~~~~~~ 538 (573)
...+.+.| .++++.-.+.++.+|+....|+.|=.++.... -+++-+..-..+++.+|+.+ +.+.+.
T Consensus 37 ~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~ 116 (421)
T KOG0529|consen 37 KKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRK 116 (421)
T ss_pred HHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 33445555 56777778888999999999988877765433 35666777888999999975 666666
Q ss_pred HHHHHH--HHHHHHHHHHhhccccCC
Q 008244 539 QQERCL--DITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 539 ~~~~~~--~~~~~al~~~~~~~~~~~ 562 (573)
.+.... ..+..-++.-++..+.+|
T Consensus 117 w~L~~~p~~~~~~EL~lcek~L~~D~ 142 (421)
T KOG0529|consen 117 WVLQKNPHSDWNTELQLCEKALKQDP 142 (421)
T ss_pred HHHHhCCCchHHHHHHHHHHHHhcCc
Confidence 555533 457778888888777776
No 427
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.64 E-value=3.3e+02 Score=27.32 Aligned_cols=98 Identities=10% Similarity=0.016 Sum_probs=66.7
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG------NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-- 531 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p------~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-- 531 (573)
+.+-.+++.+++.-|.+.|+-+.|++.+++..+..- +-..+...+|..|....-..+-++-.+..++.-.++
T Consensus 100 E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeR 179 (393)
T KOG0687|consen 100 ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWER 179 (393)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhh
Confidence 346688999999999999999999999877665432 224556677888877777778887777777776665
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008244 532 --RLICAEAQQERCLDITRRQLKIFHMH 557 (573)
Q Consensus 532 --~~~~~~~~~~~~~~~~~~al~~~~~~ 557 (573)
..-...|........+.+|...|.-.
T Consensus 180 rNRlKvY~Gly~msvR~Fk~Aa~Lfld~ 207 (393)
T KOG0687|consen 180 RNRLKVYQGLYCMSVRNFKEAADLFLDS 207 (393)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 22223344444445566666555543
No 428
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=45.51 E-value=64 Score=38.03 Aligned_cols=103 Identities=13% Similarity=0.035 Sum_probs=79.2
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--- 528 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~--------p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~--- 528 (573)
.++.++.+..++..+.+.+++++|+..-.++.-+. |+....|.|++...+..++...|+..+.+++++.
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence 46678888999999999999999999877776442 4567899999999999999999999999998864
Q ss_pred --cCc---HHH-HHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244 529 --KKV---RLI-CAEAQQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 529 --p~~---~~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
|+. ... -........++.++.+++..+.+.+.+.
T Consensus 1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 322 222 3344556666888888888887776543
No 429
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.48 E-value=97 Score=24.53 Aligned_cols=34 Identities=18% Similarity=0.078 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG 495 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p 495 (573)
.....+.+++......|++++|+..++++|++..
T Consensus 39 ~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 39 GLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4456788899999999999999999999998753
No 430
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=45.08 E-value=4.7e+02 Score=28.96 Aligned_cols=101 Identities=14% Similarity=0.032 Sum_probs=70.8
Q ss_pred cChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 459 NQKQSAEIAKEKGNQAY-KDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~-~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
....++....+.|..++ ...++++|..+.++++.+..++ ..+.+-++.+|.+.+... |+..++++++.--++
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 33567889999999998 5699999999999999887542 234455688888877777 999999999876552
Q ss_pred -----HHHHHHHHHHHHH--HHHHHHHHHHhhcccc
Q 008244 532 -----RLICAEAQQERCL--DITRRQLKIFHMHWSW 560 (573)
Q Consensus 532 -----~~~~~~~~~~~~~--~~~~~al~~~~~~~~~ 560 (573)
...++..++...+ +.+..|++.++.-..+
T Consensus 133 ~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~ 168 (608)
T PF10345_consen 133 GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQL 168 (608)
T ss_pred CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 2333333333332 4666677777655443
No 431
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=44.36 E-value=3.2e+02 Score=26.87 Aligned_cols=124 Identities=3% Similarity=-0.059 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------CHHHHHH
Q 008244 430 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSN 503 (573)
Q Consensus 430 ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~------~~~~~~n 503 (573)
+-.+...-|+.+++..+.+.+.. ..+.+.+.++++.+.|.-|.+.++-+.+.+.+.+.++.+-. -...-..
T Consensus 84 ~n~l~kkneeki~Elde~i~~~e---edngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiR 160 (412)
T COG5187 84 MNTLLKKNEEKIEELDERIREKE---EDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIR 160 (412)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHh---hcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence 34444445555555444433222 12234567899999999999999999999988877654321 2344456
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCcH----HHHHHHHHHHHHHHHHHHHHHHhh
Q 008244 504 RAAAYLESGSFLQAEADCTKAINLDKKVR----LICAEAQQERCLDITRRQLKIFHM 556 (573)
Q Consensus 504 ~a~~~~~l~~~~~Al~~~~~al~l~p~~~----~~~~~~~~~~~~~~~~~al~~~~~ 556 (573)
+|.+|-.+.-.++.++..+-.++.-.++. .-..++........+.+|...|.-
T Consensus 161 lg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d 217 (412)
T COG5187 161 LGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSD 217 (412)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77777777778888888888888877752 222234444445566666655543
No 432
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=43.74 E-value=25 Score=36.46 Aligned_cols=141 Identities=11% Similarity=0.087 Sum_probs=66.1
Q ss_pred hhccccccCCceeeecCccC-------CCCCc---eeEEEeccCCcHHHHHHHHHHHHHHHHHHHhhhhcCCC-CCCccC
Q 008244 392 LLSIASVSGCCQVTVPLGYY-------DKCPT---SVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLS-TNTFNQ 460 (573)
Q Consensus 392 ~t~~~nl~G~PaisvP~g~~-------~glPv---Glq~~~~~~~d~~ll~~a~~le~~l~~~~~~~~~~~~~-~~~~~~ 460 (573)
.+++-.+.++|.+.+|+... +++|+ +++.+....+...-+--+..|++++......+..-++. ..+.++
T Consensus 165 ~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~~~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E 244 (422)
T PF06957_consen 165 RTYLPALPSLPPLPSYIRRNWDESNPKNGLPAIPLSLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREE 244 (422)
T ss_dssp EEEE-SSTTTS-EEEEEBCTTTTSSSCCG-BB----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHH
T ss_pred ceecccCCCCCCccccccCCccccccccCCCcCcCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHH
Confidence 56667777888888887653 23442 22222111111111111223555555555554444333 333344
Q ss_pred hHHHHHHHHHHHHHHH-------cCC-----HHHH-----HHHHHHHHHhcCCCHHHHHHHHHHH-HHcCCHHHHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYK-------DKQ-----WLKA-----ISFYTEAIKLNGNNATYYSNRAAAY-LESGSFLQAEADCT 522 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~-------~~~-----~~~A-----i~~y~~ai~~~p~~~~~~~n~a~~~-~~l~~~~~Al~~~~ 522 (573)
.++++.+......|.- .+. .++. +..|=...++.|.+-.+-.+.|+-. +|.++|.-|...++
T Consensus 245 ~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FAr 324 (422)
T PF06957_consen 245 EDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFAR 324 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4556665555555431 111 1111 1112112234455544444555443 68999999999999
Q ss_pred HHHHhCcCcH
Q 008244 523 KAINLDKKVR 532 (573)
Q Consensus 523 ~al~l~p~~~ 532 (573)
+.|+++|...
