Query 008246
Match_columns 572
No_of_seqs 518 out of 2741
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 21:22:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02944 OxaA-like protein pre 100.0 1.4E-43 3.1E-48 352.1 16.3 208 103-333 40-253 (255)
2 PRK00145 putative inner membra 100.0 2.2E-42 4.7E-47 337.6 18.5 194 114-329 23-218 (223)
3 PRK01622 OxaA-like protein pre 100.0 2.5E-40 5.4E-45 329.4 17.9 199 104-324 42-251 (256)
4 PF02096 60KD_IMP: 60Kd inner 100.0 4.5E-40 9.7E-45 318.3 15.9 188 121-323 2-196 (198)
5 PRK02463 OxaA-like protein pre 100.0 5.3E-40 1.2E-44 332.6 16.9 212 103-337 41-267 (307)
6 TIGR03592 yidC_oxa1_cterm memb 100.0 7.3E-40 1.6E-44 311.2 16.3 179 121-322 1-181 (181)
7 PRK01318 membrane protein inse 100.0 1.1E-39 2.4E-44 352.7 16.8 203 98-326 298-510 (521)
8 PRK01001 putative inner membra 100.0 2E-39 4.2E-44 351.0 16.4 200 107-324 562-778 (795)
9 PRK03449 putative inner membra 100.0 1.9E-37 4.1E-42 312.8 15.4 218 98-322 3-268 (304)
10 COG0706 YidC Preprotein transl 100.0 1.4E-36 3.1E-41 311.8 18.4 207 98-327 86-300 (314)
11 PRK02201 putative inner membra 100.0 2.2E-36 4.8E-41 310.1 16.6 218 101-329 109-347 (357)
12 PRK01315 putative inner membra 100.0 6.8E-36 1.5E-40 304.2 17.1 215 100-322 11-256 (329)
13 PRK00247 putative inner membra 100.0 2.8E-34 6E-39 299.7 17.8 223 100-332 5-280 (429)
14 KOG1239 Inner membrane protein 100.0 1.1E-30 2.4E-35 271.8 18.1 220 97-337 77-304 (372)
15 PRK02654 putative inner membra 100.0 2E-27 4.3E-32 235.8 16.7 104 103-214 9-119 (375)
16 KOG4626 O-linked N-acetylgluco 99.7 9.3E-17 2E-21 169.4 16.8 174 356-549 307-492 (966)
17 KOG4626 O-linked N-acetylgluco 99.7 3.4E-17 7.3E-22 172.7 13.5 181 357-559 274-468 (966)
18 COG3063 PilF Tfp pilus assembl 99.6 9.9E-15 2.1E-19 139.0 16.1 147 369-555 35-181 (250)
19 COG3063 PilF Tfp pilus assembl 99.6 6.5E-15 1.4E-19 140.2 11.4 173 324-548 36-208 (250)
20 KOG1126 DNA-binding cell divis 99.6 7E-15 1.5E-19 157.6 9.0 177 359-555 411-599 (638)
21 PRK12370 invasion protein regu 99.5 3E-13 6.5E-18 150.9 18.1 151 359-550 328-478 (553)
22 PRK15359 type III secretion sy 99.5 7.2E-13 1.6E-17 121.6 15.6 127 385-556 9-135 (144)
23 KOG1126 DNA-binding cell divis 99.5 1.2E-13 2.6E-18 148.2 10.6 170 359-548 445-626 (638)
24 TIGR00990 3a0801s09 mitochondr 99.5 8.5E-13 1.8E-17 149.3 17.8 145 360-546 356-500 (615)
25 PRK11189 lipoprotein NlpI; Pro 99.5 2.7E-12 5.8E-17 132.1 19.6 172 359-549 88-273 (296)
26 PRK09782 bacteriophage N4 rece 99.5 1.6E-12 3.4E-17 152.0 18.4 162 369-551 542-715 (987)
27 PRK12370 invasion protein regu 99.4 1.6E-12 3.5E-17 145.0 17.7 148 359-548 285-442 (553)
28 PRK10370 formate-dependent nit 99.4 2E-12 4.4E-17 125.0 15.2 130 382-553 52-184 (198)
29 KOG1155 Anaphase-promoting com 99.4 7.2E-13 1.6E-17 136.8 12.4 161 361-541 322-494 (559)
30 TIGR00990 3a0801s09 mitochondr 99.4 3E-12 6.5E-17 144.9 18.8 145 365-551 327-471 (615)
31 TIGR02521 type_IV_pilW type IV 99.4 7E-12 1.5E-16 121.3 18.0 162 369-550 31-206 (234)
32 PRK15179 Vi polysaccharide bio 99.4 5.4E-12 1.2E-16 142.4 18.9 139 365-545 82-220 (694)
33 KOG1155 Anaphase-promoting com 99.4 3.7E-12 8E-17 131.6 15.3 129 359-499 354-494 (559)
34 TIGR02521 type_IV_pilW type IV 99.4 1.8E-11 3.8E-16 118.5 18.7 132 402-551 30-173 (234)
35 PRK15174 Vi polysaccharide exp 99.4 1.2E-11 2.6E-16 140.6 18.7 146 359-546 236-385 (656)
36 PRK15359 type III secretion sy 99.4 9.2E-12 2E-16 114.2 13.7 104 359-499 17-120 (144)
37 PRK15174 Vi polysaccharide exp 99.4 2.3E-11 4.9E-16 138.4 19.1 74 359-432 100-173 (656)
38 TIGR03302 OM_YfiO outer membra 99.3 5.6E-11 1.2E-15 117.7 18.4 157 363-546 27-199 (235)
39 TIGR02552 LcrH_SycD type III s 99.3 3.6E-11 7.8E-16 108.3 15.5 124 390-555 4-127 (135)
40 PRK11189 lipoprotein NlpI; Pro 99.3 3.4E-11 7.3E-16 123.9 16.6 131 369-542 64-194 (296)
41 PRK10370 formate-dependent nit 99.3 4.9E-11 1.1E-15 115.4 14.5 113 359-505 63-178 (198)
42 PRK09782 bacteriophage N4 rece 99.3 1E-10 2.2E-15 136.9 18.3 175 359-555 500-685 (987)
43 PRK11447 cellulose synthase su 99.3 1.3E-10 2.9E-15 140.4 18.6 144 373-551 273-423 (1157)
44 PRK11447 cellulose synthase su 99.2 1.3E-10 2.9E-15 140.4 18.3 173 359-548 293-496 (1157)
45 PRK11788 tetratricopeptide rep 99.2 3.9E-10 8.5E-15 119.8 17.8 139 370-550 181-319 (389)
46 KOG0547 Translocase of outer m 99.2 1.1E-10 2.5E-15 121.4 12.8 144 360-545 351-494 (606)
47 PRK15363 pathogenicity island 99.2 2.1E-10 4.6E-15 104.8 13.1 102 366-501 32-133 (157)
48 TIGR03302 OM_YfiO outer membra 99.2 4.1E-10 8.9E-15 111.5 16.4 155 369-545 70-235 (235)
49 PRK11788 tetratricopeptide rep 99.2 9.1E-10 2E-14 117.0 19.8 168 359-546 59-247 (389)
50 TIGR02917 PEP_TPR_lipo putativ 99.2 5.2E-10 1.1E-14 129.9 19.4 158 368-547 21-193 (899)
51 PF13429 TPR_15: Tetratricopep 99.2 5.9E-11 1.3E-15 121.0 9.3 134 367-542 144-277 (280)
52 TIGR02552 LcrH_SycD type III s 99.2 3.3E-10 7.2E-15 102.0 12.0 110 357-500 5-114 (135)
53 TIGR02917 PEP_TPR_lipo putativ 99.1 2E-09 4.2E-14 125.1 20.8 167 361-547 151-329 (899)
54 KOG1125 TPR repeat-containing 99.1 3.2E-10 6.9E-15 120.5 12.6 171 359-552 309-503 (579)
55 KOG0547 Translocase of outer m 99.1 6.3E-10 1.4E-14 115.9 14.0 173 359-551 384-575 (606)
56 KOG0553 TPR repeat-containing 99.1 5.1E-10 1.1E-14 111.0 12.7 103 369-509 81-183 (304)
57 KOG1125 TPR repeat-containing 99.1 3.9E-10 8.4E-15 119.9 11.1 176 316-545 309-530 (579)
58 KOG1173 Anaphase-promoting com 99.1 7.6E-10 1.7E-14 117.2 13.2 151 370-555 381-531 (611)
59 COG5010 TadD Flp pilus assembl 99.1 2.3E-09 4.9E-14 104.6 15.4 136 362-539 93-228 (257)
60 PLN02789 farnesyltranstransfer 99.1 3.4E-09 7.4E-14 109.7 16.5 151 360-552 28-181 (320)
61 COG5010 TadD Flp pilus assembl 99.1 5.2E-09 1.1E-13 102.1 16.5 151 361-554 59-209 (257)
62 PRK10153 DNA-binding transcrip 99.1 3.2E-09 6.9E-14 116.8 16.6 151 363-555 333-494 (517)
63 PRK10049 pgaA outer membrane p 99.0 2.9E-09 6.4E-14 123.4 16.3 142 360-545 40-181 (765)
64 PF13429 TPR_15: Tetratricopep 99.0 1.4E-09 2.9E-14 110.9 11.9 150 368-559 109-260 (280)
65 KOG0553 TPR repeat-containing 99.0 2.2E-09 4.7E-14 106.6 12.7 80 358-442 104-183 (304)
66 PRK15363 pathogenicity island 99.0 5.3E-09 1.1E-13 95.7 14.2 121 393-555 24-148 (157)
67 COG4783 Putative Zn-dependent 99.0 9E-09 2E-13 108.0 17.5 148 366-555 303-450 (484)
68 PRK10049 pgaA outer membrane p 99.0 8.3E-09 1.8E-13 119.7 19.2 145 364-551 10-154 (765)
69 PLN03088 SGT1, suppressor of 99.0 3.8E-09 8.3E-14 111.4 14.7 114 371-526 4-117 (356)
70 PLN02789 farnesyltranstransfer 99.0 5.8E-09 1.3E-13 108.0 15.7 152 359-552 61-222 (320)
71 KOG0550 Molecular chaperone (D 99.0 1.1E-09 2.3E-14 112.3 9.7 168 361-571 195-374 (486)
72 KOG1173 Anaphase-promoting com 99.0 5.4E-09 1.2E-13 110.9 15.2 175 361-548 304-490 (611)
73 KOG1129 TPR repeat-containing 99.0 6.4E-10 1.4E-14 110.7 6.9 169 360-548 281-464 (478)
74 COG4235 Cytochrome c biogenesi 99.0 8.4E-09 1.8E-13 103.0 14.6 131 386-555 139-269 (287)
75 PF09976 TPR_21: Tetratricopep 98.9 2.8E-08 6.1E-13 91.1 15.2 131 370-540 12-145 (145)
76 PF13414 TPR_11: TPR repeat; P 98.9 2.6E-09 5.5E-14 84.7 7.2 65 368-432 2-67 (69)
77 TIGR00540 hemY_coli hemY prote 98.9 4.3E-08 9.3E-13 105.6 18.5 218 302-547 56-297 (409)
78 PRK15179 Vi polysaccharide bio 98.9 2.5E-08 5.5E-13 112.9 17.0 134 379-554 59-195 (694)
79 PF13432 TPR_16: Tetratricopep 98.9 3E-09 6.5E-14 83.3 6.7 64 373-441 1-64 (65)
80 PRK02603 photosystem I assembl 98.9 1.7E-08 3.8E-13 95.3 13.3 91 361-463 27-120 (172)
81 PRK10747 putative protoheme IX 98.9 4.8E-08 1E-12 104.8 18.3 177 359-548 142-363 (398)
82 PRK14574 hmsH outer membrane p 98.9 1.6E-08 3.5E-13 116.5 15.5 168 365-555 30-211 (822)
83 KOG0624 dsRNA-activated protei 98.9 8.2E-08 1.8E-12 96.5 18.0 176 358-550 61-260 (504)
84 KOG1840 Kinesin light chain [C 98.9 1.5E-08 3.2E-13 110.0 13.1 152 365-543 195-355 (508)
85 TIGR02795 tol_pal_ybgF tol-pal 98.9 2.2E-08 4.8E-13 87.3 12.0 100 369-499 2-104 (119)
86 PLN03088 SGT1, suppressor of 98.9 2.8E-08 6E-13 104.9 14.5 113 406-560 5-117 (356)
87 TIGR02795 tol_pal_ybgF tol-pal 98.9 5.1E-08 1.1E-12 84.9 13.9 113 403-551 2-114 (119)
88 cd05804 StaR_like StaR_like; a 98.9 4.4E-08 9.5E-13 102.9 15.8 110 397-544 108-217 (355)
89 COG2956 Predicted N-acetylgluc 98.9 6.5E-08 1.4E-12 96.7 15.7 139 369-549 180-318 (389)
90 KOG2076 RNA polymerase III tra 98.8 6.8E-08 1.5E-12 107.5 16.3 134 369-544 139-272 (895)
91 KOG2002 TPR-containing nuclear 98.8 1.3E-08 2.9E-13 113.6 10.2 186 320-555 561-758 (1018)
92 PRK14574 hmsH outer membrane p 98.8 9.9E-08 2.1E-12 110.1 17.6 141 359-546 92-232 (822)
93 PF13525 YfiO: Outer membrane 98.8 3E-07 6.5E-12 89.3 18.4 157 368-548 4-176 (203)
94 PRK10866 outer membrane biogen 98.8 3.2E-07 6.9E-12 91.6 18.6 165 367-548 30-210 (243)
95 KOG1174 Anaphase-promoting com 98.8 7.1E-08 1.5E-12 99.0 14.0 176 359-555 324-513 (564)
96 KOG1129 TPR repeat-containing 98.8 8.9E-09 1.9E-13 102.7 7.2 107 359-499 348-457 (478)
97 KOG0548 Molecular co-chaperone 98.8 7.9E-08 1.7E-12 101.8 14.4 139 375-555 304-468 (539)
98 cd00189 TPR Tetratricopeptide 98.8 6.8E-08 1.5E-12 78.3 11.2 95 371-499 2-96 (100)
99 CHL00033 ycf3 photosystem I as 98.8 1.3E-07 2.8E-12 88.8 14.2 128 383-549 13-156 (168)
100 CHL00033 ycf3 photosystem I as 98.8 1.3E-07 2.8E-12 88.8 14.1 112 368-499 34-148 (168)
101 KOG1840 Kinesin light chain [C 98.8 6.4E-08 1.4E-12 105.1 12.8 144 374-543 246-397 (508)
102 KOG2002 TPR-containing nuclear 98.7 1.8E-07 4E-12 104.8 15.8 157 360-554 224-383 (1018)
103 KOG0624 dsRNA-activated protei 98.7 5.7E-07 1.2E-11 90.5 17.7 190 360-572 180-396 (504)
104 cd05804 StaR_like StaR_like; a 98.7 4.3E-07 9.4E-12 95.3 17.9 160 365-545 2-180 (355)
105 PRK11906 transcriptional regul 98.7 3.3E-07 7.2E-12 96.8 16.1 143 362-546 243-405 (458)
106 PRK10803 tol-pal system protei 98.7 1.9E-07 4E-12 94.1 13.4 108 366-508 139-250 (263)
107 KOG0550 Molecular chaperone (D 98.7 8.6E-08 1.9E-12 98.6 10.8 154 370-549 170-323 (486)
108 cd00189 TPR Tetratricopeptide 98.7 2.8E-07 6E-12 74.7 11.8 99 405-545 2-100 (100)
109 PRK10803 tol-pal system protei 98.7 4.3E-07 9.4E-12 91.5 15.3 114 400-549 139-253 (263)
110 COG4235 Cytochrome c biogenesi 98.7 2.4E-07 5.2E-12 92.7 12.6 115 359-507 146-263 (287)
111 KOG3060 Uncharacterized conser 98.6 1.1E-06 2.3E-11 85.5 16.0 141 366-548 83-226 (289)
112 KOG2003 TPR repeat-containing 98.6 1.6E-07 3.4E-12 97.2 10.7 145 359-545 480-624 (840)
113 PF12895 Apc3: Anaphase-promot 98.6 9.6E-08 2.1E-12 78.9 7.2 82 381-497 1-84 (84)
114 PRK10747 putative protoheme IX 98.6 7.7E-07 1.7E-11 95.5 16.1 133 365-543 259-391 (398)
115 COG2956 Predicted N-acetylgluc 98.6 2.7E-06 5.8E-11 85.4 18.4 60 481-548 190-249 (389)
116 KOG2003 TPR repeat-containing 98.6 5E-07 1.1E-11 93.5 13.3 174 357-550 512-697 (840)
117 KOG4162 Predicted calmodulin-b 98.6 9.3E-07 2E-11 97.2 15.6 137 371-547 652-788 (799)
118 KOG0543 FKBP-type peptidyl-pro 98.6 7.6E-07 1.7E-11 92.1 13.8 119 406-555 211-333 (397)
119 PF12688 TPR_5: Tetratrico pep 98.6 1.1E-06 2.4E-11 77.8 12.9 61 371-431 3-66 (120)
120 PF13432 TPR_16: Tetratricopep 98.6 4E-07 8.6E-12 71.1 8.8 55 485-547 11-65 (65)
121 PRK14720 transcript cleavage f 98.5 6.9E-07 1.5E-11 102.5 13.7 142 363-543 25-179 (906)
122 TIGR00540 hemY_coli hemY prote 98.5 2.6E-06 5.7E-11 91.8 17.1 135 370-545 85-219 (409)
123 PRK15331 chaperone protein Sic 98.5 1.2E-06 2.5E-11 80.8 11.5 98 368-499 36-133 (165)
124 PF13414 TPR_11: TPR repeat; P 98.5 5.2E-07 1.1E-11 71.3 7.9 64 451-544 5-69 (69)
125 PF12688 TPR_5: Tetratrico pep 98.5 2.1E-06 4.7E-11 75.9 12.5 105 403-543 1-105 (120)
126 KOG1174 Anaphase-promoting com 98.5 2.3E-06 5E-11 88.2 14.2 162 363-546 294-471 (564)
127 COG1729 Uncharacterized protei 98.5 2.5E-06 5.5E-11 84.4 13.6 62 370-431 142-206 (262)
128 COG1729 Uncharacterized protei 98.5 1.6E-06 3.4E-11 85.9 12.1 88 406-508 144-248 (262)
129 KOG0495 HAT repeat protein [RN 98.5 3.7E-06 7.9E-11 90.9 15.3 178 360-559 541-731 (913)
130 PF09976 TPR_21: Tetratricopep 98.5 1.4E-06 3E-11 79.8 10.8 95 369-498 48-145 (145)
131 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 5.8E-07 1.3E-11 94.9 9.2 71 362-432 68-141 (453)
132 KOG0548 Molecular co-chaperone 98.5 2E-06 4.3E-11 91.4 13.1 136 361-538 350-485 (539)
133 PRK11906 transcriptional regul 98.4 3.9E-06 8.4E-11 88.9 14.6 142 359-541 282-435 (458)
134 PRK14720 transcript cleavage f 98.4 5.2E-06 1.1E-10 95.4 16.7 171 361-552 57-262 (906)
135 KOG1127 TPR repeat-containing 98.4 8E-07 1.7E-11 99.7 9.6 146 381-546 470-629 (1238)
136 PRK02603 photosystem I assembl 98.4 3.4E-06 7.5E-11 79.5 12.6 111 399-548 31-155 (172)
137 COG4783 Putative Zn-dependent 98.4 1.1E-05 2.4E-10 85.1 16.7 130 391-562 294-423 (484)
138 PF13512 TPR_18: Tetratricopep 98.4 8.6E-06 1.9E-10 73.5 13.4 123 366-508 7-132 (142)
139 PF12895 Apc3: Anaphase-promot 98.4 2.1E-06 4.6E-11 70.8 8.7 84 415-539 1-84 (84)
140 KOG1128 Uncharacterized conser 98.3 1.7E-06 3.6E-11 94.8 9.3 145 358-544 473-618 (777)
141 KOG2076 RNA polymerase III tra 98.3 1.2E-05 2.7E-10 89.8 16.2 144 361-541 165-308 (895)
142 PF13371 TPR_9: Tetratricopept 98.3 1.4E-06 3E-11 69.6 6.4 62 376-442 2-63 (73)
143 PF14938 SNAP: Soluble NSF att 98.3 9.2E-06 2E-10 83.1 13.8 144 369-543 35-185 (282)
144 PF04733 Coatomer_E: Coatomer 98.3 1.1E-05 2.4E-10 82.6 14.3 150 368-560 130-282 (290)
145 PF14938 SNAP: Soluble NSF att 98.3 7.5E-06 1.6E-10 83.7 13.0 146 373-547 78-230 (282)
146 PF14559 TPR_19: Tetratricopep 98.3 1.6E-06 3.5E-11 68.2 6.2 54 379-432 1-54 (68)
147 KOG2376 Signal recognition par 98.3 2.2E-05 4.8E-10 84.3 16.2 168 373-555 83-266 (652)
148 KOG4648 Uncharacterized conser 98.3 5.5E-06 1.2E-10 83.5 10.7 93 373-499 101-193 (536)
149 KOG1156 N-terminal acetyltrans 98.3 1.1E-05 2.3E-10 87.5 13.6 163 363-538 35-210 (700)
150 KOG4162 Predicted calmodulin-b 98.3 4.8E-06 1E-10 91.7 11.0 107 360-500 675-783 (799)
151 PRK15331 chaperone protein Sic 98.2 1.9E-05 4.2E-10 72.8 12.8 118 392-552 26-143 (165)
152 PRK10866 outer membrane biogen 98.2 7.6E-05 1.6E-09 74.6 18.2 156 360-538 57-237 (243)
153 KOG4555 TPR repeat-containing 98.2 2.1E-05 4.6E-10 69.2 11.8 100 371-500 45-144 (175)
154 KOG0495 HAT repeat protein [RN 98.2 1.9E-05 4.1E-10 85.6 13.7 175 365-555 647-859 (913)
155 KOG3060 Uncharacterized conser 98.2 4.4E-05 9.5E-10 74.5 14.8 141 371-553 54-194 (289)
156 KOG4234 TPR repeat-containing 98.2 2.6E-05 5.6E-10 73.5 12.7 116 405-557 97-212 (271)
157 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 6.4E-06 1.4E-10 87.2 9.4 72 398-500 70-141 (453)
158 PF13424 TPR_12: Tetratricopep 98.2 9.4E-06 2E-10 65.7 8.2 73 400-499 2-74 (78)
159 KOG1156 N-terminal acetyltrans 98.2 1.5E-05 3.3E-10 86.3 11.9 137 370-548 8-144 (700)
160 COG4700 Uncharacterized protei 98.1 7.6E-05 1.7E-09 69.7 14.7 139 368-547 88-231 (251)
161 PRK10153 DNA-binding transcrip 98.1 1.2E-05 2.6E-10 88.7 11.0 111 360-506 367-487 (517)
162 KOG1128 Uncharacterized conser 98.1 1.9E-05 4E-10 86.8 11.8 135 369-546 424-586 (777)
163 PF14559 TPR_19: Tetratricopep 98.1 4.3E-06 9.2E-11 65.7 5.2 63 482-552 2-64 (68)
164 PF13424 TPR_12: Tetratricopep 98.1 9.6E-06 2.1E-10 65.7 7.0 70 450-542 6-75 (78)
165 PF06552 TOM20_plant: Plant sp 98.1 1.5E-05 3.2E-10 74.3 8.9 67 385-463 7-83 (186)
166 PF12569 NARP1: NMDA receptor- 98.1 8.3E-05 1.8E-09 81.8 16.1 139 369-543 194-335 (517)
167 PF13431 TPR_17: Tetratricopep 98.1 3.2E-06 7E-11 57.3 3.2 34 391-424 1-34 (34)
168 COG3071 HemY Uncharacterized e 98.1 0.00042 9E-09 71.7 19.9 170 366-548 150-363 (400)
169 COG4105 ComL DNA uptake lipopr 98.1 0.00024 5.2E-09 70.0 17.4 156 365-547 30-201 (254)
170 KOG4648 Uncharacterized conser 98.1 2.3E-05 5.1E-10 79.1 10.5 85 406-532 100-184 (536)
171 KOG1130 Predicted G-alpha GTPa 98.1 3.2E-06 6.9E-11 87.0 4.3 162 372-543 98-305 (639)
172 KOG0543 FKBP-type peptidyl-pro 98.1 4.4E-05 9.5E-10 79.3 12.7 132 371-544 210-357 (397)
173 PF13525 YfiO: Outer membrane 98.1 5.9E-05 1.3E-09 73.3 12.9 110 402-547 4-124 (203)
174 PF13428 TPR_14: Tetratricopep 98.0 5.3E-06 1.2E-10 59.7 4.1 44 369-412 1-44 (44)
175 COG4700 Uncharacterized protei 98.0 0.00018 3.8E-09 67.3 14.5 132 376-547 63-194 (251)
176 COG4785 NlpI Lipoprotein NlpI, 98.0 0.00013 2.9E-09 69.6 13.9 168 360-544 90-268 (297)
177 PF12569 NARP1: NMDA receptor- 98.0 0.00035 7.5E-09 77.0 19.4 59 481-547 204-262 (517)
178 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00011 2.4E-09 78.1 14.8 116 379-539 179-294 (395)
179 KOG1130 Predicted G-alpha GTPa 98.0 1.4E-05 2.9E-10 82.5 7.5 167 369-543 55-265 (639)
180 PF13512 TPR_18: Tetratricopep 98.0 0.00017 3.7E-09 65.2 13.5 112 402-549 9-135 (142)
181 PF04733 Coatomer_E: Coatomer 98.0 2E-05 4.3E-10 80.8 8.0 142 368-554 101-242 (290)
182 PLN03218 maturation of RBCL 1; 97.9 0.0003 6.5E-09 83.9 18.6 154 369-542 579-748 (1060)
183 PRK04841 transcriptional regul 97.9 0.00017 3.6E-09 85.6 15.2 147 369-543 452-603 (903)
184 PLN03081 pentatricopeptide (PP 97.8 0.00026 5.5E-09 81.7 15.1 58 371-431 261-318 (697)
185 PF13371 TPR_9: Tetratricopept 97.8 8.9E-05 1.9E-09 59.0 7.6 64 480-551 4-67 (73)
186 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00013 2.9E-09 77.4 10.8 96 369-498 200-295 (395)
187 KOG1127 TPR repeat-containing 97.8 7.2E-05 1.6E-09 84.5 9.0 167 359-543 482-660 (1238)
188 COG2976 Uncharacterized protei 97.8 0.0016 3.6E-08 61.5 16.4 135 371-546 55-192 (207)
189 KOG4555 TPR repeat-containing 97.8 0.00054 1.2E-08 60.5 12.1 105 406-548 46-150 (175)
190 KOG3785 Uncharacterized conser 97.7 0.00049 1.1E-08 70.1 13.4 152 373-548 61-220 (557)
191 PF04184 ST7: ST7 protein; In 97.7 0.00044 9.6E-09 73.6 13.5 141 373-539 172-321 (539)
192 PLN03218 maturation of RBCL 1; 97.7 0.00083 1.8E-08 80.1 16.9 158 368-545 471-648 (1060)
193 COG3118 Thioredoxin domain-con 97.7 0.00079 1.7E-08 67.5 13.4 136 369-546 134-269 (304)
194 PLN03081 pentatricopeptide (PP 97.6 0.0012 2.6E-08 76.2 16.8 63 369-431 290-353 (697)
195 COG4785 NlpI Lipoprotein NlpI, 97.6 0.00035 7.7E-09 66.8 9.6 83 369-463 65-147 (297)
196 PRK04841 transcriptional regul 97.6 0.001 2.2E-08 78.9 15.9 143 369-542 409-560 (903)
197 KOG1941 Acetylcholine receptor 97.6 0.00043 9.4E-09 70.7 10.6 155 370-552 123-285 (518)
198 KOG2796 Uncharacterized conser 97.6 0.00092 2E-08 65.7 12.1 140 371-546 179-319 (366)
199 PF10300 DUF3808: Protein of u 97.6 0.00093 2E-08 73.2 13.8 125 381-542 245-376 (468)
200 COG0457 NrfG FOG: TPR repeat [ 97.6 0.003 6.4E-08 58.7 15.5 143 365-545 91-234 (291)
201 PF06552 TOM20_plant: Plant sp 97.6 0.0002 4.3E-09 66.9 6.9 79 359-442 15-114 (186)
202 KOG2376 Signal recognition par 97.5 0.00067 1.4E-08 73.3 11.7 130 370-545 13-142 (652)
203 KOG4340 Uncharacterized conser 97.5 0.0018 3.9E-08 64.8 13.6 144 379-542 20-207 (459)
204 KOG4642 Chaperone-dependent E3 97.5 0.00043 9.4E-09 67.1 8.7 98 368-499 9-106 (284)
205 KOG1586 Protein required for f 97.5 0.0029 6.2E-08 61.4 14.1 151 369-548 73-230 (288)
206 KOG3785 Uncharacterized conser 97.4 0.00083 1.8E-08 68.5 10.3 147 377-547 30-185 (557)
207 KOG3081 Vesicle coat complex C 97.4 0.0044 9.5E-08 61.3 14.5 177 361-566 100-293 (299)
208 COG0457 NrfG FOG: TPR repeat [ 97.4 0.0072 1.5E-07 56.1 15.6 127 378-545 139-268 (291)
209 PF13428 TPR_14: Tetratricopep 97.4 0.00049 1.1E-08 49.4 5.8 42 514-555 2-43 (44)
210 PLN03077 Protein ECB2; Provisi 97.4 0.0045 9.8E-08 73.2 16.9 152 369-541 554-719 (857)
211 KOG0545 Aryl-hydrocarbon recep 97.3 0.0042 9E-08 60.6 13.2 115 404-548 179-299 (329)
212 PF00515 TPR_1: Tetratricopept 97.3 0.00035 7.5E-09 46.9 4.3 33 514-546 2-34 (34)
213 KOG4234 TPR repeat-containing 97.3 0.0027 5.8E-08 60.2 11.3 100 371-508 97-201 (271)
214 PLN03077 Protein ECB2; Provisi 97.3 0.0016 3.5E-08 77.0 12.3 150 374-548 529-692 (857)
215 PF07719 TPR_2: Tetratricopept 97.3 0.00065 1.4E-08 45.3 5.0 33 514-546 2-34 (34)
216 PF07719 TPR_2: Tetratricopept 97.2 0.00048 1E-08 46.0 3.9 29 404-432 2-30 (34)
217 PF00515 TPR_1: Tetratricopept 97.2 0.00037 8E-09 46.8 3.3 29 404-432 2-30 (34)
218 KOG1070 rRNA processing protei 97.2 0.0064 1.4E-07 71.5 14.8 156 384-551 1439-1604(1710)
219 COG4105 ComL DNA uptake lipopr 97.1 0.061 1.3E-06 53.3 19.4 160 365-548 67-239 (254)
220 COG3071 HemY Uncharacterized e 97.1 0.024 5.2E-07 59.0 16.4 134 369-543 84-217 (400)
221 KOG4642 Chaperone-dependent E3 97.1 0.0011 2.3E-08 64.4 6.1 76 357-432 32-107 (284)
222 KOG2610 Uncharacterized conser 97.0 0.011 2.3E-07 60.2 12.9 131 370-538 104-234 (491)
223 KOG1308 Hsp70-interacting prot 96.9 0.00051 1.1E-08 69.9 2.6 93 374-500 119-211 (377)
224 KOG0376 Serine-threonine phosp 96.9 0.0012 2.6E-08 70.2 4.8 102 370-506 5-106 (476)
225 KOG0551 Hsp90 co-chaperone CNS 96.8 0.011 2.5E-07 60.1 11.0 111 403-551 81-191 (390)
226 PF13181 TPR_8: Tetratricopept 96.8 0.0024 5.1E-08 42.6 4.2 33 514-546 2-34 (34)
227 KOG1070 rRNA processing protei 96.7 0.03 6.5E-07 66.1 15.0 134 371-544 1532-1665(1710)
228 COG2976 Uncharacterized protei 96.7 0.01 2.2E-07 56.2 9.4 95 370-499 90-187 (207)
229 KOG1585 Protein required for f 96.7 0.022 4.7E-07 55.8 11.6 64 369-432 31-100 (308)
230 KOG1941 Acetylcholine receptor 96.7 0.0091 2E-07 61.3 9.5 147 369-543 83-236 (518)
231 PF05843 Suf: Suppressor of fo 96.7 0.055 1.2E-06 55.2 15.3 142 371-551 3-145 (280)
232 PF03704 BTAD: Bacterial trans 96.7 0.028 6.1E-07 51.1 12.0 55 479-541 70-124 (146)
233 KOG3081 Vesicle coat complex C 96.6 0.046 1E-06 54.2 13.6 83 369-463 169-255 (299)
234 PF12968 DUF3856: Domain of Un 96.6 0.16 3.4E-06 44.5 14.9 113 404-541 8-128 (144)
235 PF03704 BTAD: Bacterial trans 96.6 0.0095 2E-07 54.2 8.2 64 369-432 62-125 (146)
236 PF04184 ST7: ST7 protein; In 96.6 0.034 7.3E-07 59.7 13.2 156 359-551 192-384 (539)
237 KOG1586 Protein required for f 96.5 0.083 1.8E-06 51.5 14.4 146 370-546 35-187 (288)
238 KOG1915 Cell cycle control pro 96.5 0.052 1.1E-06 57.7 14.0 151 391-555 310-479 (677)
239 KOG2053 Mitochondrial inherita 96.5 0.25 5.4E-06 56.4 20.0 172 363-546 37-259 (932)
240 KOG0545 Aryl-hydrocarbon recep 96.5 0.04 8.6E-07 54.0 11.7 101 369-507 178-296 (329)
241 KOG4340 Uncharacterized conser 96.4 0.017 3.8E-07 57.9 9.0 130 370-537 113-265 (459)
242 PF13281 DUF4071: Domain of un 96.4 0.045 9.8E-07 57.6 12.6 148 369-548 179-340 (374)
243 KOG1915 Cell cycle control pro 96.3 0.059 1.3E-06 57.3 12.7 164 359-545 63-239 (677)
244 PF13176 TPR_7: Tetratricopept 96.3 0.0083 1.8E-07 40.9 4.4 28 405-432 1-28 (36)
245 PF13181 TPR_8: Tetratricopept 96.2 0.0045 9.8E-08 41.2 3.0 29 404-432 2-30 (34)
246 PF13176 TPR_7: Tetratricopept 96.1 0.0093 2E-07 40.7 4.2 29 515-543 1-29 (36)
247 PF13174 TPR_6: Tetratricopept 96.1 0.0098 2.1E-07 39.1 4.0 32 515-546 2-33 (33)
248 PF13431 TPR_17: Tetratricopep 96.1 0.0051 1.1E-07 41.5 2.5 34 493-534 1-34 (34)
249 KOG2053 Mitochondrial inherita 96.0 0.12 2.5E-06 59.0 14.2 128 376-546 16-143 (932)
250 PF14853 Fis1_TPR_C: Fis1 C-te 95.9 0.022 4.8E-07 42.6 5.7 41 515-555 3-43 (53)
251 PF12968 DUF3856: Domain of Un 95.9 0.19 4.2E-06 43.9 12.1 104 373-499 13-128 (144)
252 KOG3824 Huntingtin interacting 95.9 0.015 3.2E-07 58.5 6.1 67 371-442 118-184 (472)
253 COG3898 Uncharacterized membra 95.9 0.55 1.2E-05 49.1 17.3 63 369-432 120-183 (531)
254 PF08424 NRDE-2: NRDE-2, neces 95.9 0.26 5.7E-06 51.3 15.5 162 358-543 8-184 (321)
255 KOG2047 mRNA splicing factor [ 95.8 0.43 9.2E-06 52.8 16.9 167 369-544 387-581 (835)
256 KOG0376 Serine-threonine phosp 95.7 0.018 3.9E-07 61.4 6.1 106 408-555 9-114 (476)
257 KOG2471 TPR repeat-containing 95.7 0.05 1.1E-06 58.0 9.0 157 366-548 203-370 (696)
258 KOG2047 mRNA splicing factor [ 95.6 0.24 5.1E-06 54.7 13.9 160 370-542 249-454 (835)
259 KOG2610 Uncharacterized conser 95.5 0.19 4.1E-06 51.4 12.1 58 373-430 179-236 (491)
260 PF13174 TPR_6: Tetratricopept 95.3 0.017 3.7E-07 37.9 2.8 29 404-432 1-29 (33)
261 KOG3807 Predicted membrane pro 95.3 0.67 1.5E-05 47.5 15.0 157 357-537 172-335 (556)
262 smart00028 TPR Tetratricopepti 95.3 0.032 6.9E-07 35.0 4.0 32 515-546 3-34 (34)
263 KOG0551 Hsp90 co-chaperone CNS 95.2 0.38 8.2E-06 49.3 13.1 97 369-499 81-181 (390)
264 PF09613 HrpB1_HrpK: Bacterial 95.1 0.52 1.1E-05 43.7 12.7 82 370-463 11-92 (160)
265 PF02259 FAT: FAT domain; Int 95.1 0.85 1.8E-05 47.4 16.3 64 368-431 145-212 (352)
266 PF04910 Tcf25: Transcriptiona 95.1 0.45 9.7E-06 50.4 14.1 156 362-553 33-234 (360)
267 COG0790 FOG: TPR repeat, SEL1 95.1 0.66 1.4E-05 47.3 15.1 138 369-544 73-222 (292)
268 KOG2300 Uncharacterized conser 95.0 0.51 1.1E-05 50.6 14.0 195 298-543 259-475 (629)
269 PF05843 Suf: Suppressor of fo 95.0 0.13 2.9E-06 52.4 9.7 72 361-432 27-99 (280)
270 PF14561 TPR_20: Tetratricopep 94.9 0.29 6.3E-06 40.9 9.7 45 388-432 7-51 (90)
271 PF10300 DUF3808: Protein of u 94.9 0.15 3.4E-06 55.9 10.3 92 361-463 259-354 (468)
272 PF10602 RPN7: 26S proteasome 94.8 0.31 6.7E-06 46.2 10.9 105 403-540 36-140 (177)
273 KOG1585 Protein required for f 94.7 0.7 1.5E-05 45.6 13.0 89 405-501 33-121 (308)
274 COG4649 Uncharacterized protei 94.7 2.1 4.5E-05 40.2 15.5 134 371-541 60-195 (221)
275 KOG4507 Uncharacterized conser 94.7 0.14 3E-06 55.8 8.9 120 389-548 199-318 (886)
276 PF14853 Fis1_TPR_C: Fis1 C-te 94.6 0.091 2E-06 39.3 5.3 43 370-412 2-44 (53)
277 smart00028 TPR Tetratricopepti 94.5 0.034 7.3E-07 34.9 2.6 27 405-431 3-29 (34)
278 PF10579 Rapsyn_N: Rapsyn N-te 94.3 0.29 6.3E-06 39.6 7.8 63 369-431 6-71 (80)
279 PF10602 RPN7: 26S proteasome 94.3 0.44 9.6E-06 45.1 10.6 103 369-499 36-141 (177)
280 COG4976 Predicted methyltransf 94.0 0.058 1.3E-06 52.4 4.0 56 377-432 3-58 (287)
281 KOG2300 Uncharacterized conser 93.9 1.2 2.7E-05 47.8 13.8 144 368-543 366-515 (629)
282 PF13374 TPR_10: Tetratricopep 93.9 0.13 2.8E-06 35.5 4.7 30 403-432 2-31 (42)
283 COG0790 FOG: TPR repeat, SEL1 93.8 2.5 5.5E-05 42.9 16.0 142 363-547 103-271 (292)
284 COG2909 MalT ATP-dependent tra 93.6 2.4 5.2E-05 48.8 16.4 167 369-542 458-647 (894)
285 PRK10941 hypothetical protein; 93.6 0.2 4.3E-06 50.8 7.2 69 369-442 181-249 (269)
286 KOG3617 WD40 and TPR repeat-co 93.6 0.22 4.8E-06 56.3 8.0 28 515-542 969-996 (1416)
287 KOG1550 Extracellular protein 93.5 0.92 2E-05 50.9 13.1 135 366-543 241-394 (552)
288 TIGR02561 HrpB1_HrpK type III 93.4 1.3 2.9E-05 40.4 11.3 61 371-431 12-72 (153)
289 KOG3824 Huntingtin interacting 93.4 0.36 7.9E-06 48.9 8.4 62 486-555 131-192 (472)
290 KOG2796 Uncharacterized conser 93.3 1.1 2.4E-05 44.7 11.4 103 368-508 211-319 (366)
291 PF13374 TPR_10: Tetratricopep 93.2 0.18 3.9E-06 34.7 4.5 30 514-543 3-32 (42)
292 PF09986 DUF2225: Uncharacteri 93.2 0.71 1.5E-05 45.2 10.2 93 382-499 90-193 (214)
293 COG3898 Uncharacterized membra 93.2 1.5 3.2E-05 46.1 12.6 58 374-432 235-292 (531)
294 PF13281 DUF4071: Domain of un 93.2 1.2 2.5E-05 47.2 12.2 140 364-536 136-282 (374)
295 PF14561 TPR_20: Tetratricopep 93.0 0.28 6.1E-06 41.0 6.1 72 359-430 12-85 (90)
296 PF12862 Apc5: Anaphase-promot 92.9 0.41 9E-06 40.2 7.0 56 377-432 6-70 (94)
297 PF09613 HrpB1_HrpK: Bacterial 92.8 1.6 3.4E-05 40.5 11.1 100 403-545 10-109 (160)
298 KOG3364 Membrane protein invol 92.8 1.1 2.4E-05 40.1 9.7 61 486-552 50-110 (149)
299 PF09986 DUF2225: Uncharacteri 92.8 1.2 2.6E-05 43.6 11.0 58 487-546 141-198 (214)
300 PF04781 DUF627: Protein of un 92.6 1.2 2.5E-05 38.7 9.4 57 375-431 2-72 (111)
301 KOG3617 WD40 and TPR repeat-co 92.6 0.81 1.7E-05 52.0 10.5 127 388-541 788-940 (1416)
302 PF08631 SPO22: Meiosis protei 92.6 3.7 8E-05 41.8 14.9 121 379-499 3-149 (278)
303 KOG2471 TPR repeat-containing 92.5 0.27 5.7E-06 52.7 6.3 115 363-499 234-363 (696)
304 PRK15180 Vi polysaccharide bio 92.4 0.97 2.1E-05 48.5 10.3 62 370-431 290-351 (831)
305 PF02259 FAT: FAT domain; Int 92.4 1.9 4.1E-05 44.8 12.8 131 399-559 142-304 (352)
306 PF07721 TPR_4: Tetratricopept 92.3 0.15 3.3E-06 31.9 2.8 25 404-428 2-26 (26)
307 KOG1308 Hsp70-interacting prot 92.3 0.15 3.3E-06 52.4 4.2 73 360-432 139-211 (377)
308 PF12862 Apc5: Anaphase-promot 92.0 0.49 1.1E-05 39.8 6.4 61 484-544 11-72 (94)
309 PF04910 Tcf25: Transcriptiona 90.7 4.6 0.0001 42.8 13.5 131 393-541 30-167 (360)
310 KOG4507 Uncharacterized conser 90.4 0.93 2E-05 49.7 7.9 90 361-463 205-297 (886)
311 COG3118 Thioredoxin domain-con 90.4 3.8 8.3E-05 41.6 11.8 138 359-538 158-297 (304)
312 PF10345 Cohesin_load: Cohesin 90.3 6.4 0.00014 44.8 15.2 143 368-541 58-207 (608)
313 COG2909 MalT ATP-dependent tra 90.1 5 0.00011 46.4 13.7 127 368-527 414-551 (894)
314 PF08424 NRDE-2: NRDE-2, neces 89.5 9.8 0.00021 39.6 14.7 115 389-542 5-131 (321)
315 KOG0276 Vesicle coat complex C 89.2 1.6 3.4E-05 48.2 8.5 65 358-431 630-694 (794)
316 COG3629 DnrI DNA-binding trans 89.1 1.2 2.7E-05 45.1 7.3 64 369-432 153-216 (280)
317 PF10373 EST1_DNA_bind: Est1 D 89.0 1.2 2.5E-05 44.9 7.2 44 388-431 1-44 (278)
318 KOG2581 26S proteasome regulat 88.9 17 0.00036 38.7 15.3 142 374-547 131-281 (493)
319 KOG3616 Selective LIM binding 88.6 2.5 5.3E-05 47.6 9.6 138 371-541 767-910 (1636)
320 COG3914 Spy Predicted O-linked 88.5 8.7 0.00019 42.5 13.5 132 381-550 42-179 (620)
321 PF07721 TPR_4: Tetratricopept 88.3 0.64 1.4E-05 29.0 3.1 24 515-538 3-26 (26)
322 KOG0985 Vesicle coat protein c 88.1 8.6 0.00019 45.1 13.6 43 482-540 1205-1247(1666)
323 PRK13184 pknD serine/threonine 88.0 2.9 6.3E-05 49.5 10.3 107 409-548 481-587 (932)
324 COG4976 Predicted methyltransf 87.7 0.86 1.9E-05 44.5 4.9 57 482-546 6-62 (287)
325 COG4455 ImpE Protein of avirul 87.5 9.7 0.00021 37.2 11.7 58 375-432 7-64 (273)
326 COG3914 Spy Predicted O-linked 87.4 5.7 0.00012 43.9 11.4 109 363-499 59-170 (620)
327 PF04053 Coatomer_WDAD: Coatom 87.3 2.3 5.1E-05 46.3 8.6 63 360-431 313-375 (443)
328 PF10579 Rapsyn_N: Rapsyn N-te 87.2 2.5 5.4E-05 34.3 6.4 52 486-542 21-72 (80)
329 KOG1550 Extracellular protein 86.9 9.9 0.00021 42.8 13.6 130 369-542 288-426 (552)
330 PF07079 DUF1347: Protein of u 86.4 39 0.00085 36.6 16.5 136 371-538 381-520 (549)
331 PF08631 SPO22: Meiosis protei 86.2 5.7 0.00012 40.4 10.3 109 413-547 3-121 (278)
332 PRK10941 hypothetical protein; 85.8 5.5 0.00012 40.4 9.8 55 486-548 196-250 (269)
333 TIGR02561 HrpB1_HrpK type III 85.6 12 0.00026 34.4 10.7 97 404-543 11-107 (153)
334 PF09670 Cas_Cas02710: CRISPR- 85.6 22 0.00048 37.9 14.8 63 369-431 131-197 (379)
335 KOG1839 Uncharacterized protei 85.4 5.9 0.00013 47.6 10.9 147 367-543 930-1087(1236)
336 PF07720 TPR_3: Tetratricopept 85.3 2.5 5.4E-05 28.9 4.8 32 515-546 3-36 (36)
337 PF10516 SHNi-TPR: SHNi-TPR; 84.7 1.6 3.4E-05 30.2 3.7 29 404-432 2-30 (38)
338 PF07720 TPR_3: Tetratricopept 84.6 1.7 3.7E-05 29.7 3.8 22 404-425 2-23 (36)
339 TIGR03362 VI_chp_7 type VI sec 84.5 53 0.0011 33.9 16.7 150 381-542 111-279 (301)
340 KOG0530 Protein farnesyltransf 84.2 32 0.0007 34.6 13.8 161 381-557 55-231 (318)
341 KOG1839 Uncharacterized protei 83.9 4.7 0.0001 48.4 9.4 147 369-541 973-1127(1236)
342 PF04781 DUF627: Protein of un 83.8 17 0.00037 31.5 10.5 106 409-542 2-107 (111)
343 PF07079 DUF1347: Protein of u 83.5 2.4 5.2E-05 45.4 6.1 57 370-427 463-519 (549)
344 PF10345 Cohesin_load: Cohesin 83.1 28 0.0006 39.7 15.1 136 366-531 298-467 (608)
345 COG3947 Response regulator con 82.7 3.4 7.5E-05 41.8 6.5 60 373-432 283-342 (361)
346 PF14863 Alkyl_sulf_dimr: Alky 82.6 2.5 5.5E-05 38.4 5.2 52 368-419 69-120 (141)
347 PF11207 DUF2989: Protein of u 80.4 5.5 0.00012 38.4 6.8 55 368-423 140-198 (203)
348 KOG1914 mRNA cleavage and poly 80.2 38 0.00083 37.4 13.7 73 359-432 10-82 (656)
349 COG2912 Uncharacterized conser 80.1 5.2 0.00011 40.3 6.8 64 374-442 186-249 (269)
350 KOG1310 WD40 repeat protein [G 80.0 8 0.00017 42.3 8.5 96 370-499 375-473 (758)
351 KOG2396 HAT (Half-A-TPR) repea 79.8 6.4 0.00014 42.8 7.7 78 360-442 96-174 (568)
352 COG4649 Uncharacterized protei 79.6 30 0.00066 32.7 11.1 105 369-508 94-202 (221)
353 COG4941 Predicted RNA polymera 79.5 84 0.0018 32.8 15.5 148 386-550 213-402 (415)
354 KOG1310 WD40 repeat protein [G 79.1 10 0.00023 41.4 9.0 104 404-546 375-478 (758)
355 PF07163 Pex26: Pex26 protein; 78.6 51 0.0011 33.5 13.1 131 372-537 38-182 (309)
356 smart00386 HAT HAT (Half-A-TPR 78.1 3.3 7.1E-05 26.3 3.4 30 383-412 1-30 (33)
357 KOG1258 mRNA processing protei 78.1 1E+02 0.0022 34.5 16.4 167 370-554 298-482 (577)
358 PF10516 SHNi-TPR: SHNi-TPR; 77.3 2.3 5E-05 29.4 2.4 30 370-399 2-31 (38)
359 PF15015 NYD-SP12_N: Spermatog 76.6 14 0.00029 39.5 8.8 52 480-539 237-288 (569)
360 PF10255 Paf67: RNA polymerase 76.2 15 0.00032 39.4 9.3 132 388-541 58-192 (404)
361 TIGR03504 FimV_Cterm FimV C-te 75.3 5.5 0.00012 28.5 4.0 25 517-541 3-27 (44)
362 KOG1258 mRNA processing protei 74.5 55 0.0012 36.5 13.2 132 383-534 276-421 (577)
363 PRK13184 pknD serine/threonine 74.5 43 0.00093 40.0 13.3 136 373-546 479-624 (932)
364 KOG3807 Predicted membrane pro 74.4 1.2E+02 0.0025 31.8 15.3 70 360-431 209-303 (556)
365 COG5187 RPN7 26S proteasome re 73.9 55 0.0012 33.5 11.9 30 403-432 115-144 (412)
366 KOG3364 Membrane protein invol 73.8 35 0.00076 30.9 9.4 65 403-499 32-99 (149)
367 KOG2041 WD40 repeat protein [G 72.8 38 0.00082 38.5 11.4 61 365-429 688-760 (1189)
368 COG3629 DnrI DNA-binding trans 72.3 32 0.00068 35.1 10.1 48 486-541 168-215 (280)
369 KOG4814 Uncharacterized conser 72.2 42 0.00092 37.8 11.5 98 408-541 359-456 (872)
370 KOG0687 26S proteasome regulat 71.6 58 0.0013 33.8 11.6 45 388-432 83-133 (393)
371 KOG1920 IkappaB kinase complex 70.9 13 0.00029 44.3 7.9 28 472-499 1000-1027(1265)
372 KOG0890 Protein kinase of the 70.8 67 0.0015 41.5 14.1 66 365-432 1666-1731(2382)
373 PF11421 Synthase_beta: ATP sy 70.8 4.5 9.8E-05 29.1 2.6 15 1-15 1-15 (49)
374 KOG3783 Uncharacterized conser 70.0 37 0.0008 37.4 10.5 75 450-547 450-525 (546)
375 KOG2396 HAT (Half-A-TPR) repea 69.3 74 0.0016 34.9 12.4 86 389-508 91-176 (568)
376 KOG2041 WD40 repeat protein [G 69.2 24 0.00052 40.0 8.9 28 403-430 796-823 (1189)
377 KOG2581 26S proteasome regulat 68.8 76 0.0016 33.9 12.0 60 373-432 213-276 (493)
378 KOG1239 Inner membrane protein 68.4 93 0.002 33.2 13.1 153 191-344 6-160 (372)
379 KOG0686 COP9 signalosome, subu 67.6 38 0.00082 36.1 9.6 103 404-539 151-255 (466)
380 KOG2114 Vacuolar assembly/sort 66.9 26 0.00057 40.5 8.9 52 380-432 345-397 (933)
381 KOG1538 Uncharacterized conser 66.3 15 0.00032 41.2 6.6 51 480-541 782-832 (1081)
382 COG5191 Uncharacterized conser 64.7 9.9 0.00022 39.0 4.6 73 365-442 103-176 (435)
383 KOG1914 mRNA cleavage and poly 64.5 1.1E+02 0.0024 34.0 12.6 72 393-499 10-81 (656)
384 TIGR03504 FimV_Cterm FimV C-te 64.0 12 0.00026 26.8 3.8 26 406-431 2-27 (44)
385 KOG4814 Uncharacterized conser 63.6 27 0.00059 39.2 8.0 65 481-547 364-428 (872)
386 cd02682 MIT_AAA_Arch MIT: doma 63.4 17 0.00037 29.3 4.9 42 369-410 6-54 (75)
387 KOG2422 Uncharacterized conser 63.0 2.4E+02 0.0052 31.7 14.9 70 363-432 278-371 (665)
388 smart00299 CLH Clathrin heavy 62.9 1.1E+02 0.0023 27.1 10.9 48 379-427 17-64 (140)
389 COG1747 Uncharacterized N-term 62.5 1.9E+02 0.0041 32.1 13.8 62 369-432 99-160 (711)
390 PF09205 DUF1955: Domain of un 62.5 35 0.00075 30.9 7.1 62 370-431 86-148 (161)
391 PF01956 DUF106: Integral memb 62.2 20 0.00043 33.5 6.1 95 119-214 12-114 (168)
392 KOG3616 Selective LIM binding 62.1 58 0.0012 37.3 10.2 66 361-426 987-1057(1636)
393 PF11817 Foie-gras_1: Foie gra 62.0 55 0.0012 32.6 9.6 52 486-539 193-244 (247)
394 PF12854 PPR_1: PPR repeat 61.7 15 0.00032 24.4 3.7 24 515-538 9-32 (34)
395 PF07219 HemY_N: HemY protein 61.5 23 0.00049 30.5 5.8 50 369-418 59-108 (108)
396 KOG1497 COP9 signalosome, subu 61.5 74 0.0016 33.0 10.1 22 405-426 105-126 (399)
397 TIGR02710 CRISPR-associated pr 60.6 2E+02 0.0044 30.7 13.8 56 373-428 134-196 (380)
398 KOG0686 COP9 signalosome, subu 60.6 81 0.0017 33.7 10.5 102 370-499 151-257 (466)
399 PF11207 DUF2989: Protein of u 59.9 24 0.00052 34.0 6.1 51 480-534 149-199 (203)
400 PF04190 DUF410: Protein of un 59.8 36 0.00078 34.3 7.8 26 401-426 88-113 (260)
401 PF10255 Paf67: RNA polymerase 59.8 18 0.0004 38.8 5.9 65 406-498 125-191 (404)
402 KOG0546 HSP90 co-chaperone CPR 59.7 11 0.00023 39.4 3.9 64 484-555 288-351 (372)
403 PRK11619 lytic murein transgly 59.2 1.9E+02 0.0041 33.3 14.3 144 368-539 311-465 (644)
404 PF11817 Foie-gras_1: Foie gra 58.2 66 0.0014 32.0 9.4 45 387-431 156-206 (247)
405 PF01535 PPR: PPR repeat; Int 58.1 15 0.00033 22.8 3.3 26 517-542 4-29 (31)
406 COG5159 RPN6 26S proteasome re 58.0 2.3E+02 0.0049 29.1 12.7 162 373-541 7-193 (421)
407 KOG0985 Vesicle coat protein c 58.0 86 0.0019 37.4 10.9 131 374-538 1199-1337(1666)
408 PF11846 DUF3366: Domain of un 57.3 21 0.00045 34.0 5.4 46 386-432 128-173 (193)
409 PHA02537 M terminase endonucle 57.2 1.2E+02 0.0026 30.0 10.7 39 517-555 173-222 (230)
410 KOG4056 Translocase of outer m 57.1 26 0.00056 31.5 5.4 55 502-556 70-124 (143)
411 PF10952 DUF2753: Protein of u 57.1 30 0.00066 30.7 5.7 62 371-432 3-79 (140)
412 cd02680 MIT_calpain7_2 MIT: do 56.5 18 0.00039 29.1 4.0 34 486-542 2-35 (75)
413 PF11846 DUF3366: Domain of un 56.1 36 0.00078 32.3 6.8 51 486-545 126-176 (193)
414 PF04053 Coatomer_WDAD: Coatom 56.0 1.6E+02 0.0034 32.2 12.4 13 451-463 349-361 (443)
415 KOG0890 Protein kinase of the 55.6 1.3E+02 0.0028 39.2 12.6 126 385-546 1645-1788(2382)
416 KOG0530 Protein farnesyltransf 55.5 46 0.001 33.5 7.4 153 383-555 92-267 (318)
417 KOG1464 COP9 signalosome, subu 54.6 1.1E+02 0.0023 31.1 9.7 51 381-431 39-93 (440)
418 COG3014 Uncharacterized protei 53.8 60 0.0013 33.9 8.1 43 388-430 40-85 (449)
419 TIGR02996 rpt_mate_G_obs repea 53.6 26 0.00057 24.8 3.9 34 390-423 3-36 (42)
420 PF12854 PPR_1: PPR repeat 53.5 28 0.00061 23.0 4.0 27 402-428 6-32 (34)
421 PF10938 YfdX: YfdX protein; 52.8 1.2E+02 0.0026 28.0 9.4 131 405-541 4-145 (155)
422 COG2912 Uncharacterized conser 52.7 1.6E+02 0.0035 29.8 10.8 54 486-547 196-249 (269)
423 smart00386 HAT HAT (Half-A-TPR 52.5 25 0.00055 21.9 3.6 29 527-555 1-29 (33)
424 PRK11619 lytic murein transgly 52.2 2.5E+02 0.0054 32.3 13.8 32 516-548 349-380 (644)
425 KOG3783 Uncharacterized conser 50.8 2.2E+02 0.0047 31.7 12.1 82 386-499 250-331 (546)
426 COG4455 ImpE Protein of avirul 50.1 62 0.0013 31.8 7.1 61 481-549 11-71 (273)
427 TIGR00985 3a0801s04tom mitocho 49.2 70 0.0015 29.3 7.0 55 502-556 79-134 (148)
428 TIGR00756 PPR pentatricopeptid 49.1 36 0.00077 21.5 4.0 26 517-542 4-29 (35)
429 cd02679 MIT_spastin MIT: domai 49.1 33 0.00072 27.9 4.4 34 486-542 4-37 (79)
430 KOG2561 Adaptor protein NUB1, 48.6 76 0.0016 34.2 8.1 47 494-541 249-295 (568)
431 PF08238 Sel1: Sel1 repeat; I 48.3 35 0.00077 22.6 4.0 29 403-431 1-36 (39)
432 KOG1464 COP9 signalosome, subu 47.9 47 0.001 33.6 6.1 53 486-542 42-94 (440)
433 smart00671 SEL1 Sel1-like repe 47.4 33 0.00071 22.3 3.6 28 404-431 2-33 (36)
434 cd02681 MIT_calpain7_1 MIT: do 46.4 21 0.00046 28.8 2.9 21 413-433 16-36 (76)
435 cd02677 MIT_SNX15 MIT: domain 46.2 18 0.00039 29.1 2.5 32 386-432 4-35 (75)
436 PF02064 MAS20: MAS20 protein 45.1 31 0.00067 30.5 4.0 50 506-555 56-105 (121)
437 PF09797 NatB_MDM20: N-acetylt 44.8 54 0.0012 34.6 6.7 47 383-429 197-243 (365)
438 PF09205 DUF1955: Domain of un 44.7 95 0.0021 28.2 6.9 56 479-542 94-149 (161)
439 COG5107 RNA14 Pre-mRNA 3'-end 44.6 1.6E+02 0.0034 32.2 9.6 41 391-431 30-70 (660)
440 PF08626 TRAPPC9-Trs120: Trans 44.6 1.9E+02 0.0041 35.9 12.0 136 402-545 241-437 (1185)
441 PF10373 EST1_DNA_bind: Est1 D 44.3 39 0.00084 33.7 5.3 62 490-559 1-62 (278)
442 PF04212 MIT: MIT (microtubule 44.1 30 0.00065 26.9 3.5 25 409-433 11-35 (69)
443 PF13041 PPR_2: PPR repeat fam 43.7 47 0.001 23.7 4.3 32 515-546 5-38 (50)
444 PF15015 NYD-SP12_N: Spermatog 43.5 49 0.0011 35.5 5.8 61 370-430 229-289 (569)
445 KOG0128 RNA-binding protein SA 42.5 3.5E+02 0.0075 31.7 12.5 70 362-431 106-178 (881)
446 COG3947 Response regulator con 42.1 1.4E+02 0.0031 30.7 8.5 46 486-539 294-339 (361)
447 cd02682 MIT_AAA_Arch MIT: doma 41.7 43 0.00093 27.0 4.0 29 405-433 8-36 (75)
448 PHA01081 putative minor coat p 41.6 53 0.0011 27.9 4.6 25 117-141 74-100 (104)
449 COG5107 RNA14 Pre-mRNA 3'-end 41.3 5.2E+02 0.011 28.4 13.7 70 359-431 292-361 (660)
450 PF13041 PPR_2: PPR repeat fam 40.5 73 0.0016 22.7 4.9 30 402-431 2-31 (50)
451 cd02683 MIT_1 MIT: domain cont 40.2 33 0.00071 27.7 3.2 23 411-433 14-36 (77)
452 PF13812 PPR_3: Pentatricopept 39.9 72 0.0016 20.2 4.4 27 516-542 4-30 (34)
453 cd02656 MIT MIT: domain contai 39.8 33 0.00071 27.2 3.1 23 410-432 13-35 (75)
454 KOG0128 RNA-binding protein SA 38.6 3.3E+02 0.0071 32.0 11.5 139 372-543 82-220 (881)
455 COG3107 LppC Putative lipoprot 38.5 6.1E+02 0.013 28.4 13.9 163 371-547 65-237 (604)
456 COG2015 Alkyl sulfatase and re 38.2 63 0.0014 35.3 5.6 56 369-424 452-507 (655)
457 PF04212 MIT: MIT (microtubule 37.3 73 0.0016 24.7 4.7 24 372-395 8-31 (69)
458 cd02679 MIT_spastin MIT: domai 36.9 37 0.00081 27.6 3.0 36 383-433 3-38 (79)
459 PRK15490 Vi polysaccharide bio 36.5 82 0.0018 35.5 6.5 64 362-427 35-98 (578)
460 PF05053 Menin: Menin; InterP 35.8 66 0.0014 35.8 5.5 56 401-463 275-332 (618)
461 PLN02294 cytochrome c oxidase 34.7 94 0.002 29.1 5.5 11 3-13 2-12 (174)
462 COG5191 Uncharacterized conser 34.4 2.5E+02 0.0054 29.2 8.9 88 391-513 95-183 (435)
463 KOG4521 Nuclear pore complex, 33.9 3.8E+02 0.0082 32.8 11.3 30 402-431 919-948 (1480)
464 KOG4014 Uncharacterized conser 33.6 4.4E+02 0.0096 25.4 11.6 149 367-542 66-233 (248)
465 PRK15490 Vi polysaccharide bio 33.0 2E+02 0.0043 32.5 8.8 72 378-463 17-88 (578)
466 PF14863 Alkyl_sulf_dimr: Alky 32.0 1.1E+02 0.0023 27.9 5.5 47 514-560 71-117 (141)
467 PF15050 SCIMP: SCIMP protein 31.7 43 0.00094 29.3 2.7 34 124-157 14-47 (133)
468 smart00745 MIT Microtubule Int 31.7 59 0.0013 25.8 3.4 21 413-433 18-38 (77)
469 KOG2561 Adaptor protein NUB1, 31.7 2.3E+02 0.0049 30.8 8.4 107 370-499 164-295 (568)
470 PF12739 TRAPPC-Trs85: ER-Golg 31.5 6.1E+02 0.013 27.3 12.3 29 514-542 301-329 (414)
471 cd02681 MIT_calpain7_1 MIT: do 31.3 75 0.0016 25.6 3.9 28 370-397 7-34 (76)
472 KOG0546 HSP90 co-chaperone CPR 31.2 63 0.0014 33.9 4.2 65 374-443 280-344 (372)
473 KOG0529 Protein geranylgeranyl 30.9 7.1E+02 0.015 26.9 15.3 139 376-550 35-186 (421)
474 PF10952 DUF2753: Protein of u 30.8 3.9E+02 0.0085 23.9 8.4 28 405-432 3-30 (140)
475 KOG0276 Vesicle coat complex C 30.5 3.8E+02 0.0082 30.4 10.1 19 521-539 729-747 (794)
476 PF11044 TMEMspv1-c74-12: Plec 30.1 1.5E+02 0.0032 21.2 4.6 27 121-147 2-30 (49)
477 cd02678 MIT_VPS4 MIT: domain c 30.1 65 0.0014 25.7 3.4 23 411-433 14-36 (75)
478 cd02683 MIT_1 MIT: domain cont 30.0 97 0.0021 25.0 4.4 25 371-395 8-32 (77)
479 KOG2908 26S proteasome regulat 30.0 5.1E+02 0.011 27.2 10.4 62 371-432 76-144 (380)
480 cd02680 MIT_calpain7_2 MIT: do 29.7 53 0.0011 26.5 2.7 34 385-433 3-36 (75)
481 PF04097 Nic96: Nup93/Nic96; 29.7 5.5E+02 0.012 29.3 12.0 89 311-432 365-456 (613)
482 PRK00247 putative inner membra 29.3 4.3E+02 0.0093 28.8 10.3 17 103-119 5-21 (429)
483 KOG1538 Uncharacterized conser 28.8 1.3E+02 0.0028 34.2 6.2 68 307-379 669-742 (1081)
484 PF00244 14-3-3: 14-3-3 protei 28.0 5.9E+02 0.013 25.1 15.8 44 370-413 2-46 (236)
485 PRK02201 putative inner membra 27.6 1.5E+02 0.0032 31.4 6.4 11 105-115 110-120 (357)
486 KOG4056 Translocase of outer m 27.5 1.4E+02 0.0031 26.9 5.3 34 373-406 85-118 (143)
487 cd02656 MIT MIT: domain contai 27.4 78 0.0017 25.0 3.4 26 372-397 9-34 (75)
488 PF04348 LppC: LppC putative l 27.3 21 0.00045 40.1 0.0 43 388-430 8-51 (536)
489 KOG2997 F-box protein FBX9 [Ge 26.9 78 0.0017 32.7 4.0 47 486-555 15-61 (366)
490 COG3014 Uncharacterized protei 26.7 6.9E+02 0.015 26.4 10.6 38 518-555 218-255 (449)
491 PF12583 TPPII_N: Tripeptidyl 25.7 1E+02 0.0022 27.7 4.0 43 371-413 78-120 (139)
492 cd02684 MIT_2 MIT: domain cont 25.2 83 0.0018 25.2 3.2 21 413-433 16-36 (75)
493 PF01239 PPTA: Protein prenylt 25.1 1.7E+02 0.0038 18.6 4.2 27 388-414 2-28 (31)
494 smart00745 MIT Microtubule Int 25.0 1.4E+02 0.003 23.5 4.5 13 419-431 31-43 (77)
495 PF14689 SPOB_a: Sensor_kinase 24.4 3.2E+02 0.007 20.8 6.7 28 514-541 24-51 (62)
496 KOG0529 Protein geranylgeranyl 24.3 9.2E+02 0.02 26.0 12.1 49 384-432 90-140 (421)
497 COG1422 Predicted membrane pro 22.9 1.3E+02 0.0028 29.0 4.4 41 121-163 45-86 (201)
498 PF04190 DUF410: Protein of un 22.7 7.8E+02 0.017 24.6 12.3 88 370-463 11-104 (260)
499 PRK15180 Vi polysaccharide bio 22.1 1.8E+02 0.0039 31.9 5.7 108 366-507 320-427 (831)
500 PF02064 MAS20: MAS20 protein 22.0 1.3E+02 0.0029 26.5 4.1 32 373-404 67-98 (121)
No 1
>PRK02944 OxaA-like protein precursor; Validated
Probab=100.00 E-value=1.4e-43 Score=352.13 Aligned_cols=208 Identities=21% Similarity=0.318 Sum_probs=179.2
Q ss_pred hHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCCCCCCc------hhHHHHHH
Q 008246 103 PVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG------KRFVDQIS 176 (572)
Q Consensus 103 pv~~v~~~l~~lh~~~glpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~------~~~~e~~~ 176 (572)
-+..+.++|+++|..+|.|||++|+++|+++|++++|++++|+|+++||+++|||++++++||+++ +.++|+++
T Consensus 40 ~~~p~~~~l~~i~~~~g~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk~~~~~~~~k~~~e~~~ 119 (255)
T PRK02944 40 FVYPLSQLITYFANLFGSNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSSKDQATQQKLQQEMMQ 119 (255)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999999999999999999999999999987643 23578899
Q ss_pred HHHHhhhhCCCCchhHHHHHHHHhHHHHHHHHHHHHhhhcCCCCCCccccccccccCCCCCCCchhHHHHHHHHHHHHHH
Q 008246 177 LFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTN 256 (572)
Q Consensus 177 l~kk~~~~~g~~~~~~~~lp~liQ~Pifi~~~~~lr~m~~~~~p~l~~~g~lW~~dLt~~Dp~~~~~iLPil~~~~~~~~ 256 (572)
+|||| ||+|+. ..+|+++|+|||+++|.++|++. ++.++||+|| ||+.+|| +++||++++++++++
T Consensus 120 Lyk~~----gvnP~~-g~lp~liQ~Pifi~lf~~i~~~~-----~l~~~~flW~-dLs~~Dp---~~iLPil~~~~~~~~ 185 (255)
T PRK02944 120 LFQKN----GVNPLA-GCLPIFIQMPILIAFYHAIMRTS-----EISKHSFLWF-DLGQADP---YYILPIVAGITTFIQ 185 (255)
T ss_pred HHHHc----CCCchH-HHHHHHHHHHHHHHHHHHHHhhH-----HHhhcCCCcc-ccCcchH---HHHHHHHHHHHHHHH
Confidence 99998 677764 45899999999999999999985 6788999999 9999999 899999999999999
Q ss_pred HHHhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHHHHHHHHHcCHHHHhhhCCCC
Q 008246 257 VQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPD 333 (572)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~l~~~~~~~~~Pagl~lYWi~s~~~sl~Q~~~lr~~~~r~~lgip~ 333 (572)
.+++.... +.++ ..++.+++++++.+++++.++|+|+++||++||+|+++|++++++|.+|+..+-..
T Consensus 186 ~~~~~~~~---~~~~------~~~~~m~~i~p~~~~~~~~~~Pagl~lYw~~s~~~~i~Q~~~l~~~~~~~~~~~~~ 253 (255)
T PRK02944 186 QKLMMAGT---AGQN------PQMAMMLWLMPIMILIFAINFPAALSLYWVVGNIFMIAQTYLIKGPEIKASKAGGS 253 (255)
T ss_pred HHhcccCC---CCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchhhcCCC
Confidence 88754321 1111 12456777888888888999999999999999999999999999999999876543
No 2
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=2.2e-42 Score=337.65 Aligned_cols=194 Identities=19% Similarity=0.270 Sum_probs=167.4
Q ss_pred HhhhcCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCCCCCCch--hHHHHHHHHHHhhhhCCCCchh
Q 008246 114 YHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISLFRREKRAAGCPSLL 191 (572)
Q Consensus 114 lh~~~glpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~~--~~~e~~~l~kk~~~~~g~~~~~ 191 (572)
+|..+|+|||++|+++|+++|++++|++++|+|+++||++++|+++++++|+++++ .++|++++|||| ||+|+.
T Consensus 23 ~~~~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~d~~~~~~e~~~Lyk~~----~inp~~ 98 (223)
T PRK00145 23 VISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKLQQEMMKLYKEK----GVNPLG 98 (223)
T ss_pred hhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHh----CCCchH
Confidence 34446899999999999999999999999999999999999999999999877653 467899999998 687764
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhcCCCCCCccccccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcccccCCccch
Q 008246 192 WFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENG 271 (572)
Q Consensus 192 ~~~lp~liQ~Pifi~~~~~lr~m~~~~~p~l~~~g~lW~~dLt~~Dp~~~~~iLPil~~~~~~~~~~~~~~~~~~~~~~~ 271 (572)
..+|+++|+|||+++|+++|+++ ++.++|++||+||+.+|| +++||++++++++++.+++.+.. ..+
T Consensus 99 -~~lp~liQiPif~~l~~~i~~~~-----~~~~~~flW~~dLt~~Dp---~~iLPil~~~~~~l~~~~~~~~~---~~~- 165 (223)
T PRK00145 99 -GCLPLLIQWPILIALYYVFNNLT-----GINGVSFLWIKDLAKPDI---TWILPILSGATTYLSGYLMTKAD---SSQ- 165 (223)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhh-----hccCCCccChhhccCcch---HHHHHHHHHHHHHHHHHHcCCCC---hhH-
Confidence 45888999999999999999986 678899999999999999 89999999999999998865431 111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHHHHHHHHHcCHHHHhhh
Q 008246 272 LLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTML 329 (572)
Q Consensus 272 ~~~~~~k~~k~~l~~~~l~~~~~~~~~Pagl~lYWi~s~~~sl~Q~~~lr~~~~r~~l 329 (572)
.+.++.+++++++.+++++.++|+|+++||++||+|+++|++++|++..+|..
T Consensus 166 -----~~~~k~m~~~~~i~~~~~~~~~Pagl~lYW~~s~~~si~Q~~~l~~~~~~~~~ 218 (223)
T PRK00145 166 -----AGQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTYFIKKLELKKKV 218 (223)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Confidence 23456677778888888889999999999999999999999999987666653
No 3
>PRK01622 OxaA-like protein precursor; Validated
Probab=100.00 E-value=2.5e-40 Score=329.38 Aligned_cols=199 Identities=20% Similarity=0.294 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhhhHHHHHHHH----HHHHHHhCCCCCCCCCCCCCch-------hHH
Q 008246 104 VRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKK----IQRIAELLPRLPPPFPPPLSGK-------RFV 172 (572)
Q Consensus 104 v~~v~~~l~~lh~~~glpW~~aIil~ti~vRl~llPl~i~~~~~----~~k~~~l~P~l~~i~~~~~~~~-------~~~ 172 (572)
+..+.++++++|+.+|.|||++|+++|+++|++++|++++|+|+ ++||+++||+++++++||++++ .++
T Consensus 42 ~~p~~~ll~~l~~~~~~~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~~iqP~l~~iq~kyk~~~d~~~~~~~~~ 121 (256)
T PRK01622 42 VYPFSFLIQFVAHHIGGSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAKLKVTKDLEKQKEYQK 121 (256)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCHHHHHHHHHHhccCCHHHHHHHHH
Confidence 56777899999999999999999999999999999999999999 8999999999999998876532 246
Q ss_pred HHHHHHHHhhhhCCCCchhHHHHHHHHhHHHHHHHHHHHHhhhcCCCCCCccccccccccCCCCCCCchhHHHHHHHHHH
Q 008246 173 DQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGL 252 (572)
Q Consensus 173 e~~~l~kk~~~~~g~~~~~~~~lp~liQ~Pifi~~~~~lr~m~~~~~p~l~~~g~lW~~dLt~~Dp~~~~~iLPil~~~~ 252 (572)
|++++|||| ||+|+....+|+++|+|||+++|+++|++ |++.++||+|| ||+.+| +|||++++++
T Consensus 122 e~~~Lyk~~----gi~P~~~g~lp~liQ~Pif~~lf~~lr~~-----~~l~~~~flW~-dLs~~D-----~ILPil~~~~ 186 (256)
T PRK01622 122 EMMELYKSG----NINPLAMGCLPLLIQMPILSAFYYAIRRT-----EEIASHSFLWF-NLGHAD-----HILPIIAGLT 186 (256)
T ss_pred HHHHHHHHc----CCCCchhhHHHHHHHHHHHHHHHHHHHhC-----hhccCCCceee-CCcchh-----HHHHHHHHHH
Confidence 788999987 67776545699999999999999999997 47889999999 999988 6999999999
Q ss_pred HHHHHHHhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHHHHHHHHHcCHH
Q 008246 253 HYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPA 324 (572)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~l~~~~~~~~~Pagl~lYWi~s~~~sl~Q~~~lr~~~ 324 (572)
++++++++.... . ++.+ .+.+|.+++++++++++++.++|+|+++||++||+|+++|++++|+..
