Query 008244
Match_columns 573
No_of_seqs 430 out of 2970
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 21:35:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dc0_A Probable amidase; struc 100.0 1.4E-90 4.9E-95 720.0 26.7 404 12-440 2-432 (434)
2 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 1.7E-89 6E-94 722.6 28.5 412 8-441 3-476 (485)
3 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 1.3E-88 4.6E-93 709.8 29.3 405 13-441 3-458 (471)
4 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 1.2E-88 4.1E-93 712.4 28.8 413 8-441 2-469 (478)
5 3a2q_A 6-aminohexanoate-cyclic 100.0 2.6E-88 8.9E-93 715.9 27.0 417 7-441 5-474 (493)
6 1o9p_A Malonamidase E2; malona 100.0 2.9E-87 9.9E-92 690.2 33.8 393 12-442 3-411 (414)
7 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 5.2E-87 1.8E-91 702.9 29.1 407 7-441 6-461 (476)
8 1m22_A Peptide amidase, PAM; e 100.0 1.4E-86 4.7E-91 703.6 24.7 406 5-441 5-484 (503)
9 3a1k_A Amidase; AS family enzy 100.0 1.6E-84 5.3E-89 687.4 30.2 376 52-439 82-499 (521)
10 3ppm_A Fatty-acid amide hydrol 100.0 6.5E-83 2.2E-87 676.5 21.0 419 6-444 66-569 (573)
11 4gco_A Protein STI-1; structur 99.7 8E-17 2.7E-21 138.1 12.7 109 458-566 7-116 (126)
12 4gcn_A Protein STI-1; structur 99.6 2.5E-15 8.5E-20 128.9 11.1 103 460-562 4-114 (127)
13 2hr2_A Hypothetical protein; a 99.6 3.8E-15 1.3E-19 130.5 10.8 102 462-563 9-134 (159)
14 3gyz_A Chaperone protein IPGC; 99.6 2.5E-14 8.5E-19 126.4 13.4 111 453-563 25-136 (151)
15 3upv_A Heat shock protein STI1 99.5 1.7E-13 5.8E-18 116.8 12.2 101 461-561 1-102 (126)
16 3sz7_A HSC70 cochaperone (SGT) 99.5 3.1E-13 1.1E-17 121.0 13.3 110 457-566 4-114 (164)
17 4ga2_A E3 SUMO-protein ligase 99.5 1.5E-13 5E-18 121.4 10.9 107 459-565 26-134 (150)
18 3rkv_A Putative peptidylprolyl 99.5 1.3E-13 4.3E-18 123.3 10.5 106 460-565 7-131 (162)
19 2vgx_A Chaperone SYCD; alterna 99.5 5.1E-13 1.8E-17 117.6 12.7 109 459-567 16-125 (148)
20 2xcb_A PCRH, regulatory protei 99.4 9.8E-13 3.4E-17 114.8 12.5 111 456-566 10-121 (142)
21 1hxi_A PEX5, peroxisome target 99.4 2E-12 7E-17 109.5 14.0 102 464-565 17-119 (121)
22 4gyw_A UDP-N-acetylglucosamine 99.3 4.8E-12 1.6E-16 139.8 12.3 139 424-565 6-145 (723)
23 4gyw_A UDP-N-acetylglucosamine 99.3 7.3E-12 2.5E-16 138.3 13.4 100 462-561 75-175 (723)
24 3q49_B STIP1 homology and U bo 99.3 7.4E-12 2.5E-16 107.8 10.4 104 460-563 5-109 (137)
25 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 1.4E-11 4.9E-16 129.5 13.2 106 460-565 264-385 (457)
26 4gco_A Protein STI-1; structur 99.3 5.4E-11 1.9E-15 101.4 13.7 93 437-538 29-122 (126)
27 1p5q_A FKBP52, FK506-binding p 99.3 1.7E-11 5.8E-16 123.5 12.1 104 461-564 144-263 (336)
28 2lni_A Stress-induced-phosphop 99.3 2.7E-11 9.1E-16 103.2 10.8 110 455-564 7-117 (133)
29 2pl2_A Hypothetical conserved 99.3 3.2E-11 1.1E-15 113.4 12.3 105 461-565 2-118 (217)
30 2l6j_A TPR repeat-containing p 99.3 9.3E-12 3.2E-16 102.8 7.5 93 463-555 3-102 (111)
31 3urz_A Uncharacterized protein 99.2 1.9E-10 6.6E-15 107.2 16.7 94 470-563 60-189 (208)
32 2h6f_A Protein farnesyltransfe 99.2 1.4E-11 4.7E-16 126.2 9.5 104 461-564 128-233 (382)
33 2fbn_A 70 kDa peptidylprolyl i 99.2 5.3E-11 1.8E-15 109.9 12.4 105 460-564 34-155 (198)
34 2dba_A Smooth muscle cell asso 99.2 4.8E-11 1.6E-15 103.7 11.4 108 458-565 22-133 (148)
35 1elw_A TPR1-domain of HOP; HOP 99.2 1.2E-10 4.1E-15 96.6 13.0 103 463-565 3-106 (118)
36 2kck_A TPR repeat; tetratricop 99.2 2.6E-11 9E-16 99.7 8.3 104 461-564 3-110 (112)
37 3urz_A Uncharacterized protein 99.2 3.6E-11 1.2E-15 112.1 10.0 103 463-565 3-122 (208)
38 2c2l_A CHIP, carboxy terminus 99.2 2.7E-11 9.2E-16 118.8 9.5 103 462-564 2-105 (281)
39 2vyi_A SGTA protein; chaperone 99.2 1.8E-10 6.1E-15 97.4 13.1 108 457-564 5-113 (131)
40 2hr2_A Hypothetical protein; a 99.2 8.5E-11 2.9E-15 102.9 11.1 97 435-531 25-135 (159)
41 1zu2_A Mitochondrial import re 99.2 9.8E-11 3.3E-15 102.3 11.3 92 434-534 15-127 (158)
42 2pl2_A Hypothetical conserved 99.2 9.9E-11 3.4E-15 110.0 12.2 101 462-563 71-183 (217)
43 3gyz_A Chaperone protein IPGC; 99.2 2E-10 6.7E-15 101.2 13.1 72 461-532 67-138 (151)
44 1a17_A Serine/threonine protei 99.2 2.2E-10 7.6E-15 101.6 12.7 99 461-559 44-145 (166)
45 1zu2_A Mitochondrial import re 99.2 6.2E-11 2.1E-15 103.5 8.6 90 475-564 13-124 (158)
46 2if4_A ATFKBP42; FKBP-like, al 99.2 3.4E-11 1.2E-15 121.4 8.0 108 460-567 175-300 (338)
47 3vtx_A MAMA; tetratricopeptide 99.2 2.9E-10 1E-14 103.2 13.4 104 462-565 71-175 (184)
48 1ihg_A Cyclophilin 40; ppiase 99.2 6.4E-11 2.2E-15 120.8 9.7 101 463-563 222-339 (370)
49 2h6f_A Protein farnesyltransfe 99.2 9.3E-11 3.2E-15 120.0 10.9 107 458-564 91-199 (382)
50 3vtx_A MAMA; tetratricopeptide 99.2 2.2E-10 7.5E-15 104.0 12.2 103 462-564 37-140 (184)
51 1elr_A TPR2A-domain of HOP; HO 99.1 2.7E-10 9.2E-15 96.3 11.2 102 462-563 2-111 (131)
52 4i17_A Hypothetical protein; T 99.1 2.3E-10 7.7E-15 108.0 11.8 103 463-565 6-110 (228)
53 2xev_A YBGF; tetratricopeptide 99.1 2.7E-10 9.3E-15 96.7 10.4 100 465-564 3-109 (129)
54 2kc7_A BFR218_protein; tetratr 99.1 3.8E-10 1.3E-14 91.2 10.5 92 467-565 3-95 (99)
55 4i17_A Hypothetical protein; T 99.1 8.1E-10 2.8E-14 104.1 13.8 105 461-565 73-214 (228)
56 3ma5_A Tetratricopeptide repea 99.1 2.6E-10 8.8E-15 92.8 8.8 72 460-531 3-74 (100)
57 4ga2_A E3 SUMO-protein ligase 99.1 2.7E-11 9.3E-16 106.7 2.1 98 469-566 2-100 (150)
58 1na3_A Designed protein CTPR2; 99.1 1.6E-09 5.3E-14 85.6 12.3 82 461-542 6-88 (91)
59 2e2e_A Formate-dependent nitri 99.1 7.4E-10 2.5E-14 99.9 11.7 105 462-566 42-150 (177)
60 1na0_A Designed protein CTPR3; 99.1 1.7E-09 5.8E-14 90.4 12.4 102 463-564 8-110 (125)
61 1p5q_A FKBP52, FK506-binding p 99.1 2.7E-09 9.3E-14 107.3 16.1 89 463-551 195-284 (336)
62 2xcb_A PCRH, regulatory protei 99.0 1.9E-09 6.5E-14 93.6 12.7 73 460-532 48-120 (142)
63 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.8E-09 6.2E-14 100.3 13.2 102 463-564 36-154 (213)
64 3qky_A Outer membrane assembly 99.0 1.5E-09 5.1E-14 104.7 13.1 106 460-565 11-131 (261)
65 3sz7_A HSC70 cochaperone (SGT) 99.0 2.4E-09 8.2E-14 95.4 13.4 72 461-532 42-113 (164)
66 3rkv_A Putative peptidylprolyl 99.0 2.9E-09 1E-13 94.6 13.8 73 460-532 59-131 (162)
67 1wao_1 Serine/threonine protei 99.0 1.7E-10 5.9E-15 121.8 6.6 99 464-562 6-105 (477)
68 1xnf_A Lipoprotein NLPI; TPR, 99.0 3.6E-09 1.2E-13 102.1 15.5 106 460-565 39-145 (275)
69 2vgx_A Chaperone SYCD; alterna 99.0 1.7E-09 5.8E-14 94.9 11.9 73 460-532 51-123 (148)
70 2pzi_A Probable serine/threoni 99.0 5.4E-10 1.8E-14 123.5 10.4 103 461-564 464-567 (681)
71 3upv_A Heat shock protein STI1 99.0 3.4E-09 1.2E-13 89.7 13.1 72 461-532 35-112 (126)
72 3k9i_A BH0479 protein; putativ 99.0 1.2E-10 4.1E-15 97.6 3.7 73 460-532 23-95 (117)
73 1a17_A Serine/threonine protei 99.0 6.5E-09 2.2E-13 91.9 15.4 105 461-565 10-115 (166)
74 3uq3_A Heat shock protein STI1 99.0 5.7E-09 1.9E-13 99.4 15.7 102 460-561 135-237 (258)
75 3k9i_A BH0479 protein; putativ 99.0 2.8E-09 9.6E-14 89.1 11.6 90 476-565 2-95 (117)
76 4abn_A Tetratricopeptide repea 99.0 2.3E-09 7.9E-14 113.2 13.4 104 461-564 99-212 (474)
77 1hxi_A PEX5, peroxisome target 99.0 2.1E-09 7.1E-14 90.7 9.3 72 461-532 48-119 (121)
78 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 6.3E-09 2.1E-13 109.3 15.0 91 463-553 316-407 (457)
79 1wao_1 Serine/threonine protei 98.9 4.6E-09 1.6E-13 110.9 13.5 104 461-564 37-154 (477)
80 1ihg_A Cyclophilin 40; ppiase 98.9 9.1E-09 3.1E-13 104.8 14.8 95 459-553 268-363 (370)
81 2fo7_A Synthetic consensus TPR 98.9 1.3E-08 4.5E-13 85.9 13.6 102 462-563 33-135 (136)
82 2fbn_A 70 kDa peptidylprolyl i 98.9 9E-09 3.1E-13 94.7 13.5 96 464-559 88-185 (198)
83 2pzi_A Probable serine/threoni 98.9 1.5E-09 5.2E-14 119.9 9.2 106 459-565 428-534 (681)
84 4eqf_A PEX5-related protein; a 98.9 5.8E-09 2E-13 105.6 12.7 102 463-564 212-314 (365)
85 2vsy_A XCC0866; transferase, g 98.9 1E-08 3.6E-13 110.7 15.3 104 461-564 54-161 (568)
86 2vsy_A XCC0866; transferase, g 98.9 3.8E-09 1.3E-13 114.3 11.7 105 460-564 19-124 (568)
87 4gcn_A Protein STI-1; structur 98.9 9.6E-09 3.3E-13 87.4 11.9 87 437-532 24-117 (127)
88 3qky_A Outer membrane assembly 98.9 6.8E-09 2.3E-13 100.0 12.1 104 461-564 86-228 (261)
89 3as5_A MAMA; tetratricopeptide 98.9 1.3E-08 4.5E-13 91.3 12.9 104 462-565 74-178 (186)
90 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.6E-08 5.6E-13 95.1 14.0 102 464-565 4-130 (225)
91 4abn_A Tetratricopeptide repea 98.9 3.7E-09 1.3E-13 111.7 10.3 100 465-564 171-291 (474)
92 2kat_A Uncharacterized protein 98.9 9.2E-09 3.2E-13 85.5 10.4 71 461-531 16-86 (115)
93 3ieg_A DNAJ homolog subfamily 98.9 1.3E-08 4.6E-13 101.8 13.2 100 463-562 2-102 (359)
94 1fch_A Peroxisomal targeting s 98.9 2.4E-08 8.3E-13 100.7 14.8 123 433-564 193-318 (368)
95 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.3E-08 4.3E-13 94.5 11.6 101 462-565 4-105 (213)
96 2y4t_A DNAJ homolog subfamily 98.9 1.6E-08 5.4E-13 105.3 13.5 108 457-564 19-127 (450)
97 2gw1_A Mitochondrial precursor 98.9 1.2E-08 4.1E-13 107.9 12.8 102 461-563 3-105 (514)
98 3as5_A MAMA; tetratricopeptide 98.8 2.7E-08 9.1E-13 89.2 13.2 104 461-564 39-143 (186)
99 4eqf_A PEX5-related protein; a 98.8 8.2E-09 2.8E-13 104.4 10.8 104 462-565 63-167 (365)
100 3fp2_A TPR repeat-containing p 98.8 7.6E-09 2.6E-13 110.3 10.8 104 461-565 22-126 (537)
101 1qqe_A Vesicular transport pro 98.8 1.5E-08 5.1E-13 99.6 11.9 105 462-566 115-234 (292)
102 3uq3_A Heat shock protein STI1 98.8 1.3E-08 4.5E-13 96.8 11.3 101 461-562 2-110 (258)
103 2fo7_A Synthetic consensus TPR 98.8 2.1E-08 7.2E-13 84.6 11.3 100 465-564 2-102 (136)
104 2r5s_A Uncharacterized protein 98.8 7.1E-09 2.4E-13 93.6 8.7 107 457-564 33-141 (176)
105 2if4_A ATFKBP42; FKBP-like, al 98.8 5.2E-09 1.8E-13 105.3 8.5 101 465-565 231-333 (338)
106 1xnf_A Lipoprotein NLPI; TPR, 98.8 3.7E-08 1.3E-12 94.8 14.2 102 462-563 75-176 (275)
107 2vq2_A PILW, putative fimbrial 98.8 3E-08 1E-12 92.1 12.9 103 461-563 39-145 (225)
108 2q7f_A YRRB protein; TPR, prot 98.8 3.6E-08 1.2E-12 93.0 13.5 100 464-563 125-225 (243)
109 2ho1_A Type 4 fimbrial biogene 98.8 2.1E-08 7.2E-13 95.5 11.9 108 459-566 136-244 (252)
110 2lni_A Stress-induced-phosphop 98.8 3.7E-08 1.3E-12 83.3 12.1 81 462-542 48-129 (133)
111 2vyi_A SGTA protein; chaperone 98.8 4E-08 1.4E-12 82.6 12.2 84 462-545 44-128 (131)
112 2q7f_A YRRB protein; TPR, prot 98.8 2.4E-08 8.3E-13 94.2 12.0 100 464-563 91-191 (243)
113 1w3b_A UDP-N-acetylglucosamine 98.8 2.5E-08 8.5E-13 101.8 12.8 100 464-563 271-371 (388)
114 1w3b_A UDP-N-acetylglucosamine 98.8 1.6E-08 5.6E-13 103.2 11.3 103 462-564 235-338 (388)
115 3q49_B STIP1 homology and U bo 98.8 7.6E-08 2.6E-12 82.2 13.8 69 462-530 41-109 (137)
116 3hym_B Cell division cycle pro 98.8 4.7E-08 1.6E-12 96.7 14.1 105 461-565 190-304 (330)
117 2xev_A YBGF; tetratricopeptide 98.8 1.2E-07 4.1E-12 80.0 14.6 72 461-532 36-110 (129)
118 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.2E-08 7.5E-13 94.3 10.4 107 463-569 77-222 (225)
119 1elw_A TPR1-domain of HOP; HOP 98.8 1E-07 3.5E-12 78.4 13.3 78 462-539 36-114 (118)
120 2c2l_A CHIP, carboxy terminus 98.8 4.4E-08 1.5E-12 95.7 12.8 103 461-563 35-167 (281)
121 3u4t_A TPR repeat-containing p 98.8 1.6E-08 5.6E-13 97.4 9.6 102 463-564 73-175 (272)
122 2kat_A Uncharacterized protein 98.8 1.3E-08 4.4E-13 84.6 7.6 83 481-563 2-85 (115)
123 2dba_A Smooth muscle cell asso 98.8 7.2E-08 2.4E-12 83.3 12.5 71 462-532 63-133 (148)
124 3cv0_A Peroxisome targeting si 98.8 7.2E-08 2.5E-12 95.2 14.0 102 462-563 170-272 (327)
125 3qou_A Protein YBBN; thioredox 98.8 2.6E-08 9E-13 97.6 10.7 103 462-564 115-252 (287)
126 1fch_A Peroxisomal targeting s 98.8 4.2E-08 1.4E-12 99.0 12.6 104 464-567 64-168 (368)
127 1qqe_A Vesicular transport pro 98.8 2.7E-08 9.2E-13 97.8 10.5 106 461-566 74-193 (292)
128 2ho1_A Type 4 fimbrial biogene 98.7 6.9E-08 2.4E-12 91.8 12.9 103 462-564 103-208 (252)
129 3u4t_A TPR repeat-containing p 98.7 3.8E-08 1.3E-12 94.7 11.2 102 462-564 35-141 (272)
130 2vq2_A PILW, putative fimbrial 98.7 9.5E-08 3.3E-12 88.7 12.9 102 461-562 73-178 (225)
131 3hym_B Cell division cycle pro 98.7 1.1E-07 3.7E-12 94.0 13.7 104 461-564 122-226 (330)
132 3mkr_A Coatomer subunit epsilo 98.7 7.1E-08 2.4E-12 94.7 11.9 93 472-564 174-268 (291)
133 1na0_A Designed protein CTPR3; 98.7 2.4E-07 8.1E-12 76.9 13.5 81 462-542 41-122 (125)
134 3cv0_A Peroxisome targeting si 98.7 9E-08 3.1E-12 94.5 12.6 106 462-567 19-125 (327)
135 1elr_A TPR2A-domain of HOP; HO 98.7 1.5E-07 5.2E-12 79.0 11.6 84 462-545 36-126 (131)
136 2v5f_A Prolyl 4-hydroxylase su 98.7 2.8E-07 9.4E-12 75.2 12.4 69 464-532 5-80 (104)
137 3ieg_A DNAJ homolog subfamily 98.6 3.2E-07 1.1E-11 91.6 14.2 98 468-565 124-222 (359)
138 2kck_A TPR repeat; tetratricop 98.6 1.7E-07 5.8E-12 76.3 9.8 70 462-531 38-110 (112)
139 3qou_A Protein YBBN; thioredox 98.6 1.9E-07 6.6E-12 91.4 11.7 98 462-559 183-283 (287)
140 2y4t_A DNAJ homolog subfamily 98.6 3.5E-07 1.2E-11 95.0 14.1 103 461-563 57-175 (450)
141 1dce_A Protein (RAB geranylger 98.6 2.8E-07 9.5E-12 99.1 13.5 104 460-563 59-176 (567)
142 1dce_A Protein (RAB geranylger 98.6 4.2E-07 1.4E-11 97.7 14.7 122 434-564 86-225 (567)
143 4g1t_A Interferon-induced prot 98.6 1.5E-07 5.1E-12 98.6 10.7 105 462-566 49-173 (472)
144 2qfc_A PLCR protein; TPR, HTH, 98.6 4.3E-07 1.5E-11 89.0 13.0 99 462-560 153-266 (293)
145 2ifu_A Gamma-SNAP; membrane fu 98.6 1.4E-07 4.8E-12 93.3 9.5 102 462-565 114-228 (307)
146 3fp2_A TPR repeat-containing p 98.6 2.4E-07 8.2E-12 98.6 11.8 105 462-566 308-413 (537)
147 3mkr_A Coatomer subunit epsilo 98.6 4E-07 1.4E-11 89.4 12.2 105 462-566 128-235 (291)
148 2xpi_A Anaphase-promoting comp 98.5 3.9E-07 1.3E-11 98.4 13.2 104 462-565 473-584 (597)
149 2r5s_A Uncharacterized protein 98.5 3.7E-07 1.3E-11 82.1 10.8 84 476-559 86-172 (176)
150 2ond_A Cleavage stimulation fa 98.5 6.3E-07 2.1E-11 88.6 13.3 102 462-563 48-166 (308)
151 3edt_B KLC 2, kinesin light ch 98.5 2E-07 7E-12 89.6 9.3 102 459-560 80-198 (283)
152 3edt_B KLC 2, kinesin light ch 98.5 3.2E-07 1.1E-11 88.2 10.7 101 460-560 39-156 (283)
153 3u3w_A Transcriptional activat 98.5 2.5E-07 8.4E-12 90.8 9.7 101 462-562 153-268 (293)
154 3ro3_A PINS homolog, G-protein 98.5 3.4E-07 1.2E-11 79.8 9.6 103 461-563 46-161 (164)
155 3bee_A Putative YFRE protein; 98.5 3.4E-07 1.2E-11 72.9 8.5 72 460-531 2-76 (93)
156 2ond_A Cleavage stimulation fa 98.5 7.1E-07 2.4E-11 88.2 12.5 101 462-562 97-200 (308)
157 3dss_A Geranylgeranyl transfer 98.5 3E-06 1E-10 83.9 16.7 104 460-563 104-225 (331)
158 3ma5_A Tetratricopeptide repea 98.5 1.7E-07 5.7E-12 75.8 6.3 71 493-563 2-73 (100)
159 3dra_A Protein farnesyltransfe 98.5 6.5E-07 2.2E-11 88.1 11.5 104 460-563 63-178 (306)
160 2xpi_A Anaphase-promoting comp 98.5 1.2E-06 4.2E-11 94.5 14.8 99 464-562 373-472 (597)
161 2e2e_A Formate-dependent nitri 98.5 2.2E-06 7.6E-11 76.7 13.9 71 462-532 76-149 (177)
162 3dra_A Protein farnesyltransfe 98.4 1.1E-06 3.8E-11 86.4 11.9 103 461-563 100-218 (306)
163 3ro3_A PINS homolog, G-protein 98.4 4E-07 1.4E-11 79.3 7.9 102 461-562 6-120 (164)
164 1ouv_A Conserved hypothetical 98.4 1.1E-06 3.8E-11 84.8 11.6 130 424-562 3-145 (273)
165 4a1s_A PINS, partner of inscut 98.4 8E-07 2.7E-11 91.1 11.0 102 460-561 44-156 (411)
166 3nf1_A KLC 1, kinesin light ch 98.4 5.7E-07 2E-11 87.9 9.1 103 460-562 149-309 (311)
167 4g1t_A Interferon-induced prot 98.4 8E-07 2.7E-11 93.0 10.8 106 459-564 89-208 (472)
168 3q7a_A Farnesyltransferase alp 98.4 1.8E-06 6.2E-11 85.9 12.6 104 460-563 84-199 (349)
169 4f3v_A ESX-1 secretion system 98.4 4.1E-07 1.4E-11 87.7 7.7 104 459-563 131-240 (282)
170 3gw4_A Uncharacterized protein 98.4 1.1E-06 3.9E-11 80.1 10.1 104 459-562 61-178 (203)
171 2gw1_A Mitochondrial precursor 98.4 7E-07 2.4E-11 94.2 9.9 104 462-565 370-483 (514)
172 3ulq_A Response regulator aspa 98.4 7.8E-07 2.7E-11 90.6 9.8 102 459-560 138-253 (383)
173 1pc2_A Mitochondria fission pr 98.4 3.2E-06 1.1E-10 72.9 11.9 70 463-532 31-105 (152)
174 3nf1_A KLC 1, kinesin light ch 98.4 1.3E-06 4.5E-11 85.3 10.5 108 453-560 16-140 (311)
175 3gw4_A Uncharacterized protein 98.4 1.2E-06 4.1E-11 80.0 9.3 100 462-561 24-137 (203)
176 2ifu_A Gamma-SNAP; membrane fu 98.3 4.5E-07 1.6E-11 89.6 6.7 102 461-563 73-187 (307)
177 1ouv_A Conserved hypothetical 98.3 2.1E-06 7.3E-11 82.8 11.3 97 463-562 73-181 (273)
178 2qfc_A PLCR protein; TPR, HTH, 98.3 5.8E-06 2E-10 80.9 13.8 101 462-562 113-227 (293)
179 3ulq_A Response regulator aspa 98.3 1.6E-06 5.3E-11 88.4 10.1 103 460-562 180-295 (383)
180 3ro2_A PINS homolog, G-protein 98.3 1.8E-06 6E-11 85.0 9.9 102 463-564 4-116 (338)
181 3dss_A Geranylgeranyl transfer 98.3 4.9E-06 1.7E-10 82.3 12.7 106 458-563 58-177 (331)
182 3ro2_A PINS homolog, G-protein 98.3 2.4E-06 8.4E-11 84.0 10.3 104 461-564 220-336 (338)
183 3q15_A PSP28, response regulat 98.3 3.2E-06 1.1E-10 85.9 10.8 104 462-565 180-295 (378)
184 3sf4_A G-protein-signaling mod 98.2 2.9E-06 9.7E-11 86.4 9.6 102 462-563 7-119 (406)
185 3q7a_A Farnesyltransferase alp 98.2 1.9E-06 6.6E-11 85.7 7.8 104 460-563 119-240 (349)
186 3sf4_A G-protein-signaling mod 98.2 4.5E-06 1.6E-10 84.8 10.7 102 461-562 224-338 (406)
187 4a1s_A PINS, partner of inscut 98.2 6.4E-06 2.2E-10 84.3 11.8 99 463-561 85-213 (411)
188 3n71_A Histone lysine methyltr 98.2 1.4E-05 4.8E-10 83.9 14.1 102 456-557 343-461 (490)
189 3q15_A PSP28, response regulat 98.2 6.5E-06 2.2E-10 83.6 10.9 101 459-559 136-250 (378)
190 3ly7_A Transcriptional activat 98.2 7E-06 2.4E-10 81.6 10.3 101 464-564 196-343 (372)
191 3u3w_A Transcriptional activat 98.1 4.2E-06 1.4E-10 81.9 8.6 101 464-564 115-229 (293)
192 2ooe_A Cleavage stimulation fa 98.1 1.5E-05 5.1E-10 85.0 12.3 101 462-562 270-387 (530)
193 2l6j_A TPR repeat-containing p 98.0 8.8E-06 3E-10 66.1 7.1 68 497-564 3-71 (111)
194 3rjv_A Putative SEL1 repeat pr 98.0 2.6E-05 8.9E-10 72.3 10.7 99 463-561 84-198 (212)
195 3n71_A Histone lysine methyltr 98.0 1.3E-05 4.6E-10 84.0 9.7 98 464-561 309-423 (490)
196 1na3_A Designed protein CTPR2; 98.0 9.1E-06 3.1E-10 63.4 5.9 69 496-564 7-76 (91)
197 3rjv_A Putative SEL1 repeat pr 97.9 3.1E-05 1E-09 71.8 9.9 95 463-560 49-158 (212)
198 3qww_A SET and MYND domain-con 97.9 2.2E-05 7.6E-10 81.0 9.2 93 469-561 303-412 (433)
199 1hz4_A MALT regulatory protein 97.9 6.1E-05 2.1E-09 76.0 12.2 100 462-561 91-204 (373)
200 2kc7_A BFR218_protein; tetratr 97.9 1.2E-05 4.2E-10 64.1 5.6 62 462-531 32-94 (99)
201 2ooe_A Cleavage stimulation fa 97.9 7.1E-05 2.4E-09 79.7 12.6 102 461-562 318-422 (530)
202 3qww_A SET and MYND domain-con 97.8 5.3E-05 1.8E-09 78.2 10.3 73 456-528 332-412 (433)
203 3qwp_A SET and MYND domain-con 97.8 7.7E-05 2.6E-09 77.0 11.5 99 463-561 286-401 (429)
204 1klx_A Cysteine rich protein B 97.8 0.00017 5.7E-09 61.8 11.8 90 470-562 31-128 (138)
205 4f3v_A ESX-1 secretion system 97.8 1.3E-05 4.6E-10 77.1 5.3 97 464-561 102-201 (282)
206 3bee_A Putative YFRE protein; 97.7 0.0001 3.6E-09 58.3 7.8 70 494-563 2-75 (93)
207 1hz4_A MALT regulatory protein 97.7 0.00014 4.6E-09 73.4 10.5 103 462-564 51-168 (373)
208 3ly7_A Transcriptional activat 97.6 0.00012 4.2E-09 72.7 8.8 94 461-555 274-369 (372)
209 3qwp_A SET and MYND domain-con 97.6 0.00028 9.6E-09 72.8 11.1 74 455-528 320-401 (429)
210 1pc2_A Mitochondria fission pr 97.5 0.00017 6E-09 62.0 7.2 87 479-565 13-105 (152)
211 3u64_A Protein TP_0956; tetrat 97.4 0.00024 8.1E-09 67.8 7.4 68 463-530 198-272 (301)
212 1nzn_A CGI-135 protein, fissio 97.4 0.00074 2.5E-08 55.9 9.3 70 463-532 34-108 (126)
213 2xm6_A Protein corresponding t 97.4 0.0009 3.1E-08 70.3 12.4 95 464-561 328-433 (490)
214 3mv2_B Coatomer subunit epsilo 97.4 0.00077 2.7E-08 65.6 10.7 96 467-562 103-209 (310)
215 1klx_A Cysteine rich protein B 97.4 0.0023 7.9E-08 54.5 12.2 64 463-528 56-127 (138)
216 2xm6_A Protein corresponding t 97.3 0.0011 3.7E-08 69.7 11.1 95 463-560 74-180 (490)
217 1y8m_A FIS1; mitochondria, unk 97.2 0.0042 1.4E-07 52.2 11.8 70 463-532 38-111 (144)
218 3o48_A Mitochondria fission 1 97.2 0.0036 1.2E-07 52.0 11.2 69 464-532 40-112 (134)
219 1xi4_A Clathrin heavy chain; a 97.2 0.0022 7.7E-08 73.6 12.7 91 462-557 1103-1221(1630)
220 1xi4_A Clathrin heavy chain; a 97.2 0.0024 8.1E-08 73.4 12.8 98 465-562 1222-1347(1630)
221 3e4b_A ALGK; tetratricopeptide 97.1 0.00095 3.3E-08 69.5 8.9 90 466-558 178-278 (452)
222 3e4b_A ALGK; tetratricopeptide 97.1 0.0021 7.3E-08 66.8 10.8 93 462-560 246-351 (452)
223 4b4t_Q 26S proteasome regulato 97.1 0.00094 3.2E-08 68.5 7.9 98 462-559 133-244 (434)
224 3ffl_A Anaphase-promoting comp 97.0 0.0024 8.2E-08 55.3 8.5 93 466-558 22-149 (167)
225 3ffl_A Anaphase-promoting comp 96.8 0.0074 2.5E-07 52.2 10.0 64 461-524 60-148 (167)
226 1b89_A Protein (clathrin heavy 96.8 0.002 6.9E-08 65.7 7.6 92 465-561 149-273 (449)
227 3u64_A Protein TP_0956; tetrat 96.8 0.0064 2.2E-07 58.0 10.3 69 496-564 197-273 (301)
228 3mv2_B Coatomer subunit epsilo 96.7 0.002 6.8E-08 62.8 6.7 92 466-562 178-284 (310)
229 4b4t_Q 26S proteasome regulato 96.7 0.0027 9.4E-08 65.0 7.9 67 498-564 135-208 (434)
230 2v5f_A Prolyl 4-hydroxylase su 96.5 0.015 5.1E-07 46.6 9.2 45 461-505 43-87 (104)
231 1b89_A Protein (clathrin heavy 96.1 0.0033 1.1E-07 64.2 4.2 89 465-563 123-239 (449)
232 4gns_B Protein CSD3, chitin bi 95.6 0.065 2.2E-06 58.5 11.6 62 463-524 336-397 (754)
233 1nzn_A CGI-135 protein, fissio 95.4 0.032 1.1E-06 46.1 6.4 89 477-565 14-108 (126)
234 1zbp_A Hypothetical protein VP 95.3 0.14 4.9E-06 48.0 11.4 62 471-532 4-65 (273)
235 4e6h_A MRNA 3'-END-processing 94.3 0.16 5.6E-06 55.1 10.4 99 462-560 341-463 (679)
236 4h7y_A Dual specificity protei 94.2 0.13 4.3E-06 43.7 7.2 99 463-562 12-125 (161)
237 2ff4_A Probable regulatory pro 93.4 0.57 2E-05 47.2 11.9 56 470-525 177-232 (388)
238 3kae_A CDC27, possible protein 93.3 0.53 1.8E-05 40.6 9.4 94 465-563 34-146 (242)
239 4h7y_A Dual specificity protei 92.6 2.8 9.7E-05 35.5 12.9 78 457-535 54-131 (161)
240 4e6h_A MRNA 3'-END-processing 92.0 0.59 2E-05 50.8 10.4 101 463-563 433-536 (679)
241 2ff4_A Probable regulatory pro 91.6 0.75 2.6E-05 46.3 10.1 56 500-555 173-229 (388)
242 4g26_A Pentatricopeptide repea 91.5 2.6 8.8E-05 43.9 14.4 94 464-557 105-201 (501)
243 3txn_A 26S proteasome regulato 89.5 1.6 5.5E-05 43.8 10.1 91 468-558 103-208 (394)
244 2w2u_A Hypothetical P60 katani 88.2 3.8 0.00013 30.8 9.1 31 462-492 17-47 (83)
245 1ya0_A SMG-7 transcript varian 88.1 1.3 4.4E-05 46.0 8.5 66 466-531 154-219 (497)
246 2v6y_A AAA family ATPase, P60 87.7 4.6 0.00016 30.4 9.2 30 463-492 10-39 (83)
247 4b4t_R RPN7, 26S proteasome re 87.6 0.81 2.8E-05 46.8 6.6 96 464-559 131-236 (429)
248 4a5x_A MITD1, MIT domain-conta 84.8 11 0.00037 28.5 10.4 31 462-492 14-44 (86)
249 1wfd_A Hypothetical protein 15 83.7 13 0.00045 28.5 11.0 31 462-492 13-43 (93)
250 3o48_A Mitochondria fission 1 83.4 5.4 0.00018 32.9 8.3 79 486-565 29-112 (134)
251 3kae_A CDC27, possible protein 83.4 6.9 0.00023 33.8 9.0 68 464-531 62-147 (242)
252 4gns_B Protein CSD3, chitin bi 83.3 2.4 8.1E-05 46.3 8.0 61 499-559 338-399 (754)
253 1y8m_A FIS1; mitochondria, unk 82.2 9.5 0.00032 31.9 9.4 71 495-565 36-111 (144)
254 2cpt_A SKD1 protein, vacuolar 81.3 18 0.00061 29.1 10.6 67 462-555 16-84 (117)
255 2crb_A Nuclear receptor bindin 76.7 5.4 0.00018 30.3 5.5 31 462-492 13-43 (97)
256 3spa_A Mtrpol, DNA-directed RN 76.0 24 0.00083 39.7 12.9 71 462-532 125-201 (1134)
257 2uy1_A Cleavage stimulation fa 75.5 10 0.00034 39.3 9.6 51 480-531 195-245 (493)
258 2uy1_A Cleavage stimulation fa 75.5 15 0.00052 37.9 11.0 59 466-524 321-380 (493)
259 2v6x_A Vacuolar protein sortin 75.1 24 0.00081 26.4 10.8 33 461-493 10-42 (85)
260 3ax2_A Mitochondrial import re 74.1 10 0.00034 27.7 6.3 36 466-501 19-54 (73)
261 4g26_A Pentatricopeptide repea 73.5 34 0.0012 35.3 13.1 82 478-559 84-168 (501)
262 3mkq_A Coatomer beta'-subunit; 72.9 24 0.00082 38.5 12.5 55 464-518 681-743 (814)
263 3mkq_B Coatomer subunit alpha; 71.1 15 0.00051 32.0 8.0 45 474-523 15-59 (177)
264 1om2_A Protein (mitochondrial 71.0 9.3 0.00032 29.4 5.8 42 459-500 11-56 (95)
265 1wy6_A Hypothetical protein ST 70.7 27 0.00094 29.0 8.8 62 466-527 92-154 (172)
266 4b4t_P 26S proteasome regulato 70.3 49 0.0017 33.5 13.1 61 464-524 137-203 (445)
267 2w2u_A Hypothetical P60 katani 67.4 8.1 0.00028 29.0 4.8 55 480-549 16-78 (83)
268 2v6y_A AAA family ATPase, P60 67.2 8.1 0.00028 29.0 4.8 53 481-548 9-69 (83)
269 3mkq_A Coatomer beta'-subunit; 65.6 17 0.00058 39.7 9.3 49 471-524 659-707 (814)
270 2crb_A Nuclear receptor bindin 65.4 10 0.00035 28.7 4.9 29 498-526 15-43 (97)
271 3mkq_B Coatomer subunit alpha; 64.9 50 0.0017 28.6 10.1 61 463-523 33-114 (177)
272 2dl1_A Spartin; SPG20, MIT, st 62.9 27 0.00092 27.9 7.1 74 478-559 17-99 (116)
273 4b4t_S RPN3, 26S proteasome re 61.2 16 0.00054 37.7 7.1 69 461-531 228-303 (523)
274 3mv2_A Coatomer subunit alpha; 57.6 75 0.0026 30.4 10.6 25 508-532 217-241 (325)
275 1zbp_A Hypothetical protein VP 57.3 13 0.00043 34.9 5.1 58 507-564 6-64 (273)
276 1wfd_A Hypothetical protein 15 57.3 15 0.00052 28.2 4.8 60 480-554 12-79 (93)
277 2cpt_A SKD1 protein, vacuolar 56.1 14 0.00047 29.8 4.6 33 480-527 15-47 (117)
278 2ijq_A Hypothetical protein; s 55.0 75 0.0026 27.0 9.2 63 464-526 32-103 (161)
279 3mkr_B Coatomer subunit alpha; 52.6 31 0.0011 33.1 7.1 141 392-532 63-232 (320)
280 2v6x_A Vacuolar protein sortin 52.1 21 0.00071 26.7 4.8 57 480-551 10-74 (85)
281 2rpa_A Katanin P60 ATPase-cont 51.9 18 0.00062 26.7 4.2 32 462-493 10-41 (78)
282 2cfu_A SDSA1; SDS-hydrolase, l 48.1 28 0.00095 37.4 6.8 52 464-515 449-500 (658)
283 2vkj_A TM1634; membrane protei 47.3 86 0.003 23.5 7.1 48 462-509 51-101 (106)
284 3t5x_A PCI domain-containing p 46.4 43 0.0015 29.8 6.8 40 459-498 9-48 (203)
285 3txn_A 26S proteasome regulato 43.7 1.6E+02 0.0053 29.2 11.0 67 460-526 135-209 (394)
286 1ya0_A SMG-7 transcript varian 43.3 56 0.0019 33.6 7.9 60 500-559 154-214 (497)
287 4b4t_P 26S proteasome regulato 42.5 1.1E+02 0.0039 30.7 10.1 71 457-527 170-247 (445)
288 4fhn_B Nucleoporin NUP120; pro 38.8 41 0.0014 38.8 6.7 64 467-530 845-931 (1139)
289 3t5v_B Nuclear mRNA export pro 38.1 54 0.0019 33.3 6.7 64 468-531 180-254 (455)
290 4gq2_M Nucleoporin NUP120; bet 37.4 44 0.0015 37.6 6.6 87 470-560 816-926 (950)
291 3ax2_A Mitochondrial import re 37.2 46 0.0016 24.1 4.3 30 502-531 21-50 (73)
292 3myv_A SUSD superfamily protei 36.2 75 0.0026 32.2 7.6 31 497-527 189-219 (454)
293 3re2_A Predicted protein; meni 33.5 1.1E+02 0.0036 29.8 7.3 88 427-527 231-325 (472)
294 3kez_A Putative sugar binding 33.5 82 0.0028 31.9 7.4 32 496-527 194-225 (461)
295 3t5x_A PCI domain-containing p 33.3 90 0.0031 27.7 6.7 34 498-531 14-47 (203)
296 3lew_A SUSD-like carbohydrate 32.3 93 0.0032 31.9 7.6 32 496-527 201-232 (495)
297 4a5x_A MITD1, MIT domain-conta 31.6 72 0.0025 23.9 4.9 54 481-549 14-75 (86)
298 3mcx_A SUSD superfamily protei 31.3 84 0.0029 32.0 7.1 32 497-528 201-232 (477)
299 4b4t_S RPN3, 26S proteasome re 31.0 44 0.0015 34.4 4.7 49 449-497 255-303 (523)
300 2cwy_A Hypothetical protein TT 29.1 1.4E+02 0.0047 22.7 6.2 57 468-526 5-67 (94)
301 2npm_A 14-3-3 domain containin 28.9 1.5E+02 0.005 27.5 7.4 46 481-526 173-226 (260)
302 2br9_A 14-3-3E, 14-3-3 protein 28.1 1.6E+02 0.0053 26.8 7.4 46 481-526 147-201 (234)
303 2dl1_A Spartin; SPG20, MIT, st 27.6 90 0.0031 24.8 4.9 30 463-492 21-50 (116)
304 3okp_A GDP-mannose-dependent a 27.4 2.1E+02 0.0072 27.3 9.1 109 352-494 265-379 (394)
305 4fhn_B Nucleoporin NUP120; pro 26.8 67 0.0023 37.0 5.8 51 470-524 818-868 (1139)
306 2pmr_A Uncharacterized protein 25.8 1.4E+02 0.0049 22.4 5.5 27 462-488 37-63 (87)
307 2ymb_A MITD1, MIT domain-conta 24.3 16 0.00055 33.8 0.0 33 461-493 20-52 (257)
308 1o9d_A 14-3-3-like protein C; 24.3 2E+02 0.0067 26.6 7.4 46 481-526 152-206 (260)
309 3spa_A Mtrpol, DNA-directed RN 24.0 2.6E+02 0.0089 31.7 9.4 70 463-532 164-237 (1134)
310 1om2_A Protein (mitochondrial 23.5 72 0.0025 24.4 3.5 30 502-531 24-53 (95)
311 3uzd_A 14-3-3 protein gamma; s 23.2 2.2E+02 0.0075 26.1 7.4 46 481-526 148-202 (248)
312 2yhe_A SEC-alkyl sulfatase; hy 28.6 18 0.0006 39.0 0.0 54 464-517 461-514 (668)
313 3ubw_A 14-3-3E, 14-3-3 protein 22.7 2.3E+02 0.008 26.1 7.4 46 481-526 173-227 (261)
314 3k66_A Beta-amyloid-like prote 22.6 4.3E+02 0.015 23.8 10.9 67 464-531 88-158 (239)
315 3iqu_A 14-3-3 protein sigma; s 22.5 2.3E+02 0.0078 25.7 7.3 46 481-526 150-204 (236)
316 4gq4_A Menin; tumor suppressor 22.0 2.4E+02 0.0082 28.0 7.6 88 427-527 238-332 (489)
317 2rpa_A Katanin P60 ATPase-cont 21.6 79 0.0027 23.2 3.3 27 501-527 15-41 (78)
318 3qnk_A Putative lipoprotein; a 21.5 1.7E+02 0.0058 30.0 7.3 31 497-527 181-211 (517)
319 3u84_A Menin; MLL, JUND, ledgf 21.3 1.5E+02 0.0052 29.3 6.1 46 482-527 297-347 (550)
320 4b4t_R RPN7, 26S proteasome re 20.6 89 0.0031 31.3 4.7 68 461-528 165-238 (429)
321 2o8p_A 14-3-3 domain containin 20.3 2.8E+02 0.0096 24.9 7.3 50 477-526 138-196 (227)
No 1
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=1.4e-90 Score=720.00 Aligned_cols=404 Identities=25% Similarity=0.334 Sum_probs=341.4
Q ss_pred HhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccCC
Q 008244 12 LGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEG 73 (573)
Q Consensus 12 ~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~~vKD~~~~~g 73 (573)
++.+|+++++.+| + ++| +.|| +|||++..+++|+++|+ +++..||||||||+|||+|+++|
T Consensus 2 ~~~~l~~~~~~g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G 80 (434)
T 2dc0_A 2 DLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKG 80 (434)
T ss_dssp CHHHHHHHHHTTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTSCBTT
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCCCCCcCCeeEEEEeccccCC
Confidence 5677777766554 2 343 7799 99999998877766542 35668999999999999999999
Q ss_pred cccCCCchhhhhcCCCC-CCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHh
Q 008244 74 YVTGFGHPEWARTHSAA-SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVA 152 (573)
Q Consensus 74 ~~tt~Gs~~~~~~~~~~-~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVa 152 (573)
++||+||+.+ . ++ .+|+++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||
T Consensus 81 ~~tt~Gs~~~-~---~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVA 156 (434)
T 2dc0_A 81 MPTRAGTKAP-L---PPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVA 156 (434)
T ss_dssp BCCCTTCSSC-C---CCCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSHHHHHHHH
T ss_pred cccCCCCccc-C---CCCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHH
Confidence 9999999988 2 55 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCcccC--CCC
Q 008244 153 ADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ--RSP 230 (573)
Q Consensus 153 ag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~~--~~~ 230 (573)
+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+. ..+. .++
T Consensus 157 ag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~-~~d~~~~~~ 235 (434)
T 2dc0_A 157 LGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE-SIPLEGVQN 235 (434)
T ss_dssp HTSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS-CCCCCCCCS
T ss_pred cCCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC-CCCcccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998876 3332 345
Q ss_pred ceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHHHHHHHHhh
Q 008244 231 RQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNN 308 (573)
Q Consensus 231 ~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~ 308 (573)
.||++..+.+ ....++++.++++++++.|. |++|++ ++ .| +.+. ...+..+...|.+..