T Consensus 325 RLLel~p~~~ 334 (422)
T PF06957_consen 325 RLLELNPSPE 334 (422)
T ss_dssp HHHCT--SCH
T ss_pred HHHHcCCCHH
Confidence 9999999865
No 433
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=43.50 E-value=3.3e+02 Score=29.56 Aligned_cols=135 Identities=10% Similarity=-0.024 Sum_probs=81.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 008244 426 GDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRA 505 (573)
Q Consensus 426 ~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a 505 (573)
-++..++.+..++.. ..................++.+..+...+..--.+|++..|...|++..+..|+...+-....
T Consensus 330 Y~efWiky~~~m~~~--~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~ 407 (577)
T KOG1258|consen 330 YDEFWIKYARWMESS--GDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKI 407 (577)
T ss_pred hHHHHHHHHHHHHHc--CchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHH
Confidence 356677777777654 111111111111112223344555555555566779999999999999988899888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHH-hCcC---c----HHHHHHHHHHHH-HHHHHHHHHHHhhccccCCC
Q 008244 506 AAYLESGSFLQAEADCTKAIN-LDKK---V----RLICAEAQQERC-LDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 506 ~~~~~l~~~~~Al~~~~~al~-l~p~---~----~~~~~~~~~~~~-~~~~~~al~~~~~~~~~~~~ 563 (573)
....+.++.+.+-. ....+. ..+. + +.+...++.... .+..+.|...+..+.+..|.
T Consensus 408 ~~e~r~~~~~~~~~-~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~ 473 (577)
T KOG1258|consen 408 NWERRKGNLEDANY-KNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPD 473 (577)
T ss_pred hHHHHhcchhhhhH-HHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCc
Confidence 88889999888875 222222 2222 1 233444433333 36677777777777776665
No 434
>PF13041 PPR_2: PPR repeat family
Probab=42.45 E-value=1e+02 Score=20.70 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 494 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~ 494 (573)
...|...-..+.+.|++++|++.|++-.+..
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 4456777888999999999999999999764
No 435
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=42.42 E-value=35 Score=33.62 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY 500 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~ 500 (573)
+++..++..|...-+.|+.-+||..|+.|+++-|+-...
T Consensus 17 kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~ 55 (366)
T KOG2997|consen 17 KKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESK 55 (366)
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHH
Confidence 345555555555555666666666666666665554333
No 436
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=41.53 E-value=63 Score=34.39 Aligned_cols=71 Identities=10% Similarity=0.002 Sum_probs=62.1
Q ss_pred CCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
....+|.+...|..+-..+-.+ .+++..+.|++-+...|..+.+|-.-..--+..++|+.....|.++|..
T Consensus 12 rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 12 RIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4456778899999887777555 9999999999999999999999999999999999999999999998764
No 437
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=41.49 E-value=3.8e+02 Score=26.87 Aligned_cols=98 Identities=18% Similarity=0.127 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCcHHH----
Q 008244 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTKAINLD-----KKVRLI---- 534 (573)
Q Consensus 466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~--~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~-----p~~~~~---- 534 (573)
....++....++|+..+|++.++...+-.|-. -..+-|+-.+++.+.-|. |++..|... |...+.
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYA----DvqavLakYDdislPkSA~icYTa 352 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYA----DVQAVLAKYDDISLPKSAAICYTA 352 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhccccCcchHHHHHHH
Confidence 34567888899999999999999888777732 245556666666665444 333333221 433111
Q ss_pred ---HHHHHHH---------HHH-HHHHHHHHHHhhccccCCCCCCC
Q 008244 535 ---CAEAQQE---------RCL-DITRRQLKIFHMHWSWSPPIKEH 567 (573)
Q Consensus 535 ---~~~~~~~---------~~~-~~~~~al~~~~~~~~~~~~~~~~ 567 (573)
..++... +.+ .+-..|.+..+++..+||+++.+
T Consensus 353 ALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkY 398 (556)
T KOG3807|consen 353 ALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKY 398 (556)
T ss_pred HHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHH
Confidence 1122111 111 34456788899999999988764
No 438
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=41.31 E-value=75 Score=18.96 Aligned_cols=27 Identities=15% Similarity=-0.016 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 500 YYSNRAAAYLESGSFLQAEADCTKAIN 526 (573)
Q Consensus 500 ~~~n~a~~~~~l~~~~~Al~~~~~al~ 526 (573)
.|..+-.++.+.|+++.|++.+++..+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455666777777777777777776554
No 439
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.65 E-value=5.1e+02 Score=28.14 Aligned_cols=145 Identities=10% Similarity=-0.047 Sum_probs=78.5
Q ss_pred eEEEeccCCcHHHHHHHHHHHHH-------------HHHHHHhh--------hhcCCCCCCccChHHHHHHHHHHHHHHH
Q 008244 418 VSFIARHGGDRFLLDTVQNMYAS-------------LQEQADIA--------TKSKLSTNTFNQKQSAEIAKEKGNQAYK 476 (573)
Q Consensus 418 lq~~~~~~~d~~ll~~a~~le~~-------------l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 476 (573)
+-++..+++-..||.++..+... +...+... ......-...+|......++..-.-+-+
T Consensus 275 ~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~ 354 (665)
T KOG2422|consen 275 ILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQ 354 (665)
T ss_pred eeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHh
Confidence 44566688888888887765433 22211111 1111122223445555566667777788
Q ss_pred cCCHHHHHHHHHHHHHhcCC-CHHHHHH-HHHHHHHcCCHHHHHHHHHHH-----HHhCcCcHHHHHHHHHHHHHH---H
Q 008244 477 DKQWLKAISFYTEAIKLNGN-NATYYSN-RAAAYLESGSFLQAEADCTKA-----INLDKKVRLICAEAQQERCLD---I 546 (573)
Q Consensus 477 ~~~~~~Ai~~y~~ai~~~p~-~~~~~~n-~a~~~~~l~~~~~Al~~~~~a-----l~l~p~~~~~~~~~~~~~~~~---~ 546 (573)
.|-+..|.+.+.-.++++|. ++.+-.. +-...++..+|+=-++.++.. +.+-|++..-...+..+.... .