T Consensus 187 ~~~~~~~~~~~~---~-~~~q---~~~~k~m~~~~pi~~~~~~~~~Psgl~lYW~~snl~si~Q~~~l~~~~ 251 (256)
T PRK01622 187 YFIQMKVSQSNG---T-SPEQ---VQMLKIQGIMMPAMILFMSFAAPSALVLYWITGGLFLMGQTIVLRKVM 251 (256)
T ss_pred HHHHHHHcCCCC---C-ChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988765321 1 1111 345666777888888888999999999999999999999999998654
No 4
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=100.00 E-value=4.5e-40 Score=318.27 Aligned_cols=188 Identities=29% Similarity=0.489 Sum_probs=163.8
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCCCCCCch--hHHHHHHHHHHhhhhCCCCchhHHHHHHH
Q 008246 121 PWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISLFRREKRAAGCPSLLWFIASFA 198 (572)
Q Consensus 121 pW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~~--~~~e~~~l~kk~~~~~g~~~~~~~~lp~l 198 (572)
+||++|+++|+++|++++|++++|+|+++||++++|+++++++|+++++ .++|++++|||| ||+|++ .++|++
T Consensus 2 sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~----~~~p~~-~~~~~l 76 (198)
T PF02096_consen 2 SWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKH----GVNPLK-GCLPPL 76 (198)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHc----CCCcHH-HHHHHH
Confidence 8999999999999999999999999999999999999999999886543 467889999997 898874 467889
Q ss_pred HhHHHHHHHHHHHHhhhcCCCCCCccccccccccCCCCC-----CCchhHHHHHHHHHHHHHHHHHhcccccCCccchhh
Q 008246 199 IQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYP-----HGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLL 273 (572)
Q Consensus 199 iQ~Pifi~~~~~lr~m~~~~~p~l~~~g~lW~~dLt~~D-----p~~~~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (572)
+|+|||+++|.++|+|+. +|++.++|++||+||+.+| | +++||++++++++++++++.+ ....+.+ .
T Consensus 77 iq~Pif~~~~~~lr~~~~--~~~~~~~g~lw~~dL~~~D~~~~~p---~~iLPil~~~~~~~~~~~~~~-~~~~~~~-~- 148 (198)
T PF02096_consen 77 IQIPIFIGLFRALRRMAE--VPSLATGGFLWFPDLTAPDPTMGLP---YFILPILAGASMFLNQELSMK-NSKQKSP-Q- 148 (198)
T ss_pred HHHHHHHHHHHHHHHHHH--hcccccCceeChHhcCCCCccchhH---HHHHHHHHHHHHHHHHHHHHh-ccccCCc-c-
Confidence 999999999999999986 7899999999999999999 7 899999999999999999765 2111111 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHHHHHHHHHcCH
Q 008246 274 GLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323 (572)
Q Consensus 274 ~~~~k~~k~~l~~~~l~~~~~~~~~Pagl~lYWi~s~~~sl~Q~~~lr~~ 323 (572)
..+.+|.+++++++.+++++.++|+|+++||++||+|+++|++++|++
T Consensus 149 --~~~~~k~m~~~~~~~~~~~~~~~Paal~lYw~~s~~~~l~Q~~~l~~~ 196 (198)
T PF02096_consen 149 --QAKMMKIMLYIMPLMFLFFTSFFPAALFLYWITSNLFSLLQTLILRRP 196 (198)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 134556666788888888899999999999999999999999999875
No 5
>PRK02463 OxaA-like protein precursor; Provisional
Probab=100.00 E-value=5.3e-40 Score=332.65 Aligned_cols=212 Identities=20% Similarity=0.256 Sum_probs=174.9
Q ss_pred hHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhhhHHHHHHHH----HHHHHHhCCCCCCCCCCCCCch-------hH
Q 008246 103 PVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKK----IQRIAELLPRLPPPFPPPLSGK-------RF 171 (572)
Q Consensus 103 pv~~v~~~l~~lh~~~glpW~~aIil~ti~vRl~llPl~i~~~~~----~~k~~~l~P~l~~i~~~~~~~~-------~~ 171 (572)
-+..+.++++++|+.+|++||++|+++|++||++++|++++|+++ ++||+.++|++++|++||++++ .+
T Consensus 41 l~~p~~~~l~~i~~~~g~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~lqPe~~~Iq~Kyk~~~~~~~~~~~q 120 (307)
T PRK02463 41 LGAPMSYFIDYFANNLGLGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERLKNATTQEEKMAAQ 120 (307)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhcCCChHHHHHHH
Confidence 456788899999999999999999999999999999999988874 6899999999999999876542 25
Q ss_pred HHHHHHHHHhhhhCCCCchhH-HHHHHHHhHHHHHHHHHHHHhhhcCCCCCCccccccccccCCCCCCCchhHHHHHHHH
Q 008246 172 VDQISLFRREKRAAGCPSLLW-FIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMA 250 (572)
Q Consensus 172 ~e~~~l~kk~~~~~g~~~~~~-~~lp~liQ~Pifi~~~~~lr~m~~~~~p~l~~~g~lW~~dLt~~Dp~~~~~iLPil~~ 250 (572)
+|++++|||++ ++|+.. ..+|+|+|+|||+++|++++.. |++.+++|+|| ||+.| +++||++++
T Consensus 121 ~em~~lyke~g----inp~~~~GCLP~LIQ~PIf~aly~ai~~~-----~~l~~~~flwi-dL~~p-----~~iLpii~~ 185 (307)
T PRK02463 121 TELMAAQRENG----ISMLGGIGCLPLLIQMPFFSALYFAAQYT-----KGVSTSTFLGI-DLGSP-----SLVLTAIIG 185 (307)
T ss_pred HHHHHHHHHcC----CCCccccchHHHHHHHHHHHHHHHHHhcc-----hhhccCCeeee-ecCch-----hHHHHHHHH
Confidence 68899999986 333221 1289999999999999999963 68999999999 99875 479999999
Q ss_pred HHHHHHHHHhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHHHHHHHHHc---CHHHHh
Q 008246 251 GLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALK---HPASRT 327 (572)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~l~~~~~~~~~Pagl~lYWi~s~~~sl~Q~~~lr---~~~~r~ 327 (572)
++++++.+++.... ..++ .+.||.++++++++++++++++|+|+.+||++||+|+++|+++++ +|.+|+
T Consensus 186 v~~~~q~~~~~~~~--~~~q------~~~mk~m~~~~Pim~~~~~~~~PagL~lYW~~snlfsi~Q~~i~~~~~~pk~~~ 257 (307)
T PRK02463 186 VLYFFQSWLSMMGV--PEEQ------REQMKAMMYMMPIMMVVFSFSSPAGVGLYWLVGGFFSIIQQLITTYILKPRLRK 257 (307)
T ss_pred HHHHHHHHHhccCC--ChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999998764431 1111 345777889999999999999999999999999999999999976 788777
Q ss_pred hhCCCCCCCC
Q 008246 328 MLGLPDKVVP 337 (572)
Q Consensus 328 ~lgip~~~~~ 337 (572)
...-....+|
T Consensus 258 ~i~~e~~~~p 267 (307)
T PRK02463 258 QIAEEFAKNP 267 (307)
T ss_pred HHHHHhhcCC
Confidence 6644444443
No 6
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=100.00 E-value=7.3e-40 Score=311.17 Aligned_cols=179 Identities=26% Similarity=0.440 Sum_probs=157.7
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCCCCCCch--hHHHHHHHHHHhhhhCCCCchhHHHHHHH
Q 008246 121 PWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISLFRREKRAAGCPSLLWFIASFA 198 (572)
Q Consensus 121 pW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~~--~~~e~~~l~kk~~~~~g~~~~~~~~lp~l 198 (572)
+||++|+++|+++|++++|++++|+|+++||++++|+++++++|+++++ .++|++++|||| ||+|++. ++|++
T Consensus 1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~----~~~p~~~-~lp~l 75 (181)
T TIGR03592 1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEE----GVNPLGG-CLPLL 75 (181)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHh----CCCcHHH-HHHHH
Confidence 7999999999999999999999999999999999999999999877654 367899999997 7888754 58889
Q ss_pred HhHHHHHHHHHHHHhhhcCCCCCCccccccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcccccCCccchhhhHHHH
Q 008246 199 IQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAK 278 (572)
Q Consensus 199 iQ~Pifi~~~~~lr~m~~~~~p~l~~~g~lW~~dLt~~Dp~~~~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 278 (572)
+|+|||+++|.++|++ |++.++|++||+||+.+|| +++||++++++++++++++....+ + .+
T Consensus 76 iQ~Pif~~~~~~lr~~-----~~l~~~~flW~~dL~~~Dp---~~iLPii~~~~~~~~~~~~~~~~~----~------~~ 137 (181)
T TIGR03592 76 IQMPIFIALYQVLRRS-----IELRHAPFLWIKDLSAPDP---YYILPILMGATMFLQQKLSPSGPP----D------PA 137 (181)
T ss_pred HHHHHHHHHHHHHHhh-----HHhccCCCcCccccCcccH---HHHHHHHHHHHHHHHHHhcCCCCC----C------HH
Confidence 9999999999999997 4789999999999999999 899999999999999998655321 1 12
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHHHHHHHHHcC
Q 008246 279 YYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKH 322 (572)
Q Consensus 279 ~~k~~l~~~~l~~~~~~~~~Pagl~lYWi~s~~~sl~Q~~~lr~ 322 (572)
.+|.+++++++.+++++.++|+|+++||++||+|+++|++++|+
T Consensus 138 ~~k~m~~~~p~~~~~~~~~~pa~l~lYw~~s~~~sl~Q~~~l~~ 181 (181)
T TIGR03592 138 QQKIMMYIMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR 181 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34556678888888888999999999999999999999999863
No 7
>PRK01318 membrane protein insertase; Provisional
Probab=100.00 E-value=1.1e-39 Score=352.67 Aligned_cols=203 Identities=20% Similarity=0.336 Sum_probs=172.4
Q ss_pred CCCcc--hHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCCCCCCch--hHHH
Q 008246 98 EESSL--PVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVD 173 (572)
Q Consensus 98 ~~~~~--pv~~v~~~l~~lh~~~glpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~~--~~~e 173 (572)
++||. .+..+.++|+++|.++| |||++||++|+++|++++|++++|+|+++||++++|+|++|++|+++++ .++|
T Consensus 298 ~~G~~~~~~~pl~~~L~~i~~~~g-~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~d~~k~~~e 376 (521)
T PRK01318 298 DYGWLWFITKPLFWLLDFLHSFVG-NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDPQKMQQE 376 (521)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHhhHHHHHHH
Confidence 55554 57899999999999999 9999999999999999999999999999999999999999999887664 5789
Q ss_pred HHHHHHHhhhhCCCCchhHHHHHHHHhHHHHHHHHHHHHhhhcCCCCCCcccccc-ccccCCCCCCCchhHHH-----HH
Q 008246 174 QISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW-WFQNLTEYPHGVLGSIF-----PV 247 (572)
Q Consensus 174 ~~~l~kk~~~~~g~~~~~~~~lp~liQ~Pifi~~~~~lr~m~~~~~p~l~~~g~l-W~~dLt~~Dp~~~~~iL-----Pi 247 (572)
+|++|||++ |+|+. ..+|+|+|+||||++|.+++++. .+..++|+ ||+||+.+|| ++|| |+
T Consensus 377 ~~~LYKk~~----vnPl~-gclp~liQiPifialy~~l~~~~-----el~~~~fl~Wi~DLs~~Dp---~~il~~~~lPi 443 (521)
T PRK01318 377 MMELYKKEK----VNPLG-GCLPILIQIPIFFALYKVLLVSI-----ELRHAPFIGWIHDLSAPDP---YFILHIGLLPI 443 (521)
T ss_pred HHHHHHHcC----CCccc-hhHHHHHHHHHHHHHHHHHHHHH-----HhccCchheeecccccccc---chhHHHHHHHH
Confidence 999999985 44432 23899999999999999999986 56778887 9999999999 7888 99
Q ss_pred HHHHHHHHHHHHhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHHHHHHHHHcCHHHH
Q 008246 248 LMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASR 326 (572)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~l~~~~~~~~~Pagl~lYWi~s~~~sl~Q~~~lr~~~~r 326 (572)
+++++++++++++... . +. .+++++.+|++++++++.++|+||++||++||+|+++|++++++...+
T Consensus 444 l~~~~~~~~~~l~~~~--~---~~-------~q~kim~~mpi~~~~~~~~~PagL~lYW~~sn~~si~Q~~~l~~~~~~ 510 (521)
T PRK01318 444 LMGITMFLQQKLNPTP--T---DP-------MQAKIMKFMPLIFTFFFLSFPAGLVLYWIVNNLLTIIQQYLINRRLEK 510 (521)
T ss_pred HHHHHHHHHHHhcCCC--C---CH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999987432 1 11 112344467888888889999999999999999999999999865433
No 8
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=2e-39 Score=350.97 Aligned_cols=200 Identities=20% Similarity=0.356 Sum_probs=165.0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCCCCCCch--hHHHHHHHHHHhh--
Q 008246 107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISLFRREK-- 182 (572)
Q Consensus 107 v~~~l~~lh~~~glpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~~--~~~e~~~l~kk~~-- 182 (572)
+.+++.++|..+| |||++||++||+||++++||+++|+|+++||+.+||+|++|++||++++ .++|+|++|||++
T Consensus 562 L~~ll~~fh~l~G-nwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKdD~qK~QqEmMkLYKe~GVN 640 (795)
T PRK01001 562 LFIIMKFFKFLTG-SWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTNKVN 640 (795)
T ss_pred HHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHcCCC
Confidence 4555688999889 9999999999999999999999999999999999999999999887664 5789999999995
Q ss_pred hhCCCCchhHHHHHHHHhHHHHHHHHHHHHhhhcCCCCCCcccccc--ccccCCCCCCCc-----------hhHHHHHHH
Q 008246 183 RAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW--WFQNLTEYPHGV-----------LGSIFPVLM 249 (572)
Q Consensus 183 ~~~g~~~~~~~~lp~liQ~Pifi~~~~~lr~m~~~~~p~l~~~g~l--W~~dLt~~Dp~~-----------~~~iLPil~ 249 (572)
|..|| +|+|+|+||||++|++++++. .+..++|+ |++||+.+||.+ .+.|||+++
T Consensus 641 Pl~GC-------LPmLIQmPIFfALY~vL~~si-----eLRgasFLpgWI~DLSapDplf~~~~~i~FiGd~i~ILPILm 708 (795)
T PRK01001 641 PITGC-------LPLLIQLPFLIAMFDLLKSSF-----LLRGASFIPGWIDNLTAPDVLFSWETPIWFIGNEFHLLPILL 708 (795)
T ss_pred chHHH-------HHHHHHHHHHHHHHHHHHHhH-----HhcCCchhhhhHhhccCCCccccccccccccccchhHHHHHH
Confidence 44555 999999999999999999986 45566777 999999999732 134999999
Q ss_pred HHHHHHHHHHhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHHHHHHHHHcCHH
Q 008246 250 AGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPA 324 (572)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~l~~~~~~~~~Pagl~lYWi~s~~~sl~Q~~~lr~~~ 324 (572)
+++++++++++..... ++.++. .+.++.|+.+|+++++|++.++|+||++||++||+|+++|++++++..
T Consensus 709 gvtmflqqkls~~~~~-dp~t~q----q~Qqk~M~~iMPImf~f~f~~fPSGL~LYW~tSNl~SI~QQ~iI~k~~ 778 (795)
T PRK01001 709 GVVMFAQQKISSLKRK-GPVTDQ----QRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSMLLGVIQQWVTNKIL 778 (795)
T ss_pred HHHHHHHHHhcccCCC-Cccchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 9999999998754321 111111 112234445778888888899999999999999999999999998643
No 9
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.9e-37 Score=312.84 Aligned_cols=218 Identities=20% Similarity=0.245 Sum_probs=167.9
Q ss_pred CCCcchHHHHHHHHHHHh-----hhcCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCCCCCCch--h
Q 008246 98 EESSLPVRALISFLDTYH-----DFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--R 170 (572)
Q Consensus 98 ~~~~~pv~~v~~~l~~lh-----~~~glpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~~--~ 170 (572)
+.+|+|++++.++++.++ ..+|+|||++|+++|+++|++++|++++|+|+++||+++||++++|++||++++ .
T Consensus 3 ~~~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~~~~~~ 82 (304)
T PRK03449 3 DFIYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQKM 82 (304)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhhHHHH
Confidence 456999999999988765 357999999999999999999999999999999999999999999999887654 4
Q ss_pred HHHHHHHHHHhhhhCCCCchhHHHHHHHHhHHHHHHHHHHHHhhhcCCC----CCCc----------------cccccc-
Q 008246 171 FVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGH----PGFD----------------CGGIWW- 229 (572)
Q Consensus 171 ~~e~~~l~kk~~~~~g~~~~~~~~lp~liQ~Pifi~~~~~lr~m~~~~~----p~l~----------------~~g~lW- 229 (572)
++|++++|||+ ||+|+. ..+|+|+|+|||+++|++||+|+.... ++++ .++|+|
T Consensus 83 ~~e~~~Lyk~~----gvnP~~-gclP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sFl~~ 157 (304)
T PRK03449 83 ALEMQKLQKEH----GFNPIL-GCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDA 157 (304)
T ss_pred HHHHHHHHHHc----CCCchH-HHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccccccccccHHHHHHHhhh
Confidence 67899999998 676653 459999999999999999999854210 1110 013443
Q ss_pred ----------cc----------cCCCCCCCchhHHHHHHHHHHHHHHHHHhcccccCCccchhhhHHHHHHHHHHHHHHH
Q 008246 230 ----------FQ----------NLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTL 289 (572)
Q Consensus 230 ----------~~----------dLt~~Dp~~~~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~l 289 (572)
++ |++.+|......++|++++++++++.+++....... ++...++..++|.|+++||+
T Consensus 158 ~~~g~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~--~~~~~~~~~m~k~M~~~mP~ 235 (304)
T PRK03449 158 RLFGAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAE--AAANPQTAMMNKLALWVFPL 235 (304)
T ss_pred hhcCCChHhhhcccchhhchhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccc--cccCcchHHHHHHHHHHhHH
Confidence 32 444444311234688999999999999876543211 11111112334667888999
Q ss_pred HHHHHhhhhhhhhHHHHHhhhHHHHHHHHHHcC
Q 008246 290 PLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKH 322 (572)
Q Consensus 290 ~~~~~~~~~Pagl~lYWi~s~~~sl~Q~~~lr~ 322 (572)
++++++.++|+|+.|||++||+|+++|++++++
T Consensus 236 m~~~~~~~~Pagl~LYW~~snl~~i~Qq~~i~~ 268 (304)
T PRK03449 236 GVLVGGPFLPLAILLYWVSNNIWTFGQQHYVFG 268 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999863
No 10
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.4e-36 Score=311.75 Aligned_cols=207 Identities=22% Similarity=0.391 Sum_probs=177.8
Q ss_pred CCCcchHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCCCCC-Cch--hHHHH
Q 008246 98 EESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPL-SGK--RFVDQ 174 (572)
Q Consensus 98 ~~~~~pv~~v~~~l~~lh~~~glpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~-~~~--~~~e~ 174 (572)
.+.|++...+..+++++|.+.|++||++|+++|++||++++|++.++.++++||+++||++++|++|++ +++ .++|+
T Consensus 86 ~~f~~~~~~~~~~~~~~~~~~g~n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~~~~~~~q~e~ 165 (314)
T COG0706 86 GWFWNILAPLFPLLLFIDSFSGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTDKQKQQQEM 165 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHHHH
Confidence 344666666888999999999999999999999999999999999999999999999999999999888 553 35799
Q ss_pred HHHHHHhh--hhCCCCchhHHHHHHHHhHHHHHHHHHHHHhhhcCCCCCCcccccc-ccccCCCCCCCchhH--HHHHHH
Q 008246 175 ISLFRREK--RAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW-WFQNLTEYPHGVLGS--IFPVLM 249 (572)
Q Consensus 175 ~~l~kk~~--~~~g~~~~~~~~lp~liQ~Pifi~~~~~lr~m~~~~~p~l~~~g~l-W~~dLt~~Dp~~~~~--iLPil~ 249 (572)
|++||||+ +..|| +|+++|+|||+++|.+++++. .+..++|+ |+.||+.+|| ++ ++|+++
T Consensus 166 ~~Lyk~~~vnPl~gc-------lP~liQ~Pifialy~~l~~~~-----~l~~~~f~~w~~dl~~~dp---~~~~~~pii~ 230 (314)
T COG0706 166 MKLYKKHKVNPLAGC-------LPLLIQMPIFIALYYVLRSTV-----ELRGAPFLGWITDLSLPDP---DYILLLPILA 230 (314)
T ss_pred HHHHHHhCCCchhhH-------HHHHHHHHHHHHHHHHHHhcc-----cccccchhhhhhcccCCCC---chhhHHHHHH
Confidence 99999996 55567 899999999999999999986 45555555 9999999999 55 559999
Q ss_pred HHHHHHHHHHhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHHHHHHHHHcCHHHHh
Q 008246 250 AGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRT 327 (572)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~l~~~~~~~~~Pagl~lYWi~s~~~sl~Q~~~lr~~~~r~ 327 (572)
+++++.+.+++....+ ..+ .+.+++++.+|++.++|+++.+|+||.+||++||+|+++|+++++++..++
T Consensus 231 gv~~f~q~~ls~~~~~--~~q------~~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~fsi~Qq~ii~~~~~~~ 300 (314)
T COG0706 231 GVTMFLQQKLSPRNLS--TPQ------DPQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSILQQYILNKPLEKK 300 (314)
T ss_pred HHHHHHHHHhccccCC--ccc------CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Confidence 9999999999876532 111 124566778888888899999999999999999999999999999998877
No 11
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=2.2e-36 Score=310.08 Aligned_cols=218 Identities=11% Similarity=0.174 Sum_probs=166.1
Q ss_pred cchHHHHHHHH---HHHhhhcCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCCCCCCc--------h
Q 008246 101 SLPVRALISFL---DTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG--------K 169 (572)
Q Consensus 101 ~~pv~~v~~~l---~~lh~~~glpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~--------~ 169 (572)
.+|+.++...+ +.+|...|+|||++|+++|+++|++++|++++|.++++||+++|||+++|++||+++ +
T Consensus 109 v~P~~~il~~i~~~~~~~~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~~~~d~~~~~k 188 (357)
T PRK02201 109 VYPIAQIILSIMASQSLSELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYKKDKQMKQR 188 (357)
T ss_pred HHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCHHHHHH
Confidence 35555544333 344567899999999999999999999999999999999999999999999987654 1
Q ss_pred hHHHHHHHHHHhhhhCCCCchhHHHHHHHHhHHHHHHHHHHHHhhhcCCCCCCccccccccccCCCCCC------CchhH
Q 008246 170 RFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPH------GVLGS 243 (572)
Q Consensus 170 ~~~e~~~l~kk~~~~~g~~~~~~~~lp~liQ~Pifi~~~~~lr~m~~~~~p~l~~~g~lW~~dLt~~Dp------~~~~~ 243 (572)
.++|++++|||+ ||+|+. ..+|+|+|+|||+++|+++|.+. ++....|+|+ ||+.+|+ .+.+.
T Consensus 189 ~q~e~~~Lykk~----ginP~~-gclP~LiQ~Pif~aly~vl~~~~-----~l~~~~flgi-dLs~~~~~~~~~~~~~~l 257 (357)
T PRK02201 189 KQQEIQELYKKH----NISPFS-PFVQMFVTLPIFIAVYRVVQSLP-----SIKVTTWLGI-DLSATSWQEIFAGNWIYL 257 (357)
T ss_pred HHHHHHHHHHHc----CCCcHH-HHHHHHHHHHHHHHHHHHHHhhH-----hhccCCCccc-ccCCCChhhhccccchHH
Confidence 357899999998 676653 45899999999999999999985 6778889999 9999873 12244
Q ss_pred HHHHHHHHHHHHHHHHhc----ccccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHHHHHHHH
Q 008246 244 IFPVLMAGLHYTNVQLSF----GASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLA 319 (572)
Q Consensus 244 iLPil~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~k~~k~~l~~~~l~~~~~~~~~Pagl~lYWi~s~~~sl~Q~~~ 319 (572)
++++++++++++++.+.. +..+....+..+.+..+.++.|+.+|++.+++++..+|+||.|||++||+|+++|+++
T Consensus 258 ~l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi~~~~~~~~~PaGL~LYW~~snl~tI~Qq~~ 337 (357)
T PRK02201 258 PILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGVIFAAGVQIYWIIGGIWTILQTLG 337 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777765543 2111000011111234556678889999988999999999999999999999999999
Q ss_pred HcCHHHHhhh
Q 008246 320 LKHPASRTML 329 (572)
Q Consensus 320 lr~~~~r~~l 329 (572)
+++-.-|+..
T Consensus 338 i~~~~k~~~~ 347 (357)
T PRK02201 338 IHYFKKRKFY 347 (357)
T ss_pred HHHHHHHHHH
Confidence 9865434333
No 12
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=6.8e-36 Score=304.24 Aligned_cols=215 Identities=21% Similarity=0.352 Sum_probs=163.4
Q ss_pred CcchHHHHH-HHHHHHhh--------hcCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCCCCCCch-
Q 008246 100 SSLPVRALI-SFLDTYHD--------FTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK- 169 (572)
Q Consensus 100 ~~~pv~~v~-~~l~~lh~--------~~glpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~~- 169 (572)
..+|+.++. .++.++|. .+|+|||++|+++|+++|++++|++++|+|+++||++++|++++|++||++++
T Consensus 11 i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~kyk~~~~ 90 (329)
T PRK01315 11 IMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEKYKGDRE 90 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhHHH
Confidence 478887653 44455553 46899999999999999999999999999999999999999999999877654
Q ss_pred -hHHHHHHHHHHhhhhCCCCchhHHHHHHHHhHHHHHHHHHHHHhhhcCC----------CCCCccccccccccCCCC--
Q 008246 170 -RFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDG----------HPGFDCGGIWWFQNLTEY-- 236 (572)
Q Consensus 170 -~~~e~~~l~kk~~~~~g~~~~~~~~lp~liQ~Pifi~~~~~lr~m~~~~----------~p~l~~~g~lW~~dLt~~-- 236 (572)
.++|++++|||+ ||+|+. ..+|+|+|+|||+++|++||+++... .+++..+.++|+ +|+.+
T Consensus 91 ~~~~e~~~Lykk~----ginp~~-gclp~liQ~Pif~alf~~l~~~~~~~~~~~~~~~~~~~s~~~~~~fg~-~L~~~f~ 164 (329)
T PRK01315 91 RMSQEMMKLYKET----GTNPLS-SCLPLLLQMPIFFALYRVLDSAASRGDGIGPINPPLLESFRHAHIFGA-PLAATFL 164 (329)
T ss_pred HHHHHHHHHHHHc----CCCchH-HHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhHHHhhhccccccc-ccccccc
Confidence 468999999998 677764 46899999999999999999876421 124445666665 23322
Q ss_pred ---CCC-----chhHHHHHHHHHHHHHHHHHhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHh
Q 008246 237 ---PHG-----VLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVT 308 (572)
Q Consensus 237 ---Dp~-----~~~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~l~~~~~~~~~Pagl~lYWi~ 308 (572)
+++ ..+.|||+++++++++++........... +. .+++.+.+|.|+++|++++++++.++|+||++||++
T Consensus 165 ~~~~~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~~-~~-~~~~~~~~K~M~~imPim~~~~~~~fPaGL~LYW~~ 242 (329)
T PRK01315 165 QALNAGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPPE-AK-TGPMAQQQKMLLYLFPLMFLVSGIAFPVGVLFYWLT 242 (329)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-cc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 12468899999999988754433221111 11 123345677788999999999999999999999999
Q ss_pred hhHHHHHHHHHHcC
Q 008246 309 NSSFSIVQQLALKH 322 (572)
Q Consensus 309 s~~~sl~Q~~~lr~ 322 (572)
||+|+++|++++.+
T Consensus 243 snl~si~Qq~~v~r 256 (329)
T PRK01315 243 SNVWTMGQQFYVIR 256 (329)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988653
No 13
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=100.00 E-value=2.8e-34 Score=299.74 Aligned_cols=223 Identities=18% Similarity=0.256 Sum_probs=160.9
Q ss_pred CcchHHHHHHHHHH-Hhhhc----CChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCCCCCCch-----
Q 008246 100 SSLPVRALISFLDT-YHDFT----GFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK----- 169 (572)
Q Consensus 100 ~~~pv~~v~~~l~~-lh~~~----glpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~~----- 169 (572)
..+|+++|.+++.. +++.. |+|||++|+++||+||++++|++++|.++++||+.++|++++|+++|++++
T Consensus 5 ~~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~d~e~~ 84 (429)
T PRK00247 5 FIYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDEASI 84 (429)
T ss_pred HHHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCHHHH
Confidence 47898888776654 34333 679999999999999999999999999999999999999999999876553
Q ss_pred --hHHHHHHHHHHhhhhCCCCchhHHHHHHHHhHHHHHHHHHHHHhhhcCCCCCCc------------------------
Q 008246 170 --RFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFD------------------------ 223 (572)
Q Consensus 170 --~~~e~~~l~kk~~~~~g~~~~~~~~lp~liQ~Pifi~~~~~lr~m~~~~~p~l~------------------------ 223 (572)
.++|++++||++ ||+|+. ..+|+|+|+|||+++|++||+|+. +.+|+.
T Consensus 85 ~~~qqe~~~LyKe~----ginP~~-gcLP~LIQiPIfigLy~vir~ma~-~~~Gl~~~~~~~ig~l~~~~v~sfl~a~~f 158 (429)
T PRK00247 85 RELQQKQKDLNKEY----GYNPLA-GCVPALIQIPVFLGLYQVLLRMAR-PEGGLENPVHQPIGFLTSEEVESFLQGRVF 158 (429)
T ss_pred HHHHHHHHHHHHHc----CCCchH-HHHHHHHHHHHHHHHHHHHHhccc-cCCccccccccccccCCHHHHHHHHhcccc
Confidence 246789999998 666653 459999999999999999999973 334432
Q ss_pred -----------cccccccccCCCCCCCchhHHHHHH--HHHHHHHHHHHhcccccC--CccchhhhHHHHHHHHHHHHHH
Q 008246 224 -----------CGGIWWFQNLTEYPHGVLGSIFPVL--MAGLHYTNVQLSFGASSL--GKENGLLGLLAKYYKSYLNLMT 288 (572)
Q Consensus 224 -----------~~g~lW~~dLt~~Dp~~~~~iLPil--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~k~~l~~~~ 288 (572)
+++++|+ +.+.+|. .+++||++ ++++++++..++...+.. ..+++....+.|+|..|++++|
T Consensus 159 GvpL~~~~sm~~e~~~~~-~~~~~~v--~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~~~~~k~m~~m~~~~P 235 (429)
T PRK00247 159 NVPLPAYVSMPAEQLAYL-GTTQATV--LAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILAP 235 (429)
T ss_pred CCCcccccccchhhhhhc-cCCccch--HHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHhH
Confidence 2222333 2233332 24788854 455566777776554211 1122222334566777777888
Q ss_pred HHHHHHhhh--hhhhhHHHHHhhhHHHHHHHHHHcCHHHHhhhCCC
Q 008246 289 LPLFFLGYY--IPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLP 332 (572)
Q Consensus 289 l~~~~~~~~--~Pagl~lYWi~s~~~sl~Q~~~lr~~~~r~~lgip 332 (572)
+++++++++ +|+||+|||++||+|+++|++++. ..+++.+.++
T Consensus 236 im~~~~g~~~~~PaallLYWv~snlwtl~Qq~i~~-~~l~~~~P~~ 280 (429)
T PRK00247 236 IFPLSLGLTGPFPTAIALYWVANNLWTLIQNIIMY-LILERKYPLT 280 (429)
T ss_pred HHHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHH-HHHHHhcCCC
Confidence 887776655 799999999999999999999875 3345554443
No 14
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-30 Score=271.79 Aligned_cols=220 Identities=27% Similarity=0.436 Sum_probs=185.0
Q ss_pred CCCCcchHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCCCCCCc----h---
Q 008246 97 GEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG----K--- 169 (572)
Q Consensus 97 g~~~~~pv~~v~~~l~~lh~~~glpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~~i~~~~~~~----~--- 169 (572)
+..+|.|+..+++.|+.+|.++|+|||++|+..|+.+|..++|+.++++|+.+|++++.|+++.+.++.... .
T Consensus 77 ~~~~~~p~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~~~~~~~ 156 (372)
T KOG1239|consen 77 ALSSWRPVATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQDNNALL 156 (372)
T ss_pred HhcccCchhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhccccchH
Confidence 477899999999999999999999999999999999999999999999999999999999999887542221 1
Q ss_pred -hHHHHHHHHHHhhhhCCCCchhHHHHHHHHhHHHHHHHHHHHHhhhcCCCCCCccccccccccCCCCCCCchhHHHHHH
Q 008246 170 -RFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVL 248 (572)
Q Consensus 170 -~~~e~~~l~kk~~~~~g~~~~~~~~lp~liQ~Pifi~~~~~lr~m~~~~~p~l~~~g~lW~~dLt~~Dp~~~~~iLPil 248 (572)
-++++..++++| |++| +++.+| ++|+|+|+++|++||.|+ .+++++.++|++||+||+.+|| ++++|++
T Consensus 157 ~~q~~~~~l~~~~----~v~~-~~l~~~-v~q~~l~~sff~air~ma-~~v~~f~t~g~~wf~dLt~~dp---~~ilp~i 226 (372)
T KOG1239|consen 157 SWQEEQKLLVKKY----GVKP-KQLALP-VVQGPLFISFFMAIRVMA-VPVPSFTTGGLLWFPDLTGPDP---LYILPGI 226 (372)
T ss_pred HHHHHHHhhhhhc----CCCc-chhhhh-hhcchhHHHHHHHHHHhh-ccccccchhhHHhcccccccCc---chhhHHH
Confidence 245678888887 6776 555454 899999999999999999 8999999999999999999999 8999999
Q ss_pred HHHHHHHHHHHhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHHHHHHHHHcCHHHHhh
Q 008246 249 MAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTM 328 (572)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~l~~~~l~~~~~~~~~Pagl~lYWi~s~~~sl~Q~~~lr~~~~r~~ 328 (572)
+++++..+++++...... . ..+...|+.+..++++-.+.++.++|+++++||+ |+++|..++|. .||+.
T Consensus 227 t~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~ll~~~~t~~~~~a~~~ywl----~s~~~~~vlr~-~vr~~ 295 (372)
T KOG1239|consen 227 TLATLTLFIELGAETGLS---S---SKLLPAMKSFIRILPLLSLASTMQFPSAIFVYWL----FSLVQGLVLRS-EVRKK 295 (372)
T ss_pred HHHHHHHHHHHHHHhhhh---c---ccccchhHHHHHHhhhhhhhhhhhhhhhHHhhhh----hHHHHHHHhHH-HHHHh
Confidence 999999999886543111 1 0112334555555555555566899999999999 99999999999 99999
Q ss_pred hCCCCCCCC
Q 008246 329 LGLPDKVVP 337 (572)
Q Consensus 329 lgip~~~~~ 337 (572)
+|+|...++
T Consensus 296 l~~~~~~~~ 304 (372)
T KOG1239|consen 296 LGIPDVPSI 304 (372)
T ss_pred cCCCCCCCC
Confidence 999999886
No 15
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=99.95 E-value=2e-27 Score=235.76 Aligned_cols=104 Identities=18% Similarity=0.288 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCCC----CCCCCCCCch--hHHHHHH
Q 008246 103 PVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLP----PPFPPPLSGK--RFVDQIS 176 (572)
Q Consensus 103 pv~~v~~~l~~lh~~~glpW~~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~l~----~i~~~~~~~~--~~~e~~~ 176 (572)
-..++..+++++|..+| +||++|+++|++||++++|++++|+|+++||+.+||+|+ +|++||++++ .++|+++
T Consensus 9 ~~~il~~iL~f~y~~vg-swGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYKdDpqk~QqEmmk 87 (375)
T PRK02654 9 SNNVMLPILDFFYGIVP-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYKNDPQKQQEEMGK 87 (375)
T ss_pred HHhHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhcCCHHHHHHHHHH
Confidence 33567888999999888 999999999999999999999999999999999999996 5888777664 4689999
Q ss_pred HHHHhh-hhCCCCchhHHHHHHHHhHHHHHHHHHHHHhh
Q 008246 177 LFRREK-RAAGCPSLLWFIASFAIQVPCFLVGVTSIRRM 214 (572)
Q Consensus 177 l~kk~~-~~~g~~~~~~~~lp~liQ~Pifi~~~~~lr~m 214 (572)
+|||++ +..|| +|+|+|+|||+++|.++|..
T Consensus 88 LYKE~GNPlaGC-------LP~LIQmPIF~aLY~~LR~s 119 (375)
T PRK02654 88 LMKEFGNPLAGC-------LPLLVQMPILFALFATLRGS 119 (375)
T ss_pred HHHHcCCChhhH-------HHHHHHHHHHHHHHHHHHhC
Confidence 999996 44667 99999999999999999984
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.72 E-value=9.3e-17 Score=169.41 Aligned_cols=174 Identities=17% Similarity=0.183 Sum_probs=150.0
Q ss_pred chhhhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 008246 356 PAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFL 435 (572)
Q Consensus 356 ~~~~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~ 435 (572)
..|+++++.+|-.+++++++|..+-+.|+.++|+++|.+||++.|+++++.++||.+|.++|.+++|...|++|++.
T Consensus 307 ~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--- 383 (966)
T KOG4626|consen 307 DTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--- 383 (966)
T ss_pred HHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh---
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred cCCCCChhhhhHHHHHHHHHHHHHHHhhchh-----hHHHHHhhhh-------hHhhhhhhccHHHHHHHHHHHhcCCCC
Q 008246 436 AGHPTEPEAIDLLIVASQWSGVACIRQAAHN-----FFELVQQGQL-------KLLSFVSQEKWEEGIAHLERIGNLKEP 503 (572)
Q Consensus 436 ~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~-----~~~a~~~~~~-------~~~~~~~~g~~~eAi~~l~kal~l~~p 503 (572)
.|. ...++.++|.+|.++|..+ +.+++...+. +.++|-++|+.++|+++|.+|+.
T Consensus 384 --~p~-------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~---- 450 (966)
T KOG4626|consen 384 --FPE-------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ---- 450 (966)
T ss_pred --Chh-------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh----
Confidence 333 3457889999999999443 2344433332 34567889999999999999999
Q ss_pred CCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008246 504 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 549 (572)
Q Consensus 504 ~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~ 549 (572)
.+|. +.+++.+||.+|...|+..+|+..|+.+|+++|++.++
T Consensus 451 ~nPt----~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 451 INPT----FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred cCcH----HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence 5663 66888999999999999999999999999999998764
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.72 E-value=3.4e-17 Score=172.67 Aligned_cols=181 Identities=17% Similarity=0.148 Sum_probs=149.7
Q ss_pred hhhhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q 008246 357 AKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436 (572)
Q Consensus 357 ~~~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~ 436 (572)
-|++++...|.++.++.++|..|.++|..|-|+..|++||+++|+.++|+.+||.++...|+..||+++|.+|+.+
T Consensus 274 ~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l---- 349 (966)
T KOG4626|consen 274 CYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL---- 349 (966)
T ss_pred HHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh----
Confidence 5688899999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhh--------------HhhhhhhccHHHHHHHHHHHhcCCC
Q 008246 437 GHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLK--------------LLSFVSQEKWEEGIAHLERIGNLKE 502 (572)
Q Consensus 437 ~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~--------------~~~~~~~g~~~eAi~~l~kal~l~~ 502 (572)
.|+.+ .+.+++|.++.++| ++.++..++... +..|.++|++++|+.+|+.+++
T Consensus 350 -~p~ha-------dam~NLgni~~E~~--~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--- 416 (966)
T KOG4626|consen 350 -CPNHA-------DAMNNLGNIYREQG--KIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--- 416 (966)
T ss_pred -CCccH-------HHHHHHHHHHHHhc--cchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---
Confidence 56553 45688999999988 444444433321 2347789999999999999999
Q ss_pred CCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccccchH
Q 008246 503 PEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEE 559 (572)
Q Consensus 503 p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~~~~~ 559 (572)
.+|. +.+++.++|..|.++|+.++|+.+|.+|+..+|.+.++..++.....+
T Consensus 417 -I~P~----fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD 468 (966)
T KOG4626|consen 417 -IKPT----FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD 468 (966)
T ss_pred -cCch----HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc
Confidence 5664 557888899999999999999999999999999999987776654443
No 18
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.62 E-value=9.9e-15 Score=138.97 Aligned_cols=147 Identities=24% Similarity=0.273 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
.++.+++|..|++.|++..|...+++||+.||++..+|..++.+|...|+.+.|.+.|++|+.+ +|++.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-----~p~~G------ 103 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL-----APNNG------ 103 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----CCCcc------
Confidence 5678999999999999999999999999999999999999999999999999999999999986 77765
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCC
Q 008246 449 IVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 528 (572)
Q Consensus 449 ~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~ 528 (572)
..+++.|.-++.+| ++++|...|++|+. +|..+.. .+.+.++|.|-.+.|+
T Consensus 104 -dVLNNYG~FLC~qg----------------------~~~eA~q~F~~Al~--~P~Y~~~----s~t~eN~G~Cal~~gq 154 (250)
T COG3063 104 -DVLNNYGAFLCAQG----------------------RPEEAMQQFERALA--DPAYGEP----SDTLENLGLCALKAGQ 154 (250)
T ss_pred -chhhhhhHHHHhCC----------------------ChHHHHHHHHHHHh--CCCCCCc----chhhhhhHHHHhhcCC
Confidence 34677899999999 99999999999998 4444432 3567789999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 529 NAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 529 ~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
.+.|.++|+++|++||++...+.++.+
T Consensus 155 ~~~A~~~l~raL~~dp~~~~~~l~~a~ 181 (250)
T COG3063 155 FDQAEEYLKRALELDPQFPPALLELAR 181 (250)
T ss_pred chhHHHHHHHHHHhCcCCChHHHHHHH
Confidence 999999999999999998765554444
No 19
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.59 E-value=6.5e-15 Score=140.21 Aligned_cols=173 Identities=18% Similarity=0.182 Sum_probs=150.4
Q ss_pred HHHhhhCCCCCCCCCCCCCCccccccccccCCchhhhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH
Q 008246 324 ASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI 403 (572)
Q Consensus 324 ~~r~~lgip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~ 403 (572)
..|-.||+.+...++...++.++. .+++.||.+..++..+|..|...|+.+.|.+.|++|+.++|++.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nle------------kAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G 103 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLE------------KALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG 103 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH------------HHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc
Confidence 346678888888888877766666 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhh
Q 008246 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVS 483 (572)
Q Consensus 404 ~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~ 483 (572)
+++++.|..+..+|++++|..+|++|+. +|.-++.. ..+.++|.|..+.|
T Consensus 104 dVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s----~t~eN~G~Cal~~g-------------------- 153 (250)
T COG3063 104 DVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPS----DTLENLGLCALKAG-------------------- 153 (250)
T ss_pred chhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcc----hhhhhhHHHHhhcC--------------------
Confidence 9999999999999999999999999997 67665332 35789999999999
Q ss_pred hccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 484 QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 484 ~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
+++.|.+.|+++++ .||... .+...++..+++.|++.+|..++++....-+...+
T Consensus 154 --q~~~A~~~l~raL~----~dp~~~----~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~ 208 (250)
T COG3063 154 --QFDQAEEYLKRALE----LDPQFP----PALLELARLHYKAGDYAPARLYLERYQQRGGAQAE 208 (250)
T ss_pred --CchhHHHHHHHHHH----hCcCCC----hHHHHHHHHHHhcccchHHHHHHHHHHhcccccHH
Confidence 99999999999999 455443 34556999999999999999999998877765554
No 20
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=7e-15 Score=157.63 Aligned_cols=177 Identities=21% Similarity=0.210 Sum_probs=130.7
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
+.-++.++..|+.++.+|.++--+++++.|+++|++|+++||+++.||-.+|.=+....++|.|..+|++|+.. +
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-----~ 485 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-----D 485 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-----C
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999975 3
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhhHH-----HHHhhhhh-------HhhhhhhccHHHHHHHHHHHhcCCCCCCC
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNFFE-----LVQQGQLK-------LLSFVSQEKWEEGIAHLERIGNLKEPEEP 506 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~-----a~~~~~~~-------~~~~~~~g~~~eAi~~l~kal~l~~p~dp 506 (572)
|.+ ..|||++|.+|.++++.++++ |++..+.. ...+.+.|+.|+|+..|++|+.+ ||
T Consensus 486 ~rh-------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l----d~ 554 (638)
T KOG1126|consen 486 PRH-------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL----DP 554 (638)
T ss_pred chh-------hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc----CC
Confidence 332 268999999999999555332 33333221 22355566777777777777773 33
Q ss_pred chhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 507 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 507 ~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
.+. -..+..|.++..+++++||...+++.-++-|+..-....+.+
T Consensus 555 kn~----l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgk 599 (638)
T KOG1126|consen 555 KNP----LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGK 599 (638)
T ss_pred CCc----hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 332 123446777777777777777777777777776655444444
No 21
>PRK12370 invasion protein regulator; Provisional
Probab=99.52 E-value=3e-13 Score=150.93 Aligned_cols=151 Identities=15% Similarity=0.069 Sum_probs=126.6
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
.+++..+|.+++++..+|..+...|++++|+..|++|++++|+++.+|+.+|.++...|++++|+.+|++|+++ +
T Consensus 328 ~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-----~ 402 (553)
T PRK12370 328 IKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL-----D 402 (553)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----C
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999986 6
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHH
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV 518 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~ 518 (572)
|.++ .++..++.+++..| ++++|++.++++++..+|.+| .++.+
T Consensus 403 P~~~-------~~~~~~~~~~~~~g----------------------~~eeA~~~~~~~l~~~~p~~~-------~~~~~ 446 (553)
T PRK12370 403 PTRA-------AAGITKLWITYYHT----------------------GIDDAIRLGDELRSQHLQDNP-------ILLSM 446 (553)
T ss_pred CCCh-------hhHHHHHHHHHhcc----------------------CHHHHHHHHHHHHHhccccCH-------HHHHH
Confidence 7653 12334455667778 899999999998873223222 35567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008246 519 LASALCNVGRNAEAEKYLRLAAAHNPQYNELL 550 (572)
Q Consensus 519 Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l 550 (572)
+|.+|..+|++++|+++++++...+|+.....
T Consensus 447 la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~ 478 (553)
T PRK12370 447 QVMFLSLKGKHELARKLTKEISTQEITGLIAV 478 (553)
T ss_pred HHHHHHhCCCHHHHHHHHHHhhhccchhHHHH
Confidence 89999999999999999999888888754433
No 22
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.49 E-value=7.2e-13 Score=121.56 Aligned_cols=127 Identities=14% Similarity=0.086 Sum_probs=106.6
Q ss_pred cccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhc
Q 008246 385 KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAA 464 (572)
Q Consensus 385 ~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~ 464 (572)
..--+.+|+++++.||++ ++.+|.++...|++++|.++|++++.. +|.+. .++..+|.++...|
T Consensus 9 ~~~~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~-------~a~~~lg~~~~~~g- 72 (144)
T PRK15359 9 NKIPEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMA-----QPWSW-------RAHIALAGTWMMLK- 72 (144)
T ss_pred cCCHHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcH-------HHHHHHHHHHHHHh-
Confidence 344678999999999986 667899999999999999999999975 55543 46788999999999
Q ss_pred hhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008246 465 HNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 544 (572)
Q Consensus 465 ~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P 544 (572)
++++|+..|+++++ .+|++. .++..+|.++...|++++|++.|+++++.+|
T Consensus 73 ---------------------~~~~A~~~y~~Al~----l~p~~~----~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 73 ---------------------EYTTAINFYGHALM----LDASHP----EPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred ---------------------hHHHHHHHHHHHHh----cCCCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999 345432 5677899999999999999999999999999
Q ss_pred CCHHHHHhcccc
Q 008246 545 QYNELLEQLENN 556 (572)
Q Consensus 545 ~~~~~l~~l~~~ 556 (572)
++.+......+.
T Consensus 124 ~~~~~~~~~~~~ 135 (144)
T PRK15359 124 ADASWSEIRQNA 135 (144)
T ss_pred CChHHHHHHHHH
Confidence 998887766653
No 23
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1.2e-13 Score=148.21 Aligned_cols=170 Identities=16% Similarity=0.189 Sum_probs=146.0
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
+++|.+||..+.+|..+|..+....++|.|..+|++||..||++.+|||.||.+|.++++++.|+-+|++|+++ +
T Consensus 445 ~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I-----N 519 (638)
T KOG1126|consen 445 KRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI-----N 519 (638)
T ss_pred HHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC-----C
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999986 7
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchh-----hHHHHHhhhh-------hHhhhhhhccHHHHHHHHHHHhcCCCCCCC
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHN-----FFELVQQGQL-------KLLSFVSQEKWEEGIAHLERIGNLKEPEEP 506 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~-----~~~a~~~~~~-------~~~~~~~~g~~~eAi~~l~kal~l~~p~dp 506 (572)
|.+. ......|..+.+.|+.+ +.+|+-+++. ++.++...++++||+..+++.-++ -|
T Consensus 520 P~ns-------vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~----vP 588 (638)
T KOG1126|consen 520 PSNS-------VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL----VP 588 (638)
T ss_pred ccch-------hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh----Cc
Confidence 7764 23566789999999666 2445544443 356788899999999999999883 45
Q ss_pred chhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 507 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 507 ~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
+.. .++..+|.+|.+.|+.+.|+..|-=|.++||.-..
T Consensus 589 ~es----~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 589 QES----SVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred chH----HHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 433 45677999999999999999999999999998655
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.47 E-value=8.5e-13 Score=149.31 Aligned_cols=145 Identities=16% Similarity=0.142 Sum_probs=105.2
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008246 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P 439 (572)
+++..+|..+..++.+|..+...|++++|+..|+++++.+|+++++++.+|.++...|++++|+.+|++++++ +|
T Consensus 356 kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-----~P 430 (615)
T TIGR00990 356 KSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-----DP 430 (615)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----Cc
Confidence 4555556566666666666666666666666666666666666666666666666666666666666666653 44
Q ss_pred CChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHH
Q 008246 440 TEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL 519 (572)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~L 519 (572)
++. .++..+|.++.++| ++++|+..|+++++ .+|.+. .++..+
T Consensus 431 ~~~-------~~~~~la~~~~~~g----------------------~~~eA~~~~~~al~----~~P~~~----~~~~~l 473 (615)
T TIGR00990 431 DFI-------FSHIQLGVTQYKEG----------------------SIASSMATFRRCKK----NFPEAP----DVYNYY 473 (615)
T ss_pred cCH-------HHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHH----hCCCCh----HHHHHH
Confidence 332 23555666666666 99999999999999 455433 456779
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 520 ASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 520 g~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
|.++...|++++|++.|+++++++|+.
T Consensus 474 g~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 474 GELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999874
No 25
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.47 E-value=2.7e-12 Score=132.07 Aligned_cols=172 Identities=15% Similarity=0.127 Sum_probs=107.1
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
.+++..+|.++++++.+|..+...|++++|+..|+++++++|++..+|.++|.++...|++++|++.|++++++ +
T Consensus 88 ~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~ 162 (296)
T PRK11189 88 SQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----D 162 (296)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C
Confidence 45677777777788888888888888888888888888888888888888888888888888888888888775 5
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhh-----------hHhhhhhhccHHH--HHHHHHHHhcCCCCCC
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQL-----------KLLSFVSQEKWEE--GIAHLERIGNLKEPEE 505 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~-----------~~~~~~~~g~~~e--Ai~~l~kal~l~~p~d 505 (572)
|+++ . . ..+... ....+ +..++...... ...+....|+.++ +++.+.+.++ ..
T Consensus 163 P~~~-~----~--~~~~~l-~~~~~--~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~----~~ 228 (296)
T PRK11189 163 PNDP-Y----R--ALWLYL-AESKL--DPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGAT----DN 228 (296)
T ss_pred CCCH-H----H--HHHHHH-HHccC--CHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCC----Cc
Confidence 6553 1 0 111111 11111 12222111100 0112223444433 2322222222 22
Q ss_pred CchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHH
Q 008246 506 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP-QYNEL 549 (572)
Q Consensus 506 p~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P-~~~~~ 549 (572)
+.......+++.++|.++.+.|++++|+.+|+++++.+| ++.+.
T Consensus 229 ~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~ 273 (296)
T PRK11189 229 TELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH 273 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence 222233456888999999999999999999999999997 65553
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.45 E-value=1.6e-12 Score=151.98 Aligned_cols=162 Identities=14% Similarity=0.048 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
...++.+|..+.+.|++++|+.+|+++++.+|++...+..++..+.+.|++++|+.+|++|+++ +|+ .
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-----~P~-~------ 609 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI-----APS-A------ 609 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CCC-H------
Confidence 3456666777777777777777777777777777666666666666667777777777777764 332 1
Q ss_pred HHHHHHHHHHHHHhhchhh-----HHHHHhhh-------hhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHH
Q 008246 449 IVASQWSGVACIRQAAHNF-----FELVQQGQ-------LKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL 516 (572)
Q Consensus 449 ~~a~~~lG~~~~~~g~~~~-----~~a~~~~~-------~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al 516 (572)
.++.++|.++.+.|+.+. .+++..++ ..+.++...|++++|++.|+++++ .+|++. .++
T Consensus 610 -~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~----l~P~~~----~a~ 680 (987)
T PRK09782 610 -NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK----GLPDDP----ALI 680 (987)
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCH----HHH
Confidence 345666777777764442 11222221 123345666799999999999999 455443 567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008246 517 VVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 551 (572)
Q Consensus 517 ~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~ 551 (572)
.++|.++...|++++|+++|+++++++|+......
T Consensus 681 ~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~ 715 (987)
T PRK09782 681 RQLAYVNQRLDDMAATQHYARLVIDDIDNQALITP 715 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhh
Confidence 78999999999999999999999999999866543
No 27
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=1.6e-12 Score=145.03 Aligned_cols=148 Identities=12% Similarity=0.005 Sum_probs=125.6
Q ss_pred hhccccCCCCHHHHHHHHHHHHhc---------CCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008246 359 QLKISVENLTPKELIALSVKFLSK---------GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~---------g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rA 429 (572)
.+++..+|.++..+..+|.++... +++++|+..+++|+++||+++.+|..+|.++...|++++|+.+|++|
T Consensus 285 ~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~A 364 (553)
T PRK12370 285 TQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQA 364 (553)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 578999999999999999876633 44789999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchh
Q 008246 430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSK 509 (572)
Q Consensus 430 l~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~ 509 (572)
+++ +|+++ .+++.+|.++...| ++++|+.+++++++ .+|.+.
T Consensus 365 l~l-----~P~~~-------~a~~~lg~~l~~~G----------------------~~~eAi~~~~~Al~----l~P~~~ 406 (553)
T PRK12370 365 NLL-----SPISA-------DIKYYYGWNLFMAG----------------------QLEEALQTINECLK----LDPTRA 406 (553)
T ss_pred HHh-----CCCCH-------HHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHh----cCCCCh
Confidence 986 77764 36788999999999 99999999999999 455432
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Q 008246 510 AHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN-PQYNE 548 (572)
Q Consensus 510 ~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~-P~~~~ 548 (572)
. ....++.+++..|++++|+++++++++.+ |++..
T Consensus 407 ~----~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~ 442 (553)
T PRK12370 407 A----AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPI 442 (553)
T ss_pred h----hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHH
Confidence 2 22345667788999999999999999885 66654
No 28
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.44 E-value=2e-12 Score=124.98 Aligned_cols=130 Identities=13% Similarity=0.081 Sum_probs=110.2
Q ss_pred cCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHH-H
Q 008246 382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC-I 460 (572)
Q Consensus 382 ~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~-~ 460 (572)
.++.++++..++++++.+|+|+++|+.+|.+|...|++++|+.+|++|+++ +|+++ ..+..+|.++ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~~-------~~~~~lA~aL~~ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-----RGENA-------ELYAALATVLYY 119 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH-------HHHHHHHHHHHH
Confidence 566688999999999999999999999999999999999999999999986 66654 3567778875 5
Q ss_pred HhhchhhHHHHHhhhhhHhhhhhhcc--HHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008246 461 RQAAHNFFELVQQGQLKLLSFVSQEK--WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 538 (572)
Q Consensus 461 ~~g~~~~~~a~~~~~~~~~~~~~~g~--~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~ 538 (572)
..| + +++|++.++++++ .+|++. .++.++|.++.+.|++++|++++++
T Consensus 120 ~~g----------------------~~~~~~A~~~l~~al~----~dP~~~----~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 120 QAG----------------------QHMTPQTREMIDKALA----LDANEV----TALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred hcC----------------------CCCcHHHHHHHHHHHH----hCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 656 6 5999999999999 566543 5778899999999999999999999
Q ss_pred HHHhCCCCHHHHHhc
Q 008246 539 AAAHNPQYNELLEQL 553 (572)
Q Consensus 539 aL~l~P~~~~~l~~l 553 (572)
+++.+|......+.+
T Consensus 170 aL~l~~~~~~r~~~i 184 (198)
T PRK10370 170 VLDLNSPRVNRTQLV 184 (198)
T ss_pred HHhhCCCCccHHHHH
Confidence 999998765544433
No 29
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=7.2e-13 Score=136.75 Aligned_cols=161 Identities=19% Similarity=0.195 Sum_probs=94.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008246 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (572)
Q Consensus 361 ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~ 440 (572)
...+|...++..+-.|.-|.-.++.++|+.+|++||++||+...+|..+|.=|.+.++...|++.|++|+++ +|.
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-----~p~ 396 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-----NPR 396 (559)
T ss_pred HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-----Cch
Confidence 445555556666666666666666666666666666666666666666666666666666666666666654 443
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhchh-----hHHHHHhhh-------hhHhhhhhhccHHHHHHHHHHHhcCCCCCCCch
Q 008246 441 EPEAIDLLIVASQWSGVACIRQAAHN-----FFELVQQGQ-------LKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKS 508 (572)
Q Consensus 441 ~~~~~~~~~~a~~~lG~~~~~~g~~~-----~~~a~~~~~-------~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~ 508 (572)
| .+||+++|.+|.-.+-+. +.+|.+..+ .++.||.+.++.+||+++|++++.+. |..
T Consensus 397 D-------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~---dte- 465 (559)
T KOG1155|consen 397 D-------YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG---DTE- 465 (559)
T ss_pred h-------HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc---ccc-
Confidence 3 246666666666555111 111221111 12233444447777777777777642 211
Q ss_pred hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 509 KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 509 ~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~ 541 (572)
..++..||.+|.++++..+|..+|++-++
T Consensus 466 ----~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 ----GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ----hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 14556677777777777777777777665
No 30
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.44 E-value=3e-12 Score=144.89 Aligned_cols=145 Identities=12% Similarity=0.096 Sum_probs=128.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
++.....+..+|..+...|++++|+..|+++++++|++..+|+.+|.++...|++++|+.+|+++++. +|+++
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~-- 399 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSEDP-- 399 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH--
Confidence 45567789999999999999999999999999999999999999999999999999999999999985 66653
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHH
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 524 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~ 524 (572)
.+++.+|.++...| ++++|+..|+++++ .+|++. .++..+|.++.
T Consensus 400 -----~~~~~lg~~~~~~g----------------------~~~~A~~~~~kal~----l~P~~~----~~~~~la~~~~ 444 (615)
T TIGR00990 400 -----DIYYHRAQLHFIKG----------------------EFAQAGKDYQKSID----LDPDFI----FSHIQLGVTQY 444 (615)
T ss_pred -----HHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHH----cCccCH----HHHHHHHHHHH
Confidence 35788999999999 99999999999999 566543 45678999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008246 525 NVGRNAEAEKYLRLAAAHNPQYNELLE 551 (572)
Q Consensus 525 ~~g~~eeA~~~l~~aL~l~P~~~~~l~ 551 (572)
++|++++|+..|+++++.+|++...+.
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~ 471 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYN 471 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999999999999765443
No 31
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=7e-12 Score=121.32 Aligned_cols=162 Identities=22% Similarity=0.224 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
+..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++|+++++. .|.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~------ 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL-----NPNNG------ 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH------
Confidence 5566677777777777777777777777777777777777777777777777777777777753 33332
Q ss_pred HHHHHHHHHHHHHhhchhh-----HHHHHh---------hhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhH
Q 008246 449 IVASQWSGVACIRQAAHNF-----FELVQQ---------GQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYD 514 (572)
Q Consensus 449 ~~a~~~lG~~~~~~g~~~~-----~~a~~~---------~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~ 514 (572)
.++.++|.++...|+.+. .++... ....+.++...|++++|++.++++++ .+|.+. .
T Consensus 100 -~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~----~ 170 (234)
T TIGR02521 100 -DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ----IDPQRP----E 170 (234)
T ss_pred -HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCCh----H
Confidence 234556666666663331 111110 01123445666799999999999999 344432 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008246 515 GLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 550 (572)
Q Consensus 515 al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l 550 (572)
++..+|.++...|++++|..+++++++..|+....+
T Consensus 171 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 206 (234)
T TIGR02521 171 SLLELAELYYLRGQYKDARAYLERYQQTYNQTAESL 206 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 566799999999999999999999999988765543
No 32
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.42 E-value=5.4e-12 Score=142.43 Aligned_cols=139 Identities=16% Similarity=0.106 Sum_probs=124.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
.+-++++++.+|....+.|++++|+..++++++.+|++..++..+|.++.+.+++++|+..++++++. +|++.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-----~p~~~-- 154 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG-----GSSSA-- 154 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-----CCCCH--
Confidence 44568999999999999999999999999999999999999999999999999999999999999975 67664
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHH
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 524 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~ 524 (572)
.+++.+|.++.+.| ++++|+++|+++++ . +|+.. ++++.+|.++.
T Consensus 155 -----~~~~~~a~~l~~~g----------------------~~~~A~~~y~~~~~-~---~p~~~----~~~~~~a~~l~ 199 (694)
T PRK15179 155 -----REILLEAKSWDEIG----------------------QSEQADACFERLSR-Q---HPEFE----NGYVGWAQSLT 199 (694)
T ss_pred -----HHHHHHHHHHHHhc----------------------chHHHHHHHHHHHh-c---CCCcH----HHHHHHHHHHH
Confidence 45778899999999 99999999999998 3 44322 67889999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC
Q 008246 525 NVGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 525 ~~g~~eeA~~~l~~aL~l~P~ 545 (572)
..|+.++|...|+++++...+
T Consensus 200 ~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 200 RRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HcCCHHHHHHHHHHHHHhhCc
Confidence 999999999999999998743
No 33
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=3.7e-12 Score=131.59 Aligned_cols=129 Identities=11% Similarity=0.067 Sum_probs=91.5
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
++++..+|....++...|..+.+..+...|+..|++|++++|.|.+||+.||+.|.-.+-+.-|+-+|++|... .
T Consensus 354 kRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-----k 428 (559)
T KOG1155|consen 354 KRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-----K 428 (559)
T ss_pred HHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-----C
Confidence 56777777777777777888888888888888888888888888888888888888888888888888888764 5
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhh-----HHHHHhhhh-------hHhhhhhhccHHHHHHHHHHHhc
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNF-----FELVQQGQL-------KLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~~~~-------~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
|+|. +.|..+|.+|.+.++-+- .+++..... .+..|.+.++..+|..+|++.++
T Consensus 429 PnDs-------Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 429 PNDS-------RLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred CCch-------HHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5553 456677888777774331 122222111 23345566699999999999987
No 34
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=1.8e-11 Score=118.48 Aligned_cols=132 Identities=21% Similarity=0.153 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhh-----HHHHHhhh-
Q 008246 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNF-----FELVQQGQ- 475 (572)
Q Consensus 402 ~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~~~- 475 (572)
.+.+++.+|.++...|++++|++.++++++. +|++. .++..+|.++...|+.+. .++.....
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH-----DPDDY-------LAYLALALYYQQLGELEKAEDSFRRALTLNPN 97 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4789999999999999999999999999975 55442 456778999999985442 12222221
Q ss_pred ------hhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008246 476 ------LKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 549 (572)
Q Consensus 476 ------~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~ 549 (572)
..+..+...|++++|++.++++++. +..+. ....+..+|.++...|++++|.++++++++.+|++...
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 171 (234)
T TIGR02521 98 NGDVLNNYGTFLCQQGKYEQAMQQFEQAIED--PLYPQ----PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPES 171 (234)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccc----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHH
Confidence 2245677899999999999999983 12222 12456679999999999999999999999999987654
Q ss_pred HH
Q 008246 550 LE 551 (572)
Q Consensus 550 l~ 551 (572)
+.
T Consensus 172 ~~ 173 (234)
T TIGR02521 172 LL 173 (234)
T ss_pred HH
Confidence 43
No 35
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.38 E-value=1.2e-11 Score=140.65 Aligned_cols=146 Identities=16% Similarity=0.193 Sum_probs=126.5
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCccc----HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKER----PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF 434 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~----A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~ 434 (572)
..++..+|.++..++.+|..+...|++++ |+..|+++++.+|+++.++..+|.++...|++++|+.++++++++
T Consensus 236 ~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-- 313 (656)
T PRK15174 236 ESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-- 313 (656)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 45667778889999999999999999996 899999999999999999999999999999999999999999985
Q ss_pred hcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhH
Q 008246 435 LAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYD 514 (572)
Q Consensus 435 ~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~ 514 (572)
+|+++ .++.++|.++.+.| ++++|++.|+++++ .+|... .
T Consensus 314 ---~P~~~-------~a~~~La~~l~~~G----------------------~~~eA~~~l~~al~----~~P~~~----~ 353 (656)
T PRK15174 314 ---HPDLP-------YVRAMYARALRQVG----------------------QYTAASDEFVQLAR----EKGVTS----K 353 (656)
T ss_pred ---CCCCH-------HHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHH----hCccch----H
Confidence 66653 35677899999999 99999999999998 455432 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 515 GLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 515 al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
.+..+|.++...|++++|+++|+++++.+|++
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 34457899999999999999999999999884
No 36
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.37 E-value=9.2e-12 Score=114.22 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=94.7
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
.++++.+|. .++.+|..+...|++++|+.+|+++++.+|++.++|+.+|.++...|++++|+.+|++|+++ +
T Consensus 17 ~~al~~~p~---~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-----~ 88 (144)
T PRK15359 17 KQLLSVDPE---TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-----D 88 (144)
T ss_pred HHHHHcCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----C
Confidence 566766654 47788999999999999999999999999999999999999999999999999999999985 6
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
|+++ .+++++|.++.+.| ++++|++.|+++++
T Consensus 89 p~~~-------~a~~~lg~~l~~~g----------------------~~~eAi~~~~~Al~ 120 (144)
T PRK15359 89 ASHP-------EPVYQTGVCLKMMG----------------------EPGLAREAFQTAIK 120 (144)
T ss_pred CCCc-------HHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHH
Confidence 7664 46788999999999 99999999999999
No 37
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.35 E-value=2.3e-11 Score=138.35 Aligned_cols=74 Identities=12% Similarity=0.073 Sum_probs=68.1
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
.+.+..+|.+++.+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..
T Consensus 100 ~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 100 NKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 36778888889999999999999999999999999999999999999999999999999999999999988764
No 38
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.34 E-value=5.6e-11 Score=117.67 Aligned_cols=157 Identities=18% Similarity=0.153 Sum_probs=126.1
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008246 363 SVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI---NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (572)
Q Consensus 363 ~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~---~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P 439 (572)
+.++..++.++.+|..+...|++++|+..|+++++.+|+++ ++++.+|.++...|++++|+..|+++++. .|
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~-----~p 101 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL-----HP 101 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----Cc
Confidence 55667789999999999999999999999999999999986 68899999999999999999999999986 67
Q ss_pred CChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhh---h---
Q 008246 440 TEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHY---Y--- 513 (572)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~---~--- 513 (572)
+++.. ..+++.+|.++.+.. ..++...|++++|++.|+++++ .+|++...+ .
T Consensus 102 ~~~~~----~~a~~~~g~~~~~~~--------------~~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~a~~~~~ 159 (235)
T TIGR03302 102 NHPDA----DYAYYLRGLSNYNQI--------------DRVDRDQTAAREAFEAFQELIR----RYPNSEYAPDAKKRMD 159 (235)
T ss_pred CCCch----HHHHHHHHHHHHHhc--------------ccccCCHHHHHHHHHHHHHHHH----HCCCChhHHHHHHHHH
Confidence 65421 235778888887652 1122334489999999999998 455543211 0
Q ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 514 -------DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 514 -------~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
.....+|..+...|++++|+..|+++++..|+.
T Consensus 160 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (235)
T TIGR03302 160 YLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDT 199 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Confidence 112367899999999999999999999998764
No 39
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.34 E-value=3.6e-11 Score=108.27 Aligned_cols=124 Identities=19% Similarity=0.190 Sum_probs=105.1
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHH
Q 008246 390 PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFE 469 (572)
Q Consensus 390 ~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~ 469 (572)
+.|+++++.+|++..+.+.+|..+...|++++|.+.|++++.. +|.++ .++..+|.++...|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~-------~~~~~la~~~~~~~------ 65 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY-----DPYNS-------RYWLGLAACCQMLK------ 65 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCcH-------HHHHHHHHHHHHHH------
Confidence 5789999999999999999999999999999999999999875 55543 46788899999999
Q ss_pred HHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008246 470 LVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 549 (572)
Q Consensus 470 a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~ 549 (572)
++++|+..++++++ .+|.+. ..+..+|.++...|++++|.++++++++.+|+....
T Consensus 66 ----------------~~~~A~~~~~~~~~----~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 66 ----------------EYEEAIDAYALAAA----LDPDDP----RPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred ----------------HHHHHHHHHHHHHh----cCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 99999999999998 344432 456679999999999999999999999999998775
Q ss_pred HHhccc
Q 008246 550 LEQLEN 555 (572)
Q Consensus 550 l~~l~~ 555 (572)
.+...+
T Consensus 122 ~~~~~~ 127 (135)
T TIGR02552 122 SELKER 127 (135)
T ss_pred HHHHHH
Confidence 554444
No 40
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.33 E-value=3.4e-11 Score=123.95 Aligned_cols=131 Identities=18% Similarity=0.107 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
+..++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|++.|++|+++ +|++.
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~P~~~------ 132 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPTYN------ 132 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH------
Confidence 6679999999999999999999999999999999999999999999999999999999999986 66653
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCC
Q 008246 449 IVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 528 (572)
Q Consensus 449 ~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~ 528 (572)
.++.++|.++...| ++++|++.++++++ .+|++.. ... ...+....++
T Consensus 133 -~a~~~lg~~l~~~g----------------------~~~eA~~~~~~al~----~~P~~~~--~~~---~~~l~~~~~~ 180 (296)
T PRK11189 133 -YAYLNRGIALYYGG----------------------RYELAQDDLLAFYQ----DDPNDPY--RAL---WLYLAESKLD 180 (296)
T ss_pred -HHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHH----hCCCCHH--HHH---HHHHHHccCC
Confidence 46788999999999 88888888888888 3443321 111 1123345677
Q ss_pred HHHHHHHHHHHHHh
Q 008246 529 NAEAEKYLRLAAAH 542 (572)
Q Consensus 529 ~eeA~~~l~~aL~l 542 (572)
+++|++.+++++..
T Consensus 181 ~~~A~~~l~~~~~~ 194 (296)
T PRK11189 181 PKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888888776654
No 41
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.29 E-value=4.9e-11 Score=115.35 Aligned_cols=113 Identities=18% Similarity=0.217 Sum_probs=102.3
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhhhh
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQ-LQKGL--LEEAVEYLECAISKLFL 435 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~-~~~g~--~~eA~~~~~rAl~~l~~ 435 (572)
.+++..+|.+++.++.+|..+...|++++|+..|++|++++|++++++..+|.++ ...|+ +++|.+.+++|++.
T Consensus 63 ~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--- 139 (198)
T PRK10370 63 QDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--- 139 (198)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh---
Confidence 6788999999999999999999999999999999999999999999999999975 77788 59999999999986
Q ss_pred cCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCC
Q 008246 436 AGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEE 505 (572)
Q Consensus 436 ~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~d 505 (572)
+|++. .+++.+|..+.+.| ++++|+.++++++++.+|++
T Consensus 140 --dP~~~-------~al~~LA~~~~~~g----------------------~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 140 --DANEV-------TALMLLASDAFMQA----------------------DYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred --CCCCh-------hHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHhhCCCCc
Confidence 67664 46788999999999 99999999999999755544
No 42
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.27 E-value=1e-10 Score=136.94 Aligned_cols=175 Identities=14% Similarity=0.086 Sum_probs=132.0
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
..++...|.+ ...+.+|..+...|++++|+..|++++...|.+ .+++.+|.++.+.|++++|+.+|+++++. +
T Consensus 500 ~~Al~~~Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l-----~ 572 (987)
T PRK09782 500 LQAEQRQPDA-WQHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQR-----G 572 (987)
T ss_pred HHHHHhCCch-HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----C
Confidence 4455555643 346777888889999999999999998876664 56889999999999999999999999974 4
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhh-----HHHHHhhh------hhHhhhhhhccHHHHHHHHHHHhcCCCCCCCc
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNF-----FELVQQGQ------LKLLSFVSQEKWEEGIAHLERIGNLKEPEEPK 507 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~~~------~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~ 507 (572)
|... ..+..++..+.+.|+.+. .++++.++ ..+.++.+.|++++|++.|+++++ .+|+
T Consensus 573 P~~~-------~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~----l~Pd 641 (987)
T PRK09782 573 LGDN-------ALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALE----LEPN 641 (987)
T ss_pred CccH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCC
Confidence 4432 123334444445564332 22332222 234568889999999999999999 5665
Q ss_pred hhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 508 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 508 ~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
+. .++.++|.++.+.|++++|+++|+++++++|++.+++.++..
T Consensus 642 ~~----~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~ 685 (987)
T PRK09782 642 NS----NYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAY 685 (987)
T ss_pred CH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44 566789999999999999999999999999999876665544
No 43
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.25 E-value=1.3e-10 Score=140.35 Aligned_cols=144 Identities=21% Similarity=0.234 Sum_probs=115.6
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH---HH
Q 008246 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL---LI 449 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~---~~ 449 (572)
..+|..+...|++++|+..|+++++.+|+++++++.+|.+|.++|++++|+.+|++|++. +|++...... ..
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~-----~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL-----DPHSSNRDKWESLLK 347 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCccchhHHHHHHH
Confidence 356889999999999999999999999999999999999999999999999999999985 5654311100 00
Q ss_pred H----HHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHH
Q 008246 450 V----ASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN 525 (572)
Q Consensus 450 ~----a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~ 525 (572)
. .....|.++.+.| ++++|++.|+++++ .+|.+. .++..+|.++..
T Consensus 348 ~~~~~~~~~~g~~~~~~g----------------------~~~eA~~~~~~Al~----~~P~~~----~a~~~Lg~~~~~ 397 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKAN----------------------NLAQAERLYQQARQ----VDNTDS----YAVLGLGDVAMA 397 (1157)
T ss_pred hhhHHHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHH----hCCCCH----HHHHHHHHHHHH
Confidence 0 1112244444444 99999999999999 455433 467789999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008246 526 VGRNAEAEKYLRLAAAHNPQYNELLE 551 (572)
Q Consensus 526 ~g~~eeA~~~l~~aL~l~P~~~~~l~ 551 (572)
.|++++|+++|+++++.+|++...+.
T Consensus 398 ~g~~~eA~~~y~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 398 RKDYAAAERYYQQALRMDPGNTNAVR 423 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999876544
No 44
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.25 E-value=1.3e-10 Score=140.36 Aligned_cols=173 Identities=21% Similarity=0.207 Sum_probs=115.5
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHH--------------HHHHHHHHHHcCCHHHHHH
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINA--------------LILMGQTQLQKGLLEEAVE 424 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a--------------~~~LG~l~~~~g~~~eA~~ 424 (572)
..++..+|.+++.++.+|..+.+.|++++|+.+|+++++.+|++... ...+|.++...|++++|++
T Consensus 293 ~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~ 372 (1157)
T PRK11447 293 QQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAER 372 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 57888899999999999999999999999999999999999987532 2356889999999999999
Q ss_pred HHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhh-----HHHHHhhhh-------hHhhhhhhccHHHHHH
Q 008246 425 YLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNF-----FELVQQGQL-------KLLSFVSQEKWEEGIA 492 (572)
Q Consensus 425 ~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~~~~-------~~~~~~~~g~~~eAi~ 492 (572)
+|++++++ +|++. .++..+|.++..+|+.+. .++.+.++. ....+ ..+++++|+.
T Consensus 373 ~~~~Al~~-----~P~~~-------~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~-~~~~~~~A~~ 439 (1157)
T PRK11447 373 LYQQARQV-----DNTDS-------YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY-RQQSPEKALA 439 (1157)
T ss_pred HHHHHHHh-----CCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999985 66553 357788999999993331 111111111 11122 2334555655
Q ss_pred HHHHHhcCCCCCCCchh-----hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 493 HLERIGNLKEPEEPKSK-----AHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 493 ~l~kal~l~~p~dp~~~-----~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
.++++.. .++... ....+.+..+|.++...|++++|+++|+++++.+|++..