T Consensus 236 lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~--------~p-~~~~-------~~~~~~~~~~e~~~~ 296 (434)
T 2dc0_A 236 PVFGVPLDFL--EGRLGVEVRKAFTRLLEDLPALRAEVRE-VS--------LP-LEGV-------YEVYTRLVRYEAARI 296 (434)
T ss_dssp CEEEECHHHH--TTCSCHHHHHHHHHHHHHTTTTTCEEEE-CC--------CC-CTTH-------HHHHHHHHHHHHHHH
T ss_pred CEEEEECccc--cCCCCHHHHHHHHHHHHHHHHCCCEEEE-eC--------CC-cHHH-------HHHHHHHHHHHHHHH
Confidence 6777765433 23358899999999999986 666532 22 22 2211 223333455566667
Q ss_pred hHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCC---h-HH
Q 008244 309 HNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML---S-ED 384 (573)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~---~-~~ 384 (573)
+..++....+.+++.++.++..+..++..+|.++++.|..+++++.++|+++|+||+||+|.++|+++..... . ..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~ 376 (434)
T 2dc0_A 297 HEKALKEHPEGFSPQVREALLAGLALTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKG 376 (434)
T ss_dssp SHHHHHHCGGGSCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEEEE
T ss_pred HHHHHHhchhhcCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCCCCCccCcccccccccchhh
Confidence 7777777777899999999999999999999999999999999999999999999999999999999865210 0 11
Q ss_pred HHHhhhhhhccccccCCceeeecCccCCCCCceeEEEeccCCcHHHHHHHHHHHHH
Q 008244 385 YQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS 440 (573)
Q Consensus 385 ~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~~a~~le~~ 440 (573)
....+..||.++|++|+|+||||+|+.+|||+|||++|++++|..||+++..+|++
T Consensus 377 ~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~ 432 (434)
T 2dc0_A 377 HREAFITLTLPFSLLGVPTLALPFAKVEGMPVGLQVVGAYGEDGKVLALGGWLEAR 432 (434)
T ss_dssp HHHHHHTTTHHHHHTTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHTT
T ss_pred hhhhhhhhhhhhhhhCCCeEEEecCCCCCCCeEEEEECCCCchHHHHHHHHHHHHh
Confidence 11233568999999999999999998889999999999999999999999999864
No 2
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=1.7e-89 Score=722.60 Aligned_cols=412 Identities=22% Similarity=0.277 Sum_probs=333.8
Q ss_pred hHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCC--------CCCCCCCCCCCceeeeecc
Q 008244 8 LWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQP--------LPPKAPHPLTGLSFAVSDL 68 (573)
Q Consensus 8 ~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a--------~~~~~~gpL~Gvp~~vKD~ 68 (573)
+..+|+++|+++++.+| + ++| +.||.+|||++...++|+++| +.++. ||||||||+|||+
T Consensus 3 l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~-gpL~GvPi~vKD~ 81 (485)
T 3ip4_A 3 IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMD-GKLFGIPMGIKDN 81 (485)
T ss_dssp GGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCC-STTTTCEEEEETT
T ss_pred cccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCCC-CCcCCCEEEEEcC
Confidence 55678999999977665 2 244 779999999999887766554 33555 9999999999999
Q ss_pred cccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHH
Q 008244 69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA 148 (573)
Q Consensus 69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsa 148 (573)
|+++|++||+||+.+.+ +++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+|||||||||
T Consensus 82 ~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgGsA 159 (485)
T 3ip4_A 82 IITNGLETTCASKMLEG--FVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSA 159 (485)
T ss_dssp BCBTTBCCCTTSGGGTT--CCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHH
T ss_pred cccCCCccCCCChhhcC--CCCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccHHH
Confidence 99999999999999876 4889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc--
Q 008244 149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-- 226 (573)
Q Consensus 149 aaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~-- 226 (573)
|+||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+
T Consensus 160 aaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~d~~d~~ 239 (485)
T 3ip4_A 160 AAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDST 239 (485)
T ss_dssp HHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTT
T ss_pred HHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCCCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987654221
Q ss_pred ---------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhh
Q 008244 227 ---------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKT 289 (573)
Q Consensus 227 ---------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~ 289 (573)
..++.||++..+.+. ...++++.++++++++.|. |++|++ +++ |.+...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~lrigv~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------p~~~~~--- 305 (485)
T 3ip4_A 240 SAPVDDVDFTSEIGKDIKGLKVALPKEYLG--EGVADDVKEAVQNAVETLKSLGAVVEE-VSL--------PNTKFG--- 305 (485)
T ss_dssp SCCCCCCCCSTTTTCCCTTCEEEEEGGGGS--TTSCHHHHHHHHHHHHHHHHTTCEEEE-ECC--------TTGGGH---
T ss_pred ccccCccchhhhhccCccCcEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CcHHHH---
Confidence 124567777655432 2358899999999999986 777643 222 222211
Q ss_pred hhhHHHHHHHHHHHHHHhhh------------------HH-HHHhhCCCCCHHHHHHHHHhhc-----CCHHHHHHHHHH
Q 008244 290 NGELKNVMRLIQRYEFKNNH------------------NE-WIESVKPALDPDISAEIGEMLE-----ISETVIENCKSI 345 (573)
Q Consensus 290 ~~~l~~~~~~~~~~e~~~~~------------------~~-~~~~~~~~~~~~~~~~~~~g~~-----~s~~~~~~a~~~ 345 (573)
...+..+...|+...+ .+ +.....+.+++.++.++..+.. ....+|.++++.
T Consensus 306 ----~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~ 381 (485)
T 3ip4_A 306 ----IPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKV 381 (485)
T ss_dssp ----HHHHHHHHHHHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHhhhhhhccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHH
Confidence 1122222222322211 11 1122234578888888876642 223458899999
Q ss_pred HHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccCCCCCceeEEEeccC
Q 008244 346 RNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHG 425 (573)
Q Consensus 346 r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlq~~~~~~ 425 (573)
|..+++++.++|+++|+||+||+|.+||+++....+..... ....||.+||++|+|+||||+|+++|||+|||++|+++
T Consensus 382 r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlqlvg~~~ 460 (485)
T 3ip4_A 382 RTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMY-ANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPF 460 (485)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESSSSSCCBTTTSTTCHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECSTT
T ss_pred HHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCChHHHh-hhhhhhhhhHhhCCCeEEEeCCcCCCCCEeEEEEcCCC
Confidence 99999999999999999999999999999987543332221 11238999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHH
Q 008244 426 GDRFLLDTVQNMYASL 441 (573)
Q Consensus 426 ~d~~ll~~a~~le~~l 441 (573)
+|..||++++++|+.+
T Consensus 461 ~d~~lL~~A~~lE~~~ 476 (485)
T 3ip4_A 461 DEKTLYRVAYQYETQY 476 (485)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999999754
No 3
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-88 Score=709.80 Aligned_cols=405 Identities=24% Similarity=0.350 Sum_probs=331.1
Q ss_pred hhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCch
Q 008244 13 GLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHP 81 (573)
Q Consensus 13 ~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~~~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~ 81 (573)
+++|+++++.+| + ++| +.||.+|||++.. ++++++|++.....|||||||+|||+|+++|++||+||+
T Consensus 3 a~~l~~~~~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~~~pL~GvPi~vKD~~~~~G~~tt~Gs~ 81 (471)
T 3kfu_E 3 AHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPGLPLAGLVVAVKDNIATRGLRTTAGSR 81 (471)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCCSCTTTTCEEEEETTBCCTTSCCCTTCS
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCccCCcCCCeEEEECCcccCCccccccCH
Confidence 567777765554 2 244 7799999999999 888887765444559999999999999999999999999
Q ss_pred hhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCccccc
Q 008244 82 EWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLG 161 (573)
Q Consensus 82 ~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~G 161 (573)
.+.+ +++.+|+++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+|++|+|+|
T Consensus 82 ~~~~--~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~a~G 159 (471)
T 3kfu_E 82 LLEN--FVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALG 159 (471)
T ss_dssp TTTT--CCCSSCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEE
T ss_pred hHcC--CCCCCChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCcCCCCCcHHHHHHHHCCCCccccc
Confidence 9876 47889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc---------------
Q 008244 162 IDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--------------- 226 (573)
Q Consensus 162 tD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~--------------- 226 (573)
||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+
T Consensus 160 tDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~ 239 (471)
T 3kfu_E 160 SDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLPPRFQEALE 239 (471)
T ss_dssp EESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTCTTCCCCCCCTTCCSC
T ss_pred cCCCCccccChhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCCcccccccCCCcchhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999987654221
Q ss_pred -CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHHHHH
Q 008244 227 -QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRY 303 (573)
Q Consensus 227 -~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~~~ 303 (573)
..++.||++..+.+ ...++++.++++++++.|. |++|++ ++ .|.+... ...+..+...
T Consensus 240 ~~~~~lrIgv~~~~~---~~~~p~v~~a~~~a~~~L~~~G~~v~~-v~--------~p~~~~~-------~~~~~~~~~~ 300 (471)
T 3kfu_E 240 GPLPPLRLGVVREAL---AGNSPGVERALEEALKVFRELGLSVRE-VS--------WPSLPQA-------LAAYYILAPA 300 (471)
T ss_dssp CCCSSCEEEEEGGGT---TTCCHHHHHHHHHHHHHHHTTTCEEEE-EC--------CTTGGGH-------HHHHHHHHHH
T ss_pred cCCCCCEEEEECCcc---CCCCHHHHHHHHHHHHHHHHcCCeeee-ec--------CccHHHH-------HHHHHHHHHH
Confidence 12345677665543 3358899999999999986 776643 22 2322221 1122222223
Q ss_pred HHHh-----------------hhHHHHHhhCCCCCHHHHHHHHHhhcC-----CHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 008244 304 EFKN-----------------NHNEWIESVKPALDPDISAEIGEMLEI-----SETVIENCKSIRNEMRSAISSLLKDDG 361 (573)
Q Consensus 304 e~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~~-----s~~~~~~a~~~r~~~~~~~~~~~~~~D 361 (573)
|+.. .+.+++......+++.++.++..+..+ +..+|.++++.|..++++|.++|+++|
T Consensus 301 e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D 380 (471)
T 3kfu_E 301 EASSNLARYDGTLYGRRAAGEEVEGMMEATRALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVD 380 (471)
T ss_dssp HHHHHGGGCSTTTTSCCCCCSSSHHHHHHHHTTSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHhhhhccccccchhhHHHHHHhhhhhcCHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3221 122333333334899999988776433 335899999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccCCCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008244 362 ILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASL 441 (573)
Q Consensus 362 vLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~~a~~le~~l 441 (573)
+||+||+|.+||+++....+...+... .||.+||++|+|+||||+|+.+|||+|||++|++++|..||+++.++|+..
T Consensus 381 vll~Pt~~~~a~~~~~~~~~~~~~~~~--~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~~ 458 (471)
T 3kfu_E 381 LLLLPTTPHPAFPFGARRDPLAMYRED--LYTVGANLTGLPALSFPAGFEGHLPVGLQLLAPWGEDERLLRAALAFEEAT 458 (471)
T ss_dssp EEEEESCSSSCCBTTTTCSHHHHHGGG--TTTHHHHHHCCCEEEEEEEEETTEEEEEEEECSTTCHHHHHHHHHHHHHHS
T ss_pred EEEeCCcCCCCCccccccchHHHHHHh--hhhhcchhhCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 999999999999998753322223222 289999999999999999998899999999999999999999999999653
No 4
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=1.2e-88 Score=712.35 Aligned_cols=413 Identities=24% Similarity=0.320 Sum_probs=334.7
Q ss_pred hHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCCCCCC-CCCCCCceeeeecccccCCcc
Q 008244 8 LWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKA-PHPLTGLSFAVSDLFDIEGYV 75 (573)
Q Consensus 8 ~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~~~~~-~gpL~Gvp~~vKD~~~~~g~~ 75 (573)
|+.+|+.+|+++++.+| + ++| +.||.+|||++...++|+++|++... .||||||||+|||+|+++|++
T Consensus 2 l~~~sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~gpL~GvPi~vKD~~~~~G~~ 81 (478)
T 3h0l_A 2 LWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKERELPLFGIPIAVKDNILVEGEK 81 (478)
T ss_dssp CTTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCTTSTTTTCEEEEETTBCCTTSB
T ss_pred CCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchhcCCcCCceEEEEcCccCCCCC
Confidence 34567889998876665 2 244 77999999999988777666543322 799999999999999999999
Q ss_pred cCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcC
Q 008244 76 TGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADL 155 (573)
Q Consensus 76 tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~ 155 (573)
||+||+.+.+ +++.+|+++|+||++||||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+|+
T Consensus 82 tt~Gs~~~~~--~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~ 159 (478)
T 3h0l_A 82 TTCASKILEN--FVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLS 159 (478)
T ss_dssp CCTTCGGGTT--CBCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTBCCCSSSHHHHHHHHHTS
T ss_pred cCCcCHhhcC--CCCCCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCCCCCcchHHHHHHHHCCC
Confidence 9999999876 47899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc---------
Q 008244 156 VDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--------- 226 (573)
Q Consensus 156 ~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~--------- 226 (573)
+|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+
T Consensus 160 ~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~~~~~p~~ 239 (478)
T 3h0l_A 160 APVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVP 239 (478)
T ss_dssp SSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTTSCCCCCC
T ss_pred CceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHHhcCCCcccccccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999988654322
Q ss_pred --------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHH
Q 008244 227 --------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNV 296 (573)
Q Consensus 227 --------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~ 296 (573)
..++.||++..+.+. ...++++.++++++++.|. |++|++ ++ .|.+... ...
T Consensus 240 ~~~~~~~~~~~~lrIgv~~~~~~--~~~~p~v~~a~~~a~~~L~~~G~~v~~-v~--------~p~~~~~-------~~~ 301 (478)
T 3h0l_A 240 EWSEEVKKEVKGLKIGLPKEFFE--YELQPQVKEAFENFIKELEKEGFEIKE-VS--------LPHVKYS-------IPT 301 (478)
T ss_dssp CHHHHTTCCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTTCEEEE-EC--------CTTGGGH-------HHH
T ss_pred chhhhhccCCCCCEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eC--------CCcHHHH-------HHH
Confidence 124567777655432 3358899999999999986 777643 22 2222211 112
Q ss_pred HHHHHHHHHHhhh------------------HH-HHHhhCCCCCHHHHHHHHHhhc-----CCHHHHHHHHHHHHHHHHH
Q 008244 297 MRLIQRYEFKNNH------------------NE-WIESVKPALDPDISAEIGEMLE-----ISETVIENCKSIRNEMRSA 352 (573)
Q Consensus 297 ~~~~~~~e~~~~~------------------~~-~~~~~~~~~~~~~~~~~~~g~~-----~s~~~~~~a~~~r~~~~~~ 352 (573)
+..+...|+...+ .+ +.....+.+++.++.++..+.. ....+|.++++.|..++++
T Consensus 302 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~ 381 (478)
T 3h0l_A 302 YYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITND 381 (478)
T ss_dssp HHHHHHHHHHHHTTTCSSSSSSCCCSCCSSHHHHHHHHHHHHSCHHHHHHHHHHHHHTSTTTTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccHHHHHHHhhhhhcCHHHHHHHHhhchhccchhhHHHHHHHHHHHHHHHHH
Confidence 2222233332221 11 1122234578888888877642 2234688999999999999
Q ss_pred HHhhcCCCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccCCCCCceeEEEeccCCcHHHHH
Q 008244 353 ISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLD 432 (573)
Q Consensus 353 ~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~ 432 (573)
|.++|+++|+||+||+|.+||+++....+..... ....||.+||++|+|+||||+|+.+|||+|||++|++++|..||+
T Consensus 382 ~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~LL~ 460 (478)
T 3h0l_A 382 FLKAFEEVDVIASPTTPTLPFKFGERLENPIEMY-LSDILTVPANLAGLPAISIPIAWKDGLPVGGQLIGKHWDETTLLQ 460 (478)
T ss_dssp HHHHTTTCSEEEEESCSSSCCBTTTTSSSHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEEECTTCHHHHHH
T ss_pred HHHHHhcCCEEEcCCCCCCCCCcccccCChHhhh-hhhhhhhhhHhhCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHH
Confidence 9999999999999999999999987543332221 122489999999999999999998999999999999999999999
Q ss_pred HHHHHHHHH
Q 008244 433 TVQNMYASL 441 (573)
Q Consensus 433 ~a~~le~~l 441 (573)
++.++|+.+
T Consensus 461 ~A~~lE~~~ 469 (478)
T 3h0l_A 461 ISYLWEQKF 469 (478)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 999999754
No 5
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=2.6e-88 Score=715.88 Aligned_cols=417 Identities=18% Similarity=0.231 Sum_probs=341.2
Q ss_pred hhHHHHhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCCCCCCCCCCCCceeeeeccc-ccCCc
Q 008244 7 NLWVLLGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLF-DIEGY 74 (573)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~~~~~~gpL~Gvp~~vKD~~-~~~g~ 74 (573)
++.. |+.+|+++++.++ + ++| +.||.+|||++...++|+++|++ . .||||||||+|||+| +++|+
T Consensus 5 ~~~~-~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d-~gpL~GvPi~vKD~~~~v~G~ 81 (493)
T 3a2q_A 5 DLWQ-DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A-SGPFAGVPYLLKDLTVVSQGD 81 (493)
T ss_dssp CTTS-CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C-CSTTTTCEEEEESSSSCCTTS
T ss_pred hhhh-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c-CCCcCCcEEEEecCCcCcCCC
Confidence 3555 8999999977665 2 244 77999999999988877766654 3 799999999999999 99999
Q ss_pred ccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhc
Q 008244 75 VTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAAD 154 (573)
Q Consensus 75 ~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag 154 (573)
+||+||+.+....+++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+|
T Consensus 82 ~Tt~Gs~~~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAAAVAaG 161 (493)
T 3a2q_A 82 INTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAA 161 (493)
T ss_dssp BCCTTCHHHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTBCCCSSSHHHHHHHHTT
T ss_pred cccccChhhhhcCCCCCCCHHHHHHHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcC
Confidence 99999999982124889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCcccccccccCcccccCCCCccccCCC--C-CCCCCCCcccccccCHHHHHHHHHHhcCCCccc-----
Q 008244 155 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGI--I-PISTSLDTVGWFARDPKILRHVGHVLLQLPFAA----- 226 (573)
Q Consensus 155 ~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~--~-p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~----- 226 (573)
++|+|+|||||||||+||+||||||||||+||||+.|+ + |+++++|++|||+|+++|+..+++++.+.+..+
T Consensus 162 ~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~ 241 (493)
T 3a2q_A 162 LSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAP 241 (493)
T ss_dssp SCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHHHHHHHBSCCTTCSCCCC
T ss_pred CCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHHHHHHHHcCCCCCCccccc
Confidence 99999999999999999999999999999999999998 5 788899999999999999999999988653211
Q ss_pred ------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhh
Q 008244 227 ------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGE 292 (573)
Q Consensus 227 ------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~ 292 (573)
..++.||++..+.+......++++.++++++++.|. |++|++ +++ |.+.. ..
T Consensus 242 ~p~~~~~~~~~~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------~~~~~-----~~ 307 (493)
T 3a2q_A 242 TASRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGHDVND-AYP--------EALGD-----RS 307 (493)
T ss_dssp CCSSCHHHHTTSCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHTTCEEEE-CCC--------GGGGC-----CT
T ss_pred CCCcchhhhcccCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CccCH-----HH
Confidence 123456776655431012358899999999999986 777643 221 11110 00
Q ss_pred HHHHHHHHHHHHHHh---hhHHHHH--hhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhc-CCCCEEEEc
Q 008244 293 LKNVMRLIQRYEFKN---NHNEWIE--SVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLL-KDDGILVTP 366 (573)
Q Consensus 293 l~~~~~~~~~~e~~~---~~~~~~~--~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~-~~~DvLl~P 366 (573)
+...+..+...|.+. .+..++. .....+++.++.++..+..++..+|.++++.|..+++++.++| +++|+||+|
T Consensus 308 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~ll~P 387 (493)
T 3a2q_A 308 FLKDYSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILP 387 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTTSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccChhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcC
Confidence 112223333344443 3334442 2345789999999999999999999999999999999999999 999999999
Q ss_pred CCCCCCCCCCCCCCC------------hHHHHHhhhhhhccccccCCceeeecCccC-CCCCceeEEEeccCCcHHHHHH
Q 008244 367 TTAYPPPKLGGKEML------------SEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDT 433 (573)
Q Consensus 367 t~~~~ap~~~~~~~~------------~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlq~~~~~~~d~~ll~~ 433 (573)
|+|.+||+++..... ...+ ..+..||.+||++|+|+||||+|++ +|||+|||++|++++|..||++
T Consensus 388 t~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGvQlvg~~~~d~~lL~~ 466 (493)
T 3a2q_A 388 TVTRQTPEIGELMLAKGTDLEGRQSAFISGS-LQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQV 466 (493)
T ss_dssp SCSSCCCBTTTTCCCTTCCCCSSCGGGSHHH-HHHHTTTTHHHHHCCCEEEEEEEECTTSCEEEEEEEESTTCHHHHHHH
T ss_pred CCCCCCCCCcccccccccccccccchhhhhh-hhhhcccccccccCCCceeccCCcCCCCCCeEEEEecCCCChHHHHHH
Confidence 999999999865321 1112 2345689999999999999999986 9999999999999999999999
Q ss_pred HHHHHHHH
Q 008244 434 VQNMYASL 441 (573)
Q Consensus 434 a~~le~~l 441 (573)
+..+|+.+
T Consensus 467 A~~lE~~~ 474 (493)
T 3a2q_A 467 AAQLEGAL 474 (493)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhc
Confidence 99999754
No 6
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=2.9e-87 Score=690.25 Aligned_cols=393 Identities=22% Similarity=0.269 Sum_probs=333.6
Q ss_pred HhhhhhhHHHHHH-----H----Hhh--hhcCcccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCc
Q 008244 12 LGLGLAGILLMTK-----K----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGH 80 (573)
Q Consensus 12 ~~~~l~~~~~~~~-----~----~~~--~~~~~~na~~~~~~~~~~~~a~~~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs 80 (573)
|+.+|+++++.+| + ++| +.||.+|||++..++++ + ...||||||||+|||+|+++|++||+||
T Consensus 3 ~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~-----~~~gpL~GvPi~vKD~~~v~G~~tt~Gs 76 (414)
T 1o9p_A 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A-----QASGPLRGIAVGIKDIIDTANMPTEMGS 76 (414)
T ss_dssp CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C-----CSSSTTTTCEEEEETTBCCSSSCCCTTS
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c-----ccCCCcCCCEEEEEcccccCCcccCcCC
Confidence 5777888866555 2 243 77999999999988776 2 4579999999999999999999999999
Q ss_pred hhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCcccc
Q 008244 81 PEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSL 160 (573)
Q Consensus 81 ~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~a~ 160 (573)
+.|.+. ++.+|+++|+|||+||||++||||||||++ .|+ |+|+||||++|+||||||||||+||+|++|+|+
T Consensus 77 ~~~~~~--~~~~dA~~V~rL~~aGAii~GKTn~~Efa~----~n~--G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~al 148 (414)
T 1o9p_A 77 EIYRGW--QPRSDAPVVMMLKRAGATIIGKTTTTAFAS----RDP--TATLNPHNTGHSPGGASSGSAAAVGAGMIPLAL 148 (414)
T ss_dssp GGGTTC--CCSSCCHHHHHHHHTTCEEEEEECCCGGGS----SCC--CSCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEE
T ss_pred HhhccC--CCCCCHHHHHHHHHCCCEEEEecCCchhhc----CCC--CCCCCCCCCCCCCCcchHHHHHHHHcCCCceEE
Confidence 999864 788999999999999999999999999998 444 999999999999999999999999999999999
Q ss_pred ccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCcc---cCCCCceEEEcc
Q 008244 161 GIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFA---AQRSPRQIIIAD 237 (573)
Q Consensus 161 GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~---~~~~~~rl~i~~ 237 (573)
|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+.. ...++.||++..
T Consensus 149 GtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~~~~~~~~~~lrig~~~ 228 (414)
T 1o9p_A 149 GTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVR 228 (414)
T ss_dssp EEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSCCCCSSCEEEECC
T ss_pred eeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHHhcCCCccccccCCCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999998875421 123456777765
Q ss_pred cchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHHh
Q 008244 238 DCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIES 315 (573)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~ 315 (573)
+.+. ...++++.++++++++.|. |++|++ .+ .|...+. +...+..+..+|.+..+..++..
T Consensus 229 ~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~--------~~~~~~~------~~~~~~~~~~~e~~~~~~~~~~~ 291 (414)
T 1o9p_A 229 QEFA--GAVEPAAEQGLQAAIKAAERAGASVQA-ID--------LPEAVHE------AWRIHPIIQDFEAHRALAWEFSE 291 (414)
T ss_dssp CGGG--CCCCHHHHHHHHHHHHHHHHTTCEEEE-CC--------CCHHHHH------HHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-ec--------CcchHHH------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 5432 3358899999999999886 666532 11 2211110 22233445556777778888877
Q ss_pred hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhcc
Q 008244 316 VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSI 395 (573)
Q Consensus 316 ~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~ 395 (573)
..+.+++.++.++..+..++..+|.++++.|..+++++.++|+++|+||+||+|.++|+++..... ...||.+
T Consensus 292 ~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~-------~~~~t~~ 364 (414)
T 1o9p_A 292 HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTG-------DPRYNRL 364 (414)
T ss_dssp SGGGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCCCC-------CGGGTHH
T ss_pred ChhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccccCCc-------ccchhhh
Confidence 778899999999999999999999999999999999999999999999999999999998643211 1258999
Q ss_pred ccccCCceeeecCccCCCCCceeEEEeccCCcHHHHHHHHHHHHHHH
Q 008244 396 ASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442 (573)
Q Consensus 396 ~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~~a~~le~~l~ 442 (573)
||++|+|+||||+|++.|||+|||++|++++|..||+++..+|+++.