T Consensus 355 RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~ 434 (665)
T KOG2422|consen 355 RGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDD 434 (665)
T ss_pred cCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhh
Confidence 99999999999999999998 6533222 222223444454444444433 445577643233333222221 2
Q ss_pred HHHHHHHHhhccccCC
Q 008244 547 TRRQLKIFHMHWSWSP 562 (573)
Q Consensus 547 ~~~al~~~~~~~~~~~ 562 (573)
-+.++..+.+++.+-|
T Consensus 435 rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 435 RQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 4455555555555444
No 440
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=40.09 E-value=3.1e+02 Score=25.53 Aligned_cols=119 Identities=10% Similarity=0.094 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHc
Q 008244 435 QNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYK-DKQWLKAISFYTEAI--KLNGNNATYYSNRAAAYLES 511 (573)
Q Consensus 435 ~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~Ai~~y~~ai--~~~p~~~~~~~n~a~~~~~l 511 (573)
..+|+.+......+.+-. +......+.|..|.. +..|-.+++.+...- +-+|+-..++.+.+.+...+
T Consensus 5 ~~~ee~l~~~e~~L~Kl~---------K~~kam~~SG~~yv~n~~~f~~~l~~Lg~~~~~~dd~~i~~a~~kfs~~~~El 75 (215)
T cd07641 5 NVLEEALDQDRTALQKVK---------KSVKAIYNSGQDHVQNEENYAQALDKFGSNFLSRDNPDLGTAFVKFSTLTKEL 75 (215)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHH
Confidence 345555555444444433 556677777777744 355666666665544 34455567777777777665
Q ss_pred CCHHH-HHHHHHHHHHhCcCcHHHHHHHHHH-HHHHHHHHHHHHHhhccccCC
Q 008244 512 GSFLQ-AEADCTKAINLDKKVRLICAEAQQE-RCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 512 ~~~~~-Al~~~~~al~l~p~~~~~~~~~~~~-~~~~~~~~al~~~~~~~~~~~ 562 (573)
-.+.. =++.+++.+...=++..--..-... +....++++++.|+.+...+.
T Consensus 76 ~~~~k~L~~~~~~~v~~~L~~flK~Dlr~~K~d~KK~FdK~~kDye~k~~K~e 128 (215)
T cd07641 76 STLLKNLLQGLSHNVIFTLDSLLKGDLKGVKGDLKKPFDKAWKDYETKFTKIE 128 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHH
Confidence 55433 3334444444322221100111222 555778888888887765443
No 441
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=39.29 E-value=59 Score=21.82 Aligned_cols=26 Identities=12% Similarity=-0.025 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 468 KEKGNQAYKDKQWLKAISFYTEAIKL 493 (573)
Q Consensus 468 ~~~g~~~~~~~~~~~Ai~~y~~ai~~ 493 (573)
.+++..|.+.|+++.|.+..++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999953
No 442
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=39.20 E-value=1.7e+02 Score=22.19 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH-------HHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHH
Q 008244 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ-------AEADCTKAINLDKKVR-LICAEAQQERCLDITRR 549 (573)
Q Consensus 480 ~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~-------Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~ 549 (573)
.++|+...++|++.+ ..|+|++ |++.|..+++.+++-. .-..+.++..++.+.+.
T Consensus 3 l~~Ai~lv~~Av~~D---------------~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RAE~ 65 (75)
T cd02684 3 LEKAIALVVQAVKKD---------------QRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRAEE 65 (75)
T ss_pred HHHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 567788888887765 3444444 4555555555555542 22334455555555443
No 443
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=37.71 E-value=80 Score=18.68 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=17.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 501 YSNRAAAYLESGSFLQAEADCTKAIN 526 (573)
Q Consensus 501 ~~n~a~~~~~l~~~~~Al~~~~~al~ 526 (573)
|+.+=.+|.+.|++++|++.|++..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555666777777777777776654
No 444
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.61 E-value=2.7e+02 Score=31.78 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~ 492 (573)
......+.|..+...|+|.+|+++|+.+|-
T Consensus 990 ~l~~kl~~gy~ltt~gKf~eAie~Frsii~ 1019 (1202)
T KOG0292|consen 990 QLNKKLQKGYKLTTEGKFGEAIEKFRSIIY 1019 (1202)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 355677889999999999999999988773
No 445
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=37.43 E-value=3.4e+02 Score=26.42 Aligned_cols=65 Identities=20% Similarity=0.106 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---------------SFLQAEADCTK 523 (573)
Q Consensus 463 ~~~~~~~~g~~~~~----~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~---------------~~~~Al~~~~~ 523 (573)
........|..|.. ..++++|+..|.+|-+... ....++++ +++.-| +...|+..+++
T Consensus 186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~ 262 (292)
T COG0790 186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQK 262 (292)
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHH
Confidence 35666777777755 4689999999999999986 88888888 776655 66666777776
Q ss_pred HHHhCcC
Q 008244 524 AINLDKK 530 (573)
Q Consensus 524 al~l~p~ 530 (573)
+....+.