T Consensus 440 ~l~~l~~----~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~ 496 (1157)
T PRK11447 440 FIASLSA----SQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVW 496 (1157)
T ss_pred HHHhCCH----HHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 5544322 000000 000122344566666777777777777777777777554
No 45
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.21 E-value=3.9e-10 Score=119.84 Aligned_cols=139 Identities=26% Similarity=0.278 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~ 449 (572)
..++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|++.|+++++. +|.+ ..
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~------~~ 249 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-----DPEY------LS 249 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----Chhh------HH
Confidence 346788999999999999999999999999999999999999999999999999999999974 3322 22
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCH
Q 008246 450 VASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRN 529 (572)
Q Consensus 450 ~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~ 529 (572)
.++..++.++.+.| ++++|++.++++++ .+|+. .....+|.++.+.|++
T Consensus 250 ~~~~~l~~~~~~~g----------------------~~~~A~~~l~~~~~----~~p~~-----~~~~~la~~~~~~g~~ 298 (389)
T PRK11788 250 EVLPKLMECYQALG----------------------DEAEGLEFLRRALE----EYPGA-----DLLLALAQLLEEQEGP 298 (389)
T ss_pred HHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHH----hCCCc-----hHHHHHHHHHHHhCCH
Confidence 34567788888888 99999999999998 34533 2236789999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHH
Q 008246 530 AEAEKYLRLAAAHNPQYNELL 550 (572)
Q Consensus 530 eeA~~~l~~aL~l~P~~~~~l 550 (572)
++|.+.++++++.+|+...+.
T Consensus 299 ~~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 299 EAAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred HHHHHHHHHHHHhCcCHHHHH
Confidence 999999999999999987544
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=1.1e-10 Score=121.37 Aligned_cols=144 Identities=20% Similarity=0.185 Sum_probs=130.5
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008246 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P 439 (572)
.+|..++.+...|+.+|..|.+..+.++-...|.+|.++||+|+++|+..|++++-.+++++|+.-|++|+++ +|
T Consensus 351 ~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L-----~p 425 (606)
T KOG0547|consen 351 AAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL-----DP 425 (606)
T ss_pred HHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc-----Ch
Confidence 5778888887779999999999999999999999999999999999999999999999999999999999986 55
Q ss_pred CChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHH
Q 008246 440 TEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL 519 (572)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~L 519 (572)
.+ ..++..++.+.++++ +++++...|+.+.+ ..|... +.+...
T Consensus 426 e~-------~~~~iQl~~a~Yr~~----------------------k~~~~m~~Fee~kk----kFP~~~----Evy~~f 468 (606)
T KOG0547|consen 426 EN-------AYAYIQLCCALYRQH----------------------KIAESMKTFEEAKK----KFPNCP----EVYNLF 468 (606)
T ss_pred hh-------hHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHH----hCCCCc----hHHHHH
Confidence 44 357888999999999 99999999999998 666654 455678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008246 520 ASALCNVGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 520 g~~l~~~g~~eeA~~~l~~aL~l~P~ 545 (572)
|.++..++++++|.+.|+.++++.|.
T Consensus 469 AeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 469 AEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999998
No 47
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.20 E-value=2.1e-10 Score=104.81 Aligned_cols=102 Identities=12% Similarity=0.039 Sum_probs=94.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008246 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~ 445 (572)
+.+-+..+..|..+.+.|++++|+..|+-....||.+++.|++||.++..+|++++|+++|.+|+.+ +|+++
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----~~ddp--- 103 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----KIDAP--- 103 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCc---
Confidence 3456789999999999999999999999999999999999999999999999999999999999986 77765
Q ss_pred hHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCC
Q 008246 446 DLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLK 501 (572)
Q Consensus 446 ~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~ 501 (572)
++++++|.++...| +.++|++.|+.++...
T Consensus 104 ----~~~~~ag~c~L~lG----------------------~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 104 ----QAPWAAAECYLACD----------------------NVCYAIKALKAVVRIC 133 (157)
T ss_pred ----hHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHHh
Confidence 45788999999999 9999999999999853
No 48
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.20 E-value=4.1e-10 Score=111.47 Aligned_cols=155 Identities=18% Similarity=0.222 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhhhhcC
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN---ALILMGQTQLQK--------GLLEEAVEYLECAISKLFLAG 437 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~---a~~~LG~l~~~~--------g~~~eA~~~~~rAl~~l~~~~ 437 (572)
.++++.+|..+...|++++|+..|+++++.+|+++. +++.+|.++... |++++|++.|+++++.
T Consensus 70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----- 144 (235)
T TIGR03302 70 EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR----- 144 (235)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-----
Confidence 467899999999999999999999999999999886 799999999887 8999999999999985
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHH
Q 008246 438 HPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLV 517 (572)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~ 517 (572)
+|++.... .+...++......+ ......+..+...|++++|+..|+++++ ..|.+| ...+++.
T Consensus 145 ~p~~~~~~----~a~~~~~~~~~~~~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~----~~~~a~~ 207 (235)
T TIGR03302 145 YPNSEYAP----DAKKRMDYLRNRLA--------GKELYVARFYLKRGAYVAAINRFETVVE-NYPDTP----ATEEALA 207 (235)
T ss_pred CCCChhHH----HHHHHHHHHHHHHH--------HHHHHHHHHHHHcCChHHHHHHHHHHHH-HCCCCc----chHHHHH
Confidence 67664111 12222222211111 1111234557777899999999999998 233333 2346788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008246 518 VLASALCNVGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 518 ~Lg~~l~~~g~~eeA~~~l~~aL~l~P~ 545 (572)
.+|.++...|++++|.++++......|+
T Consensus 208 ~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 208 RLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 8999999999999999998887766553
No 49
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.20 E-value=9.1e-10 Score=117.05 Aligned_cols=168 Identities=20% Similarity=0.182 Sum_probs=76.6
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN----INALILMGQTQLQKGLLEEAVEYLECAISKLF 434 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~----~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~ 434 (572)
..++..+|.+++.+..+|..+...|++++|+..++++++..+.. ..++..+|.+|...|++++|+.+|+++++.
T Consensus 59 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-- 136 (389)
T PRK11788 59 IEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-- 136 (389)
T ss_pred HHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--
Confidence 33444444444455555555555555555555555554432211 134445555555555555555555555431
Q ss_pred hcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhH-----HHHHhhh------------hhHhhhhhhccHHHHHHHHHHH
Q 008246 435 LAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFF-----ELVQQGQ------------LKLLSFVSQEKWEEGIAHLERI 497 (572)
Q Consensus 435 ~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~-----~a~~~~~------------~~~~~~~~~g~~~eAi~~l~ka 497 (572)
+|.+ ..++..++.++...|+.+.. +...... ..+..+...|++++|++.|+++
T Consensus 137 ---~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 137 ---GDFA-------EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred ---Ccch-------HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1111 12334444444444422210 0000000 0112234455555555555555
Q ss_pred hcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 498 GNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 498 l~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
++ .+|.+. .++..+|.++.+.|++++|.++++++++.+|++
T Consensus 207 l~----~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 207 LA----ADPQCV----RASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred Hh----HCcCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 55 344322 334456666666666666666666666665554
No 50
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.20 E-value=5.2e-10 Score=129.93 Aligned_cols=158 Identities=22% Similarity=0.217 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~ 447 (572)
+++.++..|..+..+|++++|+..++++++.+|+++++++.+|.++...|++++|+..|+++++. .|.+.
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~----- 90 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSL-----GYPKN----- 90 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCChh-----
Confidence 45678899999999999999999999999999999999999999999999999999999999873 33321
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHH---------------hhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhh
Q 008246 448 LIVASQWSGVACIRQAAHNFFELVQ---------------QGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHY 512 (572)
Q Consensus 448 ~~~a~~~lG~~~~~~g~~~~~~a~~---------------~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~ 512 (572)
..+..+|.++...|+.+ +++. .....+.++...|++++|++.|+++++ .+|.+.
T Consensus 91 --~~~~~~a~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~~--- 159 (899)
T TIGR02917 91 --QVLPLLARAYLLQGKFQ--QVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALA----IDPRSL--- 159 (899)
T ss_pred --hhHHHHHHHHHHCCCHH--HHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCCh---
Confidence 22344555566555322 1111 111123345555666666666666665 233221
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008246 513 YDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 513 ~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~ 547 (572)
.++..+|.++...|++++|.+.++++++.+|++.
T Consensus 160 -~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 193 (899)
T TIGR02917 160 -YAKLGLAQLALAENRFDEARALIDEVLTADPGNV 193 (899)
T ss_pred -hhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh
Confidence 2333445555555555555555555555554443
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.18 E-value=5.9e-11 Score=120.96 Aligned_cols=134 Identities=25% Similarity=0.307 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008246 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (572)
Q Consensus 367 ~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~ 446 (572)
.++..++..|..+.+.|+.++|+++|++|++.+|+|.+++..++.++...|+.+++.+.+++.... .|+++
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-----~~~~~---- 214 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA-----APDDP---- 214 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSC----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-----CcCHH----
Confidence 467889999999999999999999999999999999999999999999999999988888877763 23333
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHc
Q 008246 447 LLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 526 (572)
Q Consensus 447 ~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~ 526 (572)
..+..+|.++..+| ++++|+.+|+++++ ..|.|| ..+..+|.++...
T Consensus 215 ---~~~~~la~~~~~lg----------------------~~~~Al~~~~~~~~-~~p~d~-------~~~~~~a~~l~~~ 261 (280)
T PF13429_consen 215 ---DLWDALAAAYLQLG----------------------RYEEALEYLEKALK-LNPDDP-------LWLLAYADALEQA 261 (280)
T ss_dssp ---CHCHHHHHHHHHHT-----------------------HHHHHHHHHHHHH-HSTT-H-------HHHHHHHHHHT--
T ss_pred ---HHHHHHHHHhcccc----------------------cccccccccccccc-cccccc-------ccccccccccccc
Confidence 12455789999999 99999999999999 234443 4567899999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 008246 527 GRNAEAEKYLRLAAAH 542 (572)
Q Consensus 527 g~~eeA~~~l~~aL~l 542 (572)
|+.++|.++++++++.
T Consensus 262 g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 262 GRKDEALRLRRQALRL 277 (280)
T ss_dssp ----------------
T ss_pred cccccccccccccccc
Confidence 9999999999998763
No 52
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.16 E-value=3.3e-10 Score=101.95 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=100.0
Q ss_pred hhhhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q 008246 357 AKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436 (572)
Q Consensus 357 ~~~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~ 436 (572)
...+++..+|.+....+.+|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+.+|++++..
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 80 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL---- 80 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 3457888889899999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcC
Q 008246 437 GHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNL 500 (572)
Q Consensus 437 ~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l 500 (572)
+|+++ ..++.+|.++...| ++++|+..|++++++
T Consensus 81 -~p~~~-------~~~~~la~~~~~~g----------------------~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 81 -DPDDP-------RPYFHAAECLLALG----------------------EPESALKALDLAIEI 114 (135)
T ss_pred -CCCCh-------HHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHh
Confidence 55543 35688899999999 999999999999993
No 53
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.14 E-value=2e-09 Score=125.14 Aligned_cols=167 Identities=20% Similarity=0.275 Sum_probs=97.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008246 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (572)
Q Consensus 361 ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~ 440 (572)
+++.+|.+++.++.+|..+...|++++|+..++++++.+|++..+++.+|.++...|++++|.++|+++++. +|.
T Consensus 151 a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-----~p~ 225 (899)
T TIGR02917 151 ALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIAL-----RPN 225 (899)
T ss_pred HHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCC
Confidence 444445555666777777777777777777777777777777777777777777777777777777777653 444
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhchhhHH-----HHHhh-------hhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCch
Q 008246 441 EPEAIDLLIVASQWSGVACIRQAAHNFFE-----LVQQG-------QLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKS 508 (572)
Q Consensus 441 ~~~~~~~~~~a~~~lG~~~~~~g~~~~~~-----a~~~~-------~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~ 508 (572)
+. ..+..++.++...|+.+... +.+.. ...+.++...|++++|+..|+++++ .+|..
T Consensus 226 ~~-------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~----~~~~~ 294 (899)
T TIGR02917 226 NP-------AVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALK----SAPEY 294 (899)
T ss_pred CH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCc
Confidence 32 23445566666655322110 11100 0112334456667777777777666 23322
Q ss_pred hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008246 509 KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 509 ~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~ 547 (572)
..++..+|.++...|++++|..+++++++.+|++.
T Consensus 295 ----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 329 (899)
T TIGR02917 295 ----LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSH 329 (899)
T ss_pred ----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 13344566666666666666666666666666554
No 54
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=3.2e-10 Score=120.49 Aligned_cols=171 Identities=18% Similarity=0.205 Sum_probs=105.4
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
+.+|.-+|.+.+++..+|..+.+.++-..|+..+++++++||+|-+++..||..|...|.-.+|++++++=+.. .
T Consensus 309 EAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~-----~ 383 (579)
T KOG1125|consen 309 EAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRN-----K 383 (579)
T ss_pred HHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-----C
Confidence 45777788888888888888888777777888888888888888888888888888888888888887776542 1
Q ss_pred CC-----------Chh----hhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhh---------hHhhhhhhccHHHHHHHH
Q 008246 439 PT-----------EPE----AIDLLIVASQWSGVACIRQAAHNFFELVQQGQL---------KLLSFVSQEKWEEGIAHL 494 (572)
Q Consensus 439 P~-----------~~~----~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~---------~~~~~~~~g~~~eAi~~l 494 (572)
|. ..+ ..+.. .+...-.. |.++...... +.-.|...|+|++|+++|
T Consensus 384 p~y~~l~~a~~~~~~~~~~s~~~~~--~l~~i~~~--------fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 384 PKYVHLVSAGENEDFENTKSFLDSS--HLAHIQEL--------FLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred ccchhccccCccccccCCcCCCCHH--HHHHHHHH--------HHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 10 000 00000 00000000 1111111110 111244456788888888
Q ss_pred HHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 008246 495 ERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 552 (572)
Q Consensus 495 ~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~ 552 (572)
+.|+. .+|.+. ..|..||..+..-.+.+||+..|++|+++.|+|...+.+
T Consensus 454 ~~AL~----v~Pnd~----~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN 503 (579)
T KOG1125|consen 454 EAALQ----VKPNDY----LLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN 503 (579)
T ss_pred HHHHh----cCCchH----HHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh
Confidence 88877 455442 345567777777777777777777777777776544433
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=6.3e-10 Score=115.94 Aligned_cols=173 Identities=17% Similarity=0.149 Sum_probs=136.0
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
..+..+||.+++.|+..|...+-.+++++|+.-|++++++||+++-++..++.+.+++++++++...|+.+... .
T Consensus 384 ~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-----F 458 (606)
T KOG0547|consen 384 NKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-----F 458 (606)
T ss_pred HHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----C
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999986 7
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchh-----hHHHHHhhhh------hH--------hhhhhhccHHHHHHHHHHHhc
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHN-----FFELVQQGQL------KL--------LSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~-----~~~a~~~~~~------~~--------~~~~~~g~~~eAi~~l~kal~ 499 (572)
|+.++ .+...|.++..++..+ +..++++.+. .+ ..+.=.+++.+|+..+++|++
T Consensus 459 P~~~E-------vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 459 PNCPE-------VYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE 531 (606)
T ss_pred CCCch-------HHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc
Confidence 77763 3444677777777333 1223332221 00 011224789999999999999
Q ss_pred CCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008246 500 LKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 551 (572)
Q Consensus 500 l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~ 551 (572)
.||... .++..||.+..++|+.+||+++|++++.+.-...+.+.
T Consensus 532 ----~Dpkce----~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~ 575 (606)
T KOG0547|consen 532 ----LDPKCE----QAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMVH 575 (606)
T ss_pred ----cCchHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 677765 35566999999999999999999999888766555433
No 56
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=5.1e-10 Score=110.99 Aligned_cols=103 Identities=20% Similarity=0.208 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
++.+-..|..+...++|.+|+..|.+||+++|+|+.-|-+.+.+|.+.|+++.|++-++.|+.+ + +..
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-----D-------p~y 148 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-----D-------PHY 148 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-----C-------hHH
Confidence 5667777888888888888888888888888888888888888888888888888888888874 2 233
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchh
Q 008246 449 IVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSK 509 (572)
Q Consensus 449 ~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~ 509 (572)
..+|..+|.+|..+| ++++|++.|+++++ .||.+.
T Consensus 149 skay~RLG~A~~~~g----------------------k~~~A~~aykKaLe----ldP~Ne 183 (304)
T KOG0553|consen 149 SKAYGRLGLAYLALG----------------------KYEEAIEAYKKALE----LDPDNE 183 (304)
T ss_pred HHHHHHHHHHHHccC----------------------cHHHHHHHHHhhhc----cCCCcH
Confidence 467777788777777 88888888888888 466554
No 57
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=3.9e-10 Score=119.86 Aligned_cols=176 Identities=19% Similarity=0.241 Sum_probs=140.7
Q ss_pred HHHHHcCHH---HHhhhCCCCCCCCCCCCCCccccccccccCCchhhhccccCCCCHHHHHHHHHHHHhcCCcccHHHHH
Q 008246 316 QQLALKHPA---SRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFLSKGDKERPIPLL 392 (572)
Q Consensus 316 Q~~~lr~~~---~r~~lgip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l 392 (572)
...+.+.|. .=++||+-...+-....+ |+. =.+.++.||.+-+++..+|..|...|.-.+|..++
T Consensus 309 EAAVkqdP~haeAW~~LG~~qaENE~E~~a---i~A---------L~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 309 EAAVKQDPQHAEAWQKLGITQAENENEQNA---ISA---------LRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred HHHHhhChHHHHHHHHhhhHhhhccchHHH---HHH---------HHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 445666673 345678766655332222 221 14688999999999999999998888777777776
Q ss_pred HHHHh-----------------------------------------hCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008246 393 QLALN-----------------------------------------KEP--DNINALILMGQTQLQKGLLEEAVEYLECA 429 (572)
Q Consensus 393 ~~AL~-----------------------------------------~dP--~~~~a~~~LG~l~~~~g~~~eA~~~~~rA 429 (572)
++=|+ .+| .|++++..||.+|...|+|++|++||+.|
T Consensus 377 ~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~A 456 (579)
T KOG1125|consen 377 DKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAA 456 (579)
T ss_pred HHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHH
Confidence 66544 346 68899999999999999999999999999
Q ss_pred HHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchh
Q 008246 430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSK 509 (572)
Q Consensus 430 l~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~ 509 (572)
++. +|++. ..|..+|-.+.... +.+||+..|++|++| .|.
T Consensus 457 L~v-----~Pnd~-------~lWNRLGAtLAN~~----------------------~s~EAIsAY~rALqL----qP~-- 496 (579)
T KOG1125|consen 457 LQV-----KPNDY-------LLWNRLGATLANGN----------------------RSEEAISAYNRALQL----QPG-- 496 (579)
T ss_pred Hhc-----CCchH-------HHHHHhhHHhcCCc----------------------ccHHHHHHHHHHHhc----CCC--
Confidence 985 67663 45888999988888 999999999999994 564
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008246 510 AHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 510 ~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~ 545 (572)
|..++++||..++.+|.|+||.++|-.||.+.+.
T Consensus 497 --yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 497 --YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred --eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 5678889999999999999999999999999876
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=7.6e-10 Score=117.23 Aligned_cols=151 Identities=17% Similarity=0.137 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~ 449 (572)
.-.+.+|..+.+.+++.-|.++|.+|+.+.|+|+-.+..+|.+.+..+.+.+|..+|+.++..+- ...+. . ....
T Consensus 381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik-~~~~e---~-~~w~ 455 (611)
T KOG1173|consen 381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIK-SVLNE---K-IFWE 455 (611)
T ss_pred chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhh-hcccc---c-cchh
Confidence 34577899999999999999999999999999999999999999999999999999999995320 00111 1 1222
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCH
Q 008246 450 VASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRN 529 (572)
Q Consensus 450 ~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~ 529 (572)
..+.++|.++.+++ ++++|+..|++++.+ .|.+. .++..+|.+|..+|++
T Consensus 456 p~~~NLGH~~Rkl~----------------------~~~eAI~~~q~aL~l----~~k~~----~~~asig~iy~llgnl 505 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLN----------------------KYEEAIDYYQKALLL----SPKDA----STHASIGYIYHLLGNL 505 (611)
T ss_pred HHHHhHHHHHHHHh----------------------hHHHHHHHHHHHHHc----CCCch----hHHHHHHHHHHHhcCh
Confidence 34788999999999 999999999999994 44443 4566799999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 530 AEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 530 eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
+.|+++|.++|.++|++.-.-+.+..
T Consensus 506 d~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 506 DKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 99999999999999998654443333
No 59
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.10 E-value=2.3e-09 Score=104.59 Aligned_cols=136 Identities=19% Similarity=0.137 Sum_probs=116.7
Q ss_pred cccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008246 362 ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (572)
Q Consensus 362 i~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~ 441 (572)
...++.+.+.+..+|..+.+.|++.+|+..++++.+.+|+|+++|..+|.+|.+.|++++|...|.+|+++ .|++
T Consensus 93 ~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L-----~~~~ 167 (257)
T COG5010 93 AIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL-----APNE 167 (257)
T ss_pred hccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh-----ccCC
Confidence 44556677888889999999999999999999999999999999999999999999999999999999996 5665
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHH
Q 008246 442 PEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAS 521 (572)
Q Consensus 442 ~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~ 521 (572)
+ ....++|..+.-.| ++++|...+.++.. ..+.|. .+..+|+.
T Consensus 168 p-------~~~nNlgms~~L~g----------------------d~~~A~~lll~a~l-~~~ad~-------~v~~NLAl 210 (257)
T COG5010 168 P-------SIANNLGMSLLLRG----------------------DLEDAETLLLPAYL-SPAADS-------RVRQNLAL 210 (257)
T ss_pred c-------hhhhhHHHHHHHcC----------------------CHHHHHHHHHHHHh-CCCCch-------HHHHHHHH
Confidence 4 34678999999999 99999999999987 222222 35567999
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 008246 522 ALCNVGRNAEAEKYLRLA 539 (572)
Q Consensus 522 ~l~~~g~~eeA~~~l~~a 539 (572)
+....|++++|++.-.+-
T Consensus 211 ~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 211 VVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHhhcCChHHHHhhcccc
Confidence 999999999999876553
No 60
>PLN02789 farnesyltranstransferase
Probab=99.07 E-value=3.4e-09 Score=109.74 Aligned_cols=151 Identities=13% Similarity=0.097 Sum_probs=121.5
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhhcCC
Q 008246 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG-LLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g-~~~eA~~~~~rAl~~l~~~~~ 438 (572)
.+|.-.+...++.-.+-..+...++.++|+..+.++|+++|++..+|...|.++...| ++++|++++++++.. +
T Consensus 28 ~~i~y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-----n 102 (320)
T PLN02789 28 VPIAYTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-----N 102 (320)
T ss_pred cceeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH-----C
Confidence 3444333333333233333566789999999999999999999999999999999999 689999999999985 6
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhcc--HHHHHHHHHHHhcCCCCCCCchhhhhhHHH
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEK--WEEGIAHLERIGNLKEPEEPKSKAHYYDGL 516 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~--~~eAi~~l~kal~l~~p~dp~~~~~~~~al 516 (572)
|++. .+|++.|.++.+.| + ++++++.++++++ .||++ +.+|
T Consensus 103 pkny-------qaW~~R~~~l~~l~----------------------~~~~~~el~~~~kal~----~dpkN----y~AW 145 (320)
T PLN02789 103 PKNY-------QIWHHRRWLAEKLG----------------------PDAANKELEFTRKILS----LDAKN----YHAW 145 (320)
T ss_pred Ccch-------HHhHHHHHHHHHcC----------------------chhhHHHHHHHHHHHH----hCccc----HHHH
Confidence 6553 46888888888887 5 3778999999999 67765 3678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 008246 517 VVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 552 (572)
Q Consensus 517 ~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~ 552 (572)
...|.++...|++++|+++++++++.||++..++.+
T Consensus 146 ~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~ 181 (320)
T PLN02789 146 SHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQ 181 (320)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHH
Confidence 889999999999999999999999999998775543
No 61
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.07 E-value=5.2e-09 Score=102.12 Aligned_cols=151 Identities=22% Similarity=0.214 Sum_probs=129.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008246 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (572)
Q Consensus 361 ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~ 440 (572)
.....|.+.+. ..++..+...|+-+++.....+++..+|.+.+.+..+|....+.|++.+|+..+++|.++ +|+
T Consensus 59 ~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-----~p~ 132 (257)
T COG5010 59 AVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-----APT 132 (257)
T ss_pred HHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----CCC
Confidence 44455666677 888999999999999999999999999999999999999999999999999999999985 777
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHH
Q 008246 441 EPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA 520 (572)
Q Consensus 441 ~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg 520 (572)
|. ++|..+|.+|.+.| ++++|...|.+++++. |.+| .+..++|
T Consensus 133 d~-------~~~~~lgaaldq~G----------------------r~~~Ar~ay~qAl~L~-~~~p-------~~~nNlg 175 (257)
T COG5010 133 DW-------EAWNLLGAALDQLG----------------------RFDEARRAYRQALELA-PNEP-------SIANNLG 175 (257)
T ss_pred Ch-------hhhhHHHHHHHHcc----------------------ChhHHHHHHHHHHHhc-cCCc-------hhhhhHH
Confidence 64 46778999999999 9999999999999953 3444 4567899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhcc
Q 008246 521 SALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 554 (572)
Q Consensus 521 ~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~ 554 (572)
..|.-.|+++.|+.++.++...-+.+....+++.
T Consensus 176 ms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLA 209 (257)
T COG5010 176 MSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLA 209 (257)
T ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 9999999999999999999887776665555443
No 62
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.06 E-value=3.2e-09 Score=116.77 Aligned_cols=151 Identities=19% Similarity=0.146 Sum_probs=116.1
Q ss_pred ccCCCCHHHHHHHHHHHHhcCC---cccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHH
Q 008246 363 SVENLTPKELIALSVKFLSKGD---KERPIPLLQLALNKEPDNINALILMGQTQLQKG--------LLEEAVEYLECAIS 431 (572)
Q Consensus 363 ~~~~~~~~~~~~lA~~~~~~g~---~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g--------~~~eA~~~~~rAl~ 431 (572)
.+.+.++..++..|..+...++ +++|+.+|++|+++||+++.+|-.++.+|.... +.+++.+..++++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4455567788999999887665 778999999999999999999999999886543 23455556666554
Q ss_pred hhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhh
Q 008246 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAH 511 (572)
Q Consensus 432 ~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~ 511 (572)
+ ..+|.+ ..+|..+|..+...| ++++|...+++|+++ +|.
T Consensus 413 l---~~~~~~-------~~~~~ala~~~~~~g----------------------~~~~A~~~l~rAl~L----~ps---- 452 (517)
T PRK10153 413 L---PELNVL-------PRIYEILAVQALVKG----------------------KTDEAYQAINKAIDL----EMS---- 452 (517)
T ss_pred c---ccCcCC-------hHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHc----CCC----
Confidence 2 112222 145666777777778 999999999999994 452
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 512 YYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 512 ~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
..++..+|.++...|++++|.+.|++|++++|.+.. +..|++
T Consensus 453 -~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt-~~~~~~ 494 (517)
T PRK10153 453 -WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT-LYWIEN 494 (517)
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-HHHHHh
Confidence 257788999999999999999999999999999864 445554
No 63
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.04 E-value=2.9e-09 Score=123.39 Aligned_cols=142 Identities=18% Similarity=0.096 Sum_probs=118.3
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008246 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P 439 (572)
...+.++..+..+..+|..+...|++++|++.|+++++.+|+++.++..+|.++...|++++|+.+++++++. +|
T Consensus 40 ~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-----~P 114 (765)
T PRK10049 40 RYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-----AP 114 (765)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CC
Confidence 3445678888889999999999999999999999999999999999999999999999999999999999975 66
Q ss_pred CChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHH
Q 008246 440 TEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL 519 (572)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~L 519 (572)
++. . +..+|.++...| ++++|+..++++++ .+|++. .++..+
T Consensus 115 ~~~-------~-~~~la~~l~~~g----------------------~~~~Al~~l~~al~----~~P~~~----~~~~~l 156 (765)
T PRK10049 115 DKA-------N-LLALAYVYKRAG----------------------RHWDELRAMTQALP----RAPQTQ----QYPTEY 156 (765)
T ss_pred CCH-------H-HHHHHHHHHHCC----------------------CHHHHHHHHHHHHH----hCCCCH----HHHHHH
Confidence 654 2 456788888888 99999999999999 455543 455668
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008246 520 ASALCNVGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 520 g~~l~~~g~~eeA~~~l~~aL~l~P~ 545 (572)
|.++...|+.++|++.++++.+ +|+
T Consensus 157 a~~l~~~~~~e~Al~~l~~~~~-~p~ 181 (765)
T PRK10049 157 VQALRNNRLSAPALGAIDDANL-TPA 181 (765)
T ss_pred HHHHHHCCChHHHHHHHHhCCC-CHH
Confidence 9999999999999999987665 554
No 64
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.04 E-value=1.4e-09 Score=110.91 Aligned_cols=150 Identities=23% Similarity=0.280 Sum_probs=106.7
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKE--PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~d--P~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~ 445 (572)
++..+......+...|+++++...++++.+.. ++++..|..+|.++.+.|+.++|+++|++|+++ +|+++
T Consensus 109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~--- 180 (280)
T PF13429_consen 109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL-----DPDDP--- 180 (280)
T ss_dssp ---------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------TT-H---
T ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCH---
Confidence 45556667777889999999999999987765 789999999999999999999999999999986 77664
Q ss_pred hHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHH
Q 008246 446 DLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN 525 (572)
Q Consensus 446 ~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~ 525 (572)
.+...++..+...| +++++.+.+++..+. .|.+|. .+..+|.++..
T Consensus 181 ----~~~~~l~~~li~~~----------------------~~~~~~~~l~~~~~~-~~~~~~-------~~~~la~~~~~ 226 (280)
T PF13429_consen 181 ----DARNALAWLLIDMG----------------------DYDEAREALKRLLKA-APDDPD-------LWDALAAAYLQ 226 (280)
T ss_dssp ----HHHHHHHHHHCTTC----------------------HHHHHHHHHHHHHHH--HTSCC-------HCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHCC----------------------ChHHHHHHHHHHHHH-CcCHHH-------HHHHHHHHhcc
Confidence 23455677777777 999888888777762 234442 33468999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHhccccchH
Q 008246 526 VGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEE 559 (572)
Q Consensus 526 ~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~~~~~ 559 (572)
+|++++|..+|+++++.+|++...+..+......
T Consensus 227 lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 227 LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ 260 (280)
T ss_dssp HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999988766665554333
No 65
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=2.2e-09 Score=106.62 Aligned_cols=80 Identities=20% Similarity=0.208 Sum_probs=76.3
Q ss_pred hhhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008246 358 KQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAG 437 (572)
Q Consensus 358 ~~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~ 437 (572)
|..||..+|.++-.|++.|..|.+.|+++.|++.++.||++||.+..+|..||.+|..+|++++|++.|++|+++
T Consensus 104 Y~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLel----- 178 (304)
T KOG0553|consen 104 YTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL----- 178 (304)
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc-----
Confidence 488999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCh
Q 008246 438 HPTEP 442 (572)
Q Consensus 438 ~P~~~ 442 (572)
+|++.
T Consensus 179 dP~Ne 183 (304)
T KOG0553|consen 179 DPDNE 183 (304)
T ss_pred CCCcH
Confidence 66653
No 66
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.04 E-value=5.3e-09 Score=95.74 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=100.1
Q ss_pred HHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHH
Q 008246 393 QLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELV 471 (572)
Q Consensus 393 ~~AL~~d-P~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~ 471 (572)
.-...++ ++.-+..|.+|..+...|++++|+..|+-.... +|.+ ...|+++|.++..+|
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~-----Dp~~-------~~y~~gLG~~~Q~~g-------- 83 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY-----DAWS-------FDYWFRLGECCQAQK-------- 83 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----Cccc-------HHHHHHHHHHHHHHh--------
Confidence 4455678 889999999999999999999999999888864 5544 356899999999999
Q ss_pred HhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH
Q 008246 472 QQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN---PQYNE 548 (572)
Q Consensus 472 ~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~---P~~~~ 548 (572)
++++|++.|.+++.+. |+|| .++.++|.|+...|+.++|++.|+.++..- |.+..
T Consensus 84 --------------~~~~AI~aY~~A~~L~-~ddp-------~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~ 141 (157)
T PRK15363 84 --------------HWGEAIYAYGRAAQIK-IDAP-------QAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQI 141 (157)
T ss_pred --------------hHHHHHHHHHHHHhcC-CCCc-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHH
Confidence 9999999999999953 4555 456679999999999999999999999876 55555
Q ss_pred HHHhccc
Q 008246 549 LLEQLEN 555 (572)
Q Consensus 549 ~l~~l~~ 555 (572)
+.++.+.
T Consensus 142 l~~~A~~ 148 (157)
T PRK15363 142 LRQRAEK 148 (157)
T ss_pred HHHHHHH
Confidence 5444444
No 67
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.03 E-value=9e-09 Score=107.99 Aligned_cols=148 Identities=25% Similarity=0.269 Sum_probs=123.9
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008246 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~ 445 (572)
+.-....|..|..++..|++++|+..++..++..|+|+..+-..|.++.+.|+.++|.+.+++++.+ +|+.+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-----~P~~~--- 374 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-----DPNSP--- 374 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCcc---
Confidence 4667889999999999999999999999999999999999999999999999999999999999985 55542
Q ss_pred hHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHH
Q 008246 446 DLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN 525 (572)
Q Consensus 446 ~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~ 525 (572)
....++|.++.+.| ++.+|+..+++.+. .+|+|| +.|..||.+|..
T Consensus 375 ----~l~~~~a~all~~g----------------------~~~eai~~L~~~~~-~~p~dp-------~~w~~LAqay~~ 420 (484)
T COG4783 375 ----LLQLNLAQALLKGG----------------------KPQEAIRILNRYLF-NDPEDP-------NGWDLLAQAYAE 420 (484)
T ss_pred ----HHHHHHHHHHHhcC----------------------ChHHHHHHHHHHhh-cCCCCc-------hHHHHHHHHHHH
Confidence 34677899999999 99999999999998 455555 455668888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 526 VGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 526 ~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
+|+..+|...+.+...++-+...+...+..
T Consensus 421 ~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 421 LGNRAEALLARAEGYALAGRLEQAIIFLMR 450 (484)
T ss_pred hCchHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 888888887777777777766655554444
No 68
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.03 E-value=8.3e-09 Score=119.66 Aligned_cols=145 Identities=12% Similarity=0.107 Sum_probs=127.5
Q ss_pred cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008246 364 VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (572)
Q Consensus 364 ~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~ 443 (572)
..++++........++.-.|+.++|++.++++...+|..+.++..+|.++...|++++|+++|++++++ +|.++
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-----~P~~~- 83 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-----EPQND- 83 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-
Confidence 456778888888899999999999999999999999999999999999999999999999999999985 66654
Q ss_pred hhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHH
Q 008246 444 AIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL 523 (572)
Q Consensus 444 ~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l 523 (572)
.++..+|.++...| ++++|+..++++++ .+|++. . +..+|.++
T Consensus 84 ------~a~~~la~~l~~~g----------------------~~~eA~~~l~~~l~----~~P~~~----~-~~~la~~l 126 (765)
T PRK10049 84 ------DYQRGLILTLADAG----------------------QYDEALVKAKQLVS----GAPDKA----N-LLALAYVY 126 (765)
T ss_pred ------HHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHH----hCCCCH----H-HHHHHHHH
Confidence 24567888888888 99999999999999 456544 3 56689999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008246 524 CNVGRNAEAEKYLRLAAAHNPQYNELLE 551 (572)
Q Consensus 524 ~~~g~~eeA~~~l~~aL~l~P~~~~~l~ 551 (572)
...|++++|+..|+++++.+|++.+++.
T Consensus 127 ~~~g~~~~Al~~l~~al~~~P~~~~~~~ 154 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPRAPQTQQYPT 154 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999999999876544
No 69
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.02 E-value=3.8e-09 Score=111.43 Aligned_cols=114 Identities=19% Similarity=0.231 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~ 450 (572)
.+...|..++..|++++|+.+|++|++++|+++.+|+.+|.+|...|++++|+..+++|+++ +|.++ .
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-----~P~~~-------~ 71 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL-----DPSLA-------K 71 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCCH-------H
Confidence 46788999999999999999999999999999999999999999999999999999999986 66553 4
Q ss_pred HHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHc
Q 008246 451 ASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 526 (572)
Q Consensus 451 a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~ 526 (572)
+++.+|.++..+| ++++|+..|+++++ .+|++. .+...++.+...+
T Consensus 72 a~~~lg~~~~~lg----------------------~~~eA~~~~~~al~----l~P~~~----~~~~~l~~~~~kl 117 (356)
T PLN03088 72 AYLRKGTACMKLE----------------------EYQTAKAALEKGAS----LAPGDS----RFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHhC----------------------CHHHHHHHHHHHHH----hCCCCH----HHHHHHHHHHHHH
Confidence 6788999999999 99999999999999 455443 2333455554433
No 70
>PLN02789 farnesyltranstransferase
Probab=99.02 E-value=5.8e-09 Score=108.03 Aligned_cols=152 Identities=12% Similarity=0.034 Sum_probs=128.7
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcC-CcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhhhh
Q 008246 359 QLKISVENLTPKELIALSVKFLSKG-DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLL--EEAVEYLECAISKLFL 435 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g-~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~--~eA~~~~~rAl~~l~~ 435 (572)
..+|..+|.+..++...+..+...| ++++|+..++++++.+|++..+|+..|.++...|+. ++++++++++++.
T Consensus 61 ~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--- 137 (320)
T PLN02789 61 ADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--- 137 (320)
T ss_pred HHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh---
Confidence 3678888889999999999999888 679999999999999999999999999999999874 7889999999985
Q ss_pred cCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHH
Q 008246 436 AGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG 515 (572)
Q Consensus 436 ~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~a 515 (572)
+|++ ..+|.+.|.++...| ++++|++.++++++ .||.+. .+
T Consensus 138 --dpkN-------y~AW~~R~w~l~~l~----------------------~~~eeL~~~~~~I~----~d~~N~----sA 178 (320)
T PLN02789 138 --DAKN-------YHAWSHRQWVLRTLG----------------------GWEDELEYCHQLLE----EDVRNN----SA 178 (320)
T ss_pred --Cccc-------HHHHHHHHHHHHHhh----------------------hHHHHHHHHHHHHH----HCCCch----hH
Confidence 5554 257899999999999 99999999999999 566654 45
Q ss_pred HHHHHHHHHHc---CCH----HHHHHHHHHHHHhCCCCHHHHHh
Q 008246 516 LVVLASALCNV---GRN----AEAEKYLRLAAAHNPQYNELLEQ 552 (572)
Q Consensus 516 l~~Lg~~l~~~---g~~----eeA~~~l~~aL~l~P~~~~~l~~ 552 (572)
+...+.++... |++ ++++++.++++..+|++...+..
T Consensus 179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Y 222 (320)
T PLN02789 179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRY 222 (320)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHH
Confidence 66688887766 333 57889999999999998766543
No 71
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.1e-09 Score=112.26 Aligned_cols=168 Identities=17% Similarity=0.204 Sum_probs=137.3
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHH------------HHHHHHHHHHHcCCHHHHHHHHHH
Q 008246 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN------------ALILMGQTQLQKGLLEEAVEYLEC 428 (572)
Q Consensus 361 ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~------------a~~~LG~l~~~~g~~~eA~~~~~r 428 (572)
-+..++.+.++++..|.++.-.++.+.|+..|+++|.+||++.. .|-.-|+-.++.|++.+|.++|..
T Consensus 195 ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yte 274 (486)
T KOG0550|consen 195 ILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTE 274 (486)
T ss_pred HHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHH
Confidence 45677778899999999999999999999999999999999864 455678889999999999999999
Q ss_pred HHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCch
Q 008246 429 AISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKS 508 (572)
Q Consensus 429 Al~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~ 508 (572)
|+.+ +|++. ..+...|.+++.+..++| +..||+...+.+++ .|+
T Consensus 275 al~i-----dP~n~---~~naklY~nra~v~~rLg----------------------rl~eaisdc~~Al~----iD~-- 318 (486)
T KOG0550|consen 275 ALNI-----DPSNK---KTNAKLYGNRALVNIRLG----------------------RLREAISDCNEALK----IDS-- 318 (486)
T ss_pred hhcC-----Ccccc---chhHHHHHHhHhhhcccC----------------------Cchhhhhhhhhhhh----cCH--
Confidence 9986 77765 223345788888888888 99999999999999 455
Q ss_pred hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccccchHHhhhhhhhhccC
Q 008246 509 KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEEFVSDLSSSRRRD 571 (572)
Q Consensus 509 ~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~~~~~~~~~~~~~~~~~ 571 (572)
.|..+++..|.|+..++++++|.+.|+++++..-+ .+..+.+.+.... |.++.|+|
T Consensus 319 --syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~a----LkkSkRkd 374 (486)
T KOG0550|consen 319 --SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLA----LKKSKRKD 374 (486)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHH----HHHhhhhh
Confidence 37789999999999999999999999999998876 4444444442222 55555555
No 72
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=5.4e-09 Score=110.89 Aligned_cols=175 Identities=14% Similarity=0.116 Sum_probs=133.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008246 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (572)
Q Consensus 361 ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~ 440 (572)
-++.+|..+-.++..|.-|+.-|++++|.++|-+|-.+||....+|..+|..+...|+.|+|..+|.+|.++ -|.
T Consensus 304 LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-----~~G 378 (611)
T KOG1173|consen 304 LVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-----MPG 378 (611)
T ss_pred HHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-----ccC
Confidence 445666677789999999999999999999999999999999999999999999999999999999999985 232
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhchhh-----HHHHHhhhh-------hHhhhhhhccHHHHHHHHHHHhcCCCCCCCch
Q 008246 441 EPEAIDLLIVASQWSGVACIRQAAHNF-----FELVQQGQL-------KLLSFVSQEKWEEGIAHLERIGNLKEPEEPKS 508 (572)
Q Consensus 441 ~~~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~~~~-------~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~ 508 (572)
.- . ....+|.-|.+.+..+. .+|....+. .+-+....+.|.+|..+|++++.-....++..
T Consensus 379 ~h-l------P~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~ 451 (611)
T KOG1173|consen 379 CH-L------PSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK 451 (611)
T ss_pred Cc-c------hHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc
Confidence 21 1 23557887777774442 223322221 11234457799999999999984211122222
Q ss_pred hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 509 KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 509 ~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
. .|...+.+||.++.+++++++|+.+|+++|.+.|.+..
T Consensus 452 ~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~ 490 (611)
T KOG1173|consen 452 I-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS 490 (611)
T ss_pred c-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh
Confidence 2 35566789999999999999999999999999998764
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=6.4e-10 Score=110.73 Aligned_cols=169 Identities=15% Similarity=0.133 Sum_probs=112.5
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008246 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P 439 (572)
..++.-|.+...++..|.++...++.++|.++|+++++.+|.|.++.-..|.-|+..|+.+-|+.+|+|.+++ --
T Consensus 281 ~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-----G~ 355 (478)
T KOG1129|consen 281 EGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-----GA 355 (478)
T ss_pred hhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHh-----cC
Confidence 3456667777788899999999999999999999999999999999999999999999999999999999985 11
Q ss_pred CChhhhhHHHHHHHHHHHHHHHhhchhh-----HHHHH---hhhhhHhhh-------hhhccHHHHHHHHHHHhcCCCCC
Q 008246 440 TEPEAIDLLIVASQWSGVACIRQAAHNF-----FELVQ---QGQLKLLSF-------VSQEKWEEGIAHLERIGNLKEPE 504 (572)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~---~~~~~~~~~-------~~~g~~~eAi~~l~kal~l~~p~ 504 (572)
.++ ..+.++|.|+...+..++ .++.. .....+++| +..|++.-|..+|+-++. .
T Consensus 356 ~sp-------eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~----~ 424 (478)
T KOG1129|consen 356 QSP-------ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT----S 424 (478)
T ss_pred CCh-------HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc----c
Confidence 111 246788999988884442 11111 011122232 224555555555555555 4
Q ss_pred CCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 505 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 505 dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
|+++. +++.+||..-.+.|+.++|+.+|..|-...|+..+
T Consensus 425 d~~h~----ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 425 DAQHG----EALNNLAVLAARSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred CcchH----HHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccc
Confidence 44332 34445555555555555555555555555555443
No 74
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=8.4e-09 Score=103.01 Aligned_cols=131 Identities=21% Similarity=0.166 Sum_probs=104.6
Q ss_pred ccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhch
Q 008246 386 ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAH 465 (572)
Q Consensus 386 ~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~ 465 (572)
++-+.-++.-|+.||+|++.|..||.+|...|+++.|...|++|+++ .|+++ ..+..+|.++..+.
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-----~g~n~-------~~~~g~aeaL~~~a-- 204 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-----AGDNP-------EILLGLAEALYYQA-- 204 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-----CCCCH-------HHHHHHHHHHHHhc--
Confidence 34456678889999999999999999999999999999999999996 66654 23455666666555
Q ss_pred hhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008246 466 NFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 466 ~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~ 545 (572)
.+....++.+.++++++ .||.+. .++.+||..+++.|+|++|...++..++..|.
T Consensus 205 -----------------~~~~ta~a~~ll~~al~----~D~~~i----ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 205 -----------------GQQMTAKARALLRQALA----LDPANI----RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred -----------------CCcccHHHHHHHHHHHh----cCCccH----HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 12256899999999999 566543 57788999999999999999999999999988
Q ss_pred CHHHHHhccc
Q 008246 546 YNELLEQLEN 555 (572)
Q Consensus 546 ~~~~l~~l~~ 555 (572)
+......+++
T Consensus 260 ~~~rr~~ie~ 269 (287)
T COG4235 260 DDPRRSLIER 269 (287)
T ss_pred CCchHHHHHH
Confidence 7765555554
No 75
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.94 E-value=2.8e-08 Score=91.13 Aligned_cols=131 Identities=20% Similarity=0.224 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~---~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~ 446 (572)
...+..+......++.+++...+++.++.+|+. ..+.+.+|.++...|++++|...|++++.. .|+ ..
T Consensus 12 ~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d----~~ 82 (145)
T PF09976_consen 12 SALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APD----PE 82 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCC----HH
Confidence 455667777778999999999999999999999 788889999999999999999999999973 222 22
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHc
Q 008246 447 LLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 526 (572)
Q Consensus 447 ~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~ 526 (572)
....+...++.++...| ++++|+..++.... .+- ...++..+|.+|...
T Consensus 83 l~~~a~l~LA~~~~~~~----------------------~~d~Al~~L~~~~~-----~~~----~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 83 LKPLARLRLARILLQQG----------------------QYDEALATLQQIPD-----EAF----KALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHHHHHHHHHHHcC----------------------CHHHHHHHHHhccC-----cch----HHHHHHHHHHHHHHC
Confidence 23346778888888888 99999999976322 221 123456799999999
Q ss_pred CCHHHHHHHHHHHH
Q 008246 527 GRNAEAEKYLRLAA 540 (572)
Q Consensus 527 g~~eeA~~~l~~aL 540 (572)
|++++|++.|++|+
T Consensus 132 g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 132 GDYDEARAAYQKAL 145 (145)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999999885
No 76
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.93 E-value=2.6e-09 Score=84.68 Aligned_cols=65 Identities=26% Similarity=0.404 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG-LLEEAVEYLECAISK 432 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g-~~~eA~~~~~rAl~~ 432 (572)
+++.+..+|..+...|++++|+.+|+++++.||+++.+|+.+|.++..+| ++++|++++++|+++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 57899999999999999999999999999999999999999999999999 799999999999985
No 77
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.92 E-value=4.3e-08 Score=105.58 Aligned_cols=218 Identities=15% Similarity=0.116 Sum_probs=132.4
Q ss_pred hHHHHHhhhHHHHHHHHH--HcCHH---HHhhh--CCCCCCCCCCCCCCccccccccccCCchhhhccccCCCCHHHHHH
Q 008246 302 SLVYWVTNSSFSIVQQLA--LKHPA---SRTML--GLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIA 374 (572)
Q Consensus 302 l~lYWi~s~~~sl~Q~~~--lr~~~---~r~~l--gip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~~~ 374 (572)
.+++|+...++++-...- ..... -++.+ |+-....++...+...+. ++.+..+.....++.
T Consensus 56 ~~~~~l~~~~~~~p~~~~~~~~~r~~~k~~~~~~~glla~~~g~~~~A~~~l~------------~~~~~~~~~~~~~ll 123 (409)
T TIGR00540 56 FAFEWGLRRFFRLGAHSRGWFSGRKRRKAQKQTEEALLKLAEGDYAKAEKLIA------------KNADHAAEPVLNLIK 123 (409)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH------------HHhhcCCCCHHHHHH
Confidence 357788887777765432 11111 11111 333334444333322222 233333444556677
Q ss_pred HHHHHHhcCCcccHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHH
Q 008246 375 LSVKFLSKGDKERPIPLLQLALNKEPDNI-NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (572)
Q Consensus 375 lA~~~~~~g~~~~A~~~l~~AL~~dP~~~-~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~ 453 (572)
.|..+.++|++++|.++++++.+..|++. .+....+.++...|++++|.+.+++..+. +|+++ .++.
T Consensus 124 aA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~~-------~~l~ 191 (409)
T TIGR00540 124 AAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEM-----APRHK-------EVLK 191 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH-------HHHH
Confidence 78888888999999999999888888875 56666788888999999999998888874 66664 2456
Q ss_pred HHHHHHHHhhchhhHH-----HHHh---hh-----hhHhh---hhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHH
Q 008246 454 WSGVACIRQAAHNFFE-----LVQQ---GQ-----LKLLS---FVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLV 517 (572)
Q Consensus 454 ~lG~~~~~~g~~~~~~-----a~~~---~~-----~~~~~---~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~ 517 (572)
.++.++.+.|+.+... ..+. .. ..... +...++.+++.+.++++.+ ..|.........+.
T Consensus 192 ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~----~~p~~~~~~~~l~~ 267 (409)
T TIGR00540 192 LAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK----NQPRHRRHNIALKI 267 (409)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH----HCCHHHhCCHHHHH
Confidence 6788888888444111 0100 00 00011 1333444555557777766 34422111234556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008246 518 VLASALCNVGRNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 518 ~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~ 547 (572)
.+|..+...|++++|.+.++++++.+|++.
T Consensus 268 ~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 268 ALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 788888888888888888888888888876
No 78
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.91 E-value=2.5e-08 Score=112.91 Aligned_cols=134 Identities=13% Similarity=0.131 Sum_probs=110.6
Q ss_pred HHhcCCccc---HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHH
Q 008246 379 FLSKGDKER---PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS 455 (572)
Q Consensus 379 ~~~~g~~~~---A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~l 455 (572)
....|.... ++.-+....+..|++++++++||.+..+.|++++|+.+++++++. .|++. .++.++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-----~Pd~~-------~a~~~~ 126 (694)
T PRK15179 59 LERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-----FPDSS-------EAFILM 126 (694)
T ss_pred HHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-----CCCcH-------HHHHHH
Confidence 334454444 455555666778999999999999999999999999999999986 56553 567888
Q ss_pred HHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 008246 456 GVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKY 535 (572)
Q Consensus 456 G~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~ 535 (572)
+.++.+++ ++++|+..++++++ .+|++. .++..+|.++.+.|++++|.++
T Consensus 127 a~~L~~~~----------------------~~eeA~~~~~~~l~----~~p~~~----~~~~~~a~~l~~~g~~~~A~~~ 176 (694)
T PRK15179 127 LRGVKRQQ----------------------GIEAGRAEIELYFS----GGSSSA----REILLEAKSWDEIGQSEQADAC 176 (694)
T ss_pred HHHHHHhc----------------------cHHHHHHHHHHHhh----cCCCCH----HHHHHHHHHHHHhcchHHHHHH
Confidence 99999999 99999999999999 566654 5677899999999999999999
Q ss_pred HHHHHHhCCCCHHHHHhcc
Q 008246 536 LRLAAAHNPQYNELLEQLE 554 (572)
Q Consensus 536 l~~aL~l~P~~~~~l~~l~ 554 (572)
|+++++.+|++.+.+-.+.
T Consensus 177 y~~~~~~~p~~~~~~~~~a 195 (694)
T PRK15179 177 FERLSRQHPEFENGYVGWA 195 (694)
T ss_pred HHHHHhcCCCcHHHHHHHH
Confidence 9999999999776554433
No 79
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.91 E-value=3e-09 Score=83.34 Aligned_cols=64 Identities=33% Similarity=0.552 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008246 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~ 441 (572)
+.+|..++..|++++|++.|+++++.+|+++++|+.+|.++..+|++++|+.+|+++++. +|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~-----~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL-----DPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----STT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCC
Confidence 468999999999999999999999999999999999999999999999999999999986 6665
No 80
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.91 E-value=1.7e-08 Score=95.25 Aligned_cols=91 Identities=20% Similarity=0.194 Sum_probs=71.0
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008246 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAG 437 (572)
Q Consensus 361 ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~---~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~ 437 (572)
.+..++..+..++.+|..+...|++++|+.+|+++++.+|+. +.+++.+|.++...|++++|+.+|++|++.
T Consensus 27 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 101 (172)
T PRK02603 27 PINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL----- 101 (172)
T ss_pred ccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 344455667778888999988999999999999999877664 468889999999999999999999999875
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHhh
Q 008246 438 HPTEPEAIDLLIVASQWSGVACIRQA 463 (572)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~~~~~~g 463 (572)
+|.+. .++..+|.++...|
T Consensus 102 ~p~~~-------~~~~~lg~~~~~~g 120 (172)
T PRK02603 102 NPKQP-------SALNNIAVIYHKRG 120 (172)
T ss_pred CcccH-------HHHHHHHHHHHHcC
Confidence 44432 34566788888777
No 81
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.91 E-value=4.8e-08 Score=104.80 Aligned_cols=177 Identities=15% Similarity=0.080 Sum_probs=112.8
Q ss_pred hhccccCCCCH-HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008246 359 QLKISVENLTP-KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAG 437 (572)
Q Consensus 359 ~~ai~~~~~~~-~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~ 437 (572)
..+.+.++.+. ......+..+...|++++|++.++++++.+|+++.++..++.+|.+.|++++|++.+.+..+.
T Consensus 142 ~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~----- 216 (398)
T PRK10747 142 ERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKA----- 216 (398)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-----
Confidence 34455555442 222345888889999999999999999999999999999999999999999999888877753
Q ss_pred CCCChhhhhHH-HH----------------------------------HHHHHHHHHHHhhchhhHHH-----H--Hhhh
Q 008246 438 HPTEPEAIDLL-IV----------------------------------ASQWSGVACIRQAAHNFFEL-----V--QQGQ 475 (572)
Q Consensus 438 ~P~~~~~~~~~-~~----------------------------------a~~~lG~~~~~~g~~~~~~a-----~--~~~~ 475 (572)
.+.+++..... .. ++..++..+...|+.+..+. . ..+.
T Consensus 217 ~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~ 296 (398)
T PRK10747 217 HVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDE 296 (398)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 12111111100 01 11222333333332111100 0 0011
Q ss_pred hh--HhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 476 LK--LLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 476 ~~--~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
.. .......++++++++.+++.++ .+|++. ..+..+|.++...|++++|+++|+++++.+|+...
T Consensus 297 ~l~~l~~~l~~~~~~~al~~~e~~lk----~~P~~~----~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 297 RLVLLIPRLKTNNPEQLEKVLRQQIK----QHGDTP----LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred HHHHHHhhccCCChHHHHHHHHHHHh----hCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 11 1122334677777777777776 344332 45677999999999999999999999999999876
No 82
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.91 E-value=1.6e-08 Score=116.46 Aligned_cols=168 Identities=13% Similarity=0.022 Sum_probs=110.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
-|..++..+..+....++|++++|+..|+++++.+|+++.+...+..++...|+.++|+.++++++. |.+.
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-------p~n~-- 100 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-------SMNI-- 100 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-------CCCC--
Confidence 3445668888888888888888888888888888888865555888888888888888888888883 2221
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHHHhhhh--------------hHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhh
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELVQQGQL--------------KLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKA 510 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~--------------~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~ 510 (572)
.......+|.++...|+.+ +|++..+. .+..+.+.++.++|++.++++.. .+|.+..
T Consensus 101 ---~~~~llalA~ly~~~gdyd--~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~----~dp~~~~ 171 (822)
T PRK14574 101 ---SSRGLASAARAYRNEKRWD--QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE----RDPTVQN 171 (822)
T ss_pred ---CHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc----cCcchHH
Confidence 0112333466777767322 22221111 12345566788888888888877 4554221
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 511 HYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 511 ~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
...++.++...++..+|++.|+++++.+|++.+.+.++-.
T Consensus 172 -----~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~ 211 (822)
T PRK14574 172 -----YMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLE 211 (822)
T ss_pred -----HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1334555555677767888888888888887776554443
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.90 E-value=8.2e-08 Score=96.47 Aligned_cols=176 Identities=16% Similarity=0.226 Sum_probs=137.6
Q ss_pred hhhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008246 358 KQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAG 437 (572)
Q Consensus 358 ~~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~ 437 (572)
|-.+|+.||.+-.+++..|..|+..|+-..|+.-+.+.|++-|+...|....|.+++.+|++++|+.-|++.+.-
T Consensus 61 yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~----- 135 (504)
T KOG0624|consen 61 YHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQH----- 135 (504)
T ss_pred HHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhc-----
Confidence 345899999999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred CCCChhhhhHHHHHHHHHHHHH----------HHhhchhhH----------H----HHHhhhhhHhhhhhhccHHHHHHH
Q 008246 438 HPTEPEAIDLLIVASQWSGVAC----------IRQAAHNFF----------E----LVQQGQLKLLSFVSQEKWEEGIAH 493 (572)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~~~----------~~~g~~~~~----------~----a~~~~~~~~~~~~~~g~~~eAi~~ 493 (572)
+|++....+ +...++.+. ...|..+.. | .+.++++++.||...|+...|+..
T Consensus 136 ~~s~~~~~e----aqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~D 211 (504)
T KOG0624|consen 136 EPSNGLVLE----AQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHD 211 (504)
T ss_pred CCCcchhHH----HHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 565431211 111121111 111101111 1 134566778899999999999999
Q ss_pred HHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008246 494 LERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 550 (572)
Q Consensus 494 l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l 550 (572)
++.+-+|. .| +. ++++..+..++..|+.+.++...++.|++||+++...
T Consensus 212 lk~askLs--~D--nT----e~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 212 LKQASKLS--QD--NT----EGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred HHHHHhcc--cc--ch----HHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 99999964 22 22 4566689999999999999999999999999987643
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.88 E-value=1.5e-08 Score=110.01 Aligned_cols=152 Identities=22% Similarity=0.149 Sum_probs=120.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-h
Q 008246 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF-L 435 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~--------dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~-~ 435 (572)
+|.-..+...+|..|..+|+++.|+..+++|++. .|.-......+|.+|...+++++|+..|++|+++.. .
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3444556677999999999999999999999999 676677777799999999999999999999998631 1
Q ss_pred cCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHH
Q 008246 436 AGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG 515 (572)
Q Consensus 436 ~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~a 515 (572)
.| + ..+....++.+++.+|.+.| +++||..++++|+++.......+...-...
T Consensus 275 ~G-~----~h~~va~~l~nLa~ly~~~G----------------------Kf~EA~~~~e~Al~I~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 275 FG-E----DHPAVAATLNNLAVLYYKQG----------------------KFAEAEEYCERALEIYEKLLGASHPEVAAQ 327 (508)
T ss_pred cC-C----CCHHHHHHHHHHHHHHhccC----------------------ChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 11 1 23344557888999999999 999999999999975433222223334456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008246 516 LVVLASALCNVGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 516 l~~Lg~~l~~~g~~eeA~~~l~~aL~l~ 543 (572)
+.+++.++..++++++|..+|++++++.
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 7889999999999999999999998874
No 85
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.88 E-value=2.2e-08 Score=87.29 Aligned_cols=100 Identities=21% Similarity=0.236 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~---~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~ 445 (572)
++.++.+|..+...|++++|+..|+++++.+|++ +.+++.+|.++...|++++|+.+|++++.. +|+++ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~-~- 74 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKSP-K- 74 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCCC-c-
Confidence 4678999999999999999999999999999987 689999999999999999999999999975 55542 1
Q ss_pred hHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 446 DLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 446 ~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
...+++.+|.++...| ++++|+..++++++
T Consensus 75 --~~~~~~~~~~~~~~~~----------------------~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 75 --APDALLKLGMSLQELG----------------------DKEKAKATLQQVIK 104 (119)
T ss_pred --ccHHHHHHHHHHHHhC----------------------ChHHHHHHHHHHHH
Confidence 1235788899999999 99999999999999
No 86
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.87 E-value=2.8e-08 Score=104.92 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=95.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhc
Q 008246 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQE 485 (572)
Q Consensus 406 ~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g 485 (572)
+...|..++..|++++|+++|++|+++ +|++. .+++++|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~~-------~a~~~~a~~~~~~g---------------------- 50 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL-----DPNNA-------ELYADRAQANIKLG---------------------- 50 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHHHHHHHHHHcC----------------------
Confidence 556789999999999999999999986 66653 46788999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccccchHH
Q 008246 486 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEEF 560 (572)
Q Consensus 486 ~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~~~~~~ 560 (572)
++++|+..++++++ .+|.+. .+++.+|.++..+|++++|+.+|+++++++|++..+...+.+..+.+
T Consensus 51 ~~~eAl~~~~~Al~----l~P~~~----~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 51 NFTEAVADANKAIE----LDPSLA----KAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHH----hCcCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999 456543 46677999999999999999999999999999988766665544443
No 87
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.87 E-value=5.1e-08 Score=84.94 Aligned_cols=113 Identities=20% Similarity=0.233 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhh
Q 008246 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFV 482 (572)
Q Consensus 403 ~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~ 482 (572)
++.++.+|..+...|++++|++.|+++++. +|+++ ....+++.+|.++.+.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~----~~~~~~~~l~~~~~~~~------------------- 53 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKST----YAPNAHYWLGEAYYAQG------------------- 53 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCcc----ccHHHHHHHHHHHHhhc-------------------
Confidence 468899999999999999999999999975 55442 11245788999999999
Q ss_pred hhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008246 483 SQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 551 (572)
Q Consensus 483 ~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~ 551 (572)
++++|++.|++++. .+|++. ....++..+|.++.+.|++++|.++++++++..|+......
T Consensus 54 ---~~~~A~~~~~~~~~----~~p~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 54 ---KYADAAKAFLAVVK----KYPKSP-KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred ---cHHHHHHHHHHHHH----HCCCCC-cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 99999999999998 344322 12356778999999999999999999999999999876443
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.87 E-value=4.4e-08 Score=102.86 Aligned_cols=110 Identities=19% Similarity=0.099 Sum_probs=68.0
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhh
Q 008246 397 NKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQL 476 (572)
Q Consensus 397 ~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~ 476 (572)
..+|++..++..+|.++..+|++++|+..+++++++ +|++. .++..+|.++.+.|
T Consensus 108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~p~~~-------~~~~~la~i~~~~g------------- 162 (355)
T cd05804 108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL-----NPDDA-------WAVHAVAHVLEMQG------------- 162 (355)
T ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCc-------HHHHHHHHHHHHcC-------------
Confidence 455666666666666777777777777777777664 44432 23455666666666
Q ss_pred hHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008246 477 KLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 544 (572)
Q Consensus 477 ~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P 544 (572)
++++|+.+++++++. .|.........+..+|.++...|++++|.+.|++++..+|
T Consensus 163 ---------~~~eA~~~l~~~l~~----~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 163 ---------RFKEGIAFMESWRDT----WDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred ---------CHHHHHHHHHhhhhc----cCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 777777777777763 2211111223344577777777777777777777766555
No 89
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.86 E-value=6.5e-08 Score=96.69 Aligned_cols=139 Identities=23% Similarity=0.270 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
+.-||++|..+....+.++|...+++|++.||++.+|-+.+|.++...|+|+.|++.++++++. +++..
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-----------n~~yl 248 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-----------NPEYL 248 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-----------ChHHH
Confidence 5678999999999999999999999999999999999999999999999999999999999984 55556
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCC
Q 008246 449 IVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 528 (572)
Q Consensus 449 ~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~ 528 (572)
......+-.+|.++| +.++.+..+.++.+ ..++. ++...++.......-
T Consensus 249 ~evl~~L~~~Y~~lg----------------------~~~~~~~fL~~~~~----~~~g~-----~~~l~l~~lie~~~G 297 (389)
T COG2956 249 SEVLEMLYECYAQLG----------------------KPAEGLNFLRRAME----TNTGA-----DAELMLADLIELQEG 297 (389)
T ss_pred HHHHHHHHHHHHHhC----------------------CHHHHHHHHHHHHH----ccCCc-----cHHHHHHHHHHHhhC
Confidence 666777888888888 99999999999998 34432 455678888888889
Q ss_pred HHHHHHHHHHHHHhCCCCHHH
Q 008246 529 NAEAEKYLRLAAAHNPQYNEL 549 (572)
Q Consensus 529 ~eeA~~~l~~aL~l~P~~~~~ 549 (572)
.++|..++.+-++.+|+...+
T Consensus 298 ~~~Aq~~l~~Ql~r~Pt~~gf 318 (389)
T COG2956 298 IDAAQAYLTRQLRRKPTMRGF 318 (389)
T ss_pred hHHHHHHHHHHHhhCCcHHHH
Confidence 999999999999999986543
No 90
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.84 E-value=6.8e-08 Score=107.46 Aligned_cols=134 Identities=16% Similarity=0.162 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
...++..|..+...|++++|++.+.++++.||.++.+|+.||.+|.++|+.+++..+.-.|..+ +|.+.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-----~p~d~------ 207 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-----NPKDY------ 207 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-----CCCCh------
Confidence 4677888999999999999999999999999999999999999999999999999999888875 77764
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCC
Q 008246 449 IVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 528 (572)
Q Consensus 449 ~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~ 528 (572)
.-|..++....++| ++++|+-+|.+|++ .+|.+.. -....+..|.+.|+
T Consensus 208 -e~W~~ladls~~~~----------------------~i~qA~~cy~rAI~----~~p~n~~----~~~ers~L~~~~G~ 256 (895)
T KOG2076|consen 208 -ELWKRLADLSEQLG----------------------NINQARYCYSRAIQ----ANPSNWE----LIYERSSLYQKTGD 256 (895)
T ss_pred -HHHHHHHHHHHhcc----------------------cHHHHHHHHHHHHh----cCCcchH----HHHHHHHHHHHhCh
Confidence 23677788888888 99999999999999 4565543 33458889999999
Q ss_pred HHHHHHHHHHHHHhCC
Q 008246 529 NAEAEKYLRLAAAHNP 544 (572)
Q Consensus 529 ~eeA~~~l~~aL~l~P 544 (572)
+.+|.+.|.+++.++|
T Consensus 257 ~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 257 LKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHHHHhhCC
Confidence 9999999999999998
No 91
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.82 E-value=1.3e-08 Score=113.64 Aligned_cols=186 Identities=20% Similarity=0.167 Sum_probs=141.2
Q ss_pred HcCHHHHhhhCCCCCCCCCCCCCCccccccccccCCchhhhccccCCCCHHHHHHHHHHHH------------hcCCccc
Q 008246 320 LKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKFL------------SKGDKER 387 (572)
Q Consensus 320 lr~~~~r~~lgip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~~~lA~~~~------------~~g~~~~ 387 (572)
=.+|.+|.++|--+..+...-.++..++. ...+.... .|+..++.+|..++ +++++++
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~---------i~~~~~~~-~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K 630 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPAKKKFET---------ILKKTSTK-TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK 630 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccHHHH---------HHhhhccC-CchhHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence 34788899998666655544444332221 01122222 46677788888765 3456788
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhh
Q 008246 388 PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNF 467 (572)
Q Consensus 388 A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~ 467 (572)
|+++|.++|+.||.|.-|-.+.|.++...|++.+|.+.|.++.+- ..-...+|.++|.||..+|
T Consensus 631 Alq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa------------~~~~~dv~lNlah~~~e~~---- 694 (1018)
T KOG2002|consen 631 ALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA------------TSDFEDVWLNLAHCYVEQG---- 694 (1018)
T ss_pred HHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHH------------HhhCCceeeeHHHHHHHHH----
Confidence 999999999999999999999999999999999999999999872 1111246889999999999
Q ss_pred HHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008246 468 FELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 468 ~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~ 547 (572)
+|-.|++.|+.+++- ..+.+ ..+.+..||.++++.|++.+|.+++..|+...|.+.
T Consensus 695 ------------------qy~~AIqmYe~~lkk---f~~~~---~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~ 750 (1018)
T KOG2002|consen 695 ------------------QYRLAIQMYENCLKK---FYKKN---RSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNT 750 (1018)
T ss_pred ------------------HHHHHHHHHHHHHHH---hcccC---CHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccc
Confidence 999999999999983 22222 236788899999999999999999999999999976
Q ss_pred HHHHhccc
Q 008246 548 ELLEQLEN 555 (572)
Q Consensus 548 ~~l~~l~~ 555 (572)
.+.-++.-
T Consensus 751 ~v~FN~a~ 758 (1018)
T KOG2002|consen 751 SVKFNLAL 758 (1018)
T ss_pred hHHhHHHH
Confidence 65544443
No 92
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.82 E-value=9.9e-08 Score=110.07 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=101.6
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
++++.++|.....+..+|..+..+|++++|++.|+++++.+|++++++..++.+|...|+.++|++.+++++.. +
T Consensus 92 eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-----d 166 (822)
T PRK14574 92 ERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER-----D 166 (822)
T ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-----C
Confidence 55666677777777777888888888888888888888888888888888888888888888888888887753 3
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHH
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV 518 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~ 518 (572)
|... ++ ++.++...+ .+++.+|++.|+++++ .+|.+. +.+..
T Consensus 167 p~~~---------~~-l~layL~~~--------------------~~~~~~AL~~~ekll~----~~P~n~----e~~~~ 208 (822)
T PRK14574 167 PTVQ---------NY-MTLSYLNRA--------------------TDRNYDALQASSEAVR----LAPTSE----EVLKN 208 (822)
T ss_pred cchH---------HH-HHHHHHHHh--------------------cchHHHHHHHHHHHHH----hCCCCH----HHHHH
Confidence 3321 11 333333322 2377779999999999 566554 34456
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 519 LASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 519 Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
+..++.+.|-...|.+..+ ..|+.
T Consensus 209 ~~~~l~~~~~~~~a~~l~~----~~p~~ 232 (822)
T PRK14574 209 HLEILQRNRIVEPALRLAK----ENPNL 232 (822)
T ss_pred HHHHHHHcCCcHHHHHHHH----hCccc
Confidence 7888999999988886554 46654
No 93
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.81 E-value=3e-07 Score=89.33 Aligned_cols=157 Identities=20% Similarity=0.227 Sum_probs=116.8
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~---~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
+++.++..|..+++.|++++|+..|++.+...|++ .++.+.+|.+++..|++++|+..|++-++. .|+++ .
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~-----yP~~~-~ 77 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL-----YPNSP-K 77 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT-T-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCc-c
Confidence 57899999999999999999999999999999876 689999999999999999999999999986 78775 2
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhh-------------
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAH------------- 511 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~------------- 511 (572)
...+++.+|.++......-+ .....++...+|+..|+..++ ..|++...
T Consensus 78 ---~~~A~Y~~g~~~~~~~~~~~-----------~~~~D~~~~~~A~~~~~~li~----~yP~S~y~~~A~~~l~~l~~~ 139 (203)
T PF13525_consen 78 ---ADYALYMLGLSYYKQIPGIL-----------RSDRDQTSTRKAIEEFEELIK----RYPNSEYAEEAKKRLAELRNR 139 (203)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH------------TT---HHHHHHHHHHHHHHH----H-TTSTTHHHHHHHHHHHHHH
T ss_pred ---hhhHHHHHHHHHHHhCccch-----------hcccChHHHHHHHHHHHHHHH----HCcCchHHHHHHHHHHHHHHH
Confidence 23568888998877751100 112234466788888888888 45544211
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 512 YYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 512 ~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
...--+..|..|.+.|++..|...++.+++..|+...
T Consensus 140 la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~ 176 (203)
T PF13525_consen 140 LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPA 176 (203)
T ss_dssp HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCch
Confidence 0111256799999999999999999999999999764
No 94
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.80 E-value=3.2e-07 Score=91.63 Aligned_cols=165 Identities=14% Similarity=0.083 Sum_probs=122.4
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008246 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINAL---ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (572)
Q Consensus 367 ~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~---~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~ 443 (572)
.+++.++..|..+..+|++++|++.|+++++.+|+...+. +.+|.+|.+.|++++|+..|++.++. +|+++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P~~~- 103 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPTHP- 103 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CcCCC-
Confidence 4678899999999999999999999999999999997665 89999999999999999999999986 88876
Q ss_pred hhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhh------------
Q 008246 444 AIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAH------------ 511 (572)
Q Consensus 444 ~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~------------ 511 (572)
.. ..+++.+|.++...+...+..-... ......+....+|++.|++.++ ..|++...
T Consensus 104 ~~---~~a~Y~~g~~~~~~~~~~~~~~~~~----~~~~rD~~~~~~A~~~~~~li~----~yP~S~ya~~A~~rl~~l~~ 172 (243)
T PRK10866 104 NI---DYVLYMRGLTNMALDDSALQGFFGV----DRSDRDPQHARAAFRDFSKLVR----GYPNSQYTTDATKRLVFLKD 172 (243)
T ss_pred ch---HHHHHHHHHhhhhcchhhhhhccCC----CccccCHHHHHHHHHHHHHHHH----HCcCChhHHHHHHHHHHHHH
Confidence 22 2467888888766652111000000 0001112234678888888888 56654311
Q ss_pred -hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 512 -YYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 512 -~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
..+--+..|..|.+.|++..|+.-++.+++..|+...
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~ 210 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQA 210 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCch
Confidence 0011246789999999999999999999999998654
No 95
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=7.1e-08 Score=98.97 Aligned_cols=176 Identities=14% Similarity=0.070 Sum_probs=133.0
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
.+.|..++.+.++++..|..+.+.|+.++|+-.|+.|..+.|-+-+.|-+|-..|+..|++.||...-+.++.. -
T Consensus 324 eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-----~ 398 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-----F 398 (564)
T ss_pred HHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-----h
Confidence 45788999999999999999999999999999999999999999999999999999999999999999988874 2
Q ss_pred CCChhhhhHHHHHHHHHH-HHHHHhh--ch---hhHH-HHHhh-------hhhHhhhhhhccHHHHHHHHHHHhcCCCCC
Q 008246 439 PTEPEAIDLLIVASQWSG-VACIRQA--AH---NFFE-LVQQG-------QLKLLSFVSQEKWEEGIAHLERIGNLKEPE 504 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG-~~~~~~g--~~---~~~~-a~~~~-------~~~~~~~~~~g~~~eAi~~l~kal~l~~p~ 504 (572)
|++. .+...+| .++...- +. +|.+ ..... ...+..+...|++++++..+++.+. +
T Consensus 399 ~~sA-------~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~----~ 467 (564)
T KOG1174|consen 399 QNSA-------RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI----I 467 (564)
T ss_pred hcch-------hhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh----h
Confidence 3332 1223333 2221111 00 1211 11111 1123345567899999999999998 4
Q ss_pred CCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 505 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 505 dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
.|+. ..+..||+++...+.+.+|.++|..||++||+++..++-+.+
T Consensus 468 ~~D~-----~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 468 FPDV-----NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRL 513 (564)
T ss_pred cccc-----HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 5543 345679999999999999999999999999999876554433
No 96
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=8.9e-09 Score=102.70 Aligned_cols=107 Identities=13% Similarity=0.083 Sum_probs=86.8
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEP---DNINALILMGQTQLQKGLLEEAVEYLECAISKLFL 435 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP---~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~ 435 (572)
.+-++.--.+++.++++|.+++-.+++|-++..|++|+...- .-+++||++|.+....||+.-|..+|+-|+.
T Consensus 348 RRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~---- 423 (478)
T KOG1129|consen 348 RRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT---- 423 (478)
T ss_pred HHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc----
Confidence 444566667788889999999988999999999999887643 2378899999999999999999999988885
Q ss_pred cCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 436 AGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 436 ~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
..+....++.++|....+.| +.++|...|..+-.