T Consensus 365 ~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~a~~le~~~~ 411 (414)
T 1o9p_A 365 WTLMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHALATAWFLEDALA 411 (414)
T ss_dssp HHHHCCCEEEEEEEEETTEEEEEEEEESTTCHHHHHHHHHHHHHHHH
T ss_pred hHhcCCCeEEeeCCCCCCCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence 99999999999999877999999999999999999999999998764
No 7
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=5.2e-87 Score=702.93 Aligned_cols=407 Identities=21% Similarity=0.285 Sum_probs=325.0
Q ss_pred hhHHHHhhhhh--hHHHHHHH----Hhh--hhcCcccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCC
Q 008244 7 NLWVLLGLGLA--GILLMTKK----LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGF 78 (573)
Q Consensus 7 ~~~~~~~~~l~--~~~~~~~~----~~~--~~~~~~na~~~~~~~~~~~~a~~~~~~gpL~Gvp~~vKD~~~~~g~~tt~ 78 (573)
++..+++.+|- +.++..|+ ++| +.||.+|||++..++++++ + . ||||||||+|||+|+++|++||+
T Consensus 6 ~~~~~s~~~li~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~ald-~----~-gpL~GvPi~vKD~~~v~G~~Tt~ 79 (476)
T 2gi3_A 6 DFRKLTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVE-K----K-GKFWGIPVAIKDNILTLGMRTTC 79 (476)
T ss_dssp CGGGCCHHHHTTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCCC-C----C-STTTTCEEEEETTBCCSSSCCCT
T ss_pred ccccCCHHHHHHcCCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhhh-c----c-CCcCCceEEEEcCccCCCCccCc
Confidence 44445666651 11444443 233 7799999999999888772 2 2 99999999999999999999999
Q ss_pred CchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhcCCcc
Q 008244 79 GHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDF 158 (573)
Q Consensus 79 Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag~~~~ 158 (573)
||+.+.+ +++.+||++|+|||+||||++||||||||+++.+|+|++||+|+||||++|+||||||||||+||+|++|+
T Consensus 80 Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaAVAag~~~~ 157 (476)
T 2gi3_A 80 ASRILEN--YESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVA 157 (476)
T ss_dssp TCGGGTT--CCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSSSE
T ss_pred cChhhcC--CCCCCChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHcCCCce
Confidence 9999976 48899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHHhcCCCccc------------
Q 008244 159 SLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA------------ 226 (573)
Q Consensus 159 a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~~~~~~~~~------------ 226 (573)
|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..+
T Consensus 158 alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~p~~~~~ 237 (476)
T 2gi3_A 158 ALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLS 237 (476)
T ss_dssp EEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTBTTCCSCCCCSST
T ss_pred EeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHHhhCCCCCCccccCCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999987653221
Q ss_pred ----CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhhhhHHHHHHHH
Q 008244 227 ----QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLI 300 (573)
Q Consensus 227 ----~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~~~l~~~~~~~ 300 (573)
..++.||++..+.+. ...++++.++++++++.|. |++|++ +++ |.+... ...+..+
T Consensus 238 ~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------p~~~~~-------~~~~~~~ 299 (476)
T 2gi3_A 238 EIEEGVSGMKFAVPEEIYE--HDIEEGVSERFEEALKLLERLGAKVER-VKI--------PHIKYS-------VATYYVI 299 (476)
T ss_dssp TTTSCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTTCEEEE-ECC--------TTGGGH-------HHHHHHH
T ss_pred hhhcCCCCCEEEEECcccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CchHHH-------HHHHHHH
Confidence 123467777655431 2357899999999999886 777643 222 222111 1111122
Q ss_pred HHHHHHhhh-----------------HHHHHh-hCCCCCHHHHHHHHHhhcCCH-----HHHHHHHHHHHHHHHHHHhhc
Q 008244 301 QRYEFKNNH-----------------NEWIES-VKPALDPDISAEIGEMLEISE-----TVIENCKSIRNEMRSAISSLL 357 (573)
Q Consensus 301 ~~~e~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~g~~~s~-----~~~~~a~~~r~~~~~~~~~~~ 357 (573)
...|....+ .+++.. ..+.+++.++.++..+..++. .+|.++++.|..++++++++|
T Consensus 300 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~ 379 (476)
T 2gi3_A 300 APAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVL 379 (476)
T ss_dssp HHHHHHTC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222221 112221 235678888888887765443 378899999999999999999
Q ss_pred CCCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccCCCCCceeEEEeccCCcHHHHHHHHHH
Q 008244 358 KDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNM 437 (573)
Q Consensus 358 ~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlq~~~~~~~d~~ll~~a~~l 437 (573)
+++|+||+||+|.+||+++........+. ...||.++|++|+|+||||+|+++|||+|||++|++++|..||+++..+
T Consensus 380 ~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~--~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~l 457 (476)
T 2gi3_A 380 SQYDAILTPTSPVTAFKIGEIKDPLTYYL--MDIFTIPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFRIARAI 457 (476)
T ss_dssp HHSSEEEEESCSSCCCBTTTCCCHHHHHT--TTTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHH
T ss_pred hcCCEEEeCCCCCCCCcccccccchhhhh--ccceeccccccCCceEEEecccCCCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 99999999999999999986211222222 1358999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 008244 438 YASL 441 (573)
Q Consensus 438 e~~l 441 (573)
|++.
T Consensus 458 E~~~ 461 (476)
T 2gi3_A 458 EKNS 461 (476)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 9764
No 8
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=1.4e-86 Score=703.62 Aligned_cols=406 Identities=24% Similarity=0.287 Sum_probs=327.7
Q ss_pred cchhHHHHhhhhhhHHHHHH-----H----Hhh--hhc---CcccceeeccccCCCCCCC-------CCCCCCCCCCcee
Q 008244 5 SANLWVLLGLGLAGILLMTK-----K----LKK--NIK---QDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSF 63 (573)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~-----~----~~~--~~~---~~~na~~~~~~~~~~~~a~-------~~~~~gpL~Gvp~ 63 (573)
.-++..+++.+|+++++.++ + ++| +.| |.+|||++...+ |+++|+ +++..||||||||
T Consensus 5 ~~~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~~gpL~GvPi 83 (503)
T 1m22_A 5 PFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPL 83 (503)
T ss_dssp CCTTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEE
T ss_pred CCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCCCCCcCCcee
Confidence 34566678999999977665 2 243 668 999999999876 666542 3566799999999
Q ss_pred eeecccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhc-----ccCCCCCCCCCCCCCCCCCC
Q 008244 64 AVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAY-----SINGTNKHYDTPTNPAAPSQ 138 (573)
Q Consensus 64 ~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~-----~~~~~~~~~G~t~NP~~~~~ 138 (573)
+|||||+++|++||+||+.+.+. ++ +||++|+|||+||||++||||||||++ +.+|+|++||+|+||||++|
T Consensus 84 ~vKD~~~v~G~~Tt~Gs~~~~~~--~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~~ 160 (503)
T 1m22_A 84 LLKDNINAAPMATSAGSLALQGF--RP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISH 160 (503)
T ss_dssp EEETTBCCTTSCCCTTCGGGTTC--CC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTB
T ss_pred EeecccccCCCCcCCCCHhhcCC--CC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCCC
Confidence 99999999999999999999863 78 999999999999999999999999998 78999999999999999999
Q ss_pred CCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHHHHHHHHH
Q 008244 139 MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHV 218 (573)
Q Consensus 139 ~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d~~~v~~~ 218 (573)
+||||||||||+||+|++|+|+|||||||||+|||||||||||||+||||+.|++|+++++|++|||+|+++|+..++++
T Consensus 161 ~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~v 240 (503)
T 1m22_A 161 SPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTA 240 (503)
T ss_dssp CCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccc---------------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCcc
Q 008244 219 LLQLPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEY 275 (573)
Q Consensus 219 ~~~~~~~~---------------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~ 275 (573)
+.+.+..+ ..++.||++..+.+. .++++.++++++++.|. |++|++ +++
T Consensus 241 l~g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~~----~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--- 312 (503)
T 1m22_A 241 IAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLL----KYRGMPPLIEQAATELRRAGAVVVP-VEL--- 312 (503)
T ss_dssp HCCCCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGGG----GSTTHHHHHHHHHHHHHHTTCEEEE-ECC---
T ss_pred HcCCCCCCccccccccccccchhhhccccCCCCCEEEEECcccc----CCHHHHHHHHHHHHHHHHcCCEEEE-eCC---
Confidence 87643211 124567777665431 46788899999998886 777743 222
Q ss_pred ccccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhHHHHH---------------------hhCCCCCHHHHHHHHHhhcC
Q 008244 276 FDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIE---------------------SVKPALDPDISAEIGEMLEI 334 (573)
Q Consensus 276 v~~~~p~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~g~~~ 334 (573)
|.+.++.. ....+..+|+...+..|+. .....+++.++.++..+..+
T Consensus 313 -----p~~~~~~~-------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (503)
T 1m22_A 313 -----PNQGAWAE-------AERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGL 380 (503)
T ss_dssp -----TTTTTTHH-------HHHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCCCT
T ss_pred -----CcHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhhhcchhcccccCHHHHHHHHhcCCC
Confidence 21111100 1111112222222222221 12346788888999888889
Q ss_pred CHHHHHHHHHHHHHHHHH--HHhhcCC--CCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCcc
Q 008244 335 SETVIENCKSIRNEMRSA--ISSLLKD--DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410 (573)
Q Consensus 335 s~~~~~~a~~~r~~~~~~--~~~~~~~--~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~ 410 (573)
+..+|.++++.|..++++ +.++|++ +|+||+||+ .++|+++.... .+ ...||.++|++|+|+||||+|+
T Consensus 381 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~-~~a~~~~~~~~---~~---~~~~t~~~nl~G~PaisvP~g~ 453 (503)
T 1m22_A 381 ADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTT-GVAWPIRSEGD---DF---PGESYSAAAVAGYPSLTVPMGQ 453 (503)
T ss_dssp TCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECC-CCCCBTTC------CC---TTCCHHHHHHHTCCEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCC-ccCcccccccC---cc---cccccccchhhCCCeEEecccc
Confidence 999999999988888876 9999984 999999999 56777653211 11 1458999999999999999999
Q ss_pred CCCCCceeEEEeccCCcHHHHHHHHHHHHHH
Q 008244 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASL 441 (573)
Q Consensus 411 ~~glPvGlq~~~~~~~d~~ll~~a~~le~~l 441 (573)
++|||+|||++|++++|..||+++..+|+++
T Consensus 454 ~~GlPvGvqlvg~~~~d~~lL~~A~~~E~~~ 484 (503)
T 1m22_A 454 IDGLPVGLLFMGTAWSEPKLIEMAYAYEQRT 484 (503)
T ss_dssp ETTEEEEEEEECSTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCChHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999765
No 9
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=1.6e-84 Score=687.41 Aligned_cols=376 Identities=23% Similarity=0.299 Sum_probs=307.1
Q ss_pred CCCCCCCCCceeeeecccccCCcccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCC
Q 008244 52 PKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPT 131 (573)
Q Consensus 52 ~~~~gpL~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~ 131 (573)
+...||||||||+|||||+++|++||+||+.+.+. ++.+||++|+|||+||||++||||||||+++.+|+|++||+|+
T Consensus 82 g~~~gpL~GvPi~vKD~i~v~G~~Tt~Gs~~~~~~--~~~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~ 159 (521)
T 3a1k_A 82 PTSDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEGF--TPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVR 159 (521)
T ss_dssp CSSCCTTTTCEEEEETTBCCTTSCBCTTCTTTTTB--CCSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCE
T ss_pred CCCCCCCCCCEEEEEcCcccCCcccCCCChhhcCC--CCCCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcC
Confidence 45679999999999999999999999999999764 8899999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCChHHHHHHhhcCCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCCCCcccccccCHHH
Q 008244 132 NPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKI 211 (573)
Q Consensus 132 NP~~~~~~~GGSSgGsaaaVaag~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~~d~~G~~ar~~~d 211 (573)
||||++|+||||||||||+||+|++|+|+|||||||||+|||||||||||||+||||+.|++|+++++|++|||||+++|
T Consensus 160 NP~~~~~~pGGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D 239 (521)
T 3a1k_A 160 NPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHD 239 (521)
T ss_dssp ETTEEEEECCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHH
T ss_pred CCCCCCCCCCCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccc------------------CCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceecc
Q 008244 212 LRHVGHVLLQLPFAA------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHEN 271 (573)
Q Consensus 212 ~~~v~~~~~~~~~~~------------------~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~ 271 (573)
+..+++++.+.+..+ ..++.||++..+.+.. ...++++.++++++++.|. |++|++ ++
T Consensus 240 ~a~~l~vlag~d~~D~~~~~~~~~~~~~~~l~~~~~~lrIgv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~Ga~v~e-v~ 317 (521)
T 3a1k_A 240 AALMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVREGFGH-AVSQPEVDDAVRAAAHSLTEIGCTVEE-VN 317 (521)
T ss_dssp HHHHHHHHCSCCSSCTTSCTTCCCCCSSTTTTSCCTTCEEEEEGGGSCC-SSSCHHHHHHHHHHHHGGGGGTCEEEE-EC
T ss_pred HHHHHHHHhCCCCCCccccccCCCcchhhhhccCccCcEEEEECccccc-cCCCHHHHHHHHHHHHHHHHCCCEEEE-eC
Confidence 999999987654221 1234567775553321 2247899999999999886 666643 22
Q ss_pred CCccccccCCChhhhhhhhhhHH--HHHHHH-------------HHHHHHhhhHHHHHhhCCCCCHHHHHHHHHhh----
Q 008244 272 LGEYFDSKVPSLKGFHKTNGELK--NVMRLI-------------QRYEFKNNHNEWIESVKPALDPDISAEIGEML---- 332 (573)
Q Consensus 272 lg~~v~~~~p~~~~~~~~~~~l~--~~~~~~-------------~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~---- 332 (573)
.|.+.........+. .....+ ...+....+..|...+.+.+++.++.++..|.
T Consensus 318 --------~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~ 389 (521)
T 3a1k_A 318 --------IPWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRIQHADALSETVKLVALTGHHGIT 389 (521)
T ss_dssp --------CTHHHHHHHHHHHHHHHHHHHHTTTTTTTCSSSCSCCCHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHT
T ss_pred --------CCchHhHHHHHHHHHHHHHHhhhhhccccccchhhhhhHHHHHHHHHHhhhhhhhcCHHHHHHHHhchhhhc
Confidence 222211100000000 000000 00122223444555556778999999987763
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCChHHHHHh---hhhhhccccccCCceeeecCc
Q 008244 333 EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNR---AFSLLSIASVSGCCQVTVPLG 409 (573)
Q Consensus 333 ~~s~~~~~~a~~~r~~~~~~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~---~~~~t~~~nl~G~PaisvP~g 409 (573)
.++..+|.++++.|..+++.|+++|+++|+||+||+|.+||+++....+...+..+ +..||.+||++|+|+||||+|
T Consensus 390 ~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g 469 (521)
T 3a1k_A 390 TLGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAG 469 (521)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHCSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEeecc
Confidence 46778999999999999999999999999999999999999998754333333322 345899999999999999999
Q ss_pred cCCCCCceeEEEeccCCcHHHHHHHHHHHH
Q 008244 410 YYDKCPTSVSFIARHGGDRFLLDTVQNMYA 439 (573)
Q Consensus 410 ~~~glPvGlq~~~~~~~d~~ll~~a~~le~ 439 (573)
+.+|||+||||+|++++|..||+++.++|+
T Consensus 470 ~~~GlPvGlQlvg~~~~d~~LL~~A~~~E~ 499 (521)
T 3a1k_A 470 LVNGLPVGMMITGRHFDDATVLRVGRAFEK 499 (521)
T ss_dssp EETTEEEEEEEECSTTCHHHHHHHHHHHHH
T ss_pred cCCCCCeeEEEEcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999997
No 10
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=6.5e-83 Score=676.54 Aligned_cols=419 Identities=20% Similarity=0.215 Sum_probs=323.1
Q ss_pred chhHHHHhhhhhhHHHHHHH---------Hhh--hhcCcccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCc
Q 008244 6 ANLWVLLGLGLAGILLMTKK---------LKK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGY 74 (573)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~---------~~~--~~~~~~na~~~~~~~~~~~~a~~~~~~gpL~Gvp~~vKD~~~~~g~ 74 (573)
.+++.+|+.+|+++++.++. ++| +.|+.+|||++...+. .+++++....||||||||+|||+|+++|+
T Consensus 66 ~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~a-~~~a~~~~~~gpL~GvPi~vKD~~~~~G~ 144 (573)
T 3ppm_A 66 EALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDC-ETQLSQAPRQGLLYGVPVSLKECFSYKGH 144 (573)
T ss_dssp HHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTH-HHHHHHCCTTCTTTTCEEEEETTBCCBTC
T ss_pred hhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHHH-HHHHHhhhhcCCcCCCeEEEEcccCCCCC
Confidence 56778899999999776652 234 7799999999987552 23332223459999999999999999999
Q ss_pred ccCCCchhhhhcCCCCCCChHHHHHHHhCCCeEEeecchhhhhcccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHhhc
Q 008244 75 VTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAAD 154 (573)
Q Consensus 75 ~tt~Gs~~~~~~~~~~~~da~~v~~L~~aGai~~gkt~~~e~~~~~~~~~~~~G~t~NP~~~~~~~GGSSgGsaaaVaag 154 (573)
+||+||..+.+ .++.+||++|++|++||||++||||||||+++.+|.|++||+|+||||++++||||||||||+||+|
T Consensus 145 ~tt~Gs~~~~~--~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag 222 (573)
T 3ppm_A 145 DSTLGLSLNEG--MPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSG 222 (573)
T ss_dssp CCCTTCGGGTT--CCBSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTBCCCSSSHHHHHHHHTT
T ss_pred CcCCcChhhcC--CCCCcchHHHHHHHHCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCCCCCCCCchHHHHHHcC
Confidence 99999999876 4899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCcccccccccCcccccCCCCccccCCCCCCCCC----CCcccccccCHHHHHHHHHHhcCCC-------
Q 008244 155 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS----LDTVGWFARDPKILRHVGHVLLQLP------- 223 (573)
Q Consensus 155 ~~~~a~GtD~gGSiRiPAa~cGv~GlkPT~G~v~~~G~~p~~~~----~d~~G~~ar~~~d~~~v~~~~~~~~------- 223 (573)
++|+|+|||||||||+||+||||||||||+||||+.|++|.+++ +|++|||+|+++|+..+++++.+.+
T Consensus 223 ~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~~l~~~d~~~~d~~ 302 (573)
T 3ppm_A 223 GSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPT 302 (573)
T ss_dssp SCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHHHHSSHHHHHHCTT
T ss_pred CCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHHHHHHHhcccccccCCC
Confidence 99999999999999999999999999999999999999998765 8999999999999999998875422
Q ss_pred -----cc----cCCCCceEEEcccchhhcCCChHHHHHHHHHHHHHHc--CCccceeccCCccccccCCChhhhhhhh--
Q 008244 224 -----FA----AQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTN-- 290 (573)
Q Consensus 224 -----~~----~~~~~~rl~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~lg~~v~~~~p~~~~~~~~~-- 290 (573)
+. ...++.||++..+.. ...+++++.++++++++.|. |++|++ .+ .|.+.+.....
T Consensus 303 ~~~~~~~~~~~~~~~~lrigv~~~~~--~~~~~p~v~~a~~~a~~~L~~~G~~v~~-~~--------~p~~~~~~~~~~~ 371 (573)
T 3ppm_A 303 VPPLPFREEVYRSSRPLRVGYYETDN--YTMPSPAMRRALIETKQRLEAAGHTLIP-FL--------PNNIPYALEVLST 371 (573)
T ss_dssp SCCCCCCHHHHTCCCCCEEEECSCCS--SSCCCHHHHHHHHHHHHHHHHTTCEEEE-CC--------CTTHHHHHHTHHH
T ss_pred CCccccchhhcccCCCCEEEEEcccC--CCCCCHHHHHHHHHHHHHHHHCCCEEEE-ec--------CccHHHHHHHHHH
Confidence 11 123456777754432 23358899999999999986 777753 22 22222111000
Q ss_pred ----hh-HHHHHHHHHH---------HH-H---HhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 008244 291 ----GE-LKNVMRLIQR---------YE-F---KNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSA 352 (573)
Q Consensus 291 ----~~-l~~~~~~~~~---------~e-~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~ 352 (573)
.+ .......+.. .. . ...+...+......+.|.+...+..+...+..++++.+..|..++++
T Consensus 372 ~~~~~dg~~~~~~~~~~e~~~p~~~~~~~~~~lp~~l~~~~~~~~~~~~p~~~~~~~~~~~~s~~e~~~~~~~r~~~r~~ 451 (573)
T 3ppm_A 372 GGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQS 451 (573)
T ss_dssp HHHTTBTTHHHHGGGTTSCCCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHHHHTSBCBHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHhccCcccHHHHHHhhhccchHHHHHHHHHHhhhcchHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence 00 0000000000 00 0 00000001111123445555556667778899999999999999999
Q ss_pred HHhhcC--CCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccC-------------------
Q 008244 353 ISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY------------------- 411 (573)
Q Consensus 353 ~~~~~~--~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~------------------- 411 (573)
|.+.|+ ++|+||||+ +.++++++... . ....+.||.+||++|+|+++||+|+.
T Consensus 452 ~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~----~-~~~~~~YT~l~NLLDyPA~vVPvg~v~~~~d~~~~~~~~~~~~~~ 525 (573)
T 3ppm_A 452 VIAQWKAMNLDVLLTPM-LGPALDLNTPG----R-ATGAVSYTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIW 525 (573)
T ss_dssp HHHHHHHTTCSEEEEEC-CCSCCBTTCGG----G-CGGGGHHHHHHHHTTCCEEEEEEEECCHHHHHHHTTCCCSSCSHH
T ss_pred HHHHHhhcCCCEeeCCC-CCCCcCCcccc----c-cccccchhhhhHhhCCCeEEEecccccccccccccccccccchhh
Confidence 999995 599999999 45888887521 1 11345699999999999999999853
Q ss_pred -----------CCCCceeEEEeccCCcHHHHHHHHHHHHHHHHH
Q 008244 412 -----------DKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQ 444 (573)
Q Consensus 412 -----------~glPvGlq~~~~~~~d~~ll~~a~~le~~l~~~ 444 (573)
+|+|||||++|++++|+.+|+++..+|++++..
T Consensus 526 d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~~~ 569 (573)
T 3ppm_A 526 DIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQ 569 (573)
T ss_dssp HHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCTT
T ss_pred hhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcc
Confidence 699999999999999999999999999877553
No 11
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.71 E-value=8e-17 Score=138.07 Aligned_cols=109 Identities=28% Similarity=0.367 Sum_probs=103.9
Q ss_pred ccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHH
Q 008244 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICA 536 (573)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~ 536 (573)
.-+|+.++.++++|+.++++|+|++|++.|+++|+++|+++.+|+++|.||.++|++++|+.+|+++++++|++ .+++.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999998 58999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244 537 EAQQERCLDITRRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 537 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 566 (573)
+|.++..++.+++|++.|+++.+++|...+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHH
Confidence 999999999999999999999999997543
No 12
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.61 E-value=2.5e-15 Score=128.90 Aligned_cols=103 Identities=28% Similarity=0.413 Sum_probs=96.1
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--------
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-------- 531 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-------- 531 (573)
.++.+..++++|+.++++|+|++|+++|+++|+++|+++.+|+|+|.||+++|+|++|+.+|+++++++|++
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244 532 RLICAEAQQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
.+++.+|.++..++.+++|++.|++++...|
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 3778889999999999999999999988766
No 13
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.59 E-value=3.8e-15 Score=130.53 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NAT-----YYSNRAAAYLESGSFLQAEADCTKAINL-- 527 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~-------~~~-----~~~n~a~~~~~l~~~~~Al~~~~~al~l-- 527 (573)
..+..++++|+.+++.|+|++|+.+|+++|+++|+ +.. +|+|+|.|+.++|+|++|+.+|++||++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 46888999999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred -----CcCc-HHH----HHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 528 -----DKKV-RLI----CAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 528 -----~p~~-~~~----~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
+|++ +++ +++|.++..++++++|++.|+++..++|.
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9998 477 99999999999999999999999999884
No 14
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.57 E-value=2.5e-14 Score=126.40 Aligned_cols=111 Identities=17% Similarity=0.077 Sum_probs=104.4
Q ss_pred CCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Q 008244 453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV- 531 (573)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~- 531 (573)
+......+|+.+..++++|..+++.|+|++|+..|+++++++|+++.+|+++|.||..+|+|++|+..|+++++++|++
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 3444556789999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 532 RLICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
..++.++.++..++++++|++.|+++..+.|.
T Consensus 105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 105 TPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 59999999999999999999999999998874
No 15
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.7e-13 Score=116.76 Aligned_cols=101 Identities=32% Similarity=0.389 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~ 539 (573)
|..++.++++|..+++.|+|++|+..|+++|+++|+++.+|+++|.||+++|+|++|+.+|+++++++|++ ..++.++.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999998 48899999
Q ss_pred HHHHHHHHHHHHHHHhhccccC
Q 008244 540 QERCLDITRRQLKIFHMHWSWS 561 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~~~ 561 (573)
++..++.+++|++.|+++..++
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988
No 16
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.48 E-value=3.1e-13 Score=120.98 Aligned_cols=110 Identities=25% Similarity=0.267 Sum_probs=103.5
Q ss_pred CccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHH
Q 008244 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLIC 535 (573)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~ 535 (573)
...++..+..++.+|..+++.|+|++|++.|+++|+++|+++.+|+++|.||+++|+|++|+.+|+++++++|++ ..++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (164)
T 3sz7_A 4 SMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83 (164)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 445678899999999999999999999999999999999999999999999999999999999999999999998 5889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244 536 AEAQQERCLDITRRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 536 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 566 (573)
.++.++..++.+++|++.|+++..++|...+
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 9999999999999999999999999987554
No 17
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.48 E-value=1.5e-13 Score=121.42 Aligned_cols=107 Identities=13% Similarity=0.051 Sum_probs=98.6
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAE 537 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~ 537 (573)
.+|+.+..++.+|..|++.|+|++|++.|+++|+++|+++.+|+++|.||.++|++++|+.+|+++++++|++. +++.+
T Consensus 26 ~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 105 (150)
T 4ga2_A 26 SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKI 105 (150)
T ss_dssp SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999985 88889
Q ss_pred HHHHHHHHHHHHHHHHH-hhccccCCCCC
Q 008244 538 AQQERCLDITRRQLKIF-HMHWSWSPPIK 565 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~~-~~~~~~~~~~~ 565 (573)
+.++..++.+.++.+.| +++.+++|..+
T Consensus 106 a~~~~~~~~~~~aa~~~~~~al~l~P~~~ 134 (150)
T 4ga2_A 106 AELLCKNDVTDGRAKYWVERAAKLFPGSP 134 (150)
T ss_dssp HHHHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence 99999999988888765 89999999654
No 18
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.48 E-value=1.3e-13 Score=123.30 Aligned_cols=106 Identities=19% Similarity=0.310 Sum_probs=99.2
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------------------NGNNATYYSNRAAAYLESGSFLQAEADC 521 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~------------------~p~~~~~~~n~a~~~~~l~~~~~Al~~~ 521 (573)
..+.+..++++|+.+++.|+|++|+..|+++|++ +|.+..+|+|+|.||+++|+|++|+.+|
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3467899999999999999999999999999999 7778899999999999999999999999
Q ss_pred HHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244 522 TKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 522 ~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
+++++++|++ .+++.+|.++..++.+++|++.|+++..++|...
T Consensus 87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 87 SEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 9999999998 5999999999999999999999999999998644
No 19
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.46 E-value=5.1e-13 Score=117.65 Aligned_cols=109 Identities=10% Similarity=0.023 Sum_probs=102.2
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAE 537 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~ 537 (573)
.+|+....+.++|..+++.|+|++|+..|+++++++|+++.+|+++|.||..+|+|++|+..|+++++++|++ ..++.+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999999999998 588999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 008244 538 AQQERCLDITRRQLKIFHMHWSWSPPIKEH 567 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 567 (573)
+.++..++.+++|++.|+++..++|..++.
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 999999999999999999999988865443
No 20
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.43 E-value=9.8e-13 Score=114.77 Aligned_cols=111 Identities=15% Similarity=0.091 Sum_probs=103.1
Q ss_pred CCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHH
Q 008244 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLI 534 (573)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~ 534 (573)
....+|+....++.+|..+++.|+|++|+..|+++++.+|+++.+|+++|.||..+|+|++|+..|+++++++|++ ..+
T Consensus 10 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 3445678899999999999999999999999999999999999999999999999999999999999999999998 588
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244 535 CAEAQQERCLDITRRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 535 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 566 (573)
+.++.++..++.+++|++.|+++..++|...+
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 89999999999999999999999998885444
No 21
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.43 E-value=2e-12 Score=109.50 Aligned_cols=102 Identities=15% Similarity=-0.003 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQER 542 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~ 542 (573)
...++++|..+++.|++++|+..|+++++.+|+++.+|+++|.++..+|++++|+..|+++++++|++. .++.++.++.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999999999999999999999999999999984 8889999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCC
Q 008244 543 CLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 543 ~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
.++.+++|++.|++...++|...
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999999998654
No 22
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=4.8e-12 Score=139.80 Aligned_cols=139 Identities=14% Similarity=0.046 Sum_probs=110.0
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 008244 424 HGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN 503 (573)
Q Consensus 424 ~~~d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n 503 (573)
+.+-..+.+++..+.+..+-.......+. -...+|+.+..+.++|+.+.++|++++|++.|+++|+++|+++.+|+|
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~k---Al~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRK---ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHH---HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 33445667777776654333322222222 223456678889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244 504 RAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 504 ~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
+|.+|.++|++++|++.|++|++++|++ .+++.+|.++..++++++|++.|+++.+++|...
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~ 145 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFP 145 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999999999998 4888889999999999999999999999988643
No 23
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=7.3e-12 Score=138.31 Aligned_cols=100 Identities=22% Similarity=0.121 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~ 540 (573)
+.+..+.++|+.+.+.|++++|+++|+++|+++|+++.+|+|+|.+|.++|++++|+++|++|++++|++. +++.++.+
T Consensus 75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154 (723)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhH
Confidence 33444555555555555555555555555555555555555555555555555555555555555555542 44444444
Q ss_pred HHHHHHHHHHHHHHhhccccC
Q 008244 541 ERCLDITRRQLKIFHMHWSWS 561 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~~~~~ 561 (573)
+..++++++|.+.|++..++.
T Consensus 155 l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 155 LQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp HHHTTCCTTHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHhC
Confidence 444455555555554444433
No 24
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.31 E-value=7.4e-12 Score=107.79 Aligned_cols=104 Identities=28% Similarity=0.365 Sum_probs=97.7
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA 538 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~ 538 (573)
++..+..+..+|..+++.|+|++|+..|+++++++|+++.+|+++|.||+.+|++++|+.+|+++++++|++ ..++.++
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 345688999999999999999999999999999999999999999999999999999999999999999998 4888999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCC
Q 008244 539 QQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 539 ~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
.++..++.+++|++.|.++..++|.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 9999999999999999999988775
No 25
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.29 E-value=1.4e-11 Score=129.52 Aligned_cols=106 Identities=21% Similarity=0.286 Sum_probs=93.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTKA 524 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---------------~~~~~n~a~~~~~l~~~~~Al~~~~~a 524 (573)
+++.+..++++|+.++++|+|++|+.+|+++|+++|++ ..+|+|+|.||+++++|++|+.+|++|
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 35678889999999999999999999999999999988 799999999999999999999999999
Q ss_pred HHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244 525 INLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 525 l~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
++++|++ .+++.++.++..++.+++|++.|+++.+++|...
T Consensus 344 l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 9999988 5889999999999999999999999999988654
No 26
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.27 E-value=5.4e-11 Score=101.42 Aligned_cols=93 Identities=12% Similarity=0.146 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 008244 437 MYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ 516 (573)
Q Consensus 437 le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~ 516 (573)
+++++....+..... |..+..+.++|..+++.|++++|++.|+++|+++|++..+|+++|.||..+|++++
T Consensus 29 ~~~A~~~~~~al~~~---------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 99 (126)
T 4gco_A 29 YPTAMRHYNEAVKRD---------PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSK 99 (126)
T ss_dssp HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhC---------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHH
Confidence 444555444444433 46789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCcCcH-HHHHHH
Q 008244 517 AEADCTKAINLDKKVR-LICAEA 538 (573)
Q Consensus 517 Al~~~~~al~l~p~~~-~~~~~~ 538 (573)
|+++|+++++++|++. +...++
T Consensus 100 A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 100 AQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCHHHHHHHH
Confidence 9999999999999995 443333
No 27
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.27 E-value=1.7e-11 Score=123.51 Aligned_cols=104 Identities=18% Similarity=0.220 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTKAI 525 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---------------~~~~~n~a~~~~~l~~~~~Al~~~~~al 525 (573)
+..+..++++|+.+++.|+|++|+.+|+++|+++|++ ..+|+|+|.||+++|+|++|+.+|++++
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567777778888888888888888888888887777 5777888888888888888888888888
Q ss_pred HhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 526 NLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 526 ~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
+++|++ .+++.++.++..++.+++|++.|+++..++|..
T Consensus 224 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 224 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 888776 477777777777778888888888777777754
No 28
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.25 E-value=2.7e-11 Score=103.19 Aligned_cols=110 Identities=25% Similarity=0.394 Sum_probs=102.2
Q ss_pred CCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HH
Q 008244 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RL 533 (573)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~ 533 (573)
......+.....++.+|..+++.|+|++|+..|+++++.+|++..+|+++|.+|..++++++|+..++++++++|++ ..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 86 (133)
T 2lni_A 7 HHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG 86 (133)
T ss_dssp TTCCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHH
Confidence 34456678899999999999999999999999999999999999999999999999999999999999999999998 58
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 534 ICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 534 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
++.++.++..++.+++|.+.|++...++|..
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence 8889999999999999999999999988854
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.25 E-value=3.2e-11 Score=113.37 Aligned_cols=105 Identities=13% Similarity=0.081 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~ 539 (573)
|..+..+..+|..+++.|++++|+..|+++|+++|+++.+|+++|.++.++|++++|+..|+++++++|++. .++.++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 345678899999999999999999999999999999999999999999999999999999999999999984 8888999
Q ss_pred HHHHH-----------HHHHHHHHHHhhccccCCCCC
Q 008244 540 QERCL-----------DITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 540 ~~~~~-----------~~~~~al~~~~~~~~~~~~~~ 565 (573)
++..+ +.+++|++.|+++.+++|...
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 118 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA 118 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH
Confidence 99999 999999999999999998643
No 30
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.25 E-value=9.3e-12 Score=102.77 Aligned_cols=93 Identities=22% Similarity=0.308 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------H-HHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV------R-LIC 535 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~------~-~~~ 535 (573)
.+..+.++|..+++.|+|++|++.|+++++++|+++.+|+++|.||.++|++++|+.+|+++++++|++ . .++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 477899999999999999999999999999999999999999999999999999999999999999996 2 555
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 008244 536 AEAQQERCLDITRRQLKIFH 555 (573)
Q Consensus 536 ~~~~~~~~~~~~~~al~~~~ 555 (573)
.++.++..++.++++++.|+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 56666665555444444443
No 31
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.24 E-value=1.9e-10 Score=107.19 Aligned_cols=94 Identities=15% Similarity=0.039 Sum_probs=82.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH--------
Q 008244 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ-------- 540 (573)
Q Consensus 470 ~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~-------- 540 (573)
+|..+++.|+|++|+..|+++|+++|++..+|+++|.+|..+|++++|+..|+++++++|++. +++.++.+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999973 33333322
Q ss_pred ---------------------------HHHHHHHHHHHHHHhhccccCCC
Q 008244 541 ---------------------------ERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 541 ---------------------------~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
...++.+++|...|+++.+++|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 140 KKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 22235678999999999999885
No 32
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.24 E-value=1.4e-11 Score=126.17 Aligned_cols=104 Identities=9% Similarity=-0.070 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQ-WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA 538 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~-~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~ 538 (573)
|+....|.++|..+.+.|+ |++|+..|+++|+++|++..+|++||.+|..+|++++|+.+|+++|+++|++ .+++.++
T Consensus 128 P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg 207 (382)
T 2h6f_A 128 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207 (382)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHH
Confidence 4778899999999999996 9999999999999999999999999999999999999999999999999998 4888889
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 539 QQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 539 ~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
.++..++.+++|++.|+++..++|..
T Consensus 208 ~~~~~~g~~~eAl~~~~~al~l~P~~ 233 (382)
T 2h6f_A 208 WVIQEFKLWDNELQYVDQLLKEDVRN 233 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred HHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999988854
No 33
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.23 E-value=5.3e-11 Score=109.92 Aligned_cols=105 Identities=21% Similarity=0.217 Sum_probs=91.5
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----------------TYYSNRAAAYLESGSFLQAEADCTK 523 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~----------------~~~~n~a~~~~~l~~~~~Al~~~~~ 523 (573)
.++.+..+.++|+.+++.|+|++|+..|++++++.|+++ .+|+++|.||+++|+|++|+.+|++
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 113 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK 113 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 345677888999999999999999999999999888876 8899999999999999999999999
Q ss_pred HHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 524 AINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 524 al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
+++++|++ .+++.++.++..++.+++|++.|+++..++|..
T Consensus 114 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 114 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 99999987 488888888888899999999999988888754
No 34
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.8e-11 Score=103.75 Aligned_cols=108 Identities=25% Similarity=0.269 Sum_probs=100.0
Q ss_pred ccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HH
Q 008244 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RL 533 (573)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~ 533 (573)
..++..+..++.+|..+++.|+|++|++.|+++++++|++ ..+|+++|.+|..++++++|+..|+++++++|++ ..
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 3446678999999999999999999999999999999998 8999999999999999999999999999999988 48
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244 534 ICAEAQQERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 534 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
++.++.++..++.+++|.+.|++...++|...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 88899999999999999999999999988643
No 35
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.22 E-value=1.2e-10 Score=96.55 Aligned_cols=103 Identities=27% Similarity=0.333 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQE 541 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~ 541 (573)
.+..++.+|..++..|+|++|+..|+++++.+|++..++.++|.+|..+|++++|+..++++++++|++ ..++.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999999999997 4788889999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCC
Q 008244 542 RCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 542 ~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
..++.+++|.+.|+....++|...
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCH
Confidence 999999999999999999988543
No 36
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.21 E-value=2.6e-11 Score=99.69 Aligned_cols=104 Identities=15% Similarity=0.123 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--c-HHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--V-RLICAE 537 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~--~-~~~~~~ 537 (573)
|..+..+..+|..+++.|+|++|+..|+++++++|++..+|+++|.+|..+|++++|+..++++++++|+ + ..++.+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 3446678889999999999999999999999999999999999999999999999999999999999999 6 588889
Q ss_pred HHHHHHH-HHHHHHHHHHhhccccCCCC
Q 008244 538 AQQERCL-DITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 538 ~~~~~~~-~~~~~al~~~~~~~~~~~~~ 564 (573)
+.++..+ +.+++|++.|+......|..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 9999999 99999999999999988864
No 37
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.21 E-value=3.6e-11 Score=112.14 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN----------------RAAAYLESGSFLQAEADCTKAIN 526 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n----------------~a~~~~~l~~~~~Al~~~~~al~ 526 (573)
.+..+..+|..+++.|+|++|+..|+++++++|+++.+|++ +|.+|.++|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 36778999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244 527 LDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 527 l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
++|++ .+++.++.++..++.+++|++.|+++..++|...