T Consensus 263 ~~~~~~~ 269 (292)
T COG0790 263 ACELGFD 269 (292)
T ss_pred HHHcCCh
Confidence 6666544
No 446
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=37.43 E-value=1.7e+02 Score=30.14 Aligned_cols=54 Identities=13% Similarity=-0.060 Sum_probs=43.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHH--cCCHHHHHHHHH
Q 008244 469 EKGNQAYKDKQWLKAISFYTEAIKLNG-----NNATYYSNRAAAYLE--SGSFLQAEADCT 522 (573)
Q Consensus 469 ~~g~~~~~~~~~~~Ai~~y~~ai~~~p-----~~~~~~~n~a~~~~~--l~~~~~Al~~~~ 522 (573)
.++..+++.++|..|.+.|.++++..+ +....|.+++.+|.. .=+|++|.+.++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 356688999999999999999998754 235777888888875 557889998888
No 447
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=37.22 E-value=65 Score=31.21 Aligned_cols=64 Identities=16% Similarity=0.047 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 499 ~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
....|+=..|...++++.|+.+.++.+.++|++. ..--+|-++..++.+.-|+..++.....-|
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P 246 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCP 246 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 4556677788899999999999999999999985 555677778888888888887776555444
No 448
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=36.80 E-value=3.7e+02 Score=30.76 Aligned_cols=94 Identities=11% Similarity=0.016 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV--- 531 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~---------~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~--- 531 (573)
+.-....+..+..+.+|.+|.....++-..-+. .+..-.-+|.+....+++++|++.++.++..=|.+
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 334455677778889999998888887654333 24666678899999999999999999999987775
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008244 532 ---RLICAEAQQERCLDITRRQLKIFHMH 557 (573)
Q Consensus 532 ---~~~~~~~~~~~~~~~~~~al~~~~~~ 557 (573)
..+...+.+....|.+.+|+..-..+
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a 523 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQA 523 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHH
Confidence 24455566666667776666554443
No 449
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=36.46 E-value=1.3e+02 Score=28.64 Aligned_cols=47 Identities=23% Similarity=0.187 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHH-----hcCCCH---HHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q 008244 481 LKAISFYTEAIK-----LNGNNA---TYYSNRAAAYLE-SGSFLQAEADCTKAINL 527 (573)
Q Consensus 481 ~~Ai~~y~~ai~-----~~p~~~---~~~~n~a~~~~~-l~~~~~Al~~~~~al~l 527 (573)
++|.+.|++|++ +.|.++ .+..|.+..|+. +++.++|++.+++|+.-
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 455566666654 456665 566777777655 99999999998888653
No 450
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.57 E-value=1.1e+02 Score=27.93 Aligned_cols=51 Identities=6% Similarity=-0.035 Sum_probs=36.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008244 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521 (573)
Q Consensus 470 ~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~ 521 (573)
...++.++|+|++|.+.+++..+ +|++......+...-.+.+.|..-+++|
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqnF 167 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQNF 167 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHhc
Confidence 44577899999999999999998 8888777665555554444455444443
No 451
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=35.03 E-value=2.6e+02 Score=29.52 Aligned_cols=55 Identities=20% Similarity=0.151 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI 525 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al 525 (573)
....|.++|...+++|+++-|.++|.++=. +..+...|...|+-+.=.+-.+.|.
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 466999999999999999999999987533 3445566666777544444443333
No 452
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=34.95 E-value=2.7e+02 Score=23.59 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=31.2
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008244 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522 (573)
Q Consensus 476 ~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~ 522 (573)
+.+.....+......++.++.+...+..+..+|.+.+ ..+.+..++
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 4567788888888888887777777777777776553 344444444
No 453
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=34.38 E-value=2.9e+02 Score=27.63 Aligned_cols=22 Identities=27% Similarity=0.140 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 008244 536 AEAQQERCLDITRRQLKIFHMH 557 (573)
Q Consensus 536 ~~~~~~~~~~~~~~al~~~~~~ 557 (573)
+++.+.+.+++.++|.+.|..-
T Consensus 280 RLAMCARklGrlrEA~K~~RDL 301 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDL 301 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHH
Confidence 3456666778888888877643
No 454
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=33.68 E-value=1.7e+02 Score=31.54 Aligned_cols=89 Identities=12% Similarity=0.121 Sum_probs=52.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhc-----CCCH
Q 008244 426 GDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQA--YKDKQWLKAISFYTEAIKLN-----GNNA 498 (573)
Q Consensus 426 ~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~Ai~~y~~ai~~~-----p~~~ 498 (573)
+-..+..+.+.+...|.+..... .-+.++-++|... .....-..+++.|++||... -.+.
T Consensus 252 d~~e~~~lqq~lLw~lyd~ghl~-------------~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv 318 (618)
T PF05053_consen 252 DSVELAQLQQDLLWLLYDMGHLA-------------RYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV 318 (618)
T ss_dssp EEHHHHHHHHHHHHHHHHTTTTT-------------T-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S
T ss_pred chHHHHHHHHHHHHHHHhcCchh-------------hCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc
Confidence 33455566666665555533322 2244555555443 22333367788899988652 2234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 499 TYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 499 ~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
--|..+|.+|++.++|.+|+..+-+|-..
T Consensus 319 YPYty~gg~~yR~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 319 YPYTYLGGYYYRHKRYREALRSWAEAADV 347 (618)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccceehhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55777899999999999999998887543
No 455
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=33.47 E-value=68 Score=35.66 Aligned_cols=72 Identities=15% Similarity=0.040 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 461 KQSAEIAKEKGNQA--YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 461 ~~~~~~~~~~g~~~--~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
...+....++...+ ...++|..++...+-++...|....+++.|+.||..+++++-|+++..-....+|++.