T Consensus 424 --------~d~~h~ealnNLavL~~r~G----------------------~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 424 --------SDAQHGEALNNLAVLAARSG----------------------DILGARSLLNAAKS 457 (478)
T ss_pred --------cCcchHHHHHhHHHHHhhcC----------------------chHHHHHHHHHhhh
Confidence 12223467888998888888 99999999999887
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=7.9e-08 Score=101.80 Aligned_cols=139 Identities=18% Similarity=0.226 Sum_probs=113.7
Q ss_pred HHHHHHhcCCcccHHHHHHHHHh--------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008246 375 LSVKFLSKGDKERPIPLLQLALN--------------------------KEPDNINALILMGQTQLQKGLLEEAVEYLEC 428 (572)
Q Consensus 375 lA~~~~~~g~~~~A~~~l~~AL~--------------------------~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~r 428 (572)
.|..+...++++.|+.+|+++|. .+|+-+.--..-|.-++..|+|.+|+.+|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 44555556666666666666665 4566666666779999999999999999999
Q ss_pred HHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCch
Q 008246 429 AISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKS 508 (572)
Q Consensus 429 Al~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~ 508 (572)
|+.. +|++. ..|-+.+.||.++| ++.+|++..+++++ .||..
T Consensus 384 AIkr-----~P~Da-------~lYsNRAac~~kL~----------------------~~~~aL~Da~~~ie----L~p~~ 425 (539)
T KOG0548|consen 384 AIKR-----DPEDA-------RLYSNRAACYLKLG----------------------EYPEALKDAKKCIE----LDPNF 425 (539)
T ss_pred HHhc-----CCchh-------HHHHHHHHHHHHHh----------------------hHHHHHHHHHHHHh----cCchH
Confidence 9975 67764 56788999999999 99999999999999 56654
Q ss_pred hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 509 KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 509 ~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
..++..-|.++..+.+|++|.+.|.++++.||+..++...+.+
T Consensus 426 ----~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 426 ----IKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRR 468 (539)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 4566678999999999999999999999999999887776655
No 98
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.79 E-value=6.8e-08 Score=78.34 Aligned_cols=95 Identities=26% Similarity=0.357 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~ 450 (572)
.++.+|..+...|++++|+..++++++.+|++..+++.+|.++...|++++|.++|++++.. .|.+. .
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-------~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-----DPDNA-------K 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCcch-------h
Confidence 47889999999999999999999999999999999999999999999999999999999974 44432 3
Q ss_pred HHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 451 ASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 451 a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
.+..+|.++...| ++++|...++++++
T Consensus 70 ~~~~~~~~~~~~~----------------------~~~~a~~~~~~~~~ 96 (100)
T cd00189 70 AYYNLGLAYYKLG----------------------KYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHH----------------------hHHHHHHHHHHHHc
Confidence 5677888898899 99999999999988
No 99
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.78 E-value=1.3e-07 Score=88.81 Aligned_cols=128 Identities=13% Similarity=0.016 Sum_probs=80.7
Q ss_pred CCcccHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHH
Q 008246 383 GDKERPIPLLQLALNKEPDN--INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACI 460 (572)
Q Consensus 383 g~~~~A~~~l~~AL~~dP~~--~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~ 460 (572)
+.+..+...+.+.++.++.+ +..++.+|.++...|++++|+.+|++|+.+ .|+.. ....++.++|.++.
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l-----~~~~~----~~~~~~~~lg~~~~ 83 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRL-----EIDPY----DRSYILYNIGLIHT 83 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----cccch----hhHHHHHHHHHHHH
Confidence 34555666665555555555 566677777777777777777777777763 22211 11235677777777
Q ss_pred HhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHH-------HcCCHH---
Q 008246 461 RQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC-------NVGRNA--- 530 (572)
Q Consensus 461 ~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~-------~~g~~e--- 530 (572)
..| ++++|++.++++++ .+|... ..+.++|.++. ..|+++
T Consensus 84 ~~g----------------------~~~eA~~~~~~Al~----~~~~~~----~~~~~la~i~~~~~~~~~~~g~~~~A~ 133 (168)
T CHL00033 84 SNG----------------------EHTKALEYYFQALE----RNPFLP----QALNNMAVICHYRGEQAIEQGDSEIAE 133 (168)
T ss_pred HcC----------------------CHHHHHHHHHHHHH----hCcCcH----HHHHHHHHHHHHhhHHHHHcccHHHHH
Confidence 777 77777777777777 233322 33444555555 666655
Q ss_pred ----HHHHHHHHHHHhCCCCHHH
Q 008246 531 ----EAEKYLRLAAAHNPQYNEL 549 (572)
Q Consensus 531 ----eA~~~l~~aL~l~P~~~~~ 549 (572)
+|..+|++++..+|+....
T Consensus 134 ~~~~~a~~~~~~a~~~~p~~~~~ 156 (168)
T CHL00033 134 AWFDQAAEYWKQAIALAPGNYIE 156 (168)
T ss_pred HHHHHHHHHHHHHHHhCcccHHH
Confidence 6677777888888876543
No 100
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.78 E-value=1.3e-07 Score=88.84 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~---~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
....++.+|..+...|++++|+..|++++++.|++ +.++.++|.++...|++++|+++|++|+++ +|...
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-----~~~~~-- 106 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-----NPFLP-- 106 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCcH--
Confidence 36778999999999999999999999999997764 469999999999999999999999999985 45443
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
..+.++|.++...|+... ...+.-.....+++|+.++++++.
T Consensus 107 -----~~~~~la~i~~~~~~~~~--------~~g~~~~A~~~~~~a~~~~~~a~~ 148 (168)
T CHL00033 107 -----QALNNMAVICHYRGEQAI--------EQGDSEIAEAWFDQAAEYWKQAIA 148 (168)
T ss_pred -----HHHHHHHHHHHHhhHHHH--------HcccHHHHHHHHHHHHHHHHHHHH
Confidence 345666777775551100 000000111245677778888887
No 101
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.76 E-value=6.4e-08 Score=105.09 Aligned_cols=144 Identities=17% Similarity=0.127 Sum_probs=107.3
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008246 374 ALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (572)
Q Consensus 374 ~lA~~~~~~g~~~~A~~~l~~AL~~--------dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~ 445 (572)
.+|..|...+++++|+..|++|+.. +|.-+.++.+||.+|...|++++|..++++|+++.. . .+.. ..
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~-~-~~~~--~~ 321 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYE-K-LLGA--SH 321 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH-H-hhcc--Ch
Confidence 5899999999999999999999974 566688999999999999999999999999998621 0 0000 11
Q ss_pred hHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHH
Q 008246 446 DLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN 525 (572)
Q Consensus 446 ~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~ 525 (572)
+.....+..++.++...+ ++++|+.+|++++++.................+||.+|..
T Consensus 322 ~~v~~~l~~~~~~~~~~~----------------------~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~ 379 (508)
T KOG1840|consen 322 PEVAAQLSELAAILQSMN----------------------EYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK 379 (508)
T ss_pred HHHHHHHHHHHHHHHHhc----------------------chhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 112223455566666666 9999999999998753200111111123445789999999
Q ss_pred cCCHHHHHHHHHHHHHhC
Q 008246 526 VGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 526 ~g~~eeA~~~l~~aL~l~ 543 (572)
.|+++||+++|++|+...
T Consensus 380 ~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 380 MGKYKEAEELYKKAIQIL 397 (508)
T ss_pred hcchhHHHHHHHHHHHHH
Confidence 999999999999999875
No 102
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.74 E-value=1.8e-07 Score=104.76 Aligned_cols=157 Identities=18% Similarity=0.122 Sum_probs=125.7
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCC---cccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q 008246 360 LKISVENLTPKELIALSVKFLSKGD---KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~---~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~ 436 (572)
+++++||.+..+++.+|...+...+ +..|...+.+|...+++||.++..|+.-++..|+|..+....+.|+..
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~---- 299 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN---- 299 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh----
Confidence 7888999889999999988776554 556899999999999999999999999999999999999999999863
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHH
Q 008246 437 GHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL 516 (572)
Q Consensus 437 ~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al 516 (572)
.. ........+|++|.++..+| +|++|..+|.++++ .++++ +.-++
T Consensus 300 --t~---~~~~~aes~Y~~gRs~Ha~G----------------------d~ekA~~yY~~s~k----~~~d~---~~l~~ 345 (1018)
T KOG2002|consen 300 --TE---NKSIKAESFYQLGRSYHAQG----------------------DFEKAFKYYMESLK----ADNDN---FVLPL 345 (1018)
T ss_pred --hh---hhHHHHHHHHHHHHHHHhhc----------------------cHHHHHHHHHHHHc----cCCCC---ccccc
Confidence 11 12233456889999999999 88999998888888 34443 33455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhcc
Q 008246 517 VVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 554 (572)
Q Consensus 517 ~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~ 554 (572)
+.+|..|...|++++|..+|+++++..|++.+.+..+.
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 67888888889999999999998888888876554443
No 103
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.74 E-value=5.7e-07 Score=90.54 Aligned_cols=190 Identities=16% Similarity=0.169 Sum_probs=144.7
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008246 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P 439 (572)
+-+++.|-++..+...|.+|...|+...|+.-++.+-++..++.++++..+.+++..|+.+.++...+..+.+ +|
T Consensus 180 ~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl-----dp 254 (504)
T KOG0624|consen 180 HLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL-----DP 254 (504)
T ss_pred HHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-----Cc
Confidence 3557778888889999999999999999999999999999999999999999999999999999999999985 77
Q ss_pred CChhhhhHHHHHHHHH---------HHHHHHhhchhhHHHHHhhhh------------------hHhhhhhhccHHHHHH
Q 008246 440 TEPEAIDLLIVASQWS---------GVACIRQAAHNFFELVQQGQL------------------KLLSFVSQEKWEEGIA 492 (572)
Q Consensus 440 ~~~~~~~~~~~a~~~l---------G~~~~~~g~~~~~~a~~~~~~------------------~~~~~~~~g~~~eAi~ 492 (572)
++..-.+. |-.+ +....+.+ ++.++.+.++. ...|+...+++.||++
T Consensus 255 dHK~Cf~~----YKklkKv~K~les~e~~ie~~--~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 255 DHKLCFPF----YKKLKKVVKSLESAEQAIEEK--HWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred chhhHHHH----HHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 66411111 1111 11111111 22333322221 2346888999999999
Q ss_pred HHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccccchHHhhhhhhhhccCC
Q 008246 493 HLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEEFVSDLSSSRRRDY 572 (572)
Q Consensus 493 ~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 572 (572)
...++++ .+|++. +++...|.+|.....||+|+.-|++|.+.|+++....+-++++..- ..++.+|||
T Consensus 329 qC~evL~----~d~~dv----~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrl----kkqs~kRDY 396 (504)
T KOG0624|consen 329 QCKEVLD----IDPDDV----QVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRL----KKQSGKRDY 396 (504)
T ss_pred HHHHHHh----cCchHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----HHHhccchH
Confidence 9999999 677654 4566699999999999999999999999999999888877773221 455667776
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.73 E-value=4.3e-07 Score=95.30 Aligned_cols=160 Identities=12% Similarity=0.095 Sum_probs=117.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008246 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~---~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~ 441 (572)
||..+..+..+|..+...|+.++|...++++.+..|.+ .+..+..|.++...|++++|.+.++++++. +|++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~P~~ 76 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD-----YPRD 76 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCc
Confidence 67778889999999988899999888899888888755 566778888999999999999999999875 6665
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhc----hh-hHHHHH----hh-------hhhHhhhhhhccHHHHHHHHHHHhcCCCCCC
Q 008246 442 PEAIDLLIVASQWSGVACIRQAA----HN-FFELVQ----QG-------QLKLLSFVSQEKWEEGIAHLERIGNLKEPEE 505 (572)
Q Consensus 442 ~~~~~~~~~a~~~lG~~~~~~g~----~~-~~~a~~----~~-------~~~~~~~~~~g~~~eAi~~l~kal~l~~p~d 505 (572)
. .++.. +..+...|. .+ ..++.. .. ...+.++..+|++++|++.+++++++ +
T Consensus 77 ~-------~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~----~ 144 (355)
T cd05804 77 L-------LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL----N 144 (355)
T ss_pred H-------HHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----C
Confidence 3 11221 333333331 11 111111 11 11234567889999999999999993 4
Q ss_pred CchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008246 506 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 506 p~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~ 545 (572)
|++. .++..+|.++.+.|++++|+++++++++..|.
T Consensus 145 p~~~----~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 145 PDDA----WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred CCCc----HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 4432 45678999999999999999999999998874
No 105
>PRK11906 transcriptional regulator; Provisional
Probab=98.71 E-value=3.3e-07 Score=96.84 Aligned_cols=143 Identities=9% Similarity=0.008 Sum_probs=117.9
Q ss_pred cccCCC---CHH--HHHHHHHHHHhcCC---cccHHHHHHHHH---hhCCCCHHHHHHHHHHHHHc---------CCHHH
Q 008246 362 ISVENL---TPK--ELIALSVKFLSKGD---KERPIPLLQLAL---NKEPDNINALILMGQTQLQK---------GLLEE 421 (572)
Q Consensus 362 i~~~~~---~~~--~~~~lA~~~~~~g~---~~~A~~~l~~AL---~~dP~~~~a~~~LG~l~~~~---------g~~~e 421 (572)
..++++ ++. .++..|..++.++. .++|..+|.+|+ ++||+++.+|-.++.++... .+..+
T Consensus 243 ~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~ 322 (458)
T PRK11906 243 LAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQK 322 (458)
T ss_pred CCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 334455 555 67888988877664 456889999999 99999999999999998644 34568
Q ss_pred HHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCC
Q 008246 422 AVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLK 501 (572)
Q Consensus 422 A~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~ 501 (572)
|.++.++|+++ +|.|+ .++..+|.+....+ +++.|...|++|+.
T Consensus 323 a~~~A~rAvel-----d~~Da-------~a~~~~g~~~~~~~----------------------~~~~a~~~f~rA~~-- 366 (458)
T PRK11906 323 ALELLDYVSDI-----TTVDG-------KILAIMGLITGLSG----------------------QAKVSHILFEQAKI-- 366 (458)
T ss_pred HHHHHHHHHhc-----CCCCH-------HHHHHHHHHHHhhc----------------------chhhHHHHHHHHhh--
Confidence 88999999986 66664 46777899888888 99999999999999
Q ss_pred CCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 502 EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 502 ~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
.+|+.. .+++..|.++...|+.++|.++.+++++++|.-
T Consensus 367 --L~Pn~A----~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 367 --HSTDIA----SLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred --cCCccH----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 567544 567789999999999999999999999999974
No 106
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.70 E-value=1.9e-07 Score=94.14 Aligned_cols=108 Identities=20% Similarity=0.242 Sum_probs=93.4
Q ss_pred CCCHHHHHHHHHHH-HhcCCcccHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008246 366 NLTPKELIALSVKF-LSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (572)
Q Consensus 366 ~~~~~~~~~lA~~~-~~~g~~~~A~~~l~~AL~~dP~~---~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~ 441 (572)
+.+....+..|..+ ...|++++|+..|++.++.+|++ +.+++.+|.+|+..|++++|+.+|++++.. .|++
T Consensus 139 ~~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-----yP~s 213 (263)
T PRK10803 139 SGDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-----YPKS 213 (263)
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCC
Confidence 34567888888887 56799999999999999999999 589999999999999999999999999975 6766
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCch
Q 008246 442 PEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKS 508 (572)
Q Consensus 442 ~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~ 508 (572)
+.. ..+++.+|.++..+| ++++|++.|+++++ ..|++
T Consensus 214 ~~~----~dAl~klg~~~~~~g----------------------~~~~A~~~~~~vi~----~yP~s 250 (263)
T PRK10803 214 PKA----ADAMFKVGVIMQDKG----------------------DTAKAKAVYQQVIK----KYPGT 250 (263)
T ss_pred cch----hHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHH----HCcCC
Confidence 422 346788899999999 99999999999999 56654
No 107
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=8.6e-08 Score=98.56 Aligned_cols=154 Identities=15% Similarity=0.070 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~ 449 (572)
..-+..+.++...|++++|...--..+++|+.+.++++..|.++...++.+.|+.+|++++.+ +|+..+
T Consensus 170 ~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-----dpdh~~------ 238 (486)
T KOG0550|consen 170 KAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL-----DPDHQK------ 238 (486)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc-----Chhhhh------
Confidence 344667888889999999999999999999999999999999999999999999999999985 555431
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCH
Q 008246 450 VASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRN 529 (572)
Q Consensus 450 ~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~ 529 (572)
.+.++.... ....-...++-..+.|+|.+|.+.|..++. .||.+.......+.++|.+...+|+.
T Consensus 239 -----sk~~~~~~k------~le~~k~~gN~~fk~G~y~~A~E~Yteal~----idP~n~~~naklY~nra~v~~rLgrl 303 (486)
T KOG0550|consen 239 -----SKSASMMPK------KLEVKKERGNDAFKNGNYRKAYECYTEALN----IDPSNKKTNAKLYGNRALVNIRLGRL 303 (486)
T ss_pred -----HHhHhhhHH------HHHHHHhhhhhHhhccchhHHHHHHHHhhc----CCccccchhHHHHHHhHhhhcccCCc
Confidence 111111111 111111233445566799999999999999 67877777777788999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHH
Q 008246 530 AEAEKYLRLAAAHNPQYNEL 549 (572)
Q Consensus 530 eeA~~~l~~aL~l~P~~~~~ 549 (572)
+||+.-.++++.+||.+...
T Consensus 304 ~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 304 REAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhhhhhhhhhhhcCHHHHHH
Confidence 99999999999999998653
No 108
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.69 E-value=2.8e-07 Score=74.67 Aligned_cols=99 Identities=26% Similarity=0.346 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhh
Q 008246 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQ 484 (572)
Q Consensus 405 a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~ 484 (572)
+++.+|.++...|++++|+..++++++. .|.+. .++..+|.++...|
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~~~~~~~~~~~--------------------- 48 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL-----DPDNA-------DAYYNLAAAYYKLG--------------------- 48 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc-----CCccH-------HHHHHHHHHHHHHH---------------------
Confidence 6789999999999999999999999974 44432 45778899999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008246 485 EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 485 g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~ 545 (572)
++++|++.++++++. .|.+. ..+..+|.++...|++++|.++++++++.+|+
T Consensus 49 -~~~~a~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 49 -KYEEALEDYEKALEL----DPDNA----KAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred -HHHHHHHHHHHHHhC----CCcch----hHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 999999999999983 34332 45667999999999999999999999998874
No 109
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.68 E-value=4.3e-07 Score=91.49 Aligned_cols=114 Identities=15% Similarity=0.188 Sum_probs=94.0
Q ss_pred CCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhH
Q 008246 400 PDNINALILMGQTQ-LQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKL 478 (572)
Q Consensus 400 P~~~~a~~~LG~l~-~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~ 478 (572)
..+...+|..|..+ ...|++++|+..|++.+.. .|++. ....+++++|.+++..|
T Consensus 139 ~~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-----yP~s~----~a~~A~y~LG~~y~~~g--------------- 194 (263)
T PRK10803 139 SGDANTDYNAAIALVQDKSRQDDAIVAFQNFVKK-----YPDST----YQPNANYWLGQLNYNKG--------------- 194 (263)
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCc----chHHHHHHHHHHHHHcC---------------
Confidence 33567788888766 6679999999999999986 77664 22347899999999999
Q ss_pred hhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008246 479 LSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 549 (572)
Q Consensus 479 ~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~ 549 (572)
++++|+..|+++++ ..|++|. ..++++.+|.++..+|++++|.+.|+++++..|+....
T Consensus 195 -------~~~~A~~~f~~vv~-~yP~s~~----~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 195 -------KKDDAAYYFASVVK-NYPKSPK----AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred -------CHHHHHHHHHHHHH-HCCCCcc----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999999998 2344443 34778889999999999999999999999999998643
No 110
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.4e-07 Score=92.67 Aligned_cols=115 Identities=16% Similarity=0.179 Sum_probs=102.0
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhhh
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGL---LEEAVEYLECAISKLFL 435 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~---~~eA~~~~~rAl~~l~~ 435 (572)
+..+..+|.|++.+..+|..|+..|+++.|...|++|++++|++++.+..+|.++..+.+ ..++.+.+++|+.+
T Consensus 146 e~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--- 222 (287)
T COG4235 146 ETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--- 222 (287)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc---
Confidence 567888999999999999999999999999999999999999999999999999865543 67899999999985
Q ss_pred cCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCc
Q 008246 436 AGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPK 507 (572)
Q Consensus 436 ~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~ 507 (572)
+|++. ++.+.+|..+.++| +|++|+..++..+++.+|++|.
T Consensus 223 --D~~~i-------ral~lLA~~afe~g----------------------~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 223 --DPANI-------RALSLLAFAAFEQG----------------------DYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred --CCccH-------HHHHHHHHHHHHcc----------------------cHHHHHHHHHHHHhcCCCCCch
Confidence 66653 56788999999999 9999999999999977666664
No 111
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=1.1e-06 Score=85.52 Aligned_cols=141 Identities=17% Similarity=0.107 Sum_probs=104.4
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008246 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~ 445 (572)
|.+....-..|..+...|++++|+++|+..|+.||.|...+-..=-+...+|+.-+|++.+..-+++ .+.|.
T Consensus 83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-----F~~D~--- 154 (289)
T KOG3060|consen 83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-----FMNDQ--- 154 (289)
T ss_pred CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-----hcCcH---
Confidence 3445566777888888888888888888888888888888887777777888888888888777765 44443
Q ss_pred hHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHH
Q 008246 446 DLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN 525 (572)
Q Consensus 446 ~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~ 525 (572)
.+|..++..|...| +|++|.-+|++++= .+|.+...+ ..+|.+++-
T Consensus 155 ----EAW~eLaeiY~~~~----------------------~f~kA~fClEE~ll----~~P~n~l~f----~rlae~~Yt 200 (289)
T KOG3060|consen 155 ----EAWHELAEIYLSEG----------------------DFEKAAFCLEELLL----IQPFNPLYF----QRLAEVLYT 200 (289)
T ss_pred ----HHHHHHHHHHHhHh----------------------HHHHHHHHHHHHHH----cCCCcHHHH----HHHHHHHHH
Confidence 46777888888888 99999999999987 344433222 235666555
Q ss_pred cC---CHHHHHHHHHHHHHhCCCCHH
Q 008246 526 VG---RNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 526 ~g---~~eeA~~~l~~aL~l~P~~~~ 548 (572)
+| +++-|.++|.++++++|.+..
T Consensus 201 ~gg~eN~~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 201 QGGAENLELARKYYERALKLNPKNLR 226 (289)
T ss_pred HhhHHHHHHHHHHHHHHHHhChHhHH
Confidence 54 566789999999999995443
No 112
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=1.6e-07 Score=97.20 Aligned_cols=145 Identities=18% Similarity=0.138 Sum_probs=97.3
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
..++.+|-.++.++.+.|...+..|++++|...|++||.-|....+++++.|..+..+|+.++|+++|-+.-.++
T Consensus 480 d~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il----- 554 (840)
T KOG2003|consen 480 DIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL----- 554 (840)
T ss_pred HHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-----
Confidence 578888888888888888888888999999999999998888888999999998889999999999888766542
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHH
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV 518 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~ 518 (572)
. .....++.++.+|..+. +..+|+++|-++..+ -|.|| ..+..
T Consensus 555 -----~--nn~evl~qianiye~le----------------------d~aqaie~~~q~~sl-ip~dp-------~ilsk 597 (840)
T KOG2003|consen 555 -----L--NNAEVLVQIANIYELLE----------------------DPAQAIELLMQANSL-IPNDP-------AILSK 597 (840)
T ss_pred -----H--hhHHHHHHHHHHHHHhh----------------------CHHHHHHHHHHhccc-CCCCH-------HHHHH
Confidence 1 11234566677776666 666666666666653 23343 12233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008246 519 LASALCNVGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 519 Lg~~l~~~g~~eeA~~~l~~aL~l~P~ 545 (572)
||..|-+.|+...|..++-...+.-|-
T Consensus 598 l~dlydqegdksqafq~~ydsyryfp~ 624 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRYFPC 624 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccccCc
Confidence 444444444444444444333333333
No 113
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.62 E-value=9.6e-08 Score=78.91 Aligned_cols=82 Identities=26% Similarity=0.306 Sum_probs=66.6
Q ss_pred hcCCcccHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHH
Q 008246 381 SKGDKERPIPLLQLALNKEPD--NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA 458 (572)
Q Consensus 381 ~~g~~~~A~~~l~~AL~~dP~--~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~ 458 (572)
++|++++|+..++++++.+|. +...++.+|.+|++.|++++|++.+++ ... .... ...++.+|.+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-----------~~~~-~~~~~l~a~~ 67 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-----------DPSN-PDIHYLLARC 67 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-----------HHCH-HHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-----------CCCC-HHHHHHHHHH
Confidence 468999999999999999995 577888899999999999999999998 432 1111 2445667999
Q ss_pred HHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHH
Q 008246 459 CIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERI 497 (572)
Q Consensus 459 ~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~ka 497 (572)
+.++| ++++|+++|+++
T Consensus 68 ~~~l~----------------------~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLG----------------------KYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-----------------------HHHHHHHHHHH
T ss_pred HHHhC----------------------CHHHHHHHHhcC
Confidence 99999 999999999875
No 114
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.62 E-value=7.7e-07 Score=95.53 Aligned_cols=133 Identities=15% Similarity=0.191 Sum_probs=111.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
.+.+++..+..|..+...|+.++|...++++++. |.+++....+|.+ ..|+.+++++.+++.++. +|+++
T Consensus 259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~-----~P~~~-- 328 (398)
T PRK10747 259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQ-----HGDTP-- 328 (398)
T ss_pred HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhh-----CCCCH--
Confidence 3557899999999999999999999999999994 5566666666665 449999999999999975 77765
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHH
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 524 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~ 524 (572)
..+..+|..+.+.+ ++++|.++|+++++ .+|++ ..+..++.++.
T Consensus 329 -----~l~l~lgrl~~~~~----------------------~~~~A~~~le~al~----~~P~~-----~~~~~La~~~~ 372 (398)
T PRK10747 329 -----LLWSTLGQLLMKHG----------------------EWQEASLAFRAALK----QRPDA-----YDYAWLADALD 372 (398)
T ss_pred -----HHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHh----cCCCH-----HHHHHHHHHHH
Confidence 23566899999999 99999999999999 55654 23457999999
Q ss_pred HcCCHHHHHHHHHHHHHhC
Q 008246 525 NVGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 525 ~~g~~eeA~~~l~~aL~l~ 543 (572)
+.|+.++|.++|++++.+-
T Consensus 373 ~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 373 RLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HcCCHHHHHHHHHHHHhhh
Confidence 9999999999999998753
No 115
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.62 E-value=2.7e-06 Score=85.35 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=49.6
Q ss_pred hhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 481 FVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 481 ~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
+....+.+.|...+++|++ .||++. .+-+.+|.++..+|+++.|.+.++++++.||++-.
T Consensus 190 ~~~~~~~d~A~~~l~kAlq----a~~~cv----RAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ 249 (389)
T COG2956 190 ALASSDVDRARELLKKALQ----ADKKCV----RASIILGRVELAKGDYQKAVEALERVLEQNPEYLS 249 (389)
T ss_pred HhhhhhHHHHHHHHHHHHh----hCccce----ehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH
Confidence 3445677888888888888 788765 34467999999999999999999999999999863
No 116
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=5e-07 Score=93.50 Aligned_cols=174 Identities=13% Similarity=0.096 Sum_probs=138.7
Q ss_pred hhhhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q 008246 357 AKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436 (572)
Q Consensus 357 ~~~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~ 436 (572)
.|..++.-|..-.+++++.|..+...|++++|+.+|-+.-.+--+++++++.++.+|....+..+|+++|-+|..+
T Consensus 512 ~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl---- 587 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL---- 587 (840)
T ss_pred HHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc----
Confidence 4567787777778999999999999999999999999988888899999999999999999999999999999986
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHHHhhchh------------hHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCC
Q 008246 437 GHPTEPEAIDLLIVASQWSGVACIRQAAHN------------FFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPE 504 (572)
Q Consensus 437 ~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~------------~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~ 504 (572)
-|+++. .+-.+|..|-+.|.-- |...++.-+.++.-|...+=.++|+.+|+++.- .
T Consensus 588 -ip~dp~-------ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal----i 655 (840)
T KOG2003|consen 588 -IPNDPA-------ILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL----I 655 (840)
T ss_pred -CCCCHH-------HHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh----c
Confidence 577652 2445677777777211 122334444555567777778999999999976 4
Q ss_pred CCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008246 505 EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 550 (572)
Q Consensus 505 dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l 550 (572)
.|+... | .++.+.|+.+.|+|.+|.+.|+..-+.-|.+.+.+
T Consensus 656 qp~~~k-w---qlmiasc~rrsgnyqka~d~yk~~hrkfpedldcl 697 (840)
T KOG2003|consen 656 QPNQSK-W---QLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCL 697 (840)
T ss_pred CccHHH-H---HHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHH
Confidence 554332 2 35789999999999999999999999888865543
No 117
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.59 E-value=9.3e-07 Score=97.17 Aligned_cols=137 Identities=18% Similarity=0.156 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~ 450 (572)
.+...|..+...++.++|.-++.+|-.++|..+..|+..|.++..+|+++||.+.|..|+.+ +|++. .
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l-----dP~hv-------~ 719 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL-----DPDHV-------P 719 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc-----CCCCc-------H
Confidence 34566778888899999999999999999999999999999999999999999999999986 77775 2
Q ss_pred HHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHH
Q 008246 451 ASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNA 530 (572)
Q Consensus 451 a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~e 530 (572)
...-+|.++.+.| ..+..++...+..+++ .||.+. ++|+.+|.++.++|+.+
T Consensus 720 s~~Ala~~lle~G--------------------~~~la~~~~~L~dalr----~dp~n~----eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 720 SMTALAELLLELG--------------------SPRLAEKRSLLSDALR----LDPLNH----EAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHHHHHHHhC--------------------CcchHHHHHHHHHHHh----hCCCCH----HHHHHHHHHHHHccchH
Confidence 3455789999999 1134444559999999 577655 56778999999999999
Q ss_pred HHHHHHHHHHHhCCCCH
Q 008246 531 EAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 531 eA~~~l~~aL~l~P~~~ 547 (572)
+|.++|..++++++...
T Consensus 772 ~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 772 QAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHHhhccCCC
Confidence 99999999999997754
No 118
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=7.6e-07 Score=92.10 Aligned_cols=119 Identities=17% Similarity=0.164 Sum_probs=91.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh----HHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhh
Q 008246 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID----LLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSF 481 (572)
Q Consensus 406 ~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~----~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~ 481 (572)
.-.-|+.|++.|+|..|...|++|+..+ ....+.+.+... .....+.+++.++.+++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l-~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~------------------ 271 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFL-EYRRSFDEEEQKKAEALKLACHLNLAACYLKLK------------------ 271 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHh-hccccCCHHHHHHHHHHHHHHhhHHHHHHHhhh------------------
Confidence 3456888999999999999999998753 112222221111 11225777888888888
Q ss_pred hhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 482 VSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 482 ~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
+|.+|+....++++ .+|+|. .+++..|.++..+|+++.|+..|+++++++|+++.+..++.+
T Consensus 272 ----~~~~Ai~~c~kvLe----~~~~N~----KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 272 ----EYKEAIESCNKVLE----LDPNNV----KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIK 333 (397)
T ss_pred ----hHHHHHHHHHHHHh----cCCCch----hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99999999999999 466554 577779999999999999999999999999999987776666
No 119
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.58 E-value=1.1e-06 Score=77.75 Aligned_cols=61 Identities=33% Similarity=0.351 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~---~~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
.+|+.|..+-..|+.++|+.+|+++++...+. .++++.+|..+...|++++|+..+++++.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666666666654333 45556666666666666666666666554
No 120
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.56 E-value=4e-07 Score=71.15 Aligned_cols=55 Identities=25% Similarity=0.408 Sum_probs=47.5
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008246 485 EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 485 g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~ 547 (572)
|++++|++.|+++++ .+|.+. +++..+|.++..+|++++|+++|+++++.+|++.
T Consensus 11 g~~~~A~~~~~~~l~----~~P~~~----~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 11 GDYDEAIAAFEQALK----QDPDNP----EAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp THHHHHHHHHHHHHC----CSTTHH----HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred CCHHHHHHHHHHHHH----HCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 399999999999999 566543 6778899999999999999999999999999863
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.54 E-value=6.9e-07 Score=102.49 Aligned_cols=142 Identities=16% Similarity=0.080 Sum_probs=113.4
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 363 SVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 363 ~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
..+|.+.+++..++..+...|++++|++.++.+++.+|+...+++.+|.++.+.+++++|.-. +++.. .+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-----~~~~~ 97 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-----FSQNL 97 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-----ccccc
Confidence 445566788999999999999999999999999999999999999999999999999999888 77764 22211
Q ss_pred hhhh-------------HHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchh
Q 008246 443 EAID-------------LLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSK 509 (572)
Q Consensus 443 ~~~~-------------~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~ 509 (572)
... ....|++.+|.||.+.| ++++|.+.|+++++ .||.+.
T Consensus 98 -~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g----------------------~~~ka~~~yer~L~----~D~~n~ 150 (906)
T PRK14720 98 -KWAIVEHICDKILLYGENKLALRTLAEAYAKLN----------------------ENKKLKGVWERLVK----ADRDNP 150 (906)
T ss_pred -chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcC----------------------ChHHHHHHHHHHHh----cCcccH
Confidence 000 01124555555555555 99999999999999 455443
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008246 510 AHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 510 ~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~ 543 (572)
.++.++|..|... +.++|++++++|++..
T Consensus 151 ----~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 151 ----EIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred ----HHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 6788999999999 9999999999998874
No 122
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.53 E-value=2.6e-06 Score=91.76 Aligned_cols=135 Identities=14% Similarity=0.123 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~ 449 (572)
......|......|++++|++.+.++.+..|+....+...|.++.++|++++|.++|+++.+. .|++. .
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-----~p~~~----l-- 153 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL-----AGNDN----I-- 153 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCcCc----h--
Confidence 456888999999999999999999999999999999999999999999999999999999874 34331 0
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCH
Q 008246 450 VASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRN 529 (572)
Q Consensus 450 ~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~ 529 (572)
......+..+...| ++++|.+.+++..+ .+|++. .++..++.++.+.|++
T Consensus 154 ~~~~~~a~l~l~~~----------------------~~~~Al~~l~~l~~----~~P~~~----~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 154 LVEIARTRILLAQN----------------------ELHAARHGVDKLLE----MAPRHK----EVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHH----hCCCCH----HHHHHHHHHHHHHhhH
Confidence 11222466667777 99999999999999 445443 4667899999999999
Q ss_pred HHHHHHHHHHHHhCCC
Q 008246 530 AEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 530 eeA~~~l~~aL~l~P~ 545 (572)
++|.+.+++.++....
T Consensus 204 ~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 204 QALDDIIDNMAKAGLF 219 (409)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999987543
No 123
>PRK15331 chaperone protein SicA; Provisional
Probab=98.50 E-value=1.2e-06 Score=80.81 Aligned_cols=98 Identities=11% Similarity=0.094 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~ 447 (572)
.-+..+..|..++++|++++|+..|+-....||.+++-|+.||-++..+|+|++|++.|..|..+ +++++ .
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-----~~~dp-~--- 106 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-----LKNDY-R--- 106 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccCCC-C---
Confidence 45678999999999999999999999999999999999999999999999999999999999875 55554 2
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 448 LIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 448 ~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
..+..|.|+...| +.++|+.+|+.+++
T Consensus 107 ---p~f~agqC~l~l~----------------------~~~~A~~~f~~a~~ 133 (165)
T PRK15331 107 ---PVFFTGQCQLLMR----------------------KAAKARQCFELVNE 133 (165)
T ss_pred ---ccchHHHHHHHhC----------------------CHHHHHHHHHHHHh
Confidence 2467899999999 99999999999998
No 124
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.49 E-value=5.2e-07 Score=71.27 Aligned_cols=64 Identities=23% Similarity=0.262 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcC-CH
Q 008246 451 ASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG-RN 529 (572)
Q Consensus 451 a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g-~~ 529 (572)
.+..+|.++...| ++++|+..|+++++ .+|++. .++.++|.++..+| ++
T Consensus 5 ~~~~~g~~~~~~~----------------------~~~~A~~~~~~ai~----~~p~~~----~~~~~~g~~~~~~~~~~ 54 (69)
T PF13414_consen 5 AWYNLGQIYFQQG----------------------DYEEAIEYFEKAIE----LDPNNA----EAYYNLGLAYMKLGKDY 54 (69)
T ss_dssp HHHHHHHHHHHTT----------------------HHHHHHHHHHHHHH----HSTTHH----HHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHcC----------------------CHHHHHHHHHHHHH----cCCCCH----HHHHHHHHHHHHhCccH
Confidence 5677888888888 99999999999999 566554 57778999999999 79
Q ss_pred HHHHHHHHHHHHhCC
Q 008246 530 AEAEKYLRLAAAHNP 544 (572)
Q Consensus 530 eeA~~~l~~aL~l~P 544 (572)
++|++.++++++++|
T Consensus 55 ~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 55 EEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCc
Confidence 999999999999998
No 125
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.49 E-value=2.1e-06 Score=75.87 Aligned_cols=105 Identities=25% Similarity=0.171 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhh
Q 008246 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFV 482 (572)
Q Consensus 403 ~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~ 482 (572)
+++++.+|.++...|+.++|+.+|++|++. .... +...+++..+|..+..+|
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~----~~~~~a~i~lastlr~LG------------------- 52 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAA-----GLSG----ADRRRALIQLASTLRNLG------------------- 52 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCc----hHHHHHHHHHHHHHHHcC-------------------
Confidence 368999999999999999999999999973 2221 123457888999999999
Q ss_pred hhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008246 483 SQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 483 ~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~ 543 (572)
++++|+..+++++. ..|+++.+. .....++.++...|+.+||.+.+-.++...
T Consensus 53 ---~~deA~~~L~~~~~-~~p~~~~~~----~l~~f~Al~L~~~gr~~eAl~~~l~~la~~ 105 (120)
T PF12688_consen 53 ---RYDEALALLEEALE-EFPDDELNA----ALRVFLALALYNLGRPKEALEWLLEALAET 105 (120)
T ss_pred ---CHHHHHHHHHHHHH-HCCCccccH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999999999998 334433232 344668999999999999999999888744
No 126
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.3e-06 Score=88.15 Aligned_cols=162 Identities=18% Similarity=0.112 Sum_probs=124.8
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 363 SVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 363 ~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
.++.-+.+.++.-+..++..+++..|+.+-+++++.||++.++++..|.++...|+.++|+-.|+.|+.+ .|.+.
T Consensus 294 ~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-----ap~rL 368 (564)
T KOG1174|consen 294 AKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML-----APYRL 368 (564)
T ss_pred hhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc-----chhhH
Confidence 3344456677888888999999999999999999999999999999999999999999999999999975 34332
Q ss_pred hhhhHHHHHHHHHHHHHHHhhchhhHHHH-------HhhhhhHhhhh---------hhccHHHHHHHHHHHhcCCCCCCC
Q 008246 443 EAIDLLIVASQWSGVACIRQAAHNFFELV-------QQGQLKLLSFV---------SQEKWEEGIAHLERIGNLKEPEEP 506 (572)
Q Consensus 443 ~~~~~~~~a~~~lG~~~~~~g~~~~~~a~-------~~~~~~~~~~~---------~~g~~~eAi~~l~kal~l~~p~dp 506 (572)
+.|.++-.+|...| .+.|+. ......++++- .-.--++|.+.++++++ .+|
T Consensus 369 -------~~Y~GL~hsYLA~~--~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~----~~P 435 (564)
T KOG1174|consen 369 -------EIYRGLFHSYLAQK--RFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK----INP 435 (564)
T ss_pred -------HHHHHHHHHHHhhc--hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc----cCC
Confidence 34555666666666 333332 22222222221 11224899999999999 556
Q ss_pred chhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 507 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 507 ~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
. |..+.+.+|..+...|+++++++.+++.|...|+.
T Consensus 436 ~----Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~ 471 (564)
T KOG1174|consen 436 I----YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV 471 (564)
T ss_pred c----cHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc
Confidence 4 66788889999999999999999999999999985
No 127
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.47 E-value=2.5e-06 Score=84.45 Aligned_cols=62 Identities=19% Similarity=0.303 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~---~~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
+..|+.|..++..|+|++|+..|+..++..|++ ++|+|-||.+++.+|++++|...|.++++
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 335555665655666666666666666666555 34445555555555555555555444443
No 128
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.47 E-value=1.6e-06 Score=85.93 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhh---------
Q 008246 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQL--------- 476 (572)
Q Consensus 406 ~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~--------- 476 (572)
.|..|.-++..|+|++|+..|..-+.. .|+.. ..+ .++||||.+++.+| ++.++...+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~-~~~---nA~yWLGe~~y~qg--~y~~Aa~~f~~~~k~~P~s~ 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNST-YTP---NAYYWLGESLYAQG--DYEDAAYIFARVVKDYPKSP 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCc-ccc---hhHHHHHHHHHhcc--cchHHHHHHHHHHHhCCCCC
Confidence 666667777777788888888777753 66664 222 25777888887777 33333222111
Q ss_pred --------hHhhhhhhccHHHHHHHHHHHhcCCCCCCCch
Q 008246 477 --------KLLSFVSQEKWEEGIAHLERIGNLKEPEEPKS 508 (572)
Q Consensus 477 --------~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~ 508 (572)
.+.+....|+.++|...|+++++ +.|+.
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k----~YP~t 248 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIK----RYPGT 248 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHH----HCCCC
Confidence 23345566777777777777777 55544
No 129
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.45 E-value=3.7e-06 Score=90.91 Aligned_cols=178 Identities=15% Similarity=0.084 Sum_probs=102.1
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008246 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P 439 (572)
.+++..|.+-..+...+..--.-|..++-+.++++|+..-|.....|...+.-+...||..+|...+.+|.+. +|
T Consensus 541 ~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~-----~p 615 (913)
T KOG0495|consen 541 HALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA-----NP 615 (913)
T ss_pred HHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh-----CC
Confidence 4455555544444444444444455555555555555555555555555555555555555555555555542 33
Q ss_pred CChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhh-------------hhHhhhhhhccHHHHHHHHHHHhcCCCCCCC
Q 008246 440 TEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQ-------------LKLLSFVSQEKWEEGIAHLERIGNLKEPEEP 506 (572)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~-------------~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp 506 (572)
++. + .+++.+...-...++.++-.+.. ..+.....+++.++|++.++++++ ..|
T Consensus 616 nse-e--------iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk----~fp 682 (913)
T KOG0495|consen 616 NSE-E--------IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK----SFP 682 (913)
T ss_pred CcH-H--------HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH----hCC
Confidence 332 1 11111111111001111100000 001111234589999999999999 555
Q ss_pred chhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccccchH
Q 008246 507 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEE 559 (572)
Q Consensus 507 ~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~~~~~ 559 (572)
. +...++++|.++.++++.+.|.+.|...++.-|+...++-.+.+.+|.
T Consensus 683 ~----f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 683 D----FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred c----hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 3 456778899999999999999999999999999999888888884333
No 130
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.45 E-value=1.4e-06 Score=79.82 Aligned_cols=95 Identities=21% Similarity=0.252 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~---~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~ 445 (572)
..+.+.+|..+...|++++|+..|+++++..|+. ..+++.||.++...|++++|+..+++... .
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~-------------~ 114 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD-------------E 114 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC-------------c
Confidence 5678899999999999999999999999988766 56889999999999999999999966321 1
Q ss_pred hHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHh
Q 008246 446 DLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIG 498 (572)
Q Consensus 446 ~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal 498 (572)
.....++..+|.++...| ++++|+..|++++
T Consensus 115 ~~~~~~~~~~Gdi~~~~g----------------------~~~~A~~~y~~Al 145 (145)
T PF09976_consen 115 AFKALAAELLGDIYLAQG----------------------DYDEARAAYQKAL 145 (145)
T ss_pred chHHHHHHHHHHHHHHCC----------------------CHHHHHHHHHHhC
Confidence 122345677899999888 9999999999875
No 131
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.45 E-value=5.8e-07 Score=94.92 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=67.2
Q ss_pred cccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 362 ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINA---LILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 362 i~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a---~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
-+.+|.++++++++|..+...|++++|+.+|++||+++|+++++ |+++|.+|..+|++++|+++|++|+++
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34788899999999999999999999999999999999999965 999999999999999999999999973
No 132
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2e-06 Score=91.42 Aligned_cols=136 Identities=15% Similarity=0.143 Sum_probs=107.6
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008246 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (572)
Q Consensus 361 ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~ 440 (572)
.--++|.-.+.....|..++..|+|..|+..|.+||..||+|+..+-+.|.+|...|++.+|+...++++++ +|+
T Consensus 350 ~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-----~p~ 424 (539)
T KOG0548|consen 350 KAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-----DPN 424 (539)
T ss_pred HHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----Cch
Confidence 334444447777888999999999999999999999999999999999999999999999999999999985 443
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHH
Q 008246 441 EPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA 520 (572)
Q Consensus 441 ~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg 520 (572)
. ..+|..-|.++.... +|++|++.|+++++ .||.+.. +.-.+.
T Consensus 425 ~-------~kgy~RKg~al~~mk----------------------~ydkAleay~eale----~dp~~~e----~~~~~~ 467 (539)
T KOG0548|consen 425 F-------IKAYLRKGAALRAMK----------------------EYDKALEAYQEALE----LDPSNAE----AIDGYR 467 (539)
T ss_pred H-------HHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHh----cCchhHH----HHHHHH
Confidence 3 356777788888888 99999999999999 5776542 333456
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 008246 521 SALCNVGRNAEAEKYLRL 538 (572)
Q Consensus 521 ~~l~~~g~~eeA~~~l~~ 538 (572)
.|+..+...+...+.+++
T Consensus 468 rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 468 RCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHhhcCCCHHHHHHh
Confidence 666654334444455555
No 133
>PRK11906 transcriptional regulator; Provisional
Probab=98.42 E-value=3.9e-06 Score=88.89 Aligned_cols=142 Identities=12% Similarity=0.062 Sum_probs=111.4
Q ss_pred hhcc---ccCCCCHHHHHHHHHHHHhc---------CCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008246 359 QLKI---SVENLTPKELIALSVKFLSK---------GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYL 426 (572)
Q Consensus 359 ~~ai---~~~~~~~~~~~~lA~~~~~~---------g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~ 426 (572)
.+++ +.||..+.+|..+|.++... .+..+|.+..++|+++||+|+.++..+|.++...|+++.|...|
T Consensus 282 ~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f 361 (458)
T PRK11906 282 DRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILF 361 (458)
T ss_pred HHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHH
Confidence 3577 88888999999999988653 23346889999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCC
Q 008246 427 ECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEP 506 (572)
Q Consensus 427 ~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp 506 (572)
+||+.+ +|+.. .+++..|..+...| +.++|.++++++++ .+|
T Consensus 362 ~rA~~L-----~Pn~A-------~~~~~~~~~~~~~G----------------------~~~~a~~~i~~alr----LsP 403 (458)
T PRK11906 362 EQAKIH-----STDIA-------SLYYYRALVHFHNE----------------------KIEEARICIDKSLQ----LEP 403 (458)
T ss_pred HHHhhc-----CCccH-------HHHHHHHHHHHHcC----------------------CHHHHHHHHHHHhc----cCc
Confidence 999986 77664 56888999999999 99999999999999 466
Q ss_pred chhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 507 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 507 ~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~ 541 (572)
..... ....+-.-.+-....++|++.|-+--+
T Consensus 404 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 404 RRRKA---VVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred hhhHH---HHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 43221 112222212335578888888765433
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.42 E-value=5.2e-06 Score=95.42 Aligned_cols=171 Identities=10% Similarity=0.033 Sum_probs=119.5
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH-------------------HHHHHHHHHHHHcCCHHH
Q 008246 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-------------------NALILMGQTQLQKGLLEE 421 (572)
Q Consensus 361 ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~-------------------~a~~~LG~l~~~~g~~~e 421 (572)
++...|.....++.+|..+.+.+++++|... +++..-+.+. .|++.||.+|...|+.++
T Consensus 57 ~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~k 134 (906)
T PRK14720 57 HLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKK 134 (906)
T ss_pred HHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHH
Confidence 4555566666777777777777766665444 5555555554 888888999888999999
Q ss_pred HHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCC
Q 008246 422 AVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLK 501 (572)
Q Consensus 422 A~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~ 501 (572)
|.+.|+++++. +|+++ .+..++|..+... ++.+|.+........+...++|.++.+..++.+.
T Consensus 135 a~~~yer~L~~-----D~~n~-------~aLNn~AY~~ae~---dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~-- 197 (906)
T PRK14720 135 LKGVWERLVKA-----DRDNP-------EIVKKLATSYEEE---DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVH-- 197 (906)
T ss_pred HHHHHHHHHhc-----CcccH-------HHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHh--
Confidence 99999888875 55554 3455566666555 5666666665556667777789999999999888
Q ss_pred CCCCCchhhhhh----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 008246 502 EPEEPKSKAHYY----------------DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 552 (572)
Q Consensus 502 ~p~dp~~~~~~~----------------~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~ 552 (572)
.+|.+...+. ..+.-+=..|.+.+++++++.+++.+|+.+|++..++..
T Consensus 198 --~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~ 262 (906)
T PRK14720 198 --YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREE 262 (906)
T ss_pred --cCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHH
Confidence 3444332211 112223378889999999999999999999998765443
No 135
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.42 E-value=8e-07 Score=99.67 Aligned_cols=146 Identities=15% Similarity=0.129 Sum_probs=107.6
Q ss_pred hcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHH
Q 008246 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACI 460 (572)
Q Consensus 381 ~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~ 460 (572)
.+.+...|...|-+++++|+..+.++-.||++|...-|...|.+||++|.++ ++++. .+....+..+.
T Consensus 470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL-----Datda-------eaaaa~adtya 537 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL-----DATDA-------EAAAASADTYA 537 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----Cchhh-------hhHHHHHHHhh
Confidence 3455777888888888888888888888888888888888888888888875 54443 23344455555
Q ss_pred HhhchhhHHHHHhh-----hh---------hHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHc
Q 008246 461 RQAAHNFFELVQQG-----QL---------KLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 526 (572)
Q Consensus 461 ~~g~~~~~~a~~~~-----~~---------~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~ 526 (572)
+...++....+.+. .. ++--+.+.++..+|+.+|+.+++ .||++ ++.|..+|.+|...
T Consensus 538 e~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR----~dPkD----~n~W~gLGeAY~~s 609 (1238)
T KOG1127|consen 538 EESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR----TDPKD----YNLWLGLGEAYPES 609 (1238)
T ss_pred ccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhc----CCchh----HHHHHHHHHHHHhc
Confidence 55544332222111 00 11125567799999999999999 67754 46788899999999
Q ss_pred CCHHHHHHHHHHHHHhCCCC
Q 008246 527 GRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 527 g~~eeA~~~l~~aL~l~P~~ 546 (572)
|++.-|.+.|.+|..++|..
T Consensus 610 Gry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 610 GRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred CceehHHHhhhhhHhcCcHh
Confidence 99999999999999999984
No 136
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.41 E-value=3.4e-06 Score=79.54 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=89.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhH
Q 008246 399 EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKL 478 (572)
Q Consensus 399 dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~ 478 (572)
++..+.+++.+|..+...|++++|+.+|+++++. .|+.. ....++..+|.++.+.|
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~~----~~~~~~~~la~~~~~~g--------------- 86 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKL-----EEDPN----DRSYILYNMGIIYASNG--------------- 86 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----hhccc----hHHHHHHHHHHHHHHcC---------------
Confidence 3466778999999999999999999999999974 33321 11246788999999999
Q ss_pred hhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCC
Q 008246 479 LSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR--------------NAEAEKYLRLAAAHNP 544 (572)
Q Consensus 479 ~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~--------------~eeA~~~l~~aL~l~P 544 (572)
++++|+.+++++++ .+|.+. .++..+|.++...|+ +++|.++++++++.+|
T Consensus 87 -------~~~~A~~~~~~al~----~~p~~~----~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 87 -------EHDKALEYYHQALE----LNPKQP----SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred -------CHHHHHHHHHHHHH----hCcccH----HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 99999999999999 455433 455678999999888 6788999999999999
Q ss_pred CCHH
Q 008246 545 QYNE 548 (572)
Q Consensus 545 ~~~~ 548 (572)
++..
T Consensus 152 ~~~~ 155 (172)
T PRK02603 152 NNYI 155 (172)
T ss_pred hhHH
Confidence 8753
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=1.1e-05 Score=85.09 Aligned_cols=130 Identities=22% Similarity=0.192 Sum_probs=105.7
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHH
Q 008246 391 LLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFEL 470 (572)
Q Consensus 391 ~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a 470 (572)
.-.++...+|....++|..+..+++.|++++|+..++..+.. .|+++ ..+...+.++.+.|
T Consensus 294 ~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-----~P~N~-------~~~~~~~~i~~~~n------- 354 (484)
T COG4783 294 ADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-----QPDNP-------YYLELAGDILLEAN------- 354 (484)
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh-----CCCCH-------HHHHHHHHHHHHcC-------
Confidence 333444455999999999999999999999999999987763 66654 12334578888888
Q ss_pred HHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008246 471 VQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 550 (572)
Q Consensus 471 ~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l 550 (572)
+.++|++.+++++. .+|... -..+++|.+|.+.|++.||+..+++.+..+|++...+
T Consensus 355 ---------------k~~~A~e~~~kal~----l~P~~~----~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w 411 (484)
T COG4783 355 ---------------KAKEAIERLKKALA----LDPNSP----LLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGW 411 (484)
T ss_pred ---------------ChHHHHHHHHHHHh----cCCCcc----HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHH
Confidence 99999999999999 566542 3567899999999999999999999999999999988
Q ss_pred HhccccchHHhh
Q 008246 551 EQLENNDEEFVS 562 (572)
Q Consensus 551 ~~l~~~~~~~~~ 562 (572)
..+.+..++..+
T Consensus 412 ~~LAqay~~~g~ 423 (484)
T COG4783 412 DLLAQAYAELGN 423 (484)
T ss_pred HHHHHHHHHhCc
Confidence 888876665444
No 138
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.37 E-value=8.6e-06 Score=73.50 Aligned_cols=123 Identities=23% Similarity=0.270 Sum_probs=98.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~---~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
...+..++..|...++.|++++|++.|+......|.. ..+.+.+|.+|+..|++++|+..+++-+++ +|+++
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~hp 81 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPTHP 81 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCC
Confidence 4568899999999999999999999999999999876 589999999999999999999999999996 99987
Q ss_pred hhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCch
Q 008246 443 EAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKS 508 (572)
Q Consensus 443 ~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~ 508 (572)
..+ .+++..|.++.++..+.+.... ..-..++...+|...|++.++ ..|++
T Consensus 82 -~vd---Ya~Y~~gL~~~~~~~~~~~~~~-------~~drD~~~~~~A~~~f~~lv~----~yP~S 132 (142)
T PF13512_consen 82 -NVD---YAYYMRGLSYYEQDEGSLQSFF-------RSDRDPTPARQAFRDFEQLVR----RYPNS 132 (142)
T ss_pred -Ccc---HHHHHHHHHHHHHhhhHHhhhc-------ccccCcHHHHHHHHHHHHHHH----HCcCC
Confidence 444 3688889999888722211111 111223357899999999999 66654
No 139
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.36 E-value=2.1e-06 Score=70.83 Aligned_cols=84 Identities=30% Similarity=0.350 Sum_probs=64.6
Q ss_pred HcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHH
Q 008246 415 QKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHL 494 (572)
Q Consensus 415 ~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l 494 (572)
.+|++++|+.+|+++++. +|++. ....++++|.++.+.| ++++|+..+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~-----~~~~~-----~~~~~~~la~~~~~~~----------------------~y~~A~~~~ 48 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLEL-----DPTNP-----NSAYLYNLAQCYFQQG----------------------KYEEAIELL 48 (84)
T ss_dssp HTT-HHHHHHHHHHHHHH-----HCGTH-----HHHHHHHHHHHHHHTT----------------------HHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHH-----CCCCh-----hHHHHHHHHHHHHHCC----------------------CHHHHHHHH
Confidence 478999999999999985 33321 2235677899999999 999999999
Q ss_pred HHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008246 495 ERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 539 (572)
Q Consensus 495 ~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~a 539 (572)
++ .+ .++.+ ...+..+|.++.++|++++|+++|+++
T Consensus 49 ~~-~~----~~~~~----~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 49 QK-LK----LDPSN----PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HC-HT----HHHCH----HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HH-hC----CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 98 54 33333 345567899999999999999999875
No 140
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=1.7e-06 Score=94.77 Aligned_cols=145 Identities=17% Similarity=0.100 Sum_probs=118.7
Q ss_pred hhhccccCC-CCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q 008246 358 KQLKISVEN-LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436 (572)
Q Consensus 358 ~~~ai~~~~-~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~ 436 (572)
|+++.+.-+ .+..+...+|....++++|+++.++++..++++|-....|+.+|.++.+.++++.|.++|.+.+.+
T Consensus 473 yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL---- 548 (777)
T KOG1128|consen 473 YEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL---- 548 (777)
T ss_pred HHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc----
Confidence 345554433 234455666777778899999999999999999999999999999999999999999999999985
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHH
Q 008246 437 GHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL 516 (572)
Q Consensus 437 ~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al 516 (572)
+|++. .+|.++..+|.+.| +-.+|...+++|++.+ ..++ ..|
T Consensus 549 -~Pd~~-------eaWnNls~ayi~~~----------------------~k~ra~~~l~EAlKcn-~~~w-------~iW 590 (777)
T KOG1128|consen 549 -EPDNA-------EAWNNLSTAYIRLK----------------------KKKRAFRKLKEALKCN-YQHW-------QIW 590 (777)
T ss_pred -CCCch-------hhhhhhhHHHHHHh----------------------hhHHHHHHHHHHhhcC-CCCC-------eee
Confidence 66653 57899999999999 9999999999999953 2222 345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008246 517 VVLASALCNVGRNAEAEKYLRLAAAHNP 544 (572)
Q Consensus 517 ~~Lg~~l~~~g~~eeA~~~l~~aL~l~P 544 (572)
-|.-.+..+.|.+++|.+.|.+.+...-
T Consensus 591 ENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 591 ENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred echhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 5667788899999999999999887653
No 141
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.33 E-value=1.2e-05 Score=89.85 Aligned_cols=144 Identities=16% Similarity=0.144 Sum_probs=117.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008246 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (572)
Q Consensus 361 ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~ 440 (572)
.|..+|.++.+|+.+|.+|.++|+.+++....-.|-.++|++.+-|..+|....++|++++|.-||.||++. +|.
T Consensus 165 vIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~-----~p~ 239 (895)
T KOG2076|consen 165 VIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQA-----NPS 239 (895)
T ss_pred HHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc-----CCc
Confidence 677788899999999999999999999999999999999999999999999999999999999999999985 555
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHH
Q 008246 441 EPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA 520 (572)
Q Consensus 441 ~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg 520 (572)
+- ...+.....+.+.| +...|.+.|.+++++.+| .+.....+.....+
T Consensus 240 n~-------~~~~ers~L~~~~G----------------------~~~~Am~~f~~l~~~~p~---~d~er~~d~i~~~~ 287 (895)
T KOG2076|consen 240 NW-------ELIYERSSLYQKTG----------------------DLKRAMETFLQLLQLDPP---VDIERIEDLIRRVA 287 (895)
T ss_pred ch-------HHHHHHHHHHHHhC----------------------hHHHHHHHHHHHHhhCCc---hhHHHHHHHHHHHH
Confidence 42 23455677888888 889999999999985322 22222222233446
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 008246 521 SALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 521 ~~l~~~g~~eeA~~~l~~aL~ 541 (572)
..+...++.+.|.+.++.++.
T Consensus 288 ~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 288 HYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 777777777888888888887
No 142
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.32 E-value=1.4e-06 Score=69.58 Aligned_cols=62 Identities=31% Similarity=0.457 Sum_probs=57.8
Q ss_pred HHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 376 SVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 376 A~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
...+.+.+++++|+++++++++.+|+++.+|..+|.++...|++++|.+.|+++++. .|+++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~-----~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL-----SPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCcH
Confidence 567889999999999999999999999999999999999999999999999999986 66654
No 143
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.31 E-value=9.2e-06 Score=83.05 Aligned_cols=144 Identities=19% Similarity=0.070 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCC-----CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEP-----DN-INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP-----~~-~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
.+.+...|..+...|++++|..+|.++.+..- .+ +.++...|.+|... ++++|+++|++|+++....|+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~---- 109 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR---- 109 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc----
Confidence 35567778888889999999999999976542 22 45666666776555 999999999999985211111
Q ss_pred hhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhh-ccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHH
Q 008246 443 EAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQ-EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAS 521 (572)
Q Consensus 443 ~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~-g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~ 521 (572)
.......+..+|.++ ... |++++|+++|++|+++-...+ ......+.+..+|.
T Consensus 110 --~~~aA~~~~~lA~~y----------------------e~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 110 --FSQAAKCLKELAEIY----------------------EEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAAD 163 (282)
T ss_dssp --HHHHHHHHHHHHHHH----------------------CCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHH----------------------HHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHH
Confidence 111122333344444 444 599999999999997432222 22233456778999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC
Q 008246 522 ALCNVGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 522 ~l~~~g~~eeA~~~l~~aL~l~ 543 (572)
++...|+|++|++.|++.....
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHhCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988753
No 144
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.30 E-value=1.1e-05 Score=82.63 Aligned_cols=150 Identities=19% Similarity=0.192 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG--LLEEAVEYLECAISKLFLAGHPTEPEAI 445 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g--~~~eA~~~~~rAl~~l~~~~~P~~~~~~ 445 (572)
+.+.......+++..++.|.|.+.++++-+.|.++.-.....|++.+..| ++.+|...|++..+. .+..
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-----~~~t---- 200 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-----FGST---- 200 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-----S--S----
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-----cCCC----
Confidence 35556666777788888888888888888888877777777777777766 478888888875431 2221
Q ss_pred hHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHH
Q 008246 446 DLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN 525 (572)
Q Consensus 446 ~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~ 525 (572)
......++.++..+| +|+||.+.++++++ .+|++. +++.+++.+...
T Consensus 201 ---~~~lng~A~~~l~~~----------------------~~~eAe~~L~~al~----~~~~~~----d~LaNliv~~~~ 247 (290)
T PF04733_consen 201 ---PKLLNGLAVCHLQLG----------------------HYEEAEELLEEALE----KDPNDP----DTLANLIVCSLH 247 (290)
T ss_dssp ---HHHHHHHHHHHHHCT-----------------------HHHHHHHHHHHCC----C-CCHH----HHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhC----------------------CHHHHHHHHHHHHH----hccCCH----HHHHHHHHHHHH
Confidence 123566777777777 99999999999998 566543 677889999999
Q ss_pred cCCH-HHHHHHHHHHHHhCCCCHHHHHhccccchHH
Q 008246 526 VGRN-AEAEKYLRLAAAHNPQYNELLEQLENNDEEF 560 (572)
Q Consensus 526 ~g~~-eeA~~~l~~aL~l~P~~~~~l~~l~~~~~~~ 560 (572)
.|+. +++.+++.+.-..+|++......-++ +.+|
T Consensus 248 ~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~-~~~F 282 (290)
T PF04733_consen 248 LGKPTEAAERYLSQLKQSNPNHPLVKDLAEK-EAEF 282 (290)
T ss_dssp TT-TCHHHHHHHHHCHHHTTTSHHHHHHHHH-HHHH
T ss_pred hCCChhHHHHHHHHHHHhCCCChHHHHHHHH-HHHH
Confidence 9998 67888999988899999866665555 6665
No 145
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.30 E-value=7.5e-06 Score=83.69 Aligned_cols=146 Identities=17% Similarity=0.153 Sum_probs=99.3
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHhhC--CCC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008246 373 IALSVKFLSKGDKERPIPLLQLALNKE--PDN----INALILMGQTQLQK-GLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL~~d--P~~----~~a~~~LG~l~~~~-g~~~eA~~~~~rAl~~l~~~~~P~~~~~~ 445 (572)
+..+...+.++++++|+.+|++|+++. -++ +.++..+|.+|... |++++|+++|++|++.....+ ..
T Consensus 78 ~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~------~~ 151 (282)
T PF14938_consen 78 YEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG------SP 151 (282)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-------H
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC------Ch
Confidence 344555556669999999999999873 222 67889999999999 999999999999998520111 11
Q ss_pred hHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHH
Q 008246 446 DLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN 525 (572)
Q Consensus 446 ~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~ 525 (572)
......+..+|.++.+.| +|++|++.|+++.... -.++......-+.++..+.++..
T Consensus 152 ~~a~~~~~~~A~l~~~l~----------------------~y~~A~~~~e~~~~~~-l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 152 HSAAECLLKAADLYARLG----------------------RYEEAIEIYEEVAKKC-LENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-----------------------HHHHHHHHHHHHHTC-CCHCTTGHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhC----------------------CHHHHHHHHHHHHHHh-hcccccchhHHHHHHHHHHHHHH
Confidence 111234455666677777 9999999999998721 11121111111234567888999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH
Q 008246 526 VGRNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 526 ~g~~eeA~~~l~~aL~l~P~~~ 547 (572)
.|+...|...+++....+|++.
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTTST
T ss_pred cCCHHHHHHHHHHHHhhCCCCC
Confidence 9999999999999999999864
No 146
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.29 E-value=1.6e-06 Score=68.15 Aligned_cols=54 Identities=39% Similarity=0.607 Sum_probs=50.4
Q ss_pred HHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 379 ~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
++..|++++|++.|+++++.+|++.++++.+|.+|.+.|++++|.+.+++++..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999974
No 147
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=2.2e-05 Score=84.34 Aligned_cols=168 Identities=17% Similarity=0.106 Sum_probs=112.7
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHH
Q 008246 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~ 452 (572)
++.|.++++.++.|+|+..++ ..|+.+.......|+++++.|+|++|.+.|+..+. +..+ +.+...++-
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k------n~~d--d~d~~~r~n 151 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK------NNSD--DQDEERRAN 151 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh------cCCc--hHHHHHHHH
Confidence 899999999999999999999 67788888999999999999999999999998875 2221 112111111
Q ss_pred HHHHHHHHHhhchhhHHH--------HHhhhhhHhhhhhhccHHHHHHHHHHHhc-----CCCCCCCchh---hhhhHHH
Q 008246 453 QWSGVACIRQAAHNFFEL--------VQQGQLKLLSFVSQEKWEEGIAHLERIGN-----LKEPEEPKSK---AHYYDGL 516 (572)
Q Consensus 453 ~~lG~~~~~~g~~~~~~a--------~~~~~~~~~~~~~~g~~~eAi~~l~kal~-----l~~p~dp~~~---~~~~~al 516 (572)
.++.+-...+. ..+. .+..-..+-++...|+|++|++.++++++ +.+ .|-... .......
T Consensus 152 -l~a~~a~l~~~--~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~-~d~~eEeie~el~~Ir 227 (652)
T KOG2376|consen 152 -LLAVAAALQVQ--LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLED-EDTNEEEIEEELNPIR 227 (652)
T ss_pred -HHHHHHhhhHH--HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcc-cccchhhHHHHHHHHH
Confidence 11111111110 0111 11111122346678899999999999932 211 121111 1122345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 517 VVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 517 ~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
+.|+.++..+|+.+||.+.|...++.+|.+...+.-+-+
T Consensus 228 vQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~N 266 (652)
T KOG2376|consen 228 VQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVN 266 (652)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhc
Confidence 779999999999999999999999999988766665555
No 148
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.27 E-value=5.5e-06 Score=83.55 Aligned_cols=93 Identities=19% Similarity=0.073 Sum_probs=59.0
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHH
Q 008246 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~ 452 (572)
-+.|..|+.+|.|++|+.||.+++..+|.|+..+.+.|.+|++.++|..|+.-++.|+.+ .+.+..+|
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL------------d~~Y~KAY 168 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL------------DKLYVKAY 168 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh------------hHHHHHHH
Confidence 345666666777777777777777777777766777777777777777777666666652 22233455
Q ss_pred HHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 453 QWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 453 ~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
-..|.+...+| +..||.+.++.+++
T Consensus 169 SRR~~AR~~Lg----------------------~~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 169 SRRMQARESLG----------------------NNMEAKKDCETVLA 193 (536)
T ss_pred HHHHHHHHHHh----------------------hHHHHHHhHHHHHh
Confidence 55555555555 66666666666666
No 149
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.27 E-value=1.1e-05 Score=87.52 Aligned_cols=163 Identities=15% Similarity=0.078 Sum_probs=113.2
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 363 SVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 363 ~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
+-.|.+++.+...|..+...|+-++|..+.+.+++.|+.+.-.|+.+|.++...++|++|++||+.|+.+ +|++.
T Consensus 35 ~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~-----~~dN~ 109 (700)
T KOG1156|consen 35 KKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI-----EKDNL 109 (700)
T ss_pred HhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc-----CCCcH
Confidence 5667788999999999999999999999999999999999999999999999999999999999999985 55553
Q ss_pred hhhhHHHHHHHHHHHHHHHhhchhh-HH-HHHhhhh----------hHhhhhhhccHHHHHHHHHHHhcCCCCCCCch-h
Q 008246 443 EAIDLLIVASQWSGVACIRQAAHNF-FE-LVQQGQL----------KLLSFVSQEKWEEGIAHLERIGNLKEPEEPKS-K 509 (572)
Q Consensus 443 ~~~~~~~~a~~~lG~~~~~~g~~~~-~~-a~~~~~~----------~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~-~ 509 (572)
..+.-++....+.+..+- .+ ..++-++ .+.+....|++..|...++...+..+ ..|.. .
T Consensus 110 -------qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~-~~~s~~~ 181 (700)
T KOG1156|consen 110 -------QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN-TSPSKED 181 (700)
T ss_pred -------HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCHHH
Confidence 234445555555552220 10 0011111 11234456788888888877776322 11221 1
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008246 510 AHYYDGLVVLASALCNVGRNAEAEKYLRL 538 (572)
Q Consensus 510 ~~~~~al~~Lg~~l~~~g~~eeA~~~l~~ 538 (572)
..+.+..+....++.+.|..++|.+.+..
T Consensus 182 ~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 182 YEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 12334556667777888888887776644
No 150
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.26 E-value=4.8e-06 Score=91.73 Aligned_cols=107 Identities=16% Similarity=0.169 Sum_probs=98.1
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhhhhcC
Q 008246 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVE--YLECAISKLFLAG 437 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~--~~~rAl~~l~~~~ 437 (572)
.+-.+++..+..++..|..+..+|+..+|.+.|..|+.+||+++.....+|.++.+.|+..-|.. .+..|+++
T Consensus 675 Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~----- 749 (799)
T KOG4162|consen 675 EASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL----- 749 (799)
T ss_pred HHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-----
Confidence 34567788888999999999999999999999999999999999999999999999999988888 99999986
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcC
Q 008246 438 HPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNL 500 (572)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l 500 (572)
+|.++ .+|+++|.++..+| +.++|.++|+.+++|
T Consensus 750 dp~n~-------eaW~~LG~v~k~~G----------------------d~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 750 DPLNH-------EAWYYLGEVFKKLG----------------------DSKQAAECFQAALQL 783 (799)
T ss_pred CCCCH-------HHHHHHHHHHHHcc----------------------chHHHHHHHHHHHhh
Confidence 66654 58999999999999 999999999999996
No 151
>PRK15331 chaperone protein SicA; Provisional
Probab=98.24 E-value=1.9e-05 Score=72.84 Aligned_cols=118 Identities=12% Similarity=0.110 Sum_probs=94.4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHH
Q 008246 392 LQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELV 471 (572)
Q Consensus 392 l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~ 471 (572)
++....+.++.-+..+..|.-++..|++++|+..|+-.... +|.+. +-+.++|.++..++
T Consensus 26 lk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-----d~~n~-------~Y~~GLaa~~Q~~k-------- 85 (165)
T PRK15331 26 LKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY-----DFYNP-------DYTMGLAAVCQLKK-------- 85 (165)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcCcH-------HHHHHHHHHHHHHH--------
Confidence 44566678888899999999999999999999999665542 55443 23677899999999
Q ss_pred HhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008246 472 QQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 551 (572)
Q Consensus 472 ~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~ 551 (572)
+|++|+..|..+..+. ++||. ..+..|.|+..+|+.++|+.+|+.++. +|.+..+.+
T Consensus 86 --------------~y~~Ai~~Y~~A~~l~-~~dp~-------p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~ 142 (165)
T PRK15331 86 --------------QFQKACDLYAVAFTLL-KNDYR-------PVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRA 142 (165)
T ss_pred --------------HHHHHHHHHHHHHHcc-cCCCC-------ccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHH
Confidence 9999999999998853 46663 234589999999999999999999998 677765444
Q ss_pred h
Q 008246 552 Q 552 (572)
Q Consensus 552 ~ 552 (572)
.
T Consensus 143 ~ 143 (165)
T PRK15331 143 K 143 (165)
T ss_pred H
Confidence 3
No 152
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.24 E-value=7.6e-05 Score=74.58 Aligned_cols=156 Identities=14% Similarity=0.117 Sum_probs=111.9
Q ss_pred hccccCCCCHH---HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcC---------------C
Q 008246 360 LKISVENLTPK---ELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKG---------------L 418 (572)
Q Consensus 360 ~ai~~~~~~~~---~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~---~~a~~~LG~l~~~~g---------------~ 418 (572)
..+..+|.++. +.+.+|..+.+.|++++|+..+++.++.+|++ +.+++.+|.++...+ |
T Consensus 57 ~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD 136 (243)
T PRK10866 57 ALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRD 136 (243)
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccC
Confidence 34445555544 44899999999999999999999999999988 578899998865544 1
Q ss_pred ---HHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhh-hHhhhhhhccHHHHHHHH
Q 008246 419 ---LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQL-KLLSFVSQEKWEEGIAHL 494 (572)
Q Consensus 419 ---~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~-~~~~~~~~g~~~eAi~~l 494 (572)
..+|.+.|++.++. .|+.. . ...+...+..+..++. ..++ .++-|.+.|+|..|+.-+
T Consensus 137 ~~~~~~A~~~~~~li~~-----yP~S~-y---a~~A~~rl~~l~~~la---------~~e~~ia~~Y~~~~~y~AA~~r~ 198 (243)
T PRK10866 137 PQHARAAFRDFSKLVRG-----YPNSQ-Y---TTDATKRLVFLKDRLA---------KYELSVAEYYTKRGAYVAVVNRV 198 (243)
T ss_pred HHHHHHHHHHHHHHHHH-----CcCCh-h---HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHcCchHHHHHHH
Confidence 35688889898875 77664 1 1223333333333332 1222 234577788999999999
Q ss_pred HHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008246 495 ERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 538 (572)
Q Consensus 495 ~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~ 538 (572)
+.+++ ..|+.. ...+++..++.+|..+|..++|.++...
T Consensus 199 ~~v~~----~Yp~t~-~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 199 EQMLR----DYPDTQ-ATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHH----HCCCCc-hHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999 555543 2447889999999999999999987654
No 153
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.21 E-value=2.1e-05 Score=69.17 Aligned_cols=100 Identities=23% Similarity=0.183 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~ 450 (572)
.+-..|..+.+.|+.+.|++.|.++|.+-|+.+.+|.+.++.+..+|+.++|++-+++|+++ .|. . ....-.
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL---ag~-~----trtacq 116 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL---AGD-Q----TRTACQ 116 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh---cCc-c----chHHHH
Confidence 45567888899999999999999999999999999999999999999999999999999985 222 1 112224
Q ss_pred HHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcC
Q 008246 451 ASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNL 500 (572)
Q Consensus 451 a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l 500 (572)
++...|..|..+| +-++|...|+.+.++
T Consensus 117 a~vQRg~lyRl~g----------------------~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 117 AFVQRGLLYRLLG----------------------NDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHHhC----------------------chHHHHHhHHHHHHh
Confidence 6777788888888 999999999999885
No 154
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.20 E-value=1.9e-05 Score=85.59 Aligned_cols=175 Identities=14% Similarity=0.042 Sum_probs=122.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
...+...++.-+......|+.++|+++++++|+..|+....|..+|+++.+.++.+.|.+.|...+.. -|+..
T Consensus 647 ~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-----cP~~i-- 719 (913)
T KOG0495|consen 647 ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-----CPNSI-- 719 (913)
T ss_pred cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-----CCCCc--
Confidence 34467888999999999999999999999999999999999999999999999999999999988874 55543
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHH------------HhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhh
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELV------------QQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHY 512 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~------------~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~ 512 (572)
..|..++..-.+.|...-++++ .+-...++.=...|+.++|.....+|++ +-|.+...|
T Consensus 720 -----pLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ----ecp~sg~LW 790 (913)
T KOG0495|consen 720 -----PLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ----ECPSSGLLW 790 (913)
T ss_pred -----hHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCccchhH
Confidence 1233344443333311111111 0000111222345666777777777666 334332111
Q ss_pred --------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 513 --------------------------YDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 513 --------------------------~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
...++..|..+....++++|+++|++++..+|++.+.+..+.+
T Consensus 791 aEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fyk 859 (913)
T KOG0495|consen 791 AEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYK 859 (913)
T ss_pred HHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHH
Confidence 1345678888999999999999999999999999987765554
No 155
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=4.4e-05 Score=74.53 Aligned_cols=141 Identities=18% Similarity=0.128 Sum_probs=110.8
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~ 450 (572)
.+-+.....+..|+.+-|..++++....-|++.++-..-|..+...|++++|+++|++.++- +|++. .