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 122 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 99998 4889999999999999999999999999999654
No 38
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.21 E-value=2.7e-11 Score=118.79 Aligned_cols=103 Identities=28% Similarity=0.358 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~ 540 (573)
..+..++++|+.+++.|+|++|+..|+++|+.+|+++.+|+++|.||.++|++++|+.+|+++++++|++ .+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3478899999999999999999999999999999999999999999999999999999999999999998 588999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCC
Q 008244 541 ERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
+..++.+++|++.|.++..++|..
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999999988743
No 39
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.20 E-value=1.8e-10 Score=97.36 Aligned_cols=108 Identities=29% Similarity=0.418 Sum_probs=99.9
Q ss_pred CccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHH
Q 008244 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLIC 535 (573)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~ 535 (573)
...++..+..+..+|..++..|+|++|+..|+++++.+|++..+|.++|.+|..++++++|+..++++++++|++ ..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 84 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence 345677899999999999999999999999999999999999999999999999999999999999999999998 4888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 536 AEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 536 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
.++.++...+.+++|.+.|+.+..++|..
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence 88999999999999999999999988854
No 40
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.20 E-value=8.5e-11 Score=102.92 Aligned_cols=97 Identities=11% Similarity=0.002 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhhhhcCCCCC---CccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------cCCCHHHH---
Q 008244 435 QNMYASLQEQADIATKSKLSTN---TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYY--- 501 (573)
Q Consensus 435 ~~le~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~-------~p~~~~~~--- 501 (573)
..+++++......+...+-... ....+..+..|.++|.++.+.|+|++|+.+|+++|++ +|+++.+|
T Consensus 25 g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~ 104 (159)
T 2hr2_A 25 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISA 104 (159)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHH
Confidence 3456666666665555543111 1223345669999999999999999999999999999 99999999
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 502 -SNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 502 -~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
+|+|.++..+|++++|+.+|++|++++|++
T Consensus 105 ~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 105 VYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999997
No 41
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.19 E-value=9.8e-11 Score=102.29 Aligned_cols=92 Identities=14% Similarity=0.079 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhcCCCHHHHHH
Q 008244 434 VQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQW----------LKAISFYTEAIKLNGNNATYYSN 503 (573)
Q Consensus 434 a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~Ai~~y~~ai~~~p~~~~~~~n 503 (573)
...+++++..........+ +.++.|.+.|.++.+.+++ ++||.+|++||+++|++..+|+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P---------~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~ 85 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNP---------LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCC---------CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 3456666666666666555 7899999999999998876 59999999999999999999999
Q ss_pred HHHHHHHcC-----------CHHHHHHHHHHHHHhCcCcHHH
Q 008244 504 RAAAYLESG-----------SFLQAEADCTKAINLDKKVRLI 534 (573)
Q Consensus 504 ~a~~~~~l~-----------~~~~Al~~~~~al~l~p~~~~~ 534 (573)
+|.+|..+| +|++|+++|++|++++|++..+
T Consensus 86 LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 86 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 999999985 8999999999999999998533
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.19 E-value=9.9e-11 Score=109.96 Aligned_cols=101 Identities=17% Similarity=0.077 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244 462 QSAEIAKEKGNQAYKD-----------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~-----------~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~ 530 (573)
+.+..+.++|..+.+. |++++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++ +
T Consensus 71 ~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~ 149 (217)
T 2pl2_A 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D 149 (217)
T ss_dssp TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c
Confidence 4455555566666655 666666666666666666666666666666666666666666666666665 4
Q ss_pred c-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 531 V-RLICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 531 ~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
+ ..++.++.++..++++++|++.|+++..++|.
T Consensus 150 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 183 (217)
T 2pl2_A 150 TPEIRSALAELYLSMGRLDEALAQYAKALEQAPK 183 (217)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4 35555566666666666666666666666654
No 43
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.19 E-value=2e-10 Score=101.20 Aligned_cols=72 Identities=15% Similarity=0.078 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
|..+..|.++|.++++.|+|++|+.+|+++++++|+++.+|+++|.||.++|++++|+..|+++++++|+..
T Consensus 67 P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 67 FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 477899999999999999999999999999999999999999999999999999999999999999999875
No 44
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.17 E-value=2.2e-10 Score=101.57 Aligned_cols=99 Identities=17% Similarity=0.100 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HH--HHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LI--CAE 537 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~--~~~ 537 (573)
|.....+..+|..+++.|+|++|++.|+++++++|++..+|+++|.+|..+|++++|+..++++++++|++. .. +.+
T Consensus 44 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 123 (166)
T 1a17_A 44 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123 (166)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 334555666666666666666666666666666666666666666666666666666666666666666553 22 333
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 008244 538 AQQERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~~~~~~~ 559 (573)
+..+...+.+++|++.+.....
T Consensus 124 ~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 124 CNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccchHH
Confidence 3334445666666666655443
No 45
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.17 E-value=6.2e-11 Score=103.54 Aligned_cols=90 Identities=13% Similarity=0.048 Sum_probs=82.6
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcCc-HHHHHHHHHHHH
Q 008244 475 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF----------LQAEADCTKAINLDKKV-RLICAEAQQERC 543 (573)
Q Consensus 475 ~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~----------~~Al~~~~~al~l~p~~-~~~~~~~~~~~~ 543 (573)
-+.++|++|++.|+++++++|+++.+|+|+|.++..++++ ++|+..|++||+++|++ .+++.++.++..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999875 59999999999999998 589999988887
Q ss_pred HH-----------HHHHHHHHHhhccccCCCC
Q 008244 544 LD-----------ITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 544 ~~-----------~~~~al~~~~~~~~~~~~~ 564 (573)
++ .+++|++.|++++.++|..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 74 8999999999999999964
No 46
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.16 E-value=3.4e-11 Score=121.37 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=92.0
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-----------------TYYSNRAAAYLESGSFLQAEADCT 522 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~-----------------~~~~n~a~~~~~l~~~~~Al~~~~ 522 (573)
.++.+..++++|+.+++.|+|++|+.+|+++|++.|++. .+|+|+|.||+++++|++|+.+|+
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 356688899999999999999999999999999999877 489999999999999999999999
Q ss_pred HHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 008244 523 KAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKEH 567 (573)
Q Consensus 523 ~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 567 (573)
++++++|++ .++++++.++..++.+++|++.|+++..++|...+.
T Consensus 255 ~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a 300 (338)
T 2if4_A 255 IVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI 300 (338)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH
Confidence 999999988 588999999999999999999999999998865443
No 47
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.16 E-value=2.9e-10 Score=103.19 Aligned_cols=104 Identities=18% Similarity=0.082 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~ 540 (573)
+....+...|..+...+++++|++.+.++++++|++..++.++|.+|.++|++++|++.|+++++++|++. .++.+|.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~ 150 (184)
T 3vtx_A 71 TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLA 150 (184)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999984 88899999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCC
Q 008244 541 ERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
+..++.+++|++.|+++.+++|...
T Consensus 151 ~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 151 YEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhCCccCH
Confidence 9999999999999999999998543
No 48
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.16 E-value=6.4e-11 Score=120.82 Aligned_cols=101 Identities=23% Similarity=0.285 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK----------------LNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~----------------~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~ 526 (573)
.+..++++|+.++++|+|++|+++|+++|+ .+|.+..+|+|+|.||+++++|++|+.+|+++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 355566666666666777777777776666 5556666666777777777777777777777776
Q ss_pred hCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 527 LDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 527 l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
++|++ .+++.++.++..++.+++|++.|+++.+++|.
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~ 339 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 66665 36666666666666666666666666666664
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.16 E-value=9.3e-11 Score=119.97 Aligned_cols=107 Identities=13% Similarity=0.036 Sum_probs=101.5
Q ss_pred ccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcH-HHH
Q 008244 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKVR-LIC 535 (573)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~-~~~Al~~~~~al~l~p~~~-~~~ 535 (573)
.-+|+.+..+..+|..+.+.|+|++|++.|+++|+++|++..+|++||.+|..+|+ +++|+.+|+++++++|++. +++
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~ 170 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 170 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 34678899999999999999999999999999999999999999999999999997 9999999999999999984 899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 536 AEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 536 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
.++.++..++.+++|+..|++++.++|..
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~~ 199 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAKN 199 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence 99999999999999999999999999964
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.15 E-value=2.2e-10 Score=104.04 Aligned_cols=103 Identities=14% Similarity=0.044 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~ 540 (573)
+.+..+..+|..+.+.|++++|+..+.++++.+|++..++.++|.++...+++++|+..++++++++|++. .+..++.+
T Consensus 37 ~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~ 116 (184)
T 3vtx_A 37 NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLV 116 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444442 44555666
Q ss_pred HHHHHHHHHHHHHHhhccccCCCC
Q 008244 541 ERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
+..++.+++|++.|+++.+++|..
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~p~~ 140 (184)
T 3vtx_A 117 YDSMGEHDKAIEAYEKTISIKPGF 140 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhCCchhHHHHHHHHHHhcchh
Confidence 666677777777777777776643
No 51
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.13 E-value=2.7e-10 Score=96.32 Aligned_cols=102 Identities=25% Similarity=0.386 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--------HH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV--------RL 533 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~--------~~ 533 (573)
+.+..+..+|..+++.|+|++|+..|+++++.+|++..+++++|.+|..+|++++|+..|+++++++|++ ..
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999999998864 37
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 534 ICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 534 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
++.++.++..++.+++|.+.|+....+.|.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 788899999999999999999999988773
No 52
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.13 E-value=2.3e-10 Score=107.95 Aligned_cols=103 Identities=16% Similarity=0.141 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG-NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQ 540 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p-~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~ 540 (573)
.+..++++|..+++.|+|++|+..|+++++++| .+..+++++|.||..+|++++|+.+|+++++++|++ ..++.++.+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 358899999999999999999999999999999 999999999999999999999999999999999998 488889999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCC
Q 008244 541 ERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
+..++.+++|++.|+++.+++|...
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~ 110 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNA 110 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcH
Confidence 9999999999999999999998643
No 53
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.12 E-value=2.7e-10 Score=96.67 Aligned_cols=100 Identities=12% Similarity=0.043 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---H-HHHHH
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---R-LICAE 537 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~---~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---~-~~~~~ 537 (573)
+.++++|..+++.|+|++|+..|+++++.+|++. .+++++|.+|+++|+|++|+..|+++++++|++ . .++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3467889999999999999999999999999887 799999999999999999999999999999987 3 67888
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 538 AQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
+.++..++.+++|.+.|+......|..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999988887753
No 54
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.11 E-value=3.8e-10 Score=91.16 Aligned_cols=92 Identities=13% Similarity=0.104 Sum_probs=80.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHH
Q 008244 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT-YYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLD 545 (573)
Q Consensus 467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~-~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~~~ 545 (573)
..++|..+++.|+|++|++.|+++++.+|++.. +|+++|.||..+|++++|+..|+++++++|++...+.. +
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------~ 75 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------K 75 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------H
Confidence 367899999999999999999999999999999 99999999999999999999999999999998533211 6
Q ss_pred HHHHHHHHHhhccccCCCCC
Q 008244 546 ITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 546 ~~~~al~~~~~~~~~~~~~~ 565 (573)
.+.+++..|++....+|...
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 77788888888887777543
No 55
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.10 E-value=8.1e-10 Score=104.10 Aligned_cols=105 Identities=18% Similarity=0.143 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--c
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-------TYYSNRAAAYLESGSFLQAEADCTKAINLDKK--V 531 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~-------~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~--~ 531 (573)
|.....+..+|..+++.|+|++|++.|+++++++|++. .+|.++|.++..+|++++|+..|+++++++|+ +
T Consensus 73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 152 (228)
T 4i17_A 73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWK 152 (228)
T ss_dssp CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHH
T ss_pred cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCccc
Confidence 46788999999999999999999999999999999998 67999999999999999999999999999999 6
Q ss_pred -HHHHHHHHHHHHHHHH---------------------------HHHHHHHhhccccCCCCC
Q 008244 532 -RLICAEAQQERCLDIT---------------------------RRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 532 -~~~~~~~~~~~~~~~~---------------------------~~al~~~~~~~~~~~~~~ 565 (573)
..++.++.++..++.. ++|+..|+++.+++|...
T Consensus 153 ~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~ 214 (228)
T 4i17_A 153 TDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH
Confidence 3666666666665555 899999999999998654
No 56
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.10 E-value=2.6e-10 Score=92.78 Aligned_cols=72 Identities=10% Similarity=0.123 Sum_probs=67.6
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
+|+.+..++.+|..+++.|+|++|+..|+++++++|+++.+|+++|.||.++|++++|+..|++++++.|+.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 567788999999999999999999999999999999999999999999999999999999999999998765
No 57
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.07 E-value=2.7e-11 Score=106.71 Aligned_cols=98 Identities=11% Similarity=0.008 Sum_probs=88.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHH
Q 008244 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDIT 547 (573)
Q Consensus 469 ~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~ 547 (573)
.+|..+..+|++++|+..|.++++.+|+++..++++|.+|+++|+|++|++.|+++++++|++. +++.++.++..++.+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 3678888899999999999999999999999999999999999999999999999999999984 889999999999999
Q ss_pred HHHHHHHhhccccCCCCCC
Q 008244 548 RRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 548 ~~al~~~~~~~~~~~~~~~ 566 (573)
++|+..|+++.+++|...+
T Consensus 82 ~~A~~~~~~al~~~p~~~~ 100 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKD 100 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhCCCCHH
Confidence 9999999999999996543
No 58
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.07 E-value=1.6e-09 Score=85.60 Aligned_cols=82 Identities=29% Similarity=0.378 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~ 539 (573)
+..+..+..+|..+++.++|++|+..|+++++.+|++..+|+++|.+|.+++++++|+..++++++++|++. .+..++.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999999999999984 5566665
Q ss_pred HHH
Q 008244 540 QER 542 (573)
Q Consensus 540 ~~~ 542 (573)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 59
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.07 E-value=7.4e-10 Score=99.93 Aligned_cols=105 Identities=19% Similarity=0.236 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhCcCcH-HHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA-YLESGSF--LQAEADCTKAINLDKKVR-LICAE 537 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~-~~~l~~~--~~Al~~~~~al~l~p~~~-~~~~~ 537 (573)
.....+..+|..++..|+|++|+..|+++++++|+++.++.++|.+ |...+++ ++|+..++++++++|++. .++.+
T Consensus 42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 121 (177)
T 2e2e_A 42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLL 121 (177)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 4578899999999999999999999999999999999999999999 8899999 999999999999999984 88889
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244 538 AQQERCLDITRRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 566 (573)
+.++...+.+++|++.|+++..++|...+
T Consensus 122 a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 122 ASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 99999999999999999999999987543
No 60
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.05 E-value=1.7e-09 Score=90.36 Aligned_cols=102 Identities=25% Similarity=0.291 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQE 541 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~ 541 (573)
.+..+..+|..+++.|++++|++.|+++++.+|++..+++++|.+|...|++++|+..++++++++|++. .++.++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 3778899999999999999999999999999999999999999999999999999999999999999874 777888999
Q ss_pred HHHHHHHHHHHHHhhccccCCCC
Q 008244 542 RCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 542 ~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
...+.+++|++.|++....+|..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999988854
No 61
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.05 E-value=2.7e-09 Score=107.29 Aligned_cols=89 Identities=20% Similarity=0.122 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQE 541 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~ 541 (573)
.+..+.++|..+++.|+|++|+..|+++|+++|+++.+|+++|.+|..+|++++|+.+|+++++++|++. +++.++.++
T Consensus 195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3688999999999999999999999999999999999999999999999999999999999999999985 777778888
Q ss_pred HHHHHHHHHH
Q 008244 542 RCLDITRRQL 551 (573)
Q Consensus 542 ~~~~~~~~al 551 (573)
..++.++++.
T Consensus 275 ~~~~~~~~a~ 284 (336)
T 1p5q_A 275 QRIRRQLARE 284 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887777773
No 62
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.04 E-value=1.9e-09 Score=93.64 Aligned_cols=73 Identities=16% Similarity=0.084 Sum_probs=69.2
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
+|..+..+..+|..+++.|+|++|+..|+++++++|+++.+|+++|.||..+|++++|+..|+++++++|++.
T Consensus 48 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 48 DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 3467889999999999999999999999999999999999999999999999999999999999999999863
No 63
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.04 E-value=1.8e-09 Score=100.27 Aligned_cols=102 Identities=15% Similarity=0.048 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-----------
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----------- 531 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----------- 531 (573)
.+..+.++|..+++.|+|++|++.|+++++++|++..+|+++|.+|..+|++++|+.+|++++++.|++
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 115 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence 367899999999999999999999999999999999999999999999999999999999999988763
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 532 ------RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 532 ------~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
..++.++.++..++.+++|++.|+++..++|..
T Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 478889999999999999999999999999853
No 64
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=1.5e-09 Score=104.67 Aligned_cols=106 Identities=17% Similarity=0.215 Sum_probs=98.2
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----H
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV----R 532 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~----~ 532 (573)
++..+..++.+|..+++.|+|++|+..|+++++.+|++ ..+++++|.||+++|+|++|+..|+++++++|++ .
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 44668899999999999999999999999999999999 9999999999999999999999999999999965 4
Q ss_pred HHHHHHHHHHH--------HHHHHHHHHHHhhccccCCCCC
Q 008244 533 LICAEAQQERC--------LDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 533 ~~~~~~~~~~~--------~~~~~~al~~~~~~~~~~~~~~ 565 (573)
+++.++.++.. .+.+++|++.|++.....|...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 131 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE 131 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence 78899999998 9999999999999999888643
No 65
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.03 E-value=2.4e-09 Score=95.38 Aligned_cols=72 Identities=13% Similarity=0.042 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
|..+..+.++|..+++.|+|++|+..|+++|+++|++..+|+++|.+|..+|++++|+.+|+++++++|++.
T Consensus 42 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 42 PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence 356889999999999999999999999999999999999999999999999999999999999999999984
No 66
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.03 E-value=2.9e-09 Score=94.57 Aligned_cols=73 Identities=14% Similarity=0.061 Sum_probs=70.4
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
++..+..+.++|.++++.|+|++|+..|+++|+++|+++.+|+++|.||..+|+|++|+.+|+++++++|++.
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 5667889999999999999999999999999999999999999999999999999999999999999999986
No 67
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.03 E-value=1.7e-10 Score=121.82 Aligned_cols=99 Identities=37% Similarity=0.507 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQER 542 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~ 542 (573)
+..+.++|+.++++|+|++|++.|+++|+++|++..+|+++|.+|.++|+|++|+++|++|++++|++ ..++.++.++.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444444444444444 24444444444
Q ss_pred HHHHHHHHHHHHhhccccCC
Q 008244 543 CLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 543 ~~~~~~~al~~~~~~~~~~~ 562 (573)
.++++++|++.|+++.+++|
T Consensus 86 ~~g~~~eA~~~~~~al~~~p 105 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKP 105 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHST
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 44444444444444444444
No 68
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.03 E-value=3.6e-09 Score=102.06 Aligned_cols=106 Identities=10% Similarity=0.025 Sum_probs=96.5
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA 538 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~ 538 (573)
++..+..+..+|..++..|++++|+..|+++++++|++..+|.++|.+|..+|++++|+..|+++++++|++ ..++.++
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 118 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence 467788999999999999999999999999999999999999999999999999999999999999999987 5888889
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244 539 QQERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 539 ~~~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
.++..++.+++|++.|+++..++|...
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 999999999999999999998888643
No 69
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.03 E-value=1.7e-09 Score=94.86 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=69.1
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
+|..+..|..+|..+.+.|+|++|+..|+++++++|+++.+|+++|.||..+|++++|+..|+++++++|++.
T Consensus 51 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 51 DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3466889999999999999999999999999999999999999999999999999999999999999998863
No 70
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=5.4e-10 Score=123.52 Aligned_cols=103 Identities=9% Similarity=-0.082 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~ 539 (573)
|+.+..++++|..+++.|+|++|++.|+++++++|+++.+|+++|.+|.++|+|++ +++|++|++++|++ .+++.++.
T Consensus 464 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 464 GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHH
Confidence 46688899999999999999999999999999999999999999999999999999 99999999999998 48888999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCC
Q 008244 540 QERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
++..++++++|++.|+++.+++|..
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l~P~~ 567 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPTSRHF 567 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred HHHHcCCHHHHHHHHHhhcccCccc
Confidence 9999999999999999999999864
No 71
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.02 E-value=3.4e-09 Score=89.65 Aligned_cols=72 Identities=19% Similarity=0.144 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCcH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD------KKVR 532 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~------p~~~ 532 (573)
|..+..+.++|..+++.|+|++|+..|+++++++|++..+|+++|.+|..+|++++|+.+|+++++++ |++.
T Consensus 35 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~ 112 (126)
T 3upv_A 35 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR 112 (126)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999 7764
No 72
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.01 E-value=1.2e-10 Score=97.64 Aligned_cols=73 Identities=18% Similarity=0.047 Sum_probs=70.5
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
+|.....+.++|..+++.|+|++|+..|+++++++|+++.+++++|.||.++|++++|+..++++++++|++.
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 5888999999999999999999999999999999999999999999999999999999999999999999986
No 73
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.01 E-value=6.5e-09 Score=91.93 Aligned_cols=105 Identities=36% Similarity=0.470 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~ 539 (573)
.+.+..+..+|..++..|+|++|+..|+++++.+|++..+|+++|.+|..+|++++|+..++++++++|++ ..++.++.
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 46688999999999999999999999999999999999999999999999999999999999999999998 48888999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCC
Q 008244 540 QERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
++..++.+++|++.|+++..++|...
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~ 115 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDK 115 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999988643
No 74
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.01 E-value=5.7e-09 Score=99.41 Aligned_cols=102 Identities=31% Similarity=0.394 Sum_probs=97.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA 538 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~ 538 (573)
+|.....+..+|..+++.|+|++|+..|+++++.+|++..+|.++|.+|..+|++++|+..|+++++++|++ ..++.++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 214 (258)
T 3uq3_A 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 214 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999999999999999999999998 4888899
Q ss_pred HHHHHHHHHHHHHHHHhhccccC
Q 008244 539 QQERCLDITRRQLKIFHMHWSWS 561 (573)
Q Consensus 539 ~~~~~~~~~~~al~~~~~~~~~~ 561 (573)
.++..++.+++|++.|+++.+++
T Consensus 215 ~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 215 TAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999999999888
No 75
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.00 E-value=2.8e-09 Score=89.13 Aligned_cols=90 Identities=14% Similarity=0.076 Sum_probs=79.9
Q ss_pred HcCCHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHH
Q 008244 476 KDKQWLKAISFYTEAIKL---NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQL 551 (573)
Q Consensus 476 ~~~~~~~Ai~~y~~ai~~---~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al 551 (573)
..|+|++|+..|+++|++ +|++..+|+++|.+|..+|+|++|+..|+++++++|++. .++.++.++..++.+++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 699999999999999999999999999999999999984 8888999999999999999
Q ss_pred HHHhhccccCCCCC
Q 008244 552 KIFHMHWSWSPPIK 565 (573)
Q Consensus 552 ~~~~~~~~~~~~~~ 565 (573)
+.|+++....|..+
T Consensus 82 ~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 82 ELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHCCCH
T ss_pred HHHHHHHHhCCCcH
Confidence 99999998877543
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.99 E-value=2.3e-09 Score=113.19 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQW-LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~-~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~ 539 (573)
+..+..+..+|..++..|+| ++|++.|+++++++|+++.+|+++|.+|.++|++++|++.|+++++++|+...++.++.
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~ 178 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSM 178 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 35689999999999999999 99999999999999999999999999999999999999999999999999778889999
Q ss_pred HHHHH---------HHHHHHHHHHhhccccCCCC
Q 008244 540 QERCL---------DITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 540 ~~~~~---------~~~~~al~~~~~~~~~~~~~ 564 (573)
++..+ +.+++|++.|+++..++|..
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 212 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD 212 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC
Confidence 99999 99999999999999999864
No 77
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.96 E-value=2.1e-09 Score=90.74 Aligned_cols=72 Identities=13% Similarity=-0.035 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
|+.+..+..+|..+.+.|++++|+..|+++++++|++..+|+++|.+|..+|++++|+..++++++++|++.
T Consensus 48 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 48 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999863
No 78
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.96 E-value=6.3e-09 Score=109.29 Aligned_cols=91 Identities=14% Similarity=0.094 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQE 541 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~ 541 (573)
....+.++|.++++.++|++|+..|+++|+++|++..+|+++|.+|+.+++|++|+.+|++|++++|++. ++..++.++
T Consensus 316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3688999999999999999999999999999999999999999999999999999999999999999985 777788888
Q ss_pred HHHHHHHHHHHH
Q 008244 542 RCLDITRRQLKI 553 (573)
Q Consensus 542 ~~~~~~~~al~~ 553 (573)
..++.++++.+.
T Consensus 396 ~~~~~~~~a~~~ 407 (457)
T 1kt0_A 396 KKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777776654
No 79
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.95 E-value=4.6e-09 Score=110.90 Aligned_cols=104 Identities=14% Similarity=0.046 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~ 539 (573)
|+.+..+.++|..+++.|+|++|++.|+++++++|+++.+|+++|.+|.++|++++|++.|+++++++|++. .+..++.
T Consensus 37 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~ 116 (477)
T 1wao_1 37 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 116 (477)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999999999999999999999999999974 5555555
Q ss_pred H--HHHHHHHHHHHHHHh-----------hccccCCCC
Q 008244 540 Q--ERCLDITRRQLKIFH-----------MHWSWSPPI 564 (573)
Q Consensus 540 ~--~~~~~~~~~al~~~~-----------~~~~~~~~~ 564 (573)
+ +...+++++|++.++ .+..++|..
T Consensus 117 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 117 CNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 5 666799999999999 777766654
No 80
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.94 E-value=9.1e-09 Score=104.82 Aligned_cols=95 Identities=18% Similarity=0.184 Sum_probs=86.2
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAE 537 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~ 537 (573)
.++..+..+.++|..+++.++|++|++.|+++|+++|+++.+|+++|.+|..+++|++|+.+|++|++++|++. ....+
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l 347 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999985 66667
Q ss_pred HHHHHHHHHHHHHHHH
Q 008244 538 AQQERCLDITRRQLKI 553 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~ 553 (573)
+.++..++.++++.+.
T Consensus 348 ~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888877877777655
No 81
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.94 E-value=1.3e-08 Score=85.87 Aligned_cols=102 Identities=23% Similarity=0.298 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~ 540 (573)
.....+...|..+.+.|++++|+..|+++++..|++..++.++|.++...|++++|++.++++++++|++ ..++.++.+
T Consensus 33 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 112 (136)
T 2fo7_A 33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 112 (136)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3467888999999999999999999999999999999999999999999999999999999999999987 477788899
Q ss_pred HHHHHHHHHHHHHHhhccccCCC
Q 008244 541 ERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
+...+.+++|.+.|+.....+|.
T Consensus 113 ~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 113 YYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHccHHHHHHHHHHHHccCCC
Confidence 98899999999999999887774
No 82
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.93 E-value=9e-09 Score=94.71 Aligned_cols=96 Identities=18% Similarity=0.126 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQER 542 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~ 542 (573)
...+.++|..+++.|+|++|+..|+++++++|++..+|+++|.+|..+|++++|+..|+++++++|++. ....++.+..
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999999999999985 6677778888
Q ss_pred HHHHHHHHH-HHHhhccc
Q 008244 543 CLDITRRQL-KIFHMHWS 559 (573)
Q Consensus 543 ~~~~~~~al-~~~~~~~~ 559 (573)
.++..+++. +.|...+.
T Consensus 168 ~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 887777776 44444443
No 83
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.92 E-value=1.5e-09 Score=119.94 Aligned_cols=106 Identities=17% Similarity=0.061 Sum_probs=99.7
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAE 537 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~ 537 (573)
.+|+.+..+..+|..+++.|+|++|++.|+++++++|+++.+|+++|.+|+.+|+|++|+++|++|++++|++ .+++.+
T Consensus 428 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l 507 (681)
T 2pzi_A 428 DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLAL 507 (681)
T ss_dssp CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 3456788999999999999999999999999999999999999999999999999999999999999999998 588899
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244 538 AQQERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
+.++..++++++ ++.|+++++++|...
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~~~P~~~ 534 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWSTNDGVI 534 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHHHCTTCH
T ss_pred HHHHHHcCChHH-HHHHHHHHHhCCchH
Confidence 999999999999 999999999999654
No 84
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.92 E-value=5.8e-09 Score=105.56 Aligned_cols=102 Identities=13% Similarity=0.110 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQE 541 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~ 541 (573)
.+..+..+|..+.+.|++++|++.|+++++++|+++.+|+++|.+|.++|++++|+..|+++++++|++ ..++.++.++
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999998 4888899999
Q ss_pred HHHHHHHHHHHHHhhccccCCCC
Q 008244 542 RCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 542 ~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
..++.+++|++.|+++..+.|..
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC
T ss_pred HHCCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999988754
No 85
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.92 E-value=1e-08 Score=110.74 Aligned_cols=104 Identities=13% Similarity=0.005 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~ 539 (573)
|+....+.++|..+.+.|++++|++.|+++++++|++..+|+++|.+|.++|++++|++.|+++++++|++. .++.++.
T Consensus 54 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 133 (568)
T 2vsy_A 54 PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN 133 (568)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999999999999999999999984 7888899
Q ss_pred HHHHH---HHHHHHHHHHhhccccCCCC
Q 008244 540 QERCL---DITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 540 ~~~~~---~~~~~al~~~~~~~~~~~~~ 564 (573)
++..+ +.+++|.+.|+++...+|..
T Consensus 134 ~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 134 WRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 99999 99999999999999988864
No 86
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.91 E-value=3.8e-09 Score=114.26 Aligned_cols=105 Identities=5% Similarity=-0.117 Sum_probs=98.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA 538 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~ 538 (573)
+|+....+.++|..+++.|+|++|++.|+++++++|++..+|+++|.+|..+|++++|++.|+++++++|++ ..++.++
T Consensus 19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 98 (568)
T 2vsy_A 19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLG 98 (568)
T ss_dssp --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 446688999999999999999999999999999999999999999999999999999999999999999998 4888899
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 539 QQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 539 ~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
.++..++++++|++.|+++.+++|..
T Consensus 99 ~~~~~~g~~~~A~~~~~~al~~~p~~ 124 (568)
T 2vsy_A 99 HALEDAGQAEAAAAAYTRAHQLLPEE 124 (568)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999998854
No 87
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.91 E-value=9.6e-09 Score=87.38 Aligned_cols=87 Identities=9% Similarity=0.135 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHH
Q 008244 437 MYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------ATYYSNRAAAYL 509 (573)
Q Consensus 437 le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~-------~~~~~n~a~~~~ 509 (573)
+++++....+.+.. +|+.+..+.++|.++++.|+|++|++.|+++|+++|++ +.+|+++|.+|.
T Consensus 24 ~~~A~~~y~~Al~~---------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~ 94 (127)
T 4gcn_A 24 FEKAHVHYDKAIEL---------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ 94 (127)
T ss_dssp HHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 44455554444443 34668899999999999999999999999999998875 468999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCcCcH
Q 008244 510 ESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 510 ~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
.++++++|++.|+++++++|+..
T Consensus 95 ~~~~~~~A~~~~~kal~~~~~~~ 117 (127)
T 4gcn_A 95 KQNDLSLAVQWFHRSLSEFRDPE 117 (127)
T ss_dssp HTTCHHHHHHHHHHHHHHSCCHH
T ss_pred HcCCHHHHHHHHHHHHhhCcCHH
Confidence 99999999999999999998754
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.91 E-value=6.8e-09 Score=100.01 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHHcCCHH
Q 008244 461 KQSAEIAKEKGNQAYK--------DKQWLKAISFYTEAIKLNGNNATYY-----------------SNRAAAYLESGSFL 515 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~--------~~~~~~Ai~~y~~ai~~~p~~~~~~-----------------~n~a~~~~~l~~~~ 515 (573)
+.....++.+|..+++ .|++++|+..|+++++..|++..++ +++|.+|+++|+|+
T Consensus 86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 165 (261)
T 3qky_A 86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYE 165 (261)
T ss_dssp TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 4556778888888888 8888888888888888888775444 77888888888888
Q ss_pred HHHHHHHHHHHhCcCc----HHHHHHHHHHHHH----------HHHHHHHHHHhhccccCCCC
Q 008244 516 QAEADCTKAINLDKKV----RLICAEAQQERCL----------DITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 516 ~Al~~~~~al~l~p~~----~~~~~~~~~~~~~----------~~~~~al~~~~~~~~~~~~~ 564 (573)
+|+..|+++++.+|++ .+++.++.++..+ +.+++|++.|.+.....|..
T Consensus 166 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 166 AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 8888888888888874 3677777777766 78888888888888777753
No 89
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.90 E-value=1.3e-08 Score=91.32 Aligned_cols=104 Identities=14% Similarity=0.053 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~ 540 (573)
.....+..+|..+++.|++++|++.|+++++.+|++..++.++|.+|..+|++++|+..++++++++|++ ..++.++.+
T Consensus 74 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 153 (186)
T 3as5_A 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFS 153 (186)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999999988 478888999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCC
Q 008244 541 ERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
+...+.+++|++.|++..++.|...
T Consensus 154 ~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 154 YEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCch
Confidence 9999999999999999988877543
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.90 E-value=1.6e-08 Score=95.13 Aligned_cols=102 Identities=14% Similarity=0.101 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH----HHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR----LICA 536 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~----~~~~ 536 (573)
+..++++|..+++.|+|++|+..|+++++..|++ ..+++++|.||+++|+|++|+..|+++++++|++. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 6778999999999999999999999999999986 47999999999999999999999999999999973 6778
Q ss_pred HHHHHHH------------------HHHHHHHHHHHhhccccCCCCC
Q 008244 537 EAQQERC------------------LDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 537 ~~~~~~~------------------~~~~~~al~~~~~~~~~~~~~~ 565 (573)
++.++.. .+.+++|++.|+...+..|...
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~ 130 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ 130 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence 8877665 4789999999999999888654
No 91
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.89 E-value=3.7e-09 Score=111.66 Aligned_cols=100 Identities=13% Similarity=0.058 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHh
Q 008244 465 EIAKEKGNQAYKD---------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES--------GSFLQAEADCTKAINL 527 (573)
Q Consensus 465 ~~~~~~g~~~~~~---------~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l--------~~~~~Al~~~~~al~l 527 (573)
..+.++|..+.+. |+|++|++.|+++++++|++..+|+++|.+|..+ +++++|+..|++++++
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 250 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 5566666666666 6666666666666666666666666666666666 6666666666666666
Q ss_pred Cc---Cc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 528 DK---KV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 528 ~p---~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
+| ++ ..++.++.++..++.+++|++.|+++..++|..
T Consensus 251 ~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 251 DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 66 44 356666666666666666666666666666643
No 92
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.88 E-value=9.2e-09 Score=85.49 Aligned_cols=71 Identities=8% Similarity=0.075 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
|..+..+..+|..+++.|+|++|+..|+++++++|++..+|+++|.+|..+|++++|+..|+++++++|+.
T Consensus 16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 35578999999999999999999999999999999999999999999999999999999999999999865
No 93
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.87 E-value=1.3e-08 Score=101.79 Aligned_cols=100 Identities=21% Similarity=0.151 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQE 541 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~ 541 (573)
+++.+..+|..+++.|+|++|+..|+++++.+|+++.+|+++|.+|..+|++++|+..|+++++++|++ ..++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999988 4888899999
Q ss_pred HHHHHHHHHHHHHhhccccCC
Q 008244 542 RCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 542 ~~~~~~~~al~~~~~~~~~~~ 562 (573)
...+.+++|++.|++..+..|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNP 102 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCC
T ss_pred HHcCChHHHHHHHHHHHhcCC
Confidence 999999999999999999888
No 94
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.86 E-value=2.4e-08 Score=100.75 Aligned_cols=123 Identities=12% Similarity=0.060 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCccChH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 008244 433 TVQNMYASLQEQADIATKSKLSTNTFNQKQ--SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE 510 (573)
Q Consensus 433 ~a~~le~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~ 510 (573)
....+++++..........+ . .+..+..+|..+++.|++++|+..|+++++++|+++.+|+++|.+|.+
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 263 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDP---------TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN 263 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHST---------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCc---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 44455555555444444333 3 578899999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 511 SGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 511 l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
+|++++|+..|+++++++|++ ..++.++.++..++.+++|++.|+++..+.|..
T Consensus 264 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 264 GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998 488889999999999999999999999887754
No 95
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.86 E-value=1.3e-08 Score=94.50 Aligned_cols=101 Identities=16% Similarity=0.086 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~ 540 (573)
..+..++++|..+++.|+|++|+..|++++ +| ++.+|+++|.+|.++|++++|+..|+++++++|++. .++.++.+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 456788999999999999999999999996 33 789999999999999999999999999999999984 88889999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCC
Q 008244 541 ERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
+..++.+++|++.|+++..+.|...