T Consensus 88 ~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~ 161 (748)
T KOG4151|consen 88 HVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNV 161 (748)
T ss_pred hhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 34444455555444 5679999999999999999999999999999999999999999999888888899973
No 456
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=33.44 E-value=1.6e+02 Score=31.21 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=28.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 494 NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 494 ~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
..++...|-.+|...++.|+++-|.++|+++-..
T Consensus 343 ~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 343 ELDDPEKWKQLGDEALRQGNIELAEECYQKAKDF 376 (443)
T ss_dssp CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc
Confidence 4567899999999999999999999999886443
No 457
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=32.43 E-value=1.1e+02 Score=19.05 Aligned_cols=13 Identities=23% Similarity=0.049 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 008244 514 FLQAEADCTKAIN 526 (573)
Q Consensus 514 ~~~Al~~~~~al~ 526 (573)
+++|+..+++|.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 4555555555544
No 458
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=32.03 E-value=87 Score=19.00 Aligned_cols=27 Identities=19% Similarity=0.006 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHH
Q 008244 500 YYSNRAAAYLES----GSFLQAEADCTKAIN 526 (573)
Q Consensus 500 ~~~n~a~~~~~l----~~~~~Al~~~~~al~ 526 (573)
+.+++|.+|..- .+.++|+..+++|.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 344455555431 255555555555544
No 459
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=30.87 E-value=3.7e+02 Score=23.67 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hc------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK-LN------G-NNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~-~~------p-~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~ 526 (573)
...+.....++..++.|+.++|.+.++.+=. ++ | .......+++..++..|+|++|-..+..++.
T Consensus 73 ~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 73 PEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 3466778899999999999999997765321 11 1 1246667899999999999999998888864
No 460
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=30.59 E-value=6.8e+02 Score=27.23 Aligned_cols=104 Identities=11% Similarity=-0.017 Sum_probs=78.6
Q ss_pred CCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcH
Q 008244 454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKVR 532 (573)
Q Consensus 454 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~-p~~~ 532 (573)
.....-++.+...|..-..--.+.|+++.....|++++.-.......|.+.+.-....|+..-|-....+++++- |+-.
T Consensus 287 fhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~ 366 (577)
T KOG1258|consen 287 FHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP 366 (577)
T ss_pred cccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc
Confidence 334445566677777777777889999999999999999999999999999999999999888888888888876 3332
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhc
Q 008244 533 -LICAEAQQERCLDITRRQLKIFHMH 557 (573)
Q Consensus 533 -~~~~~~~~~~~~~~~~~al~~~~~~ 557 (573)
....-+...++.+.+..|...+++-
T Consensus 367 ~i~L~~a~f~e~~~n~~~A~~~lq~i 392 (577)
T KOG1258|consen 367 IIHLLEARFEESNGNFDDAKVILQRI 392 (577)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 4444556666666666666666543
No 461
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.37 E-value=1.3e+02 Score=32.70 Aligned_cols=63 Identities=21% Similarity=0.161 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------CCCHHHHH------------HH-HHHHHHcCCHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYS------------NR-AAAYLESGSFLQAEAD 520 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~--------p~~~~~~~------------n~-a~~~~~l~~~~~Al~~ 520 (573)
+...+|.++|+..++.+++..|.+|+.++-.+. ..++..+. |. -.||+..|+++++++.
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHH
Confidence 446789999999999999999999999876542 22333222 22 2577788888877765
Q ss_pred HHHH
Q 008244 521 CTKA 524 (573)
Q Consensus 521 ~~~a 524 (573)
+...
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 5443
No 462
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=30.31 E-value=3.4e+02 Score=29.45 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=40.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244 473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (573)
Q Consensus 473 ~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~ 530 (573)
.+....+|+-|++.+++. .-+-..+|..-|++++++++|..|..-|.+++++...
T Consensus 565 qLie~ErYqlaV~mckKc---~iD~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkge 619 (1141)
T KOG1811|consen 565 QLIEAERYQLAVEMCKKC---GIDTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGE 619 (1141)
T ss_pred HHHHHHHHHHHHHHHhhc---CCCcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCC
Confidence 345556666666655432 2345678888899999999999999999999988743
No 463
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=30.13 E-value=53 Score=32.39 Aligned_cols=78 Identities=6% Similarity=-0.075 Sum_probs=56.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH-H-HHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 487 YTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAE-A-QQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 487 y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~-~-~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
|.++--.-++++..|...+.--.+.+-|.+--..|.++|+++|.+.-++-. + .-+.-...++.+-..|.+.+.+||..
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 445555678999999999888889999999999999999999998422222 1 11222355666667777777777743
No 464
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=28.87 E-value=2e+02 Score=27.54 Aligned_cols=46 Identities=17% Similarity=0.089 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHh-----cCCCH---HHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 008244 481 LKAISFYTEAIKL-----NGNNA---TYYSNRAAAYLE-SGSFLQAEADCTKAIN 526 (573)
Q Consensus 481 ~~Ai~~y~~ai~~-----~p~~~---~~~~n~a~~~~~-l~~~~~Al~~~~~al~ 526 (573)
++|.+.|++|+++ .|.++ .+..|.+..|+. +++.++|++..++|+.
T Consensus 145 ~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 145 ENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4667777777654 46665 455667776665 7899999987777654
No 465
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=27.11 E-value=1.1e+02 Score=30.33 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Q 008244 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQ 539 (573)
Q Consensus 480 ~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~ 539 (573)
-++|+..|.+|++.+ +-|...+|+.-|+.|+++-|+....+++.+
T Consensus 16 ~kkA~~l~~~av~~E---------------q~G~l~dai~fYR~AlqI~~diEs~~r~l~ 60 (366)
T KOG2997|consen 16 AKKAIALYEKAVLKE---------------QDGSLYDAINFYRDALQIVPDIESKYRYLR 60 (366)
T ss_pred HHHHHHHHHHHHHHh---------------hcCcHHHHHHHHHhhhcCCchHHHHHHHHh
Confidence 367788888887765 578889999999999999999765555433
No 466
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.08 E-value=1.8e+02 Score=33.67 Aligned_cols=54 Identities=19% Similarity=0.331 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~ 526 (573)
....+.|+.+|..+.|+.|.-+|+ +..-|..++..+..+|+|+.|+...++|-.