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d-----dpt~~-------v 121 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLED-----DPTDT-------V 121 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc-----Ccchh-------H
Confidence 34455667788899999999999999999999999999999999999999999999999862 55542 1
Q ss_pred HHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHH
Q 008246 451 ASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNA 530 (572)
Q Consensus 451 a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~e 530 (572)
.+-..-.+... +|+.-+|++.+...++ ..+.+. ++|..|+.+|...|+++
T Consensus 122 ~~KRKlAilka----------------------~GK~l~aIk~ln~YL~----~F~~D~----EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 122 IRKRKLAILKA----------------------QGKNLEAIKELNEYLD----KFMNDQ----EAWHELAEIYLSEGDFE 171 (289)
T ss_pred HHHHHHHHHHH----------------------cCCcHHHHHHHHHHHH----HhcCcH----HHHHHHHHHHHhHhHHH
Confidence 11111222233 4488899999999888 444433 67778999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHhc
Q 008246 531 EAEKYLRLAAAHNPQYNELLEQL 553 (572)
Q Consensus 531 eA~~~l~~aL~l~P~~~~~l~~l 553 (572)
+|.-+|++.+=.+|.+.-+...+
T Consensus 172 kA~fClEE~ll~~P~n~l~f~rl 194 (289)
T KOG3060|consen 172 KAAFCLEELLLIQPFNPLYFQRL 194 (289)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHH
Confidence 99999999999999876544433
No 156
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=2.6e-05 Score=73.51 Aligned_cols=116 Identities=21% Similarity=0.214 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhh
Q 008246 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQ 484 (572)
Q Consensus 405 a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~ 484 (572)
-+-.=|.-++..|+|++|..-|.+|++. .|...+. .-...|.+.|.++.+++
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~-----cp~~~~e--~rsIly~Nraaa~iKl~--------------------- 148 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALES-----CPSTSTE--ERSILYSNRAAALIKLR--------------------- 148 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHh-----CccccHH--HHHHHHhhhHHHHHHhh---------------------
Confidence 3445588899999999999999999986 4443321 11224666788888888
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccccc
Q 008246 485 EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENND 557 (572)
Q Consensus 485 g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~~~ 557 (572)
+++.|++...++++ .+|. |..++...|.+|.+..++++|++-|++.++.||...++.+.+.+..
T Consensus 149 -k~e~aI~dcsKaie----l~pt----y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 149 -KWESAIEDCSKAIE----LNPT----YEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred -hHHHHHHHHHhhHh----cCch----hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 99999999999999 4664 4567778899999999999999999999999999988777666533
No 157
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.17 E-value=6.4e-06 Score=87.15 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=63.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhh
Q 008246 398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLK 477 (572)
Q Consensus 398 ~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~ 477 (572)
.+|+++++|+++|.+|...|++++|+.+|++|+++ +|++.+ ...+|+++|.+|..+|
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~ae----A~~A~yNLAcaya~LG-------------- 126 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDE----AQAAYYNKACCHAYRE-------------- 126 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchH----HHHHHHHHHHHHHHcC--------------
Confidence 69999999999999999999999999999999996 777641 1135899999999999
Q ss_pred HhhhhhhccHHHHHHHHHHHhcC
Q 008246 478 LLSFVSQEKWEEGIAHLERIGNL 500 (572)
Q Consensus 478 ~~~~~~~g~~~eAi~~l~kal~l 500 (572)
++++|+++|++++++
T Consensus 127 --------r~dEAla~LrrALel 141 (453)
T PLN03098 127 --------EGKKAADCLRTALRD 141 (453)
T ss_pred --------CHHHHHHHHHHHHHh
Confidence 999999999999984
No 158
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.16 E-value=9.4e-06 Score=65.72 Aligned_cols=73 Identities=21% Similarity=0.201 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHh
Q 008246 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLL 479 (572)
Q Consensus 400 P~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~ 479 (572)
|+-+.++..+|.+|..+|++++|+++|++|+++....+ + ........+.++|.++...|
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~---~~~~~a~~~~~lg~~~~~~g---------------- 60 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLG--D---DHPDTANTLNNLGECYYRLG---------------- 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--T---HHHHHHHHHHHHHHHHHHTT----------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC--C---CCHHHHHHHHHHHHHHHHcC----------------
Confidence 34567899999999999999999999999998521111 1 22223467888899999999
Q ss_pred hhhhhccHHHHHHHHHHHhc
Q 008246 480 SFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 480 ~~~~~g~~~eAi~~l~kal~ 499 (572)
++++|+++++++++
T Consensus 61 ------~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 61 ------DYEEALEYYQKALD 74 (78)
T ss_dssp ------HHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHh
Confidence 99999999999987
No 159
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.16 E-value=1.5e-05 Score=86.33 Aligned_cols=137 Identities=17% Similarity=0.116 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~ 449 (572)
..++..+...++.++|...+...+..|+..|++.+.+...|..+...|+-++|.++.+.+++. ++...
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~-----d~~S~------- 75 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN-----DLKSH------- 75 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhcc-----Ccccc-------
Confidence 368899999999999999999999999999999999999999999999999999999999973 33332
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCH
Q 008246 450 VASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRN 529 (572)
Q Consensus 450 ~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~ 529 (572)
.-|..+|.++.... +|++|+++|+.|++ .+|+|.. .+.-|+....++|++
T Consensus 76 vCwHv~gl~~R~dK----------------------~Y~eaiKcy~nAl~----~~~dN~q----ilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDK----------------------KYDEAIKCYRNALK----IEKDNLQ----ILRDLSLLQIQMRDY 125 (700)
T ss_pred hhHHHHHHHHhhhh----------------------hHHHHHHHHHHHHh----cCCCcHH----HHHHHHHHHHHHHhh
Confidence 35788899998888 99999999999999 5666653 344477777788888
Q ss_pred HHHHHHHHHHHHhCCCCHH
Q 008246 530 AEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 530 eeA~~~l~~aL~l~P~~~~ 548 (572)
+.....-.+.++++|+...
T Consensus 126 ~~~~~tr~~LLql~~~~ra 144 (700)
T KOG1156|consen 126 EGYLETRNQLLQLRPSQRA 144 (700)
T ss_pred hhHHHHHHHHHHhhhhhHH
Confidence 8877777778888877543
No 160
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.15 E-value=7.6e-05 Score=69.68 Aligned_cols=139 Identities=20% Similarity=0.170 Sum_probs=110.3
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALN-KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~-~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~ 446 (572)
+....+.+|..+.+.|++.||+..|++++. ...+|+..+..+++..+..+++.+|...+++..+. +|..- .++
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~-----~pa~r-~pd 161 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY-----NPAFR-SPD 161 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc-----CCccC-CCC
Confidence 345678999999999999999999999987 57789999999999999999999999999999873 44432 333
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHc
Q 008246 447 LLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 526 (572)
Q Consensus 447 ~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~ 526 (572)
. ...+|.++..+| ++++|+..|+.++. -.|+ ..+...++..+.++
T Consensus 162 ~----~Ll~aR~laa~g----------------------~~a~Aesafe~a~~----~ypg-----~~ar~~Y~e~La~q 206 (251)
T COG4700 162 G----HLLFARTLAAQG----------------------KYADAESAFEVAIS----YYPG-----PQARIYYAEMLAKQ 206 (251)
T ss_pred c----hHHHHHHHHhcC----------------------CchhHHHHHHHHHH----hCCC-----HHHHHHHHHHHHHh
Confidence 2 345688888888 99999999999998 3332 24566789999999
Q ss_pred CCHHHHHHHHHH----HHHhCCCCH
Q 008246 527 GRNAEAEKYLRL----AAAHNPQYN 547 (572)
Q Consensus 527 g~~eeA~~~l~~----aL~l~P~~~ 547 (572)
|+.+||.+-|.. +.+..|.+.
T Consensus 207 gr~~ea~aq~~~v~d~~~r~~~H~r 231 (251)
T COG4700 207 GRLREANAQYVAVVDTAKRSRPHYR 231 (251)
T ss_pred cchhHHHHHHHHHHHHHHhcchhHH
Confidence 999998876654 444445554
No 161
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.13 E-value=1.2e-05 Score=88.68 Aligned_cols=111 Identities=13% Similarity=-0.028 Sum_probs=90.1
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCC--------cccHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008246 360 LKISVENLTPKELIALSVKFLSKGD--------KERPIPLLQLALNK--EPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~--------~~~A~~~l~~AL~~--dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rA 429 (572)
+++..||..+.++..++..+..... .+++.+..++++.+ +|.++.+|..+|..+...|++++|..+|++|
T Consensus 367 ~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rA 446 (517)
T PRK10153 367 EILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKA 446 (517)
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6999999999999988887755422 33455666666664 8889999999999999999999999999999
Q ss_pred HHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCC
Q 008246 430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEP 506 (572)
Q Consensus 430 l~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp 506 (572)
+++ +|+ ..+|..+|.++...| ++++|++.|++|+++ +|.+|
T Consensus 447 l~L-----~ps--------~~a~~~lG~~~~~~G----------------------~~~eA~~~~~~A~~L-~P~~p 487 (517)
T PRK10153 447 IDL-----EMS--------WLNYVLLGKVYELKG----------------------DNRLAADAYSTAFNL-RPGEN 487 (517)
T ss_pred HHc-----CCC--------HHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHhc-CCCCc
Confidence 985 332 247888999999999 999999999999994 34444
No 162
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.12 E-value=1.9e-05 Score=86.76 Aligned_cols=135 Identities=18% Similarity=0.165 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHH----------------------------HHcCCHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQ----------------------------LQKGLLE 420 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~----------------------------~~~g~~~ 420 (572)
.+.+.....+|...|+.++|....++-++ .|+++..|-.+|.+. ..+++|+
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs 502 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFS 502 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHH
Confidence 45666778888888988889888888888 556667776666553 2457777
Q ss_pred HHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcC
Q 008246 421 EAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNL 500 (572)
Q Consensus 421 eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l 500 (572)
++.+++++.+++ +|- ....|+.+|.+..+.+ ++..|.++|.+++.
T Consensus 503 ~~~~hle~sl~~-----npl-------q~~~wf~~G~~ALqle----------------------k~q~av~aF~rcvt- 547 (777)
T KOG1128|consen 503 EADKHLERSLEI-----NPL-------QLGTWFGLGCAALQLE----------------------KEQAAVKAFHRCVT- 547 (777)
T ss_pred HHHHHHHHHhhc-----Ccc-------chhHHHhccHHHHHHh----------------------hhHHHHHHHHHHhh-
Confidence 777777777764 222 2246788888888888 99999999999999
Q ss_pred CCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 501 KEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 501 ~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
.+|++. ++|.+++.+|...|+..+|...+++|++.+-++
T Consensus 548 ---L~Pd~~----eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 548 ---LEPDNA----EAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH 586 (777)
T ss_pred ---cCCCch----hhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence 566543 677789999999999999999999999988543
No 163
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.12 E-value=4.3e-06 Score=65.73 Aligned_cols=63 Identities=24% Similarity=0.375 Sum_probs=52.4
Q ss_pred hhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 008246 482 VSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 552 (572)
Q Consensus 482 ~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~ 552 (572)
++.|++++|++.|+++++ .+|++. ++++.+|.+|.+.|++++|.+.+++++..+|++......
T Consensus 2 l~~~~~~~A~~~~~~~l~----~~p~~~----~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQ----RNPDNP----EARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHH----HTTTSH----HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHH----HCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 355699999999999999 566544 566789999999999999999999999999997655443
No 164
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.09 E-value=9.6e-06 Score=65.67 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCH
Q 008246 450 VASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRN 529 (572)
Q Consensus 450 ~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~ 529 (572)
.++.++|.++..+| ++++|+++|++++++.. ..+........++.++|.++...|++
T Consensus 6 ~~~~~la~~~~~~~----------------------~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~lg~~~~~~g~~ 62 (78)
T PF13424_consen 6 NAYNNLARVYRELG----------------------RYDEALDYYEKALDIEE-QLGDDHPDTANTLNNLGECYYRLGDY 62 (78)
T ss_dssp HHHHHHHHHHHHTT-----------------------HHHHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 45778899998888 99999999999997521 22223333456788999999999999
Q ss_pred HHHHHHHHHHHHh
Q 008246 530 AEAEKYLRLAAAH 542 (572)
Q Consensus 530 eeA~~~l~~aL~l 542 (572)
++|++++++++++
T Consensus 63 ~~A~~~~~~al~i 75 (78)
T PF13424_consen 63 EEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999875
No 165
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.09 E-value=1.5e-05 Score=74.29 Aligned_cols=67 Identities=24% Similarity=0.195 Sum_probs=41.0
Q ss_pred cccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHH
Q 008246 385 KERPIPLLQLALNKEPDNINALILMGQTQLQKGLL----------EEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454 (572)
Q Consensus 385 ~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~----------~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~ 454 (572)
++.|.+.++.....||.|+++++.-|.++.++.++ ++|+.-|++|+.+ +|+. ..++++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-----~P~~-------hdAlw~ 74 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-----NPNK-------HDALWC 74 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH------TT--------HHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-----CCch-------HHHHHH
Confidence 46688888888888999999888888887765443 3344444444443 3332 245666
Q ss_pred HHHHHHHhh
Q 008246 455 SGVACIRQA 463 (572)
Q Consensus 455 lG~~~~~~g 463 (572)
+|.++..++
T Consensus 75 lGnA~ts~A 83 (186)
T PF06552_consen 75 LGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 676666666
No 166
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.08 E-value=8.3e-05 Score=81.80 Aligned_cols=139 Identities=17% Similarity=0.105 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
...++.+|..+...|++++|+.++++||+..|..++.++..|.++-..|++++|.++++.|..+ ++.|- .
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L-----D~~DR-y---- 263 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAREL-----DLADR-Y---- 263 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC-----ChhhH-H----
Confidence 3577899999999999999999999999999999999999999999999999999999999975 33321 1
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhh---hhHHHHHHHHHHHH
Q 008246 449 IVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAH---YYDGLVVLASALCN 525 (572)
Q Consensus 449 ~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~---~~~al~~Lg~~l~~ 525 (572)
.-...+..+.+.| +.++|.+.+..-.+-. .+|...-. -..-...-|.+|.+
T Consensus 264 --iNsK~aKy~LRa~----------------------~~e~A~~~~~~Ftr~~--~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 264 --INSKCAKYLLRAG----------------------RIEEAEKTASLFTRED--VDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred --HHHHHHHHHHHCC----------------------CHHHHHHHHHhhcCCC--CCcccCHHHHHHHHHHHHHHHHHHH
Confidence 1122355556666 9999999998887721 13322110 01123567999999
Q ss_pred cCCHHHHHHHHHHHHHhC
Q 008246 526 VGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 526 ~g~~eeA~~~l~~aL~l~ 543 (572)
.|++..|++.|..+.+.-
T Consensus 318 ~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 999999999999887753
No 167
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.08 E-value=3.2e-06 Score=57.29 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=32.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008246 391 LLQLALNKEPDNINALILMGQTQLQKGLLEEAVE 424 (572)
Q Consensus 391 ~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~ 424 (572)
+|++||+++|+|+++|+.||.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4899999999999999999999999999999963
No 168
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.07 E-value=0.00042 Score=71.72 Aligned_cols=170 Identities=16% Similarity=0.091 Sum_probs=108.4
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008246 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~ 445 (572)
+.+--..+..+..+..+|+++.|..-..++++..|.++++....-++|.+.|++.+....+.+..+ .+--++.+..
T Consensus 150 ~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k----a~~l~~~e~~ 225 (400)
T COG3071 150 DDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRK----AGLLSDEEAA 225 (400)
T ss_pred CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHH----ccCCChHHHH
Confidence 334556788889999999999999999999999999999999999999999999999988866554 1222222222
Q ss_pred hHHHHHHHHHHHHHHHhhchhh----------HHHHHhhhh----hHhhhhhhccHHHHHHHHHHHhcC-----------
Q 008246 446 DLLIVASQWSGVACIRQAAHNF----------FELVQQGQL----KLLSFVSQEKWEEGIAHLERIGNL----------- 500 (572)
Q Consensus 446 ~~~~~a~~~lG~~~~~~g~~~~----------~~a~~~~~~----~~~~~~~~g~~~eAi~~l~kal~l----------- 500 (572)
..-..++. |........... ......+.. .+.-+.+.|+.++|.+..+.+++-
T Consensus 226 ~le~~a~~--glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~ 303 (400)
T COG3071 226 RLEQQAWE--GLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIP 303 (400)
T ss_pred HHHHHHHH--HHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHh
Confidence 22222222 221111111110 011111111 112244455555555555555530
Q ss_pred -------------------CCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 501 -------------------KEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 501 -------------------~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
..|++| ..+..||..+++.+.+.+|.++++.+++..|+...
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p-------~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~ 363 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP-------LLLSTLGRLALKNKLWGKASEALEAALKLRPSASD 363 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh-------hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh
Confidence 122222 45678999999999999999999999999998654
No 169
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.07 E-value=0.00024 Score=70.03 Aligned_cols=156 Identities=19% Similarity=0.186 Sum_probs=117.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008246 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~---~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~ 441 (572)
+...++.++..|...++.|++++|+..|+......|.+ ..+.+.++.++.+.|++++|+...++-+++ .|++
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l-----yP~~ 104 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL-----YPTH 104 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-----CCCC
Confidence 44568899999999999999999999999999998877 488999999999999999999999999986 8887
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhh----------
Q 008246 442 PEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAH---------- 511 (572)
Q Consensus 442 ~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~---------- 511 (572)
+ +.+. +++..|.++...= .+.-..+.-..+|+..++..++ ..|++...
T Consensus 105 ~-n~dY---~~YlkgLs~~~~i--------------~~~~rDq~~~~~A~~~f~~~i~----ryPnS~Ya~dA~~~i~~~ 162 (254)
T COG4105 105 P-NADY---AYYLKGLSYFFQI--------------DDVTRDQSAARAAFAAFKELVQ----RYPNSRYAPDAKARIVKL 162 (254)
T ss_pred C-ChhH---HHHHHHHHHhccC--------------CccccCHHHHHHHHHHHHHHHH----HCCCCcchhhHHHHHHHH
Confidence 6 4332 4666677644332 0011112234677777788877 55654311
Q ss_pred ---hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008246 512 ---YYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 512 ---~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~ 547 (572)
...--+..|..|.+.|.+..|+.-++++++.-|+-.
T Consensus 163 ~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~ 201 (254)
T COG4105 163 NDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTS 201 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccccc
Confidence 000114678999999999999999999999877644
No 170
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.07 E-value=2.3e-05 Score=79.11 Aligned_cols=85 Identities=25% Similarity=0.302 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhc
Q 008246 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQE 485 (572)
Q Consensus 406 ~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g 485 (572)
.-..|+-|+.+|+|+||++||.+++.. +|.++ ..+.+.+.+|+++.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~-----~P~Np-------V~~~NRA~AYlk~K---------------------- 145 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAV-----YPHNP-------VYHINRALAYLKQK---------------------- 145 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhcc-----CCCCc-------cchhhHHHHHHHHH----------------------
Confidence 456688888888888888888888864 55543 23566778888888
Q ss_pred cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHH
Q 008246 486 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEA 532 (572)
Q Consensus 486 ~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA 532 (572)
+|..|+.....|+.| |. .|..++...|.+-..+|+.+||
T Consensus 146 ~FA~AE~DC~~AiaL----d~----~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 146 SFAQAEEDCEAAIAL----DK----LYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred HHHHHHHhHHHHHHh----hH----HHHHHHHHHHHHHHHHhhHHHH
Confidence 666666666666663 21 2444444455555555554443
No 171
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.07 E-value=3.2e-06 Score=87.02 Aligned_cols=162 Identities=17% Similarity=0.035 Sum_probs=107.2
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHH--
Q 008246 372 LIALSVKFLSKGDKERPIPLLQLALNKEPD------NINALILMGQTQLQKGL-------------LEEAVEYLECAI-- 430 (572)
Q Consensus 372 ~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~------~~~a~~~LG~l~~~~g~-------------~~eA~~~~~rAl-- 430 (572)
.-++|..+.-+|+|++|+.+..+-|....+ ..+|+|++|.+|..+|+ .+++.+.++.|+
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f 177 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF 177 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence 345688888899999999998887765432 36899999999998887 234444444444
Q ss_pred -----HhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhh--------------------hHhhhhhhc
Q 008246 431 -----SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQL--------------------KLLSFVSQE 485 (572)
Q Consensus 431 -----~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~--------------------~~~~~~~~g 485 (572)
++. ....+.-...+++-++|..|+-+| +|.+++..+++ ..+++.-.|
T Consensus 178 y~eNL~l~------~~lgDr~aqGRa~GnLGNTyYlLG--df~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 178 YMENLELS------EKLGDRLAQGRAYGNLGNTYYLLG--DFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHH------HHhhhHHhhcchhcccCceeeeec--cHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 321 000011122346677788888887 44444332222 235677889
Q ss_pred cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008246 486 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 486 ~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~ 543 (572)
+++.|+++|++.+.|. ..-.+...-....+.||+.|.-..++++|+.|..+-|++.
T Consensus 250 ~fe~A~ehYK~tl~LA--ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLA--IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred ccHhHHHHHHHHHHHH--HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987532 2222222233445779999999999999999998877764
No 172
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=4.4e-05 Score=79.27 Aligned_cols=132 Identities=14% Similarity=0.072 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPD---------------NINALILMGQTQLQKGLLEEAVEYLECAISKLFL 435 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~---------------~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~ 435 (572)
..-+.|..++..|+|..|...|++|+..=.. -..++.+++.+|...++|.+|+.+..++++.
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--- 286 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--- 286 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc---
Confidence 3456788899999999999999998875331 1357889999999999999999999999985
Q ss_pred cCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHH
Q 008246 436 AGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG 515 (572)
Q Consensus 436 ~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~a 515 (572)
+|++. -|+|..|.++...| +|+.|+..|+++++ .+|.|.+..
T Consensus 287 --~~~N~-------KALyRrG~A~l~~~----------------------e~~~A~~df~ka~k----~~P~Nka~~--- 328 (397)
T KOG0543|consen 287 --DPNNV-------KALYRRGQALLALG----------------------EYDLARDDFQKALK----LEPSNKAAR--- 328 (397)
T ss_pred --CCCch-------hHHHHHHHHHHhhc----------------------cHHHHHHHHHHHHH----hCCCcHHHH---
Confidence 55543 47788999999999 99999999999999 577765433
Q ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHHHhCC
Q 008246 516 LVVLASALCNVGRNAE-AEKYLRLAAAHNP 544 (572)
Q Consensus 516 l~~Lg~~l~~~g~~ee-A~~~l~~aL~l~P 544 (572)
..|..+-.+..++.+ ..+.|.+++..-+
T Consensus 329 -~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 329 -AELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 335555555555544 4788988887654
No 173
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.05 E-value=5.9e-05 Score=73.25 Aligned_cols=110 Identities=25% Similarity=0.257 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhh
Q 008246 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSF 481 (572)
Q Consensus 402 ~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~ 481 (572)
.++.++..|..+++.|++++|++.|++.+.. .|..+ ....+.+++|.++.+.|
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-----~P~s~----~a~~A~l~la~a~y~~~------------------ 56 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDR-----YPNSP----YAPQAQLMLAYAYYKQG------------------ 56 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTST----THHHHHHHHHHHHHHTT------------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCCh----HHHHHHHHHHHHHHHcC------------------
Confidence 5789999999999999999999999999975 66654 23357889999999999
Q ss_pred hhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCH
Q 008246 482 VSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG-----------RNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 482 ~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g-----------~~eeA~~~l~~aL~l~P~~~ 547 (572)
++++|+..+++.++ ..|.+|. ...+++.+|.+++... ...+|...|+..++..|+..
T Consensus 57 ----~y~~A~~~~~~fi~-~yP~~~~----~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 57 ----DYEEAIAAYERFIK-LYPNSPK----ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp -----HHHHHHHHHHHHH-H-TT-TT----HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred ----CHHHHHHHHHHHHH-HCCCCcc----hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence 99999999999999 3444443 2356777888876653 34589999999999999864
No 174
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.05 E-value=5.3e-06 Score=59.67 Aligned_cols=44 Identities=27% Similarity=0.390 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT 412 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l 412 (572)
|+.++.+|..+.+.|++++|++.|+++++.+|+|+++|..||.+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 46789999999999999999999999999999999999999863
No 175
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.02 E-value=0.00018 Score=67.30 Aligned_cols=132 Identities=20% Similarity=0.157 Sum_probs=101.2
Q ss_pred HHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHH
Q 008246 376 SVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS 455 (572)
Q Consensus 376 A~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~l 455 (572)
+....++=|.+.+.+...+.++..|.. .-++.||..+.+.|++.||..+|++++.- +... +. .....+
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG------~fA~-d~----a~lLgl 130 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSG------IFAH-DA----AMLLGL 130 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhcc------ccCC-CH----HHHHHH
Confidence 334445556777777788888888875 56789999999999999999999999962 2211 11 124556
Q ss_pred HHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 008246 456 GVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKY 535 (572)
Q Consensus 456 G~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~ 535 (572)
+.+....+ ++.+|...+++..+ -+|... ..+..+.+|.+|...|++++|+..
T Consensus 131 A~Aqfa~~----------------------~~A~a~~tLe~l~e----~~pa~r--~pd~~Ll~aR~laa~g~~a~Aesa 182 (251)
T COG4700 131 AQAQFAIQ----------------------EFAAAQQTLEDLME----YNPAFR--SPDGHLLFARTLAAQGKYADAESA 182 (251)
T ss_pred HHHHHhhc----------------------cHHHHHHHHHHHhh----cCCccC--CCCchHHHHHHHHhcCCchhHHHH
Confidence 67777777 99999999999998 233221 235667899999999999999999
Q ss_pred HHHHHHhCCCCH
Q 008246 536 LRLAAAHNPQYN 547 (572)
Q Consensus 536 l~~aL~l~P~~~ 547 (572)
|+.++...|+..
T Consensus 183 fe~a~~~ypg~~ 194 (251)
T COG4700 183 FEVAISYYPGPQ 194 (251)
T ss_pred HHHHHHhCCCHH
Confidence 999999999854
No 176
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.02 E-value=0.00013 Score=69.62 Aligned_cols=168 Identities=15% Similarity=0.147 Sum_probs=109.7
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008246 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P 439 (572)
+++.+.|.-|+++..+|.-+...|+++.|.+.|...+++||.+--++.+.|..+.--|++.-|.+-+.+-.+. +|
T Consensus 90 QaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~ 164 (297)
T COG4785 90 QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DP 164 (297)
T ss_pred hhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CC
Confidence 5777888889999999999999999999999999999999999999999999999999999999999877753 66
Q ss_pred CChhhhhHHHHHHHHHHHHHHHhhchhhHHH----HHhhhhhHh-----hh--hhhccHHHHHHHHHHHhcCCCCCCCch
Q 008246 440 TEPEAIDLLIVASQWSGVACIRQAAHNFFEL----VQQGQLKLL-----SF--VSQEKWEEGIAHLERIGNLKEPEEPKS 508 (572)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a----~~~~~~~~~-----~~--~~~g~~~eAi~~l~kal~l~~p~dp~~ 508 (572)
+|| ....|..+ .....+-.++ .+..+...+ .. .-.|+..+ ...++++.+.. -++...
T Consensus 165 ~DP-----fR~LWLYl-----~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~-e~l~~~~~a~a-~~n~~~ 232 (297)
T COG4785 165 NDP-----FRSLWLYL-----NEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE-ETLMERLKADA-TDNTSL 232 (297)
T ss_pred CCh-----HHHHHHHH-----HHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH-HHHHHHHHhhc-cchHHH
Confidence 665 11112111 1110110000 000000000 00 01122211 12233333311 022222
Q ss_pred hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008246 509 KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 544 (572)
Q Consensus 509 ~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P 544 (572)
.+...+++..||..+...|+.++|...|+-+++.+-
T Consensus 233 Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 233 AEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 334456778899999999999999999999998764
No 177
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.02 E-value=0.00035 Score=77.00 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=51.7
Q ss_pred hhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008246 481 FVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 481 ~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~ 547 (572)
|...|++++|+++.+++++ ..|... +.++..|.+|...|++++|.++++.|-.+|+.+.
T Consensus 204 yd~~g~~~~Al~~Id~aI~----htPt~~----ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 204 YDYLGDYEKALEYIDKAIE----HTPTLV----ELYMTKARILKHAGDLKEAAEAMDEARELDLADR 262 (517)
T ss_pred HHHhCCHHHHHHHHHHHHh----cCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence 4568999999999999999 567654 5567799999999999999999999999999765
No 178
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.01 E-value=0.00011 Score=78.07 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=94.0
Q ss_pred HHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHH
Q 008246 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA 458 (572)
Q Consensus 379 ~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~ 458 (572)
+...+++++|+..+++..+.+|+ +...++.++...++..+|++.+++++.. +|.+. ..+...+..
T Consensus 179 l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~-----~p~d~-------~LL~~Qa~f 243 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKE-----NPQDS-------ELLNLQAEF 243 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh-----CCCCH-------HHHHHHHHH
Confidence 34568999999999999999875 6777999999999999999999999974 55542 123344666
Q ss_pred HHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008246 459 CIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 538 (572)
Q Consensus 459 ~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~ 538 (572)
+...+ +++.|++..+++++ ..|.+ ++.|..|+.+|...|++++|+..+..
T Consensus 244 Ll~k~----------------------~~~lAL~iAk~av~----lsP~~----f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 244 LLSKK----------------------KYELALEIAKKAVE----LSPSE----FETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHhcC----------------------CHHHHHHHHHHHHH----hCchh----HHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 66666 99999999999999 45543 46778899999999999999987764
Q ss_pred H
Q 008246 539 A 539 (572)
Q Consensus 539 a 539 (572)
+
T Consensus 294 ~ 294 (395)
T PF09295_consen 294 C 294 (395)
T ss_pred C
Confidence 3
No 179
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.00 E-value=1.4e-05 Score=82.48 Aligned_cols=167 Identities=14% Similarity=0.007 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHh------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALN------KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~------~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
...|.++|..|.-.++|++|.++-..=|. -.-..+.+--+||+++-..|.|++|+.|..|-+.+....+
T Consensus 55 SAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLg----- 129 (639)
T KOG1130|consen 55 SAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELG----- 129 (639)
T ss_pred HHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHh-----
Confidence 34678899999999999999887443332 2234466677999999999999999999999887411011
Q ss_pred hhhhHHHHHHHHHHHHHHHhhchh----------h--------HHHHHhhhh--------------------hHhhhhhh
Q 008246 443 EAIDLLIVASQWSGVACIRQAAHN----------F--------FELVQQGQL--------------------KLLSFVSQ 484 (572)
Q Consensus 443 ~~~~~~~~a~~~lG~~~~~~g~~~----------~--------~~a~~~~~~--------------------~~~~~~~~ 484 (572)
+.-...+++|++|.+|...|+.. | ..++..+++ +.++|.-.
T Consensus 130 -Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlL 208 (639)
T KOG1130|consen 130 -DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLL 208 (639)
T ss_pred -HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeee
Confidence 11223568999999999998532 1 112222221 11346778
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008246 485 EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 485 g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~ 543 (572)
|+|++|+..-+.-+++. ..-.+...--.++.++|+++.-+|+++.|.++|++.+.+.
T Consensus 209 Gdf~~ai~~H~~RL~ia--~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 209 GDFDQAIHFHKLRLEIA--QEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred ccHHHHHHHHHHHHHHH--HHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 99999999776665532 2222333344678899999999999999999999976653
No 180
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.99 E-value=0.00017 Score=65.19 Aligned_cols=112 Identities=22% Similarity=0.208 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhh
Q 008246 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSF 481 (572)
Q Consensus 402 ~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~ 481 (572)
.+..++.-|.-.++.|+|++|++.|+..... .|..+ ....+...+|.++++.+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-----yP~g~----ya~qAqL~l~yayy~~~------------------ 61 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTR-----YPFGE----YAEQAQLDLAYAYYKQG------------------ 61 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCc----ccHHHHHHHHHHHHHcc------------------
Confidence 4688899999999999999999999887764 56543 22346788899999999
Q ss_pred hhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCC
Q 008246 482 VSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR---------------NAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 482 ~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~---------------~eeA~~~l~~aL~l~P~~ 546 (572)
++++|+..+++-++| +|.+|... -+++..|.+++++.+ ..+|...|++.++..|+.
T Consensus 62 ----~y~~A~a~~~rFirL-hP~hp~vd----Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 62 ----DYEEAIAAYDRFIRL-HPTHPNVD----YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred ----CHHHHHHHHHHHHHh-CCCCCCcc----HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 999999999999994 45555432 366778999988877 889999999999999987
Q ss_pred HHH
Q 008246 547 NEL 549 (572)
Q Consensus 547 ~~~ 549 (572)
.-.
T Consensus 133 ~ya 135 (142)
T PF13512_consen 133 EYA 135 (142)
T ss_pred hhH
Confidence 643
No 181
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.96 E-value=2e-05 Score=80.79 Aligned_cols=142 Identities=18% Similarity=0.191 Sum_probs=102.9
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~ 447 (572)
++-..+..|..+...|++++|++.+.+. ++.++....-++|+..||+|.|.+.++++-+. + +| ..
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~-eD----~~ 165 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQI-----D-ED----SI 165 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----S-CC----HH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C-Cc----HH
Confidence 3455677788888899999999988765 67899989999999999999999999887652 1 11 11
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcC
Q 008246 448 LIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG 527 (572)
Q Consensus 448 ~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g 527 (572)
......+.+....| .+++.+|.-.|+...+ ..+.+ ...+..+|.++..+|
T Consensus 166 --l~qLa~awv~l~~g--------------------~e~~~~A~y~f~El~~----~~~~t----~~~lng~A~~~l~~~ 215 (290)
T PF04733_consen 166 --LTQLAEAWVNLATG--------------------GEKYQDAFYIFEELSD----KFGST----PKLLNGLAVCHLQLG 215 (290)
T ss_dssp --HHHHHHHHHHHHHT--------------------TTCCCHHHHHHHHHHC----CS--S----HHHHHHHHHHHHHCT
T ss_pred --HHHHHHHHHHHHhC--------------------chhHHHHHHHHHHHHh----ccCCC----HHHHHHHHHHHHHhC
Confidence 11222233444555 2368999999999776 22222 245677999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHhcc
Q 008246 528 RNAEAEKYLRLAAAHNPQYNELLEQLE 554 (572)
Q Consensus 528 ~~eeA~~~l~~aL~l~P~~~~~l~~l~ 554 (572)
+++||++.++++++.+|++.+.+.++-
T Consensus 216 ~~~eAe~~L~~al~~~~~~~d~LaNli 242 (290)
T PF04733_consen 216 HYEEAEELLEEALEKDPNDPDTLANLI 242 (290)
T ss_dssp -HHHHHHHHHHHCCC-CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 999999999999999999888666443
No 182
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.95 E-value=0.0003 Score=83.85 Aligned_cols=154 Identities=15% Similarity=0.103 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~d-P~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~ 447 (572)
...+..+...+.+.|++++|.+.|++..+.+ +.+...|..+...|.+.|++++|.+.|++..+. .-.|+
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~---Gv~PD------- 648 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK---GVKPD------- 648 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC-------
Confidence 4566666777778888888888888887776 456677777888888888888888888777652 11111
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHhh---------------hhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhh
Q 008246 448 LIVASQWSGVACIRQAAHNFFELVQQG---------------QLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHY 512 (572)
Q Consensus 448 ~~~a~~~lG~~~~~~g~~~~~~a~~~~---------------~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~ 512 (572)
...|..+..++.+.|+.+ ++.+.. ...+..|.+.|++++|++.|++..+.. ..|+.
T Consensus 649 -~~TynsLI~a~~k~G~~e--eA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g--~~Pdv---- 719 (1060)
T PLN03218 649 -EVFFSALVDVAGHAGDLD--KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK--LRPTV---- 719 (1060)
T ss_pred -HHHHHHHHHHHHhCCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCH----
Confidence 123444555555555322 221111 112345666777777777777665421 23321
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 513 YDGLVVLASALCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 513 ~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l 542 (572)
..+..+...|.+.|++++|.+++++..+.
T Consensus 720 -vtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 720 -STMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 23455666677777777777777766543
No 183
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.89 E-value=0.00017 Score=85.60 Aligned_cols=147 Identities=18% Similarity=0.068 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~-----~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~ 443 (572)
.+....+|..+...|++++|..+++++++..+... .++..+|.++...|++++|..+++++++.. ....
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~-----~~~g- 525 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMA-----RQHD- 525 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----hhhc-
Confidence 34455678888899999999999999998655432 466788999999999999999999999741 1110
Q ss_pred hhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHH
Q 008246 444 AIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL 523 (572)
Q Consensus 444 ~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l 523 (572)
.......++.++|.++...| ++++|...+++++++...............+..+|.++
T Consensus 526 ~~~~~~~~~~~la~~~~~~G----------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 526 VYHYALWSLLQQSEILFAQG----------------------FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred chHHHHHHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 11122235566788888888 99999999988887421111000000112244678888
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 008246 524 CNVGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 524 ~~~g~~eeA~~~l~~aL~l~ 543 (572)
...|++++|.++++++++..
T Consensus 584 ~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhh
Confidence 88899999988888887753
No 184
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.83 E-value=0.00026 Score=81.70 Aligned_cols=58 Identities=19% Similarity=-0.022 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
.+..+...|.+.|+.++|.+.|++. .+.+..+|..+...|.+.|+.++|++.|++..+
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3444555555666666666666543 234555666666666666666666666655543
No 185
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.80 E-value=8.9e-05 Score=59.00 Aligned_cols=64 Identities=27% Similarity=0.328 Sum_probs=52.8
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008246 480 SFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 551 (572)
Q Consensus 480 ~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~ 551 (572)
.+.+.+++++|+++++++++ .+|.+. ..+..+|.++...|++++|.+.++++++.+|+......
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~----~~p~~~----~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALE----LDPDDP----ELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHH----hCcccc----hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 34455599999999999999 455433 45667999999999999999999999999998876543
No 186
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.79 E-value=0.00013 Score=77.42 Aligned_cols=96 Identities=23% Similarity=0.270 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
|+....+|..+...++-.+|++.++++++.+|++++.+...+..+..+|+++.|+++.++|+.. .|.+
T Consensus 200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l-----sP~~------- 267 (395)
T PF09295_consen 200 PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL-----SPSE------- 267 (395)
T ss_pred CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----Cchh-------
Confidence 4566778999999999999999999999999999999999999999999999999999999985 4544
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHh
Q 008246 449 IVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIG 498 (572)
Q Consensus 449 ~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal 498 (572)
...|+.++.+|...| ++++|+..+..+-
T Consensus 268 f~~W~~La~~Yi~~~----------------------d~e~ALlaLNs~P 295 (395)
T PF09295_consen 268 FETWYQLAECYIQLG----------------------DFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhcC----------------------CHHHHHHHHhcCc
Confidence 257899999999999 8898888776543
No 187
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.78 E-value=7.2e-05 Score=84.52 Aligned_cols=167 Identities=16% Similarity=0.111 Sum_probs=106.1
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
.+++..|+.-+.++..+|..|..-.+...|..+|++|.++|+.+++++-..+..|.+..++++|....-++-+. +
T Consensus 482 i~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk-----a 556 (1238)
T KOG1127|consen 482 IRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK-----A 556 (1238)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh-----c
Confidence 35677777777777888888777767777888888888888888888888888888888888777776555543 3
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchh-----hHHHHHhhhhh-------HhhhhhhccHHHHHHHHHHHhcCCCCCCC
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHN-----FFELVQQGQLK-------LLSFVSQEKWEEGIAHLERIGNLKEPEEP 506 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~-----~~~a~~~~~~~-------~~~~~~~g~~~eAi~~l~kal~l~~p~dp 506 (572)
|... -...|..+|..|.+.++.. +.-+.+.++.. ..+|.+.|+|.-|++.|.|+.. .+|
T Consensus 557 ~a~~-----~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~----LrP 627 (1238)
T KOG1127|consen 557 PAFA-----CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL----LRP 627 (1238)
T ss_pred hHHH-----HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh----cCc
Confidence 3221 1122344566555555222 11122223222 2345556678888888888877 455
Q ss_pred chhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008246 507 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 507 ~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~ 543 (572)
.+.. +.+..+...+..|+|++|.+.+...+...
T Consensus 628 ~s~y----~~fk~A~~ecd~GkYkeald~l~~ii~~~ 660 (1238)
T KOG1127|consen 628 LSKY----GRFKEAVMECDNGKYKEALDALGLIIYAF 660 (1238)
T ss_pred HhHH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4432 33446777777888888888777766543
No 188
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.77 E-value=0.0016 Score=61.50 Aligned_cols=135 Identities=15% Similarity=0.141 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINA---LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a---~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~ 447 (572)
..|..+....+.+.. +.....++....++....+ -..++..+...|++++|+..++.++. .|.|. +.
T Consensus 55 ~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~------~t~De---~l 124 (207)
T COG2976 55 AQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA------QTKDE---NL 124 (207)
T ss_pred HHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc------cchhH---HH
Confidence 445666666666665 7778888888888777543 44678889999999999999999996 44432 33
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcC
Q 008246 448 LIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG 527 (572)
Q Consensus 448 ~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g 527 (572)
...+...++.+...+| ++|+|+..++..-. +..... .-...|+++..+|
T Consensus 125 k~l~~lRLArvq~q~~----------------------k~D~AL~~L~t~~~------~~w~~~---~~elrGDill~kg 173 (207)
T COG2976 125 KALAALRLARVQLQQK----------------------KADAALKTLDTIKE------ESWAAI---VAELRGDILLAKG 173 (207)
T ss_pred HHHHHHHHHHHHHHhh----------------------hHHHHHHHHhcccc------ccHHHH---HHHHhhhHHHHcC
Confidence 3346677788888888 99999998876543 222211 1235899999999
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 008246 528 RNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 528 ~~eeA~~~l~~aL~l~P~~ 546 (572)
+.++|++.|+++++.+++.
T Consensus 174 ~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 174 DKQEARAAYEKALESDASP 192 (207)
T ss_pred chHHHHHHHHHHHHccCCh
Confidence 9999999999999997543
No 189
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.76 E-value=0.00054 Score=60.51 Aligned_cols=105 Identities=19% Similarity=0.156 Sum_probs=86.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhc
Q 008246 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQE 485 (572)
Q Consensus 406 ~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g 485 (572)
+-.-|..+.+.|+.++|++.|.+|+.+ .|..+ .+|++.+.++.-+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l-----~P~ra-------SayNNRAQa~RLq~---------------------- 91 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCL-----APERA-------SAYNNRAQALRLQG---------------------- 91 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHh-----cccch-------HhhccHHHHHHHcC----------------------
Confidence 345688899999999999999999986 45443 46788888888888
Q ss_pred cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 486 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 486 ~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
+.++|++.+++++++..+. ......++...|.+|...|+-|+|+.-|+.+-++...+..
T Consensus 92 ~~e~ALdDLn~AleLag~~----trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 92 DDEEALDDLNKALELAGDQ----TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred ChHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence 9999999999999986543 2233467788999999999999999999999888877654
No 190
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.00049 Score=70.05 Aligned_cols=152 Identities=16% Similarity=0.176 Sum_probs=99.8
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHH
Q 008246 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~ 452 (572)
.=+|.+++..|++++|...|+.+.+.+--+++.+.+||.+++..|.|.||...-++|-. .+ .-.+..
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k---------~p----L~~RLl 127 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK---------TP----LCIRLL 127 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC---------Ch----HHHHHH
Confidence 44577777888888888888888887777778888888888888888888776655432 11 111222
Q ss_pred HHHHHHHHHhhchh----hHHH---HHhhhh-hHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHH
Q 008246 453 QWSGVACIRQAAHN----FFEL---VQQGQL-KLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 524 (572)
Q Consensus 453 ~~lG~~~~~~g~~~----~~~a---~~~~~~-~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~ 524 (572)
++++ .+.|..+ +-+. .-.+++ ++.++...-.|.||++.|++++. ++|. |...-+++|.||.
T Consensus 128 fhla---hklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~----dn~e----y~alNVy~ALCyy 196 (557)
T KOG3785|consen 128 FHLA---HKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ----DNPE----YIALNVYMALCYY 196 (557)
T ss_pred HHHH---HHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh----cChh----hhhhHHHHHHHHH
Confidence 2222 1222111 0000 001111 12334455589999999999998 5553 3333357899999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 525 NVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 525 ~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
+++-++-+.+.++--|+..|+..-
T Consensus 197 KlDYydvsqevl~vYL~q~pdSti 220 (557)
T KOG3785|consen 197 KLDYYDVSQEVLKVYLRQFPDSTI 220 (557)
T ss_pred hcchhhhHHHHHHHHHHhCCCcHH
Confidence 999999999999999999998654
No 191
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.73 E-value=0.00044 Score=73.63 Aligned_cols=141 Identities=20% Similarity=0.157 Sum_probs=96.7
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHH
Q 008246 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~ 452 (572)
...-....+..+..+-+++.++||+++|+.++|+..||.- ...-..||+++|+||++.. .
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAg-----------E------- 231 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAG-----------E------- 231 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHH-----------H-------
Confidence 4455666788899999999999999999999999988753 3345789999999999731 0
Q ss_pred HHHHHHHHHhhchhhHHH---------HHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHH
Q 008246 453 QWSGVACIRQAAHNFFEL---------VQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL 523 (572)
Q Consensus 453 ~~lG~~~~~~g~~~~~~a---------~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l 523 (572)
..+|.....+....+.+. +....-.+.|..+.|+.+||++.++..++ ++|.. .....+.+|..++
T Consensus 232 ~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlk----e~p~~--~~l~IrenLie~L 305 (539)
T PF04184_consen 232 ASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLK----EFPNL--DNLNIRENLIEAL 305 (539)
T ss_pred HhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHh----hCCcc--chhhHHHHHHHHH
Confidence 001111111110011111 11112234566677799999999999998 44432 1345778899999
Q ss_pred HHcCCHHHHHHHHHHH
Q 008246 524 CNVGRNAEAEKYLRLA 539 (572)
Q Consensus 524 ~~~g~~eeA~~~l~~a 539 (572)
..+++|+|+.+.+.+-
T Consensus 306 Lelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 306 LELQAYADVQALLAKY 321 (539)
T ss_pred HhcCCHHHHHHHHHHh
Confidence 9999999999998885
No 192
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.70 E-value=0.00083 Score=80.13 Aligned_cols=158 Identities=11% Similarity=0.033 Sum_probs=119.3
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPD-NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~-~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~ 446 (572)
+...+..+...+.+.|+.++|.+.|++..+.... |...|..+-..|.+.|++++|.+.|++..+. .-.|+
T Consensus 471 D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~---Gv~PD------ 541 (1060)
T PLN03218 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK---NVKPD------ 541 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc---CCCCC------
Confidence 5667888888899999999999999999987643 7899999999999999999999999988762 11121
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHhh-----------------hhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchh
Q 008246 447 LLIVASQWSGVACIRQAAHNFFELVQQG-----------------QLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSK 509 (572)
Q Consensus 447 ~~~~a~~~lG~~~~~~g~~~~~~a~~~~-----------------~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~ 509 (572)
...|..+..++.+.|..+ ++.+.. ...+..|.+.|++++|.+.|+++.+.. ..|.
T Consensus 542 --~vTYnsLI~a~~k~G~~d--eA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g--i~p~-- 613 (1060)
T PLN03218 542 --RVVFNALISACGQSGAVD--RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN--IKGT-- 613 (1060)
T ss_pred --HHHHHHHHHHHHHCCCHH--HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCC--
Confidence 235666777777777433 222111 123456888999999999999998832 2222
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Q 008246 510 AHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH--NPQ 545 (572)
Q Consensus 510 ~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l--~P~ 545 (572)
...+..+...|.+.|++++|.+.|++..+. .|+
T Consensus 614 ---~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD 648 (1060)
T PLN03218 614 ---PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648 (1060)
T ss_pred ---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Confidence 135567899999999999999999999887 476
No 193
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00079 Score=67.52 Aligned_cols=136 Identities=24% Similarity=0.235 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
.+..+..+......|++.+|...|+.+++.+|++.++...++.+|...|+.++|...+.. .|.+.+.....
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~---------lP~~~~~~~~~ 204 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA---------LPLQAQDKAAH 204 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh---------CcccchhhHHH
Confidence 455678888899999999999999999999999999999999999999999999988843 23332111111
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCC
Q 008246 449 IVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 528 (572)
Q Consensus 449 ~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~ 528 (572)
..... -..+.+.. ...+..+ +++.+. .||++. ++.+.+|..|...|+
T Consensus 205 -~l~a~-i~ll~qaa----------------------~~~~~~~-l~~~~a----adPdd~----~aa~~lA~~~~~~g~ 251 (304)
T COG3118 205 -GLQAQ-IELLEQAA----------------------ATPEIQD-LQRRLA----ADPDDV----EAALALADQLHLVGR 251 (304)
T ss_pred -HHHHH-HHHHHHHh----------------------cCCCHHH-HHHHHH----hCCCCH----HHHHHHHHHHHHcCC
Confidence 00000 01111111 2233223 334444 355543 455679999999999
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 008246 529 NAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 529 ~eeA~~~l~~aL~l~P~~ 546 (572)
+++|.+++-..++.|-++
T Consensus 252 ~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 252 NEAALEHLLALLRRDRGF 269 (304)
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 999999999999998654
No 194
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.64 E-value=0.0012 Score=76.16 Aligned_cols=63 Identities=14% Similarity=0.046 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~d-P~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
...|..+...|.+.|+.++|+..|++..+.. .-|...+..+...+.+.|++++|.+.++..++
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 4456666666666677777766666665532 11344566666666666666666666666665
No 195
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.61 E-value=0.00035 Score=66.80 Aligned_cols=83 Identities=22% Similarity=0.177 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
+..+++.|..|-+.|-.+-|.--|.+++.++|+-+++...||.-+...|+++.|.+.|...+++ +|..
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-----Dp~y------- 132 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPTY------- 132 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-----CCcc-------
Confidence 5678999999999999999999999999999999999999999999999999999999999985 5554
Q ss_pred HHHHHHHHHHHHHhh
Q 008246 449 IVASQWSGVACIRQA 463 (572)
Q Consensus 449 ~~a~~~lG~~~~~~g 463 (572)
..++.+.|..++.-|
T Consensus 133 ~Ya~lNRgi~~YY~g 147 (297)
T COG4785 133 NYAHLNRGIALYYGG 147 (297)
T ss_pred hHHHhccceeeeecC
Confidence 246677888888888
No 196
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.60 E-value=0.001 Score=78.89 Aligned_cols=143 Identities=17% Similarity=0.067 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPD---------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~---------~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P 439 (572)
+......+..+...|++++|..+++++.+.-+. ...+...+|.++...|++++|..+++++++. .+
T Consensus 409 ~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~~ 483 (903)
T PRK04841 409 PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAE-----LP 483 (903)
T ss_pred cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CC
Confidence 344566788888899999999999988765322 2345567788899999999999999999873 22
Q ss_pred CChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHH
Q 008246 440 TEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL 519 (572)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~L 519 (572)
.. .......+...+|.++...| ++++|...++++++... ..........++..+
T Consensus 484 ~~--~~~~~~~a~~~lg~~~~~~G----------------------~~~~A~~~~~~al~~~~--~~g~~~~~~~~~~~l 537 (903)
T PRK04841 484 LT--WYYSRIVATSVLGEVHHCKG----------------------ELARALAMMQQTEQMAR--QHDVYHYALWSLLQQ 537 (903)
T ss_pred Cc--cHHHHHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHHHh--hhcchHHHHHHHHHH
Confidence 21 11111234566777777777 99999999999986321 111111222456789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 008246 520 ASALCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 520 g~~l~~~g~~eeA~~~l~~aL~l 542 (572)
|.++...|++++|.++++++++.
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999886
No 197
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.60 E-value=0.00043 Score=70.68 Aligned_cols=155 Identities=13% Similarity=0.046 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNI------NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~------~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~ 443 (572)
.++..+|..++..+.++++++.|++|++..-++. ++...||.++.+..|+++|+-+..+|.++. +.-...
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv----~s~~l~ 198 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV----NSYGLK 198 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH----HhcCcC
Confidence 3455588899999999999999999998765543 567789999999999999999999999852 100000
Q ss_pred hhh--HHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHH
Q 008246 444 AID--LLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAS 521 (572)
Q Consensus 444 ~~~--~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~ 521 (572)
+.. .-..+.+.+++++..+| +..+|.++.+++.++. ..-.+...+..-+..+|+
T Consensus 199 d~~~kyr~~~lyhmaValR~~G----------------------~LgdA~e~C~Ea~kla--l~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 199 DWSLKYRAMSLYHMAVALRLLG----------------------RLGDAMECCEEAMKLA--LQHGDRALQARCLLCFAD 254 (518)
T ss_pred chhHHHHHHHHHHHHHHHHHhc----------------------ccccHHHHHHHHHHHH--HHhCChHHHHHHHHHHHH
Confidence 111 11225677788888888 8888888888887643 333344455566778999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 008246 522 ALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 552 (572)
Q Consensus 522 ~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~ 552 (572)
+|...|+.|.|-.-|++|...--...+-+.+
T Consensus 255 IyR~~gd~e~af~rYe~Am~~m~~~gdrmgq 285 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMGTMASLGDRMGQ 285 (518)
T ss_pred HHHhcccHhHHHHHHHHHHHHHhhhhhhHHH
Confidence 9999999999999999988765444333333
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.00092 Score=65.72 Aligned_cols=140 Identities=14% Similarity=0.137 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKE-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~d-P~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~ 449 (572)
..+-.+..++..|+|.-....+++.++.| |.++.....||.+..+.||.+.|..+|++.-.. .+--+ ......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~---~~kL~---~~q~~~ 252 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV---TQKLD---GLQGKI 252 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH---Hhhhh---ccchhH
Confidence 45666778888999999999999999999 677888889999999999999999999976531 00000 111111
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCH
Q 008246 450 VASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRN 529 (572)
Q Consensus 450 ~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~ 529 (572)
..+-+.+.++ +-++++.+|...|.++++ .|+.+. .+..+.|.|+.-.|+.
T Consensus 253 ~V~~n~a~i~----------------------lg~nn~a~a~r~~~~i~~----~D~~~~----~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 253 MVLMNSAFLH----------------------LGQNNFAEAHRFFTEILR----MDPRNA----VANNNKALCLLYLGKL 302 (366)
T ss_pred HHHhhhhhhe----------------------ecccchHHHHHHHhhccc----cCCCch----hhhchHHHHHHHHHHH
Confidence 1223333333 334499999999999998 454443 3345688999999999
Q ss_pred HHHHHHHHHHHHhCCCC
Q 008246 530 AEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 530 eeA~~~l~~aL~l~P~~ 546 (572)
.+|++..+.+++.+|..
T Consensus 303 ~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 303 KDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHhccCCcc
Confidence 99999999999999974
No 199
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.57 E-value=0.00093 Score=73.19 Aligned_cols=125 Identities=29% Similarity=0.295 Sum_probs=96.1
Q ss_pred hcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHH
Q 008246 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACI 460 (572)
Q Consensus 381 ~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~ 460 (572)
...+.+.|++.++...+..|+.+-.++..|+++..+|+.++|+++|++++.. ... ........++.+|.++.
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~-----q~~---~~Ql~~l~~~El~w~~~ 316 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIES-----QSE---WKQLHHLCYFELAWCHM 316 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccc-----hhh---HHhHHHHHHHHHHHHHH
Confidence 3556778999999999999999999999999999999999999999999852 111 22222335666788887
Q ss_pred HhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCH-------HHHH
Q 008246 461 RQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRN-------AEAE 533 (572)
Q Consensus 461 ~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~-------eeA~ 533 (572)
.+. +|++|.+++.+..+ .+.-+...| .+..|.++...|+. ++|.
T Consensus 317 ~~~----------------------~w~~A~~~f~~L~~----~s~WSka~Y---~Y~~a~c~~~l~~~~~~~~~~~~a~ 367 (468)
T PF10300_consen 317 FQH----------------------DWEEAAEYFLRLLK----ESKWSKAFY---AYLAAACLLMLGREEEAKEHKKEAE 367 (468)
T ss_pred HHc----------------------hHHHHHHHHHHHHh----ccccHHHHH---HHHHHHHHHhhccchhhhhhHHHHH
Confidence 777 99999999999998 333333222 25679999999999 7777
Q ss_pred HHHHHHHHh
Q 008246 534 KYLRLAAAH 542 (572)
Q Consensus 534 ~~l~~aL~l 542 (572)
++++++-..
T Consensus 368 ~l~~~vp~l 376 (468)
T PF10300_consen 368 ELFRKVPKL 376 (468)
T ss_pred HHHHHHHHH
Confidence 777776443
No 200
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.56 E-value=0.003 Score=58.70 Aligned_cols=143 Identities=26% Similarity=0.289 Sum_probs=91.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008246 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQ-TQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~-l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~ 443 (572)
.+.....+...+......+++++++..+++++..++++.......+. ++...|++++|..+|++++.. +|..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-- 163 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL-----DPEL-- 163 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCc--
Confidence 44456778888888889999999999999999988888777777777 899999999999999999752 3310
Q ss_pred hhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHH
Q 008246 444 AIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL 523 (572)
Q Consensus 444 ~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l 523 (572)
..........+..+...+ ++++|+..+++++.. .+.. ....+..++..+
T Consensus 164 --~~~~~~~~~~~~~~~~~~----------------------~~~~a~~~~~~~~~~----~~~~---~~~~~~~~~~~~ 212 (291)
T COG0457 164 --NELAEALLALGALLEALG----------------------RYEEALELLEKALKL----NPDD---DAEALLNLGLLY 212 (291)
T ss_pred --cchHHHHHHhhhHHHHhc----------------------CHHHHHHHHHHHHhh----Cccc---chHHHHHhhHHH
Confidence 011112233333344444 556666666666552 1110 112334455555
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC
Q 008246 524 CNVGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 524 ~~~g~~eeA~~~l~~aL~l~P~ 545 (572)
...+++++|...+.+++...|.
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 213 LKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHcccHHHHHHHHHHHHhhCcc
Confidence 5556666666666666665554
No 201
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.55 E-value=0.0002 Score=66.90 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=58.4
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCC----------cccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGD----------KERPIPLLQLALNKEPDNINALILMGQTQLQKGL---------- 418 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~----------~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~---------- 418 (572)
+.....+|.|++.++..|..+++..+ +++|+.-|++||.++|+..++++.+|.+|...+.
T Consensus 15 ea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~ 94 (186)
T PF06552_consen 15 EAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEE 94 (186)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHH
Confidence 45677889999999999988876544 3567888999999999999999999999976554
Q ss_pred -HHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 419 -LEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 419 -~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
|++|.++|++|.+. +|++.
T Consensus 95 ~F~kA~~~FqkAv~~-----~P~ne 114 (186)
T PF06552_consen 95 YFEKATEYFQKAVDE-----DPNNE 114 (186)
T ss_dssp HHHHHHHHHHHHHHH------TT-H
T ss_pred HHHHHHHHHHHHHhc-----CCCcH
Confidence 67777788888775 56553
No 202
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.00067 Score=73.28 Aligned_cols=130 Identities=18% Similarity=0.134 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~ 449 (572)
+.++..-..+...|++++|+....+.+...|++..+.+..-.++.+.++|++|+...++-.. .. ...
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---------~~-~~~--- 79 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---------LL-VIN--- 79 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---------hh-hcc---
Confidence 56777777788999999999999999999999999999999999999999999965543221 00 111
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCH
Q 008246 450 VASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRN 529 (572)
Q Consensus 450 ~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~ 529 (572)
...+..+.|.++++ +.|+|+..++-+-+ +++ ..+...|.+++++|+|
T Consensus 80 ~~~fEKAYc~Yrln----------------------k~Dealk~~~~~~~----~~~-------~ll~L~AQvlYrl~~y 126 (652)
T KOG2376|consen 80 SFFFEKAYCEYRLN----------------------KLDEALKTLKGLDR----LDD-------KLLELRAQVLYRLERY 126 (652)
T ss_pred hhhHHHHHHHHHcc----------------------cHHHHHHHHhcccc----cch-------HHHHHHHHHHHHHhhH
Confidence 11145577777777 99999999983322 332 3456689999999999
Q ss_pred HHHHHHHHHHHHhCCC
Q 008246 530 AEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 530 eeA~~~l~~aL~l~P~ 545 (572)
++|.+.|+..++-+-+
T Consensus 127 dealdiY~~L~kn~~d 142 (652)
T KOG2376|consen 127 DEALDIYQHLAKNNSD 142 (652)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 9999999998877644
No 203
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.0018 Score=64.75 Aligned_cols=144 Identities=15% Similarity=0.123 Sum_probs=96.7
Q ss_pred HHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHH
Q 008246 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA 458 (572)
Q Consensus 379 ~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~ 458 (572)
+....++++|++++.--.+.+|.+-.++..||.+|+...+|.+|.+||++.-.. .|...+ . ....+..
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql-----~P~~~q-Y------rlY~AQS 87 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL-----HPELEQ-Y------RLYQAQS 87 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ChHHHH-H------HHHHHHH
Confidence 467789999999999999999999999999999999999999999999998764 444321 1 1112333
Q ss_pred HHHhhchh--------------h-HHHHHhhh----------------------hhHh-------hhhhhccHHHHHHHH
Q 008246 459 CIRQAAHN--------------F-FELVQQGQ----------------------LKLL-------SFVSQEKWEEGIAHL 494 (572)
Q Consensus 459 ~~~~g~~~--------------~-~~a~~~~~----------------------~~~~-------~~~~~g~~~eAi~~l 494 (572)
+++.++.. . .+..++.. ..+. .+.+.|++++|++-|
T Consensus 88 LY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 33333111 0 00000000 0000 145788999999999
Q ss_pred HHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 495 ERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 495 ~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l 542 (572)
+.+++... -+|. .-++++.++++.|+++.|.++..+.++.
T Consensus 168 qaAlqvsG-yqpl-------lAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 168 QAALQVSG-YQPL-------LAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHHHhhcC-CCch-------hHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 99988432 2332 2246888999999999999877665543
No 204
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00043 Score=67.11 Aligned_cols=98 Identities=17% Similarity=0.151 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~ 447 (572)
..+.+-+.|..+....+|+.|+.+|.+||.++|..+.-|-+.+.+|++.++++.+..-.++|+++ .|+
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql-----~~N------- 76 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL-----DPN------- 76 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc-----ChH-------
Confidence 35566677888888888999999999999999999888889999999999999999999999975 222
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 448 LIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 448 ~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
...+++.+|....... .|++|+..++++..
T Consensus 77 ~vk~h~flg~~~l~s~----------------------~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSK----------------------GYDEAIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHHHHHhhc----------------------cccHHHHHHHHHHH
Confidence 2357788888888888 88889988888854
No 205
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.0029 Score=61.39 Aligned_cols=151 Identities=13% Similarity=0.069 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhhcCCCCC
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN------ALILMGQTQLQK-GLLEEAVEYLECAISKLFLAGHPTE 441 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~------a~~~LG~l~~~~-g~~~eA~~~~~rAl~~l~~~~~P~~ 441 (572)
....+..|...+.+++..+|+.++++++++.-+-.+ -+..+|.+|... .++++|+.+|++|.+- ..++-
T Consensus 73 aat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~--yk~ee-- 148 (288)
T KOG1586|consen 73 AATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY--YKGEE-- 148 (288)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH--Hcchh--
Confidence 334555666666778999999999999988765433 344788888765 8899999999998863 11110
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHH
Q 008246 442 PEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAS 521 (572)
Q Consensus 442 ~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~ 521 (572)
.....+..+.-.+......+ +|.+|++.|+++.+-. -+++......-+-++.-|.
T Consensus 149 --s~ssANKC~lKvA~yaa~le----------------------qY~~Ai~iyeqva~~s-~~n~LLKys~KdyflkAgL 203 (288)
T KOG1586|consen 149 --SVSSANKCLLKVAQYAAQLE----------------------QYSKAIDIYEQVARSS-LDNNLLKYSAKDYFLKAGL 203 (288)
T ss_pred --hhhhHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHh-ccchHHHhHHHHHHHHHHH
Confidence 11111111222233333344 9999999999998721 1122111000011234578
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 522 ALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 522 ~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
|++-..+.-.+...+++-.+++|.+.+
T Consensus 204 Chl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 204 CHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 888888988999999999999998753
No 206
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.00083 Score=68.47 Aligned_cols=147 Identities=17% Similarity=0.143 Sum_probs=94.1
Q ss_pred HHHHhcCCcccHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHH
Q 008246 377 VKFLSKGDKERPIPLLQLALNKEPDNI-NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS 455 (572)
Q Consensus 377 ~~~~~~g~~~~A~~~l~~AL~~dP~~~-~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~l 455 (572)
..++.+.++..|+..++-.+..+.+.- ..-.-+|.+++..|+|++|+..|+-+.+. ++ .....+.++
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-------~~-----~~~el~vnL 97 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-------DD-----APAELGVNL 97 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-------CC-----CCcccchhH
Confidence 345678999999999999988776544 55566799999999999999999776642 11 112346778
Q ss_pred HHHHHHhhchhhHHHHHhh----hhhHhh--hh--hhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcC
Q 008246 456 GVACIRQAAHNFFELVQQG----QLKLLS--FV--SQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG 527 (572)
Q Consensus 456 G~~~~~~g~~~~~~a~~~~----~~~~~~--~~--~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g 527 (572)
+.++..+|....++++... ++..+. ++ +.++ ++-+-.|..-+. |. .+-.+.||.+.+..-
T Consensus 98 Acc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd-Ek~~~~fh~~Lq-----D~------~EdqLSLAsvhYmR~ 165 (557)
T KOG3785|consen 98 ACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND-EKRILTFHSSLQ-----DT------LEDQLSLASVHYMRM 165 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc-HHHHHHHHHHHh-----hh------HHHHHhHHHHHHHHH
Confidence 9999999933322222111 011111 11 1111 222333333333 11 122356788888888
Q ss_pred CHHHHHHHHHHHHHhCCCCH
Q 008246 528 RNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 528 ~~eeA~~~l~~aL~l~P~~~ 547 (572)
.|.||++.|++.|..+|++.
T Consensus 166 HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHHHHHHHHHhcChhhh
Confidence 99999999999999999864
No 207
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.0044 Score=61.28 Aligned_cols=177 Identities=18% Similarity=0.179 Sum_probs=107.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008246 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (572)
Q Consensus 361 ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~ 440 (572)
+-+.+..+.-.+..-|..+...|++++|.+...+ -.+-++...--+++.+..++|-|++.+++..++
T Consensus 100 a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-------- 166 (299)
T KOG3081|consen 100 ADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQI-------- 166 (299)
T ss_pred HhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------
Confidence 3444444555677778889999999999887766 345566666668889999999999999998864
Q ss_pred ChhhhhHHHHHHHHHHHHHH--HhhchhhHHHHHhhhh--------------hHhhhhhhccHHHHHHHHHHHhcCCCCC
Q 008246 441 EPEAIDLLIVASQWSGVACI--RQAAHNFFELVQQGQL--------------KLLSFVSQEKWEEGIAHLERIGNLKEPE 504 (572)
Q Consensus 441 ~~~~~~~~~~a~~~lG~~~~--~~g~~~~~~a~~~~~~--------------~~~~~~~~g~~~eAi~~l~kal~l~~p~ 504 (572)
+.+. ....++.++. ..|-.+..++.-.++. .+.+.+.+|+|+||...++.++. .
T Consensus 167 ---ded~---tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~----k 236 (299)
T KOG3081|consen 167 ---DEDA---TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD----K 236 (299)
T ss_pred ---chHH---HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh----c
Confidence 1111 1222333222 2222222233222222 12356778888888888888887 3
Q ss_pred CCchhhhhhHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHhccccchHHhhhhhh
Q 008246 505 EPKSKAHYYDGLVVLASALCNVGRNAEAE-KYLRLAAAHNPQYNELLEQLENNDEEFVSDLSS 566 (572)
Q Consensus 505 dp~~~~~~~~al~~Lg~~l~~~g~~eeA~-~~l~~aL~l~P~~~~~l~~l~~~~~~~~~~~~~ 566 (572)
+++. .+++.++-.+-...|..+++. +++.+....+|.+.-....-++ +.+| ++++.
T Consensus 237 d~~d----petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~ek-eaeF-Drl~~ 293 (299)
T KOG3081|consen 237 DAKD----PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNEK-EAEF-DRLVL 293 (299)
T ss_pred cCCC----HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHHH-HHHH-HHHHH
Confidence 4432 356667777777777776654 5556666667777543333333 4444 33443
No 208
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.38 E-value=0.0072 Score=56.08 Aligned_cols=127 Identities=29% Similarity=0.365 Sum_probs=103.4
Q ss_pred HHHhcCCcccHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHH
Q 008246 378 KFLSKGDKERPIPLLQLALNKEP---DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454 (572)
Q Consensus 378 ~~~~~g~~~~A~~~l~~AL~~dP---~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~ 454 (572)
.+...|++++|...+++++..+| .........+..+...+++++|...+.+++.. .+.. ....+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~------~~~~~~~ 207 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-----NPDD------DAEALLN 207 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-----Cccc------chHHHHH
Confidence 78899999999999999999888 56788888888899999999999999999974 2221 1234566
Q ss_pred HHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHH
Q 008246 455 SGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEK 534 (572)
Q Consensus 455 lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~ 534 (572)
++..+...+ ++++|+..+.+++. ..|. ....+..++..+...|+.++|..
T Consensus 208 ~~~~~~~~~----------------------~~~~a~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 257 (291)
T COG0457 208 LGLLYLKLG----------------------KYEEALEYYEKALE----LDPD----NAEALYNLALLLLELGRYEEALE 257 (291)
T ss_pred hhHHHHHcc----------------------cHHHHHHHHHHHHh----hCcc----cHHHHhhHHHHHHHcCCHHHHHH
Confidence 788888887 99999999999998 3443 12344567777777888999999
Q ss_pred HHHHHHHhCCC
Q 008246 535 YLRLAAAHNPQ 545 (572)
Q Consensus 535 ~l~~aL~l~P~ 545 (572)
.++++++.+|.
T Consensus 258 ~~~~~~~~~~~ 268 (291)
T COG0457 258 ALEKALELDPD 268 (291)
T ss_pred HHHHHHHhCcc
Confidence 99999999997
No 209
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.38 E-value=0.00049 Score=49.36 Aligned_cols=42 Identities=33% Similarity=0.405 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 514 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 514 ~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
+++..+|.+|...|++++|++.|+++++.+|++.+.+..+.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356789999999999999999999999999999998877643
No 210
>PLN03077 Protein ECB2; Provisional
Probab=97.35 E-value=0.0045 Score=73.18 Aligned_cols=152 Identities=15% Similarity=0.156 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNK--EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~--dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~ 446 (572)
...+..+...+...|+.++|++.|++..+. .|+.. .+..+-..+...|+.++|.++|++..+. .+-.+
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~v~ea~~~f~~M~~~-----~gi~P---- 623 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSRSGMVTQGLEYFHSMEEK-----YSITP---- 623 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhhcChHHHHHHHHHHHHHH-----hCCCC----
Confidence 334444445555555555555555554442 23322 2223333455555555555555554421 11100
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHhhhh------------hHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhH
Q 008246 447 LLIVASQWSGVACIRQAAHNFFELVQQGQL------------KLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYD 514 (572)
Q Consensus 447 ~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~------------~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~ 514 (572)
....|..+..++.+.|+. .+|.+..+. ....+...|+.+.|....++++++ +|++..
T Consensus 624 -~~~~y~~lv~~l~r~G~~--~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l----~p~~~~---- 692 (857)
T PLN03077 624 -NLKHYACVVDLLGRAGKL--TEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFEL----DPNSVG---- 692 (857)
T ss_pred -chHHHHHHHHHHHhCCCH--HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCCCcc----
Confidence 012344445555555522 222111110 112233455566666666666662 333221
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 515 GLVVLASALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 515 al~~Lg~~l~~~g~~eeA~~~l~~aL~ 541 (572)
.+..++++|...|++++|.+..+..-+
T Consensus 693 ~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 693 YYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 234566677777777777766665543
No 211
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0042 Score=60.63 Aligned_cols=115 Identities=23% Similarity=0.185 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---hcCCCCChhhhhHH---HHHHHHHHHHHHHhhchhhHHHHHhhhhh
Q 008246 404 NALILMGQTQLQKGLLEEAVEYLECAISKLF---LAGHPTEPEAIDLL---IVASQWSGVACIRQAAHNFFELVQQGQLK 477 (572)
Q Consensus 404 ~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~---~~~~P~~~~~~~~~---~~a~~~lG~~~~~~g~~~~~~a~~~~~~~ 477 (572)
.++..-|+-++..|+|+||...|+.|+..+. +...|.+++..... ...+.++..|+...|
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~-------------- 244 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE-------------- 244 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH--------------
Confidence 4455566666777777777777777765321 12234443222111 012455566666666
Q ss_pred HhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 478 LLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 478 ~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
+|-+++++...+++ .+|++.. |++..|.++...=+.+||.+-+.++|+++|....
T Consensus 245 --------e~yevleh~seiL~----~~~~nvK----A~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 245 --------EYYEVLEHCSEILR----HHPGNVK----AYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred --------HHHHHHHHHHHHHh----cCCchHH----HHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 99999999999999 6777764 4455888888888999999999999999998764
No 212
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.33 E-value=0.00035 Score=46.89 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 514 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 514 ~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
+++..+|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467789999999999999999999999999974
No 213
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.32 E-value=0.0027 Score=60.22 Aligned_cols=100 Identities=22% Similarity=0.195 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~-----~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~ 445 (572)
.+-.-|..++.+|+|++|..-|..||++-|..+ -.+.+.|-+...++.++.|++...+|+++ +|+.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-----~pty---- 167 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-----NPTY---- 167 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-----Cchh----
Confidence 445668889999999999999999999999764 45667888999999999999999999986 5543
Q ss_pred hHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCch
Q 008246 446 DLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKS 508 (572)
Q Consensus 446 ~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~ 508 (572)
..|....+.+|.+.. +|++|++.|+++++ .||..
T Consensus 168 ---~kAl~RRAeayek~e----------------------k~eealeDyKki~E----~dPs~ 201 (271)
T KOG4234|consen 168 ---EKALERRAEAYEKME----------------------KYEEALEDYKKILE----SDPSR 201 (271)
T ss_pred ---HHHHHHHHHHHHhhh----------------------hHHHHHHHHHHHHH----hCcch
Confidence 245566677777777 99999999999999 57753
No 214
>PLN03077 Protein ECB2; Provisional
Probab=97.30 E-value=0.0016 Score=76.97 Aligned_cols=150 Identities=13% Similarity=0.055 Sum_probs=105.2
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHH
Q 008246 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (572)
Q Consensus 374 ~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~ 453 (572)
.+-..|.+.|+.++|...|++. +.|...|..+...|.+.|+.++|++.|++..+. .-.|+.. .+.
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~---g~~Pd~~--------T~~ 593 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES---GVNPDEV--------TFI 593 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCcc--------cHH
Confidence 4456778899999999999886 568899999999999999999999999998862 2233332 233
Q ss_pred HHHHHHHHhhchh----hHHH-H---------HhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHH
Q 008246 454 WSGVACIRQAAHN----FFEL-V---------QQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVL 519 (572)
Q Consensus 454 ~lG~~~~~~g~~~----~~~a-~---------~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~L 519 (572)
.+-.++.+.|..+ +++. . .........+.+.|+++||.+.+++.- ..|+. ..|..|
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-----~~pd~-----~~~~aL 663 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-----ITPDP-----AVWGAL 663 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-----CCCCH-----HHHHHH
Confidence 3334455555222 1111 1 122234456888999999999998752 34432 234445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 520 ASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 520 g~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
-.++...|+.+.|+...+++++++|++..
T Consensus 664 l~ac~~~~~~e~~e~~a~~l~~l~p~~~~ 692 (857)
T PLN03077 664 LNACRIHRHVELGELAAQHIFELDPNSVG 692 (857)
T ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcc
Confidence 55677889999999999999999998754
No 215
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.25 E-value=0.00065 Score=45.30 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 514 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 514 ~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
+++..+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356789999999999999999999999999985
No 216
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.21 E-value=0.00048 Score=45.99 Aligned_cols=29 Identities=41% Similarity=0.544 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 404 NALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 404 ~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
++|+.+|.++...|++++|+++|++++++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45666666666666666666666666654
No 217
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.20 E-value=0.00037 Score=46.75 Aligned_cols=29 Identities=34% Similarity=0.454 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 404 NALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 404 ~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
++|+.+|.+|..+|++++|+++|++|+++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45666666666666666666666666654
No 218
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.18 E-value=0.0064 Score=71.47 Aligned_cols=156 Identities=16% Similarity=0.053 Sum_probs=113.3
Q ss_pred CcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhh
Q 008246 384 DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQA 463 (572)
Q Consensus 384 ~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g 463 (572)
+-.+-.+-|++.+.-+|+.+-.|+.+-..+++.++.++|.+..+||+..+ ++.+.++......|+.++-+.|--..