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHcccHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999887543
No 96
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.85 E-value=1.6e-08 Score=105.27 Aligned_cols=108 Identities=20% Similarity=0.151 Sum_probs=99.2
Q ss_pred CccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHH
Q 008244 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LIC 535 (573)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~ 535 (573)
...+|..+..+..+|..+++.|+|++|+..|+++++.+|++..+|+++|.+|..+|++++|+..|+++++++|++. .++
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 98 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL 98 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3456788999999999999999999999999999999999999999999999999999999999999999999984 888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 536 AEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 536 ~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
.++.++..++.+++|++.|++....+|..
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 127 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSE 127 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 88999999999999999999999988853
No 97
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.85 E-value=1.2e-08 Score=107.91 Aligned_cols=102 Identities=24% Similarity=0.328 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~ 539 (573)
.+.++.+..+|+.+++.|+|++|+..|+++++.+| ++.+|.++|.||+++|++++|+.+|+++++++|++ .+++.++.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 46789999999999999999999999999999999 69999999999999999999999999999999998 48899999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCC
Q 008244 540 QERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
++..++.+++|++.|++.....|.
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~ 105 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDF 105 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCC
Confidence 999999999999999999988874
No 98
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.85 E-value=2.7e-08 Score=89.23 Aligned_cols=104 Identities=10% Similarity=0.010 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~ 539 (573)
+.....+..+|..+++.|++++|++.|+++++.+|++..++.++|.+|...|++++|++.++++++++|++. .++.++.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 118 (186)
T 3as5_A 39 AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGV 118 (186)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHH
Confidence 345788999999999999999999999999999999999999999999999999999999999999999884 7788889
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCC
Q 008244 540 QERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
++...+.+++|++.|+......|..
T Consensus 119 ~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 119 ALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHcCcHHHHHHHHHHHHhcCccc
Confidence 9999999999999999999887753
No 99
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.85 E-value=8.2e-09 Score=104.44 Aligned_cols=104 Identities=15% Similarity=0.076 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~ 540 (573)
..+..++.+|..+++.|+|++|+..|+++++.+|++..+|+++|.+|.++|++++|+..|+++++++|++ ..++.++.+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4466799999999999999999999999999999999999999999999999999999999999999998 488889999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCC
Q 008244 541 ERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
+..++.+++|++.|+++.++.|...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~ 167 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYK 167 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccch
Confidence 9999999999999999998887533
No 100
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.84 E-value=7.6e-09 Score=110.31 Aligned_cols=104 Identities=23% Similarity=0.337 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~ 539 (573)
.+.++.+..+|+.+++.|+|++|+..|+++++.+|+++.+|+++|.||.++|++++|++.|+++++++|++ ..++.++.
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999998 48889999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCC
Q 008244 540 QERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
++..++.+++|++.|+ ...++|...
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~~~~~ 126 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLNGDFD 126 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC------
T ss_pred HHHHcCCHHHHHHHHH-HHhcCCCCC
Confidence 9999999999999996 777777543
No 101
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.84 E-value=1.5e-08 Score=99.65 Aligned_cols=105 Identities=16% Similarity=0.141 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH--
Q 008244 462 QSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-- 532 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~-~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-- 532 (573)
..+..+.++|..+.+. |++++|+.+|++++++.|.+ ..+|.++|.+|.++|+|++|+..|+++++++|++.
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence 4477899999999996 99999999999999998854 57899999999999999999999999999998752
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244 533 ------LICAEAQQERCLDITRRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 533 ------~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 566 (573)
.++.++.++..++.+++|++.|+++..++|...+
T Consensus 195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 4677889999999999999999999999996543
No 102
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.84 E-value=1.3e-08 Score=96.82 Aligned_cols=101 Identities=24% Similarity=0.355 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--------H
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV--------R 532 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~--------~ 532 (573)
++.++.+..+|..+++.|+|++|+..|+++++.+ ++..+|.++|.+|..+|++++|+..++++++++|++ .
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 4568889999999999999999999999999999 889999999999999999999999999999998865 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244 533 LICAEAQQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 533 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
.++.++.++..++.+++|++.|+++..+.|
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 110 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHR 110 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCc
Confidence 777888888888999999999998888665
No 103
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.84 E-value=2.1e-08 Score=84.59 Aligned_cols=100 Identities=21% Similarity=0.274 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHH
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERC 543 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~ 543 (573)
..+..+|..+++.|++++|+..|+++++.+|++...+++++.++...+++++|+..++++++++|++. .++..+.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999874 77778888888
Q ss_pred HHHHHHHHHHHhhccccCCCC
Q 008244 544 LDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 544 ~~~~~~al~~~~~~~~~~~~~ 564 (573)
.+.+++|++.|+...+..|..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~ 102 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRS 102 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC
T ss_pred hcCHHHHHHHHHHHHHhCCCC
Confidence 999999999999998887753
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=7.1e-09 Score=93.56 Aligned_cols=107 Identities=12% Similarity=0.046 Sum_probs=73.1
Q ss_pred CccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCc-HHH
Q 008244 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYL-ESGSFLQAEADCTKAINLDKKV-RLI 534 (573)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~-~l~~~~~Al~~~~~al~l~p~~-~~~ 534 (573)
...+|+.+..+..+|..+.+.|++++|+..|+++++.+| ++.++..++.+.+ ..++..+|+..++++++++|++ ..+
T Consensus 33 l~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~ 111 (176)
T 2r5s_A 33 SDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELA 111 (176)
T ss_dssp CHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHH
Confidence 345677788888899999999999888888777777766 6555554443322 2223334566677777777766 366
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 535 CAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 535 ~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
+.++.++...+++++|++.|++....+|..
T Consensus 112 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 112 CELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 666777777777777777777777777653
No 105
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.83 E-value=5.2e-09 Score=105.29 Aligned_cols=101 Identities=14% Similarity=0.037 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHH-
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQER- 542 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~- 542 (573)
..+.++|..+++.++|++|+..|+++|+++|++..+|+++|.+|+.+|+|++|+.+|+++++++|++. ++..++.+..
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999985 5555555533
Q ss_pred HHHHHHHHHHHHhhccccCCCCC
Q 008244 543 CLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 543 ~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
..+..+++.+.|...+..+|...
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCC
Confidence 33667777888888888887543
No 106
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.83 E-value=3.7e-08 Score=94.81 Aligned_cols=102 Identities=13% Similarity=0.011 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLICAEAQQE 541 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~ 541 (573)
.....+..+|..+++.|+|++|++.|+++++++|++..+|.++|.+|.++|++++|+..++++++++|++..........
T Consensus 75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (275)
T 1xnf_A 75 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA 154 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999986433333444
Q ss_pred HHHHHHHHHHHHHhhccccCCC
Q 008244 542 RCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 542 ~~~~~~~~al~~~~~~~~~~~~ 563 (573)
...+.+++|++.|.......|.
T Consensus 155 ~~~~~~~~A~~~~~~~~~~~~~ 176 (275)
T 1xnf_A 155 EQKLDEKQAKEVLKQHFEKSDK 176 (275)
T ss_dssp HHHHCHHHHHHHHHHHHHHSCC
T ss_pred HHhcCHHHHHHHHHHHHhcCCc
Confidence 5568899999999887776664
No 107
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.82 E-value=3e-08 Score=92.13 Aligned_cols=103 Identities=10% Similarity=-0.111 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCcCc-HHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-GSFLQAEADCTKAIN--LDKKV-RLICA 536 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l-~~~~~Al~~~~~al~--l~p~~-~~~~~ 536 (573)
|.....+..+|..+...|++++|++.|+++++.+|++..++.++|.+|..+ |++++|+..++++++ .+|.. ..++.
T Consensus 39 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 118 (225)
T 2vq2_A 39 PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLN 118 (225)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHH
Confidence 344566777777777777777777777777777777777777777777777 777777777777777 34443 35666
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 537 EAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 537 ~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
++.++...+.+++|++.|+...+..|.
T Consensus 119 l~~~~~~~~~~~~A~~~~~~~~~~~~~ 145 (225)
T 2vq2_A 119 KGICSAKQGQFGLAEAYLKRSLAAQPQ 145 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 677777777777777777777766654
No 108
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.82 E-value=3.6e-08 Score=92.98 Aligned_cols=100 Identities=13% Similarity=0.098 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQER 542 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~ 542 (573)
...+..+|..+++.|++++|++.|+++++.+|++..++.++|.+|.+.|++++|+..++++++++|++. .++.++.++.
T Consensus 125 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 204 (243)
T 2q7f_A 125 GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYA 204 (243)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 445566666666666666666666666666666666666666666666666666666666666666553 5555566666
Q ss_pred HHHHHHHHHHHHhhccccCCC
Q 008244 543 CLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 543 ~~~~~~~al~~~~~~~~~~~~ 563 (573)
..+.+++|++.|++...++|.
T Consensus 205 ~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 205 YKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HTTCTTHHHHHHHHHHHHCTT
T ss_pred HccCHHHHHHHHHHHHccCcc
Confidence 666666666666666666554
No 109
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.82 E-value=2.1e-08 Score=95.46 Aligned_cols=108 Identities=9% Similarity=0.028 Sum_probs=99.3
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAE 537 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~ 537 (573)
..+.....+..+|..+++.|++++|++.|+++++.+|++..++.++|.+|..+|++++|+..++++++++|++. .+..+
T Consensus 136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 215 (252)
T 2ho1_A 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLG 215 (252)
T ss_dssp TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999884 77778
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244 538 AQQERCLDITRRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 538 ~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 566 (573)
+.++...+.+++|.+.|+......|...+
T Consensus 216 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 216 IRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 88888899999999999999998886544
No 110
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.81 E-value=3.7e-08 Score=83.32 Aligned_cols=81 Identities=19% Similarity=0.136 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~ 540 (573)
.....+..+|..+++.|++++|++.|+++++++|++..+|+++|.+|.++|++++|+..++++++++|++ ..+..++.+
T Consensus 48 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 127 (133)
T 2lni_A 48 KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 127 (133)
T ss_dssp TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999999987 455555655
Q ss_pred HH
Q 008244 541 ER 542 (573)
Q Consensus 541 ~~ 542 (573)
+.
T Consensus 128 ~~ 129 (133)
T 2lni_A 128 MM 129 (133)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 111
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.81 E-value=4e-08 Score=82.56 Aligned_cols=84 Identities=18% Similarity=0.080 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~ 540 (573)
.....+..+|..+++.|++++|++.|+++++.+|++..+|+++|.+|..+|++++|+..++++++++|++. ....++.+
T Consensus 44 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 123 (131)
T 2vyi_A 44 ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123 (131)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999874 55566666
Q ss_pred HHHHH
Q 008244 541 ERCLD 545 (573)
Q Consensus 541 ~~~~~ 545 (573)
+..++
T Consensus 124 ~~~~~ 128 (131)
T 2vyi_A 124 ELKLR 128 (131)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55443
No 112
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.81 E-value=2.4e-08 Score=94.19 Aligned_cols=100 Identities=12% Similarity=0.044 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQER 542 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~ 542 (573)
...+..+|..+.+.|++++|++.|+++++.+|++..++.++|.+|.++|++++|+..++++++++|++ ..++.++.++.
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666666666655 35555566666
Q ss_pred HHHHHHHHHHHHhhccccCCC
Q 008244 543 CLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 543 ~~~~~~~al~~~~~~~~~~~~ 563 (573)
..+.+++|++.|+...+..|.
T Consensus 171 ~~~~~~~A~~~~~~~~~~~~~ 191 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQDPG 191 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHCTT
T ss_pred HcCCHHHHHHHHHHHHHhCcc
Confidence 666666666666666555553
No 113
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.80 E-value=2.5e-08 Score=101.84 Aligned_cols=100 Identities=17% Similarity=0.079 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQER 542 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~ 542 (573)
...+..+|..+.+.|++++|++.|+++++++|++..+|.+++.+|.+.|++++|+..|+++++++|++. .++.++.++.
T Consensus 271 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 350 (388)
T 1w3b_A 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350 (388)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555555555555555555555555555542 4555555555
Q ss_pred HHHHHHHHHHHHhhccccCCC
Q 008244 543 CLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 543 ~~~~~~~al~~~~~~~~~~~~ 563 (573)
..+.+++|++.|+++.+++|.
T Consensus 351 ~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 351 QQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp TTTCCHHHHHHHHHHHTTCTT
T ss_pred HcCCHHHHHHHHHHHHhhCCC
Confidence 555556666666555555553
No 114
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.80 E-value=1.6e-08 Score=103.23 Aligned_cols=103 Identities=21% Similarity=0.178 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~ 540 (573)
+....+.++|..+++.|++++|++.|+++++++|+++.+|.++|.+|.++|++++|+..|+++++++|++. .+..++.+
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 55788999999999999999999999999999999999999999999999999999999999999999984 77888999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCC
Q 008244 541 ERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
+...+.+++|++.|+++.+..|..
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~ 338 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEF 338 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999988864
No 115
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.80 E-value=7.6e-08 Score=82.20 Aligned_cols=69 Identities=22% Similarity=0.125 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~ 530 (573)
.....+.++|..+++.|+|++|+..|+++++++|++..+|+++|.+|..+|++++|+..|+++++++|+
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 41 LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 557899999999999999999999999999999999999999999999999999999999999999988
No 116
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.80 E-value=4.7e-08 Score=96.72 Aligned_cols=105 Identities=12% Similarity=0.125 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~---------p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
|.....+..+|..+++.|++++|+..|++++++. |....+|.++|.+|.++|++++|+..++++++++|++
T Consensus 190 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 269 (330)
T 3hym_B 190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN 269 (330)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc
Confidence 3457889999999999999999999999999987 6778999999999999999999999999999999997
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244 532 -RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 532 -~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
..++.++.++..++.+++|++.|+++.+++|...
T Consensus 270 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 304 (330)
T 3hym_B 270 ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT 304 (330)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence 5888899999999999999999999999998643
No 117
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.79 E-value=1.2e-07 Score=79.98 Aligned_cols=72 Identities=8% Similarity=0.010 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
+.....+..+|..+++.|+|++|+..|+++++.+|++ +.+++++|.||.++|++++|+..++++++.+|++.
T Consensus 36 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 36 VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 3445789999999999999999999999999999999 89999999999999999999999999999999985
No 118
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.78 E-value=2.2e-08 Score=94.28 Aligned_cols=107 Identities=13% Similarity=0.061 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHH
Q 008244 463 SAEIAKEKGNQAYK------------------DKQWLKAISFYTEAIKLNGNNATYY-----------------SNRAAA 507 (573)
Q Consensus 463 ~~~~~~~~g~~~~~------------------~~~~~~Ai~~y~~ai~~~p~~~~~~-----------------~n~a~~ 507 (573)
....++.+|..+++ .|++++|+..|+++|+..|++..++ ..+|.+
T Consensus 77 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~ 156 (225)
T 2yhc_A 77 IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEY 156 (225)
T ss_dssp HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666654 4677777777777777777765333 566777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCc
Q 008244 508 YLESGSFLQAEADCTKAINLDKKV----RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKEHPF 569 (573)
Q Consensus 508 ~~~l~~~~~Al~~~~~al~l~p~~----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 569 (573)
|++.|++++|+..|+++++..|++ .+++.++.++..++.+++|.+.|+......|...||++
T Consensus 157 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~~~ 222 (225)
T 2yhc_A 157 YTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEHHH 222 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCCTT
T ss_pred HHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhhcc
Confidence 777888888888888888887775 36777778888788888888888877777776666553
No 119
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.77 E-value=1e-07 Score=78.44 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQ 539 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~ 539 (573)
.....+..+|..+++.|+|++|+..|+++++.+|++..+++++|.+|..+|++++|+..++++++++|++. .....+.
T Consensus 36 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 36 HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999985 4444443
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.77 E-value=4.4e-08 Score=95.72 Aligned_cols=103 Identities=18% Similarity=0.072 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH--------
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-------- 532 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-------- 532 (573)
|..+..+.++|..+++.|+|++|+..|+++++++|++..+|+++|.+|..+|++++|+..|+++++++|++.
T Consensus 35 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~ 114 (281)
T 2c2l_A 35 PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP 114 (281)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHH
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHH
Confidence 356889999999999999999999999999999999999999999999999999999999999999998641
Q ss_pred HHHHHHHH----------------------HHHHHHHHHHHHHHhhccccCCC
Q 008244 533 LICAEAQQ----------------------ERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 533 ~~~~~~~~----------------------~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
....+++. ....+.+++|++.|+.+..++|.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~ 167 (281)
T 2c2l_A 115 SALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHED 167 (281)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 11111110 01246778888888888877774
No 121
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.77 E-value=1.6e-08 Score=97.39 Aligned_cols=102 Identities=17% Similarity=0.080 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQE 541 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~ 541 (573)
.+..+..+|..+.+.|++++|++.|+++++++|++..+|.++|.+|..+|++++|+..++++++++|++. .++.++...
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 152 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY 152 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 3667888999999999999999999999999999999999999999999999999999999999988874 666667344
Q ss_pred HHHHHHHHHHHHHhhccccCCCC
Q 008244 542 RCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 542 ~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
...+.+++|++.|+++.+++|..
T Consensus 153 ~~~~~~~~A~~~~~~a~~~~p~~ 175 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLELKPNI 175 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCccc
Confidence 44558888888888888887753
No 122
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.77 E-value=1.3e-08 Score=84.61 Aligned_cols=83 Identities=8% Similarity=-0.033 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244 481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 481 ~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~ 559 (573)
++|++.|+++++.+|+++.+|+++|.+|+.+|++++|+..|+++++++|++. .++.++.++..++.+++|.+.|+++..
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999984 888899999999999999999999988
Q ss_pred cCCC
Q 008244 560 WSPP 563 (573)
Q Consensus 560 ~~~~ 563 (573)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7764
No 123
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=7.2e-08 Score=83.26 Aligned_cols=71 Identities=21% Similarity=0.253 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
.....+.++|..+++.++|++|+..|+++++++|++..+|+++|.+|..++++++|+..++++++++|++.
T Consensus 63 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 63 DQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 34888999999999999999999999999999999999999999999999999999999999999999985
No 124
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.76 E-value=7.2e-08 Score=95.21 Aligned_cols=102 Identities=12% Similarity=0.082 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~ 540 (573)
.....+..+|..+++.|++++|++.|+++++.+|++..+|.++|.+|..+|++++|+..++++++++|++ ..++.++.+
T Consensus 170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999999999999999999999997 478888999
Q ss_pred HHHHHHHHHHHHHHhhccccCCC
Q 008244 541 ERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
+..++.+++|++.|+++..+.|.
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHhccHHHHHHHHHHHHHhCCc
Confidence 99999999999999999988875
No 125
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.76 E-value=2.6e-08 Score=97.64 Aligned_cols=103 Identities=15% Similarity=0.099 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH------------------
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK------------------ 523 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~------------------ 523 (573)
.....+.++|..+.+.|++++|+..|+++++.+|+++.+++++|.+|..+|++++|+..+++
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999998887655554
Q ss_pred ----------------HHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 524 ----------------AINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 524 ----------------al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
+++++|++ .+++.++.++...+++++|++.|....+.+|..
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 45566666 366777788888888888888888888888865
No 126
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.76 E-value=4.2e-08 Score=98.95 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQER 542 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~ 542 (573)
...+.++|..+++.|+|++|+..|+++++.+|++..+|+++|.+|..+|++++|+..|+++++++|++ ..++.++.++.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999998 48888899999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCC
Q 008244 543 CLDITRRQLKIFHMHWSWSPPIKEH 567 (573)
Q Consensus 543 ~~~~~~~al~~~~~~~~~~~~~~~~ 567 (573)
..+.+++|++.|++...+.|...+.
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~ 168 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHL 168 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGG
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 9999999999999999998865443
No 127
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.75 E-value=2.7e-08 Score=97.77 Aligned_cols=106 Identities=9% Similarity=-0.063 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCc--
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLES-GSFLQAEADCTKAINLDKKV-- 531 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l-~~~~~Al~~~~~al~l~p~~-- 531 (573)
+..+..+.+.|..+.+.|+|++|+.+|+++|++.+.. ..+|.++|.+|... |++++|+.+|++|+++.|+.
T Consensus 74 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence 3457899999999999999999999999999998754 57999999999995 99999999999999998863
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244 532 -----RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 532 -----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 566 (573)
..+..++.++..++++++|+..|+++..+.|....
T Consensus 154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence 35677889999999999999999999998886544
No 128
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.75 E-value=6.9e-08 Score=91.84 Aligned_cols=103 Identities=15% Similarity=0.096 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA 538 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~--~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~ 538 (573)
.....+..+|..+++.|++++|++.|+++++ ..|.+..++.++|.+|.++|++++|+..++++++++|++ ..++.++
T Consensus 103 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 182 (252)
T 2ho1_A 103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMA 182 (252)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 4477889999999999999999999999999 889999999999999999999999999999999999997 4788889
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 539 QQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 539 ~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
.++..++.+++|++.|+...+..|..
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGGGQN 208 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 99999999999999999999888753
No 129
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.74 E-value=3.8e-08 Score=94.73 Aligned_cols=102 Identities=9% Similarity=-0.048 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICA 536 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~ 536 (573)
.....+..+|..+++.|+|++|++.|+++++ .|.+ ..+|.++|.+|..+|++++|+..|+++++++|++ ..+..
T Consensus 35 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 113 (272)
T 3u4t_A 35 NSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQ 113 (272)
T ss_dssp CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHH
Confidence 3455789999999999999999999999999 4443 5569999999999999999999999999999998 58888
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 537 EAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 537 ~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
++.++..++.+++|++.|+++..++|..
T Consensus 114 l~~~~~~~~~~~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 114 IGSYFYNKGNFPLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred HHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence 9999999999999999999999998754
No 130
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.72 E-value=9.5e-08 Score=88.68 Aligned_cols=102 Identities=15% Similarity=0.071 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHH
Q 008244 461 KQSAEIAKEKGNQAYKD-KQWLKAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICA 536 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~-~~~~~Ai~~y~~ai~--~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~ 536 (573)
+.....+..+|..+++. |++++|+..|+++++ ..|.+..+|.++|.+|..+|++++|+..++++++++|++ ..++.
T Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 152 (225)
T 2vq2_A 73 PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE 152 (225)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHH
Confidence 34567888999999999 999999999999999 667778999999999999999999999999999999987 47788
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCC
Q 008244 537 EAQQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 537 ~~~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
++.++...+.+++|++.|+......|
T Consensus 153 la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 153 LARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88999999999999999999888777
No 131
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.71 E-value=1.1e-07 Score=94.00 Aligned_cols=104 Identities=13% Similarity=-0.054 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ 539 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~ 539 (573)
|.....+..+|..+.+.|++++|+..|+++++..|++...+.++|.+|..+|++++|+..++++++++|++ ..++.++.
T Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~ 201 (330)
T 3hym_B 122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGV 201 (330)
T ss_dssp TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 34456677777777777777777777777777777777777777777777777777777777777777776 36666777
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCC
Q 008244 540 QERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
++...+.+++|++.|+++..+.+..
T Consensus 202 ~~~~~~~~~~A~~~~~~a~~~~~~~ 226 (330)
T 3hym_B 202 VAFQNGEWKTAEKWFLDALEKIKAI 226 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcccHHHHHHHHHHHHHHhhhc
Confidence 7777777777777777777765543
No 132
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.71 E-value=7.1e-08 Score=94.75 Aligned_cols=93 Identities=12% Similarity=0.044 Sum_probs=80.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHH-
Q 008244 472 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRR- 549 (573)
Q Consensus 472 ~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~- 549 (573)
+.+...|++++|+..|+++++.+|+++.+|+++|.||.++|++++|+..++++++++|++. +++.++.+...++...+
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEV 253 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 3344568999999999999999999999999999999999999999999999999999985 78888888888888765
Q ss_pred HHHHHhhccccCCCC
Q 008244 550 QLKIFHMHWSWSPPI 564 (573)
Q Consensus 550 al~~~~~~~~~~~~~ 564 (573)
+.+.+++..+++|..
T Consensus 254 a~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 254 TNRYLSQLKDAHRSH 268 (291)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCC
Confidence 567888888888853
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.70 E-value=2.4e-07 Score=76.94 Aligned_cols=81 Identities=28% Similarity=0.382 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~ 540 (573)
.....+...|..+++.|++++|+..|+++++.+|++...+.++|.+|..+|++++|+..++++++++|++. ....++.+
T Consensus 41 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 41 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44678899999999999999999999999999999999999999999999999999999999999999984 55555554
Q ss_pred HH
Q 008244 541 ER 542 (573)
Q Consensus 541 ~~ 542 (573)
+.
T Consensus 121 ~~ 122 (125)
T 1na0_A 121 KQ 122 (125)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 134
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.70 E-value=9e-08 Score=94.50 Aligned_cols=106 Identities=14% Similarity=-0.008 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~ 540 (573)
.....+..+|..+++.|+|++|+..|+++++.+|++..+|.++|.+|..+|++++|+..++++++++|++ ..++.++.+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999999999999999999999999988 478888999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCC
Q 008244 541 ERCLDITRRQLKIFHMHWSWSPPIKEH 567 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~~~~~~~~~~~ 567 (573)
+...+.+++|++.|++.....|...+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~ 125 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQL 125 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHH
Confidence 999999999999999999988865543
No 135
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.68 E-value=1.5e-07 Score=78.99 Aligned_cols=84 Identities=14% Similarity=0.222 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLI 534 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~-------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~ 534 (573)
.....+..+|..+++.|+|++|+..|+++++..|++ ..+|+++|.+|..+|++++|+..++++++++|+....
T Consensus 36 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 115 (131)
T 1elr_A 36 TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL 115 (131)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHH
Confidence 457889999999999999999999999999999887 9999999999999999999999999999999975555
Q ss_pred HHHHHHHHHHH
Q 008244 535 CAEAQQERCLD 545 (573)
Q Consensus 535 ~~~~~~~~~~~ 545 (573)
...+.+...++
T Consensus 116 ~~l~~~~~~~~ 126 (131)
T 1elr_A 116 KKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 136
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.66 E-value=2.8e-07 Score=75.23 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~-------p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
+...+.+|..++++++|.+|+..|++|++.. .....++.++|.||+++|++++|+..++++++++|++.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 5678899999999999999999999999874 34589999999999999999999999999999999985
No 137
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.62 E-value=3.2e-07 Score=91.61 Aligned_cols=98 Identities=15% Similarity=0.133 Sum_probs=91.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHH
Q 008244 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDI 546 (573)
Q Consensus 468 ~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~ 546 (573)
..+|..+++.|++++|++.|+++++.+|++..++.++|.+|..+|++++|+..++++++++|++. .++.++.++...+.
T Consensus 124 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 124 RSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34489999999999999999999999999999999999999999999999999999999999984 88888999999999
Q ss_pred HHHHHHHHhhccccCCCCC
Q 008244 547 TRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 547 ~~~al~~~~~~~~~~~~~~ 565 (573)
+++|++.|+.+.+..|...
T Consensus 204 ~~~A~~~~~~a~~~~~~~~ 222 (359)
T 3ieg_A 204 HELSLSEVRECLKLDQDHK 222 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhhCccch
Confidence 9999999999999888643
No 138
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.61 E-value=1.7e-07 Score=76.33 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCc
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLES-GSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~--~~~~~~n~a~~~~~l-~~~~~Al~~~~~al~l~p~~ 531 (573)
.....+..+|..+++.|+|++|++.|+++++++|+ +..+|.++|.+|.++ |++++|++.++++++.+|..
T Consensus 38 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 38 EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 34678899999999999999999999999999999 999999999999999 99999999999999999864
No 139
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.61 E-value=1.9e-07 Score=91.40 Aligned_cols=98 Identities=8% Similarity=-0.064 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---RLICAEA 538 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---~~~~~~~ 538 (573)
+....+...+..+.+.+++++|+..|+++++.+|++..+++++|.+|...|++++|+..|+++++++|++ .++..++
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 3455566677777888888888999999999999999999999999999999999999999999999997 3788889
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 008244 539 QQERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 539 ~~~~~~~~~~~al~~~~~~~~ 559 (573)
.++..++..+++...|.+++.
T Consensus 263 ~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 263 EILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHHHHHH
Confidence 999999988889888887653
No 140
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.60 E-value=3.5e-07 Score=94.97 Aligned_cols=103 Identities=12% Similarity=0.006 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH----H---
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR----L--- 533 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~----~--- 533 (573)
|..+..+..+|..+++.|++++|+..|+++++.+|++..+|.++|.+|.++|++++|+..|+++++++|++. .
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 136 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 356889999999999999999999999999999999999999999999999999999999999999999864 2
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 534 ---------ICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 534 ---------~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
.+.++..+...+.+++|++.|+......|.
T Consensus 137 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 175 (450)
T 2y4t_A 137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW 175 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 233466677778999999999998888775
No 141
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.59 E-value=2.8e-07 Score=99.10 Aligned_cols=104 Identities=7% Similarity=0.014 Sum_probs=96.8
Q ss_pred ChHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHh
Q 008244 460 QKQSAEIAKEKGNQAYKDKQ----------WLKAISFYTEAIKLNGNNATYYSNRAAAYLESG--SFLQAEADCTKAINL 527 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~----------~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~--~~~~Al~~~~~al~l 527 (573)
+|+....|..++..+.+.++ |++|++.|+++|+.+|++..+|++|+.++.+++ ++++++++|++++++
T Consensus 59 nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~ 138 (567)
T 1dce_A 59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA 138 (567)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence 56889999999999999988 999999999999999999999999999999999 779999999999999
Q ss_pred CcCc-HHHHHHHHHHHHHH-HHHHHHHHHhhccccCCC
Q 008244 528 DKKV-RLICAEAQQERCLD-ITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 528 ~p~~-~~~~~~~~~~~~~~-~~~~al~~~~~~~~~~~~ 563 (573)
||++ .++..++.+...++ .++++++.+++....+|.
T Consensus 139 d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~ 176 (567)
T 1dce_A 139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 176 (567)
T ss_dssp CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
Confidence 9998 48888888888888 899999999999998875
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.59 E-value=4.2e-07 Score=97.69 Aligned_cols=122 Identities=9% Similarity=0.004 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 008244 434 VQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLES 511 (573)
Q Consensus 434 a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l 511 (573)
...+++.+..........+ +....|..++..+.+.+ +|++|++.|+++|+++|.+..+|++|+.++.++
T Consensus 86 ~~~~~~eL~~~~~~l~~~p---------K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l 156 (567)
T 1dce_A 86 AALVKAELGFLESCLRVNP---------KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA 156 (567)
T ss_dssp HHHHHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 3446666666666655444 88999999999999999 779999999999999999999999999999999
Q ss_pred C-CHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHH--------------HHHHHHHHHHhhccccCCCC
Q 008244 512 G-SFLQAEADCTKAINLDKKVR-LICAEAQQERCL--------------DITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 512 ~-~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~--------------~~~~~al~~~~~~~~~~~~~ 564 (573)
+ .+++++++++++++++|++. ++..++.+...+ +.++++++.++++..++|..
T Consensus 157 ~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~ 225 (567)
T 1dce_A 157 AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND 225 (567)
T ss_dssp CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCC
Confidence 9 99999999999999999985 777888777764 88999999999999999853
No 143
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.58 E-value=1.5e-07 Score=98.60 Aligned_cols=105 Identities=17% Similarity=0.093 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV- 531 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~---------~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~- 531 (573)
..+..+..+|.+++.+|+|++|+++|++|+++ +|.....|.|+|.+|..+|++++|+.++++++++.+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34677888999999999999999999999987 57778999999999999999999999999999986532
Q ss_pred --------HHHHHHHHHHHH--HHHHHHHHHHHhhccccCCCCCC
Q 008244 532 --------RLICAEAQQERC--LDITRRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 532 --------~~~~~~~~~~~~--~~~~~~al~~~~~~~~~~~~~~~ 566 (573)
..+..++..... .+.+++|++.|+++..++|...+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~ 173 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE 173 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence 245555544443 36899999999999999986543
No 144
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.57 E-value=4.3e-07 Score=89.02 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI---KLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINLDKK---- 530 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai---~~~p~~~----~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~---- 530 (573)
..+..+.+.|..++..|+|++|+..|++++ +..+++. .+|+|+|.+|.++|+|++|+..+++++++.++
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 457889999999999999999999999999 4556643 79999999999999999999999999998754
Q ss_pred ---cHHHHHHHHHHHHHHHHHHH-HHHHhhcccc
Q 008244 531 ---VRLICAEAQQERCLDITRRQ-LKIFHMHWSW 560 (573)
Q Consensus 531 ---~~~~~~~~~~~~~~~~~~~a-l~~~~~~~~~ 560 (573)
...++.+|.++..++.+++| ...|+++..+
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 24778889999988888888 6667776654
No 145
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.57 E-value=1.4e-07 Score=93.33 Aligned_cols=102 Identities=16% Similarity=0.110 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---- 531 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---- 531 (573)
..+..+.++|..+.+ |+|++|+++|++++++.+.. ..+|.++|.+|.++|+|++|+..|++++++.|++
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 192 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP 192 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh
Confidence 457888999999988 99999999999999998754 6889999999999999999999999999997653
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244 532 ---RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 532 ---~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
..++.++.++..++.+++|++.|+++. +.|...
T Consensus 193 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 193 TCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 256667788888899999999999999 888544
No 146
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.56 E-value=2.4e-07 Score=98.58 Aligned_cols=105 Identities=13% Similarity=0.052 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQ 540 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~ 540 (573)
+.+..+..+|..+.+.|+|++|++.|+++++++|++..+|.++|.+|..+|++++|+..++++++++|++ ..++.++.+
T Consensus 308 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 387 (537)
T 3fp2_A 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEI 387 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 4577889999999999999999999999999999999999999999999999999999999999999987 477888899
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCC
Q 008244 541 ERCLDITRRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~~~~~~~~~~ 566 (573)
+...+.+++|++.|+++..+.|...+
T Consensus 388 ~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 98899999999999998887765433
No 147
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.55 E-value=4e-07 Score=89.35 Aligned_cols=105 Identities=9% Similarity=-0.122 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRA--AAYLESGSFLQAEADCTKAINLDKKVR-LICAEA 538 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a--~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~ 538 (573)
.....+..+|..+.+.|++++|++.|+++++.+|++.......+ ..+...|++++|+..|+++++.+|++. .++.++
T Consensus 128 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la 207 (291)
T 3mkr_A 128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA 207 (291)
T ss_dssp CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 55778999999999999999999999999999999864433333 222334899999999999999999985 778899
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCC
Q 008244 539 QQERCLDITRRQLKIFHMHWSWSPPIKE 566 (573)
Q Consensus 539 ~~~~~~~~~~~al~~~~~~~~~~~~~~~ 566 (573)
.++..++++++|.+.|+++...+|...+
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999986543
No 148
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.55 E-value=3.9e-07 Score=98.42 Aligned_cols=104 Identities=19% Similarity=0.161 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------NGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RL 533 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~------~p~~-~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~ 533 (573)
..+..+..+|..+.+.|++++|++.|++++++ +|++ ..+|.+++.+|.+.|++++|++.++++++++|++ ..
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 34677888999999999999999999999888 5554 7889999999999999999999999999999877 47
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244 534 ICAEAQQERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 534 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
+..++.++...+.+++|.+.|+++.+++|...
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence 77888888888999999999999988888644
No 149
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.54 E-value=3.7e-07 Score=82.10 Aligned_cols=84 Identities=8% Similarity=-0.031 Sum_probs=74.7
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HHHHHHHHHHHHHHHHHHHHH
Q 008244 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---RLICAEAQQERCLDITRRQLK 552 (573)
Q Consensus 476 ~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~al~ 552 (573)
+.++..+|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++ .++..++.++..++..+++..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 33444568999999999999999999999999999999999999999999999985 378888999999999999999
Q ss_pred HHhhccc
Q 008244 553 IFHMHWS 559 (573)
Q Consensus 553 ~~~~~~~ 559 (573)
.|.+++.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
No 150
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.54 E-value=6.3e-07 Score=88.57 Aligned_cols=102 Identities=13% Similarity=0.050 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYK-------DKQW-------LKAISFYTEAIK-LNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~-------~~~~-------~~Ai~~y~~ai~-~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~ 526 (573)
..+..|.+.|..+.+ .|++ ++|+..|++||+ ++|++..+|.+++.++.++|++++|...|+++++
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 127 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 456677777766653 4664 778888888887 6788888888888888888888888888888888
Q ss_pred hCcCcH--HHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 527 LDKKVR--LICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 527 l~p~~~--~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
++|++. .+...+..+...+.+++|.+.|+++.+.+|.