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 345678999999999999999985 345688899999999999999999998744
No 467
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.68 E-value=85 Score=30.32 Aligned_cols=50 Identities=8% Similarity=0.108 Sum_probs=33.8
Q ss_pred HcCCHHHHHHHHHHHHHhCcCc-----HHH-------HHHHHHHHHHHHHHHHHHHHhhccc
Q 008244 510 ESGSFLQAEADCTKAINLDKKV-----RLI-------CAEAQQERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 510 ~l~~~~~Al~~~~~al~l~p~~-----~~~-------~~~~~~~~~~~~~~~al~~~~~~~~ 559 (573)
+-.+.++|+..|++++++.+.- +++ ++++...+.+++|.+-+.+...+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4558999999999999999872 343 4444555555666666665555443
No 468
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=26.03 E-value=4.9e+02 Score=28.47 Aligned_cols=62 Identities=10% Similarity=0.025 Sum_probs=48.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 470 ~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
-...+-+++..+++....+.-+.-....+...+.++..+-..++.+.|-..|++.+..+|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (578)
T PRK15490 14 TCLTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDE 75 (578)
T ss_pred HHHHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcc
Confidence 33445566677777766666666566677778888999999999999999999999999995
No 469
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=25.46 E-value=1.2e+02 Score=33.58 Aligned_cols=49 Identities=33% Similarity=0.449 Sum_probs=28.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008244 474 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523 (573)
Q Consensus 474 ~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~ 523 (573)
....++|.+||......-..+ ....+|-..+..|...|+|+-|.+.|.+
T Consensus 742 ai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHh
Confidence 345677777777665443332 2334555566666666666666665544
No 470
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.46 E-value=1.7e+02 Score=31.23 Aligned_cols=69 Identities=10% Similarity=-0.060 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~--p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~ 530 (573)
+.+..+...+..+...|+-+.|+..++..++.. --....++.++.++.-+.+|.+|..+++...+++-=
T Consensus 265 ~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdW 335 (546)
T KOG3783|consen 265 KGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDW 335 (546)
T ss_pred CCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh
Confidence 446777888888888888888899998888811 113688899999999999999999999998887543
No 471
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.29 E-value=5.3e+02 Score=30.27 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~ 528 (573)
.+..|.+.+.+-++.+...+||+.|-+ .+++..|.+.-.+-.+.|.|++-+++...|-+.-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 356788899999999999999999943 4788888888888899999999999999887754
No 472
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=24.39 E-value=6.8e+02 Score=24.53 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=27.9
Q ss_pred HHHHhhcCCCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCcc
Q 008244 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410 (573)
Q Consensus 351 ~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~ 410 (573)
..+.++++..|++++|..... .+ .+....+ +-.+|.|+|+-+.+.
T Consensus 259 ~~~~~~~~~ad~~v~ps~~e~---~~----~~~~~~E--------a~a~G~PvI~~~~~~ 303 (366)
T cd03822 259 EELPELFSAADVVVLPYRSAD---QT----QSGVLAY--------AIGFGKPVISTPVGH 303 (366)
T ss_pred HHHHHHHhhcCEEEecccccc---cc----cchHHHH--------HHHcCCCEEecCCCC
Confidence 456677888999999987542 00 0001111 225899999988764
No 473
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=24.11 E-value=2.1e+02 Score=21.73 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=23.4
Q ss_pred ccChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008244 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTE 489 (573)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ 489 (573)
.+--+.+..|.+-|.-++++|++..|+.++.=
T Consensus 29 ~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sY 60 (75)
T PF04010_consen 29 EEILEMAESYLEDGKYFLEKGDYVNALACFSY 60 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33445677888888888889998888888654
No 474
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=24.07 E-value=5.9e+02 Score=24.59 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHH----------------HHHHHhcCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFY----------------TEAIKLNGNNATYYSNRAAA-YLESGSFLQAEADCTKAIN 526 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y----------------~~ai~~~p~~~~~~~n~a~~-~~~l~~~~~Al~~~~~al~ 526 (573)
++.+...|..+++.++|.+|..+| ...-+-.|.+...+.-|+.. |+.+++...|...++.-++
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 455555666666666666655543 22234467788888888765 5668999988886665554
Q ss_pred h
Q 008244 527 L 527 (573)
Q Consensus 527 l 527 (573)
.
T Consensus 170 ~ 170 (260)
T PF04190_consen 170 K 170 (260)
T ss_dssp H
T ss_pred H
Confidence 4
No 475
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.02 E-value=7.4e+02 Score=24.85 Aligned_cols=93 Identities=18% Similarity=0.123 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCc
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--------NATYYSNRAAAYLESGSFLQAEADCTKAIN--LDKKV 531 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~--------~~~~~~n~a~~~~~l~~~~~Al~~~~~al~--l~p~~ 531 (573)
.-+.....++..|-+.++|+.|-..+. +|.++.. ....+..++..|++.++-.+|..+..++-- -+..|
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence 446667789999999999999887652 3433321 136778889999999999999998888732 23333
Q ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHh
Q 008244 532 R-----LICAEAQQERCLDITRRQLKIFH 555 (573)
Q Consensus 532 ~-----~~~~~~~~~~~~~~~~~al~~~~ 555 (573)
. .-.+.+++..+...+-+|.+.|.
T Consensus 180 e~Lqie~kvc~ARvlD~krkFlEAAqrYy 208 (399)
T KOG1497|consen 180 EQLQIEYKVCYARVLDYKRKFLEAAQRYY 208 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22344566666666655555544
No 476
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=23.32 E-value=2.5e+02 Score=28.24 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244 469 EKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (573)
Q Consensus 469 ~~g~~~~~~~~~~~Ai~~y~~ai~~--~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~ 530 (573)
|++..+.+..-.+.++...+...+. -.....++.-||..+.++|+.+||-..|++|+.+.++
T Consensus 334 NRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~ 397 (415)
T COG4941 334 NRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARN 397 (415)
T ss_pred hHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCC
No 477
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=23.16 E-value=81 Score=31.57 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CC---HHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhC-cCcHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---NN---ATYYSNRAAAYLESGSFLQ--AEADCTKAINLD-KKVRLI 534 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p---~~---~~~~~n~a~~~~~l~~~~~--Al~~~~~al~l~-p~~~~~ 534 (573)
+..=.+.|..+....+|+-|..+|-+|.+=.. ++ ...+-.+=.|-..++..++ ++-..+.+++.+ |+..+.