T Consensus 1439 ~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tI----N~REeeEKLNiWiA~lNlEn~yG~ee 1514 (1710)
T KOG1070|consen 1439 RAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTI----NFREEEEKLNIWIAYLNLENAYGTEE 1514 (1710)
T ss_pred cCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhC----CcchhHHHHHHHHHHHhHHHhhCcHH
Confidence 34455778899999999999999999999999999999999999999854 67665444444446666655443111
Q ss_pred -chh-hHHHHH------hhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 008246 464 -AHN-FFELVQ------QGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKY 535 (572)
Q Consensus 464 -~~~-~~~a~~------~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~ 535 (572)
.-+ |.+|.+ .+..+...|..-+++++|.++|+..++ .... -...|..+|..++..++-++|...
T Consensus 1515 sl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~K----KF~q----~~~vW~~y~~fLl~~ne~~aa~~l 1586 (1710)
T KOG1070|consen 1515 SLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLK----KFGQ----TRKVWIMYADFLLRQNEAEAAREL 1586 (1710)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHH----Hhcc----hhhHHHHHHHHHhcccHHHHHHHH
Confidence 001 233333 222344567788899999999999987 2221 225678899999999999999999
Q ss_pred HHHHHHhCCC--CHHHHH
Q 008246 536 LRLAAAHNPQ--YNELLE 551 (572)
Q Consensus 536 l~~aL~l~P~--~~~~l~ 551 (572)
+.+||+.-|. +.+++.
T Consensus 1587 L~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1587 LKRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred HHHHHhhcchhhhHHHHH
Confidence 9999999998 545444
No 219
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.15 E-value=0.061 Score=53.28 Aligned_cols=160 Identities=14% Similarity=0.171 Sum_probs=107.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH---HHHHHHHHHHHHc-----CC---HHHHHHHHHHHHHhh
Q 008246 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI---NALILMGQTQLQK-----GL---LEEAVEYLECAISKL 433 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~---~a~~~LG~l~~~~-----g~---~~eA~~~~~rAl~~l 433 (572)
.+....+.+.++..+...+++++|+...++-+++.|+++ .+++..|..++.. .| ..+|...|+..++.
T Consensus 67 s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r- 145 (254)
T COG4105 67 SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR- 145 (254)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH-
Confidence 345578899999999999999999999999999999885 5677888887532 22 45666666666654
Q ss_pred hhcCCCCChhhhhHHH-HHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhh
Q 008246 434 FLAGHPTEPEAIDLLI-VASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHY 512 (572)
Q Consensus 434 ~~~~~P~~~~~~~~~~-~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~ 512 (572)
.|+..=..+... ....+.+.+..+ ..-++-|.+.|.+..|+..++++++ ..|+. ..-
T Consensus 146 ----yPnS~Ya~dA~~~i~~~~d~LA~~E-------------m~IaryY~kr~~~~AA~nR~~~v~e----~y~~t-~~~ 203 (254)
T COG4105 146 ----YPNSRYAPDAKARIVKLNDALAGHE-------------MAIARYYLKRGAYVAAINRFEEVLE----NYPDT-SAV 203 (254)
T ss_pred ----CCCCcchhhHHHHHHHHHHHHHHHH-------------HHHHHHHHHhcChHHHHHHHHHHHh----ccccc-cch
Confidence 676641111110 011111111111 1123456777799999999999998 33322 233
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Q 008246 513 YDGLVVLASALCNVGRNAEAEKYLRLAAAHN-PQYNE 548 (572)
Q Consensus 513 ~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~-P~~~~ 548 (572)
.+++..+..+|..+|-.++|.+.- +.|..| |+...
T Consensus 204 ~eaL~~l~eaY~~lgl~~~a~~~~-~vl~~N~p~s~~ 239 (254)
T COG4105 204 REALARLEEAYYALGLTDEAKKTA-KVLGANYPDSQW 239 (254)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHH-HHHHhcCCCCcc
Confidence 478888999999999999998864 556665 55543
No 220
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.07 E-value=0.024 Score=59.01 Aligned_cols=134 Identities=14% Similarity=0.146 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
+......|..-+..|+|.+|++...++-+..+.-.-++..-+....++||++.|-.++.+|.+. .+++. .
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-----~~~~~----l- 153 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-----AGDDT----L- 153 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-----CCCch----H-
Confidence 3456778888899999999999999998888888888888889999999999999999999973 11211 1
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCC
Q 008246 449 IVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 528 (572)
Q Consensus 449 ~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~ 528 (572)
.........+..+| +++.|..-..++++ ..|.+. .++.....+|...|+
T Consensus 154 -~v~ltrarlll~~~----------------------d~~aA~~~v~~ll~----~~pr~~----~vlrLa~r~y~~~g~ 202 (400)
T COG3071 154 -AVELTRARLLLNRR----------------------DYPAARENVDQLLE----MTPRHP----EVLRLALRAYIRLGA 202 (400)
T ss_pred -HHHHHHHHHHHhCC----------------------CchhHHHHHHHHHH----hCcCCh----HHHHHHHHHHHHhcc
Confidence 12233455555555 99999999999999 344332 566677889999999
Q ss_pred HHHHHHHHHHHHHhC
Q 008246 529 NAEAEKYLRLAAAHN 543 (572)
Q Consensus 529 ~eeA~~~l~~aL~l~ 543 (572)
+.+..+.+.+.-+..
T Consensus 203 ~~~ll~~l~~L~ka~ 217 (400)
T COG3071 203 WQALLAILPKLRKAG 217 (400)
T ss_pred HHHHHHHHHHHHHcc
Confidence 999999888876654
No 221
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0011 Score=64.44 Aligned_cols=76 Identities=21% Similarity=0.140 Sum_probs=72.4
Q ss_pred hhhhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 357 AKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 357 ~~~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
.|.++|.+.|..+..+-+.|.++++..+++.+..-.++|++++|+.+.+++.+|....+...+++|+.++++|.++
T Consensus 32 ~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 32 CYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 4578999999988999999999999999999999999999999999999999999999999999999999999874
No 222
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.011 Score=60.21 Aligned_cols=131 Identities=11% Similarity=0.080 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~ 449 (572)
+.....+.....+|++.+|....++.|+..|.|--++..--.+++..|+.+.-...++|.+..- ++ +.+...
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~----dlp~~s 175 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NA----DLPCYS 175 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CC----CCcHHH
Confidence 3445556677788999999999999999999999999998999999999999999999888420 22 333443
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCH
Q 008246 450 VASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRN 529 (572)
Q Consensus 450 ~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~ 529 (572)
..+-.++..+.+.| -|++|++.-++++++ ++.+. .+...++.++...|++
T Consensus 176 Yv~GmyaFgL~E~g----------------------~y~dAEk~A~ralqi----N~~D~----Wa~Ha~aHVlem~~r~ 225 (491)
T KOG2610|consen 176 YVHGMYAFGLEECG----------------------IYDDAEKQADRALQI----NRFDC----WASHAKAHVLEMNGRH 225 (491)
T ss_pred HHHHHHHhhHHHhc----------------------cchhHHHHHHhhccC----CCcch----HHHHHHHHHHHhcchh
Confidence 44555667777777 666666666666663 22211 2333455555555555
Q ss_pred HHHHHHHHH
Q 008246 530 AEAEKYLRL 538 (572)
Q Consensus 530 eeA~~~l~~ 538 (572)
.|+.++..+
T Consensus 226 Keg~eFM~~ 234 (491)
T KOG2610|consen 226 KEGKEFMYK 234 (491)
T ss_pred hhHHHHHHh
Confidence 555555443
No 223
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.92 E-value=0.00051 Score=69.91 Aligned_cols=93 Identities=19% Similarity=0.224 Sum_probs=80.4
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHH
Q 008246 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (572)
Q Consensus 374 ~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~ 453 (572)
..|...+..|+++.|++.|..|++++|..+..|...|.+++..++...|+.-|..|+.+ +|+... .|-
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei-----n~Dsa~-------~yk 186 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI-----NPDSAK-------GYK 186 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc-----Cccccc-------ccc
Confidence 44667789999999999999999999999999999999999999999999999999986 555531 244
Q ss_pred HHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcC
Q 008246 454 WSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNL 500 (572)
Q Consensus 454 ~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l 500 (572)
+.|.+...+| ++++|...++.+.++
T Consensus 187 frg~A~rllg----------------------~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 187 FRGYAERLLG----------------------NWEEAAHDLALACKL 211 (377)
T ss_pred hhhHHHHHhh----------------------chHHHHHHHHHHHhc
Confidence 5688888888 889999988888884
No 224
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.85 E-value=0.0012 Score=70.16 Aligned_cols=102 Identities=21% Similarity=0.252 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~ 449 (572)
+.+-..|..++..++++.|+..|.+||+++|+++..+-+.+.++...+++-.|+.-+.+|++. +|. ..
T Consensus 5 ~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~-----dP~-------~~ 72 (476)
T KOG0376|consen 5 EELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL-----DPT-------YI 72 (476)
T ss_pred hhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc-----Cch-------hh
Confidence 344566777888899999999999999999999999999999999999999999999999984 332 34
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCC
Q 008246 450 VASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEP 506 (572)
Q Consensus 450 ~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp 506 (572)
.+|+..|.+....+ ++.+|...|++...+ .|.+|
T Consensus 73 K~Y~rrg~a~m~l~----------------------~~~~A~~~l~~~~~l-~Pnd~ 106 (476)
T KOG0376|consen 73 KAYVRRGTAVMALG----------------------EFKKALLDLEKVKKL-APNDP 106 (476)
T ss_pred heeeeccHHHHhHH----------------------HHHHHHHHHHHhhhc-CcCcH
Confidence 67778888888888 999999999999883 34444
No 225
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.011 Score=60.05 Aligned_cols=111 Identities=15% Similarity=0.115 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhh
Q 008246 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFV 482 (572)
Q Consensus 403 ~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~ 482 (572)
+.-+-.-|+-|+..++|..|.++|.+++.. .-. +++.....|.+.+.+....|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~-----kc~---D~dlnavLY~NRAAa~~~l~------------------- 133 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKK-----KCA---DPDLNAVLYTNRAAAQLYLG------------------- 133 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhh-----cCC---CccHHHHHHhhHHHHHHHHH-------------------
Confidence 455667799999999999999999999974 212 34455567888999999999
Q ss_pred hhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008246 483 SQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 551 (572)
Q Consensus 483 ~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~ 551 (572)
+|-.|+.-..+++. .+|.+. .+++.=|.|++++.++++|..+++..+..+-..+.+.+
T Consensus 134 ---NyRs~l~Dcs~al~----~~P~h~----Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~ 191 (390)
T KOG0551|consen 134 ---NYRSALNDCSAALK----LKPTHL----KAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIE 191 (390)
T ss_pred ---HHHHHHHHHHHHHh----cCcchh----hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 99999999999999 677654 44455789999999999999999998888766555444
No 226
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.76 E-value=0.0024 Score=42.64 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 514 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 514 ~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
+++..+|.++..+|++++|.++|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 457789999999999999999999999999964
No 227
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.72 E-value=0.03 Score=66.13 Aligned_cols=134 Identities=16% Similarity=0.096 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~ 450 (572)
.|..+...|...+.+++|.++|+..++.--+....|..+|..++++++-++|...+.||+.- -|... ...
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-----lPk~e-----Hv~ 1601 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS-----LPKQE-----HVE 1601 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-----cchhh-----hHH
Confidence 45677888888899999999999999999888999999999999999999999999999974 33321 112
Q ss_pred HHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHH
Q 008246 451 ASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNA 530 (572)
Q Consensus 451 a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~e 530 (572)
..-..+..-++.| +.+.+...|+-.+. .+|.-. +.|..+...-.+.|+.+
T Consensus 1602 ~IskfAqLEFk~G----------------------DaeRGRtlfEgll~----ayPKRt----DlW~VYid~eik~~~~~ 1651 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYG----------------------DAERGRTLFEGLLS----AYPKRT----DLWSVYIDMEIKHGDIK 1651 (1710)
T ss_pred HHHHHHHHHhhcC----------------------CchhhHHHHHHHHh----hCccch----hHHHHHHHHHHccCCHH
Confidence 2333466666777 88999999999988 566543 56667888888899999
Q ss_pred HHHHHHHHHHHhCC
Q 008246 531 EAEKYLRLAAAHNP 544 (572)
Q Consensus 531 eA~~~l~~aL~l~P 544 (572)
.++..|++++.+.=
T Consensus 1652 ~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1652 YVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999998873
No 228
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.01 Score=56.20 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~---~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~ 446 (572)
-..+.+|..+.+.|++++|+..++.++..--+. +-+-..||.+..++|++|+|+..+..... ..
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-------------~~ 156 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-------------ES 156 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-------------cc
Confidence 345788999999999999999999999643332 45667899999999999999999865442 22
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 447 LLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 447 ~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
.........|.++...| +-++|+..|+++++
T Consensus 157 w~~~~~elrGDill~kg----------------------~k~~Ar~ay~kAl~ 187 (207)
T COG2976 157 WAAIVAELRGDILLAKG----------------------DKQEARAAYEKALE 187 (207)
T ss_pred HHHHHHHHhhhHHHHcC----------------------chHHHHHHHHHHHH
Confidence 22223344577777777 99999999999998
No 229
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.022 Score=55.77 Aligned_cols=64 Identities=19% Similarity=0.049 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~------~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
+..|...+..+....++++|..++.+|.+-.-+| +.++-..|.+......+.|+.++|++|..+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4456666777778899999999999999766555 344445666777888999999999999874
No 230
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.68 E-value=0.0091 Score=61.31 Aligned_cols=147 Identities=16% Similarity=0.092 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~-----~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~ 443 (572)
-+++.+++..+...-++.+++.+-+..+.+-..++ .++..+|.++...+.+++++++|++|+... .+-.|+
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A---~~~~D~- 158 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYA---HNNDDA- 158 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHh---hccCCc-
Confidence 45677788877777888899999888887644333 788889999999999999999999999852 111111
Q ss_pred hhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCC--CchhhhhhHHHHHHHH
Q 008246 444 AIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEE--PKSKAHYYDGLVVLAS 521 (572)
Q Consensus 444 ~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~d--p~~~~~~~~al~~Lg~ 521 (572)
-..-..+..+|..+.+.. ++++|+-...+|.++..... .-+..+..-+++.++.
T Consensus 159 --~LElqvcv~Lgslf~~l~----------------------D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV 214 (518)
T KOG1941|consen 159 --MLELQVCVSLGSLFAQLK----------------------DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV 214 (518)
T ss_pred --eeeeehhhhHHHHHHHHH----------------------hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence 111125666788888888 99999999999887532111 1112223345678999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC
Q 008246 522 ALCNVGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 522 ~l~~~g~~eeA~~~l~~aL~l~ 543 (572)
+|..+|+.-+|.++.+++.++.
T Consensus 215 alR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHH
Confidence 9999999999999999997764
No 231
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.66 E-value=0.055 Score=55.22 Aligned_cols=142 Identities=15% Similarity=0.017 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQ-KGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~-~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~ 449 (572)
+|+.......+.+..++|...|++|++..+-....|...|.+-.. .++.+.|...|++++.. .|.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-----f~~~~------- 70 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-----FPSDP------- 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-----HTT-H-------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----CCCCH-------
Confidence 456666666677779999999999997777789999999999776 56666699999999985 34432
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCH
Q 008246 450 VASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRN 529 (572)
Q Consensus 450 ~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~ 529 (572)
..|.....-+...| +.+.|...|++++.. -+... ..-..|......-.+.|+.
T Consensus 71 ~~~~~Y~~~l~~~~----------------------d~~~aR~lfer~i~~----l~~~~-~~~~iw~~~i~fE~~~Gdl 123 (280)
T PF05843_consen 71 DFWLEYLDFLIKLN----------------------DINNARALFERAISS----LPKEK-QSKKIWKKFIEFESKYGDL 123 (280)
T ss_dssp HHHHHHHHHHHHTT-----------------------HHHHHHHHHHHCCT----SSCHH-HCHHHHHHHHHHHHHHS-H
T ss_pred HHHHHHHHHHHHhC----------------------cHHHHHHHHHHHHHh----cCchh-HHHHHHHHHHHHHHHcCCH
Confidence 12333445555666 999999999999983 22221 0112344456666778999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHH
Q 008246 530 AEAEKYLRLAAAHNPQYNELLE 551 (572)
Q Consensus 530 eeA~~~l~~aL~l~P~~~~~l~ 551 (572)
+...+.++++.+.-|+......
T Consensus 124 ~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 124 ESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHH
Confidence 9999999999999988554333
No 232
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.66 E-value=0.028 Score=51.06 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=41.6
Q ss_pred hhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 479 LSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 479 ~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~ 541 (572)
..+...|++++|+..+++++. .||.+. .++..+..+|...|+..+|.+.|++..+
T Consensus 70 ~~~~~~~~~~~a~~~~~~~l~----~dP~~E----~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 70 EALLEAGDYEEALRLLQRALA----LDPYDE----EAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH----HSTT-H----HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHh----cCCCCH----HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344556699999999999999 566554 3556689999999999999999988644
No 233
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.046 Score=54.22 Aligned_cols=83 Identities=20% Similarity=0.164 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHH----hcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 369 PKELIALSVKFL----SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 369 ~~~~~~lA~~~~----~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
-..+.++|..+. ..++..+|.-+|++.-++.|-.+.....++.++..+|++++|...++.|+.. +++++
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k-----d~~dp-- 241 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK-----DAKDP-- 241 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc-----cCCCH--
Confidence 344555666654 3456888999999999989999999999999999999999999999999974 44442
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q 008246 445 IDLLIVASQWSGVACIRQA 463 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g 463 (572)
....++-.+-...|
T Consensus 242 -----etL~Nliv~a~~~G 255 (299)
T KOG3081|consen 242 -----ETLANLIVLALHLG 255 (299)
T ss_pred -----HHHHHHHHHHHHhC
Confidence 45677777778888
No 234
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.59 E-value=0.16 Score=44.47 Aligned_cols=113 Identities=23% Similarity=0.217 Sum_probs=69.5
Q ss_pred HHHHHHHHH--HHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH---HHHHHHHHHHHHHhhchhhHHHHHhhhhhH
Q 008246 404 NALILMGQT--QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL---IVASQWSGVACIRQAAHNFFELVQQGQLKL 478 (572)
Q Consensus 404 ~a~~~LG~l--~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~---~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~ 478 (572)
.+|..|+.. .++.|-|++|...+++|.+. ...-|... ..|.. ...|.++..++..+|
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~--srtiP~eE-aFDh~GFDA~chA~Ls~A~~~Lg--------------- 69 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEV--SRTIPAEE-AFDHDGFDAFCHAGLSGALAGLG--------------- 69 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH--HTTS-TTS----HHHHHHHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hccCChHh-hcccccHHHHHHHHHHHHHHhhc---------------
Confidence 455555444 56789999999999999985 11223221 22221 224556666666777
Q ss_pred hhhhhhccHHHHHHHHHHHhcC---CCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 479 LSFVSQEKWEEGIAHLERIGNL---KEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 479 ~~~~~~g~~~eAi~~l~kal~l---~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~ 541 (572)
+|++++..-++++.. ..-.+.+....|..+....|.++...|+.+||...|+.+-+
T Consensus 70 -------ry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 70 -------RYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp --------HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 777777666666520 00022233445777888999999999999999999998754
No 235
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.57 E-value=0.0095 Score=54.23 Aligned_cols=64 Identities=28% Similarity=0.292 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
......++..+...|++++|+..+++++..||-+-.+|..+-.+|...|+..+|++.|++..+.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3456677888889999999999999999999999999999999999999999999999998864
No 236
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.57 E-value=0.034 Score=59.69 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=98.2
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCC---------------------C----CHHHHHHHHHHH
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEP---------------------D----NINALILMGQTQ 413 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP---------------------~----~~~a~~~LG~l~ 413 (572)
.+|++++|.-+++|+.+|.... ....+|+++|++|++... . ...+...||.+.
T Consensus 192 ~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCa 269 (539)
T PF04184_consen 192 KEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCA 269 (539)
T ss_pred HHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHH
Confidence 4577777776777777665433 335677777777776321 0 144567899999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHH
Q 008246 414 LQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAH 493 (572)
Q Consensus 414 ~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~ 493 (572)
.+.|+.+||++.++..++. +|.. + ....++++-.++...+ +|+|+...
T Consensus 270 rklGr~~EAIk~~rdLlke-----~p~~----~-~l~IrenLie~LLelq----------------------~Yad~q~l 317 (539)
T PF04184_consen 270 RKLGRLREAIKMFRDLLKE-----FPNL----D-NLNIRENLIEALLELQ----------------------AYADVQAL 317 (539)
T ss_pred HHhCChHHHHHHHHHHHhh-----CCcc----c-hhhHHHHHHHHHHhcC----------------------CHHHHHHH
Confidence 9999999999999888863 3322 1 1236777888888888 99999998
Q ss_pred HHHHhcCCCCCCCchhhhhhHHHHHHHHHH---------HHcCC---HHHHHHHHHHHHHhCCCCHHHHH
Q 008246 494 LERIGNLKEPEEPKSKAHYYDGLVVLASAL---------CNVGR---NAEAEKYLRLAAAHNPQYNELLE 551 (572)
Q Consensus 494 l~kal~l~~p~dp~~~~~~~~al~~Lg~~l---------~~~g~---~eeA~~~l~~aL~l~P~~~~~l~ 551 (572)
+.+--+. .-|++....+.+-+..+..- .+.|- -..|.+..++|++.||....++-
T Consensus 318 L~kYdDi---~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 318 LAKYDDI---SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHhccc---cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 8885432 12444332222211222211 11110 12467899999999998776554
No 237
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.083 Score=51.51 Aligned_cols=146 Identities=16% Similarity=0.073 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhh----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNK----EPD--NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~----dP~--~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~ 443 (572)
+.+..-|..+.-..+++.|-..|.+|-+. +.. .+..+...+.+ ++.++.++|+.++++|+++.
T Consensus 35 dl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c-ykk~~~~eAv~cL~~aieIy---------- 103 (288)
T KOG1586|consen 35 ELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC-YKKVDPEEAVNCLEKAIEIY---------- 103 (288)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-hhccChHHHHHHHHHHHHHH----------
Confidence 44555566666678888888777777543 222 23445555555 45569999999999999851
Q ss_pred hhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhh-hccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHH
Q 008246 444 AIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVS-QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA 522 (572)
Q Consensus 444 ~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~-~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~ 522 (572)
...| +|..+.......+..|.. ..++++|+.+|+++.+.-..+.- . ......++-.|..
T Consensus 104 ----------------t~~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees-~-ssANKC~lKvA~y 163 (288)
T KOG1586|consen 104 ----------------TDMG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES-V-SSANKCLLKVAQY 163 (288)
T ss_pred ----------------Hhhh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh-h-hhHHHHHHHHHHH
Confidence 1111 011111111111222222 24889999999998762111111 1 1112344556777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 523 LCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 523 l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
-.+.|+|.+|++.|++..+..-++
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 778899999999999987765443
No 238
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.53 E-value=0.052 Score=57.73 Aligned_cols=151 Identities=15% Similarity=0.064 Sum_probs=90.7
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHh-hchhhHH
Q 008246 391 LLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ-AAHNFFE 469 (572)
Q Consensus 391 ~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~-g~~~~~~ 469 (572)
-|++-++.||-|.++|+.+-.+-...|+.++-.+.|++|+.. .|...+....-...|.|+-.+++.. ...+...
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-----vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-----VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-----CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 488899999999999999999999999999999999999972 2222111111111233333222211 1111111
Q ss_pred HHHhhhh------------------hHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHH
Q 008246 470 LVQQGQL------------------KLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAE 531 (572)
Q Consensus 470 a~~~~~~------------------~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~ee 531 (572)
.-+.... .+.--..+.+...|.+.+-.|+- .-|.+. .+.. ...+-.+++++|.
T Consensus 385 tr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG----~cPK~K--lFk~---YIelElqL~efDR 455 (677)
T KOG1915|consen 385 TRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG----KCPKDK--LFKG---YIELELQLREFDR 455 (677)
T ss_pred HHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc----cCCchh--HHHH---HHHHHHHHhhHHH
Confidence 1111100 01112345667777777777776 456542 2222 3344556778888
Q ss_pred HHHHHHHHHHhCCCCHHHHHhccc
Q 008246 532 AEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 532 A~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
....|++.|+.+|.+...+.....
T Consensus 456 cRkLYEkfle~~Pe~c~~W~kyaE 479 (677)
T KOG1915|consen 456 CRKLYEKFLEFSPENCYAWSKYAE 479 (677)
T ss_pred HHHHHHHHHhcChHhhHHHHHHHH
Confidence 888888888888887777666555
No 239
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.51 E-value=0.25 Score=56.43 Aligned_cols=172 Identities=19% Similarity=0.115 Sum_probs=109.2
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 363 SVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 363 ~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
.-+|....+....|..+.+.|+.++|..+++..-..-++|...+-.+-.+|.+.|++|+|..+|++|+.. +|..
T Consensus 37 kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~-----~P~e- 110 (932)
T KOG2053|consen 37 KKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK-----YPSE- 110 (932)
T ss_pred HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-----CCcH-
Confidence 4556677788888999999999999998888877788889999999999999999999999999999975 6662
Q ss_pred hhhhHHHHHH--------------------------HHHHHHHHHhhchhhHH------------HH-------------
Q 008246 443 EAIDLLIVAS--------------------------QWSGVACIRQAAHNFFE------------LV------------- 471 (572)
Q Consensus 443 ~~~~~~~~a~--------------------------~~lG~~~~~~g~~~~~~------------a~------------- 471 (572)
+..-.+-.+| +|-......++.....+ .+
T Consensus 111 ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~ 190 (932)
T KOG2053|consen 111 ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESE 190 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchH
Confidence 1211111111 11111111111100000 00
Q ss_pred HhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 472 QQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 472 ~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
+...+...++..+|+++||.+.+..-+.- ..+.. .......-+..+...+++.+-.+...++++.++++
T Consensus 191 aE~~Lyl~iL~~~~k~~eal~~l~~~la~---~l~~~---~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 191 AEIILYLLILELQGKYQEALEFLAITLAE---KLTSA---NLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHH---hcccc---chHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 00001122355688899999988433320 11111 11122345677888899999999999999999884
No 240
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.04 Score=54.00 Aligned_cols=101 Identities=18% Similarity=0.128 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHh--------hCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALN--------KEPDNI----------NALILMGQTQLQKGLLEEAVEYLECAI 430 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~--------~dP~~~----------~a~~~LG~l~~~~g~~~eA~~~~~rAl 430 (572)
...+.+.|..++..|++.+|...|+.|+. ..|.++ ..+.++.++++..|+|-+++++....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999975 235444 456788999999999999999999999
Q ss_pred HhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCc
Q 008246 431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPK 507 (572)
Q Consensus 431 ~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~ 507 (572)
.. +|.+ ..|++..|.++...= +.+||.+.|.++++ .||.
T Consensus 258 ~~-----~~~n-------vKA~frRakAhaa~W----------------------n~~eA~~D~~~vL~----ldps 296 (329)
T KOG0545|consen 258 RH-----HPGN-------VKAYFRRAKAHAAVW----------------------NEAEAKADLQKVLE----LDPS 296 (329)
T ss_pred hc-----CCch-------HHHHHHHHHHHHhhc----------------------CHHHHHHHHHHHHh----cChh
Confidence 74 4443 356777777776666 88999999999999 5664
No 241
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.017 Score=57.89 Aligned_cols=130 Identities=15% Similarity=0.185 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEP--DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP--~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~ 447 (572)
+.+-..+.+.++.+++..+..+.++ -| ++++...+.|.+.++.|++++|++-|+.|++. ....
T Consensus 113 ~~lqLqaAIkYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv-----sGyq------ 177 (459)
T KOG4340|consen 113 RVLQLQAAIKYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV-----SGYQ------ 177 (459)
T ss_pred HHHHHHHHHhcccccCcchHHHHHh----ccCCCccchhccchheeeccccHHHHHHHHHHHHhh-----cCCC------
Confidence 3344445666678888888666554 34 67888999999999999999999999999874 1111
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCch-------------------
Q 008246 448 LIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKS------------------- 508 (572)
Q Consensus 448 ~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~------------------- 508 (572)
....++++.++++.| +++.|+++....++..-.+.|..
T Consensus 178 -pllAYniALaHy~~~----------------------qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~ 234 (459)
T KOG4340|consen 178 -PLLAYNLALAHYSSR----------------------QYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLV 234 (459)
T ss_pred -chhHHHHHHHHHhhh----------------------hHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHH
Confidence 123577888888888 88888887766664111122221
Q ss_pred --hhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 008246 509 --KAHYYDGLVVLASALCNVGRNAEAEKYLR 537 (572)
Q Consensus 509 --~~~~~~al~~Lg~~l~~~g~~eeA~~~l~ 537 (572)
.....+++...+.++++.|+++.|.+.+.
T Consensus 235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred HHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 11234566778899999999999987663
No 242
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.36 E-value=0.045 Score=57.63 Aligned_cols=148 Identities=16% Similarity=0.127 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHh---cCCcccHHHHHHH-HHhhCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhhhh
Q 008246 369 PKELIALSVKFLS---KGDKERPIPLLQL-ALNKEPDNINALILMGQTQLQ---------KGLLEEAVEYLECAISKLFL 435 (572)
Q Consensus 369 ~~~~~~lA~~~~~---~g~~~~A~~~l~~-AL~~dP~~~~a~~~LG~l~~~---------~g~~~eA~~~~~rAl~~l~~ 435 (572)
+...+..|..+.+ .|+.++|+..+.. ....++.+++.+..+|.+|-. ....++|+++|+++.+.
T Consensus 179 ~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--- 255 (374)
T PF13281_consen 179 HNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--- 255 (374)
T ss_pred hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC---
Confidence 4456677777777 8999999999999 566678889999999999842 23478999999999974
Q ss_pred cCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHh-cCCCCCCCchhhhhhH
Q 008246 436 AGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIG-NLKEPEEPKSKAHYYD 514 (572)
Q Consensus 436 ~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal-~l~~p~dp~~~~~~~~ 514 (572)
+|+.- .-.|++..+...|. ++....+.. +-...+...+ + ..-.++. ..+.
T Consensus 256 --~~~~Y--------~GIN~AtLL~~~g~-~~~~~~el~--------------~i~~~l~~llg~-kg~~~~~---~dYW 306 (374)
T PF13281_consen 256 --EPDYY--------SGINAATLLMLAGH-DFETSEELR--------------KIGVKLSSLLGR-KGSLEKM---QDYW 306 (374)
T ss_pred --Ccccc--------chHHHHHHHHHcCC-cccchHHHH--------------HHHHHHHHHHHh-hcccccc---ccHH
Confidence 33221 11334455555551 111000000 0000000101 1 0001111 1223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 515 GLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 515 al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
.+..++.+..-.|++++|.++++++++++|..=+
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 4566788888899999999999999999987533
No 243
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.27 E-value=0.059 Score=57.33 Aligned_cols=164 Identities=18% Similarity=0.075 Sum_probs=113.1
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
+..|.-.-++...++.-|.--.++++++.|...+++||..|-.+...|...+.+-.+.+...-|...+.||+.++
T Consensus 63 Ed~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l----- 137 (677)
T KOG1915|consen 63 EDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL----- 137 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-----
Confidence 445555555666777788888899999999999999999999999999999999999999999999999999862
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhh---------hhhHhhhh----hhccHHHHHHHHHHHhcCCCCCC
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQG---------QLKLLSFV----SQEKWEEGIAHLERIGNLKEPEE 505 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~---------~~~~~~~~----~~g~~~eAi~~l~kal~l~~p~d 505 (572)
|.- + ..|+..-..-..+| +...+-+.. +..=.+|+ ...+.+.|...|++-+- -+
T Consensus 138 PRV----d---qlWyKY~ymEE~Lg--Ni~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~----~H 204 (677)
T KOG1915|consen 138 PRV----D---QLWYKYIYMEEMLG--NIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL----VH 204 (677)
T ss_pred chH----H---HHHHHHHHHHHHhc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe----ec
Confidence 321 1 12333222223333 221111111 11112222 34567888888888876 34
Q ss_pred CchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008246 506 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 506 p~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~ 545 (572)
|+. ..++..+..-.+.|+.+-|...|++|++.--+
T Consensus 205 P~v-----~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 205 PKV-----SNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred ccH-----HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 532 34556788888888888888989888876554
No 244
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.26 E-value=0.0083 Score=40.92 Aligned_cols=28 Identities=39% Similarity=0.488 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 405 ALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 405 a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
++..||.+|...|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999998763
No 245
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.24 E-value=0.0045 Score=41.25 Aligned_cols=29 Identities=38% Similarity=0.432 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 404 NALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 404 ~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
++|+.+|.+|...|++++|.++|++++++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46666777777777777777777777664
No 246
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.14 E-value=0.0093 Score=40.68 Aligned_cols=29 Identities=24% Similarity=0.181 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008246 515 GLVVLASALCNVGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 515 al~~Lg~~l~~~g~~eeA~~~l~~aL~l~ 543 (572)
++.+||.+|.+.|++++|+++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35679999999999999999999966543
No 247
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.09 E-value=0.0098 Score=39.09 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 515 GLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 515 al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
+++.+|.++.+.|++++|.+.|+++++..|+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56789999999999999999999999999974
No 248
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.07 E-value=0.0051 Score=41.51 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=27.5
Q ss_pred HHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHH
Q 008246 493 HLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEK 534 (572)
Q Consensus 493 ~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~ 534 (572)
+|+++++ .+|++. .++.+||.+|...|++++|++
T Consensus 1 ~y~kAie----~~P~n~----~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIE----LNPNNA----EAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHH----HCCCCH----HHHHHHHHHHHHCcCHHhhcC
Confidence 3788999 566654 567789999999999999973
No 249
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.01 E-value=0.12 Score=58.96 Aligned_cols=128 Identities=20% Similarity=0.215 Sum_probs=94.2
Q ss_pred HHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHH
Q 008246 376 SVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWS 455 (572)
Q Consensus 376 A~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~l 455 (572)
....+..+++.+|.+...+.++..|+..-|...-|..+.+.|+.++|..+++ ++..+ .++|. .....+
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~----~~~D~-------~tLq~l 83 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGL----KGTDD-------LTLQFL 83 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccC----CCCch-------HHHHHH
Confidence 4455778999999999999999999999999999999999999999998885 44321 22221 234556
Q ss_pred HHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 008246 456 GVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKY 535 (572)
Q Consensus 456 G~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~ 535 (572)
-.+|.++| ++++|..+|+++.. .+|. . +-++.+-.+|.+.+.|.+=.+.
T Consensus 84 ~~~y~d~~----------------------~~d~~~~~Ye~~~~----~~P~-e----ell~~lFmayvR~~~yk~qQka 132 (932)
T KOG2053|consen 84 QNVYRDLG----------------------KLDEAVHLYERANQ----KYPS-E----ELLYHLFMAYVREKSYKKQQKA 132 (932)
T ss_pred HHHHHHHh----------------------hhhHHHHHHHHHHh----hCCc-H----HHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888 99999999999999 6775 2 3344466677777777664444
Q ss_pred HHHHHHhCCCC
Q 008246 536 LRLAAAHNPQY 546 (572)
Q Consensus 536 l~~aL~l~P~~ 546 (572)
--+.-+.-|+.
T Consensus 133 a~~LyK~~pk~ 143 (932)
T KOG2053|consen 133 ALQLYKNFPKR 143 (932)
T ss_pred HHHHHHhCCcc
Confidence 44444455553
No 250
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.94 E-value=0.022 Score=42.60 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 515 GLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 515 al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
-++.+|..+.++|+|++|..+.+.+|+.+|++.++...-+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 34668999999999999999999999999999887665544
No 251
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.94 E-value=0.19 Score=43.91 Aligned_cols=104 Identities=15% Similarity=0.106 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008246 373 IALSVKFLSKGDKERPIPLLQLALNKEPD------------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL~~dP~------------~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~ 440 (572)
+..|...+..|.|++|...+++|.+..-. |+-.|-.|+..+...|+|++++..-++|+.-.-..|.-+
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 34466778899999999999999986532 356777899999999999999999999986210011111
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 441 EPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 441 ~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
.. .-...+.+.+..+.++...| +.+||+..|+.+-+
T Consensus 93 qd-eGklWIaaVfsra~Al~~~G----------------------r~~eA~~~fr~agE 128 (144)
T PF12968_consen 93 QD-EGKLWIAAVFSRAVALEGLG----------------------RKEEALKEFRMAGE 128 (144)
T ss_dssp ST-HHHHHHHHHHHHHHHHHHTT-----------------------HHHHHHHHHHHHH
T ss_pred cc-cchhHHHHHHHHHHHHHhcC----------------------ChHHHHHHHHHHHH
Confidence 11 11222334445555555555 99999999998876
No 252
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.94 E-value=0.015 Score=58.54 Aligned_cols=67 Identities=24% Similarity=0.256 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
.....|......|+.++|..+|+.|++++|++++++..+|......++.-+|-.||-+|+.+ +|.+.
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti-----sP~ns 184 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI-----SPGNS 184 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee-----CCCch
Confidence 34566777788999999999999999999999999999999999999999999999999986 66654
No 253
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.89 E-value=0.55 Score=49.15 Aligned_cols=63 Identities=24% Similarity=0.195 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN-ALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~-a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
|-.++..+...+..|++++|.+-|+..+. ||+--. .+-.|=.-..+.|+.+.|..|-++|..+
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~ 183 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK 183 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh
Confidence 55677778888889999999999987765 554321 1112222235789999999999999875
No 254
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.85 E-value=0.26 Score=51.32 Aligned_cols=162 Identities=17% Similarity=0.160 Sum_probs=105.9
Q ss_pred hhhccccCCCCHHHHHHHHHHHHhcCC------------cccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008246 358 KQLKISVENLTPKELIALSVKFLSKGD------------KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEY 425 (572)
Q Consensus 358 ~~~ai~~~~~~~~~~~~lA~~~~~~g~------------~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~ 425 (572)
.++.+.-+|.|.+.++.++...-..-. .+.-+.+|++||+.+|++...+..+=....+..+.++..+-
T Consensus 8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~ 87 (321)
T PF08424_consen 8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK 87 (321)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 356788888899999888766544322 34557899999999999999999998999999999999999
Q ss_pred HHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCC---C
Q 008246 426 LECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLK---E 502 (572)
Q Consensus 426 ~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~---~ 502 (572)
+++++.. +|++. ..|.+.+...++...-+... .-..-|.+++..+.....-. .
T Consensus 88 we~~l~~-----~~~~~---------~LW~~yL~~~q~~~~~f~v~----------~~~~~y~~~l~~L~~~~~~~~~~~ 143 (321)
T PF08424_consen 88 WEELLFK-----NPGSP---------ELWREYLDFRQSNFASFTVS----------DVRDVYEKCLRALSRRRSGRMTSH 143 (321)
T ss_pred HHHHHHH-----CCCCh---------HHHHHHHHHHHHHhccCcHH----------HHHHHHHHHHHHHHHhhccccccc
Confidence 9999974 55543 23444444444411100000 00113444444444443310 0
Q ss_pred CCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008246 503 PEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 503 p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~ 543 (572)
+.-+.........+..+...+.+.|..+.|...++..++.+
T Consensus 144 ~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 144 PDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 00111122344556778888999999999999999999987
No 255
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.81 E-value=0.43 Score=52.81 Aligned_cols=167 Identities=12% Similarity=0.076 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh-
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPD----NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE- 443 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~----~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~- 443 (572)
...++..|..|...|+.+.|...|++|++.+=. -+.+|..-|..-++..+++.|..+.++|.. -|..+.
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~------vP~~~~~ 460 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH------VPTNPEL 460 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc------CCCchhh
Confidence 346789999999999999999999999997633 378999999999999999999999999996 354421
Q ss_pred -hh----hHHHH------HHHHHHHHHHHhhchh-----hHHHHHhhhh-------hHhhhhhhccHHHHHHHHHHHhcC
Q 008246 444 -AI----DLLIV------ASQWSGVACIRQAAHN-----FFELVQQGQL-------KLLSFVSQEKWEEGIAHLERIGNL 500 (572)
Q Consensus 444 -~~----~~~~~------a~~~lG~~~~~~g~~~-----~~~a~~~~~~-------~~~~~~~~g~~~eAi~~l~kal~l 500 (572)
.. +.-.+ .|..++......|-.+ +...+++... .+..+.++.-+++|.+.|++-+.|
T Consensus 461 ~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 461 EYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred hhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 00 00000 1222233333333111 1111222111 112234466679999999999986
Q ss_pred CCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008246 501 KEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 544 (572)
Q Consensus 501 ~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P 544 (572)
= .-|...+ ....++.....-+..-+.+.|+..|++||+.-|
T Consensus 541 F--k~p~v~d-iW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 541 F--KWPNVYD-IWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred C--CCccHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 3 1232222 223344444444445578999999999999776
No 256
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.72 E-value=0.018 Score=61.39 Aligned_cols=106 Identities=13% Similarity=0.143 Sum_probs=84.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccH
Q 008246 408 LMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKW 487 (572)
Q Consensus 408 ~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~ 487 (572)
.-|.-.+.-++++.|+..|.+|+++ +|+.. ..+.+.+.++.+.+ ++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~l-----dpnca-------~~~anRa~a~lK~e----------------------~~ 54 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIEL-----DPNCA-------IYFANRALAHLKVE----------------------SF 54 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhc-----CCcce-------eeechhhhhheeec----------------------hh
Confidence 3456677889999999999999986 66654 11233456777777 99
Q ss_pred HHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 488 EEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 488 ~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
..|+.-+.+|++ .+|... .+++..|.+....+++.+|...|+....+.|+...+...+..
T Consensus 55 ~~Al~Da~kaie----~dP~~~----K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 55 GGALHDALKAIE----LDPTYI----KAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred hhHHHHHHhhhh----cCchhh----heeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 999999999999 567544 455568999999999999999999999999998876665444
No 257
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.66 E-value=0.05 Score=58.02 Aligned_cols=157 Identities=13% Similarity=0.047 Sum_probs=109.2
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008246 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~ 445 (572)
....+........+++..+...+....+.+.-..-+.+.+.+..++.++..|++.+|.+.+...=- ...|.....+
T Consensus 203 ~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni----~~~~g~~~T~ 278 (696)
T KOG2471|consen 203 DLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNI----HKEAGGTITP 278 (696)
T ss_pred ccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhccc----ccccCccccc
Confidence 334444555555667778888888888999988889999999999999999999999998854321 1111110011
Q ss_pred hHH-HHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc-----CCCCCCCc-----hhhhhhH
Q 008246 446 DLL-IVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN-----LKEPEEPK-----SKAHYYD 514 (572)
Q Consensus 446 ~~~-~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~-----l~~p~dp~-----~~~~~~~ 514 (572)
... -..+.++|.++++.| .|.-+..+|.+|++ |.....|. +.....+
T Consensus 279 q~~~cif~NNlGcIh~~~~----------------------~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~e 336 (696)
T KOG2471|consen 279 QLSSCIFNNNLGCIHYQLG----------------------CYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSME 336 (696)
T ss_pred hhhhheeecCcceEeeehh----------------------hHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchh
Confidence 111 125688999999999 88888888888884 11111111 1112346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 515 GLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 515 al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
.+++.|..|...||.-+|.++|.++....-.+..
T Consensus 337 ilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr 370 (696)
T KOG2471|consen 337 ILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR 370 (696)
T ss_pred hHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH
Confidence 7889999999999999999999999876544443
No 258
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.57 E-value=0.24 Score=54.71 Aligned_cols=160 Identities=13% Similarity=0.100 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCC---CCHHHHHHHHH-----HHHHcC-------------CHHHHHHHHHH
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEP---DNINALILMGQ-----TQLQKG-------------LLEEAVEYLEC 428 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP---~~~~a~~~LG~-----l~~~~g-------------~~~eA~~~~~r 428 (572)
..++-+|.-|.+.|++++|...|+++++.-- +...++-..+. +....+ +.+-....|+.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 4568899999999999999999999998532 22222222211 111111 12223333444
Q ss_pred HHHh-------hhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchh-----hHHHHHh-hh------------hhHhhhhh
Q 008246 429 AISK-------LFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHN-----FFELVQQ-GQ------------LKLLSFVS 483 (572)
Q Consensus 429 Al~~-------l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~-----~~~a~~~-~~------------~~~~~~~~ 483 (572)
.+.. ..+..+|++- ..|.-.+-+..|+.. +.+|+.. ++ ..+..|..
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV---------~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNV---------EEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHhccchHHHHHHHhcCCccH---------HHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHh
Confidence 3321 0123455543 223333334444111 2333211 11 11233555
Q ss_pred hccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 484 QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 484 ~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l 542 (572)
.|+.++|...|+++.+.. .+ ........|..-|..-....+++.|.+..++|...
T Consensus 400 ~~~l~~aRvifeka~~V~---y~-~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVP---YK-TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred cCcHHHHHHHHHHhhcCC---cc-chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 668889999999988731 22 22334456667777777888888888888887654
No 259
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=0.19 Score=51.45 Aligned_cols=58 Identities=12% Similarity=-0.066 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008246 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI 430 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl 430 (572)
=..|..+.+-|.+++|++..++|+++||.|.-+...++.++...|+++|+.+..++--
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 3455566677888888888888888888888888888888888888888888776543
No 260
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.30 E-value=0.017 Score=37.89 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 404 NALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 404 ~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
++++.+|.++...|++++|.+.|++.++.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35666666666666666666666666653
No 261
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=95.26 E-value=0.67 Score=47.47 Aligned_cols=157 Identities=13% Similarity=0.069 Sum_probs=91.4
Q ss_pred hhhhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q 008246 357 AKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436 (572)
Q Consensus 357 ~~~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~ 436 (572)
.|+.-..-|......-++.-....+..+..+-++....||++||+.+.|+..|+.- +.--..+|+..+++|++..
T Consensus 172 DHQtfFtCd~D~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~--- 246 (556)
T KOG3807|consen 172 DHQTFFTCDTDFLRPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAG--- 246 (556)
T ss_pred cccceeeccccccChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHH---
Confidence 33334433443333445555666788888889999999999999999999988753 3344778999999998731
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHHHhh-------chhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchh
Q 008246 437 GHPTEPEAIDLLIVASQWSGVACIRQA-------AHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSK 509 (572)
Q Consensus 437 ~~P~~~~~~~~~~~a~~~lG~~~~~~g-------~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~ 509 (572)
+. -++........| +.+.--.+.....++-|-.++|+..||++.++...+ +.|-.
T Consensus 247 -------e~------~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~k----e~pl~- 308 (556)
T KOG3807|consen 247 -------ET------IYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMK----EFPLL- 308 (556)
T ss_pred -------HH------HHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh----hccHH-
Confidence 00 011111111111 000000111122234456678899999999999887 55532
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 008246 510 AHYYDGLVVLASALCNVGRNAEAEKYLR 537 (572)
Q Consensus 510 ~~~~~al~~Lg~~l~~~g~~eeA~~~l~ 537 (572)
...+.+-+|-.++.+..-|.+....+-
T Consensus 309 -t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 309 -TMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444555555555555555444443
No 262
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.26 E-value=0.032 Score=35.05 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 515 GLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 515 al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
++..+|.++...|++++|..+++++++.+|++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 45679999999999999999999999998863
No 263
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.38 Score=49.33 Aligned_cols=97 Identities=12% Similarity=0.081 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~----~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
++.+-..|..|+...+|..|+.+|.++|+..-.| +..|.+.+-+.+..|+|..|+.-..+|+.+ +|++.
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~-----~P~h~-- 153 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL-----KPTHL-- 153 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-----Ccchh--
Confidence 5667788999999999999999999999987665 455678899999999999999999999975 55553
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
-+++.-+.|++++. ++++|..+.+..+.
T Consensus 154 -----Ka~~R~Akc~~eLe----------------------~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 154 -----KAYIRGAKCLLELE----------------------RFAEAVNWCEEGLQ 181 (390)
T ss_pred -----hhhhhhhHHHHHHH----------------------HHHHHHHHHhhhhh
Confidence 45677788888888 88888888877766
No 264
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.11 E-value=0.52 Score=43.66 Aligned_cols=82 Identities=18% Similarity=0.176 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~ 449 (572)
..++.........++.++++..+...--+.|+.++....-|.++..+|++++|+..++.+.+. .|..+
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~-----~~~~p------- 78 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER-----APGFP------- 78 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-----CCCCh-------
Confidence 456777888888999999999999999999999999999999999999999999999887652 33332
Q ss_pred HHHHHHHHHHHHhh
Q 008246 450 VASQWSGVACIRQA 463 (572)
Q Consensus 450 ~a~~~lG~~~~~~g 463 (572)
.+...++.|+..+|
T Consensus 79 ~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 79 YAKALLALCLYALG 92 (160)
T ss_pred HHHHHHHHHHHHcC
Confidence 23445677777777
No 265
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.08 E-value=0.85 Score=47.44 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEP----DNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP----~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
....++..+..+...|+++.|...+.++...++ ..+.+.+..+.++...|+.++|+..++..+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356789999999999999999999999998662 2578889999999999999999999998886
No 266
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.07 E-value=0.45 Score=50.41 Aligned_cols=156 Identities=21% Similarity=0.197 Sum_probs=92.8
Q ss_pred cccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhh--------------C------------CCC---HHHHHHHHHH
Q 008246 362 ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNK--------------E------------PDN---INALILMGQT 412 (572)
Q Consensus 362 i~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~--------------d------------P~~---~~a~~~LG~l 412 (572)
+...|.+.+.+++++..+..+|+.+.|.+++++||-. + ++| ..+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 4666777788888888888888888887777777531 1 222 2344455566
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhhcCCCC-ChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHH
Q 008246 413 QLQKGLLEEAVEYLECAISKLFLAGHPT-EPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGI 491 (572)
Q Consensus 413 ~~~~g~~~eA~~~~~rAl~~l~~~~~P~-~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi 491 (572)
+.++|-+..|.++.+-.+.+ +|. |+ . .+.+.+-....+.+ +|+--+
T Consensus 113 L~~RG~~rTAlE~~KlLlsL-----dp~~DP-----~-g~ll~ID~~ALrs~----------------------~y~~Li 159 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSL-----DPDEDP-----L-GVLLFIDYYALRSR----------------------QYQWLI 159 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhc-----CCCCCc-----c-hhHHHHHHHHHhcC----------------------CHHHHH
Confidence 77788888888888666664 555 32 1 12333333334444 555455
Q ss_pred HHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCCCHH-HHHhc
Q 008246 492 AHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRN---------------AEAEKYLRLAAAHNPQYNE-LLEQL 553 (572)
Q Consensus 492 ~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~---------------eeA~~~l~~aL~l~P~~~~-~l~~l 553 (572)
+.++..... ..........+.-+..+.++...++. ++|.+.+++|+...|.... +++.+
T Consensus 160 ~~~~~~~~~---~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~~l 234 (360)
T PF04910_consen 160 DFSESPLAK---CYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLDKL 234 (360)
T ss_pred HHHHhHhhh---hhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 554443320 00000000112234577788888888 8999999999999997543 44444
No 267
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.07 E-value=0.66 Score=47.25 Aligned_cols=138 Identities=17% Similarity=0.127 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhc----CCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhcCCCC
Q 008246 369 PKELIALSVKFLSK----GDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHPT 440 (572)
Q Consensus 369 ~~~~~~lA~~~~~~----g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~----~g~~~eA~~~~~rAl~~l~~~~~P~ 440 (572)
+.....++..+... .+..+|..+|+ ...+..++.+.+.||.+|.. ..|..+|..+|++|.+. |++.
T Consensus 73 ~~a~~~l~~~y~~g~gv~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~----g~~~ 146 (292)
T COG0790 73 AAALALLGQMYGAGKGVSRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL----GNVE 146 (292)
T ss_pred hHHHHHHHHHHHhccCccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc----CChh
Confidence 36778888887653 34667999999 44557899999999999987 55999999999999973 2221
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHH
Q 008246 441 EPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA 520 (572)
Q Consensus 441 ~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg 520 (572)
. ..+.+.+|..+..-. .. ..+ ..+...|...|+++.... + .++...+|
T Consensus 147 a-------~~~~~~l~~~~~~g~-~~--~~~------------~~~~~~A~~~~~~aa~~~---~-------~~a~~~lg 194 (292)
T COG0790 147 A-------ALAMYRLGLAYLSGL-QA--LAV------------AYDDKKALYLYRKAAELG---N-------PDAQLLLG 194 (292)
T ss_pred H-------HHHHHHHHHHHHcCh-hh--hcc------------cHHHHhHHHHHHHHHHhc---C-------HHHHHHHH
Confidence 1 122455555554431 00 000 002246777777766621 1 13445566
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHhCC
Q 008246 521 SALCN----VGRNAEAEKYLRLAAAHNP 544 (572)
Q Consensus 521 ~~l~~----~g~~eeA~~~l~~aL~l~P 544 (572)
.+|.. ..++++|..+|+++.+...
T Consensus 195 ~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 195 RMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 66544 2366677777777766654
No 268
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=0.51 Score=50.59 Aligned_cols=195 Identities=18% Similarity=0.129 Sum_probs=123.9
Q ss_pred hhhhhHHHHHhh-hHHHHHHHHHHcCHHHHhhhCCCCCCCCCCCCCCccccccccccCCchhhhccccCCCC--------
Q 008246 298 IPQGSLVYWVTN-SSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLT-------- 368 (572)
Q Consensus 298 ~Pagl~lYWi~s-~~~sl~Q~~~lr~~~~r~~lgip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~~~-------- 368 (572)
-|+...+=|+.. .+..++|-...++..+...+..-.+.. +.+ +. . ..+++..++.
T Consensus 259 sps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~t---De~---i~--q--------~eklkq~d~~srilsm~k 322 (629)
T KOG2300|consen 259 SPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYT---DEA---IK--Q--------TEKLKQADLMSRILSMFK 322 (629)
T ss_pred CCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHH---HHH---HH--H--------HhhcccccchhHHHHHHH
Confidence 478888899998 889999988888665544443221110 000 00 0 0111222211
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhh---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNK---EPD-------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~---dP~-------~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
...+-..+.+-.-.|++.+|++....+.+. .|. .+..++.+|.-...-|.+++|+.+|..|.++.
T Consensus 323 m~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t----- 397 (629)
T KOG2300|consen 323 MILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT----- 397 (629)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh-----
Confidence 112234455666789999999888877664 444 46678899999999999999999999999751
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCch--h-hhhhHH
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKS--K-AHYYDG 515 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~--~-~~~~~a 515 (572)
+..+.......+++..|.+.| +-++--+ ++++-.|.+... . ..-..+
T Consensus 398 ----~~~dl~a~~nlnlAi~YL~~~----------------------~~ed~y~----~ld~i~p~nt~s~ssq~l~a~~ 447 (629)
T KOG2300|consen 398 ----ESIDLQAFCNLNLAISYLRIG----------------------DAEDLYK----ALDLIGPLNTNSLSSQRLEASI 447 (629)
T ss_pred ----hHHHHHHHHHHhHHHHHHHhc----------------------cHHHHHH----HHHhcCCCCCCcchHHHHHHHH
Confidence 133333345667788888888 5444333 333222332211 1 112235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008246 516 LVVLASALCNVGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 516 l~~Lg~~l~~~g~~eeA~~~l~~aL~l~ 543 (572)
++..|...+.++++.||...+++.++..
T Consensus 448 ~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 448 LYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 5678888999999999999999999877
No 269
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.03 E-value=0.13 Score=52.42 Aligned_cols=72 Identities=17% Similarity=0.116 Sum_probs=58.7
Q ss_pred ccccCCCCHHHHHHHHHHHHh-cCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 361 KISVENLTPKELIALSVKFLS-KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 361 ai~~~~~~~~~~~~lA~~~~~-~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
+..-...+.+.|...|..... .++.+.|...|+++++..|++.+.|......+...|+.+.|...|++++..
T Consensus 27 a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 27 ARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISS 99 (280)
T ss_dssp HHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT
T ss_pred HHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 444445567788999998777 555556999999999999999999999999999999999999999999963
No 270
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.88 E-value=0.29 Score=40.92 Aligned_cols=45 Identities=29% Similarity=0.412 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 388 PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 388 A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
.+..++++++.+|+|.++.+.+|..+...|++++|++.+-+.++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999999999999998863
No 271
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.86 E-value=0.15 Score=55.89 Aligned_cols=92 Identities=12% Similarity=0.012 Sum_probs=70.5
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q 008246 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN----INALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436 (572)
Q Consensus 361 ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~----~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~ 436 (572)
.....|..+--++..|..+..+|+.++|++.|++++....+- .-.++.+|.++..+++|++|.++|.+..+.
T Consensus 259 ~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~---- 334 (468)
T PF10300_consen 259 MLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE---- 334 (468)
T ss_pred HHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc----
Confidence 334556677888999999999999999999999999644433 356678999999999999999999998862
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHHHhh
Q 008246 437 GHPTEPEAIDLLIVASQWSGVACIRQA 463 (572)
Q Consensus 437 ~~P~~~~~~~~~~~a~~~lG~~~~~~g 463 (572)
+ .. ....-.|..|.++...|
T Consensus 335 -s-----~W-Ska~Y~Y~~a~c~~~l~ 354 (468)
T PF10300_consen 335 -S-----KW-SKAFYAYLAAACLLMLG 354 (468)
T ss_pred -c-----cc-HHHHHHHHHHHHHHhhc
Confidence 1 11 11123455688888888
No 272
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.82 E-value=0.31 Score=46.21 Aligned_cols=105 Identities=18% Similarity=-0.034 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhh
Q 008246 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFV 482 (572)
Q Consensus 403 ~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~ 482 (572)
-.++..+|..|.+.|+.++|+++|.++.+. -. ........+...-.+....+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~------~~---~~~~~id~~l~~irv~i~~~------------------- 87 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDY------CT---SPGHKIDMCLNVIRVAIFFG------------------- 87 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhh------cC---CHHHHHHHHHHHHHHHHHhC-------------------
Confidence 478889999999999999999999998862 11 11122223344444445555
Q ss_pred hhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008246 483 SQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 540 (572)
Q Consensus 483 ~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL 540 (572)
+++....++.++-.+. ..+.+..........-|..+...++|.+|...|-.+.
T Consensus 88 ---d~~~v~~~i~ka~~~~--~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 88 ---DWSHVEKYIEKAESLI--EKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred ---CHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 8888888888887643 2233232222334556778888999999998886654
No 273
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.75 E-value=0.7 Score=45.58 Aligned_cols=89 Identities=11% Similarity=-0.037 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhh
Q 008246 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQ 484 (572)
Q Consensus 405 a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~ 484 (572)
.+..-+..|...+++++|..++++|+.- .-++. ..-....++...+....+.. .+.|+++..+.....|.+.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-----yEnnr-slfhAAKayEqaamLake~~--klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-----YENNR-SLFHAAKAYEQAAMLAKELS--KLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-----HHhcc-cHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHh
Confidence 3444467788899999999999999952 11110 00001112233333333332 3455555555555555555
Q ss_pred ccHHHHHHHHHHHhcCC
Q 008246 485 EKWEEGIAHLERIGNLK 501 (572)
Q Consensus 485 g~~~eAi~~l~kal~l~ 501 (572)
|..+.|...++++.++.
T Consensus 105 GspdtAAmaleKAak~l 121 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKAL 121 (308)
T ss_pred CCcchHHHHHHHHHHHh
Confidence 55555555555555433
No 274
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.74 E-value=2.1 Score=40.21 Aligned_cols=134 Identities=13% Similarity=0.124 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN--INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~--~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
..|..|..+.+.|..++|...|...-+..-.+ .-+.+..|.+..+.|+.++|+.+|..+-. +...|+...
T Consensus 60 d~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~------dt~~P~~~r-- 131 (221)
T COG4649 60 DAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA------DTSIPQIGR-- 131 (221)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc------cCCCcchhh--
Confidence 34677888889999999999998877766555 35677889999999999999999988775 212121110
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCC
Q 008246 449 IVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 528 (572)
Q Consensus 449 ~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~ 528 (572)
..+....+..+...| -|++-....+.... +.+|-- ..+.-.||.+-.+.|+
T Consensus 132 d~ARlraa~lLvD~g----------------------sy~dV~srvepLa~---d~n~mR----~sArEALglAa~kagd 182 (221)
T COG4649 132 DLARLRAAYLLVDNG----------------------SYDDVSSRVEPLAG---DGNPMR----HSAREALGLAAYKAGD 182 (221)
T ss_pred HHHHHHHHHHHhccc----------------------cHHHHHHHhhhccC---CCChhH----HHHHHHHhHHHHhccc
Confidence 123444455555555 88876665554432 233321 1245568999999999
Q ss_pred HHHHHHHHHHHHH
Q 008246 529 NAEAEKYLRLAAA 541 (572)
Q Consensus 529 ~eeA~~~l~~aL~ 541 (572)
+.+|.++|++...
T Consensus 183 ~a~A~~~F~qia~ 195 (221)
T COG4649 183 FAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHHHHc
Confidence 9999999998766
No 275
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.68 E-value=0.14 Score=55.79 Aligned_cols=120 Identities=13% Similarity=0.032 Sum_probs=76.1
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhH
Q 008246 389 IPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFF 468 (572)
Q Consensus 389 ~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~ 468 (572)
...+..+++.+|.++..|..-+..+..+|+..+|..|+.+|+-. .|...++ .+..-+|.++.+.|
T Consensus 199 ~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf-----~~~h~kd-----i~lLSlaTiL~RaG----- 263 (886)
T KOG4507|consen 199 GHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHF-----SSRHNKD-----IALLSLATVLHRAG----- 263 (886)
T ss_pred HHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhh-----CCccccc-----chhhhHHHHHHHcc-----
Confidence 34556777778877777777666677788888888888887753 2222111 23455677777777
Q ss_pred HHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 469 ELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 469 ~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
...+|--.+..|+. +.+..... ++.+|.++..+|.+.....+|..+.+.+|.+..
T Consensus 264 -----------------~sadA~iILhAA~~----dA~~~t~n----~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 264 -----------------FSADAAVILHAALD----DADFFTSN----YYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred -----------------cccchhheeehhcc----CCcccccc----ceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence 66666666665555 22221222 234777777777777777777777777776543
No 276
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.61 E-value=0.091 Score=39.33 Aligned_cols=43 Identities=26% Similarity=0.238 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT 412 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l 412 (572)
+-++.+|..+...|++++|.++.+.+|+.+|+|..+......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 3568889999999999999999999999999998887665544
No 277
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.51 E-value=0.034 Score=34.92 Aligned_cols=27 Identities=41% Similarity=0.566 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 405 ALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 405 a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
+++.+|.++...|++++|..+|+++++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455555555555666666655555554
No 278
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.30 E-value=0.29 Score=39.57 Aligned_cols=63 Identities=16% Similarity=0.292 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHH---HHHHcCCHHHHHHHHHHHHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQ---TQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~---l~~~~g~~~eA~~~~~rAl~ 431 (572)
+...++.|..++++.+.++|+..++++|+..++..+-+..||. +|...|++.+.+++-.+=++
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999888887775 46788899888888766555
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.28 E-value=0.44 Score=45.14 Aligned_cols=103 Identities=16% Similarity=0.109 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~---~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~ 445 (572)
-..+..+|..|.+-|+.++|.+.|.++.+..-.. .+.++.+-.+....|++.....+..+|-..+ ....+.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~------~~~~d~ 109 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI------EKGGDW 109 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH------hccchH
Confidence 3578899999999999999999999988865332 4677788888999999999999999998742 111122
Q ss_pred hHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 446 DLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 446 ~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
+.........|..+...+ +|.+|.+.|-.+..
T Consensus 110 ~~~nrlk~~~gL~~l~~r----------------------~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 110 ERRNRLKVYEGLANLAQR----------------------DFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHHHHHHhc----------------------hHHHHHHHHHccCc
Confidence 222223344466666666 99999998877764
No 280
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.04 E-value=0.058 Score=52.38 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=52.4
Q ss_pred HHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 377 ~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
....+.|+.+.|.+.|.+|+++.|+....|+.+|......|+++.|.+.|++.+++
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 34567899999999999999999999999999999999999999999999999985
No 281
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.93 E-value=1.2 Score=47.78 Aligned_cols=144 Identities=15% Similarity=0.083 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCC-CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh--
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEP-DN--INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP-- 442 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP-~~--~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~-- 442 (572)
.+..++.+|.-...-|.++.|+..|..|.++-- .+ +-+..++|..|.+.|+-+.-- ++++.+ .|.+.
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y----~~ld~i----~p~nt~s 437 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLY----KALDLI----GPLNTNS 437 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHH----HHHHhc----CCCCCCc
Confidence 466788999999999999999999999998743 33 334457899999988765433 444432 23221
Q ss_pred -hhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHH
Q 008246 443 -EAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAS 521 (572)
Q Consensus 443 -~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~ 521 (572)
...-....+++..|.-.+.++ ++.||...+++.++..+.+| ......-.+..||.
T Consensus 438 ~ssq~l~a~~~~v~glfaf~qn----------------------~lnEaK~~l~e~Lkmanaed--~~rL~a~~LvLLs~ 493 (629)
T KOG2300|consen 438 LSSQRLEASILYVYGLFAFKQN----------------------DLNEAKRFLRETLKMANAED--LNRLTACSLVLLSH 493 (629)
T ss_pred chHHHHHHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHhhcchhh--HHHHHHHHHHHHHH
Confidence 000111224555566666666 99999999999998542222 22222335678999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC
Q 008246 522 ALCNVGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 522 ~l~~~g~~eeA~~~l~~aL~l~ 543 (572)
+....|+..|+.+..+-++.+.
T Consensus 494 v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 494 VFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred HHHHhcchHHHHhccchHHHHH
Confidence 9999999999999999888775
No 282
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.93 E-value=0.13 Score=35.48 Aligned_cols=30 Identities=33% Similarity=0.335 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 403 INALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 403 ~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
+.++.++|.+|..+|++++|+.++++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 467889999999999999999999999974
No 283
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.79 E-value=2.5 Score=42.91 Aligned_cols=142 Identities=12% Similarity=0.033 Sum_probs=99.3
Q ss_pred ccCCCCHHHHHHHHHHHHh----cCCcccHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHH
Q 008246 363 SVENLTPKELIALSVKFLS----KGDKERPIPLLQLALNKEPDN-INALILMGQTQLQKG-------LLEEAVEYLECAI 430 (572)
Q Consensus 363 ~~~~~~~~~~~~lA~~~~~----~g~~~~A~~~l~~AL~~dP~~-~~a~~~LG~l~~~~g-------~~~eA~~~~~rAl 430 (572)
..+...+...+.+|..+.. ..+..+|..+|++|.+..-.. ..+.+.+|..|..-+ +...|..+|++|.
T Consensus 103 ~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa 182 (292)
T COG0790 103 AAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAA 182 (292)
T ss_pred HhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHH
Confidence 3445567888999999987 448889999999999975443 355889999887752 2337999999988
Q ss_pred HhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhh
Q 008246 431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKA 510 (572)
Q Consensus 431 ~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~ 510 (572)
.. + ...+...+|..|..-. --..++++|..+|+++.+.. +
T Consensus 183 ~~----~----------~~~a~~~lg~~y~~G~------------------Gv~~d~~~A~~wy~~Aa~~g---~----- 222 (292)
T COG0790 183 EL----G----------NPDAQLLLGRMYEKGL------------------GVPRDLKKAFRWYKKAAEQG---D----- 222 (292)
T ss_pred Hh----c----------CHHHHHHHHHHHHcCC------------------CCCcCHHHHHHHHHHHHHCC---C-----
Confidence 63 1 1234566775554321 11228899999999999832 2
Q ss_pred hhhHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHhCCCCH
Q 008246 511 HYYDGLVVLASALCNVG---------------RNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 511 ~~~~al~~Lg~~l~~~g---------------~~eeA~~~l~~aL~l~P~~~ 547 (572)
..+...++ ++...| +...|..++.++....+...
T Consensus 223 --~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 223 --GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNA 271 (292)
T ss_pred --HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhH
Confidence 14556677 666666 77888888888877765543
No 284
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.64 E-value=2.4 Score=48.82 Aligned_cols=167 Identities=17% Similarity=0.060 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN-----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~-----~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~ 443 (572)
++.....|......|+.++|++..+.++..=|.+ ..+...+|.+..-+|++++|..+.+++.+... -.+
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~----~~~-- 531 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMAR----QHD-- 531 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH----Hcc--
Confidence 5566777889999999999999999999998876 46777899999999999999999999987410 000
Q ss_pred hhhHHHHHHHHHHHHHHHhhchhhHHHH------Hhh----------hh--hHhhhhhhccHHHHHHHHHHHhcCCCCCC
Q 008246 444 AIDLLIVASQWSGVACIRQAAHNFFELV------QQG----------QL--KLLSFVSQEKWEEGIAHLERIGNLKEPEE 505 (572)
Q Consensus 444 ~~~~~~~a~~~lG~~~~~~g~~~~~~a~------~~~----------~~--~~~~~~~~g~~~eAi~~l~kal~l~~p~d 505 (572)
.......+......++..+|+-.+.+.. +.- .. ++..+...-+++++.....+.+++..-.-
T Consensus 532 ~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~ 611 (894)
T COG2909 532 VYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT 611 (894)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc
Confidence 1111112333446666777732221110 000 00 11122223346666666665555322222
Q ss_pred CchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 506 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 506 p~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l 542 (572)
|.....+ -++.+|+.++...|++++|...+++...+
T Consensus 612 ~~~~~~~-~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 612 PQPLLSR-LALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred cchhHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 2222112 23358999999999999999999887655
No 285
>PRK10941 hypothetical protein; Provisional
Probab=93.64 E-value=0.2 Score=50.78 Aligned_cols=69 Identities=17% Similarity=0.177 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
...+-++-..+.+.++++.|.++.+..+.++|+++.-+...|.+|.+.|.+..|..-++.-++. .|+++
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~-----~P~dp 249 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ-----CPEDP 249 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-----CCCch
Confidence 3445667778899999999999999999999999999999999999999999999999999985 67665
No 286
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.62 E-value=0.22 Score=56.26 Aligned_cols=28 Identities=29% Similarity=0.211 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 515 GLVVLASALCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 515 al~~Lg~~l~~~g~~eeA~~~l~~aL~l 542 (572)
+.+.||..|...|+..+|..+|.+|-..
T Consensus 969 AcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 969 ACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 4566899999999999999998887554
No 287
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.50 E-value=0.92 Score=50.94 Aligned_cols=135 Identities=20% Similarity=0.109 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCCcccHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHH
Q 008246 366 NLTPKELIALSVKFLS-----KGDKERPIPLLQLALN-----KEPDNINALILMGQTQLQKG-----LLEEAVEYLECAI 430 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~-----~g~~~~A~~~l~~AL~-----~dP~~~~a~~~LG~l~~~~g-----~~~eA~~~~~rAl 430 (572)
..+....+.+|.++.. ..|.+.|+.+|+.+.+ ..-.++.+.+.+|.+|.+.. +.+.|..+|.+|.
T Consensus 241 ~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA 320 (552)
T KOG1550|consen 241 LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA 320 (552)
T ss_pred hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 3455666777777664 3688889999999977 11226778999999998854 7788999999999
Q ss_pred HhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhh
Q 008246 431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKA 510 (572)
Q Consensus 431 ~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~ 510 (572)
+. ++| .+.+.+|.++.... ...++..|.++|..|.+. .
T Consensus 321 ~~----g~~----------~a~~~lg~~~~~g~-------------------~~~d~~~A~~yy~~Aa~~---G------ 358 (552)
T KOG1550|consen 321 EL----GNP----------DAQYLLGVLYETGT-------------------KERDYRRAFEYYSLAAKA---G------ 358 (552)
T ss_pred hc----CCc----------hHHHHHHHHHHcCC-------------------ccccHHHHHHHHHHHHHc---C------
Confidence 73 222 24566777654332 112566777777777652 1
Q ss_pred hhhHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhC
Q 008246 511 HYYDGLVVLASALCNV----GRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 511 ~~~~al~~Lg~~l~~~----g~~eeA~~~l~~aL~l~ 543 (572)
+..+.+.+|.+|..- -+.+.|..+|+++.+.+
T Consensus 359 -~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 359 -HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred -ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 224555566666532 35667777777777776
No 288
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.37 E-value=1.3 Score=40.38 Aligned_cols=61 Identities=20% Similarity=0.182 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
.+.+.....+..++.++++..+...--+-|+.++....-|.++...|++++|+..+++..+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 4556666677789999999999999999999999999999999999999999999988775
No 289
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.35 E-value=0.36 Score=48.89 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=53.1
Q ss_pred cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 486 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 486 ~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
+.++|...|+.|+++ +|++. +++...|......++.-+|-.+|-+||.++|.+.+++-+-.+
T Consensus 131 k~ekA~~lfeHAlal----aP~~p----~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 131 KLEKAMTLFEHALAL----APTNP----QILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred chHHHHHHHHHHHhc----CCCCH----HHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 999999999999994 45433 677789999999999999999999999999999987765544
No 290
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.27 E-value=1.1 Score=44.69 Aligned_cols=103 Identities=17% Similarity=0.245 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHh----hC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALN----KE--PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~----~d--P~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~ 441 (572)
+|...-.+|....+-||.+.|..++++.-+ +| -++..++.+.+.+|.-.+++.+|...|.+.+.. +|.+
T Consensus 211 ~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~-----D~~~ 285 (366)
T KOG2796|consen 211 EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM-----DPRN 285 (366)
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcccc-----CCCc
Confidence 456677889999999999999999994433 32 234567778889999999999999999988864 5554
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCch
Q 008246 442 PEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKS 508 (572)
Q Consensus 442 ~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~ 508 (572)
+ .+.++.+.|+...| +..+|++.++.+.+ .+|..
T Consensus 286 ~-------~a~NnKALcllYlg----------------------~l~DAiK~~e~~~~----~~P~~ 319 (366)
T KOG2796|consen 286 A-------VANNNKALCLLYLG----------------------KLKDALKQLEAMVQ----QDPRH 319 (366)
T ss_pred h-------hhhchHHHHHHHHH----------------------HHHHHHHHHHHHhc----cCCcc
Confidence 4 34456788888899 99999999999988 56653
No 291
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.22 E-value=0.18 Score=34.70 Aligned_cols=30 Identities=33% Similarity=0.241 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008246 514 DGLVVLASALCNVGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 514 ~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~ 543 (572)
.++.++|.+|...|++++|+.+++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 356789999999999999999999998853
No 292
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.22 E-value=0.71 Score=45.17 Aligned_cols=93 Identities=16% Similarity=0.098 Sum_probs=60.3
Q ss_pred cCCcccHHHHHHHHHhh----CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh----hhcCCCCChhhhhHHHH
Q 008246 382 KGDKERPIPLLQLALNK----EPD---NINALILMGQTQLQKGLLEEAVEYLECAISKL----FLAGHPTEPEAIDLLIV 450 (572)
Q Consensus 382 ~g~~~~A~~~l~~AL~~----dP~---~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l----~~~~~P~~~~~~~~~~~ 450 (572)
...+++|++.|.-|+-. ..+ -+..+..+|++|...|+.++...++++|+... .....|....+ + ..
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~-~--~~ 166 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD-E--AT 166 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch-H--HH
Confidence 44566677766666542 222 26778899999999999655555555554321 01223332211 1 23
Q ss_pred HHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 451 ASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 451 a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
..+.+|....+.| ++++|+.+|.+++.
T Consensus 167 l~YLigeL~rrlg----------------------~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 167 LLYLIGELNRRLG----------------------NYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHHhC----------------------CHHHHHHHHHHHHc
Confidence 5677899999999 99999999999998
No 293
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.20 E-value=1.5 Score=46.13 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=48.4
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 374 ~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
..+...+ .-+...|...-.++++++|+...+-..-+..+++.|+..++-..++.+...
T Consensus 235 AkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 235 AKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred HHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 3343333 345778899999999999999999999999999999999999999999973
No 294
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.15 E-value=1.2 Score=47.23 Aligned_cols=140 Identities=20% Similarity=0.217 Sum_probs=94.5
Q ss_pred cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhhhhc
Q 008246 364 VENLTPKELIALSVKFLSKGDKERPIPLLQLALNK----EPDNINALILMGQTQLQ---KGLLEEAVEYLECAISKLFLA 436 (572)
Q Consensus 364 ~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~----dP~~~~a~~~LG~l~~~---~g~~~eA~~~~~rAl~~l~~~ 436 (572)
++.++++....+=..|..-.+|+.-+++.+..-.. -++.....+.+|.++.+ .|+.++|++.+..++..