T Consensus 128 ~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 166 (308)
T 2ond_A 128 IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART 166 (308)
T ss_dssp SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC
T ss_pred ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence 877752 5666777777777777788888777777664
No 151
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.53 E-value=2e-07 Score=89.58 Aligned_cols=102 Identities=13% Similarity=0.056 Sum_probs=91.6
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--- 527 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~--------~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l--- 527 (573)
..+..+..+.++|..+...|+|++|++.|.+++++ +|....+|.++|.+|..+|++++|+..+++++++
T Consensus 80 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34677889999999999999999999999999998 4667899999999999999999999999999999
Q ss_pred -----CcCc-HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244 528 -----DKKV-RLICAEAQQERCLDITRRQLKIFHMHWSW 560 (573)
Q Consensus 528 -----~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~ 560 (573)
+|.. ..+..++.++..++.+++|++.|+.+..+
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5554 47788899999999999999999988875
No 152
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.53 E-value=3.2e-07 Score=88.20 Aligned_cols=101 Identities=14% Similarity=0.153 Sum_probs=90.3
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINL---- 527 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~--------p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l---- 527 (573)
.+..+..+..+|..++..|+|++|+..|++++++. |....++.++|.+|..+|++++|+..|++++++
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999884 556889999999999999999999999999998
Q ss_pred ----CcCc-HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244 528 ----DKKV-RLICAEAQQERCLDITRRQLKIFHMHWSW 560 (573)
Q Consensus 528 ----~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~ 560 (573)
+|.. ..+..++.++..++.+++|++.|+++..+
T Consensus 119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444 47788899999999999999999988876
No 153
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.52 E-value=2.5e-07 Score=90.79 Aligned_cols=101 Identities=15% Similarity=0.114 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV--- 531 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~-------p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~--- 531 (573)
..+..+.++|..+...|+|++|+.+|+++++.. +....+|+|+|.+|.++|+|++|+..+++++++.++.
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 457789999999999999999999999999632 2235799999999999999999999999999987553
Q ss_pred ----HHHHHHHHHHHHHH-HHHHHHHHHhhccccCC
Q 008244 532 ----RLICAEAQQERCLD-ITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 532 ----~~~~~~~~~~~~~~-~~~~al~~~~~~~~~~~ 562 (573)
..++.+|.++..++ .+++|++.|+++..+..
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 47888899998888 46899999988876544
No 154
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.52 E-value=3.4e-07 Score=79.76 Aligned_cols=103 Identities=13% Similarity=0.082 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV--- 531 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~--- 531 (573)
...+..+..+|..++..|+|++|++.|++++++.+.. ..++.++|.+|..+|++++|+..+++++++.+..
T Consensus 46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 125 (164)
T 3ro3_A 46 AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 125 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch
Confidence 3446788999999999999999999999999986543 6789999999999999999999999999885432
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 532 ----RLICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 532 ----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
..+..++.++..++.+++|.+.|+++.++...
T Consensus 126 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 126 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 36777888888899999999999988876543
No 155
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.51 E-value=3.4e-07 Score=72.90 Aligned_cols=72 Identities=15% Similarity=0.038 Sum_probs=66.7
Q ss_pred ChHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 460 QKQSAEIAKEKGNQAYKDKQ---WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~---~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
+|++++.+...|..++..++ ..+|...++++|+++|+++.+++.+|..+++.|+|++|+..++++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 45678999999999976655 7999999999999999999999999999999999999999999999999984
No 156
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.50 E-value=7.1e-07 Score=88.19 Aligned_cols=101 Identities=12% Similarity=0.043 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT-YYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQ 539 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~-~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~ 539 (573)
+....|.+.|..+.+.|++++|+..|+++|+++|+++. +|.+++.++.+.|++++|+..|++|++++|.. ..+...+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 176 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 176 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 44556666777777777777777777777777776665 67777776666666666666666666666554 22222222
Q ss_pred HHHH-HHHHHHHHHHHhhccccCC
Q 008244 540 QERC-LDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 540 ~~~~-~~~~~~al~~~~~~~~~~~ 562 (573)
.... .+.+++|.+.|+++.+..|
T Consensus 177 ~~~~~~~~~~~A~~~~~~al~~~p 200 (308)
T 2ond_A 177 MEYYCSKDKSVAFKIFELGLKKYG 200 (308)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Confidence 2211 2445555555555554444
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.49 E-value=3e-06 Score=83.87 Aligned_cols=104 Identities=9% Similarity=0.033 Sum_probs=94.7
Q ss_pred ChHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcH-HHH
Q 008244 460 QKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKVR-LIC 535 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~--~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~-~~~Al~~~~~al~l~p~~~-~~~ 535 (573)
+|+....|..++..+.+.+ ++++++++++++|+++|.|..+|++|+.++..++. +++++++++++++++|.+. +..
T Consensus 104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~ 183 (331)
T 3dss_A 104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 183 (331)
T ss_dssp CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 3488999999999999988 49999999999999999999999999999999999 6999999999999999985 777
Q ss_pred HHHHHHHHH--------------HHHHHHHHHHhhccccCCC
Q 008244 536 AEAQQERCL--------------DITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 536 ~~~~~~~~~--------------~~~~~al~~~~~~~~~~~~ 563 (573)
.++.+...+ +.++++++.++.+...+|.
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~ 225 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN 225 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC
Confidence 777777666 7899999999999998885
No 158
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.49 E-value=1.7e-07 Score=75.85 Aligned_cols=71 Identities=11% Similarity=-0.025 Sum_probs=64.0
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 493 ~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
.+|+++.+|+++|.+|+++|+|++|+..|+++++++|++ .+++.++.++..++.+++|++.|+++..+.|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 479999999999999999999999999999999999998 58899999999999999999999999887653
No 159
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.48 E-value=6.5e-07 Score=88.05 Aligned_cols=104 Identities=10% Similarity=-0.058 Sum_probs=91.8
Q ss_pred ChHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhCcC
Q 008244 460 QKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAY----LES---GSFLQAEADCTKAINLDKK 530 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~--~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~----~~l---~~~~~Al~~~~~al~l~p~ 530 (573)
+|+....|+.++..+...+ +++++++.++++|+.+|++..+|+.|+.++ .++ +++++++..|+++++++|+
T Consensus 63 nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk 142 (306)
T 3dra_A 63 LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK 142 (306)
T ss_dssp CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC
Confidence 3478999999999999998 999999999999999999999999999999 777 7899999999999999999
Q ss_pred cH-HHHHHHHHHHHHHHHH--HHHHHHhhccccCCC
Q 008244 531 VR-LICAEAQQERCLDITR--RQLKIFHMHWSWSPP 563 (573)
Q Consensus 531 ~~-~~~~~~~~~~~~~~~~--~al~~~~~~~~~~~~ 563 (573)
+. +...++-+...++.++ ++++.+++....+|.
T Consensus 143 ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~ 178 (306)
T 3dra_A 143 NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK 178 (306)
T ss_dssp CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC
Confidence 84 7788888777777777 888888888877763
No 160
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.48 E-value=1.2e-06 Score=94.51 Aligned_cols=99 Identities=12% Similarity=-0.016 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQER 542 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~ 542 (573)
...+..+|..+.+.|++++|++.|+++++++|++..+|++++.+|.+.|++++|++.|+++++++|++ ..+..++..+.
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 34444444455555555555555555555545444445555555555555555555555554444443 23334444444
Q ss_pred HHHHHHHHHHHHhhccccCC
Q 008244 543 CLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 543 ~~~~~~~al~~~~~~~~~~~ 562 (573)
..+.+++|++.|++.....|
T Consensus 453 ~~g~~~~A~~~~~~~~~~~~ 472 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYALFQ 472 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 44444444444444444433
No 161
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.47 E-value=2.2e-06 Score=76.73 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 462 QSAEIAKEKGNQ-AYKDKQW--LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 462 ~~~~~~~~~g~~-~~~~~~~--~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
.....+..+|.. +++.|++ ++|+..|+++++++|++..+|+++|.+|+.+|++++|+..++++++++|++.
T Consensus 76 ~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 347788999999 7899999 9999999999999999999999999999999999999999999999999873
No 162
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.44 E-value=1.1e-06 Score=86.39 Aligned_cols=103 Identities=10% Similarity=-0.063 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCcCc
Q 008244 461 KQSAEIAKEKGNQA----YKD---KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL--QAEADCTKAINLDKKV 531 (573)
Q Consensus 461 ~~~~~~~~~~g~~~----~~~---~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~--~Al~~~~~al~l~p~~ 531 (573)
|+....|..++..+ .+. ++++++++.++++|+.+|.+..+|++|+.++.++++++ ++++.+++++++||.|
T Consensus 100 Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N 179 (306)
T 3dra_A 100 EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN 179 (306)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC
T ss_pred cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC
Confidence 47788999999888 666 78999999999999999999999999999999999998 9999999999999988
Q ss_pred H-HHHHHHHHHHHHHH------HHHHHHHHhhccccCCC
Q 008244 532 R-LICAEAQQERCLDI------TRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 532 ~-~~~~~~~~~~~~~~------~~~al~~~~~~~~~~~~ 563 (573)
. +...++.+...++. ++++++.++.+...+|.
T Consensus 180 ~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~ 218 (306)
T 3dra_A 180 NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ 218 (306)
T ss_dssp HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC
Confidence 4 77777777776655 89999999988888874
No 163
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.43 E-value=4e-07 Score=79.29 Aligned_cols=102 Identities=16% Similarity=0.155 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV--- 531 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~--- 531 (573)
...+..+..+|..++..|+|++|+..|++++++.+.. ..++.++|.+|..+|++++|+..+++++++.++.
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 4567889999999999999999999999999986542 3689999999999999999999999999986542
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244 532 ----RLICAEAQQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 532 ----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
..++.++.++...+.+++|++.|+++..+.+
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3677788888888999999999988876543
No 164
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.43 E-value=1.1e-06 Score=84.81 Aligned_cols=130 Identities=16% Similarity=0.071 Sum_probs=97.9
Q ss_pred cCCcHHHHHHHHHHHHHHHHH-HHhhhhcCCCCCCccChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCH
Q 008244 424 HGGDRFLLDTVQNMYASLQEQ-ADIATKSKLSTNTFNQKQSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNA 498 (573)
Q Consensus 424 ~~~d~~ll~~a~~le~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~Ai~~y~~ai~~~p~~~ 498 (573)
+++...++.++..+.....-. +......... +..+..+.++|..+.+ .+++++|+..|+++++.+ ++
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~ 74 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YS 74 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CH
Confidence 344455666666655432222 2222222211 3446788899999999 999999999999999885 89
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH----HHHHHHHHHHHhhccccCC
Q 008244 499 TYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKVRLICAEAQQERC----LDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 499 ~~~~n~a~~~~~----l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~----~~~~~~al~~~~~~~~~~~ 562 (573)
.+++++|.+|.. .+++++|+..|+++++++ +..+++.++.++.. .+.+++|++.|+++....+
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 145 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND 145 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc
Confidence 999999999999 999999999999999985 34588888988888 8999999999999887654
No 165
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.42 E-value=8e-07 Score=91.10 Aligned_cols=102 Identities=12% Similarity=0.124 Sum_probs=90.7
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------Cc
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINL------DK 529 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~----~~~~n~a~~~~~l~~~~~Al~~~~~al~l------~p 529 (573)
++..+..+..+|..+++.|+|++|+..|+++++++|++. .+|+++|.+|..+|++++|+..|++++++ +|
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 467788899999999999999999999999999999986 68999999999999999999999999998 34
Q ss_pred Cc-HHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008244 530 KV-RLICAEAQQERCLDITRRQLKIFHMHWSWS 561 (573)
Q Consensus 530 ~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 561 (573)
.. ..++.++.++..++.+++|++.|+++..+.
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 156 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA 156 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 33 477888899998999999999999887663
No 166
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.41 E-value=5.7e-07 Score=87.92 Aligned_cols=103 Identities=16% Similarity=0.120 Sum_probs=91.7
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--- 528 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~--------~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~--- 528 (573)
.+.....+..+|..+++.|++++|++.|++++++ .|....++.++|.+|..+|++++|+..+++++++.
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 228 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4577889999999999999999999999999998 66778999999999999999999999999999863
Q ss_pred ----------------------------------------------cCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008244 529 ----------------------------------------------KKV-RLICAEAQQERCLDITRRQLKIFHMHWSWS 561 (573)
Q Consensus 529 ----------------------------------------------p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 561 (573)
|.. ..++.++.++..++.+++|++.|+++.++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp HHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 322 367788999999999999999999998876
Q ss_pred C
Q 008244 562 P 562 (573)
Q Consensus 562 ~ 562 (573)
|
T Consensus 309 ~ 309 (311)
T 3nf1_A 309 K 309 (311)
T ss_dssp C
T ss_pred h
Confidence 5
No 167
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.41 E-value=8e-07 Score=93.00 Aligned_cols=106 Identities=10% Similarity=0.002 Sum_probs=86.5
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhC
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESG--SFLQAEADCTKAINLD 528 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~--------p~~~~~~~n~a~~~~~l~--~~~~Al~~~~~al~l~ 528 (573)
.++..+..+.++|.+|+..|+|++|+..|++++++. +..+..+.++|.++.+++ +|++|+.+|++|++++
T Consensus 89 ~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~ 168 (472)
T 4g1t_A 89 AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168 (472)
T ss_dssp CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC
Confidence 345668889999999999999999999999999874 356899999999998865 6999999999999999
Q ss_pred cCcH-HHHHHHHHHHHH---HHHHHHHHHHhhccccCCCC
Q 008244 529 KKVR-LICAEAQQERCL---DITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 529 p~~~-~~~~~~~~~~~~---~~~~~al~~~~~~~~~~~~~ 564 (573)
|++. .+..++.+...+ +..+++++.|.++.+++|..
T Consensus 169 p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 9985 555666555444 34467888888888888754
No 168
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.41 E-value=1.8e-06 Score=85.90 Aligned_cols=104 Identities=6% Similarity=-0.145 Sum_probs=93.8
Q ss_pred ChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhCcCcH-HHH
Q 008244 460 QKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-G-SFLQAEADCTKAINLDKKVR-LIC 535 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~-~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l-~-~~~~Al~~~~~al~l~p~~~-~~~ 535 (573)
+|+....|..++..+...+ +++++++.++++|+.+|++..+|+.|+.++.++ + +++++++.++++++++|++. +..
T Consensus 84 nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~ 163 (349)
T 3q7a_A 84 NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWA 163 (349)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHH
Confidence 4588999999999999999 599999999999999999999999999999998 8 99999999999999999984 777
Q ss_pred HHHHHHHHHHHHH--------HHHHHHhhccccCCC
Q 008244 536 AEAQQERCLDITR--------RQLKIFHMHWSWSPP 563 (573)
Q Consensus 536 ~~~~~~~~~~~~~--------~al~~~~~~~~~~~~ 563 (573)
.++-+...++.++ ++++.+++....+|.
T Consensus 164 ~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~ 199 (349)
T 3q7a_A 164 YLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR 199 (349)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC
Confidence 8887777777776 899998888887763
No 169
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.40 E-value=4.1e-07 Score=87.67 Aligned_cols=104 Identities=14% Similarity=0.050 Sum_probs=91.3
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC-c-H
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTKAINLD--KK-V-R 532 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~--~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~--p~-~-~ 532 (573)
..|... .++.+|..+++.++|++|+..|+++++..+.. ..+++++|.++..+|++++|+..|++++..+ |. . .
T Consensus 131 ~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~d 209 (282)
T 4f3v_A 131 AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARA 209 (282)
T ss_dssp TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHH
T ss_pred cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHH
Confidence 445667 88999999999999999999999887764222 4689999999999999999999999999665 66 3 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 533 LICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 533 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
+.+.++.++..+++.++|...|++....+|.
T Consensus 210 a~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 210 IAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 8899999999999999999999999999986
No 170
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.39 E-value=1.1e-06 Score=80.14 Aligned_cols=104 Identities=10% Similarity=0.027 Sum_probs=86.1
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---NGN----NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~---~p~----~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
..+..+..+.++|..+...|+|++|++.|++++++ .++ ...+++++|.+|..+|++++|+..+++++++.+..
T Consensus 61 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 140 (203)
T 3gw4_A 61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA 140 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 34567888999999999999999999999999988 442 35789999999999999999999999999875332
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244 532 -------RLICAEAQQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 532 -------~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
..+..++.++...+++++|.+.|+++..+..
T Consensus 141 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 2456778888888999999999888776543
No 171
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.39 E-value=7e-07 Score=94.19 Aligned_cols=104 Identities=16% Similarity=0.150 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCcCcH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT------YYSNRAAAYLE---SGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~------~~~n~a~~~~~---l~~~~~Al~~~~~al~l~p~~~ 532 (573)
.....+..+|..+++.|++++|+..|+++++.+|++.. +|+++|.+|.. +|++++|+..|+++++++|++.
T Consensus 370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 449 (514)
T 2gw1_A 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE 449 (514)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccH
Confidence 34567888999999999999999999999999888754 99999999999 9999999999999999999874
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244 533 -LICAEAQQERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 533 -~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
.++.++.++...+.+++|++.|+++..++|...
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 778888999989999999999999998888543
No 172
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.39 E-value=7.8e-07 Score=90.65 Aligned_cols=102 Identities=14% Similarity=0.096 Sum_probs=88.5
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~-------~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
..+..+..+..+|..++..|++++|+..|++|+++.+. ...++.++|.+|..+|+|++|+..+++|+++.++.
T Consensus 138 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 217 (383)
T 3ulq_A 138 DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE 217 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Confidence 34567889999999999999999999999999998543 35789999999999999999999999999986543
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244 532 -------RLICAEAQQERCLDITRRQLKIFHMHWSW 560 (573)
Q Consensus 532 -------~~~~~~~~~~~~~~~~~~al~~~~~~~~~ 560 (573)
..+..+|.++..++.+++|++.|+++..+
T Consensus 218 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 218 KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 37788899999999999999999988874
No 173
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.38 E-value=3.2e-06 Score=72.85 Aligned_cols=70 Identities=13% Similarity=0.037 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 463 SAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLN-G-NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~---~~~~Ai~~y~~ai~~~-p-~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
..+..++.|..+.+.+ +++++|..+++.++.+ | ++.+++|++|..|+++++|++|+++++++|+++|++.
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 4788999999999988 7789999999999998 7 5789999999999999999999999999999999985
No 174
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.36 E-value=1.3e-06 Score=85.28 Aligned_cols=108 Identities=10% Similarity=0.024 Sum_probs=93.8
Q ss_pred CCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008244 453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (573)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~--------~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~a 524 (573)
......++|..+..+..+|..++..|+|++|+..|++++++ .|....++.++|.+|..+|++++|+..++++
T Consensus 16 ~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 95 (311)
T 3nf1_A 16 FQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDA 95 (311)
T ss_dssp CSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34455667889999999999999999999999999999995 5667899999999999999999999999999
Q ss_pred HHhC--------cCc-HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244 525 INLD--------KKV-RLICAEAQQERCLDITRRQLKIFHMHWSW 560 (573)
Q Consensus 525 l~l~--------p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~ 560 (573)
+++. |.. ..+..++.++..++.+++|++.|+++..+
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 140 (311)
T 3nf1_A 96 LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 140 (311)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 9983 333 47778888888889999999999988765
No 175
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.35 E-value=1.2e-06 Score=80.00 Aligned_cols=100 Identities=6% Similarity=-0.098 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCc-
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL---DKKV- 531 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~------~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l---~p~~- 531 (573)
..+..+..+|..++..|+|++|+..|++++++ .+....++.++|.+|..+|++++|+..+++++++ .++.
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 56889999999999999999999999999994 4456789999999999999999999999999998 3422
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008244 532 ----RLICAEAQQERCLDITRRQLKIFHMHWSWS 561 (573)
Q Consensus 532 ----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 561 (573)
..++.++.++..++.+++|++.|+.+..+.
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 367778888988999999999999887653
No 176
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.35 E-value=4.5e-07 Score=89.59 Aligned_cols=102 Identities=10% Similarity=-0.047 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV--- 531 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~------~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~--- 531 (573)
...+..+.+.|..+.+.|+|++|+.+|++++++.+. ...+|.++|.+|.. |++++|+.+|++|+++.|..
T Consensus 73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~ 151 (307)
T 2ifu_A 73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL 151 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence 355788999999999999999999999999998543 25789999999999 99999999999999998753
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 532 ----RLICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 532 ----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
..+...+.++..++++++|++.|+++..+.+.
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 36777889999999999999999999887553
No 177
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.34 E-value=2.1e-06 Score=82.76 Aligned_cols=97 Identities=18% Similarity=0.152 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHH
Q 008244 463 SAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKVRLI 534 (573)
Q Consensus 463 ~~~~~~~~g~~~~~----~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~----l~~~~~Al~~~~~al~l~p~~~~~ 534 (573)
.+..+.++|..+.+ .+++++|++.|+++++.+ ++.+++++|.+|.. .+++++|+..|+++++++ +..++
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~ 149 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-DGDGC 149 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHH
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-cHHHH
Confidence 46778889999999 999999999999999884 89999999999999 999999999999999987 33577
Q ss_pred HHHHHHHHH----HHHHHHHHHHHhhccccCC
Q 008244 535 CAEAQQERC----LDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 535 ~~~~~~~~~----~~~~~~al~~~~~~~~~~~ 562 (573)
+.++.++.. .+.+++|++.|+++.+..+
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 181 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLKD 181 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 778888887 7899999999998887643
No 178
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.31 E-value=5.8e-06 Score=80.87 Aligned_cols=101 Identities=10% Similarity=-0.068 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCc-
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAIN---LDKKV- 531 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~---l~p~~- 531 (573)
.....+...|..+...|+|++|+..|++++++.+.. ..+|+++|.+|..+|+|++|+..|++|++ ..|+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~ 192 (293)
T 2qfc_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc
Confidence 445666778999999999999999999999876544 67999999999999999999999999994 45553
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244 532 ----RLICAEAQQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 532 ----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
..++..+.++..++.+++|++.|+++..+.+
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4778889999999999999999999887654
No 179
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.31 E-value=1.6e-06 Score=88.38 Aligned_cols=103 Identities=13% Similarity=0.041 Sum_probs=89.8
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINL-----D 528 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l-----~ 528 (573)
.+..+..+.++|..+...|+|++|++.|++++++.+.. ..+++|+|.+|..+|++++|+.++++++++ +
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 45668899999999999999999999999999886543 369999999999999999999999999994 5
Q ss_pred -cCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244 529 -KKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 529 -p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
|.. ..++.++.++..++.+++|++.|+++..+.+
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 554 4788889999999999999999998887643
No 180
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.30 E-value=1.8e-06 Score=85.03 Aligned_cols=102 Identities=15% Similarity=0.182 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------Cc-
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDK------KV- 531 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p------~~- 531 (573)
.+..+...|..+++.|+|++|+..|+++++.+|++ ..+|.++|.+|..+|++++|+..+++++++.. ..
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 46678889999999999999999999999999998 57899999999999999999999999998842 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 532 RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
..+..++.++...+.+++|++.|+++..+.+..
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 116 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 116 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 477778888888899999999999888765543
No 181
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.30 E-value=4.9e-06 Score=82.32 Aligned_cols=106 Identities=7% Similarity=-0.005 Sum_probs=93.4
Q ss_pred ccChHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHH
Q 008244 458 FNQKQSAEIAKEKGNQAYKDKQ----------WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS--FLQAEADCTKAI 525 (573)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~----------~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~--~~~Al~~~~~al 525 (573)
..+|+....|+.++..+...++ +++++..++++|+.+|.+..+|++|+.++.++++ +++++..|++++
T Consensus 58 ~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l 137 (331)
T 3dss_A 58 GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFL 137 (331)
T ss_dssp TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHH
Confidence 3467889999999999987766 7999999999999999999999999999999994 999999999999
Q ss_pred HhCcCcH-HHHHHHHHHHHHHH-HHHHHHHHhhccccCCC
Q 008244 526 NLDKKVR-LICAEAQQERCLDI-TRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 526 ~l~p~~~-~~~~~~~~~~~~~~-~~~al~~~~~~~~~~~~ 563 (573)
+++|.|. +...++.+...++. ++++++.+......+|.
T Consensus 138 ~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~ 177 (331)
T 3dss_A 138 EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 177 (331)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred HhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC
Confidence 9999984 77788877777776 68899999888887774
No 182
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.28 E-value=2.4e-06 Score=83.96 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV--- 531 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~--- 531 (573)
...+..+..+|..+.+.|++++|++.|++++++.++. ..++.++|.+|..+|++++|+..+++++++.+..
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 3456789999999999999999999999999987765 7899999999999999999999999999987653
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 532 ----RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 532 ----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
..+..++.++..++.+++|.+.|+++..+.+..
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 377788999999999999999999999887654
No 183
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.25 E-value=3.2e-06 Score=85.92 Aligned_cols=104 Identities=14% Similarity=0.057 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCcC
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAIN-----LDKK 530 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~------~~~~~~n~a~~~~~l~~~~~Al~~~~~al~-----l~p~ 530 (573)
..+..+.++|..+...|+|++|++.|++++++.+. ...++.|+|.+|..+|++++|+..++++++ .+|.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 259 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence 56888999999999999999999999999997432 357899999999999999999999999999 5666
Q ss_pred c-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244 531 V-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 531 ~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
. ..++.++.++..++.+++|+..|+++..+.+...
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 295 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS 295 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 5 4788889999999999999999999998766433
No 184
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.22 E-value=2.9e-06 Score=86.37 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------Cc
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDK------KV 531 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p------~~ 531 (573)
..+..+..+|..+++.|+|++|+..|++++++.|++ ..+|.++|.+|+.+|++++|+..+++++++.+ ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 347788999999999999999999999999999998 47899999999999999999999999998842 22
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 532 -RLICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 532 -~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
..+..++.++..++.+++|++.|+++..+.+.
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 119 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 119 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 37778888888889999999999988876553
No 185
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.22 E-value=1.9e-06 Score=85.68 Aligned_cols=104 Identities=8% Similarity=-0.040 Sum_probs=92.8
Q ss_pred ChHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCc
Q 008244 460 QKQSAEIAKEKGNQAYKD-K-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL--------QAEADCTKAINLDK 529 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~-~-~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~--------~Al~~~~~al~l~p 529 (573)
+|+....|..++..+.+. + +++++++.++++|+.+|++..+|++|+.++.++++++ ++++.++++++++|
T Consensus 119 nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp 198 (349)
T 3q7a_A 119 NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG 198 (349)
T ss_dssp TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT
T ss_pred CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC
Confidence 348899999999999887 7 9999999999999999999999999999999999888 99999999999999
Q ss_pred CcH-HHHHHHHHHHHHHH-------HHHHHHHHhhccccCCC
Q 008244 530 KVR-LICAEAQQERCLDI-------TRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 530 ~~~-~~~~~~~~~~~~~~-------~~~al~~~~~~~~~~~~ 563 (573)
.|. +...++.+...++. ++++++.+.++...+|.
T Consensus 199 ~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~ 240 (349)
T 3q7a_A 199 RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH 240 (349)
T ss_dssp TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC
Confidence 984 77778777766653 78999999888888874
No 186
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.21 E-value=4.5e-06 Score=84.85 Aligned_cols=102 Identities=13% Similarity=0.095 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV--- 531 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~--- 531 (573)
...+..+.++|..++..|++++|+..|++++++.+.. ..++.++|.+|..+|++++|+..+++++++.+..
T Consensus 224 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 303 (406)
T 3sf4_A 224 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR 303 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc
Confidence 4557789999999999999999999999999987765 7899999999999999999999999999986543
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244 532 ----RLICAEAQQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 532 ----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
..+..++.++..++.+++|++.|+++..+.+
T Consensus 304 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 304 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3677788888889999999999998877644
No 187
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.20 E-value=6.4e-06 Score=84.26 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cC
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD------KK 530 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~------~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~------p~ 530 (573)
.+..+..+|..++..|+|++|+..|++++++ .+....+|.++|.+|..+|++++|+..|++++++. |.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 164 (411)
T 4a1s_A 85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS 164 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHH
Confidence 4578999999999999999999999999998 57778999999999999999999999999999984 33
Q ss_pred c-HHHHHHHHHHHHHHH-----------------HHHHHHHHhhccccC
Q 008244 531 V-RLICAEAQQERCLDI-----------------TRRQLKIFHMHWSWS 561 (573)
Q Consensus 531 ~-~~~~~~~~~~~~~~~-----------------~~~al~~~~~~~~~~ 561 (573)
. ..+..++.++..++. +++|++.|.++..+.
T Consensus 165 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 165 EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3 377788888888888 999999988876654
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.19 E-value=1.4e-05 Score=83.87 Aligned_cols=102 Identities=12% Similarity=0.013 Sum_probs=83.7
Q ss_pred CCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~-----~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
...++|..+..+.++|..|..+|+|++|+..|+++|++ .|++ +..++|+|.+|..+|+|++|+..|++|+++
T Consensus 343 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 343 FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 44567889999999999999999999999999999976 3444 689999999999999999999999999986
Q ss_pred C-----cCcH----HHHHHHHHHHHHHHHHHHHHHHhhc
Q 008244 528 D-----KKVR----LICAEAQQERCLDITRRQLKIFHMH 557 (573)
Q Consensus 528 ~-----p~~~----~~~~~~~~~~~~~~~~~al~~~~~~ 557 (573)
. |++. ..-.+++++..++.++++...|.++
T Consensus 423 ~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 423 LLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 5552 4445566666677777777777654
No 189
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.17 E-value=6.5e-06 Score=83.64 Aligned_cols=101 Identities=14% Similarity=0.048 Sum_probs=88.7
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKK- 530 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~-------~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~- 530 (573)
..+..+..+.++|..++..|++++|+..|++++++.+. .+.++.++|.+|..+|+|++|+..|++|+++.+.
T Consensus 136 ~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 215 (378)
T 3q15_A 136 DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI 215 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 34678899999999999999999999999999987543 2578999999999999999999999999998542
Q ss_pred ----c--HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244 531 ----V--RLICAEAQQERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 531 ----~--~~~~~~~~~~~~~~~~~~al~~~~~~~~ 559 (573)
. ..+..+|.++..++.+++|++.|+++..
T Consensus 216 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 3777889999999999999999998887
No 190
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.16 E-value=7e-06 Score=81.59 Aligned_cols=101 Identities=10% Similarity=0.027 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH--------------------------------
Q 008244 464 AEIAKEKGNQAYKD---KQWLKAISFYTEAIKLNGNNATYYSNRAAAY-------------------------------- 508 (573)
Q Consensus 464 ~~~~~~~g~~~~~~---~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~-------------------------------- 508 (573)
+-.++-+|..++.. .++.+|+.+|++||+++|+++.+|..++.||
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~ 275 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN 275 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence 55566677777665 4568999999999999999988887655555
Q ss_pred ------------HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 509 ------------LESGSFLQAEADCTKAINLDKKVRLICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 509 ------------~~l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
+..|++++|+..+++|+.++|+...+..++.++...|++++|...|+++..++|..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 34799999999999999999987788888999999999999999999999999964
No 191
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.15 E-value=4.2e-06 Score=81.88 Aligned_cols=101 Identities=10% Similarity=-0.057 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---Cc---
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDK---KV--- 531 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p---~~--- 531 (573)
...+...|..+...++|++|+..|++++++.+.. ..+|.++|.+|..+|+|++|+..|++++++-. .+
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF 194 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence 4455568999999999999999999999975432 45799999999999999999999999996421 22
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 532 --RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 532 --~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
..++..+.++..++.+++|++.|+++..+.+..
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 377888999999999999999999988876543
No 192
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.10 E-value=1.5e-05 Score=85.04 Aligned_cols=101 Identities=13% Similarity=0.053 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYK-------DKQWL-------KAISFYTEAIK-LNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~-------~~~~~-------~Ai~~y~~ai~-~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~ 526 (573)
..+..|.+.|..+.+ .|+++ +|+..|++|++ ++|++..+|.+++..+.++|++++|...|+++++
T Consensus 270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~ 349 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 349 (530)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 346677777777665 57765 77777777776 6777777777777777777777777777777777
Q ss_pred hCcCcH--HHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244 527 LDKKVR--LICAEAQQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 527 l~p~~~--~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
++|++. .+...+.++...+.+++|.+.|.++.+..|
T Consensus 350 ~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~ 387 (530)
T 2ooe_A 350 IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 387 (530)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 777652 556666666666777777777777776655
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.04 E-value=8.8e-06 Score=66.10 Aligned_cols=68 Identities=7% Similarity=0.036 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 497 ~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
++..|+++|.+++..|+|++|+..|+++++++|++ ..++.++.++..++.+++|++.|+++..++|..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 46789999999999999999999999999999998 488889999999999999999999999999865
No 194
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.02 E-value=2.6e-05 Score=72.27 Aligned_cols=99 Identities=8% Similarity=-0.075 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcH
Q 008244 463 SAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNG--NNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 463 ~~~~~~~~g~~~~~----~~~~~~Ai~~y~~ai~~~p--~~~~~~~n~a~~~~~----l~~~~~Al~~~~~al~l~p~~~ 532 (573)
.+..+.++|..+.. .+++++|++.|+++++..+ +++.+++++|.+|.. .+++++|+..|++++++..+..
T Consensus 84 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 163 (212)
T 3rjv_A 84 SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGY 163 (212)
T ss_dssp CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTH
T ss_pred CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHH
Confidence 47788999999988 8999999999999999988 459999999999999 8999999999999999944446
Q ss_pred HHHHHHHHHHHH-H-----HHHHHHHHHhhccccC
Q 008244 533 LICAEAQQERCL-D-----ITRRQLKIFHMHWSWS 561 (573)
Q Consensus 533 ~~~~~~~~~~~~-~-----~~~~al~~~~~~~~~~ 561 (573)
+.+.++.++..- + .+++|++.|+++....
T Consensus 164 a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 164 AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 788888877643 2 7899999999887654
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.01 E-value=1.3e-05 Score=84.04 Aligned_cols=98 Identities=7% Similarity=0.018 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cC
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-----GNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLD-----KK 530 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~-----p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~-----p~ 530 (573)
+....+.+..+..+|+|++|+..|+++|++. |++ ...+.|+|.+|..+|+|++|+..++++|++. |+
T Consensus 309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 388 (490)
T 3n71_A 309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 3445567777889999999999999999863 334 5899999999999999999999999999874 44
Q ss_pred c----HHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008244 531 V----RLICAEAQQERCLDITRRQLKIFHMHWSWS 561 (573)
Q Consensus 531 ~----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 561 (573)
+ ..+..+|.++..++.+++|...|++++.+.
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL 423 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4 377788899998999999999988887643
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.98 E-value=9.1e-06 Score=63.36 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 496 ~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
.+..+++++|.+|...+++++|+..|+++++++|++. .++.++.++...+.+++|++.|+++..++|..
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 4578999999999999999999999999999999984 78888999999999999999999999998854
No 197
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.95 E-value=3.1e-05 Score=71.78 Aligned_cols=95 Identities=8% Similarity=-0.043 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcC---c
Q 008244 463 SAEIAKEKGNQAYKDK----QWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKK---V 531 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~----~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~----l~~~~~Al~~~~~al~l~p~---~ 531 (573)
.+..+.++|..+.+ + ++++|++.|+++++ +.++.+++++|.+|.. .+++++|+..|+++++..+. -
T Consensus 49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~ 125 (212)
T 3rjv_A 49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAV 125 (212)
T ss_dssp CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHH
T ss_pred CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchH
Confidence 47788999999988 6 89999999999965 5789999999999998 89999999999999999985 3
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHhhcccc
Q 008244 532 RLICAEAQQERC----LDITRRQLKIFHMHWSW 560 (573)
Q Consensus 532 ~~~~~~~~~~~~----~~~~~~al~~~~~~~~~ 560 (573)
.+.+.++.++.. .+.+++|++.|+++...
T Consensus 126 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 126 DAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 588888888877 67899999999998876
No 198
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.92 E-value=2.2e-05 Score=81.01 Aligned_cols=93 Identities=11% Similarity=-0.087 Sum_probs=76.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCc----
Q 008244 469 EKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLD-----KKV---- 531 (573)
Q Consensus 469 ~~g~~~~~~~~~~~Ai~~y~~ai~~-----~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~-----p~~---- 531 (573)
+.+....+.|+|++|+..|+++|++ .|++ ...+.|+|.+|..+|+|++|+..|+++|++. |++
T Consensus 303 e~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 382 (433)
T 3qww_A 303 EEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA 382 (433)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 3344444568999999999999986 3444 5889999999999999999999999999864 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008244 532 RLICAEAQQERCLDITRRQLKIFHMHWSWS 561 (573)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 561 (573)
..+..+|.++..++.+++|+..|++++.+.
T Consensus 383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 383 SMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 377888999999999999999998887754
No 199
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.91 E-value=6.1e-05 Score=75.97 Aligned_cols=100 Identities=10% Similarity=-0.070 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-- 531 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~--------p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-- 531 (573)
.....+.++|..++..|+|++|+..|++++++. |....++.++|.+|..+|++++|+..+++++++.+..
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 346668899999999999999999999999875 3356788999999999999999999999999998753
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008244 532 ----RLICAEAQQERCLDITRRQLKIFHMHWSWS 561 (573)
Q Consensus 532 ----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 561 (573)
..+..++.++...+.+++|...++.+..+.