T Consensus 209 a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Am 288 (411)
T KOG1463|consen 209 ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAM 288 (411)
T ss_pred HHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHH
Confidence 33345677777788999999999988886321 11 2223333344445555554 555566677765 444566
Q ss_pred HHHHHHHH--HHHHHHHHHHHHhhccccCCCCCCCCcc
Q 008244 535 CAEAQQER--CLDITRRQLKIFHMHWSWSPPIKEHPFL 570 (573)
Q Consensus 535 ~~~~~~~~--~~~~~~~al~~~~~~~~~~~~~~~~~~~ 570 (573)
..-++++. .+..++.|++.|..-+.-+|-++.|...
T Consensus 289 kavAeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~~ 326 (411)
T KOG1463|consen 289 KAVAEAFGNRSLKDFEKALADYKKELAEDPIVRSHLQS 326 (411)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHHHH
Confidence 55555544 4488999999999888888876665443
No 478
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=23.13 E-value=6.7e+02 Score=27.14 Aligned_cols=55 Identities=15% Similarity=0.093 Sum_probs=43.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 473 ~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
.|+..++.+-|...|+-.++..++++.+-+....-+..+++-..|...|+++++-
T Consensus 410 Ey~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 410 EYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 4566778888888888888888888877777777777888888888888888776
No 479
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=22.93 E-value=2.2e+02 Score=20.60 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=21.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 487 YTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (573)
Q Consensus 487 y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~ 526 (573)
+.+.+...-.+..=+...=.-|+.+|++++|.++.++..+
T Consensus 12 ~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 12 LIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3334433333333444444556677777777777766543
No 480
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=22.56 E-value=3.3e+02 Score=30.42 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH------HHHhc----CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTE------AIKLN----GNN-ATYYSNRAAAYLESGSFLQAEADCTKA 524 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~------ai~~~----p~~-~~~~~n~a~~~~~l~~~~~Al~~~~~a 524 (573)
.+.|-..|..+-+..+|++|+++|++ ||++. |.. ..+--.-|..+...|+++.|+..|-+|
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 44556677788888999999998754 66653 322 222233356666777777777766543
No 481
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=22.53 E-value=5.6e+02 Score=23.62 Aligned_cols=64 Identities=5% Similarity=-0.147 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG------NNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p------~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~ 526 (573)
....+...+.....+|++++|.+.+++|.+.-. ....-.++-|.|-..+++|-||...+.-.-.
T Consensus 28 ei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 28 EIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 355667777888889999999999988875421 2233345567777788899999887765544
No 482
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=22.49 E-value=4.5e+02 Score=26.60 Aligned_cols=67 Identities=13% Similarity=0.013 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244 464 AEIAKEKGNQAYKDKQWL-KAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~-~Ai~~y~~ai~~~p~---~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~ 530 (573)
...-+.....+...|-.. +.+..++..|+.-|+ .+.+|..+|..+...|.+++.+..|++|+.....
T Consensus 102 vn~tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 102 VNKTLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 444455556666666654 666678888887775 5799999999999999999999999999987644
No 483
>PRK10316 hypothetical protein; Provisional
Probab=22.47 E-value=5.1e+02 Score=24.04 Aligned_cols=61 Identities=18% Similarity=0.066 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEA-------IKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAI 525 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~a-------i~~~p~-~~~~~~n~a~~~~~l~~~~~Al~~~~~al 525 (573)
......+|..++.|+.++|++.++-+ +.+-|- ....=.+++..+++.|+|.+|-..++++.
T Consensus 128 ~~Ava~AN~~Lk~Gd~~~A~e~LklAgvdv~~~~al~PL~qT~~~V~~A~~ll~~gkyyeA~~aLk~a~ 196 (209)
T PRK10316 128 EAAIKIANEKMAKGDKKGAMEELRLAGVGVMENQYLMPLKQTRNAVADAQKLLDKGKYYEANLALKGAE 196 (209)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcCcchhhHhHhcCchhhHHHHHHHHHHHhCCChhHHHHHHHhhc
Confidence 34567889999999999999976432 233332 23445678899999999999877776653
No 484
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=22.39 E-value=65 Score=30.52 Aligned_cols=90 Identities=11% Similarity=0.017 Sum_probs=52.0
Q ss_pred HHcCCHHHHHHHHHHHHHhc---CCC---------HHHHHHHHHHHHHcCCH-HHH-HHHHHHHHH-hC-cCc---HHHH
Q 008244 475 YKDKQWLKAISFYTEAIKLN---GNN---------ATYYSNRAAAYLESGSF-LQA-EADCTKAIN-LD-KKV---RLIC 535 (573)
Q Consensus 475 ~~~~~~~~Ai~~y~~ai~~~---p~~---------~~~~~n~a~~~~~l~~~-~~A-l~~~~~al~-l~-p~~---~~~~ 535 (573)
+..|+|+.|++...-||+.+ |+. ++-.++-+....+.|+. +-. +..+..... .+ |+- +.+.
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K 173 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK 173 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 46799999999999999886 332 23344445555556552 222 222222221 11 332 2333
Q ss_pred HHHHHH---------HHHHHHHHHHHHHhhccccCCCC
Q 008244 536 AEAQQE---------RCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 536 ~~~~~~---------~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
..|..+ .-.+..+.|+..++++.+++|..
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 334434 12356778999999999999864
No 485
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=22.22 E-value=7.4e+02 Score=24.18 Aligned_cols=44 Identities=16% Similarity=0.076 Sum_probs=27.3
Q ss_pred HHHHhhcCCCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccC
Q 008244 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY 411 (573)
Q Consensus 351 ~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~ 411 (573)
..+.+++..+|++|.|+.... . +....+ +-.+|+|.|+-+.+..