T Consensus 136 ~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~---- 211 (374)
T PF13281_consen 136 PELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES---- 211 (374)
T ss_pred HhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc----
Confidence 45667777788777888889999998888877766 66788888999999999 99999999999997752
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHH
Q 008246 437 GHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL 516 (572)
Q Consensus 437 ~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al 516 (572)
..+.++ ..+...|.+|...= .+. .+......++|+++|+++-++ +|+ ++ .-
T Consensus 212 ~~~~~~-------d~~gL~GRIyKD~~----~~s---------~~~d~~~ldkAi~~Y~kgFe~----~~~----~Y-~G 262 (374)
T PF13281_consen 212 DENPDP-------DTLGLLGRIYKDLF----LES---------NFTDRESLDKAIEWYRKGFEI----EPD----YY-SG 262 (374)
T ss_pred cCCCCh-------HHHHHHHHHHHHHH----HHc---------CccchHHHHHHHHHHHHHHcC----Ccc----cc-ch
Confidence 122222 23444566664432 000 011122479999999999994 332 22 23
Q ss_pred HHHHHHHHHcCCHHHHHHHH
Q 008246 517 VVLASALCNVGRNAEAEKYL 536 (572)
Q Consensus 517 ~~Lg~~l~~~g~~eeA~~~l 536 (572)
.|++.++...|...+...-+
T Consensus 263 IN~AtLL~~~g~~~~~~~el 282 (374)
T PF13281_consen 263 INAATLLMLAGHDFETSEEL 282 (374)
T ss_pred HHHHHHHHHcCCcccchHHH
Confidence 56777777777655544333
No 295
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.02 E-value=0.28 Score=41.03 Aligned_cols=72 Identities=15% Similarity=0.060 Sum_probs=54.9
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN--INALILMGQTQLQKGLLEEAVEYLECAI 430 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~--~~a~~~LG~l~~~~g~~~eA~~~~~rAl 430 (572)
..++..+|.|.+..+.+|..+...|++++|++.+-+.++.|+++ ..+.-.+=.++...|.-+.-...|+|-+
T Consensus 12 ~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 12 EAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 46778889999999999999999999999999999999999877 6666666667777777666666665544
No 296
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.85 E-value=0.41 Score=40.21 Aligned_cols=56 Identities=25% Similarity=0.267 Sum_probs=45.6
Q ss_pred HHHHhcCCcccHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 377 VKFLSKGDKERPIPLLQLALNKEPD---------NINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 377 ~~~~~~g~~~~A~~~l~~AL~~dP~---------~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
....+.|++.+|.+.+.+....... ...+...+|.++...|++++|+..+++|+++
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4457889999998777777664322 2467888999999999999999999999985
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.83 E-value=1.6 Score=40.53 Aligned_cols=100 Identities=21% Similarity=0.358 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhh
Q 008246 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFV 482 (572)
Q Consensus 403 ~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~ 482 (572)
..+++....+-.+.++.++++..+ .|++.+ .|..+ .. ...-|..+...|
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL-~ALrvL----RP~~~-e~------~~~~~~l~i~r~------------------- 58 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALL-DALRVL----RPEFP-EL------DLFDGWLHIVRG------------------- 58 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHH-HHHHHh----CCCch-HH------HHHHHHHHHHhC-------------------
Confidence 456777788888999999999999 455544 77765 22 234688888888
Q ss_pred hhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008246 483 SQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 483 ~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~ 545 (572)
++++|+..|+.+.+ ..|... + +..+++.|+..+|+.+ =..+-+++++..++
T Consensus 59 ---~w~dA~rlLr~l~~----~~~~~p--~--~kALlA~CL~~~~D~~-Wr~~A~evle~~~d 109 (160)
T PF09613_consen 59 ---DWDDALRLLRELEE----RAPGFP--Y--AKALLALCLYALGDPS-WRRYADEVLESGAD 109 (160)
T ss_pred ---CHHHHHHHHHHHhc----cCCCCh--H--HHHHHHHHHHHcCChH-HHHHHHHHHhcCCC
Confidence 99999999999877 333322 2 3345888998888764 23444556665543
No 298
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.81 E-value=1.1 Score=40.15 Aligned_cols=61 Identities=21% Similarity=0.322 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 008246 486 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 552 (572)
Q Consensus 486 ~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~ 552 (572)
+..+.+..++..++ . .+|.... +-++.||..+++.|+|++|+.+.+..++.+|++.++.+.
T Consensus 50 dv~~GI~iLe~l~~-~--~~~~~rR---e~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 50 DVQEGIVILEDLLK-S--AHPERRR---ECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHhHHHHHHHhh-h--cCcccch---hhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 66788999999986 2 2333222 334678999999999999999999999999999876554
No 299
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.77 E-value=1.2 Score=43.63 Aligned_cols=58 Identities=10% Similarity=0.098 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 487 WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 487 ~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
+..|++.|+++.+-. ..|..........+.+|.+..+.|++++|..+|.+++...-..
T Consensus 141 l~~Al~~y~~a~~~e--~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 141 LRKALEFYEEAYENE--DFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHHHHhC--cCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 578899999998722 2333322234567889999999999999999999998865433
No 300
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.63 E-value=1.2 Score=38.68 Aligned_cols=57 Identities=12% Similarity=0.233 Sum_probs=42.7
Q ss_pred HHHHHHhcCCcccHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHH
Q 008246 375 LSVKFLSKGDKERPIPLLQLALNKEPDNI---NALILMGQTQLQKGL-----------LEEAVEYLECAIS 431 (572)
Q Consensus 375 lA~~~~~~g~~~~A~~~l~~AL~~dP~~~---~a~~~LG~l~~~~g~-----------~~eA~~~~~rAl~ 431 (572)
+|..++++||+-+|++..+..+...+++. -.+..-|.++.+... .-.|+++|.++..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~ 72 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE 72 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc
Confidence 57788999999999999999999999887 456666777654332 2345666666665
No 301
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=92.62 E-value=0.81 Score=51.99 Aligned_cols=127 Identities=21% Similarity=0.178 Sum_probs=67.3
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhh
Q 008246 388 PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNF 467 (572)
Q Consensus 388 A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~ 467 (572)
..+.+++|.+ ||++.++. .|-+..+.|-.++|+..|++--+ .|. +-..|...| ..
T Consensus 788 gaRAlR~a~q-~~~e~eak--vAvLAieLgMlEeA~~lYr~ckR-------------~DL-------lNKlyQs~g--~w 842 (1416)
T KOG3617|consen 788 GARALRRAQQ-NGEEDEAK--VAVLAIELGMLEEALILYRQCKR-------------YDL-------LNKLYQSQG--MW 842 (1416)
T ss_pred hHHHHHHHHh-CCcchhhH--HHHHHHHHhhHHHHHHHHHHHHH-------------HHH-------HHHHHHhcc--cH
Confidence 3466677766 34433433 34566677777777777776653 111 223333333 22
Q ss_pred HHHHHhhhhhHh------------hhhhhccHHHHHHHHHHHhc--------CCCCCCCchhhhhh------HHHHHHHH
Q 008246 468 FELVQQGQLKLL------------SFVSQEKWEEGIAHLERIGN--------LKEPEEPKSKAHYY------DGLVVLAS 521 (572)
Q Consensus 468 ~~a~~~~~~~~~------------~~~~~g~~~eAi~~l~kal~--------l~~p~dp~~~~~~~------~al~~Lg~ 521 (572)
.+|.+..+...+ -+...++.+.|+++|+|+-. |. ++|...+.|. ..+..-|.
T Consensus 843 ~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~--e~p~~~e~Yv~~~~d~~L~~WWgq 920 (1416)
T KOG3617|consen 843 SEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK--EYPKQIEQYVRRKRDESLYSWWGQ 920 (1416)
T ss_pred HHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH--hChHHHHHHHHhccchHHHHHHHH
Confidence 233332222111 12234567777777776521 00 2333322221 12345688
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 008246 522 ALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 522 ~l~~~g~~eeA~~~l~~aL~ 541 (572)
-+...|+.|.|+.+|..|-.
T Consensus 921 YlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 921 YLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHhcccchHHHHHHHHHhhh
Confidence 88889999999999988644
No 302
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.58 E-value=3.7 Score=41.76 Aligned_cols=121 Identities=21% Similarity=0.137 Sum_probs=72.1
Q ss_pred HHhcCCcccHHHHHHHHHhhC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhh-c-CCCCChhhhhH
Q 008246 379 FLSKGDKERPIPLLQLALNKE----PDN----INALILMGQTQLQKG-LLEEAVEYLECAISKLFL-A-GHPTEPEAIDL 447 (572)
Q Consensus 379 ~~~~g~~~~A~~~l~~AL~~d----P~~----~~a~~~LG~l~~~~g-~~~eA~~~~~rAl~~l~~-~-~~P~~~~~~~~ 447 (572)
...+||++.|+.++.|+-... |+. ++..|+.|.-....+ ++++|..++++|.+++.. . .....++..+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457899999999999986654 443 466778888888999 999999999999986311 0 01111111122
Q ss_pred HHHHHHHHHHHHHHhhchhhHH-HHH--------------hhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 448 LIVASQWSGVACIRQAAHNFFE-LVQ--------------QGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 448 ~~~a~~~lG~~~~~~g~~~~~~-a~~--------------~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
.......++.++...+..+..+ +.. ..-++...+...++.+++.+.+.+++.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 2224555566666666433211 111 111122334445566777777777766
No 303
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.50 E-value=0.27 Score=52.71 Aligned_cols=115 Identities=13% Similarity=0.085 Sum_probs=82.6
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCcccHHHHHHH-HHhhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 008246 363 SVENLTPKELIALSVKFLSKGDKERPIPLLQL-ALNKEPD--------NINALILMGQTQLQKGLLEEAVEYLECAISK- 432 (572)
Q Consensus 363 ~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~-AL~~dP~--------~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~- 432 (572)
.+...++..++..+..++..|++..|.+.+.. -+...|. .--.|.+||.++++.|.|.-+..+|.+|++-
T Consensus 234 n~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~ 313 (696)
T KOG2471|consen 234 NIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNS 313 (696)
T ss_pred hhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHH
Confidence 33445678899999999999999999887765 3555555 3346789999999999999999999999951
Q ss_pred ---hh--hcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 433 ---LF--LAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 433 ---l~--~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
+. +.+.|...-..+--....|+.|..+...| +.-+|.++|.++..
T Consensus 314 c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~g----------------------rPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 314 CSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSG----------------------RPLLAFQCFQKAVH 363 (696)
T ss_pred HHHHhccCCCCcceehhcccchhhHHhhhHHHHhcC----------------------CcHHHHHHHHHHHH
Confidence 10 01111110001111235788899999999 99999999988886
No 304
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.41 E-value=0.97 Score=48.46 Aligned_cols=62 Identities=19% Similarity=0.130 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
+.-..........|+.-.|-+-+..+|+..|.++.-....+.+....|+|+.|...+.-+-.
T Consensus 290 ~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~ 351 (831)
T PRK15180 290 REITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEK 351 (831)
T ss_pred hHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhh
Confidence 34445556677899999999999999999999999999999999999999999988765543
No 305
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.39 E-value=1.9 Score=44.84 Aligned_cols=131 Identities=15% Similarity=0.130 Sum_probs=87.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhH
Q 008246 399 EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKL 478 (572)
Q Consensus 399 dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~ 478 (572)
..+....|...+.+....|+++.|...+.++... ++... ... ....+..+..+...|
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~-----~~~~~-~~~--~~v~~e~akllw~~g--------------- 198 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQL-----NPSSE-SLL--PRVFLEYAKLLWAQG--------------- 198 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhcc-----CCccc-CCC--cchHHHHHHHHHHcC---------------
Confidence 6677889999999999999999999999998863 21111 101 112233455555555
Q ss_pred hhhhhhccHHHHHHHHHHHhc-C-CCC------------------------CCCchhhhhhHHHHHHHHHHHHc------
Q 008246 479 LSFVSQEKWEEGIAHLERIGN-L-KEP------------------------EEPKSKAHYYDGLVVLASALCNV------ 526 (572)
Q Consensus 479 ~~~~~~g~~~eAi~~l~kal~-l-~~p------------------------~dp~~~~~~~~al~~Lg~~l~~~------ 526 (572)
+.++|+..++..++ . ... .+........+++..+|......
T Consensus 199 -------~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~ 271 (352)
T PF02259_consen 199 -------EQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSS 271 (352)
T ss_pred -------CHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhcccccc
Confidence 66667666666654 0 000 01111122345677788888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHhccccchH
Q 008246 527 GRNAEAEKYLRLAAAHNPQYNELLEQLENNDEE 559 (572)
Q Consensus 527 g~~eeA~~~l~~aL~l~P~~~~~l~~l~~~~~~ 559 (572)
+..+++.+.|+++++.+|+....+..+.....+
T Consensus 272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 999999999999999999988777666654433
No 306
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.33 E-value=0.15 Score=31.91 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008246 404 NALILMGQTQLQKGLLEEAVEYLEC 428 (572)
Q Consensus 404 ~a~~~LG~l~~~~g~~~eA~~~~~r 428 (572)
.+++.+|.++...|++++|+..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 5678889999999999999888763
No 307
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.32 E-value=0.15 Score=52.35 Aligned_cols=73 Identities=19% Similarity=0.136 Sum_probs=68.6
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
.+|+..|..+..|...|..++..++...|++-|..|+++||+.+..+-..|.....+|++++|...++.|..+
T Consensus 139 ~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 139 SAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 4778888888889999999999999999999999999999999999999999999999999999999999974
No 308
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.01 E-value=0.49 Score=39.77 Aligned_cols=61 Identities=20% Similarity=0.153 Sum_probs=44.6
Q ss_pred hccHHHHHHHHHHHhcCCCCCCCch-hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008246 484 QEKWEEGIAHLERIGNLKEPEEPKS-KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 544 (572)
Q Consensus 484 ~g~~~eAi~~l~kal~l~~p~dp~~-~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P 544 (572)
.|+|.+|++.+.+..+.....+... ...+..+++++|.++...|++++|.+.+++++++.-
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4499999888888876322122111 113445788899999999999999999999998753
No 309
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.70 E-value=4.6 Score=42.80 Aligned_cols=131 Identities=16% Similarity=0.098 Sum_probs=77.1
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchh--h--H
Q 008246 393 QLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHN--F--F 468 (572)
Q Consensus 393 ~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~--~--~ 468 (572)
-..|+.+|-+.+++..++.++.++|+.+.|.+.++||+-.. +.... ..+..-......|... + .
T Consensus 30 ~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----------e~~~~--~~F~~~~~~~~~g~~rL~~~~~ 97 (360)
T PF04910_consen 30 INLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----------ERAFH--PSFSPFRSNLTSGNCRLDYRRP 97 (360)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------HHHHH--HHhhhhhcccccCccccCCccc
Confidence 34578999999999999999999999999999999998531 00000 0000000000111000 0 0
Q ss_pred HHHHhh---hhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 469 ELVQQG---QLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 469 ~a~~~~---~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~ 541 (572)
+.-+.. -.....+.++|-+..|.++.+-.+.|+...||-. +++.+-....+.++++-=++.++....
T Consensus 98 eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g------~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 98 ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG------VLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch------hHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 100000 0123345667799999999999999754337642 334444445566777766666665444
No 310
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=90.41 E-value=0.93 Score=49.72 Aligned_cols=90 Identities=13% Similarity=0.057 Sum_probs=66.2
Q ss_pred ccccCCCCHHHHHHHHHHHH-hcCCcccHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008246 361 KISVENLTPKELIALSVKFL-SKGDKERPIPLLQLALNKEPDNI--NALILMGQTQLQKGLLEEAVEYLECAISKLFLAG 437 (572)
Q Consensus 361 ai~~~~~~~~~~~~lA~~~~-~~g~~~~A~~~l~~AL~~dP~~~--~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~ 437 (572)
+++-.+-+. .+..+|..|. .+|+.-+|..++..|+-..|++. -++..+|.++.+.|...+|--.+..|+.-
T Consensus 205 glq~~~~sw-~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~d----- 278 (886)
T KOG4507|consen 205 GLQKNTSSW-VLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDD----- 278 (886)
T ss_pred hhhcCchhH-HHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccC-----
Confidence 344444333 4455555554 57999999999999999988875 57888999999999999999999777741
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHhh
Q 008246 438 HPTEPEAIDLLIVASQWSGVACIRQA 463 (572)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~~~~~~g 463 (572)
.|.- ..-++.+|.++..++
T Consensus 279 A~~~-------t~n~y~l~~i~aml~ 297 (886)
T KOG4507|consen 279 ADFF-------TSNYYTLGNIYAMLG 297 (886)
T ss_pred Cccc-------cccceeHHHHHHHHh
Confidence 2222 122567888998888
No 311
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.36 E-value=3.8 Score=41.63 Aligned_cols=138 Identities=14% Similarity=0.043 Sum_probs=80.9
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhhhhc
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMG--QTQLQKGLLEEAVEYLECAISKLFLA 436 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG--~l~~~~g~~~eA~~~~~rAl~~l~~~ 436 (572)
..+...++.+.+..+.+|.++...|+.++|...+...=..+.+. +++..-+ .++.+.....+..+.-++.-+
T Consensus 158 ~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa----- 231 (304)
T COG3118 158 KQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIELLEQAAATPEIQDLQRRLAA----- 231 (304)
T ss_pred HHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHh-----
Confidence 45667777778999999999999999999977766532222211 1111112 334444444444444433333
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHH
Q 008246 437 GHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL 516 (572)
Q Consensus 437 ~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al 516 (572)
+|++. .+.+.++..+...| ++++|.+++-..++ .|-+.. .-.+.
T Consensus 232 -dPdd~-------~aa~~lA~~~~~~g----------------------~~e~Ale~Ll~~l~----~d~~~~--d~~~R 275 (304)
T COG3118 232 -DPDDV-------EAALALADQLHLVG----------------------RNEAALEHLLALLR----RDRGFE--DGEAR 275 (304)
T ss_pred -CCCCH-------HHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHH----hccccc--CcHHH
Confidence 66653 34566788888888 99999999988887 222111 01223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 008246 517 VVLASALCNVGRNAEAEKYLRL 538 (572)
Q Consensus 517 ~~Lg~~l~~~g~~eeA~~~l~~ 538 (572)
-.+-.++...|.-|.+...|++
T Consensus 276 k~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 276 KTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred HHHHHHHHhcCCCCHHHHHHHH
Confidence 3344555555555444444444
No 312
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.28 E-value=6.4 Score=44.79 Aligned_cols=143 Identities=13% Similarity=0.101 Sum_probs=91.9
Q ss_pred CHHHHHHHHHHHH-hcCCcccHHHHHHHHHhhC--CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008246 368 TPKELIALSVKFL-SKGDKERPIPLLQLALNKE--PDNI----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (572)
Q Consensus 368 ~~~~~~~lA~~~~-~~g~~~~A~~~l~~AL~~d--P~~~----~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~ 440 (572)
.+..++.+|..++ +..++++|+.++++++.+. ++.. .+.+.++.++.+.+... |...++++++.. .+.+.
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~--~~~~~ 134 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS--ETYGH 134 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH--hccCc
Confidence 3567889999988 6689999999999998776 4433 34557788888888888 999999999741 11111
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHH
Q 008246 441 EPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA 520 (572)
Q Consensus 441 ~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg 520 (572)
. .|.+.-.. .+. ......+++..|++.+++...+. ....+...+.-+.+.-|
T Consensus 135 ~---------~w~~~frl-l~~----------------~l~~~~~d~~~Al~~L~~~~~~a--~~~~d~~~~v~~~l~~~ 186 (608)
T PF10345_consen 135 S---------AWYYAFRL-LKI----------------QLALQHKDYNAALENLQSIAQLA--NQRGDPAVFVLASLSEA 186 (608)
T ss_pred h---------hHHHHHHH-HHH----------------HHHHhcccHHHHHHHHHHHHHHh--hhcCCHHHHHHHHHHHH
Confidence 0 11111000 000 00111148999999999988743 22233333434445567
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 008246 521 SALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 521 ~~l~~~g~~eeA~~~l~~aL~ 541 (572)
.++...+..+++.+.++++..
T Consensus 187 ~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 187 LLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred HHHhcCCCchhHHHHHHHHHH
Confidence 778888888888888887744
No 313
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.09 E-value=5 Score=46.36 Aligned_cols=127 Identities=17% Similarity=0.121 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPD---------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~---------~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
+|+-.+..|..+..+.++++|..++.++-..-+. .++..-..|.+....|++++|+++.+.++..+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L----- 488 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQL----- 488 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----
Confidence 4566778888999999999999998887765544 24555667888999999999999999999863
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHH--
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL-- 516 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al-- 516 (572)
|.+. .-.-..+.-..|.+..-.| ++++|..+.+++.++. -.....++..+
T Consensus 489 ~~~~--~~~r~~~~sv~~~a~~~~G----------------------~~~~Al~~~~~a~~~a----~~~~~~~l~~~~~ 540 (894)
T COG2909 489 PEAA--YRSRIVALSVLGEAAHIRG----------------------ELTQALALMQQAEQMA----RQHDVYHLALWSL 540 (894)
T ss_pred cccc--chhhhhhhhhhhHHHHHhc----------------------hHHHHHHHHHHHHHHH----HHcccHHHHHHHH
Confidence 2221 1111123455566666667 8888888888877631 11111233333
Q ss_pred HHHHHHHHHcC
Q 008246 517 VVLASALCNVG 527 (572)
Q Consensus 517 ~~Lg~~l~~~g 527 (572)
..-+.++.++|
T Consensus 541 ~~~s~il~~qG 551 (894)
T COG2909 541 LQQSEILEAQG 551 (894)
T ss_pred HHHHHHHHHhh
Confidence 33477777888
No 314
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.54 E-value=9.8 Score=39.60 Aligned_cols=115 Identities=12% Similarity=0.062 Sum_probs=68.3
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHH
Q 008246 389 IPLLQLALNKEPDNINALILMGQTQLQKGL------------LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSG 456 (572)
Q Consensus 389 ~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~------------~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG 456 (572)
...|++.++.+|+|.++|..+.......-. .+.-+..|++|++. +|++. . +-
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-----np~~~---~--------L~ 68 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-----NPDSE---R--------LL 68 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-----CCCCH---H--------HH
Confidence 456899999999999999999887654433 46677889999974 66543 1 11
Q ss_pred HHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 008246 457 VACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYL 536 (572)
Q Consensus 457 ~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l 536 (572)
..|.+.+ .+..+.++..+.+++++. .+|++..-| ..++..-......-.+++..+.|
T Consensus 69 l~~l~~~------------------~~~~~~~~l~~~we~~l~----~~~~~~~LW-~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 69 LGYLEEG------------------EKVWDSEKLAKKWEELLF----KNPGSPELW-REYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHH------------------HHhCCHHHHHHHHHHHHH----HCCCChHHH-HHHHHHHHHHhccCcHHHHHHHH
Confidence 1222222 111155666777888887 455443322 12222211222233567777777
Q ss_pred HHHHHh
Q 008246 537 RLAAAH 542 (572)
Q Consensus 537 ~~aL~l 542 (572)
.++++.
T Consensus 126 ~~~l~~ 131 (321)
T PF08424_consen 126 EKCLRA 131 (321)
T ss_pred HHHHHH
Confidence 777664
No 315
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.20 E-value=1.6 Score=48.17 Aligned_cols=65 Identities=22% Similarity=0.250 Sum_probs=51.8
Q ss_pred hhhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 358 KQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 358 ~~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
|++|+++-+ |++..++++ ++.|+++.|.++.. +.++..-|-.||.+....|++..|.+||.+|..
T Consensus 630 ~e~AL~~s~-D~d~rFela---l~lgrl~iA~~la~-----e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 630 KEQALELST-DPDQRFELA---LKLGRLDIAFDLAV-----EANSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hHhhhhcCC-Chhhhhhhh---hhcCcHHHHHHHHH-----hhcchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 356776654 567778777 56688888876543 346788999999999999999999999999975
No 316
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.10 E-value=1.2 Score=45.11 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
..++..++..+...|+++.++..+++.+..||-+-.+|..+=..|.+.|+...|+..|++.-..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3467889999999999999999999999999999999999999999999999999999988763
No 317
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=88.97 E-value=1.2 Score=44.89 Aligned_cols=44 Identities=18% Similarity=0.088 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 388 PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 388 A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
|+.+|++|+.+.|++...|+.||.++...|+.=+|+-+|-|++.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~ 44 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLA 44 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHS
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999994
No 318
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=88.91 E-value=17 Score=38.68 Aligned_cols=142 Identities=13% Similarity=0.102 Sum_probs=86.1
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHhhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 374 ALSVKFLSKGDKERPIPLLQLALNKE---------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 374 ~lA~~~~~~g~~~~A~~~l~~AL~~d---------P~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
.....+..+.++.+|.++-+..+..- ==.+..|+.+..+|...|+...-...+..-+...++ ++-...
T Consensus 131 Lv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL-rhd~e~-- 207 (493)
T KOG2581|consen 131 LVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATL-RHDEEG-- 207 (493)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh-cCcchh--
Confidence 33444556788999887766655431 112455666677777777766555555444432100 110000
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHH
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 524 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~ 524 (572)
......+ ..+.|+.-+.|+.|.....+..- |+...+. .+..-++.+|.+-.
T Consensus 208 ---qavLiN~----------------------LLr~yL~n~lydqa~~lvsK~~~---pe~~snn-e~ARY~yY~GrIka 258 (493)
T KOG2581|consen 208 ---QAVLINL----------------------LLRNYLHNKLYDQADKLVSKSVY---PEAASNN-EWARYLYYLGRIKA 258 (493)
T ss_pred ---HHHHHHH----------------------HHHHHhhhHHHHHHHHHhhcccC---ccccccH-HHHHHHHHHhhHHH
Confidence 0001122 23334444589999888877764 3333332 34455678999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH
Q 008246 525 NVGRNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 525 ~~g~~eeA~~~l~~aL~l~P~~~ 547 (572)
-+++|.+|.+++-+|++..|++.
T Consensus 259 iqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 259 IQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred hhcchhHHHHHHHHHHHhCcchh
Confidence 99999999999999999999854
No 319
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=88.62 E-value=2.5 Score=47.61 Aligned_cols=138 Identities=20% Similarity=0.122 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~ 450 (572)
.|-..|..|...|+++.|+++|.++=..+ ++ -..|-+.|++++|-+.-++... |.+ ...
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~~~~----da----i~my~k~~kw~da~kla~e~~~-------~e~------t~~ 825 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEADLFK----DA----IDMYGKAGKWEDAFKLAEECHG-------PEA------TIS 825 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcchhH----HH----HHHHhccccHHHHHHHHHHhcC-------chh------HHH
Confidence 34455666677777777777766542211 11 2345566777766655544431 111 111
Q ss_pred HHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc------CCCCCCCchhhhhhHHHHHHHHHHH
Q 008246 451 ASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN------LKEPEEPKSKAHYYDGLVVLASALC 524 (572)
Q Consensus 451 a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~------l~~p~dp~~~~~~~~al~~Lg~~l~ 524 (572)
.|...+.-+-+.| +|.++.++ |.-.|..+.|+..|++.-. |-+... .++..+.+..+|.-|.
T Consensus 826 ~yiakaedldehg--kf~eaeql-------yiti~~p~~aiqmydk~~~~ddmirlv~k~h---~d~l~dt~~~f~~e~e 893 (1636)
T KOG3616|consen 826 LYIAKAEDLDEHG--KFAEAEQL-------YITIGEPDKAIQMYDKHGLDDDMIRLVEKHH---GDHLHDTHKHFAKELE 893 (1636)
T ss_pred HHHHhHHhHHhhc--chhhhhhe-------eEEccCchHHHHHHHhhCcchHHHHHHHHhC---hhhhhHHHHHHHHHHH
Confidence 1222233333444 34444333 3344556666666655422 100011 1234466778999999
Q ss_pred HcCCHHHHHHHHHHHHH
Q 008246 525 NVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 525 ~~g~~eeA~~~l~~aL~ 541 (572)
..|+..+|+.+|-++-+
T Consensus 894 ~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 894 AEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred hccChhHHHHHHHhhhh
Confidence 99999999999887643
No 320
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=88.45 E-value=8.7 Score=42.53 Aligned_cols=132 Identities=20% Similarity=0.037 Sum_probs=89.5
Q ss_pred hcCCccc-HHHHHHHHHhhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHH
Q 008246 381 SKGDKER-PIPLLQLALNKEPDNINALILM--GQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV 457 (572)
Q Consensus 381 ~~g~~~~-A~~~l~~AL~~dP~~~~a~~~L--G~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~ 457 (572)
..+.... |+..+...+..+|.+++.+... ...+...++...+...++.++.. +|++. .++.++|.
T Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~-----~~~~~-------~~~~~L~~ 109 (620)
T COG3914 42 NAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSV-----NPENC-------PAVQNLAA 109 (620)
T ss_pred cccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhc-----Ccccc-------hHHHHHHH
Confidence 3444444 6778888888999998886544 77778888998888888888874 55443 34667777
Q ss_pred HHHHhhchhhHHHHHhhhhhHhhhhhhccHH-HHHHHHHHHhcCCCCCCCchhhhhhH--HHHHHHHHHHHcCCHHHHHH
Q 008246 458 ACIRQAAHNFFELVQQGQLKLLSFVSQEKWE-EGIAHLERIGNLKEPEEPKSKAHYYD--GLVVLASALCNVGRNAEAEK 534 (572)
Q Consensus 458 ~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~-eAi~~l~kal~l~~p~dp~~~~~~~~--al~~Lg~~l~~~g~~eeA~~ 534 (572)
+....| ... -+....+.+.. ..|.+...... -++.+|..+..+|+.+++..
T Consensus 110 ale~~~----------------------~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 163 (620)
T COG3914 110 ALELDG----------------------LQFLALADISEIAEW----LSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAEL 163 (620)
T ss_pred HHHHhh----------------------hHHHHHHHHHHHHHh----cCcchHHHHhhHHHHHHHHHHHHHhccHHHHHH
Confidence 776666 333 33444444655 23333221111 12236888999999999999
Q ss_pred HHHHHHHhCCCCHHHH
Q 008246 535 YLRLAAAHNPQYNELL 550 (572)
Q Consensus 535 ~l~~aL~l~P~~~~~l 550 (572)
..+++.+..|.+.+.+
T Consensus 164 ~l~~~~d~~p~~~~~~ 179 (620)
T COG3914 164 ALERAVDLLPKYPRVL 179 (620)
T ss_pred HHHHHHHhhhhhhhhH
Confidence 9999999999986543
No 321
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.35 E-value=0.64 Score=29.04 Aligned_cols=24 Identities=42% Similarity=0.465 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 008246 515 GLVVLASALCNVGRNAEAEKYLRL 538 (572)
Q Consensus 515 al~~Lg~~l~~~g~~eeA~~~l~~ 538 (572)
++..+|.++...|+.++|+..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 456799999999999999998863
No 322
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.08 E-value=8.6 Score=45.15 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=29.4
Q ss_pred hhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008246 482 VSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAA 540 (572)
Q Consensus 482 ~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL 540 (572)
.+.|.|+.|.-+|...-. +..||..+..+|+|..|.+..++|-
T Consensus 1205 f~~~~y~aAkl~y~~vSN----------------~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSNVSN----------------FAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred hhhhhhHHHHHHHHHhhh----------------HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 445566666666554322 2348888999999999998888763
No 323
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=87.95 E-value=2.9 Score=49.54 Aligned_cols=107 Identities=17% Similarity=0.183 Sum_probs=71.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHH
Q 008246 409 MGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWE 488 (572)
Q Consensus 409 LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~ 488 (572)
...+.+..+.|++|+..|+|...- .|...+. .+|.+..|....++.... -....++
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~---------------~~~~~~~ 536 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRES-----FPGRKEG----YEAQFRLGITLLEKASEQ---------------GDPRDFT 536 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhc-----CCCcccc----hHHHHHhhHHHHHHHHhc---------------CChHHHH
Confidence 345566777788888888777642 4444322 235666777766554000 0112689
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 489 EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 489 eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
+|+..|++... .|..| --++..|.+|..+|+++|-+++|.-|++..|++.+
T Consensus 537 ~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 537 QALSEFSYLHG--GVGAP-------LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHHHHHHhcC--CCCCc-------hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 99999998876 23333 22345778899999999999999999999988754
No 324
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=87.72 E-value=0.86 Score=44.55 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=48.0
Q ss_pred hhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 482 VSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 482 ~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
.+.++.+.|.+.|.+++++ -|. |...|..+|....+.|+++.|.+.|++.+++||..
T Consensus 6 ~~~~D~~aaaely~qal~l----ap~----w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALEL----APE----WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhc----Cch----hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3455999999999999994 454 34566679999999999999999999999999974
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.50 E-value=9.7 Score=37.19 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=53.3
Q ss_pred HHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 375 lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
....+++.+..++|+...+.-++.+|.+......|=++|.-.|++++|...++-+.++
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 3456788899999999999999999999999999999999999999999999888875
No 326
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=87.36 E-value=5.7 Score=43.88 Aligned_cols=109 Identities=21% Similarity=0.181 Sum_probs=72.9
Q ss_pred ccCCCCHHHHHH--HHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhhhhcCCC
Q 008246 363 SVENLTPKELIA--LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLEC-AISKLFLAGHP 439 (572)
Q Consensus 363 ~~~~~~~~~~~~--lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~r-Al~~l~~~~~P 439 (572)
.+.+.+++.+.. +...+...++...+...++.++..||++..++.+||......|....+...+.. +... .|
T Consensus 59 ~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~-----~~ 133 (620)
T COG3914 59 AINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWL-----SP 133 (620)
T ss_pred ccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-----Cc
Confidence 344555555443 366677778888999999999999999999999999999888887777766655 5543 45
Q ss_pred CChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 440 TEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
++.+...+....+ .+|......| +.+++...++++.+
T Consensus 134 ~~~~~~~~~~~~~-~~~~~~~~l~----------------------~~~~~~~~l~~~~d 170 (620)
T COG3914 134 DNAEFLGHLIRFY-QLGRYLKLLG----------------------RTAEAELALERAVD 170 (620)
T ss_pred chHHHHhhHHHHH-HHHHHHHHhc----------------------cHHHHHHHHHHHHH
Confidence 5443222221122 2455555555 66666666666666
No 327
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.29 E-value=2.3 Score=46.28 Aligned_cols=63 Identities=24% Similarity=0.327 Sum_probs=47.0
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
.|+..- .|++..+++| ++.|+++.|.+.. ..-++..-|-.||...+.+|+++-|+++|+++-.
T Consensus 313 ~AL~~~-~D~~~rFeLA---l~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 313 LALQFV-TDPDHRFELA---LQLGNLDIALEIA-----KELDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHHHHS-S-HHHHHHHH---HHCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HHHhhc-CChHHHhHHH---HhcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 344442 2567788877 5678988887653 3445888999999999999999999999988764
No 328
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.18 E-value=2.5 Score=34.30 Aligned_cols=52 Identities=10% Similarity=0.046 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 486 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 486 ~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l 542 (572)
+.++|+..++++++ ..++... -+.++-.+..+|.+.|++++++++..+-+++
T Consensus 21 ~~~~Al~~W~~aL~----k~~~~~~-rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 21 ETQQALQKWRKALE----KITDRED-RFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred hHHHHHHHHHHHHh----hcCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999998 3443333 4578888999999999999999887665543
No 329
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.94 E-value=9.9 Score=42.76 Aligned_cols=130 Identities=21% Similarity=0.158 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhcC-----CcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhhcCCCC
Q 008246 369 PKELIALSVKFLSKG-----DKERPIPLLQLALNKEPDNINALILMGQTQLQKG---LLEEAVEYLECAISKLFLAGHPT 440 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g-----~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g---~~~eA~~~~~rAl~~l~~~~~P~ 440 (572)
+.+.+.+|..|.+.. +.+.|..+|.++-+.+ ++++.+.+|.++.... +...|.++|.+|... |+
T Consensus 288 ~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~----G~-- 359 (552)
T KOG1550|consen 288 PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA----GH-- 359 (552)
T ss_pred CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc----CC--
Confidence 346788899888754 5566999999998764 6788999999988765 678999999999962 11
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHH
Q 008246 441 EPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA 520 (572)
Q Consensus 441 ~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg 520 (572)
..+.++++.++..-. --..+.+.|..+++++.+.. .| .+...++
T Consensus 360 --------~~A~~~la~~y~~G~------------------gv~r~~~~A~~~~k~aA~~g---~~-------~A~~~~~ 403 (552)
T KOG1550|consen 360 --------ILAIYRLALCYELGL------------------GVERNLELAFAYYKKAAEKG---NP-------SAAYLLG 403 (552)
T ss_pred --------hHHHHHHHHHHHhCC------------------CcCCCHHHHHHHHHHHHHcc---Ch-------hhHHHHH
Confidence 245677777664332 11227799999999999831 12 1222344
Q ss_pred HHHHHc-CCHHHHHHHHHHHHHh
Q 008246 521 SALCNV-GRNAEAEKYLRLAAAH 542 (572)
Q Consensus 521 ~~l~~~-g~~eeA~~~l~~aL~l 542 (572)
..+... ++++.+...+...-+.
T Consensus 404 ~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 404 AFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred HHHHHccccccHHHHHHHHHHHh
Confidence 333332 6776666555544433
No 330
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.44 E-value=39 Score=36.56 Aligned_cols=136 Identities=18% Similarity=0.099 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCC-cccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008246 371 ELIALSVKFLSKGD-KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (572)
Q Consensus 371 ~~~~lA~~~~~~g~-~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~ 449 (572)
-++.-|..+.+.|. -++|+.+++.+++.-|.|.+.-...=. + -...|.+|++. + ..+
T Consensus 381 ~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~--f-------vKq~Y~qaLs~-----~-----~~~--- 438 (549)
T PF07079_consen 381 YLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFL--F-------VKQAYKQALSM-----H-----AIP--- 438 (549)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHH--H-------HHHHHHHHHhh-----h-----hHH---
Confidence 34566888888888 677999999999999998855443211 1 22345555542 0 111
Q ss_pred HHHHHHHHHHHHhhchhh--HH-HHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHc
Q 008246 450 VASQWSGVACIRQAAHNF--FE-LVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 526 (572)
Q Consensus 450 ~a~~~lG~~~~~~g~~~~--~~-a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~ 526 (572)
-...++......|.... .+ -++..-..+.-+..+|+|.++.-+-.=..+ .+| + ..++..+|.+++..
T Consensus 439 -rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~----iaP-S----~~~~RLlGl~l~e~ 508 (549)
T PF07079_consen 439 -RLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK----IAP-S----PQAYRLLGLCLMEN 508 (549)
T ss_pred -HHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH----hCC-c----HHHHHHHHHHHHHH
Confidence 12233333333332111 00 011111223346778999999887666666 455 2 25677899999999
Q ss_pred CCHHHHHHHHHH
Q 008246 527 GRNAEAEKYLRL 538 (572)
Q Consensus 527 g~~eeA~~~l~~ 538 (572)
.+|+||-.++..
T Consensus 509 k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 509 KRYQEAWEYLQK 520 (549)
T ss_pred hhHHHHHHHHHh
Confidence 999999999865
No 331
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.17 E-value=5.7 Score=40.36 Aligned_cols=109 Identities=21% Similarity=0.235 Sum_probs=66.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhc-cHHHHH
Q 008246 413 QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQE-KWEEGI 491 (572)
Q Consensus 413 ~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g-~~~eAi 491 (572)
..++||++.|..++.|+-... +..+++. ...++..++.-| ....+.+ ++++|.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~----~~~~~~~-------~~~La~~~yn~G---------------~~l~~~~~~~~~a~ 56 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLL----NSLDPDM-------AEELARVCYNIG---------------KSLLSKKDKYEEAV 56 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHH----hcCCcHH-------HHHHHHHHHHHH---------------HHHHHcCCChHHHH
Confidence 457899999999999998741 1111111 223444444444 2233344 889999
Q ss_pred HHHHHHhcCC------CCCCCchhhhhhHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhCCCCH
Q 008246 492 AHLERIGNLK------EPEEPKSKAHYYDGLVVLASALCNVGRNAE---AEKYLRLAAAHNPQYN 547 (572)
Q Consensus 492 ~~l~kal~l~------~p~dp~~~~~~~~al~~Lg~~l~~~g~~ee---A~~~l~~aL~l~P~~~ 547 (572)
.+++++.++- +...++...-....+..++.+|.+.+..+. |..+.+.+-...|+..
T Consensus 57 ~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~ 121 (278)
T PF08631_consen 57 KWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP 121 (278)
T ss_pred HHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc
Confidence 9999998751 122333333455678889999999887764 4445555544556643
No 332
>PRK10941 hypothetical protein; Provisional
Probab=85.81 E-value=5.5 Score=40.37 Aligned_cols=55 Identities=15% Similarity=0.107 Sum_probs=45.8
Q ss_pred cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 486 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 486 ~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
+++.|+.+.++++.+ .|++| ..+ .-.|.+|.++|.+..|..-++..++.-|+...
T Consensus 196 ~~~~AL~~~e~ll~l-~P~dp---~e~----RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 196 QMELALRASEALLQF-DPEDP---YEI----RDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred cHHHHHHHHHHHHHh-CCCCH---HHH----HHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 999999999999994 34444 333 34899999999999999999999999988754
No 333
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.59 E-value=12 Score=34.37 Aligned_cols=97 Identities=21% Similarity=0.237 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhh
Q 008246 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVS 483 (572)
Q Consensus 404 ~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~ 483 (572)
.++.....+....++.++++..+. |++.+ .|+.+ ..+. .-|..+...|
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLd-ALrvL----rP~~~-e~d~------~dg~l~i~rg-------------------- 58 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLD-ALRVL----RPNLK-ELDM------FDGWLLIARG-------------------- 58 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHH-HHHHh----CCCcc-ccch------hHHHHHHHcC--------------------
Confidence 445555666677999999999995 45444 77776 3332 3588888888
Q ss_pred hccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008246 484 QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 484 ~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~ 543 (572)
+++||+..++...+ ..+... + +..+++.|+..+|+.+= ..+-.++++.+
T Consensus 59 --~w~eA~rvlr~l~~----~~~~~p--~--~kAL~A~CL~al~Dp~W-r~~A~~~le~~ 107 (153)
T TIGR02561 59 --NYDEAARILRELLS----SAGAPP--Y--GKALLALCLNAKGDAEW-HVHADEVLARD 107 (153)
T ss_pred --CHHHHHHHHHhhhc----cCCCch--H--HHHHHHHHHHhcCChHH-HHHHHHHHHhC
Confidence 99999999999987 222211 2 23457778888877542 23333444443
No 334
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=85.58 E-value=22 Score=37.92 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHH--HHHHH--HHHHHHcCCHHHHHHHHHHHHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN--ALILM--GQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~--a~~~L--G~l~~~~g~~~eA~~~~~rAl~ 431 (572)
.+.....+..+++.++|..|.+.++...+.-|.+.. .+..+ |.-+-..-++++|.+++++...
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345577888999999999999999999986444443 44444 4445678999999999999885
No 335
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=85.37 E-value=5.9 Score=47.63 Aligned_cols=147 Identities=16% Similarity=0.067 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHH------HHH-HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008246 367 LTPKELIALSVKFLSKGDKERPIP------LLQ-LALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (572)
Q Consensus 367 ~~~~~~~~lA~~~~~~g~~~~A~~------~l~-~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P 439 (572)
.+.+...+.+.....+|.+.+|.+ .+. ....+.|+....+..|+.++.+.|+.++|+.+-++|.-+- ..
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~----eR 1005 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIIS----ER 1005 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeee----ch
Confidence 445667888888888999998877 555 4556789999999999999999999999999999987420 11
Q ss_pred CChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCC----CCCCCchhhhhhHH
Q 008246 440 TEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLK----EPEEPKSKAHYYDG 515 (572)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~----~p~dp~~~~~~~~a 515 (572)
....+.......+.+++......+ +...|+..+.++..+. .++.|.-. ..
T Consensus 1006 ~~g~ds~~t~~~y~nlal~~f~~~----------------------~~~~al~~~~ra~~l~~Ls~ge~hP~~a----~~ 1059 (1236)
T KOG1839|consen 1006 VLGKDSPNTKLAYGNLALYEFAVK----------------------NLSGALKSLNRALKLKLLSSGEDHPPTA----LS 1059 (1236)
T ss_pred hccCCCHHHHHHhhHHHHHHHhcc----------------------CccchhhhHHHHHHhhccccCCCCCchh----hh
Confidence 111111112234555555544444 5566666666665421 12233221 22
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008246 516 LVVLASALCNVGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 516 l~~Lg~~l~~~g~~eeA~~~l~~aL~l~ 543 (572)
..+++.++...++++-|.++++.|++.+
T Consensus 1060 ~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1060 FINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3568888888899999999999999865
No 336
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=85.26 E-value=2.5 Score=28.87 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 008246 515 GLVVLASALCNVGRNAEAEKY--LRLAAAHNPQY 546 (572)
Q Consensus 515 al~~Lg~~l~~~g~~eeA~~~--l~~aL~l~P~~ 546 (572)
.+..+|..+..+|++++|++. |+-+..+++.+
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 355689999999999999999 66888887753
No 337
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=84.73 E-value=1.6 Score=30.24 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 404 NALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 404 ~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
+++..||.+-...++|++|++-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57889999999999999999999999975
No 338
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=84.56 E-value=1.7 Score=29.66 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH
Q 008246 404 NALILMGQTQLQKGLLEEAVEY 425 (572)
Q Consensus 404 ~a~~~LG~l~~~~g~~~eA~~~ 425 (572)
+.++.+|-.+..+|++++|++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHH
Confidence 3455556666666666666666
No 339
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=84.51 E-value=53 Score=33.90 Aligned_cols=150 Identities=15% Similarity=0.205 Sum_probs=93.2
Q ss_pred hcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-----------hhcCCCCChhhhhHHH
Q 008246 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL-----------FLAGHPTEPEAIDLLI 449 (572)
Q Consensus 381 ~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l-----------~~~~~P~~~~~~~~~~ 449 (572)
.++++.+.++..++.+..+|---+.++..++++.+.| ++++.+..+..+..+ +-+|.|.-.+
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~------ 183 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKFSDGTPFADD------ 183 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCH------
Confidence 6677889999999999999999999999999999999 577777766665531 1123332210
Q ss_pred HHHHHHHHHHHHh-hch-----hhHHHHHhhh--hhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHH
Q 008246 450 VASQWSGVACIRQ-AAH-----NFFELVQQGQ--LKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAS 521 (572)
Q Consensus 450 ~a~~~lG~~~~~~-g~~-----~~~~a~~~~~--~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~ 521 (572)
....|+...-... |.. .........+ ..+......|..++|+..++..+.- -..|. ..+ ...+.++.
T Consensus 184 ~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~--~~s~R--~rf-~~rL~~A~ 258 (301)
T TIGR03362 184 ETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQ--AREPR--ERF-HWRLLLAR 258 (301)
T ss_pred HHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CCChH--HHH-HHHHHHHH
Confidence 1223332110000 000 0000000111 1234456677899999999976541 12332 223 35678899
Q ss_pred HHHHcCCHHHHHHHHHHHHHh
Q 008246 522 ALCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 522 ~l~~~g~~eeA~~~l~~aL~l 542 (572)
++.+.|+++-|...|++..+.
T Consensus 259 l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 259 LLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999987664
No 340
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.22 E-value=32 Score=34.62 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=88.2
Q ss_pred hcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHH
Q 008246 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQ-KGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC 459 (572)
Q Consensus 381 ~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~-~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~ 459 (572)
....-++|.++-+.+|.++|.+..+|...-.++.. ..+..+-++++.+.++- +|.+- ..|...-.+.
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~-----npKNY-------QvWHHRr~iv 122 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIED-----NPKNY-------QVWHHRRVIV 122 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-----Cccch-------hHHHHHHHHH
Confidence 44566789999999999999999999887777654 44577888888888763 55543 3455555555
Q ss_pred HHhhchhhHHH------HHhhhhhH-----h--hhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHH--
Q 008246 460 IRQAAHNFFEL------VQQGQLKL-----L--SFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC-- 524 (572)
Q Consensus 460 ~~~g~~~~~~a------~~~~~~~~-----~--~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~-- 524 (572)
...|...+.|. +..+...- + +...-+.+++-++...+.++ .|-.+..+|..-++.+-....
T Consensus 123 e~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle----~Di~NNSAWN~Ryfvi~~~~~~~ 198 (318)
T KOG0530|consen 123 ELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLE----EDIRNNSAWNQRYFVITNTKGVI 198 (318)
T ss_pred HHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHH----HhhhccchhheeeEEEEeccCCc
Confidence 55552111111 11111110 1 11223456666666666666 333333333221111111100
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHhccccc
Q 008246 525 NVGRNAEAEKYLRLAAAHNPQYNELLEQLENND 557 (572)
Q Consensus 525 ~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~~~ 557 (572)
..-..++-+.+..+.+...|++...+.-+....
T Consensus 199 ~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l 231 (318)
T KOG0530|consen 199 SKAELERELNYTKDKILLVPNNESAWNYLKGLL 231 (318)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 001123344566667777777777777776533
No 341
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=83.94 E-value=4.7 Score=48.39 Aligned_cols=147 Identities=12% Similarity=0.010 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhh-------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNK-------E-PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~-------d-P~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~ 440 (572)
+..+..++..+.+.|++++|+..-++|.-+ | |+....+.+++...+..++...|+..+.+|..+..+--.|.
T Consensus 973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~ 1052 (1236)
T KOG1839|consen 973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGED 1052 (1236)
T ss_pred HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCC
Confidence 455678899999999999999987777543 3 56688899999999999999999999999987532211222
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHH
Q 008246 441 EPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA 520 (572)
Q Consensus 441 ~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg 520 (572)
.| .......+++..+...+ +++.|+++++.|.+..+-.-..........+..++
T Consensus 1053 hP----~~a~~~~nle~l~~~v~----------------------e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a 1106 (1236)
T KOG1839|consen 1053 HP----PTALSFINLELLLLGVE----------------------EADTALRYLESALAKNKKVLGPKELETALSYHALA 1106 (1236)
T ss_pred CC----chhhhhhHHHHHHhhHH----------------------HHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHH
Confidence 22 11123355666666666 88999999888886321111000011112233455
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 008246 521 SALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 521 ~~l~~~g~~eeA~~~l~~aL~ 541 (572)
..+...|++..|..+.+....
T Consensus 1107 ~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1107 RLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred HHHhhhHHHHHHHHHHhhHHH
Confidence 555556666665555555443
No 342
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=83.85 E-value=17 Score=31.54 Aligned_cols=106 Identities=21% Similarity=0.165 Sum_probs=62.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHH
Q 008246 409 MGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWE 488 (572)
Q Consensus 409 LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~ 488 (572)
++.-++++|++-+|++..+..+.. ++++. .. ...+...|.++.+++.. . -+...+.--.-
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~-----h~~~~-~~---~~lh~~QG~if~~lA~~-------t----en~d~k~~yLl 61 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISR-----HGEDE-SS---WLLHRLQGTIFYKLAKK-------T----ENPDVKFRYLL 61 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHH-----ccCCC-ch---HHHHHHHhHHHHHHHHh-------c----cCchHHHHHHH
Confidence 467789999999999999999975 44332 11 12344557666666500 0 00011111235
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 489 EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 489 eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l 542 (572)
.|+++|.++..+ .|.. ...++.+|.-+.....|+++..-.+++|..
T Consensus 62 ~sve~~s~a~~L----sp~~----A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVEL----SPDS----AHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhcc----ChhH----HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 678888888884 4433 234455665555555566666666666654
No 343
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=83.52 E-value=2.4 Score=45.39 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLE 427 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~ 427 (572)
...+..|.-++.+|++.++.-+-.-..+.+| ++.++..+|.++....+|+||-+++.
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4467778888999999999999999999999 99999999999999999999999994
No 344
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.13 E-value=28 Score=39.69 Aligned_cols=136 Identities=15% Similarity=0.087 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH--------------------------HHHHHHHHHHHHcCCH
Q 008246 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI--------------------------NALILMGQTQLQKGLL 419 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~--------------------------~a~~~LG~l~~~~g~~ 419 (572)
....-.|+.-|......|..++|.++++++++.=-+.- ..++..+...+-.|++
T Consensus 298 ~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~ 377 (608)
T PF10345_consen 298 ELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDW 377 (608)
T ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence 33344566678888888988899999999887422111 2334567777899999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHH----
Q 008246 420 EEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLE---- 495 (572)
Q Consensus 420 ~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~---- 495 (572)
.+|....+.+... ....|... ........++..|..+...| +.+.|+..|.
T Consensus 378 ~~a~~~l~~~~~~--~~~~~~~~-~~~~~~~~~yL~gl~~q~~g----------------------~l~~A~~~y~~~~~ 432 (608)
T PF10345_consen 378 SKATQELEFMRQL--CQRSPSKL-YESLYPLLHYLLGLYYQSTG----------------------DLEAALYQYQKPRF 432 (608)
T ss_pred HHHHHHHHHHHHH--HhcCccch-hhhhhHHHHHHHHHHHHHcC----------------------CHHHHHHHHhhhHH
Confidence 9999999888763 11122211 12222345777788888888 9999999998
Q ss_pred ----HHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHH
Q 008246 496 ----RIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAE 531 (572)
Q Consensus 496 ----kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~ee 531 (572)
.+.+ ..+. .+.+.-+.+++..++...+...+
T Consensus 433 ~~~~~~~~----~~~~-~El~ila~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 433 LLCEAANR----KSKF-RELYILAALNLAIILQYESSRDD 467 (608)
T ss_pred hhhhhhcc----CCcc-hHHHHHHHHHHHHHhHhhcccch
Confidence 3333 3332 33444566778888887776555
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.65 E-value=3.4 Score=41.84 Aligned_cols=60 Identities=18% Similarity=0.078 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
...+..+...|.+.+|+++.++++..||-+...+..|-.++...||--.|..+|++-.+.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 445677889999999999999999999999999999999999999999999999887754
No 346
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=82.57 E-value=2.5 Score=38.45 Aligned_cols=52 Identities=23% Similarity=0.248 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLL 419 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~ 419 (572)
..+..+..|..++..|++.-|.++.+.++..||+|.++...++.++.+.|.-
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999999999987765543
No 347
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.43 E-value=5.5 Score=38.38 Aligned_cols=55 Identities=25% Similarity=0.205 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN----INALILMGQTQLQKGLLEEAV 423 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~----~~a~~~LG~l~~~~g~~~eA~ 423 (572)
+++..+.+|..|. +.|.++|+.+|.++|++...+ ++.+..|+.++..+|++++|-
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5788899998887 678899999999999986654 899999999999999999874
No 348
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=80.22 E-value=38 Score=37.40 Aligned_cols=73 Identities=12% Similarity=0.064 Sum_probs=67.6
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
...|+..|.|.+.++.+-..+..+ .+++....|++.+...|..+.+|.....-.+..++|+.-+..|.|.+..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 468888999999999999888777 9999999999999999999999999999999999999999999999863
No 349
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=80.05 E-value=5.2 Score=40.26 Aligned_cols=64 Identities=20% Similarity=0.246 Sum_probs=56.9
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 374 ~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
.+=..+.+.++++.|..+.++.+.++|+++.-+--.|.+|.+.|-+.-|++-++..++. .|+++
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~-----~P~~~ 249 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH-----CPDDP 249 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh-----CCCch
Confidence 34455678899999999999999999999999999999999999999999999998875 66664
No 350
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=79.98 E-value=8 Score=42.28 Aligned_cols=96 Identities=13% Similarity=0.018 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhhhhcCCCCChhhhh
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEE---AVEYLECAISKLFLAGHPTEPEAID 446 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~e---A~~~~~rAl~~l~~~~~P~~~~~~~ 446 (572)
+-....|...+..+....|+..|.++++..|+....+.+.+.++.+++.... |+.-...|+++ + +
T Consensus 375 e~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl-----n-------~ 442 (758)
T KOG1310|consen 375 EKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL-----N-------P 442 (758)
T ss_pred HHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC-----C-------h
Confidence 3334444444555567789999999999999999999999999988766554 44444455542 2 2
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 447 LLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 447 ~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
....+|++++.++.+++ ++.+|+++...+..
T Consensus 443 s~~kah~~la~aL~el~----------------------r~~eal~~~~alq~ 473 (758)
T KOG1310|consen 443 SIQKAHFRLARALNELT----------------------RYLEALSCHWALQM 473 (758)
T ss_pred HHHHHHHHHHHHHHHHh----------------------hHHHhhhhHHHHhh
Confidence 23358999999999999 88888887765554
No 351
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=79.76 E-value=6.4 Score=42.76 Aligned_cols=78 Identities=17% Similarity=0.137 Sum_probs=64.3
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhhcCC
Q 008246 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGL-LEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~-~~eA~~~~~rAl~~l~~~~~ 438 (572)
.+..--+.|...+.....-....+.+.+--..|.+++..+|++++.|...|.-.+..+. .+.|...|.++++. +
T Consensus 96 ~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~-----n 170 (568)
T KOG2396|consen 96 RATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF-----N 170 (568)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc-----C
Confidence 34444455677777777777777779999999999999999999999999988877777 99999999999986 7
Q ss_pred CCCh
Q 008246 439 PTEP 442 (572)
Q Consensus 439 P~~~ 442 (572)
|+.+
T Consensus 171 pdsp 174 (568)
T KOG2396|consen 171 PDSP 174 (568)
T ss_pred CCCh
Confidence 7775
No 352
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.64 E-value=30 Score=32.69 Aligned_cols=105 Identities=13% Similarity=0.196 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPD----NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~----~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
.-+.+..|....++|+-++|+..|.++-.-.|- -.-+...-|.++...|-|++-..-.+..-. +++|
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~----d~n~----- 164 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAG----DGNP----- 164 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccC----CCCh-----
Confidence 346688899999999999999999988765432 124556667778899999987776643321 2221
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCch
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKS 508 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~ 508 (572)
.-..+..-+|.+.++.| ++.+|..+|++... +...|.+
T Consensus 165 --mR~sArEALglAa~kag----------------------d~a~A~~~F~qia~--Da~aprn 202 (221)
T COG4649 165 --MRHSAREALGLAAYKAG----------------------DFAKAKSWFVQIAN--DAQAPRN 202 (221)
T ss_pred --hHHHHHHHHhHHHHhcc----------------------chHHHHHHHHHHHc--cccCcHH
Confidence 22236677899999999 99999999999987 3344543
No 353
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=79.47 E-value=84 Score=32.81 Aligned_cols=148 Identities=20% Similarity=0.153 Sum_probs=83.7
Q ss_pred ccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--------------------------HHHHHHHHHHHHHhhhhcCCC
Q 008246 386 ERPIPLLQLALNKEPDNINALILMGQTQLQKGL--------------------------LEEAVEYLECAISKLFLAGHP 439 (572)
Q Consensus 386 ~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~--------------------------~~eA~~~~~rAl~~l~~~~~P 439 (572)
+||+.+=+-.+.+-|+.++++..++.+.++.-+ .+++...+.+|+.. +.|
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~----~~p 288 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALAS----RRP 288 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHc----CCC
Confidence 467777777788889999999888888764332 57778888888762 122
Q ss_pred CChhhhhHHHHHHHHHHHHHHHhhc---hhhHHHHHhhhhhH----------h---hhhhhccHHHHHHHHHHHhcCCCC
Q 008246 440 TEPEAIDLLIVASQWSGVACIRQAA---HNFFELVQQGQLKL----------L---SFVSQEKWEEGIAHLERIGNLKEP 503 (572)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~~~~~~g~---~~~~~a~~~~~~~~----------~---~~~~~g~~~eAi~~l~kal~l~~p 503 (572)
.- ..+ ......++.+... -+..+...++..+. + ......-.+.++...+...+
T Consensus 289 GP----Yql---qAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~---- 357 (415)
T COG4941 289 GP----YQL---QAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLA---- 357 (415)
T ss_pred Ch----HHH---HHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhc----
Confidence 11 000 0111122221111 11111111111110 0 11112224555665555544
Q ss_pred CCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008246 504 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELL 550 (572)
Q Consensus 504 ~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l 550 (572)
+|.-. .|+..+...|..+.++|+.+||.+.|++++++.++-.+..
T Consensus 358 -~~~L~-gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 358 -RPRLD-GYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred -ccccc-cccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 33222 2334566789999999999999999999999998877643
No 354
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=79.14 E-value=10 Score=41.43 Aligned_cols=104 Identities=16% Similarity=0.104 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhh
Q 008246 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVS 483 (572)
Q Consensus 404 ~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~ 483 (572)
+-...-|.=-+..+....|+..|.++++. .|.. ...+.+.+.++.+.+ |
T Consensus 375 e~~~~egnd~ly~~~~~~~i~~~s~a~q~-----~~~~-------~~~l~nraa~lmkRk-----------------W-- 423 (758)
T KOG1310|consen 375 EKFKTEGNDGLYESIVSGAISHYSRAIQY-----VPDA-------IYLLENRAAALMKRK-----------------W-- 423 (758)
T ss_pred HHHHhhccchhhhHHHHHHHHHHHHHhhh-----ccch-------hHHHHhHHHHHHhhh-----------------c--
Confidence 33333344344555677888888888863 2221 123344455555544 1
Q ss_pred hccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 484 QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 484 ~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
.|+--.|+.-...+++ .||. +..++..|+.++.+++++.||+++...+....|.+
T Consensus 424 ~~d~~~AlrDch~Alr----ln~s----~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 424 RGDSYLALRDCHVALR----LNPS----IQKAHFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred cccHHHHHHhHHhhcc----CChH----HHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 1244556666667777 4553 55788889999999999999999998888888843
No 355
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.63 E-value=51 Score=33.53 Aligned_cols=131 Identities=11% Similarity=0.045 Sum_probs=76.1
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHhhCCCC----------HHHHHH---HH-HHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008246 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDN----------INALIL---MG-QTQLQKGLLEEAVEYLECAISKLFLAG 437 (572)
Q Consensus 372 ~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~----------~~a~~~---LG-~l~~~~g~~~eA~~~~~rAl~~l~~~~ 437 (572)
+-..|..+.-..||..|++.++++++.=-++ .+.... +| +++.+.|++.+.+.+.-+-.+
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq------ 111 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQ------ 111 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhc------
Confidence 3444566667789999999999998753221 122222 23 557889999999988876664
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHH
Q 008246 438 HPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLV 517 (572)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~ 517 (572)
.|.+ .++. ....=-..|.+.+ ++....+.-..=++ +|.|-...+.-.-+-+
T Consensus 112 ~pEk---lPpk--IleLCILLysKv~----------------------Ep~amlev~~~WL~--~p~Nq~lp~y~~vaEL 162 (309)
T PF07163_consen 112 VPEK---LPPK--ILELCILLYSKVQ----------------------EPAAMLEVASAWLQ--DPSNQSLPEYGTVAEL 162 (309)
T ss_pred Cccc---CCHH--HHHHHHHHHHHhc----------------------CHHHHHHHHHHHHh--CcccCCchhhHHHHHH
Confidence 4443 2221 1111123344555 66666665555554 2333322221112234
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 008246 518 VLASALCNVGRNAEAEKYLR 537 (572)
Q Consensus 518 ~Lg~~l~~~g~~eeA~~~l~ 537 (572)
.+-.++.=+|.++||++...
T Consensus 163 yLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 163 YLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHHHHhccccHHHHHHHHh
Confidence 56677778899999998773
No 356
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=78.14 E-value=3.3 Score=26.32 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=26.4
Q ss_pred CCcccHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008246 383 GDKERPIPLLQLALNKEPDNINALILMGQT 412 (572)
Q Consensus 383 g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l 412 (572)
|+.+.|...|++++...|.+...|......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999999999999987764
No 357
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=78.10 E-value=1e+02 Score=34.54 Aligned_cols=167 Identities=16% Similarity=-0.065 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~ 449 (572)
+.+..-...-...|+++...-.|++++---....+.|+..+......|+.+-|...+.++.++. .|+.+ ..
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~----~k~~~-~i---- 368 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH----VKKTP-II---- 368 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc----CCCCc-HH----
Confidence 3445555556778999999999999999888999999999999999999999999998888752 33322 11
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhh--------------hhhHhhhhhhccHHHHH---HHHHHHhcCCCCCCCchhhhh
Q 008246 450 VASQWSGVACIRQAAHNFFELVQQG--------------QLKLLSFVSQEKWEEGI---AHLERIGNLKEPEEPKSKAHY 512 (572)
Q Consensus 450 ~a~~~lG~~~~~~g~~~~~~a~~~~--------------~~~~~~~~~~g~~~eAi---~~l~kal~l~~p~dp~~~~~~ 512 (572)
+..-+......| ++..|.... --.+.....+|+.+.+. +.+.....- ..++. ..
T Consensus 369 --~L~~a~f~e~~~--n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~---i~ 439 (577)
T KOG1258|consen 369 --HLLEARFEESNG--NFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNG---IL 439 (577)
T ss_pred --HHHHHHHHHhhc--cHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcc---hh
Confidence 111122222222 222211111 01122234566777766 333333331 11111 11
Q ss_pred hHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhcc
Q 008246 513 YDGLVVLASA-LCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 554 (572)
Q Consensus 513 ~~al~~Lg~~-l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~ 554 (572)
..-....+.. +.-.++.++|...+.++++.+|++..+..++-
T Consensus 440 ~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~ 482 (577)
T KOG1258|consen 440 EKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELI 482 (577)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHH
Confidence 1112223333 34468889999999999999999987655443
No 358
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=77.27 E-value=2.3 Score=29.42 Aligned_cols=30 Identities=20% Similarity=0.066 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhC
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKE 399 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~d 399 (572)
+.+..+|...+..++|++|+.-|+++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999864
No 359
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=76.60 E-value=14 Score=39.51 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=38.4
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008246 480 SFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 539 (572)
Q Consensus 480 ~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~a 539 (572)
||+..++.+-|+.+-.+.+. .+|. |+.-++.-|.+...+.||.||...+--+
T Consensus 237 CYL~~rkpdlALnh~hrsI~----lnP~----~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 237 CYLRMRKPDLALNHSHRSIN----LNPS----YFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hhhhcCCCchHHHHHhhhhh----cCcc----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344499999999999998 4553 4455677899999999999988765443
No 360
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=76.19 E-value=15 Score=39.43 Aligned_cols=132 Identities=18% Similarity=0.102 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhch
Q 008246 388 PIPLLQLALNKEPDNINALILMGQTQ--LQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAH 465 (572)
Q Consensus 388 A~~~l~~AL~~dP~~~~a~~~LG~l~--~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~ 465 (572)
..+..+...+.+|+-...+..|..++ ..+.+..+-++..++.. +|... ..+. .--.++..+|
T Consensus 58 ~~~e~~~l~~~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~-------~~~~~-~~~~------g~~~l~~~LG-- 121 (404)
T PF10255_consen 58 TEEEIQLLKENNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGE-------DPDEV-AGEY------GSSPLYKMLG-- 121 (404)
T ss_pred CHHHHHHHHhhccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccC-------Cchhh-hccc------ccccHHHHhh--
Confidence 34555555666688888887777665 34555666666665432 22211 0000 0011122222
Q ss_pred hhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCC-CCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 466 NFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEP-EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 466 ~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p-~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~ 541 (572)
++ .-.-+.+.+...|+|..|++.++-. ++... ........+...++.+|-+|+.++||.+|++.|...|-
T Consensus 122 -YF----SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 122 -YF----SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred -HH----HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0001334555566999999987643 21100 00111234455678899999999999999999988764
No 361
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.33 E-value=5.5 Score=28.53 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 517 VVLASALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 517 ~~Lg~~l~~~g~~eeA~~~l~~aL~ 541 (572)
+.||.+|.+.|+++.|++.+++.++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4589999999999999999999995
No 362
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=74.50 E-value=55 Score=36.55 Aligned_cols=132 Identities=12% Similarity=-0.016 Sum_probs=85.4
Q ss_pred CCcccHH-HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH
Q 008246 383 GDKERPI-PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR 461 (572)
Q Consensus 383 g~~~~A~-~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~ 461 (572)
-.+++.+ ..|..+--+++.+-..|......-...|+++...-.|++++- .-......|.....-...
T Consensus 276 ~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli------------~cA~Y~efWiky~~~m~~ 343 (577)
T KOG1258|consen 276 WGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLI------------PCALYDEFWIKYARWMES 343 (577)
T ss_pred HhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHh------------HHhhhHHHHHHHHHHHHH
Confidence 3445543 456667677777888898888999999999999999999984 122222345555555555
Q ss_pred hhchhhHHHHHhhhhh------------Hhhh-hhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCC
Q 008246 462 QAAHNFFELVQQGQLK------------LLSF-VSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 528 (572)
Q Consensus 462 ~g~~~~~~a~~~~~~~------------~~~~-~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~ 528 (572)
.|...+...+...... -..+ ...|++++|..+|++..+ +-|+. .++-.........+|+
T Consensus 344 ~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~----e~pg~----v~~~l~~~~~e~r~~~ 415 (577)
T KOG1258|consen 344 SGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIES----EYPGL----VEVVLRKINWERRKGN 415 (577)
T ss_pred cCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHh----hCCch----hhhHHHHHhHHHHhcc
Confidence 5644433322111111 0112 347899999999999988 44543 2344456677888899
Q ss_pred HHHHHH
Q 008246 529 NAEAEK 534 (572)
Q Consensus 529 ~eeA~~ 534 (572)
.+.+..
T Consensus 416 ~~~~~~ 421 (577)
T KOG1258|consen 416 LEDANY 421 (577)
T ss_pred hhhhhH
Confidence 988884
No 363
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=74.47 E-value=43 Score=40.03 Aligned_cols=136 Identities=17% Similarity=0.154 Sum_probs=85.3
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 373 IALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKG-------LLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~---~~a~~~LG~l~~~~g-------~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
+..-..++..+.|++|+..|++.-..-|+- -+|.+..|.....+- .+++|+..|++.-. .|..|
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 552 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG------GVGAP 552 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC------CCCCc
Confidence 344556677788999999999999999876 577788888776432 35666666655432 33322
Q ss_pred hhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHH
Q 008246 443 EAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA 522 (572)
Q Consensus 443 ~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~ 522 (572)
.-|.+.+.+|.++| +|+|-+++|.-|++ .-|..|.-...--.....+=.+
T Consensus 553 -------~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 602 (932)
T PRK13184 553 -------LEYLGKALVYQRLG----------------------EYNEEIKSLLLALK-RYSQHPEISRLRDHLVYRLHES 602 (932)
T ss_pred -------hHHHhHHHHHHHhh----------------------hHHHHHHHHHHHHH-hcCCCCccHHHHHHHHHHHHHH
Confidence 12556677778888 99999999999998 3444443221110111112222
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 523 LCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 523 l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
++ .+..+|..+.--++..-|..
T Consensus 603 ~~--~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 603 LY--KHRREALVFMLLALWIAPEK 624 (932)
T ss_pred HH--HHHHHHHHHHHHHHHhCccc
Confidence 22 23445666777777777764
No 364
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=74.43 E-value=1.2e+02 Score=31.76 Aligned_cols=70 Identities=16% Similarity=0.126 Sum_probs=42.6
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCC-----------------------CCHHH--HHHHHHHHH
Q 008246 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEP-----------------------DNINA--LILMGQTQL 414 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP-----------------------~~~~a--~~~LG~l~~ 414 (572)
.++++.+.-+.+|+.+|..-. --..+|+.++++||+.-. .+... ...|+.+..
T Consensus 209 ~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCAR 286 (556)
T KOG3807|consen 209 QALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCAR 286 (556)
T ss_pred HHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHH
Confidence 355666655556666555432 235567777777776321 11222 235777888
Q ss_pred HcCCHHHHHHHHHHHHH
Q 008246 415 QKGLLEEAVEYLECAIS 431 (572)
Q Consensus 415 ~~g~~~eA~~~~~rAl~ 431 (572)
++|+..||.+.++...+
T Consensus 287 klGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMK 303 (556)
T ss_pred HhhhHHHHHHHHHHHhh
Confidence 88888888888876654
No 365
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=73.92 E-value=55 Score=33.45 Aligned_cols=30 Identities=10% Similarity=0.015 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 403 INALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 403 ~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
.+|+.++|..|.+.++.+.+.++..+.++.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~ 144 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRD 144 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 689999999999999999999999888863
No 366
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=73.75 E-value=35 Score=30.89 Aligned_cols=65 Identities=11% Similarity=0.195 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHh
Q 008246 403 INALILMGQTQLQKGL---LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLL 479 (572)
Q Consensus 403 ~~a~~~LG~l~~~~g~---~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~ 479 (572)
.+..+++++++....+ ..+.+.+++..+. ..+|.. ..+ -.|.++..+++.+
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~--rRe----~lyYLAvg~yRlk---------------- 85 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPER--RRE----CLYYLAVGHYRLK---------------- 85 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCccc--chh----hhhhhHHHHHHHh----------------
Confidence 4556666666654443 4455666655553 113332 111 2456677777777
Q ss_pred hhhhhccHHHHHHHHHHHhc
Q 008246 480 SFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 480 ~~~~~g~~~eAi~~l~kal~ 499 (572)
+|++++.+.+..++
T Consensus 86 ------eY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 86 ------EYSKSLRYVDALLE 99 (149)
T ss_pred ------hHHHHHHHHHHHHh
Confidence 77777777777777
No 367
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=72.81 E-value=38 Score=38.50 Aligned_cols=61 Identities=18% Similarity=0.010 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHH--H----------HHHHHHHHHcCCHHHHHHHHHHH
Q 008246 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINA--L----------ILMGQTQLQKGLLEEAVEYLECA 429 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a--~----------~~LG~l~~~~g~~~eA~~~~~rA 429 (572)
|+.+|+.+-.+|...+.+-+++-|+..|-+.- +.+.. - ...+.+-..-|+++||++.|-.|
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~----dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~ 760 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCG----DYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDA 760 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhc----cccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhcc
Confidence 44566777777777776666666665554432 11111 1 12233344457777777777544
No 368
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=72.26 E-value=32 Score=35.09 Aligned_cols=48 Identities=25% Similarity=0.294 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 486 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 486 ~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~ 541 (572)
+++.+++.+++.+. .||-+.. ++..+-.+|...|+..+|+..|++.-.
T Consensus 168 ~~~~~~~~l~~Li~----~dp~~E~----~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 168 RADAVIEHLERLIE----LDPYDEP----AYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred cHHHHHHHHHHHHh----cCccchH----HHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 99999999999999 5665443 445578889999999999999998755
No 369
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.20 E-value=42 Score=37.77 Aligned_cols=98 Identities=5% Similarity=0.071 Sum_probs=60.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccH
Q 008246 408 LMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKW 487 (572)
Q Consensus 408 ~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~ 487 (572)
+-|.-+++..+|..++++|+..+.- -|.|..+.+ .....-.+..||..+. +.
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~-----i~~D~~~~~-FaK~qR~l~~CYL~L~----------------------QL 410 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKD-----IISDNYSDR-FAKIQRALQVCYLKLE----------------------QL 410 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHh-----ccchhhhhH-HHHHHHHHHHHHhhHH----------------------HH
Confidence 3355567888888888888888763 344432222 2233444566666666 88
Q ss_pred HHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 488 EEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 488 ~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~ 541 (572)
|.|.++++.|.+ .||.+.- .....-.+....|+-++|..+......
T Consensus 411 D~A~E~~~EAE~----~d~~~~l----~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 411 DNAVEVYQEAEE----VDRQSPL----CQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHHh----hccccHH----HHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 888888888888 4554321 112234445566778888877665443
No 370
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=71.58 E-value=58 Score=33.79 Aligned_cols=45 Identities=24% Similarity=0.209 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 388 PIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 388 A~~~l~~AL~~dP~~------~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
-++.+++.++..-+| .+|+...|..|.+.||.+.|++.+++-.+.
T Consensus 83 ki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~k 133 (393)
T KOG0687|consen 83 KIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEK 133 (393)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344444444443333 789999999999999999999999887763
No 371
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=70.90 E-value=13 Score=44.30 Aligned_cols=28 Identities=18% Similarity=0.000 Sum_probs=17.7
Q ss_pred HhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 472 QQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 472 ~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
...+.+...+.+++++-||-+.++..+.
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 3334445556667777777777776665
No 372
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=70.80 E-value=67 Score=41.53 Aligned_cols=66 Identities=15% Similarity=0.007 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
+..-.+.+++.|......|+++.|..++-+|.+.. -++++...|..+-.+|+...|+..+++-+++
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44457889999999999999999999999998877 6789999999999999999999999999975
No 373
>PF11421 Synthase_beta: ATP synthase F1 beta subunit; InterPro: IPR020971 F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel. CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has three main subunits: a, b and c. This entry represents the beta subunit of the F1 component. The NMR solution structure of the protein in SDS micelles was found to contain two helices, an N-terminal amphipathic alpha-helix and a C-terminal alpha-helix separated by a large unstructured internal domain. The N-terminal alpha-helix is the Tom20 receptor binding site whereas the C-terminal alpha-helix is located upstream of the mitochondrial processing peptidase cleavage site [].; GO: 0005524 ATP binding, 0016887 ATPase activity, 0006200 ATP catabolic process, 0006754 ATP biosynthetic process, 0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); PDB: 1PYV_A.