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 204 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 366778888888999999999999887653
No 200
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.91 E-value=1.2e-05 Score=64.06 Aligned_cols=62 Identities=19% Similarity=0.181 Sum_probs=56.0
Q ss_pred HHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 462 QSAE-IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 462 ~~~~-~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
.... .+..+|..+++.|++++|++.|+++++++|++..++++ +.+.+++..|+++++++|++
T Consensus 32 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 32 VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence 4567 89999999999999999999999999999999998865 67889999999999998875
No 201
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.88 E-value=7.1e-05 Score=79.71 Aligned_cols=102 Identities=13% Similarity=0.080 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEA 538 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~-~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~ 538 (573)
|+....|...+..+.+.|++++|+..|+++++++|+++ .+|.+.+.++.+.|++++|++.|++|++..|.. ..+...+
T Consensus 318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a 397 (530)
T 2ooe_A 318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA 397 (530)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 45678889999999999999999999999999999885 688888888877777777777777777776654 2333333
Q ss_pred HHH-HHHHHHHHHHHHHhhccccCC
Q 008244 539 QQE-RCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 539 ~~~-~~~~~~~~al~~~~~~~~~~~ 562 (573)
... ...+.+++|.+.|+++.+..|
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~p 422 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKYG 422 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCChhHHHHHHHHHHHHCC
Confidence 221 124555666666666665555
No 202
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.84 E-value=5.3e-05 Score=78.17 Aligned_cols=73 Identities=14% Similarity=0.080 Sum_probs=65.4
Q ss_pred CCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~-----~p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
...++|..+..+.++|..|..+|+|++|+..|+++|++ .|++ +..|+|+|.+|..+|+|++|+..|++|+++
T Consensus 332 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 332 FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 44567889999999999999999999999999999976 2444 688999999999999999999999999986
Q ss_pred C
Q 008244 528 D 528 (573)
Q Consensus 528 ~ 528 (573)
.
T Consensus 412 ~ 412 (433)
T 3qww_A 412 M 412 (433)
T ss_dssp H
T ss_pred H
Confidence 4
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.83 E-value=7.7e-05 Score=77.02 Aligned_cols=99 Identities=10% Similarity=0.069 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----c
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-----GNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLD-----K 529 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~-----p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~-----p 529 (573)
..+...+....+.++|+|++|++.|++++++. |++ ...+.|++.+|..+|+|++|+..++++|++. |
T Consensus 286 ~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 286 EVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence 35566677778889999999999999999763 444 5889999999999999999999999999864 4
Q ss_pred Cc----HHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008244 530 KV----RLICAEAQQERCLDITRRQLKIFHMHWSWS 561 (573)
Q Consensus 530 ~~----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 561 (573)
++ ..++.+|.++..++++++|+..|++++.+.
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 44 377888899998999999999888887643
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.83 E-value=0.00017 Score=61.78 Aligned_cols=90 Identities=12% Similarity=0.064 Sum_probs=78.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH--
Q 008244 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKVRLICAEAQQERC-- 543 (573)
Q Consensus 470 ~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~----l~~~~~Al~~~~~al~l~p~~~~~~~~~~~~~~-- 543 (573)
+|..+...+.+++|++.|+++.+. .++.+++++|.+|.. .+++++|++.|++|.+. .+..+.+.++.++..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-NDQDGCLILGYKQYAGK 107 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHCCC
Confidence 899998889999999999999987 789999999999999 89999999999999987 333577888888877
Q ss_pred --HHHHHHHHHHHhhccccCC
Q 008244 544 --LDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 544 --~~~~~~al~~~~~~~~~~~ 562 (573)
...+++|++.|+++.....
T Consensus 108 g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 108 GVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCcCHHHHHHHHHHHHHCCC
Confidence 6889999999998876543
No 205
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.83 E-value=1.3e-05 Score=77.07 Aligned_cols=97 Identities=9% Similarity=-0.044 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCc--HHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKV--RLICAEAQQ 540 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~-p~~--~~~~~~~~~ 540 (573)
.......+..+.+.|+|++|.+.|+..+..+|++. .++.+|.++++.++|++|+..++++++.. |.+ .+++.++.+
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence 34455677888899999999999999999999988 99999999999999999999999988864 322 478999999
Q ss_pred HHHHHHHHHHHHHHhhccccC
Q 008244 541 ERCLDITRRQLKIFHMHWSWS 561 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~~~~~ 561 (573)
+..++.+++|++.|++...-+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTST
T ss_pred HHHCCCHHHHHHHHHHHhcCC
Confidence 999999999999999987533
No 206
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.71 E-value=0.0001 Score=58.27 Aligned_cols=70 Identities=11% Similarity=0.013 Sum_probs=65.2
Q ss_pred cCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 494 NGNNATYYSNRAAAYLESGS---FLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 494 ~p~~~~~~~n~a~~~~~l~~---~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
+|+++.++..+|.+++..++ .++|...+++||++||++ .+.+.+|......+++++|+..|++....+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 68999999999999987776 799999999999999999 58889999999999999999999999999887
No 207
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.69 E-value=0.00014 Score=73.37 Aligned_cols=103 Identities=9% Similarity=-0.029 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----- 530 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~----- 530 (573)
.....+..+|..++..|+|++|+..|++++++.+.. ..++.++|.++...|++++|+..|++++++.+.
T Consensus 51 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 130 (373)
T 1hz4_A 51 SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ 130 (373)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 356678899999999999999999999999986643 355889999999999999999999999998632
Q ss_pred ---c-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 531 ---V-RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 531 ---~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
. ..+..++.++...+++++|.+.|+++..+.+..
T Consensus 131 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 131 LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 2 356667888888899999999999998877643
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.63 E-value=0.00012 Score=72.66 Aligned_cols=94 Identities=15% Similarity=0.032 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH--HHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRL--ICAEA 538 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~--~~~~~ 538 (573)
+..+..+...+..+..+|++++|+..+++|++++| +..+|..+|.++...|++++|++.|++|+.++|.... ++.-.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l 352 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENG 352 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHHhCc
Confidence 45677888888888888999999999999999996 5788899999999999999999999999999999853 22223
Q ss_pred HHHHHHHHHHHHHHHHh
Q 008244 539 QQERCLDITRRQLKIFH 555 (573)
Q Consensus 539 ~~~~~~~~~~~al~~~~ 555 (573)
-.+..++.+.-++..|.
T Consensus 353 ~F~sn~~~i~~~~~~~~ 369 (372)
T 3ly7_A 353 IFQTSVPYVVPYLDKFL 369 (372)
T ss_dssp SSCCCHHHHCHHHHHHH
T ss_pred eeecchhhhHHHHHhcc
Confidence 44455566666666664
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.59 E-value=0.00028 Score=72.80 Aligned_cols=74 Identities=12% Similarity=0.024 Sum_probs=65.7
Q ss_pred CCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-----GNN---ATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (573)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~-----p~~---~~~~~n~a~~~~~l~~~~~Al~~~~~al~ 526 (573)
....+++..+..+.++|..|..+|+|++|+..|.++|++. |++ ...++|+|.+|..+|+|++|+..+++|++
T Consensus 320 ~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 320 RLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3456778899999999999999999999999999999762 444 68899999999999999999999999998
Q ss_pred hC
Q 008244 527 LD 528 (573)
Q Consensus 527 l~ 528 (573)
+-
T Consensus 400 i~ 401 (429)
T 3qwp_A 400 IM 401 (429)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.53 E-value=0.00017 Score=62.00 Aligned_cols=87 Identities=11% Similarity=-0.027 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-cCc--HHHHHHHHHHHHHHHHHHHHH
Q 008244 479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLD-KKV--RLICAEAQQERCLDITRRQLK 552 (573)
Q Consensus 479 ~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~---~~~~Al~~~~~al~l~-p~~--~~~~~~~~~~~~~~~~~~al~ 552 (573)
..+.+.+.|.+.++.++.+..+.++.|.|+.+.+ ++++++..+++.++.+ |+. ..+|.++..+..+++|++|.+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3466778899999999999999999999999999 6779999999999999 843 488999999999999999999
Q ss_pred HHhhccccCCCCC
Q 008244 553 IFHMHWSWSPPIK 565 (573)
Q Consensus 553 ~~~~~~~~~~~~~ 565 (573)
.++..++++|...
T Consensus 93 y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 93 YVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHCTTCH
T ss_pred HHHHHHhcCCCCH
Confidence 9999999999654
No 211
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.43 E-value=0.00024 Score=67.79 Aligned_cols=68 Identities=9% Similarity=-0.033 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcC
Q 008244 463 SAEIAKEKGNQAYKD-----KQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKK 530 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~-----~~~~~Ai~~y~~ai~~~p~~-~~~~~n~a~~~~~-l~~~~~Al~~~~~al~l~p~ 530 (573)
....|.-+|..|++. |+.++|.++|++||+++|+. ...++..|..+.. .+++++|.+.+++|++.+|.
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 344566666666663 66666666666666666653 6666666666655 36666666666666666655
No 212
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.41 E-value=0.00074 Score=55.92 Aligned_cols=70 Identities=10% Similarity=-0.010 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhc-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 463 SAEIAKEKGNQAYKDKQWLK---AISFYTEAIKLN-G-NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~---Ai~~y~~ai~~~-p-~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
..+..++.+..+.+..+..+ +|..++..++.+ | ..-.+++.+|..++++|+|.+|+++++..|+++|+|.
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence 46788899999998887766 999999988887 5 5679999999999999999999999999999999995
No 213
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.40 E-value=0.0009 Score=70.29 Aligned_cols=95 Identities=14% Similarity=-0.011 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHHHH
Q 008244 464 AEIAKEKGNQAYKDK---QWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKVRLICA 536 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~---~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~----l~~~~~Al~~~~~al~l~p~~~~~~~ 536 (573)
...+.++|..+++.| ++++|+++|+++++. .++.+++++|.+|.. .+++++|+..|+++++.. +..+.+.
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~ 404 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-LSAAQVQ 404 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHH
Confidence 455677777777654 777888888887776 567778888888877 777888888888877764 2246666
Q ss_pred HHHHHHH----HHHHHHHHHHHhhccccC
Q 008244 537 EAQQERC----LDITRRQLKIFHMHWSWS 561 (573)
Q Consensus 537 ~~~~~~~----~~~~~~al~~~~~~~~~~ 561 (573)
++.++.. .+.+++|.+.|+++....
T Consensus 405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 6666665 567777777777776655
No 214
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.39 E-value=0.00077 Score=65.63 Aligned_cols=96 Identities=9% Similarity=-0.048 Sum_probs=65.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----cHHHHHHHH
Q 008244 467 AKEKGNQAYKDKQWLKAISFYTEAIKLNG--NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-----VRLICAEAQ 539 (573)
Q Consensus 467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p--~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~-----~~~~~~~~~ 539 (573)
+...|.++...|++++|++.|.+.|..+| ++..++..++.+|+++|+.+.|.+.+++..+.+|+ +.....+++
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Lae 182 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAE 182 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHH
Confidence 35677777777777777777777777776 66777777777777777777777777777777772 444444443
Q ss_pred H--HHHHH--HHHHHHHHHhhccccCC
Q 008244 540 Q--ERCLD--ITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 540 ~--~~~~~--~~~~al~~~~~~~~~~~ 562 (573)
. ....+ .+++|+..|+...+..|
T Consensus 183 a~v~l~~g~~~~q~A~~~f~El~~~~p 209 (310)
T 3mv2_B 183 SYIKFATNKETATSNFYYYEELSQTFP 209 (310)
T ss_dssp HHHHHHHTCSTTTHHHHHHHHHHTTSC
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhCC
Confidence 3 33333 67777777776554444
No 215
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.35 E-value=0.0023 Score=54.48 Aligned_cols=64 Identities=22% Similarity=0.101 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 008244 463 SAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLD 528 (573)
Q Consensus 463 ~~~~~~~~g~~~~~----~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~----l~~~~~Al~~~~~al~l~ 528 (573)
.+..++++|..|.+ .+++++|++.|+++.+. .++.+++++|.+|.. .+++++|+..|++|.++.
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 37889999999999 89999999999999987 789999999999999 999999999999999985
No 216
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.27 E-value=0.0011 Score=69.72 Aligned_cols=95 Identities=8% Similarity=-0.100 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCcCcHHH
Q 008244 463 SAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKVRLI 534 (573)
Q Consensus 463 ~~~~~~~~g~~~~~----~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~----l~~~~~Al~~~~~al~l~p~~~~~ 534 (573)
.+..+..+|..+.. .+++++|+++|+++++. .++.+++++|.+|.. .+++++|+..|+++++.+ +..+.
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~ 150 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-RDSGQ 150 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHH
Confidence 46678889999998 89999999999999876 588899999999998 889999999999998764 23577
Q ss_pred HHHHHHHHH----HHHHHHHHHHHhhcccc
Q 008244 535 CAEAQQERC----LDITRRQLKIFHMHWSW 560 (573)
Q Consensus 535 ~~~~~~~~~----~~~~~~al~~~~~~~~~ 560 (573)
+.++.++.. .+.+++|++.|+++...
T Consensus 151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 778887776 56889999999988764
No 217
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.23 E-value=0.0042 Score=52.25 Aligned_cols=70 Identities=7% Similarity=0.017 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 463 SAEIAKEKGNQAYKDKQW---LKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~---~~Ai~~y~~ai~~~p~-~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
..+..++.+..+.+..+- +++|..++..++..|. .-.++|.+|..++++|+|.+|.++++..|+++|+|.
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 367788999999887655 5799999999998884 578999999999999999999999999999999995
No 218
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.22 E-value=0.0036 Score=51.95 Aligned_cols=69 Identities=7% Similarity=0.010 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 464 AEIAKEKGNQAYKDKQW---LKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~---~~Ai~~y~~ai~~~p~-~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
++..++.+..+.+..+- .++|..++..++.+|. .-.+++.+|..++++|+|.+|.++++..|+++|+|.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 57788888888887654 5799999999998884 579999999999999999999999999999999996
No 219
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.17 E-value=0.0022 Score=73.59 Aligned_cols=91 Identities=11% Similarity=0.051 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----------
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---------- 531 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---------- 531 (573)
+....|.+.|..+.+.|+|++|+++|.+| +++..|.+.+.++.++|+|++|++.+.+|.+.+++.
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 44788999999999999999999999776 899999999999999999999999999998877542
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008244 532 ------------------RLICAEAQQERCLDITRRQLKIFHMH 557 (573)
Q Consensus 532 ------------------~~~~~~~~~~~~~~~~~~al~~~~~~ 557 (573)
..++..|..+...+.+++|...|.++
T Consensus 1178 AKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 12333455555556677777777665
No 220
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.16 E-value=0.0024 Score=73.40 Aligned_cols=98 Identities=12% Similarity=0.021 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-------------------------CCHHHHHHHHHHHHHcCCHHHHHH
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNG-------------------------NNATYYSNRAAAYLESGSFLQAEA 519 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p-------------------------~~~~~~~n~a~~~~~l~~~~~Al~ 519 (573)
..|..++..+.+.|+|++|+++|++|...++ .++..+..++..|.+.|.|++|+.
T Consensus 1222 ~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~ 1301 (1630)
T 1xi4_A 1222 SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELIT 1301 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3455555555555555555555555533322 123344455555556666666666
Q ss_pred HHHHHHHhCcCcHHHH---HHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244 520 DCTKAINLDKKVRLIC---AEAQQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 520 ~~~~al~l~p~~~~~~---~~~~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
.|+++|.+++.+..++ .........+...+.++.|.....+++
T Consensus 1302 LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1302 MLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred HHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 6666666665543221 112222233555555555555544433
No 221
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.14 E-value=0.00095 Score=69.47 Aligned_cols=90 Identities=13% Similarity=-0.062 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCcCc-HHHHHH
Q 008244 466 IAKEKGNQAYKDK---QWLKAISFYTEAIKLNGNNATYYSNRAAAYLES----GSFLQAEADCTKAINLDKKV-RLICAE 537 (573)
Q Consensus 466 ~~~~~g~~~~~~~---~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l----~~~~~Al~~~~~al~l~p~~-~~~~~~ 537 (573)
.+.++|..+.+.| ++++|++.|+++++..+.++..++++|.+|... +++++|+..|+++. |++ .+.+.+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L 254 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL 254 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence 5555666666665 666666666666666666666556666665444 45556666665555 333 344444
Q ss_pred HHH-H--HHHHHHHHHHHHHhhcc
Q 008244 538 AQQ-E--RCLDITRRQLKIFHMHW 558 (573)
Q Consensus 538 ~~~-~--~~~~~~~~al~~~~~~~ 558 (573)
+.+ + ...+.+++|++.|+++.
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHH
Confidence 443 2 22344455555554443
No 222
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.07 E-value=0.0021 Score=66.80 Aligned_cols=93 Identities=11% Similarity=-0.070 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCcCc-H
Q 008244 462 QSAEIAKEKGNQA---YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-----SFLQAEADCTKAINLDKKV-R 532 (573)
Q Consensus 462 ~~~~~~~~~g~~~---~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~-----~~~~Al~~~~~al~l~p~~-~ 532 (573)
..+..++++|..+ ...+++++|++.|+++++. .++.+++++|.+|. .| ++++|+..|++|+ +.+ .
T Consensus 246 g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~ 319 (452)
T 3e4b_A 246 GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVA 319 (452)
T ss_dssp GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHH
Confidence 3355566666663 3567777777777777654 36777777777776 34 7777777777777 444 4
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHhhcccc
Q 008244 533 LICAEAQQERC----LDITRRQLKIFHMHWSW 560 (573)
Q Consensus 533 ~~~~~~~~~~~----~~~~~~al~~~~~~~~~ 560 (573)
+.+.++.++.. ...+++|++.|+++...
T Consensus 320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 66666655543 23677777777776653
No 223
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.00094 Score=68.50 Aligned_cols=98 Identities=9% Similarity=0.079 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV---- 531 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~------p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~---- 531 (573)
..+..+.++|..++..|+|++|+..+++++... +....+|.+.+.+|..+++|++|...+++++++.+..
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 212 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPT 212 (434)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCch
Confidence 357788999999999999999999999998763 3347899999999999999999999999999886432
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244 532 ----RLICAEAQQERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 532 ----~~~~~~~~~~~~~~~~~~al~~~~~~~~ 559 (573)
..+...+..+...+.+.+|.+.|..++.
T Consensus 213 ~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 213 QTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2344445555555677777777766654
No 224
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.01 E-value=0.0024 Score=55.30 Aligned_cols=93 Identities=13% Similarity=0.052 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---Cc--
Q 008244 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------ATYYSNRAAAYLESGSFLQAEADCTKAINLDK---KV-- 531 (573)
Q Consensus 466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~---------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p---~~-- 531 (573)
.++++...++..+.|+.|+-.++.++.+..++ ...+...|.+++..++|..|+..|++||++.- ++
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46778888889999999999988877664332 35788889999999999999999999876532 11
Q ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008244 532 ---------------------RLICAEAQQERCLDITRRQLKIFHMHW 558 (573)
Q Consensus 532 ---------------------~~~~~~~~~~~~~~~~~~al~~~~~~~ 558 (573)
...|+.+.++..++.+++|+..++.-+
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 255777888888899999998887543
No 225
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.82 E-value=0.0074 Score=52.25 Aligned_cols=64 Identities=19% Similarity=0.131 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-------------------------CCHHHHHHHHHHHHHcCCHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG-------------------------NNATYYSNRAAAYLESGSFL 515 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p-------------------------~~~~~~~n~a~~~~~l~~~~ 515 (573)
..+.+.+.-.|+.+|.+++|..|...|++||++.. .+.++.+..+.||.++++++
T Consensus 60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~ 139 (167)
T 3ffl_A 60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDK 139 (167)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHH
Confidence 46688899999999999999999999999986521 11378899999999999999
Q ss_pred HHHHHHHHH
Q 008244 516 QAEADCTKA 524 (573)
Q Consensus 516 ~Al~~~~~a 524 (573)
+|+...+..
T Consensus 140 ~Ai~~Le~I 148 (167)
T 3ffl_A 140 DAIAILDGI 148 (167)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHhcC
Confidence 999987764
No 226
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.82 E-value=0.002 Score=65.72 Aligned_cols=92 Identities=12% Similarity=0.085 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHH------------------------------HHHHHHHcCCH
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN------------------------------RAAAYLESGSF 514 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n------------------------------~a~~~~~l~~~ 514 (573)
..|..++..+++.|+|++|+++|.++ +++..|.. +..+|.+.|++
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYF 223 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCH
Confidence 45677888888888888888888887 24444444 34556666677
Q ss_pred HHHHHHHHHHHHhCcCcH-HHHHH--HHHHHHHHHHHHHHHHHhhccccC
Q 008244 515 LQAEADCTKAINLDKKVR-LICAE--AQQERCLDITRRQLKIFHMHWSWS 561 (573)
Q Consensus 515 ~~Al~~~~~al~l~p~~~-~~~~~--~~~~~~~~~~~~al~~~~~~~~~~ 561 (573)
++|+..+++++.+++.+. .+..+ +......+...+.++.|..+..++
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~ 273 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP 273 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCc
Confidence 777777777777776653 22222 233333466666666666555443
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.79 E-value=0.0064 Score=58.01 Aligned_cols=69 Identities=9% Similarity=0.003 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHH-HHHHHHHHHHHhhccccCCCC
Q 008244 496 NNATYYSNRAAAYLES-----GSFLQAEADCTKAINLDKKV--RLICAEAQQERC-LDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 496 ~~~~~~~n~a~~~~~l-----~~~~~Al~~~~~al~l~p~~--~~~~~~~~~~~~-~~~~~~al~~~~~~~~~~~~~ 564 (573)
.+..+|..+|..|.++ |+.++|.++|++||+++|+. ...+..++.+.. .++++++.+.++++...+|..
T Consensus 197 ~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 197 QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 3567888899999995 99999999999999999964 577777877766 488999999999999888854
No 228
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.75 E-value=0.002 Score=62.75 Aligned_cols=92 Identities=5% Similarity=-0.033 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CcCc
Q 008244 466 IAKEKGNQAYKDK--QWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINL----------DKKV 531 (573)
Q Consensus 466 ~~~~~g~~~~~~~--~~~~Ai~~y~~ai~~~p~--~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l----------~p~~ 531 (573)
.....+.+.+..| ++++|+..|+++.+..|+ ....++| |++++|++++|.+++++++++ +|++
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~ 254 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 254 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence 3334454455445 888888888888777776 3455555 788888888888888877776 3555
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244 532 R-LICAEAQQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 532 ~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
. .+..+..+...++. ++.+.+.+..+..|
T Consensus 255 ~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 255 PTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 4 44455444444443 66666666666666
No 229
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.0027 Score=64.96 Aligned_cols=67 Identities=10% Similarity=-0.048 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--c-----HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--V-----RLICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 498 ~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~--~-----~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
..++.++|.+|..+|+|++|+..+++++..... + ..+...++++..++.+.+|...|.++....+..
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 208 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI 208 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC
Confidence 455666666666666666666666666554221 1 255555666666666666666666666554443
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.47 E-value=0.015 Score=46.57 Aligned_cols=45 Identities=11% Similarity=0.119 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRA 505 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a 505 (573)
......+.++|..+++.|++++|+..|+++++++|++..+..|+.
T Consensus 43 ~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 43 IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 456788999999999999999999999999999999999999987
No 231
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.14 E-value=0.0033 Score=64.19 Aligned_cols=89 Identities=11% Similarity=0.178 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-H----HHH----
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-R----LIC---- 535 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~----~~~---- 535 (573)
..|...|..++..|+|++|+..|+++ ..|.+++.|+.++|+|++|++.|++|. +|.- + +..
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~e 192 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKE 192 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCc
Confidence 38999999999999999999999987 579999999999999999999999993 4421 1 111
Q ss_pred -------------------HHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 536 -------------------AEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 536 -------------------~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
.....+...+.++++++.++.+..+++.
T Consensus 193 f~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~a 239 (449)
T 1b89_A 193 FRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA 239 (449)
T ss_dssp HHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH
Confidence 1124566668999999999999988864
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.065 Score=58.53 Aligned_cols=62 Identities=10% Similarity=0.072 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~a 524 (573)
....+..++.-+.++|+|+-|+++-++|+...|.+...|+.++.||.++|+|+.|+-..+-+
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34567788999999999999999999999999999999999999999999999998655543
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.37 E-value=0.032 Score=46.11 Aligned_cols=89 Identities=10% Similarity=-0.068 Sum_probs=77.2
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-cCc--HHHHHHHHHHHHHHHHHHH
Q 008244 477 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ---AEADCTKAINLD-KKV--RLICAEAQQERCLDITRRQ 550 (573)
Q Consensus 477 ~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~---Al~~~~~al~l~-p~~--~~~~~~~~~~~~~~~~~~a 550 (573)
....+.+.+.|.+.++.++.+...-++.|.|+.+..+..+ ++..++..++-+ |.. ..+|.+|..+..++.|.+|
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3445677788999999899999999999999999988776 999999999987 644 4888999999999999999
Q ss_pred HHHHhhccccCCCCC
Q 008244 551 LKIFHMHWSWSPPIK 565 (573)
Q Consensus 551 l~~~~~~~~~~~~~~ 565 (573)
.+.++..++..|..+
T Consensus 94 ~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhCCCCH
Confidence 999999999999654
No 234
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.30 E-value=0.14 Score=47.96 Aligned_cols=62 Identities=23% Similarity=0.226 Sum_probs=58.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 471 g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
...+++.++.++|++.....|+.+|.|+.....+-+.+.-.|+|+.|++.++.+.+++|+..
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 34678899999999999999999999999999999999999999999999999999999983
No 235
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.27 E-value=0.16 Score=55.15 Aligned_cols=99 Identities=14% Similarity=0.064 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------Cc
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAI-SFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL-----------DK 529 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai-~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l-----------~p 529 (573)
.....|...+.-+.+.++.++|+ +.|.+|+..+|.+..+|...+....+.+++++|.+.|+++++. .|
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 45788889999888999999997 9999999999999999999999999999999999999999975 24
Q ss_pred C-----------c-HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244 530 K-----------V-RLICAEAQQERCLDITRRQLKIFHMHWSW 560 (573)
Q Consensus 530 ~-----------~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~ 560 (573)
. + ..+...++.....+..+.|-+.|.++.+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 2 24555566666667788888888888766
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.21 E-value=0.13 Score=43.66 Aligned_cols=99 Identities=16% Similarity=-0.073 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008244 463 SAEIAKEKGNQAYKDKQW------LKAISFYTEAIKLNGNN--------ATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~------~~Ai~~y~~ai~~~p~~--------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~ 528 (573)
+.+.|..-...+-+.|+. ++-++.|++|+..-|-. ..+|.+.|.- ..+++.++|.+.|+.++++.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh
Confidence 344444444444444555 55555666666544431 2344444422 44556666666666666654
Q ss_pred cCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008244 529 KKV-RLICAEAQQERCLDITRRQLKIFHMHWSWSP 562 (573)
Q Consensus 529 p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 562 (573)
..+ +.+...|+.+..++....|.+.+.++..+.|
T Consensus 91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 444 3444455555555566666665555555544
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.35 E-value=0.57 Score=47.15 Aligned_cols=56 Identities=11% Similarity=-0.023 Sum_probs=30.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008244 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI 525 (573)
Q Consensus 470 ~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al 525 (573)
++..+...|++.+|+..+.+++..+|-+..+|..+-.+|...|+..+|++.|+++-
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555555555555555443
No 238
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.32 E-value=0.53 Score=40.55 Aligned_cols=94 Identities=9% Similarity=0.009 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhC--cC----------
Q 008244 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI--NLD--KK---------- 530 (573)
Q Consensus 465 ~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al--~l~--p~---------- 530 (573)
+-..-.+..++-.|.|..|+-.. ..-+-....+..+.||.++++|..|+...+..+ +.+ |+
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L-----~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHL-----HKLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV 108 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHH-----HTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred HHHhhhhhhhhhcchHhHHHHHH-----HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence 33455788888899987777644 344667888889999999999999999999999 333 33
Q ss_pred ---cH--HHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008244 531 ---VR--LICAEAQQERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 531 ---~~--~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
++ .+...|......+..++|.+.|.+++...|-
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 23 4445678888889999999999998887763
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.65 E-value=2.8 Score=35.48 Aligned_cols=78 Identities=13% Similarity=-0.079 Sum_probs=64.9
Q ss_pred CccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Q 008244 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKVRLIC 535 (573)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~~~~ 535 (573)
......-+..|..-+.- ...++.++|.+.|+.++++....+..|...|+--.+.|+...|.+.+.+|+.+.|.....+
T Consensus 54 ~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 54 YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 33444556666666643 5669999999999999999888899999999999999999999999999999999876443
No 240
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=92.02 E-value=0.59 Score=50.78 Aligned_cols=101 Identities=6% Similarity=-0.134 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcHHH-HHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-NGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKVRLI-CAEAQ 539 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~-~p~~~~~~~n~a~~~~~l~~-~~~Al~~~~~al~l~p~~~~~-~~~~~ 539 (573)
....|...++...+.++.+.|...|.+|++. .+.....|...+..-.+.++ ++.|...|+++++..|+...+ ...++
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 3456777777777788888899999999887 44556777776766666654 888999999999888887533 35566
Q ss_pred HHHHHHHHHHHHHHHhhccccCCC
Q 008244 540 QERCLDITRRQLKIFHMHWSWSPP 563 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~~~~~~~~~ 563 (573)
.+...+..+.+-..|+++....|.
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCC
Confidence 666677888888888888877663
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.62 E-value=0.75 Score=46.30 Aligned_cols=56 Identities=13% Similarity=-0.032 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHh
Q 008244 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFH 555 (573)
Q Consensus 500 ~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~ 555 (573)
+...++.+++.+|++.+|+..+++++..+|-+. .+..+..++...++..+|++.|+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~ 229 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYR 229 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345577888889999999999999999998773 44444444444455555555444
No 242
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=91.48 E-value=2.6 Score=43.93 Aligned_cols=94 Identities=7% Similarity=-0.048 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINL--DKKVRLICAEAQQ 540 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~-p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l--~p~~~~~~~~~~~ 540 (573)
...|..+-..+.+.|++++|++.|++..+.. .-+...|..+=.+|.+.|++++|.+.+++..+. .|+...+......
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 5678888899999999999999999988764 236778888889999999999999999998875 4777666666666
Q ss_pred HHHHHHHHHHHHHHhhc
Q 008244 541 ERCLDITRRQLKIFHMH 557 (573)
Q Consensus 541 ~~~~~~~~~al~~~~~~ 557 (573)
+...+..++|++.|+..
T Consensus 185 ~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHH
Confidence 66667888888888754
No 243
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.46 E-value=1.6 Score=43.75 Aligned_cols=91 Identities=10% Similarity=0.005 Sum_probs=70.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cC--c--HH
Q 008244 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGN--N----ATYYSNRAAAYLESGSFLQAEADCTKAINLD----KK--V--RL 533 (573)
Q Consensus 468 ~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~--~----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~----p~--~--~~ 533 (573)
..+|..|+..|+|.+|++.+++.++.... + .+.|......|..++++.++-..+++|.+.. ++ . ..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 37899999999999999999998875332 2 4788889999999999999999999987654 22 2 24
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHhhcc
Q 008244 534 ICAEAQQER-CLDITRRQLKIFHMHW 558 (573)
Q Consensus 534 ~~~~~~~~~-~~~~~~~al~~~~~~~ 558 (573)
....|..+. ..+.|+.|...|..++
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 455567777 6677788877777654
No 244
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=88.25 E-value=3.8 Score=30.81 Aligned_cols=31 Identities=26% Similarity=0.192 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~ 492 (573)
+.+..+..+|...-+.|+|++|+.+|.++|+
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4566777777777888888888887766654
No 245
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=88.06 E-value=1.3 Score=46.02 Aligned_cols=66 Identities=21% Similarity=0.162 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
.+..+|....-...+..|..+|.+|+.+.|++...|+.+|......+++-+|+-+|.+++--..-+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf 219 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF 219 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCC
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCC
Confidence 345677777777788999999999999999999999999999999999999999999998765434
No 246
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=87.67 E-value=4.6 Score=30.39 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~ 492 (573)
.+..+..++...-+.|+|++|+.+|.++|+
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455566666666677777777776655543
No 247
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.58 E-value=0.81 Score=46.76 Aligned_cols=96 Identities=7% Similarity=-0.136 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCc----HH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLD---KKV----RL 533 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~---~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~---p~~----~~ 533 (573)
...+..+|..+++.|++++|+++|.+..+.... -...+.+.-.+++..++|..+...++++-.+- ++. +.
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 345678999999999999999999999887543 36888889999999999999999999996653 222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244 534 ICAEAQQERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 534 ~~~~~~~~~~~~~~~~al~~~~~~~~ 559 (573)
....+..+...+.|..|.+.|...+.
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 34445555555778888887765543
No 248
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=84.78 E-value=11 Score=28.50 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~ 492 (573)
..+..+..++..+-+.|+|++|+.+|.++|+
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4466677777777778888888887766654
No 249
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=83.65 E-value=13 Score=28.52 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~ 492 (573)
+.+..+..++...-+.++|++|+.+|.++|+
T Consensus 13 ~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 13 TAAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566677777777777888888777765554
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.45 E-value=5.4 Score=32.94 Aligned_cols=79 Identities=8% Similarity=-0.180 Sum_probs=64.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008244 486 FYTEAIKLNGNNATYYSNRAAAYLESGSF---LQAEADCTKAINLDKKV--RLICAEAQQERCLDITRRQLKIFHMHWSW 560 (573)
Q Consensus 486 ~y~~ai~~~p~~~~~~~n~a~~~~~l~~~---~~Al~~~~~al~l~p~~--~~~~~~~~~~~~~~~~~~al~~~~~~~~~ 560 (573)
.|.+-+ ...-.+..-+|.|-|+.+..+. .+++..++..++.+|.. ..+|.++..+..++.|++|++..+..++.
T Consensus 29 qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 29 QVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 344433 3334678899999999998764 57899999999999966 38888999999999999999999999999
Q ss_pred CCCCC
Q 008244 561 SPPIK 565 (573)
Q Consensus 561 ~~~~~ 565 (573)
.|..+
T Consensus 108 eP~N~ 112 (134)
T 3o48_A 108 ERNNK 112 (134)
T ss_dssp CTTCH
T ss_pred CCCCH
Confidence 99754
No 251
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=83.39 E-value=6.9 Score=33.76 Aligned_cols=68 Identities=13% Similarity=0.021 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hhc---------------CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAI--KLN---------------GNNAT-YYSNRAAAYLESGSFLQAEADCTKAI 525 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai--~~~---------------p~~~~-~~~n~a~~~~~l~~~~~Al~~~~~al 525 (573)
+....-+...+.+.++|+.|+.+.+..| +++ |.+.+ .++.+|..+...|+-+||+.++.+..
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 5556667889999999999999999999 333 33444 45557899999999999999999998
Q ss_pred HhCcCc
Q 008244 526 NLDKKV 531 (573)
Q Consensus 526 ~l~p~~ 531 (573)
.+.|-+
T Consensus 142 ~~~~lf 147 (242)
T 3kae_A 142 GKSFLF 147 (242)
T ss_dssp HHCCCH
T ss_pred CCcccc
Confidence 887764
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.30 E-value=2.4 Score=46.30 Aligned_cols=61 Identities=10% Similarity=-0.034 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 499 ~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~ 559 (573)
.++.--+.-++..++|+-|++.+++|+..-|.. ...+.+++++..+++|+.||-.+...+.
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 355555777778999999999999999999995 6999999999999999999999988874
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.24 E-value=9.5 Score=31.89 Aligned_cols=71 Identities=8% Similarity=-0.139 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 008244 495 GNNATYYSNRAAAYLESGSF---LQAEADCTKAINLDKKV--RLICAEAQQERCLDITRRQLKIFHMHWSWSPPIK 565 (573)
Q Consensus 495 p~~~~~~~n~a~~~~~l~~~---~~Al~~~~~al~l~p~~--~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 565 (573)
.-.....+|.|.|+.+..+. .+++..++..++-+|.. ..+|.++..+..++.|.+|.+..+..++..|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 46788999999999998865 57999999999988876 3888899999999999999999999999999754
No 254
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=81.34 E-value=18 Score=29.11 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-H-HHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV-R-LICAEAQ 539 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~-~~~~~~~ 539 (573)
+.+..+..++...-+.++|++|+.+|.++| +.|.++++..+.+ . .-..+.+
T Consensus 16 ~kAi~lv~~Ave~D~ag~y~eAl~lY~~Ai---------------------------e~l~~alk~e~~~~~~k~~lr~K 68 (117)
T 2cpt_A 16 QKAIDLASKAAQEDKAGNYEEALQLYQHAV---------------------------QYFLHVVKYEAQGDKAKQSIRAK 68 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH---------------------------HHHHHHHHTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHH---------------------------HHHHHHHHhccCCHHHHHHHHHH
Confidence 445566666666666777777777665544 4456666666433 2 2334455
Q ss_pred HHHHHHHHHHHHHHHh
Q 008244 540 QERCLDITRRQLKIFH 555 (573)
Q Consensus 540 ~~~~~~~~~~al~~~~ 555 (573)
+..++.+.++-...+.
T Consensus 69 ~~eYl~RAE~LK~~l~ 84 (117)
T 2cpt_A 69 CTEYLDRAEKLKEYLK 84 (117)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5666655555555443
No 255
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=76.71 E-value=5.4 Score=30.29 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~ 492 (573)
..+-.+-.+++.+.+.|+|++||++..+|..
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3466667788888888999988888877654
No 256
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=76.04 E-value=24 Score=39.73 Aligned_cols=71 Identities=7% Similarity=-0.108 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL----NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--DKKVR 532 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~----~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l--~p~~~ 532 (573)
..-..+..+-+.|++.|+.++|.+.+.+.-+. ..-+...|+-+=..|.+.|++++|++.|++..+. .|+..