T Consensus 258 ~~~~~~~~~~d~~l~~s~~e~-~--------~~~~lE--------a~a~g~PvI~~~~~~~ 301 (364)
T cd03814 258 EELAAAYASADVFVFPSRTET-F--------GLVVLE--------AMASGLPVVAPDAGGP 301 (364)
T ss_pred HHHHHHHHhCCEEEECccccc-C--------CcHHHH--------HHHcCCCEEEcCCCCc
Confidence 455667788999999875321 0 011111 1246999999987753
No 486
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=22.19 E-value=7.3e+02 Score=25.47 Aligned_cols=63 Identities=10% Similarity=-0.037 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhc-C--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244 468 KEKGNQAYKDKQWLKAISFYTEAIKLN-G--------NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (573)
Q Consensus 468 ~~~g~~~~~~~~~~~Ai~~y~~ai~~~-p--------~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~ 530 (573)
..+-..|++.++++-+-..++..-..+ | +-...+|.+|.+|+...++.+|...+++|....|+
T Consensus 181 NlL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 181 NLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 446678889999887765543322211 1 23578899999999999999999999999998887
No 487
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=22.03 E-value=2e+02 Score=27.12 Aligned_cols=58 Identities=12% Similarity=-0.055 Sum_probs=43.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHH-HHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 507 AYLESGSFLQAEADCTKAINLDKKVRLI-CAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 507 ~~~~l~~~~~Al~~~~~al~l~p~~~~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
-+++-++..+|+...+.-++-+|.+... ..+-+.+.-.+.|++|+..++....++|..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 4667889999999999999999998422 112233444588999999888888888754
No 488
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=21.42 E-value=6.6e+02 Score=23.31 Aligned_cols=73 Identities=11% Similarity=-0.038 Sum_probs=50.8
Q ss_pred cCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-----HHHHHHHHHHHHHHHHHHH
Q 008244 477 DKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-----RLICAEAQQERCLDITRRQ 550 (573)
Q Consensus 477 ~~~~~~Ai~~y~~ai~~~-p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-----~~~~~~~~~~~~~~~~~~a 550 (573)
.|+ ++|...|-++=... =+++...+.+|..|. ..+.+++++.+.++|++.... ..+..++-.+..++.++.|
T Consensus 120 ~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 120 FGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344 66766664433221 256888888888776 678999999999999987443 3666677777777776665
Q ss_pred H
Q 008244 551 L 551 (573)
Q Consensus 551 l 551 (573)
.
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 3
No 489
>KOG2124 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=20.62 E-value=2.3e+02 Score=32.18 Aligned_cols=86 Identities=15% Similarity=0.075 Sum_probs=51.3
Q ss_pred CCCCceeEEEeccCC-cHHHHHHHHHHHHHHHHHHHhhhhcC---CCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008244 412 DKCPTSVSFIARHGG-DRFLLDTVQNMYASLQEQADIATKSK---LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFY 487 (573)
Q Consensus 412 ~glPvGlq~~~~~~~-d~~ll~~a~~le~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y 487 (573)
.-||+|-.-+.+... +...+++.+-+|+.+..........- ..+-..-..+..+.+.+..+.+.+.++|++|++..
T Consensus 331 g~lPlgyL~vS~~~~~~a~~~Na~qlL~Q~~~~i~~~~~~~f~~~~~~y~~L~~~~~~~y~~~i~~li~~~~~s~ai~~~ 410 (883)
T KOG2124|consen 331 GILPLGYLNVSEEYKAEALHLNALQLLEQYLAKIKLHESGSFYKFLPPYKSLSMTQIEYYLSQIDSLIKKENYSEAIELC 410 (883)
T ss_pred hhccHHHHhccHHHHHHHHHHhHHHHHHHHHHHHHHHhhccHHHhcccccccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 347887777774433 44555555556655433332221111 11111222344567778888899999999999999
Q ss_pred HHHHHhcCCC
Q 008244 488 TEAIKLNGNN 497 (573)
Q Consensus 488 ~~ai~~~p~~ 497 (573)
++.+++.-..
T Consensus 411 ~e~~k~aleg 420 (883)
T KOG2124|consen 411 KELMKLALEG 420 (883)
T ss_pred HHHHHHHHhc
Confidence 9988875443
No 490
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=20.60 E-value=3.6e+02 Score=29.04 Aligned_cols=61 Identities=15% Similarity=0.048 Sum_probs=46.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-c-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 467 AKEKGNQAYKDKQWLKAISFYTEAIKL-N-----------GNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~-~-----------p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
.++....++..|.-.+++++.-.+..- + |--..+|.-.+.||...+.+.+|...+++++..
T Consensus 154 IY~ICr~Lm~~G~s~~vle~L~wa~~cmEssv~L~t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~k 226 (542)
T PF14858_consen 154 IYTICRHLMTAGHSAKVLEYLLWASICMESSVPLLTVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALAK 226 (542)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHhcchhhhcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 456677777888888888886554321 1 223689999999999999999999999998753
No 491
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=20.33 E-value=2.3e+02 Score=17.63 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHH
Q 008244 513 SFLQAEADCTKAINLDKKVRLICAEA 538 (573)
Q Consensus 513 ~~~~Al~~~~~al~l~p~~~~~~~~~ 538 (573)
+++.|-..|++.+...|+-+...+-|
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 45555566666666555554444433
No 492
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.22 E-value=2.4e+02 Score=29.80 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHhC
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA----DCTKAINLD 528 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~----~~~~al~l~ 528 (573)
+....+++...+++|+|.=+.+..++++--+|++..+..-.+.|+.++|--.|+.. ++.-|-+|.
T Consensus 452 adrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A~wRn~yLtgA~ELR 520 (655)
T COG2015 452 ADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAESATWRNFYLTGAYELR 520 (655)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhccchhhhhHHHhHHHHh
Confidence 44567889999999999999999999999999999999999999999996555432 334445543
Done!