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 34556788889999999999999999765432 2347788888999999999999999999998774 48753
No 257
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=75.54 E-value=10 Score=39.30 Aligned_cols=51 Identities=8% Similarity=-0.079 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 480 ~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
.+.....|+++|...|..+.+|.+.+..+...|+.++|...|++|++. |..
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~ 245 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG 245 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc
Confidence 345678899999999999999999999999999999999999999999 986
No 258
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=75.52 E-value=15 Score=37.90 Aligned_cols=59 Identities=8% Similarity=-0.015 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008244 466 IAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (573)
Q Consensus 466 ~~~~~g~~~~~~~-~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~a 524 (573)
.|...+...+..+ +++.|...|+++++..|+++..|...+....++|+.+.|...|+++
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444444433 4666666666666666666666655555555666666666666665
No 259
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=75.08 E-value=24 Score=26.43 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~ 493 (573)
.+.+..+..++...-+.|+|++|+.+|.++++.
T Consensus 10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345666677777777778888887777666553
No 260
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=74.13 E-value=10 Score=27.65 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHH
Q 008244 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 501 (573)
Q Consensus 466 ~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~ 501 (573)
...++|..+..+|++++|+.++.+||.+.|+-..++
T Consensus 19 ~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 19 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 345789999999999999999999999988765443
No 261
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=73.47 E-value=34 Score=35.28 Aligned_cols=82 Identities=7% Similarity=-0.053 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 008244 478 KQWLKAISFYTEAIKLNG-NNATYYSNRAAAYLESGSFLQAEADCTKAINL--DKKVRLICAEAQQERCLDITRRQLKIF 554 (573)
Q Consensus 478 ~~~~~Ai~~y~~ai~~~p-~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l--~p~~~~~~~~~~~~~~~~~~~~al~~~ 554 (573)
++.++|.+.|++..+..- -+...|..+-.+|.+.|++++|++.+++..+. .|+...+......+...+..++|++.|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 347889999998877542 36778899999999999999999999998775 577666555556666668888899988
Q ss_pred hhccc
Q 008244 555 HMHWS 559 (573)
Q Consensus 555 ~~~~~ 559 (573)
+...+
T Consensus 164 ~~M~~ 168 (501)
T 4g26_A 164 AHMVE 168 (501)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 86543
No 262
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=72.95 E-value=24 Score=38.47 Aligned_cols=55 Identities=20% Similarity=0.117 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH--------HHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEA--------IKLNGNNATYYSNRAAAYLESGSFLQAE 518 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~a--------i~~~p~~~~~~~n~a~~~~~l~~~~~Al 518 (573)
...|.++|..+.+.++++.|+++|.++ |.....+...+..++......|+++.|.
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~ 743 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAF 743 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHH
Confidence 568899999999999999999999884 2223445444444444444444444444
No 263
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=71.11 E-value=15 Score=32.01 Aligned_cols=45 Identities=16% Similarity=0.044 Sum_probs=20.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008244 474 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523 (573)
Q Consensus 474 ~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~ 523 (573)
..+.|+++.|.+..++. ++...|..+|..-+..|+++-|..+|.+
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34444444444433222 3444444444444444444444444443
No 264
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=71.03 E-value=9.3 Score=29.40 Aligned_cols=42 Identities=14% Similarity=0.251 Sum_probs=32.2
Q ss_pred cChHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHH
Q 008244 459 NQKQSAEIA----KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY 500 (573)
Q Consensus 459 ~~~~~~~~~----~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~ 500 (573)
.+++..+.+ .++|..+..+|+++.|+.+|.+||.+.|+-..+
T Consensus 11 ~d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~L 56 (95)
T 1om2_A 11 KDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 56 (95)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 344445444 578999999999999999999999998764433
No 265
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=70.69 E-value=27 Score=29.00 Aligned_cols=62 Identities=18% Similarity=-0.047 Sum_probs=47.2
Q ss_pred HHHHHHH-HHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 466 IAKEKGN-QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 466 ~~~~~g~-~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
.+.+++. .+.++|+-++--+.+...+.-++-++..+..+|.+|-++|+-.+|-+...+|++.
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3455554 3466777777777777666766778999999999999999999999999998875
No 266
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.27 E-value=49 Score=33.51 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--GNN----ATYYSNRAAAYLESGSFLQAEADCTKA 524 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~--p~~----~~~~~n~a~~~~~l~~~~~Al~~~~~a 524 (573)
+.....++..+...|+|.+|...+.....-. ..+ ...+..-...|+..++|..|...++++
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344445555555555555555554443211 011 344455555555555555555555554
No 267
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=67.45 E-value=8.1 Score=29.01 Aligned_cols=55 Identities=13% Similarity=0.041 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH-------HHHHhCcCcH-HHHHHHHHHHHHHHHHH
Q 008244 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT-------KAINLDKKVR-LICAEAQQERCLDITRR 549 (573)
Q Consensus 480 ~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~-------~al~l~p~~~-~~~~~~~~~~~~~~~~~ 549 (573)
.++|++..++|++.| +.|+|++|+..|. ++++..|+.. .-..+.++..++++.++
T Consensus 16 ~~~Ai~lv~~Ave~D---------------~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RAE~ 78 (83)
T 2w2u_A 16 EEMARKYAINAVKAD---------------KEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIEV 78 (83)
T ss_dssp HHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 366777777776664 4555555555555 4555566542 22334555555555443
No 268
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=67.18 E-value=8.1 Score=28.98 Aligned_cols=53 Identities=15% Similarity=0.006 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH-------HHHHhCcCcH-HHHHHHHHHHHHHHHH
Q 008244 481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT-------KAINLDKKVR-LICAEAQQERCLDITR 548 (573)
Q Consensus 481 ~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~-------~al~l~p~~~-~~~~~~~~~~~~~~~~ 548 (573)
++|++..++|++.| +.|+|++|+..|. ++++..|+.. .-..+.++..++.+.+
T Consensus 9 ~~Ai~lv~~Ave~D---------------~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE 69 (83)
T 2v6y_A 9 DMARKYAILAVKAD---------------KEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRIS 69 (83)
T ss_dssp HHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 47777777777665 4555555555554 5555566543 2223445555554444
No 269
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=65.64 E-value=17 Score=39.70 Aligned_cols=49 Identities=20% Similarity=0.041 Sum_probs=39.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008244 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (573)
Q Consensus 471 g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~a 524 (573)
.....+.|++++|.+.+ ..-++...|.++|..+++.++++.|+++|.++
T Consensus 659 f~~~l~~~~~~~A~~~~-----~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 659 FELALKVGQLTLARDLL-----TDESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHTCHHHHHHHH-----TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eehhhhcCCHHHHHHHH-----HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34445667777777653 34468899999999999999999999999985
No 270
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=65.43 E-value=10 Score=28.74 Aligned_cols=29 Identities=31% Similarity=0.287 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 498 ATYYSNRAAAYLESGSFLQAEADCTKAIN 526 (573)
Q Consensus 498 ~~~~~n~a~~~~~l~~~~~Al~~~~~al~ 526 (573)
+-.+..|+..+++.|+|++||++.++|..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 56788899999999999999988777653
No 271
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=64.92 E-value=50 Score=28.65 Aligned_cols=61 Identities=8% Similarity=-0.073 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------cCCCHHHHHH-------------HHHHHHHcCCHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSN-------------RAAAYLESGSFLQAEADC 521 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~--------~p~~~~~~~n-------------~a~~~~~l~~~~~Al~~~ 521 (573)
....|+++|...+++|+++-|.+||.++=.. .-.+..-+.. .-.|++.+|+++++++.+
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHH
Confidence 3678999999999999999999999874221 1122222222 345666777777777766
Q ss_pred HH
Q 008244 522 TK 523 (573)
Q Consensus 522 ~~ 523 (573)
.+
T Consensus 113 ~~ 114 (177)
T 3mkq_B 113 AE 114 (177)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 272
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.88 E-value=27 Score=27.88 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---c------HHHHHHHHHHHHHHHHH
Q 008244 478 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---V------RLICAEAQQERCLDITR 548 (573)
Q Consensus 478 ~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~---~------~~~~~~~~~~~~~~~~~ 548 (573)
..|++|.++.+++|+++.. +.-...+..|.+.+..++++|.+..+ . .+...+.+....++..+
T Consensus 17 ~~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~ 88 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVR 88 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 3478888888999988752 22333344456666666777777643 1 34444556666677777
Q ss_pred HHHHHHhhccc
Q 008244 549 RQLKIFHMHWS 559 (573)
Q Consensus 549 ~al~~~~~~~~ 559 (573)
.-|..++....
T Consensus 89 ~RL~~Le~~~~ 99 (116)
T 2dl1_A 89 TRLEILEKGLA 99 (116)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHhcCC
Confidence 77777776554
No 273
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.22 E-value=16 Score=37.74 Aligned_cols=69 Identities=12% Similarity=-0.001 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~-------~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
...+..+.-.-..|...+.|++|....+++. .|.+ ..+++..|.++.-.++|.+|.+++..|++..|..
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 3557777788888999999999999999885 3322 6888899999999999999999999999988753
No 274
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=57.56 E-value=75 Score=30.41 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=20.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCcCcH
Q 008244 508 YLESGSFLQAEADCTKAINLDKKVR 532 (573)
Q Consensus 508 ~~~l~~~~~Al~~~~~al~l~p~~~ 532 (573)
.+|.++|.-|...+++.|++.|.-+
T Consensus 217 a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 217 HFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 3588889999999999999888643
No 275
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=57.30 E-value=13 Score=34.85 Aligned_cols=58 Identities=17% Similarity=-0.025 Sum_probs=47.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008244 507 AYLESGSFLQAEADCTKAINLDKKVR-LICAEAQQERCLDITRRQLKIFHMHWSWSPPI 564 (573)
Q Consensus 507 ~~~~l~~~~~Al~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 564 (573)
-+++.++.++|++.+...++-+|.+. ....+-+.+...+.|++|++.+....+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 45678999999999999999999994 44445566666699999999999988888853
No 276
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=57.26 E-value=15 Score=28.17 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH-------HHHHHHHHHhCcCcH-HHHHHHHHHHHHHHHHHHH
Q 008244 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQA-------EADCTKAINLDKKVR-LICAEAQQERCLDITRRQL 551 (573)
Q Consensus 480 ~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~A-------l~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~al 551 (573)
.+.|+...++|++.+ +.++|++| ++.|.++++..|+.. .-..+.++..++.+.++-.
T Consensus 12 l~~Ai~lv~~Ave~D---------------~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK 76 (93)
T 1wfd_A 12 STAAVAVLKRAVELD---------------AESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIK 76 (93)
T ss_dssp HHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777765 34444444 455555556666643 2333455555555554444
Q ss_pred HHH
Q 008244 552 KIF 554 (573)
Q Consensus 552 ~~~ 554 (573)
..+
T Consensus 77 ~~l 79 (93)
T 1wfd_A 77 KYL 79 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 277
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=56.14 E-value=14 Score=29.79 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 480 ~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
++.|+...++|++. -..++|++|+..|..++++
T Consensus 15 l~kAi~lv~~Ave~---------------D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 15 LQKAIDLASKAAQE---------------DKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHH---------------HHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HHccCHHHHHHHHHHHHHH
Confidence 35666666666644 3679999999999999996
No 278
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=55.02 E-value=75 Score=27.03 Aligned_cols=63 Identities=8% Similarity=0.013 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------HHHHHH---HHHHHHHcCCHHHHHHHHHHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSN---RAAAYLESGSFLQAEADCTKAIN 526 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~------~~~~~n---~a~~~~~l~~~~~Al~~~~~al~ 526 (573)
...-+..+..+|+.|+|=+|-+.++..-+..+.. ...+.. -|..+.+.|+..-|...+.+++.
T Consensus 32 ~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 32 LRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4455778999999999999999999998876554 233333 34455678999999999999987
No 279
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=52.61 E-value=31 Score=33.06 Aligned_cols=141 Identities=10% Similarity=0.001 Sum_probs=69.4
Q ss_pred hhccccccCCceeeecCccC-------CCCCc---eeEEEeccCCcHHHHHHHHHHHHHHHHHHHhhhhcCCC-CCCccC
Q 008244 392 LLSIASVSGCCQVTVPLGYY-------DKCPT---SVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLS-TNTFNQ 460 (573)
Q Consensus 392 ~t~~~nl~G~PaisvP~g~~-------~glPv---Glq~~~~~~~d~~ll~~a~~le~~l~~~~~~~~~~~~~-~~~~~~ 460 (573)
.+.+-.+.++|.+..|+... +++|+ ++..+.....+..-+--+..|++++.........-+.. ..+.++
T Consensus 63 ~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~~~l~~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e 142 (320)
T 3mkr_B 63 RTTYQALPCLPSMYGYPNRNWKDAGLKNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQE 142 (320)
T ss_dssp CEEECSSTTSCCEEECCBTTTTTCCSSSCCBCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHH
T ss_pred hhhccCCCCCCcchhhhcCCccccccccCCCCcccCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHH
Confidence 45566667888888887543 23443 33222221111111111223555555555554444433 233444
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHH--------HHHHHHHH---------hcCCCHHHHHHHHHH-HHHcCCHHHHHHHHH
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAI--------SFYTEAIK---------LNGNNATYYSNRAAA-YLESGSFLQAEADCT 522 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai--------~~y~~ai~---------~~p~~~~~~~n~a~~-~~~l~~~~~Al~~~~ 522 (573)
.++++.+......|.-.=+.+.+. +.-.+.++ +.|.+-.+-.+.|+- .+|.++|.-|...++
T Consensus 143 ~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fAr 222 (320)
T 3mkr_B 143 IAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFAR 222 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 455555555554443110111100 11122232 344443333334433 469999999999999
Q ss_pred HHHHhCcCcH
Q 008244 523 KAINLDKKVR 532 (573)
Q Consensus 523 ~al~l~p~~~ 532 (573)
+.|++.|+-+
T Consensus 223 rLLel~p~~~ 232 (320)
T 3mkr_B 223 RLLELGPKPE 232 (320)
T ss_dssp HHHHTCCCHH
T ss_pred HHHhcCCCHH
Confidence 9999998743
No 280
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=52.07 E-value=21 Score=26.74 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCcCcH-HHHHHHHHHHHHHHHHHHH
Q 008244 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI-------NLDKKVR-LICAEAQQERCLDITRRQL 551 (573)
Q Consensus 480 ~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al-------~l~p~~~-~~~~~~~~~~~~~~~~~al 551 (573)
.++|+...++|++.+ ..|+|++|+..|..++ +..++.. .-..+.++..++.+.+.-.
T Consensus 10 l~~A~~l~~~Av~~D---------------~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~RAE~Lk 74 (85)
T 2v6x_A 10 LTKGIELVQKAIDLD---------------TATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLK 74 (85)
T ss_dssp HHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777776553 4566666666655554 4455542 2233445555555544433
No 281
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=51.87 E-value=18 Score=26.68 Aligned_cols=32 Identities=9% Similarity=0.030 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~ 493 (573)
........+|..+...|+|+.|+.+|+.+++.
T Consensus 10 ~~i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 10 QMIVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 33556667888888888888888888888764
No 282
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=48.05 E-value=28 Score=37.41 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL 515 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~ 515 (573)
.....+++...+..|+|+-|.+..+.++..+|++..+..-++.+|.+++.-.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 4556778889999999999999999999999999999999999999888443
No 283
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=47.30 E-value=86 Score=23.51 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--HHHH-HHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYY-SNRAAAYL 509 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~--~~~~-~n~a~~~~ 509 (573)
+.+..+...|..+++.++|.+|...++++.....+. -..+ +.++.|--
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~k 101 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECRK 101 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHHH
Confidence 456667778888888888888888888887654332 2233 44555543
No 284
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=46.37 E-value=43 Score=29.79 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=34.9
Q ss_pred cChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCH
Q 008244 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA 498 (573)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~ 498 (573)
...+.+.-++-.|..++-+++|.+|.+++.+|++..|...
T Consensus 9 ~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 9 STAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 3456677888999999999999999999999999988764
No 285
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=43.72 E-value=1.6e+02 Score=29.23 Aligned_cols=67 Identities=12% Similarity=-0.054 Sum_probs=55.9
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CC----CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 008244 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---GN----NATYYSNRAAAYL-ESGSFLQAEADCTKAIN 526 (573)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~---p~----~~~~~~n~a~~~~-~l~~~~~Al~~~~~al~ 526 (573)
.....+.+..+...++..+++.++...|++|.... +. .+.+...-|..++ ..++|++|..+|-++++
T Consensus 135 ~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 135 KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 45667888899999999999999999999998654 12 2466777789999 89999999999999974
No 286
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=43.35 E-value=56 Score=33.62 Aligned_cols=60 Identities=10% Similarity=-0.122 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008244 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKV-RLICAEAQQERCLDITRRQLKIFHMHWS 559 (573)
Q Consensus 500 ~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~al~~~~~~~~ 559 (573)
.+.++|........+..|...|.+|+.++|++ ..+..+|.+....+..-+++-.|-++..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 45667777777788899999999999999998 5666666666655555555555555443
No 287
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.46 E-value=1.1e+02 Score=30.72 Aligned_cols=71 Identities=11% Similarity=0.141 Sum_probs=57.6
Q ss_pred CccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK---LNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~---~~p~~----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
+.+.....+.+..+...++..++|.+|...++++-. -.+.. ..+|...|..+...++|.+|-++|.++.+.
T Consensus 170 ~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 170 SMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 345567788999999999999999999999998642 22333 467788889999999999999999998764
No 288
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=38.78 E-value=41 Score=38.82 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=51.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008244 467 AKEKGNQAYKDKQWLKAISFYTEAIKL-----------------------NGNNATYYSNRAAAYLESGSFLQAEADCTK 523 (573)
Q Consensus 467 ~~~~g~~~~~~~~~~~Ai~~y~~ai~~-----------------------~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~ 523 (573)
-+-+|..++..|++++|.++|.++-.- ....+.+|+.....+.+.+.++.+++.++.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 377899999999999999999886310 111357788888899999999999999999
Q ss_pred HHHhCcC
Q 008244 524 AINLDKK 530 (573)
Q Consensus 524 al~l~p~ 530 (573)
|++..+.
T Consensus 925 Ai~~~~~ 931 (1139)
T 4fhn_B 925 ADASKET 931 (1139)
T ss_dssp HHHHCCS
T ss_pred HHHhccC
Confidence 9987643
No 289
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=38.10 E-value=54 Score=33.26 Aligned_cols=64 Identities=9% Similarity=-0.020 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCc
Q 008244 468 KEKGNQAYKDKQWLKAISFYTEAIKLNG----------NNATYYSNRAAAYLESGSFLQAEADCTKAINL-DKKV 531 (573)
Q Consensus 468 ~~~g~~~~~~~~~~~Ai~~y~~ai~~~p----------~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l-~p~~ 531 (573)
.++-..|++.++...+-..++..-.... +-..++|.+|..++..++|.+|.+++.+|++. .|..
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 4566788999998888776643322221 12588999999999999999999999999998 7653
No 290
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.41 E-value=44 Score=37.61 Aligned_cols=87 Identities=11% Similarity=-0.042 Sum_probs=59.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCc-------------------
Q 008244 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI-NLDK------------------- 529 (573)
Q Consensus 470 ~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al-~l~p------------------- 529 (573)
....+...+.++-|.+ .+...|.++..-|-+|.||+.+|++++|..+|++|- .+..
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 5566777888776543 567888888888899999999999999999999863 1211
Q ss_pred -Cc--HHHHHH-HHHHHHHHHHHHHHHHHhhcccc
Q 008244 530 -KV--RLICAE-AQQERCLDITRRQLKIFHMHWSW 560 (573)
Q Consensus 530 -~~--~~~~~~-~~~~~~~~~~~~al~~~~~~~~~ 560 (573)
+. ..||.+ ..+.+..+.++-.++.-..+.+.
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 00 113333 45666666677776666666653
No 291
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=37.16 E-value=46 Score=24.13 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 502 SNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 502 ~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
..+|..+...|++++|+.++-+|+...|+=
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 346888899999999999999999999884
No 292
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=36.18 E-value=75 Score=32.17 Aligned_cols=31 Identities=16% Similarity=-0.066 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 497 NATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 497 ~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
...++.-+|.+|+.+++|++|++.+++++..
T Consensus 189 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 4678889999999999999999999999864
No 293
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=33.49 E-value=1.1e+02 Score=29.82 Aligned_cols=88 Identities=17% Similarity=0.126 Sum_probs=53.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhc-----CCCHH
Q 008244 427 DRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAY--KDKQWLKAISFYTEAIKLN-----GNNAT 499 (573)
Q Consensus 427 d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~Ai~~y~~ai~~~-----p~~~~ 499 (573)
...+..+-+.+.-.+.+...... -+.++-++|...- .......++..|.+||... -.+.-
T Consensus 231 s~El~~LQq~LLWLLyD~GhL~r-------------YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvY 297 (472)
T 3re2_A 231 SIQLSQLQQELLWLLYDMGHIKT-------------YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIY 297 (472)
T ss_dssp CHHHHHHHHHHHHHHHHTTTTTT-------------CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSH
T ss_pred hHHHHHHHHHHHHHHHhccchhh-------------CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCcc
Confidence 34455555665555554332221 2344444544332 2222244788888888753 23445
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 500 YYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 500 ~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
-|..+|-+|++.+++.||++.+-.|-..
T Consensus 298 PYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 298 PYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 5677888999999999999998887554
No 294
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=33.46 E-value=82 Score=31.95 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 496 ~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
+...++.-+|.+|+-+++|++|++.+++++..
T Consensus 194 tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 194 NRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 34688889999999999999999999999874
No 295
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=33.27 E-value=90 Score=27.65 Aligned_cols=34 Identities=21% Similarity=0.096 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 498 ~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
..+++.+|..++..++|.+|.+++.+|++..|..
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 5788999999999999999999999999998864
No 296
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=32.27 E-value=93 Score=31.90 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 496 ~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
+...++.-+|.+|+.+++|++|+..+++++..
T Consensus 201 tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 201 DNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34678899999999999999999999999975
No 297
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=31.64 E-value=72 Score=23.87 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCcCcH-HHHHHHHHHHHHHHHHH
Q 008244 481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI-------NLDKKVR-LICAEAQQERCLDITRR 549 (573)
Q Consensus 481 ~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al-------~l~p~~~-~~~~~~~~~~~~~~~~~ 549 (573)
..|+...++|++. -+.|+|++|+..|..++ +..|+.. .-..+.++..++.+.+.
T Consensus 14 ~~A~~lv~~Ave~---------------D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~RAE~ 75 (86)
T 4a5x_A 14 TAAATVLKRAVEL---------------DSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAEN 75 (86)
T ss_dssp HHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------------HHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655 45666666666666555 4555542 22234455555555443
No 298
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=31.25 E-value=84 Score=31.99 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008244 497 NATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (573)
Q Consensus 497 ~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~ 528 (573)
...++.-+|.+|+-+++|++|++.+++++...
T Consensus 201 k~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 232 (477)
T 3mcx_A 201 YWAAQALLSRVYLNMGEYQKAYDAATDVIKNN 232 (477)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence 46788899999999999999999999999753
No 299
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.95 E-value=44 Score=34.44 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=39.2
Q ss_pred hhcCCCCCCccChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 008244 449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 497 (573)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~ 497 (573)
.+..++....++.+.+.-++-.|..+.-+++|.+|.+++.+|+...|.+
T Consensus 255 sk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 255 SKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred hcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 3344444445566778888899999999999999999999999988765
No 300
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=29.12 E-value=1.4e+02 Score=22.70 Aligned_cols=57 Identities=9% Similarity=-0.122 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCC----HHHHHHH--HHHHHHcCCHHHHHHHHHHHHH
Q 008244 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNR--AAAYLESGSFLQAEADCTKAIN 526 (573)
Q Consensus 468 ~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~----~~~~~n~--a~~~~~l~~~~~Al~~~~~al~ 526 (573)
+..|..+|+.|+|=+|-+.++..-...|.. ...+.+. |..+.+.|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 457888999999999999999988887543 1233333 4444567777 9999999877
No 301
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=28.86 E-value=1.5e+02 Score=27.48 Aligned_cols=46 Identities=15% Similarity=0.037 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHh----cCCCH---HHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 008244 481 LKAISFYTEAIKL----NGNNA---TYYSNRAAAYLE-SGSFLQAEADCTKAIN 526 (573)
Q Consensus 481 ~~Ai~~y~~ai~~----~p~~~---~~~~n~a~~~~~-l~~~~~Al~~~~~al~ 526 (573)
+.|.+.|++|+++ .|.++ .+..|.+..|+. +++.++|++.+++|+.
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5677778777764 55565 455666666665 8999999998888875
No 302
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=28.08 E-value=1.6e+02 Score=26.80 Aligned_cols=46 Identities=20% Similarity=0.085 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHH-----hcCCCH---HHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 008244 481 LKAISFYTEAIK-----LNGNNA---TYYSNRAAAYLE-SGSFLQAEADCTKAIN 526 (573)
Q Consensus 481 ~~Ai~~y~~ai~-----~~p~~~---~~~~n~a~~~~~-l~~~~~Al~~~~~al~ 526 (573)
+.|.+.|++|++ +.|.++ .+..|.+..|+. +++.++|++.+++|+.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455556666653 567776 455666666665 8999999998888765
No 303
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.65 E-value=90 Score=24.83 Aligned_cols=30 Identities=23% Similarity=0.186 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~ 492 (573)
.+-.+.+.|...-..|+-++|+++|++.|+
T Consensus 21 ~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 21 KAFLFVNKGLNTDELGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 355566666666667887888887777664
No 304
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=27.38 E-value=2.1e+02 Score=27.33 Aligned_cols=109 Identities=12% Similarity=0.036 Sum_probs=55.1
Q ss_pred HHHhhcCCCCEEEEcCCCCCCCCCCCCCCChHHHHHhhhhhhccccccCCceeeecCccC-----CCCCceeEEEeccCC
Q 008244 352 AISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-----DKCPTSVSFIARHGG 426 (573)
Q Consensus 352 ~~~~~~~~~DvLl~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-----~glPvGlq~~~~~~~ 426 (573)
.+.+++...|++|+|.......-.-+ ..+....+ +-.+|+|+|+-+.+.. +| .|+- -...+
T Consensus 265 ~~~~~~~~ad~~v~ps~~~~~~~~~e--~~~~~~~E--------a~a~G~PvI~~~~~~~~e~i~~~--~g~~--~~~~d 330 (394)
T 3okp_A 265 DMINTLAAADIFAMPARTRGGGLDVE--GLGIVYLE--------AQACGVPVIAGTSGGAPETVTPA--TGLV--VEGSD 330 (394)
T ss_dssp HHHHHHHHCSEEEECCCCBGGGTBCC--SSCHHHHH--------HHHTTCCEEECSSTTGGGGCCTT--TEEE--CCTTC
T ss_pred HHHHHHHhCCEEEecCcccccccccc--ccCcHHHH--------HHHcCCCEEEeCCCChHHHHhcC--CceE--eCCCC
Confidence 44556677999999987511000000 00111111 2257999999887643 23 3433 23333
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhc
Q 008244 427 DRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLN 494 (573)
Q Consensus 427 d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~Ai~~y~~ai~~~ 494 (573)
.+ .++..++..+. +++....+.+.+..+.++ =.++...+.|.+.++.-
T Consensus 331 ~~---~l~~~i~~l~~-----------------~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 379 (394)
T 3okp_A 331 VD---KLSELLIELLD-----------------DPIRRAAMGAAGRAHVEAEWSWEIMGERLTNILQSE 379 (394)
T ss_dssp HH---HHHHHHHHHHT-----------------CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHSC
T ss_pred HH---HHHHHHHHHHh-----------------CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 33 34444443332 223344455555555444 36777777777777643
No 305
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=26.83 E-value=67 Score=37.01 Aligned_cols=51 Identities=16% Similarity=0.082 Sum_probs=40.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008244 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524 (573)
Q Consensus 470 ~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~Al~~~~~a 524 (573)
....+.+.++++.|.+ .+...|.++...+-+|.||+.+|++++|.++|++|
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3445667777766544 45677888888899999999999999999999887
No 306
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=25.77 E-value=1.4e+02 Score=22.36 Aligned_cols=27 Identities=7% Similarity=0.044 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008244 462 QSAEIAKEKGNQAYKDKQWLKAISFYT 488 (573)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~~~~Ai~~y~ 488 (573)
+.+..|.+-|.-++++|++..|+.++.
T Consensus 37 ~mA~~Y~~Da~~fl~kGD~v~Ala~is 63 (87)
T 2pmr_A 37 ERALNYRDDSVYYLEKGDHITSFGCIT 63 (87)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456667777777777777777777654
No 307
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=24.28 E-value=16 Score=33.83 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~ 493 (573)
.+.+..+..+|..+-+.|+|++|+.+|.++|+.
T Consensus 20 ~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~ 52 (257)
T 2ymb_A 20 STAAATVLKRAVELDSESRYPQALVCYQEGIDL 52 (257)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345667788888888889999999999888864
No 308
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=24.27 E-value=2e+02 Score=26.59 Aligned_cols=46 Identities=20% Similarity=0.114 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHH-----hcCCCH---HHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 008244 481 LKAISFYTEAIK-----LNGNNA---TYYSNRAAAYLE-SGSFLQAEADCTKAIN 526 (573)
Q Consensus 481 ~~Ai~~y~~ai~-----~~p~~~---~~~~n~a~~~~~-l~~~~~Al~~~~~al~ 526 (573)
+.|.+.|++|++ +.|.++ .+..|.+..|+. +++.++|++.+++|+.
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456666666664 567776 455666666665 8999999998887764
No 309
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=24.02 E-value=2.6e+02 Score=31.66 Aligned_cols=70 Identities=3% Similarity=-0.131 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC--cCcH
Q 008244 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGS-FLQAEADCTKAINLD--KKVR 532 (573)
Q Consensus 463 ~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~-p~~~~~~~n~a~~~~~l~~-~~~Al~~~~~al~l~--p~~~ 532 (573)
+...|.-+-+.|.+.|++++|++.|++-.+.. .-|...|+.+=.|+.+.|+ .++|.+.+++..+.. |+..
T Consensus 164 dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~v 237 (1134)
T 3spa_A 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237 (1134)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHH
T ss_pred CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChh
Confidence 37789999999999999999999999988764 2367777888889999998 578999999987754 6643
No 310
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=23.55 E-value=72 Score=24.44 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=26.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Q 008244 502 SNRAAAYLESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 502 ~n~a~~~~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
..+|..++..|+++.|+.+|-+|+...|+=
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 346888899999999999999999998873
No 311
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=23.18 E-value=2.2e+02 Score=26.07 Aligned_cols=46 Identities=20% Similarity=0.127 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHH-----hcCCCH---HHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 008244 481 LKAISFYTEAIK-----LNGNNA---TYYSNRAAAYLE-SGSFLQAEADCTKAIN 526 (573)
Q Consensus 481 ~~Ai~~y~~ai~-----~~p~~~---~~~~n~a~~~~~-l~~~~~Al~~~~~al~ 526 (573)
+.|.+.|++|.+ +.|.++ .+-.|.+..|+. +++.++|++.+++|+.
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455556666553 567776 455666666655 8999999998887754
No 312
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=28.64 E-value=18 Score=38.98 Aligned_cols=54 Identities=13% Similarity=0.046 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQA 517 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~~~~~~~n~a~~~~~l~~~~~A 517 (573)
+.+..+++...+.+|+|+-|.+..+.++..+|++..+..-++.+|.+++.-.+.
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 345667788888999999999999999999999999999999999998866554
No 313
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=22.70 E-value=2.3e+02 Score=26.08 Aligned_cols=46 Identities=20% Similarity=0.085 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHH-----hcCCCH---HHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 008244 481 LKAISFYTEAIK-----LNGNNA---TYYSNRAAAYLE-SGSFLQAEADCTKAIN 526 (573)
Q Consensus 481 ~~Ai~~y~~ai~-----~~p~~~---~~~~n~a~~~~~-l~~~~~Al~~~~~al~ 526 (573)
+.|.+.|++|.+ +.|.++ .+-.|.+.-|+. +++.++|++.+++|+.
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445556666554 567776 455666666665 7999999998887754
No 314
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=22.62 E-value=4.3e+02 Score=23.83 Aligned_cols=67 Identities=18% Similarity=0.215 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhcCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCcCc
Q 008244 464 AEIAKEKGNQAYKDKQWLKAISFYTEAI--KLNGNNATYYSNRAAAY--LESGSFLQAEADCTKAINLDKKV 531 (573)
Q Consensus 464 ~~~~~~~g~~~~~~~~~~~Ai~~y~~ai--~~~p~~~~~~~n~a~~~--~~l~~~~~Al~~~~~al~l~p~~ 531 (573)
...+.+......+..+ ..|+++|..|| +.+|-++.-..+.-.-| ...++=...+..|+.+...||.-
T Consensus 88 ~etH~qRV~a~LNerr-r~Ale~y~~AL~~q~~pP~~~~Vl~aLk~yiRae~KDR~Htl~hy~Hl~~~dpe~ 158 (239)
T 3k66_A 88 EAVHEERVQAMLNEKK-RDATHDYRQALATHVNKPNKHSVLQSLKAYIRAEEKDRMHTLNRYRHLLKADSKE 158 (239)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccCHHH
Confidence 5566666666665444 89999999999 56566653222222222 23445667888999999999874
No 315
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=22.46 E-value=2.3e+02 Score=25.71 Aligned_cols=46 Identities=20% Similarity=0.053 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHH-----hcCCCH---HHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 008244 481 LKAISFYTEAIK-----LNGNNA---TYYSNRAAAYL-ESGSFLQAEADCTKAIN 526 (573)
Q Consensus 481 ~~Ai~~y~~ai~-----~~p~~~---~~~~n~a~~~~-~l~~~~~Al~~~~~al~ 526 (573)
+.|.+.|++|.+ +.|.++ .+..|.+..|+ -+++.++|++.+++|+.
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666654 567776 44566666665 47999999998887754
No 316
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=21.96 E-value=2.4e+02 Score=27.99 Aligned_cols=88 Identities=10% Similarity=0.028 Sum_probs=53.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccChHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhc-----CCCHH
Q 008244 427 DRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYK--DKQWLKAISFYTEAIKLN-----GNNAT 499 (573)
Q Consensus 427 d~~ll~~a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~Ai~~y~~ai~~~-----p~~~~ 499 (573)
-..+..+-+.+-..+.+...... -+.++-++|...-- ......+++.|++||... -...-
T Consensus 238 s~el~~lQq~LLWlLyd~Ghl~~-------------YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvY 304 (489)
T 4gq4_A 238 SLELLQLQQKLLWLLYDLGHLER-------------YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIY 304 (489)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTT-------------CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSH
T ss_pred HHHHHHHHHHHHHHHHhccchhh-------------cchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCccc
Confidence 45566666666666655433221 13344444443321 111234667788888642 33456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 500 YYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 500 ~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
-|..+|-++++.++|.+|++.+-+|-..
T Consensus 305 PYtYlgG~~~R~~~~~eAl~~wa~aa~V 332 (489)
T 4gq4_A 305 PYMYLAGYHCRNRNVREALQAWADTATV 332 (489)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ceeecchHHHHhhhHHHHHHHhhhhhhh
Confidence 6777899999999999999999887553
No 317
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=21.59 E-value=79 Score=23.21 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=23.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 501 YSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 501 ~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
...+|.=|..+|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456777888899999999999999874
No 318
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=21.52 E-value=1.7e+02 Score=30.04 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 497 NATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 497 ~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
...++.-+|.+|+..++|++|++.+++++..
T Consensus 181 k~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 181 KGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578889999999999999999999999864
No 319
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=21.27 E-value=1.5e+02 Score=29.35 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008244 482 KAISFYTEAIKLN-----GNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527 (573)
Q Consensus 482 ~Ai~~y~~ai~~~-----p~~~~~~~n~a~~~~~l~~~~~Al~~~~~al~l 527 (573)
.++..|.+||... -.+.--|..+|-+|++.++|.+|++.+-.|-..
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 4788888888652 234556677888999999999999988877543
No 320
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.59 E-value=89 Score=31.31 Aligned_cols=68 Identities=7% Similarity=-0.002 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008244 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--N----ATYYSNRAAAYLESGSFLQAEADCTKAINLD 528 (573)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~~~~Ai~~y~~ai~~~p~--~----~~~~~n~a~~~~~l~~~~~Al~~~~~al~l~ 528 (573)
....+.+......++..++|..+...++++-.+... + ..+....|..++..++|.+|.+.|..++.-.
T Consensus 165 ~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 165 GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 356788888999999999999999999998765322 2 2455566778888999999999998876543
No 321
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=20.27 E-value=2.8e+02 Score=24.95 Aligned_cols=50 Identities=14% Similarity=-0.052 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 008244 477 DKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLE-SGSFLQAEADCTKAIN 526 (573)
Q Consensus 477 ~~~~~~Ai~~y~~ai~~-----~p~~---~~~~~n~a~~~~~-l~~~~~Al~~~~~al~ 526 (573)
.|+-+.|...|++|.++ .|.+ -.+-.|.+..|+. +++.++|.+.+++|+.
T Consensus 138 ~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 138 LCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44477888888888764 3444 4667777777765 8899999999999965
Done!