Probab=70.79 E-value=4.5 Score=29.14 Aligned_cols=15 Identities=47% Similarity=0.518 Sum_probs=10.0
Q ss_pred ChhHHHHHHHHhhhh
Q 008246 1 MATAKLLLLQLRRCS 15 (572)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (572)
||++|+|-|.||-++
T Consensus 1 MASRR~lSSlLRSss 15 (49)
T PF11421_consen 1 MASRRLLSSLLRSSS 15 (49)
T ss_dssp ---SHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHh
Confidence 899999999888754
No 374
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.99 E-value=37 Score=37.43 Aligned_cols=75 Identities=19% Similarity=0.063 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCC-
Q 008246 450 VASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR- 528 (572)
Q Consensus 450 ~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~- 528 (572)
.-+..+|.++..+| +...|..+|..+++ ++-....+.-.+..+++.+|..+..+|.
T Consensus 450 lk~lL~g~~lR~Lg----------------------~~~~a~~~f~i~~~-~e~~~~~d~w~~PfA~YElA~l~~~~~g~ 506 (546)
T KOG3783|consen 450 LKYLLKGVILRNLG----------------------DSEVAPKCFKIQVE-KESKRTEDLWAVPFALYELALLYWDLGGG 506 (546)
T ss_pred HHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHH-HHHhhccccccccHHHHHHHHHHHhcccC
Confidence 34666799999999 88999999988874 1111111222344678889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCH
Q 008246 529 NAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 529 ~eeA~~~l~~aL~l~P~~~ 547 (572)
..+|.+++++|-+...+|.
T Consensus 507 ~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 507 LKEARALLLKAREYASDYE 525 (546)
T ss_pred hHHHHHHHHHHHhhccccc
Confidence 9999999999988876653
No 375
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=69.34 E-value=74 Score=34.91 Aligned_cols=86 Identities=20% Similarity=0.197 Sum_probs=64.0
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhH
Q 008246 389 IPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFF 468 (572)
Q Consensus 389 ~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~ 468 (572)
...|++|+...+.|...|........+.+.+.+-...|.+++.. +|+++ +. |...+.-.+.-+
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~-----Hp~~~---dL----WI~aA~wefe~n----- 153 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK-----HPNNP---DL----WIYAAKWEFEIN----- 153 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHh-----CCCCc---hh----HHhhhhhHHhhc-----
Confidence 56899999999999999999988888888899999999999986 88875 22 233333333333
Q ss_pred HHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCch
Q 008246 469 ELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKS 508 (572)
Q Consensus 469 ~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~ 508 (572)
.+.+.|.+.+.+++++ +|+.|.-
T Consensus 154 ----------------~ni~saRalflrgLR~-npdsp~L 176 (568)
T KOG2396|consen 154 ----------------LNIESARALFLRGLRF-NPDSPKL 176 (568)
T ss_pred ----------------cchHHHHHHHHHHhhc-CCCChHH
Confidence 1478889999999993 3444443
No 376
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=69.21 E-value=24 Score=39.98 Aligned_cols=28 Identities=25% Similarity=0.189 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008246 403 INALILMGQTQLQKGLLEEAVEYLECAI 430 (572)
Q Consensus 403 ~~a~~~LG~l~~~~g~~~eA~~~~~rAl 430 (572)
-+|+.+.|..+.....+++|.++|.+.-
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3566667777777777777777775543
No 377
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=68.80 E-value=76 Score=33.94 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHH--hhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 373 IALSVKFLSKGDKERPIPLLQLAL--NKEP--DNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL--~~dP--~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
.-+=..|+..+.+++|.....+.. +.+. +.++-.|.+|.+..-+++|..|.+++-+|+++
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 344556778889999988877765 1222 34666778999999999999999999999986
No 378
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.44 E-value=93 Score=33.16 Aligned_cols=153 Identities=16% Similarity=0.040 Sum_probs=75.3
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHhhhcCCCCCCccccccccccCCCCCCCchhHH-HHHHHHHHHHHHHHHhcccccCCcc
Q 008246 191 LWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSI-FPVLMAGLHYTNVQLSFGASSLGKE 269 (572)
Q Consensus 191 ~~~~lp~liQ~Pifi~~~~~lr~m~~~~~p~l~~~g~lW~~dLt~~Dp~~~~~i-LPil~~~~~~~~~~~~~~~~~~~~~ 269 (572)
.|+....=+|-+.|...=-+.|.+.....++++.++.-|+..++...-.. .-. -...+...+.++-.+........+.
T Consensus 6 ~~~~~~~~~~~~~l~l~~~~~r~~s~~~~~~~~~~~~t~~~~~~~~p~~~-~~~~s~~v~~~~~~~~~~~~~~~~~~~p~ 84 (372)
T KOG1239|consen 6 LWFFAISSLQEMRLFLLRPSCRSVSSPGFSGFSVFLRTILVKLTNSPLSQ-PEASSTSVVATVSPIIEGILLALSSWRPV 84 (372)
T ss_pred cCchhhhhhhhHHHhhhcccccccccCCcccccccceeeccccccCCCCc-CcccchHHHHhhchhHHHHHHHhcccCch
Confidence 34334444566666666667777766666666666666777665432100 000 0001111111111111111111011
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhh-hHHHHHHHHHHcCHHHHhhhCCCCCCCCCCCCCCc
Q 008246 270 NGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTN-SSFSIVQQLALKHPASRTMLGLPDKVVPAAARKPE 344 (572)
Q Consensus 270 ~~~~~~~~k~~k~~l~~~~l~~~~~~~~~Pagl~lYWi~s-~~~sl~Q~~~lr~~~~r~~lgip~~~~~~~~~~~~ 344 (572)
...+....+..+..-..-..+++..+..++..++.||+.+ -.-..++.....+|.++..++.-..+.......+.
T Consensus 85 ~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~ 160 (372)
T KOG1239|consen 85 ATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQE 160 (372)
T ss_pred hHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhccccchHHHHH
Confidence 1111111111111000011335555678899999999999 45555667778889999998887776655444433
No 379
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.56 E-value=38 Score=36.12 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhh
Q 008246 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVS 483 (572)
Q Consensus 404 ~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~ 483 (572)
.++..+|.-|...|+.+.|+++|-|+-.- |+ ........+.++-.+-...|
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdY--CT-------s~khvInm~ln~i~VSI~~~-------------------- 201 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDY--CT-------SAKHVINMCLNLILVSIYMG-------------------- 201 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhh--hc-------chHHHHHHHHHHHHHHHhhc--------------------
Confidence 67888999999999999999999996641 21 11112223444445555555
Q ss_pred hccHHHHHHHHHHHhcCCCCCCCc--hhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008246 484 QEKWEEGIAHLERIGNLKEPEEPK--SKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 539 (572)
Q Consensus 484 ~g~~~eAi~~l~kal~l~~p~dp~--~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~a 539 (572)
+|..-..+-.+|.+- |..-. ....-......-|.+...+++|+.|.+++-.+
T Consensus 202 --nw~hv~sy~~~A~st--~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 202 --NWGHVLSYISKAEST--PDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred --chhhhhhHHHHHHhC--chhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 554444444444431 10000 00011122334566777788999998887654
No 380
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.95 E-value=26 Score=40.47 Aligned_cols=52 Identities=19% Similarity=0.121 Sum_probs=34.0
Q ss_pred HhcCCcccHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 380 LSKGDKERPIPLLQLALNKEPDN-INALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 380 ~~~g~~~~A~~~l~~AL~~dP~~-~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
.++.-|+-|+.+.+. ...+++. .+.+...|.-++.+|++++|..+|-+.+..
T Consensus 345 ~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 345 FKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 344444445444322 2233333 466777899999999999999999998853
No 381
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=66.27 E-value=15 Score=41.18 Aligned_cols=51 Identities=25% Similarity=0.326 Sum_probs=36.7
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 480 SFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 480 ~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~ 541 (572)
.+++.++++||....++.-++ -| +.++-.|..+.+.++++||.+.|.+|=+
T Consensus 782 lHve~~~W~eAFalAe~hPe~----~~-------dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 782 LHVETQRWDEAFALAEKHPEF----KD-------DVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred heeecccchHhHhhhhhCccc----cc-------cccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 355667999998876655442 11 3445578899999999999999988744
No 382
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=64.71 E-value=9.9 Score=38.97 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALIL-MGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~-LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
-+.|+..+...+.-....|-+.+--..|.++++++|.|++.|.. .+.-+...++++.+...|.++++. +|..+
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~-----N~~~p 176 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM-----NSRSP 176 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhcc-----CCCCc
Confidence 34566677776666677788888999999999999999999987 666788999999999999999986 66665
No 383
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=64.50 E-value=1.1e+02 Score=34.00 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=54.9
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHH
Q 008246 393 QLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQ 472 (572)
Q Consensus 393 ~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~ 472 (572)
++-++.+|.|.++|+.|-+-+..+ .+++..+.|++-+.. .|..+ ++|.......++..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-----FP~s~-------r~W~~yi~~El~sk--------- 67 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-----FPSSP-------RAWKLYIERELASK--------- 67 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-----CCCCc-------HHHHHHHHHHHHhh---------
Confidence 788999999999999997766655 999999999999964 55554 33444444445555
Q ss_pred hhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 473 QGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 473 ~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
+|+.-+..|.+++.
T Consensus 68 -------------dfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 68 -------------DFESVEKLFSRCLV 81 (656)
T ss_pred -------------hHHHHHHHHHHHHH
Confidence 88888888888876
No 384
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.97 E-value=12 Score=26.77 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 406 LILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 406 ~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
.+.||.+|...|+.+.|.+.+++.+.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 46799999999999999999999985
No 385
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.64 E-value=27 Score=39.18 Aligned_cols=65 Identities=11% Similarity=-0.017 Sum_probs=50.4
Q ss_pred hhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008246 481 FVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 481 ~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~ 547 (572)
+++.++|..++++|+..++.. |.|-- ...+.....+++.||..+.+.|.|.+++++|=+.||...
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i-~~D~~-~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~ 428 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDI-ISDNY-SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP 428 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cchhh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH
Confidence 445569999999999999821 22221 223456677899999999999999999999999998753
No 386
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=63.36 E-value=17 Score=29.29 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHh-------hCCCCHHHHHHHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALN-------KEPDNINALILMG 410 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~-------~dP~~~~a~~~LG 410 (572)
+..+...|..+-..|++++|+.+|+++++ ..|++..-.....
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ 54 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQ 54 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 45667778888888888887777776655 4566665444333
No 387
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.03 E-value=2.4e+02 Score=31.67 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=51.5
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHh---------------------hCCCCHHHH---HHHHHHHHHcCC
Q 008246 363 SVENLTPKELIALSVKFLSKGDKERPIPLLQLALN---------------------KEPDNINAL---ILMGQTQLQKGL 418 (572)
Q Consensus 363 ~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~---------------------~dP~~~~a~---~~LG~l~~~~g~ 418 (572)
.-.|.+.+.+++.|.....+|+.+-|..+.+++|= .+|.|-..+ +..=+-+.++|=
T Consensus 278 ~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC 357 (665)
T KOG2422|consen 278 ISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGC 357 (665)
T ss_pred ccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 44578889999999999999999988888777764 234443333 333344578899
Q ss_pred HHHHHHHHHHHHHh
Q 008246 419 LEEAVEYLECAISK 432 (572)
Q Consensus 419 ~~eA~~~~~rAl~~ 432 (572)
+..|.++.+-.+++
T Consensus 358 ~rTA~E~cKlllsL 371 (665)
T KOG2422|consen 358 WRTALEWCKLLLSL 371 (665)
T ss_pred hHHHHHHHHHHhhc
Confidence 99999999766664
No 388
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=62.93 E-value=1.1e+02 Score=27.11 Aligned_cols=48 Identities=21% Similarity=0.183 Sum_probs=37.8
Q ss_pred HHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008246 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLE 427 (572)
Q Consensus 379 ~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~ 427 (572)
+.+.+.......+++..+..++.++..+..+..+|... +.++..++++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 34567889999999999999999999999999999765 3445555554
No 389
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=62.54 E-value=1.9e+02 Score=32.11 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
-.+++.++.+|.+. ..++=-..+++.++.|=++...--.|+..|.. ++-..+..+|.+|+..
T Consensus 99 kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 99 KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence 45789999999988 66788899999999999999998899888777 9999999999999963
No 390
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=62.54 E-value=35 Score=30.87 Aligned_cols=62 Identities=23% Similarity=0.244 Sum_probs=46.3
Q ss_pred HHHHHHHHHHH-hcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 370 KELIALSVKFL-SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 370 ~~~~~lA~~~~-~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
..|+.+|...+ .+|+-|+=.+.++...+-+-.+++.++.+|.+|.+.|+..+|.+.+++|-+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 36777777654 678888888888888877777899999999999999999999999999986
No 391
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=62.19 E-value=20 Score=33.45 Aligned_cols=95 Identities=13% Similarity=-0.003 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHhCCCCCCCCCCCC--Cch-hHHHHHHHHHHhhhhCCCCch
Q 008246 119 GFPWWTIIVSSTVALRIALLPLI-----VLQLKKIQRIAELLPRLPPPFPPPL--SGK-RFVDQISLFRREKRAAGCPSL 190 (572)
Q Consensus 119 glpW~~aIil~ti~vRl~llPl~-----i~~~~~~~k~~~l~P~l~~i~~~~~--~~~-~~~e~~~l~kk~~~~~g~~~~ 190 (572)
-+|..++|++++++.=++.-=+. .+..+...++++++-+.++++++.. +.+ -++++..+.++.... --..+
T Consensus 12 ~~P~~i~v~~~~~~~~~~s~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~m 90 (168)
T PF01956_consen 12 LLPITIVVFLIAILRGLISELLQKFLIDRKMDKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELMEKQQEM-MMMMM 90 (168)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 45776777776666555431111 1223344445555555555543211 111 122222222222100 00123
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHhh
Q 008246 191 LWFIASFAIQVPCFLVGVTSIRRM 214 (572)
Q Consensus 191 ~~~~lp~liQ~Pifi~~~~~lr~m 214 (572)
+.++.-+++++|+|..++..+...
T Consensus 91 K~~~~~~v~~i~i~~wi~~~f~g~ 114 (168)
T PF01956_consen 91 KPMFVTMVPQIPIFYWINYFFSGF 114 (168)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhhc
Confidence 333444566788777766666544
No 392
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=62.11 E-value=58 Score=37.32 Aligned_cols=66 Identities=20% Similarity=0.181 Sum_probs=45.6
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHH----HHHHHHcC-CHHHHHHHH
Q 008246 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILM----GQTQLQKG-LLEEAVEYL 426 (572)
Q Consensus 361 ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~L----G~l~~~~g-~~~eA~~~~ 426 (572)
.|..+...++.++.+|..+...|++++|-+.|-+|++++--|..-.... -.-..+.| +.++|.+.|
T Consensus 987 ri~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mf 1057 (1636)
T KOG3616|consen 987 RIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMF 1057 (1636)
T ss_pred HHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHh
Confidence 4555566678899999999999999999999999999986654322110 11123344 667777666
No 393
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=61.96 E-value=55 Score=32.56 Aligned_cols=52 Identities=10% Similarity=-0.040 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008246 486 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 539 (572)
Q Consensus 486 ~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~a 539 (572)
++++|++.|+.+... ....+......+.+..+..|+...|+.++.+.+.-+.
T Consensus 193 ~~~~A~~~l~~~~~~--yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 193 DYDKALKLLEPAASS--YRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred CHHHHHHHHHHHHHH--HHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 666666666666431 0111122222234455677777777777766654443
No 394
>PF12854 PPR_1: PPR repeat
Probab=61.67 E-value=15 Score=24.40 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 008246 515 GLVVLASALCNVGRNAEAEKYLRL 538 (572)
Q Consensus 515 al~~Lg~~l~~~g~~eeA~~~l~~ 538 (572)
.+..+-..|.+.|+.++|.+.+++
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh
Confidence 455688999999999999999986
No 395
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=61.53 E-value=23 Score=30.49 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGL 418 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~ 418 (572)
.......|...+..||+.+|++.+.++-+..++..-.+..-++....+||
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 34678889999999999999999999977766666666666777777775
No 396
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.52 E-value=74 Score=32.97 Aligned_cols=22 Identities=9% Similarity=0.070 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 008246 405 ALILMGQTQLQKGLLEEAVEYL 426 (572)
Q Consensus 405 a~~~LG~l~~~~g~~~eA~~~~ 426 (572)
....||.+|...+++..|...+
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L 126 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVL 126 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH
Confidence 3445666666666666666555
No 397
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=60.59 E-value=2e+02 Score=30.66 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHhhCCC-----CHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 008246 373 IALSVKFLSKGDKERPIPLLQLALNKEPD-----NINALILMGQT--QLQKGLLEEAVEYLEC 428 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL~~dP~-----~~~a~~~LG~l--~~~~g~~~eA~~~~~r 428 (572)
...+..+++.++|..|.+.|+++++..+. ....+..+... +-..-++++|.+++++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34566889999999999999999998653 23444445444 4578889999999985
No 398
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.57 E-value=81 Score=33.75 Aligned_cols=102 Identities=17% Similarity=0.136 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh--h
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKE---PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE--A 444 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~d---P~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~--~ 444 (572)
.++-.+|..|..-|+++.|+++|-++-.-- -.-...+.++=.+-...|+|..-..+-.+|.+ .|..-+ .
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s------t~~~~~~~~ 224 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES------TPDANENLA 224 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh------CchhhhhHH
Confidence 467889999999999999999999954432 22356777888888999999999999988886 331100 0
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
...........|.+...++ +|..|.+++-.+..
T Consensus 225 q~v~~kl~C~agLa~L~lk----------------------kyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 225 QEVPAKLKCAAGLANLLLK----------------------KYKSAAKYFLLAEF 257 (466)
T ss_pred HhcCcchHHHHHHHHHHHH----------------------HHHHHHHHHHhCCC
Confidence 0000112333466666666 88888888876653
No 399
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=59.91 E-value=24 Score=34.04 Aligned_cols=51 Identities=22% Similarity=0.169 Sum_probs=39.6
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHH
Q 008246 480 SFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEK 534 (572)
Q Consensus 480 ~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~ 534 (572)
+|....+.++|+..|-+++++.++.+.- ..+.+..|+.++.++|+++.|--
T Consensus 149 tyY~krD~~Kt~~ll~~~L~l~~~~~~~----n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 149 TYYTKRDPEKTIQLLLRALELSNPDDNF----NPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHccCHHHHHHHHHHHHHhcCCCCCC----CHHHHHHHHHHHHHhcchhhhhh
Confidence 4555558999999999999987665322 23567789999999999999853
No 400
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=59.82 E-value=36 Score=34.28 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008246 401 DNINALILMGQTQLQKGLLEEAVEYL 426 (572)
Q Consensus 401 ~~~~a~~~LG~l~~~~g~~~eA~~~~ 426 (572)
.|++.|..+|..+.+.|++.+|+.+|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 45667777777777777777777776
No 401
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.80 E-value=18 Score=38.76 Aligned_cols=65 Identities=18% Similarity=0.184 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC--hhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhh
Q 008246 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE--PEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVS 483 (572)
Q Consensus 406 ~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~--~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~ 483 (572)
...|.+++...|||..|++.++- +++ +... ..-+......++..|.+|..++
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~-idl-----~~~~l~~~V~~~~is~~YyvGFaylMlr-------------------- 178 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLEN-IDL-----NKKGLYTKVPACHISTYYYVGFAYLMLR-------------------- 178 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhc-cCc-----ccchhhccCcchheehHHHHHHHHHHHH--------------------
Confidence 34556667777777777766632 211 0000 0012223346889999999999
Q ss_pred hccHHHHHHHHHHHh
Q 008246 484 QEKWEEGIAHLERIG 498 (572)
Q Consensus 484 ~g~~~eAi~~l~kal 498 (572)
||.+|++.|...+
T Consensus 179 --RY~DAir~f~~iL 191 (404)
T PF10255_consen 179 --RYADAIRTFSQIL 191 (404)
T ss_pred --HHHHHHHHHHHHH
Confidence 7777777666665
No 402
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=59.73 E-value=11 Score=39.42 Aligned_cols=64 Identities=17% Similarity=0.077 Sum_probs=49.3
Q ss_pred hccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 484 QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 484 ~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
.+.+..|+..-..+++ .++... .+++-.+..+....++++|++.++.+...+|++.+..+.++.
T Consensus 288 ~~~~~~a~~~~~~~~~----~~~s~t----ka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~ 351 (372)
T KOG0546|consen 288 VKGRGGARFRTNEALR----DERSKT----KAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELEN 351 (372)
T ss_pred ccCCCcceeccccccc----cChhhC----cHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHH
Confidence 3467777766666665 344333 355568999999999999999999999999999988777776
No 403
>PRK11619 lytic murein transglycosylase; Provisional
Probab=59.19 E-value=1.9e+02 Score=33.26 Aligned_cols=144 Identities=13% Similarity=-0.037 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~ 447 (572)
+.+..--.....+..++++.+..++...-+..-+..+..|=+|..+...|+.++|..+|+++.. ..+.
T Consensus 311 ~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~------------~~~f 378 (644)
T PRK11619 311 STSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ------------QRGF 378 (644)
T ss_pred CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc------------CCCc
Confidence 3333333344556788888887777775554556789999999999999999999999999753 1111
Q ss_pred HHHHHHHHHHHHHHhhchh-h--------HHHHHh--hhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHH
Q 008246 448 LIVASQWSGVACIRQAAHN-F--------FELVQQ--GQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL 516 (572)
Q Consensus 448 ~~~a~~~lG~~~~~~g~~~-~--------~~a~~~--~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al 516 (572)
|+ -.+..++|... + ...+.. ...++..+.+.|+..+|...+..+++- .++ ...
T Consensus 379 -----YG-~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~-------~~~ 442 (644)
T PRK11619 379 -----YP-MVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS---RSK-------TEQ 442 (644)
T ss_pred -----HH-HHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCH-------HHH
Confidence 11 11222333221 0 001111 112345577888999999999888772 222 233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 008246 517 VVLASALCNVGRNAEAEKYLRLA 539 (572)
Q Consensus 517 ~~Lg~~l~~~g~~eeA~~~l~~a 539 (572)
..++....+.|.++-|+....++
T Consensus 443 ~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 443 AQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHhhc
Confidence 45777778889988888766554
No 404
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=58.20 E-value=66 Score=31.98 Aligned_cols=45 Identities=24% Similarity=0.191 Sum_probs=33.5
Q ss_pred cHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 387 RPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 387 ~A~~~l~~AL~~dP~~------~~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
..++++++|.+.-.+. ...-..+|..|+..|++++|+++|+++..
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~ 206 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAAS 206 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4466666666654322 34455889999999999999999999974
No 405
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=58.05 E-value=15 Score=22.84 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 517 VVLASALCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 517 ~~Lg~~l~~~g~~eeA~~~l~~aL~l 542 (572)
..+-..|.+.|+.++|.+.|++..+.
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhHC
Confidence 45778899999999999999987654
No 406
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=58.05 E-value=2.3e+02 Score=29.14 Aligned_cols=162 Identities=12% Similarity=0.136 Sum_probs=87.8
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHhh----CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HHhh--------
Q 008246 373 IALSVKFLSKGDKERPIPLLQLALNK----EP----DNINALILMGQTQLQKGLLEEAVEYLECA---ISKL-------- 433 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL~~----dP----~~~~a~~~LG~l~~~~g~~~eA~~~~~rA---l~~l-------- 433 (572)
+++|......+++++|+..|.+.|.. |. +.-.+...++.+|...|++..--+..... ....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 77888899999999999999999987 21 23456778999999999976544433222 2100
Q ss_pred --h-hcCCCCChhhhhHHHHHHHHHHHHHHHhh-c-hhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc-CCCCCCCc
Q 008246 434 --F-LAGHPTEPEAIDLLIVASQWSGVACIRQA-A-HNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN-LKEPEEPK 507 (572)
Q Consensus 434 --~-~~~~P~~~~~~~~~~~a~~~lG~~~~~~g-~-~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~-l~~p~dp~ 507 (572)
+ .+..|..+...+.. ........+-. + .+.+-...+.-.++..+.+.|+|.+|+....-.+. +...+|
T Consensus 87 irtLiekf~~~~dsl~dq----i~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DD-- 160 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQ----IKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDD-- 160 (421)
T ss_pred HHHHHHhcCCCCccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcC--
Confidence 0 00011111000000 00000010000 0 00000011111133457789999999997766553 111111
Q ss_pred hhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 508 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 508 ~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~ 541 (572)
.....+.++.-..+|.+..+..++.+.+..|-.
T Consensus 161 -K~~Li~vhllESKvyh~irnv~KskaSLTaArt 193 (421)
T COG5159 161 -KINLITVHLLESKVYHEIRNVSKSKASLTAART 193 (421)
T ss_pred -ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHH
Confidence 112335566678888888888888877766543
No 407
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.04 E-value=86 Score=37.41 Aligned_cols=131 Identities=16% Similarity=0.123 Sum_probs=76.4
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHH
Q 008246 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (572)
Q Consensus 374 ~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~ 453 (572)
..|..+++.|.|+.|.-+|. +..-|..|+..+...|+|..|.+.-++|-.. ..|-
T Consensus 1199 ~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~-----------------ktWK 1253 (1666)
T KOG0985|consen 1199 QVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKANST-----------------KTWK 1253 (1666)
T ss_pred HHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhccch-----------------hHHH
Confidence 33555555666665555543 3445666777777777777777777766531 2344
Q ss_pred HHHHHHHHhhchhhHHHH------Hhh--hhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHH
Q 008246 454 WSGVACIRQAAHNFFELV------QQG--QLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN 525 (572)
Q Consensus 454 ~lG~~~~~~g~~~~~~a~------~~~--~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~ 525 (572)
..+.++...++.++++.+ ..+ +...+-|...|-++|-+..++.++-|. -. +......||..|.+
T Consensus 1254 ~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE----RA----HMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE----RA----HMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh----HH----HHHHHHHHHHHHHh
Confidence 455566655544444432 122 234556788999999999999998742 11 11223346655543
Q ss_pred cCCHHHHHHHHHH
Q 008246 526 VGRNAEAEKYLRL 538 (572)
Q Consensus 526 ~g~~eeA~~~l~~ 538 (572)
=++++-.++++-
T Consensus 1326 -ykp~km~EHl~L 1337 (1666)
T KOG0985|consen 1326 -YKPEKMMEHLKL 1337 (1666)
T ss_pred -cCHHHHHHHHHH
Confidence 356666666554
No 408
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.34 E-value=21 Score=33.98 Aligned_cols=46 Identities=24% Similarity=0.148 Sum_probs=40.0
Q ss_pred ccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 386 ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 386 ~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
+..++..++.++..| ++..+..++.++...|+.++|.+..+++...
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677788888888 7899999999999999999999999999975
No 409
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=57.18 E-value=1.2e+02 Score=29.96 Aligned_cols=39 Identities=21% Similarity=0.091 Sum_probs=28.6
Q ss_pred HHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCH--HHHHhccc
Q 008246 517 VVLASALC---------NVGRNAEAEKYLRLAAAHNPQYN--ELLEQLEN 555 (572)
Q Consensus 517 ~~Lg~~l~---------~~g~~eeA~~~l~~aL~l~P~~~--~~l~~l~~ 555 (572)
-..|..+. ..++...|..++++|+++||+.. ..++.+++
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~ 222 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLER 222 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence 34677663 45688899999999999999853 34555554
No 410
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.06 E-value=26 Score=31.52 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=44.6
Q ss_pred CCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhcccc
Q 008246 502 EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 556 (572)
Q Consensus 502 ~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~~ 556 (572)
+|.|+...+.++-.-..+|..|...|+.+++..++-.|+..-|+-.+++.-++..
T Consensus 70 d~~d~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL~vlq~t 124 (143)
T KOG4056|consen 70 DPSDAEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQPAQLLQVLQQT 124 (143)
T ss_pred CCCCHHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHHHHHHhh
Confidence 3445554555666667899999999999999999999999999988888877664
No 411
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=57.05 E-value=30 Score=30.66 Aligned_cols=62 Identities=19% Similarity=0.151 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN---------------INALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~---------------~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
.+..+|....+.+++-.++-.|++|+.+.-+- .-.-.+||..+..+|+.+-.++|++-|-++
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~ 79 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEK 79 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHH
Confidence 46778999999999999999999998753221 233468999999999999999999887653
No 412
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=56.54 E-value=18 Score=29.11 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 486 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 486 ~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l 542 (572)
+.++|+...++|+. .| ..|++++|..+|..+++.
T Consensus 2 ~l~kai~Lv~~A~~----eD-------------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 2 DLERAHFLVTQAFD----ED-------------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred CHHHHHHHHHHHHH----hh-------------------HhhhHHHHHHHHHHHHHH
Confidence 45678888888877 22 357899999999888774
No 413
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.13 E-value=36 Score=32.32 Aligned_cols=51 Identities=27% Similarity=0.247 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008246 486 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 486 ~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~ 545 (572)
..++.++..++.++ ..|+ .+.+..++.++...|+.+||....+++..+.|.
T Consensus 126 ~l~~~~~~a~~~l~----~~P~-----~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 126 MLEAYIEWAERLLR----RRPD-----PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHH----hCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34556667777777 3442 245667899999999999999999999999994
No 414
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=56.02 E-value=1.6e+02 Score=32.24 Aligned_cols=13 Identities=23% Similarity=0.204 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhh
Q 008246 451 ASQWSGVACIRQA 463 (572)
Q Consensus 451 a~~~lG~~~~~~g 463 (572)
-|-.+|.....+|
T Consensus 349 ~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 349 KWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 3556666666666
No 415
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=55.62 E-value=1.3e+02 Score=39.21 Aligned_cols=126 Identities=15% Similarity=0.094 Sum_probs=79.9
Q ss_pred cccHHHHHHHHHh---hC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHH
Q 008246 385 KERPIPLLQLALN---KE----PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV 457 (572)
Q Consensus 385 ~~~A~~~l~~AL~---~d----P~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~ 457 (572)
..+-+-.+++++- ++ .+-.+.|...|++....|+++.|-.++-+|.+. .. ..++...+.
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~-----------r~---~~i~~E~AK 1710 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES-----------RL---PEIVLERAK 1710 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc-----------cc---chHHHHHHH
Confidence 4444555555432 23 334788999999999999999998888777752 10 112233333
Q ss_pred HHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCC-------Cchh--hhhhHHHHHHHHHHHHcCC
Q 008246 458 ACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEE-------PKSK--AHYYDGLVVLASALCNVGR 528 (572)
Q Consensus 458 ~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~d-------p~~~--~~~~~al~~Lg~~l~~~g~ 528 (572)
. ++++|+-..|+..+++.+++.-|+. |.+. ..+..+.+..+....+.|+
T Consensus 1711 ~----------------------lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n 1768 (2382)
T KOG0890|consen 1711 L----------------------LWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGN 1768 (2382)
T ss_pred H----------------------HHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcc
Confidence 3 4445599999999999997544431 1111 1122355666777777777
Q ss_pred HH--HHHHHHHHHHHhCCCC
Q 008246 529 NA--EAEKYLRLAAAHNPQY 546 (572)
Q Consensus 529 ~e--eA~~~l~~aL~l~P~~ 546 (572)
++ +-+++|..+.+.+|..
T Consensus 1769 ~~s~~ilk~Y~~~~ail~ew 1788 (2382)
T KOG0890|consen 1769 FESKDILKYYHDAKAILPEW 1788 (2382)
T ss_pred hhHHHHHHHHHHHHHHcccc
Confidence 54 3578999999999953
No 416
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=55.46 E-value=46 Score=33.53 Aligned_cols=153 Identities=12% Similarity=0.039 Sum_probs=87.8
Q ss_pred CCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH
Q 008246 383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLE-EAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR 461 (572)
Q Consensus 383 g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~-eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~ 461 (572)
.+..+-.+++.+.++-+|+|.++|...-.+....|+.. .-++..++++.. +.. +. .+|...--+...
T Consensus 92 ~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~-----DaK-----NY--HaWshRqW~~r~ 159 (318)
T KOG0530|consen 92 SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDD-----DAK-----NY--HAWSHRQWVLRF 159 (318)
T ss_pred HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhc-----ccc-----ch--hhhHHHHHHHHH
Confidence 45777789999999999999999999999999999888 778888888852 111 11 244444334333
Q ss_pred hhchhh-----HHHHHhhhhhHhh-------------hhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHH
Q 008246 462 QAAHNF-----FELVQQGQLKLLS-------------FVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL 523 (572)
Q Consensus 462 ~g~~~~-----~~a~~~~~~~~~~-------------~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l 523 (572)
-+..+- .+.++.+...-.+ .......+.-+.+..+.+. ..|.+.. +|..|..++
T Consensus 160 F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~----~vP~NeS----aWnYL~G~l 231 (318)
T KOG0530|consen 160 FKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKIL----LVPNNES----AWNYLKGLL 231 (318)
T ss_pred HhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHH----hCCCCcc----HHHHHHHHH
Confidence 331110 1111111111111 1223345666667777777 7887653 556677676
Q ss_pred HH-cC--CHHHHHHHHHHHH-HhCCCCHHHHHhccc
Q 008246 524 CN-VG--RNAEAEKYLRLAA-AHNPQYNELLEQLEN 555 (572)
Q Consensus 524 ~~-~g--~~eeA~~~l~~aL-~l~P~~~~~l~~l~~ 555 (572)
.. .| ...+-..+..... ...-....++.-+..
T Consensus 232 ~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d 267 (318)
T KOG0530|consen 232 ELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLD 267 (318)
T ss_pred HhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHH
Confidence 65 33 1334444444444 222233445555544
No 417
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.57 E-value=1.1e+02 Score=31.14 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=43.1
Q ss_pred hcCCcccHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 381 SKGDKERPIPLLQLALNKEPDNI----NALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 381 ~~g~~~~A~~~l~~AL~~dP~~~----~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
...+.++|+..|++.+++.++-. .|+-.+-.++++.|++++-.+.|.+.+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34588899999999999998864 4556677889999999999999988875
No 418
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.83 E-value=60 Score=33.87 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHH
Q 008246 388 PIPLLQLALNKEPDNINALI---LMGQTQLQKGLLEEAVEYLECAI 430 (572)
Q Consensus 388 A~~~l~~AL~~dP~~~~a~~---~LG~l~~~~g~~~eA~~~~~rAl 430 (572)
+...|+++.++-|++..+.+ .-|.+++..|+|.+....+..|-
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae 85 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAE 85 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHH
Confidence 44567777777777665443 56899999999988888775443
No 419
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=53.65 E-value=26 Score=24.80 Aligned_cols=34 Identities=18% Similarity=0.102 Sum_probs=30.2
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008246 390 PLLQLALNKEPDNINALILMGQTQLQKGLLEEAV 423 (572)
Q Consensus 390 ~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~ 423 (572)
..|.+|+..+|++...+..+|..+...|+.+.|+
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e~gdp~rae 36 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDEHGDPARAE 36 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCHHHHh
Confidence 4578899999999999999999999999997653
No 420
>PF12854 PPR_1: PPR repeat
Probab=53.51 E-value=28 Score=23.05 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008246 402 NINALILMGQTQLQKGLLEEAVEYLEC 428 (572)
Q Consensus 402 ~~~a~~~LG~l~~~~g~~~eA~~~~~r 428 (572)
|...|..+=..|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 345566666667777777777776654
No 421
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=52.76 E-value=1.2e+02 Score=27.97 Aligned_cols=131 Identities=20% Similarity=0.047 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--hcCCCCChhhh-hHHHHHHHHHHHHHHHhhchhh---HHHHHhhhhhH
Q 008246 405 ALILMGQTQLQKGLLEEAVEYLECAISKLF--LAGHPTEPEAI-DLLIVASQWSGVACIRQAAHNF---FELVQQGQLKL 478 (572)
Q Consensus 405 a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~--~~~~P~~~~~~-~~~~~a~~~lG~~~~~~g~~~~---~~a~~~~~~~~ 478 (572)
.....++..+..|+.++|...+++|...+. ...+|...... ........++ -+.......+. ....+.....+
T Consensus 4 ~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~i-PI~~~~~v~d~~~~~~~~~~ai~~a 82 (155)
T PF10938_consen 4 RDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLI-PIDAEVIVIDDYVPTPEKKAAIKTA 82 (155)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EE-EEEEEEEEE------HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceE-EEeeEEEEeeccCChHHHHHHHHHH
Confidence 345678888999999999999999987530 00000000000 0000000000 00000000000 01112222334
Q ss_pred hhhhhhccHHHHHHHHHHHhcCCCCCCCch-----hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 479 LSFVSQEKWEEGIAHLERIGNLKEPEEPKS-----KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 479 ~~~~~~g~~~eAi~~l~kal~l~~p~dp~~-----~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~ 541 (572)
+..++.|+..+|.+.++-+-. +-.. +-..+...+..+..+...|+++||...+..++.
T Consensus 83 ~~~l~~g~~~~A~~~L~~~~~-----ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 83 NELLKKGDKQAAREILKLAGS-----EIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHTT-HHHHHHHHHHTT------EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHhcc-----cceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 557778899999998876643 1000 011234556789999999999999999998864
No 422
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=52.70 E-value=1.6e+02 Score=29.83 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008246 486 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 486 ~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~ 547 (572)
+++.|..+.++.+.+ +|+|| ... .-.|.+|.++|.+.-|++-+...++.-|+..
T Consensus 196 ~~~~al~~~~r~l~l-~P~dp---~ei----rDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 196 QWELALRVAERLLDL-NPEDP---YEI----RDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred chHHHHHHHHHHHhh-CCCCh---hhc----cCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 566666666666652 23333 111 1246666666666666666666666655543
No 423
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=52.50 E-value=25 Score=21.93 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 527 GRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 527 g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
|+.++|.+.|+++++..|....++...-+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 57889999999999999988887765544
No 424
>PRK11619 lytic murein transglycosylase; Provisional
Probab=52.16 E-value=2.5e+02 Score=32.34 Aligned_cols=32 Identities=31% Similarity=0.290 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 516 LVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 516 l~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
.+.+|.++...|+.++|..+|+++.. ..++-.
T Consensus 349 ~YW~aRa~~~~g~~~~A~~~~~~~a~-~~~fYG 380 (644)
T PRK11619 349 RYWQADLLLEQGRKAEAEEILRQLMQ-QRGFYP 380 (644)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc-CCCcHH
Confidence 44577777777777777777777643 344433
No 425
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.79 E-value=2.2e+02 Score=31.70 Aligned_cols=82 Identities=12% Similarity=0.077 Sum_probs=58.9
Q ss_pred ccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhch
Q 008246 386 ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAH 465 (572)
Q Consensus 386 ~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~ 465 (572)
+...+.+.......|+++--.+..|..+...|+.+.|+..++..+.. ........-++.+|.++.-+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~----------~~kQ~~~l~~fE~aw~~v~~~-- 317 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPI----------RMKQVKSLMVFERAWLSVGQH-- 317 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccH----------HHHHHHHHHHHHHHHHHHHHH--
Confidence 45667777788889999999999999999999988888888877731 122222223444555555555
Q ss_pred hhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 466 NFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 466 ~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
+|.+|-..++...+
T Consensus 318 --------------------~~~~aad~~~~L~d 331 (546)
T KOG3783|consen 318 --------------------QYSRAADSFDLLRD 331 (546)
T ss_pred --------------------HHHHHhhHHHHHHh
Confidence 88888888887776
No 426
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=50.06 E-value=62 Score=31.83 Aligned_cols=61 Identities=23% Similarity=0.269 Sum_probs=47.5
Q ss_pred hhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008246 481 FVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 549 (572)
Q Consensus 481 ~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~ 549 (572)
+++.+..++|+...+.-++ .+|.+. .....|-..|+-.|++++|...++-+-+++|++...
T Consensus 11 LL~~~sL~dai~~a~~qVk----akPtda----~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVK----AKPTDA----GGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHHhccHHHHHHHHHHHHh----cCCccc----cchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 3444588999999999998 445433 233457778899999999999999999999998653
No 427
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=49.15 E-value=70 Score=29.33 Aligned_cols=55 Identities=24% Similarity=0.314 Sum_probs=44.7
Q ss_pred CCCCCchhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHhcccc
Q 008246 502 EPEEPKSKAHYYDGLVVLASALCNVG-RNAEAEKYLRLAAAHNPQYNELLEQLENN 556 (572)
Q Consensus 502 ~p~dp~~~~~~~~al~~Lg~~l~~~g-~~eeA~~~l~~aL~l~P~~~~~l~~l~~~ 556 (572)
.|.|+...+.|+..-+.+|..+...| +.+||..+|-+|+..-|+=.+++.-+.+.
T Consensus 79 ~p~d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~iyq~t 134 (148)
T TIGR00985 79 DPTDPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSIYQQT 134 (148)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHHHHHhh
Confidence 34455555667777788999999999 99999999999999999988877766653
No 428
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=49.08 E-value=36 Score=21.48 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 517 VVLASALCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 517 ~~Lg~~l~~~g~~eeA~~~l~~aL~l 542 (572)
..+-..|.+.|++++|.+.|++..+.
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 34677899999999999999997664
No 429
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=49.07 E-value=33 Score=27.91 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 486 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 486 ~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l 542 (572)
-|++|.+..+++++. -+.|+.++|+.+|+++++.
T Consensus 4 ~~~~A~~~I~kaL~~-----------------------dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 4 YYKQAFEEISKALRA-----------------------DEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHHHHHhhh-----------------------hhcCCHHHHHHHHHHHHHH
Confidence 567788877777772 2347777788888777663
No 430
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.65 E-value=76 Score=34.23 Aligned_cols=47 Identities=26% Similarity=0.253 Sum_probs=32.2
Q ss_pred HHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 494 LERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 494 l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~ 541 (572)
+.+...+..+..|.- ..+...++.-|.+.+.+|+.++|.++++.+..
T Consensus 249 l~Rl~~lKg~~spEr-aL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 249 LSRLRSLKGGQSPER-ALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hHhhhhccCCCChhH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 334444444444532 23445556779999999999999999998755
No 431
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=48.31 E-value=35 Score=22.61 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=20.9
Q ss_pred HHHHHHHH--HHHHHcC-----CHHHHHHHHHHHHH
Q 008246 403 INALILMG--QTQLQKG-----LLEEAVEYLECAIS 431 (572)
Q Consensus 403 ~~a~~~LG--~l~~~~g-----~~~eA~~~~~rAl~ 431 (572)
+++.+.+| .+|..-. +.++|..+|++|.+
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 46788888 5444433 47899999999886
No 432
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.90 E-value=47 Score=33.57 Aligned_cols=53 Identities=11% Similarity=0.138 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 486 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 486 ~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l 542 (572)
+.++|+.-|++++++ .+...+.-+.++-....+++.+|+++|-...|++.+..
T Consensus 42 ~p~~Al~sF~kVlel----EgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 42 EPKEALSSFQKVLEL----EGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred CHHHHHHHHHHHHhc----ccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 789999999999995 33334445678888889999999999999999887653
No 433
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=47.38 E-value=33 Score=22.26 Aligned_cols=28 Identities=32% Similarity=0.260 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHH
Q 008246 404 NALILMGQTQLQK----GLLEEAVEYLECAIS 431 (572)
Q Consensus 404 ~a~~~LG~l~~~~----g~~~eA~~~~~rAl~ 431 (572)
.+.+.||.+|..- .+.++|..+|++|.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 5677888887642 388999999999875
No 434
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=46.40 E-value=21 Score=28.78 Aligned_cols=21 Identities=38% Similarity=0.338 Sum_probs=14.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhh
Q 008246 413 QLQKGLLEEAVEYLECAISKL 433 (572)
Q Consensus 413 ~~~~g~~~eA~~~~~rAl~~l 433 (572)
+-..|++++|+.+|..|++.+
T Consensus 16 ~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 16 RDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHccCHHHHHHHHHHHHHHH
Confidence 345677777777777777754
No 435
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=46.24 E-value=18 Score=29.07 Aligned_cols=32 Identities=34% Similarity=0.537 Sum_probs=23.9
Q ss_pred ccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 386 ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 386 ~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
.+|+..+++|++.|- .|++++|..+|..+++.
T Consensus 4 ~~A~~l~~~Ave~d~---------------~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 4 EQAAELIRLALEKEE---------------EGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHH---------------HhhHHHHHHHHHHHHHH
Confidence 456666666666553 39999999999999974
No 436
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=45.12 E-value=31 Score=30.53 Aligned_cols=50 Identities=26% Similarity=0.294 Sum_probs=39.7
Q ss_pred CchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 506 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 506 p~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
+.....|+--.+.+|..+...|++++|..+|-+|+..-|+=.+++.-+.+
T Consensus 56 ~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q~ 105 (121)
T PF02064_consen 56 PEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQK 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 33344555566789999999999999999999999999998887776665
No 437
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=44.80 E-value=54 Score=34.61 Aligned_cols=47 Identities=28% Similarity=0.215 Sum_probs=42.3
Q ss_pred CCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008246 383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (572)
Q Consensus 383 g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rA 429 (572)
+..-+|+.+++.+++.+|.|......+-.+|...|-.+.|.+.|++.
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 34457899999999999999999999999999999999999999553
No 438
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=44.72 E-value=95 Score=28.15 Aligned_cols=56 Identities=25% Similarity=0.201 Sum_probs=37.3
Q ss_pred hhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 479 LSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 479 ~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l 542 (572)
..+..+|+-|+-.+.+....+ . .++ ....++.+|.+|.+.|+..+|.+.+++|.+.
T Consensus 94 d~lv~~~kkDqLdki~~~l~k-n--~~~-----~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKK-N--EEI-----NPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH--------S------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHhh-c--cCC-----CHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 445667777776677776654 1 111 1256778999999999999999999998764
No 439
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=44.62 E-value=1.6e+02 Score=32.19 Aligned_cols=41 Identities=20% Similarity=0.152 Sum_probs=35.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 391 LLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 391 ~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
-++.-++-||+|.-.|+.|-+-|..+|.+++-.+.|++...
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~ 70 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSS 70 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC
Confidence 56777888999999999999999999999999999988763
No 440
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=44.55 E-value=1.9e+02 Score=35.94 Aligned_cols=136 Identities=15% Similarity=0.063 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhH----HHHHh----
Q 008246 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFF----ELVQQ---- 473 (572)
Q Consensus 402 ~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~----~a~~~---- 473 (572)
..+..-.+|.+++..|++.+|+++|..|++.+ ...+ +.-....|+.+++.+..-.+..... ..+..
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~---k~~~---D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~ 314 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEIL---KSSN---DYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPI 314 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHH---hhcC---cHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCC
Confidence 35677788999999999999999999998752 1111 1112223444444444444422210 00000
Q ss_pred ----h----------------------------hhhHhh-hhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHH
Q 008246 474 ----G----------------------------QLKLLS-FVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA 520 (572)
Q Consensus 474 ----~----------------------------~~~~~~-~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg 520 (572)
. ...... -.-...+++|+.+|.++... +.++.-.-.|.++.+.++
T Consensus 315 ~~~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~--~~~~~p~lv~~E~~lr~~ 392 (1185)
T PF08626_consen 315 SSSTSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTND--TSEYVPQLVYSEACLRFA 392 (1185)
T ss_pred CCccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhcc--ccccCcchHHHHHHHHHH
Confidence 0 000000 11134679999999999741 223222224667777788
Q ss_pred HHHHHcC--------------------CHHHHHHHHHHHHHhCCC
Q 008246 521 SALCNVG--------------------RNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 521 ~~l~~~g--------------------~~eeA~~~l~~aL~l~P~ 545 (572)
..+.... ...++.+++.+++..+..
T Consensus 393 ~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~ 437 (1185)
T PF08626_consen 393 RFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLK 437 (1185)
T ss_pred HHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhh
Confidence 8877777 788899999998876643
No 441
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=44.26 E-value=39 Score=33.68 Aligned_cols=62 Identities=16% Similarity=0.059 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccccchH
Q 008246 490 GIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEE 559 (572)
Q Consensus 490 Ai~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~~~~~ 559 (572)
|+.+|.+|.. ..|.+. ..+..||.+....|+.=+|.-+|-+++...--+..+.+++...-++
T Consensus 1 A~~~Y~~A~~----l~P~~G----~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIR----LLPSNG----NPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHH----H-TTBS----HHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHH----hCCCCC----CcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6789999999 466654 4556799999999999999999999998775556666666654333
No 442
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=44.15 E-value=30 Score=26.93 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=18.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhh
Q 008246 409 MGQTQLQKGLLEEAVEYLECAISKL 433 (572)
Q Consensus 409 LG~l~~~~g~~~eA~~~~~rAl~~l 433 (572)
.|.-+-..|++++|+++|.+|++.+
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAIEYL 35 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3444556788888888888888754
No 443
>PF13041 PPR_2: PPR repeat family
Probab=43.69 E-value=47 Score=23.69 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Q 008246 515 GLVVLASALCNVGRNAEAEKYLRLAAAHN--PQY 546 (572)
Q Consensus 515 al~~Lg~~l~~~g~~eeA~~~l~~aL~l~--P~~ 546 (572)
.+..+-..+.+.|++++|.+.|++..+.. |+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~ 38 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDS 38 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 34567888999999999999999998765 553
No 444
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=43.47 E-value=49 Score=35.47 Aligned_cols=61 Identities=11% Similarity=-0.012 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI 430 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl 430 (572)
...-.+..+|+..++.+-|+....+.+-.+|.+..-|...|.+.....+|.+|...+--|.
T Consensus 229 fIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 229 FIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445788999999999999999999999999999999999999999999999998876665
No 445
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=42.46 E-value=3.5e+02 Score=31.74 Aligned_cols=70 Identities=14% Similarity=0.057 Sum_probs=52.3
Q ss_pred cccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHH
Q 008246 362 ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT---QLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 362 i~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l---~~~~g~~~eA~~~~~rAl~ 431 (572)
..+.+.+-..++.+-..+...|++++-...=+++-+..|..+..|..-..- ....++-.++...|++|+-
T Consensus 106 ~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~ 178 (881)
T KOG0128|consen 106 LAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG 178 (881)
T ss_pred hcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc
Confidence 344444445667778888889999988777778888888888887765432 3456888999999999995
No 446
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=42.09 E-value=1.4e+02 Score=30.67 Aligned_cols=46 Identities=24% Similarity=0.169 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008246 486 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 539 (572)
Q Consensus 486 ~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~a 539 (572)
.+.+|++..++++. .||-+...+ ..|-.+|...|+.-+|.++|++.
T Consensus 294 ~~neAi~l~qr~lt----ldpL~e~~n----k~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 294 KPNEAIQLHQRALT----LDPLSEQDN----KGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred ChHHHHHHHHHHhh----cChhhhHHH----HHHHHHHHHhccchhhhhHHHHH
Confidence 88888888888888 455444322 34667777888888888877764
No 447
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=41.67 E-value=43 Score=26.97 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008246 405 ALILMGQTQLQKGLLEEAVEYLECAISKL 433 (572)
Q Consensus 405 a~~~LG~l~~~~g~~~eA~~~~~rAl~~l 433 (572)
-+...|.-+-..|++++|+.+|++|++.+
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L 36 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIEVL 36 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 34445555678899999999999999853
No 448
>PHA01081 putative minor coat protein
Probab=41.58 E-value=53 Score=27.92 Aligned_cols=25 Identities=28% Similarity=0.483 Sum_probs=21.3
Q ss_pred hcCChHHHHHHHHHHHHHHhh--hhHH
Q 008246 117 FTGFPWWTIIVSSTVALRIAL--LPLI 141 (572)
Q Consensus 117 ~~glpW~~aIil~ti~vRl~l--lPl~ 141 (572)
..|++=..+||++++++|+.+ .|+.
T Consensus 74 ~iGlgq~lgII~aAI~iRl~LQLIPFv 100 (104)
T PHA01081 74 AIGIPQCLGMIMSAIIVRILLQLVPFT 100 (104)
T ss_pred HcCchhhHHHHHHHHHHHHHHhhccee
Confidence 478888999999999999984 7764
No 449
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=41.34 E-value=5.2e+02 Score=28.39 Aligned_cols=70 Identities=7% Similarity=0.074 Sum_probs=55.8
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
++.+.--+..++.++.-..-+...++-+.|....+++++..|. .++.++..|...+|-++--.||++..+
T Consensus 292 ~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 292 NQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHH
Confidence 5666666777777777777777888888888888887776665 788899999999998888888888765
No 450
>PF13041 PPR_2: PPR repeat family
Probab=40.47 E-value=73 Score=22.66 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 402 NINALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 402 ~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
|...|..+=..+.+.|++++|.+.|++..+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456777888899999999999999999886
No 451
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=40.21 E-value=33 Score=27.71 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=15.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhh
Q 008246 411 QTQLQKGLLEEAVEYLECAISKL 433 (572)
Q Consensus 411 ~l~~~~g~~~eA~~~~~rAl~~l 433 (572)
.-+-..|++++|+.+|.+|++.+
T Consensus 14 ve~D~~g~y~eAl~~Y~~aie~l 36 (77)
T cd02683 14 VELDQEGRFQEALVCYQEGIDLL 36 (77)
T ss_pred HHHHHhccHHHHHHHHHHHHHHH
Confidence 33456677788888887777753
No 452
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=39.88 E-value=72 Score=20.15 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 516 LVVLASALCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 516 l~~Lg~~l~~~g~~eeA~~~l~~aL~l 542 (572)
+..+-.++.+.|+.++|.+.+++..+.
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 345778889999999999999987664
No 453
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=39.79 E-value=33 Score=27.22 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=17.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 008246 410 GQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 410 G~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
|.-.-..|++++|+.+|..|++.
T Consensus 13 Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 13 AVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445559999999999999874
No 454
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=38.57 E-value=3.3e+02 Score=31.97 Aligned_cols=139 Identities=12% Similarity=0.011 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHH
Q 008246 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVA 451 (572)
Q Consensus 372 ~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a 451 (572)
.......--..|..++=+.-++.-+.+++.+...+..|=.++...|++++-...=+++.++ .|..+
T Consensus 82 ~~ds~sD~s~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-----~pl~~--------- 147 (881)
T KOG0128|consen 82 SMDSDSDSSNEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-----APLPP--------- 147 (881)
T ss_pred cccccCCccccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHh-----cCCCh---------
Confidence 3333333345566666788888899999999999999999999999998877666666554 33332
Q ss_pred HHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHH
Q 008246 452 SQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAE 531 (572)
Q Consensus 452 ~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~ee 531 (572)
+.|+-.+.-.+. .-..++-.++...|++++. +..++.....+.+-.+-.+.++...++++.
T Consensus 148 ~lWl~Wl~d~~~-----------------mt~s~~~~~v~~~~ekal~--dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~ 208 (881)
T KOG0128|consen 148 HLWLEWLKDELS-----------------MTQSEERKEVEELFEKALG--DYNSVPIWEEVVNYLVGFGNVAKKSEDYKK 208 (881)
T ss_pred HHHHHHHHHHHh-----------------hccCcchhHHHHHHHHHhc--ccccchHHHHHHHHHHhccccccccccchh
Confidence 222221111111 0011256777788888876 233343333332222333444455677777
Q ss_pred HHHHHHHHHHhC
Q 008246 532 AEKYLRLAAAHN 543 (572)
Q Consensus 532 A~~~l~~aL~l~ 543 (572)
-+..+.++++--
T Consensus 209 ~R~vf~ral~s~ 220 (881)
T KOG0128|consen 209 ERSVFERALRSL 220 (881)
T ss_pred hhHHHHHHHhhh
Confidence 788888877643
No 455
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=38.54 E-value=6.1e+02 Score=28.39 Aligned_cols=163 Identities=13% Similarity=0.105 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHH-hhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLAL-NKEPDN-INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL-~~dP~~-~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
-.+..+..+++.|+.++|..++++.= ++.|.. .+.-...|.+...+.++..|.+.+.+-.. . .....
T Consensus 65 ~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~--------~---~ls~~ 133 (604)
T COG3107 65 WLLLAARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLP--------A---DLSQN 133 (604)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcch--------h---hcCHH
Confidence 34556777889999999999999865 555544 45556778999999999999999976542 1 11112
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHH----hhhhhHhhhhhhccHHHHHHHHHHHhc---CCCCCCCchhhhhhHHHHHHHH
Q 008246 449 IVASQWSGVACIRQAAHNFFELVQ----QGQLKLLSFVSQEKWEEGIAHLERIGN---LKEPEEPKSKAHYYDGLVVLAS 521 (572)
Q Consensus 449 ~~a~~~lG~~~~~~g~~~~~~a~~----~~~~~~~~~~~~g~~~eAi~~l~kal~---l~~p~dp~~~~~~~~al~~Lg~ 521 (572)
-.+.++.+.+-...++.+..++++ .+.++...- .+.+.|.-...+..-+. +....|+++ .-...|+.|+.
T Consensus 134 Qq~Ry~q~~a~a~ea~~~~~~a~rari~~~~lL~~k~-~q~nid~tW~ll~~~~~~~VIn~sa~e~~--~~L~GWL~L~r 210 (604)
T COG3107 134 QQARYYQARADALEARGDSIDAARARIAQDPLLSGKA-KQANIDKTWQLLSEQANTGVINNSADEGN--AALQGWLDLAR 210 (604)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHhhhhccchh-HHHhHHHHHHHhhhhccccceecccCCcc--cccchHHHHHH
Confidence 234555555555555434433332 222222111 22222222222221000 000112221 13457788999
Q ss_pred HHHHcCCHH-HHHHHHHHHHHhCCCCH
Q 008246 522 ALCNVGRNA-EAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 522 ~l~~~g~~e-eA~~~l~~aL~l~P~~~ 547 (572)
+|...|+-- .=.+-.+.-...+|++.
T Consensus 211 v~~~~~~~p~qlk~~i~~Wq~~yPqhP 237 (604)
T COG3107 211 VYKDNGSDPPQLKAGIEDWQKRYPQHP 237 (604)
T ss_pred HHHhcccCHHHHHHHHHHHHhcCCCCc
Confidence 999987544 34444555556677664
No 456
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.23 E-value=63 Score=35.27 Aligned_cols=56 Identities=25% Similarity=0.290 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVE 424 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~ 424 (572)
.+..+++|.....+|+|.-+.+.+++++-.||+|..|....+.++.+.|--.|+..
T Consensus 452 adrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A~ 507 (655)
T COG2015 452 ADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAESAT 507 (655)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhccch
Confidence 55678999999999999999999999999999999999999999999997776654
No 457
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=37.27 E-value=73 Score=24.72 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHH
Q 008246 372 LIALSVKFLSKGDKERPIPLLQLA 395 (572)
Q Consensus 372 ~~~lA~~~~~~g~~~~A~~~l~~A 395 (572)
+...|..+-+.|++++|+.+|+++
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~a 31 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEA 31 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344455555555555555554443
No 458
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=36.91 E-value=37 Score=27.61 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=26.2
Q ss_pred CCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008246 383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (572)
Q Consensus 383 g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l 433 (572)
+.+++|.++..+||+.| +.|+.++|+.+|+++++.+
T Consensus 3 ~~~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~~l 38 (79)
T cd02679 3 GYYKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLREL 38 (79)
T ss_pred hHHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHHHH
Confidence 45666777777776655 3478888999999888754
No 459
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=36.52 E-value=82 Score=35.50 Aligned_cols=64 Identities=19% Similarity=0.245 Sum_probs=56.5
Q ss_pred cccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008246 362 ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLE 427 (572)
Q Consensus 362 i~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~ 427 (572)
++.+..++...+..|..+.+-|+.++|-++|++.+..+|+ ++++..++-+.+.|-..+|...++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 35 LPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred CCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 4455567778899999999999999999999999999999 788899999999999999998886
No 460
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=35.76 E-value=66 Score=35.79 Aligned_cols=56 Identities=14% Similarity=-0.039 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhh
Q 008246 401 DNINALILMGQTQL--QKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQA 463 (572)
Q Consensus 401 ~~~~a~~~LG~l~~--~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g 463 (572)
.++.|+.+||.+-. ...+-..+++.|++|+.... .. ..+.....|..+|-.+++.+
T Consensus 275 ~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~---~~----Y~n~HvYPYty~gg~~yR~~ 332 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPTPGRPTPLELFNEAISSAR---TY----YNNHHVYPYTYLGGYYYRHK 332 (618)
T ss_dssp T-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHH---HH----CTT--SHHHHHHHHHHHHTT
T ss_pred hCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHH---HH----hcCCccccceehhhHHHHHH
Confidence 34566666665542 23446678888888886310 00 11222235667787788888
No 461
>PLN02294 cytochrome c oxidase subunit Vb
Probab=34.72 E-value=94 Score=29.09 Aligned_cols=11 Identities=9% Similarity=0.205 Sum_probs=9.2
Q ss_pred hHHHHHHHHhh
Q 008246 3 TAKLLLLQLRR 13 (572)
Q Consensus 3 ~~~~~~~~~~~ 13 (572)
-||++.|+||+
T Consensus 2 wRr~~ss~L~~ 12 (174)
T PLN02294 2 WRRIVSSHLKT 12 (174)
T ss_pred hhhHHHHHHHH
Confidence 37888899999
No 462
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=34.38 E-value=2.5e+02 Score=29.21 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=62.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHH-HHHHHHHhhchhhHH
Q 008246 391 LLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW-SGVACIRQAAHNFFE 469 (572)
Q Consensus 391 ~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~-lG~~~~~~g~~~~~~ 469 (572)
.|.++-..-|+|+..|...+.-....|-+.+-...|.+++.+ +|.+.+- |.. -..-+...+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k-----hP~nvdl-------WI~~c~~e~~~~a------ 156 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTK-----HPLNVDL-------WIYCCAFELFEIA------ 156 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCcee-------eeeeccchhhhhc------
Confidence 345556678999999999998888999999999999999975 7876511 111 112223333
Q ss_pred HHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhh
Q 008246 470 LVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYY 513 (572)
Q Consensus 470 a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~ 513 (572)
+.+.+...+.+++++ +|+.|.-...|+
T Consensus 157 ----------------ni~s~Ra~f~~glR~-N~~~p~iw~eyf 183 (435)
T COG5191 157 ----------------NIESSRAMFLKGLRM-NSRSPRIWIEYF 183 (435)
T ss_pred ----------------cHHHHHHHHHhhhcc-CCCCchHHHHHH
Confidence 899999999999995 355665444443
No 463
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.87 E-value=3.8e+02 Score=32.80 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 402 NINALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 402 ~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
.....+.+|.+|...|+.-+|+.+|.+|..
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~S 948 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALS 948 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhh
Confidence 345667777778888888888888877775
No 464
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=33.61 E-value=4.4e+02 Score=25.35 Aligned_cols=149 Identities=14% Similarity=0.076 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHH-----hcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHH-----HcCC--HHHHHHHHHHHHHhhh
Q 008246 367 LTPKELIALSVKFL-----SKGDKERPIPLLQLALNKEPDNINALILMGQTQL-----QKGL--LEEAVEYLECAISKLF 434 (572)
Q Consensus 367 ~~~~~~~~lA~~~~-----~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~-----~~g~--~~eA~~~~~rAl~~l~ 434 (572)
..+...+..|.-++ ..++...|++.++.+-. -+++.+-..+|.++. +.++ .++|++++.||-++
T Consensus 66 ~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl-- 141 (248)
T KOG4014|consen 66 SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL-- 141 (248)
T ss_pred CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC--
Confidence 34566677766654 34566678888887765 678889888988874 3334 78899999999863
Q ss_pred hcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHH--hh-hhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhh
Q 008246 435 LAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQ--QG-QLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAH 511 (572)
Q Consensus 435 ~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~--~~-~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~ 511 (572)
.+. .+-+++... +..|..++..+.. -. ..+...+....+.+.|.+.--+|-++. .|
T Consensus 142 -----~~~-------~aCf~LS~m-~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~---~~----- 200 (248)
T KOG4014|consen 142 -----EDG-------EACFLLSTM-YMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD---IP----- 200 (248)
T ss_pred -----CCc-------hHHHHHHHH-HhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC---Ch-----
Confidence 111 111222221 2222122211110 00 112223344458899999988988863 33
Q ss_pred hhHHHHHHHHHHHHc----CCHHHHHHHHHHHHHh
Q 008246 512 YYDGLVVLASALCNV----GRNAEAEKYLRLAAAH 542 (572)
Q Consensus 512 ~~~al~~Lg~~l~~~----g~~eeA~~~l~~aL~l 542 (572)
.+..++...|..- .+-++|+.+-++|.++
T Consensus 201 --~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 201 --QACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred --HHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 2344555555432 3567788888877664
No 465
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=32.97 E-value=2e+02 Score=32.48 Aligned_cols=72 Identities=14% Similarity=0.064 Sum_probs=57.7
Q ss_pred HHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHH
Q 008246 378 KFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV 457 (572)
Q Consensus 378 ~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~ 457 (572)
.+.++...++|....+.-+.-....+...+.-+..+-..|+.++|-++|++.+++ +|++ +++..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---------~~~~~~~ 82 (578)
T PRK15490 17 TLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQ-----NNDE---------ARYEYAR 82 (578)
T ss_pred HHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHh-----CCcc---------hHHHHHH
Confidence 3456778888999999888888888999999999999999999999999999975 4432 3455566
Q ss_pred HHHHhh
Q 008246 458 ACIRQA 463 (572)
Q Consensus 458 ~~~~~g 463 (572)
-+.+.|
T Consensus 83 ~~~~~~ 88 (578)
T PRK15490 83 RLYNTG 88 (578)
T ss_pred HHHhhh
Confidence 666666
No 466
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=32.00 E-value=1.1e+02 Score=27.87 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccccchHH
Q 008246 514 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEEF 560 (572)
Q Consensus 514 ~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~~~~~~ 560 (572)
+..+..+......|++.-|.+..+.++..||++.+..+...+..+.+
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l 117 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL 117 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 34455777788899999999999999999999988766665544443
No 467
>PF15050 SCIMP: SCIMP protein
Probab=31.72 E-value=43 Score=29.26 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCCC
Q 008246 124 TIIVSSTVALRIALLPLIVLQLKKIQRIAELLPR 157 (572)
Q Consensus 124 ~aIil~ti~vRl~llPl~i~~~~~~~k~~~l~P~ 157 (572)
++||++.+++-++++-+.-++.|..+|-...+|.
T Consensus 14 VaII~vS~~lglIlyCvcR~~lRqGkkweiakp~ 47 (133)
T PF15050_consen 14 VAIILVSVVLGLILYCVCRWQLRQGKKWEIAKPL 47 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccceeccch
Confidence 4667777777777777776777766665544443
No 468
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=31.71 E-value=59 Score=25.79 Aligned_cols=21 Identities=38% Similarity=0.344 Sum_probs=16.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhh
Q 008246 413 QLQKGLLEEAVEYLECAISKL 433 (572)
Q Consensus 413 ~~~~g~~~eA~~~~~rAl~~l 433 (572)
+-..|++++|+.+|.+|++.+
T Consensus 18 ~d~~g~~~eAl~~Y~~a~e~l 38 (77)
T smart00745 18 ADEAGDYEEALELYKKAIEYL 38 (77)
T ss_pred HHHcCCHHHHHHHHHHHHHHH
Confidence 344788888888888888754
No 469
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.69 E-value=2.3e+02 Score=30.80 Aligned_cols=107 Identities=14% Similarity=0.026 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHh-----------hCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHH
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALN-----------KEPDNINALILMGQTQLQKGL----------LEEAVEYLEC 428 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~-----------~dP~~~~a~~~LG~l~~~~g~----------~~eA~~~~~r 428 (572)
-.+++.|..++...+|++|..++-.|=+ .--+.+-.....-++|++..+ ...|.+.|.+
T Consensus 164 lg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~ 243 (568)
T KOG2561|consen 164 LGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFER 243 (568)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhh
Confidence 3567888899999999999877655533 333444444445566776665 3344444444
Q ss_pred HHH----hhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 429 AIS----KLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 429 Al~----~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
+.- .+..-..+..| +.....+.+...|...+.+| +-++|.++++.+..
T Consensus 244 syGenl~Rl~~lKg~~sp-EraL~lRL~LLQGV~~yHqg----------------------~~deAye~le~a~~ 295 (568)
T KOG2561|consen 244 SYGENLSRLRSLKGGQSP-ERALILRLELLQGVVAYHQG----------------------QRDEAYEALESAHA 295 (568)
T ss_pred hhhhhhHhhhhccCCCCh-hHHHHHHHHHHHHHHHHHcC----------------------CcHHHHHHHHHHHH
Confidence 321 11111123333 22222233444477777777 77777777777653
No 470
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=31.48 E-value=6.1e+02 Score=27.28 Aligned_cols=29 Identities=24% Similarity=0.105 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 514 DGLVVLASALCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 514 ~al~~Lg~~l~~~g~~eeA~~~l~~aL~l 542 (572)
...+..+.++...|.+.+|...+-+....
T Consensus 301 R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 301 RCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 34455666677777777766666555544
No 471
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=31.30 E-value=75 Score=25.62 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHh
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALN 397 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~ 397 (572)
..+...|..+-..|++++|+.+|+++++
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455566666666666666666665543
No 472
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=31.17 E-value=63 Score=33.86 Aligned_cols=65 Identities=23% Similarity=0.111 Sum_probs=48.4
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008246 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (572)
Q Consensus 374 ~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~ 443 (572)
..+...+..+++..|+..-..+++.++....+++..|..+....++++|++.++.|... .|++.+
T Consensus 280 n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~-----~p~d~~ 344 (372)
T KOG0546|consen 280 NLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK-----APNDKA 344 (372)
T ss_pred chHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc-----CcchHH
Confidence 35666667777777777777777777888888888888888888888888888777754 666653
No 473
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=30.94 E-value=7.1e+02 Score=26.88 Aligned_cols=139 Identities=14% Similarity=0.127 Sum_probs=84.3
Q ss_pred HHHHHhcCCcc-cHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 376 SVKFLSKGDKE-RPIPLLQLALNKEPDNINALILMGQTQLQKG------------LLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 376 A~~~~~~g~~~-~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g------------~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
-....+.|.++ +++..=.+.+..+|+...+|...=.++...- -.++-+.+.+.++.. +|++.
T Consensus 35 i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~-----npksY 109 (421)
T KOG0529|consen 35 IQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKV-----NPKSY 109 (421)
T ss_pred HHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHh-----CchhH
Confidence 33445567776 4788888999999999999986555543322 244555556666654 44431
Q ss_pred hhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHH
Q 008246 443 EAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA 522 (572)
Q Consensus 443 ~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~ 522 (572)
.+|+....++.+.+.. ++..=++..+++++ .||+|--.|.--....+.+
T Consensus 110 -------~aW~hR~w~L~~~p~~--------------------~~~~EL~lcek~L~----~D~RNfh~W~YRRfV~~~~ 158 (421)
T KOG0529|consen 110 -------GAWHHRKWVLQKNPHS--------------------DWNTELQLCEKALK----QDPRNFHAWHYRRFVVEQA 158 (421)
T ss_pred -------HHHHHHHHHHHhCCCc--------------------hHHHHHHHHHHHHh----cCcccccchHHHHHHHHHH
Confidence 3677777777666611 45667788889988 5666533322222223333
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008246 523 LCNVGRNAEAEKYLRLAAAHNPQYNELL 550 (572)
Q Consensus 523 l~~~g~~eeA~~~l~~aL~l~P~~~~~l 550 (572)
-.......+=+++..+++..|+.+..++
T Consensus 159 ~~~~~~~~~El~ftt~~I~~nfSNYsaW 186 (421)
T KOG0529|consen 159 ERSRNLEKEELEFTTKLINDNFSNYSAW 186 (421)
T ss_pred hcccccchhHHHHHHHHHhccchhhhHH
Confidence 3333334556788888888888765433
No 474
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=30.81 E-value=3.9e+02 Score=23.90 Aligned_cols=28 Identities=11% Similarity=0.067 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 405 ALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 405 a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
-+..+|....+.+++-.++-+|++|+.+
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 3678899999999999999999999985
No 475
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.47 E-value=3.8e+02 Score=30.43 Aligned_cols=19 Identities=21% Similarity=0.055 Sum_probs=14.1
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 008246 521 SALCNVGRNAEAEKYLRLA 539 (572)
Q Consensus 521 ~~l~~~g~~eeA~~~l~~a 539 (572)
.+|...|+++++.+.+...
T Consensus 729 ~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHcCCHHHHHHHHHhc
Confidence 3577788998888877654
No 476
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=30.13 E-value=1.5e+02 Score=21.22 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=15.2
Q ss_pred hHHHHHHHHH-HHHHHh-hhhHHHHHHHH
Q 008246 121 PWWTIIVSST-VALRIA-LLPLIVLQLKK 147 (572)
Q Consensus 121 pW~~aIil~t-i~vRl~-llPl~i~~~~~ 147 (572)
|-|++.+... +++-++ -+-+.|+|...
T Consensus 2 p~wlt~iFsvvIil~If~~iGl~IyQkik 30 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGIFAWIGLSIYQKIK 30 (49)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5455544444 444443 37888887654
No 477
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=30.05 E-value=65 Score=25.65 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=16.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhh
Q 008246 411 QTQLQKGLLEEAVEYLECAISKL 433 (572)
Q Consensus 411 ~l~~~~g~~~eA~~~~~rAl~~l 433 (572)
.-.-..|++++|+.+|.+|++.+
T Consensus 14 v~~D~~g~y~eA~~~Y~~aie~l 36 (75)
T cd02678 14 IEEDNAGNYEEALRLYQHALEYF 36 (75)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHH
Confidence 33456788888888888888753
No 478
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=30.01 E-value=97 Score=24.95 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHH
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLA 395 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~A 395 (572)
.++..|..+-..|++++|+.+|.++
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y~~a 32 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCYQEG 32 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444444455555555555554443
No 479
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=29.96 E-value=5.1e+02 Score=27.25 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=42.7
Q ss_pred HHHHHHHHHH-hcCCcccHHHHHHHHHhhC----CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 371 ELIALSVKFL-SKGDKERPIPLLQLALNKE----PDNI--NALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 371 ~~~~lA~~~~-~~g~~~~A~~~l~~AL~~d----P~~~--~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
..++.+.... +.++.++|++++++..+.- -.++ ......|.+++..||.+++.+.+...-..
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ 144 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSM 144 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3344433333 3468999999999887642 2123 33446788999999999999999888764
No 480
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=29.71 E-value=53 Score=26.47 Aligned_cols=34 Identities=32% Similarity=0.306 Sum_probs=23.8
Q ss_pred cccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008246 385 KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (572)
Q Consensus 385 ~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l 433 (572)
.++|+.+.++|++. -..|++++|..+|..|++..
T Consensus 3 l~kai~Lv~~A~~e---------------D~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 3 LERAHFLVTQAFDE---------------DEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHHHHh---------------hHhhhHHHHHHHHHHHHHHH
Confidence 34566666666443 35688899999999998853
No 481
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=29.70 E-value=5.5e+02 Score=29.35 Aligned_cols=89 Identities=18% Similarity=0.213 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCHHHHhhhCCCCCCCCCCCCCCccccccccccCCchhhhccccCCCC---HHHHHHHHHHHHhcCCccc
Q 008246 311 SFSIVQQLALKHPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLT---PKELIALSVKFLSKGDKER 387 (572)
Q Consensus 311 ~~sl~Q~~~lr~~~~r~~lgip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~~~---~~~~~~lA~~~~~~g~~~~ 387 (572)
+...+-.+++....+...||--.. +....+..+.- +..-|..+..+ -+.....|..+..+|++++
T Consensus 365 ~~~~l~eLvletref~~LLG~i~~---dG~r~~G~i~~---------~~~Li~~~~~~~~~~~i~~~~A~~~e~~g~~~d 432 (613)
T PF04097_consen 365 FHECLRELVLETREFDLLLGDINP---DGSRTPGLIER---------RLSLIKFDDDEDFLREIIEQAAREAEERGRFED 432 (613)
T ss_dssp HHHHHHHHHHHH--HHHHHEEE-T---TS-EEE-HHHH---------TGGGGT-SSSSHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHccCCHHHHCCCCCC---CCccccceeec---------cccccCCCCcHHHHHHHHHHHHHHHHHCCCHHH
Confidence 567777788888888889984222 22222222220 00112222222 2234566777888999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 388 PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 388 A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
|+.+|+-| |+++.+++.+.+.+..
T Consensus 433 Ai~Ly~La---------------------~~~d~vl~lln~~Ls~ 456 (613)
T PF04097_consen 433 AILLYHLA---------------------EEYDKVLSLLNRLLSQ 456 (613)
T ss_dssp HHHHHHHT---------------------T-HHHHHHHHHHHHHH
T ss_pred HHHHHHHH---------------------hhHHHHHHHHHHHHHH
Confidence 98887655 3888888888888763
No 482
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=29.30 E-value=4.3e+02 Score=28.76 Aligned_cols=17 Identities=6% Similarity=0.114 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHhhhcC
Q 008246 103 PVRALISFLDTYHDFTG 119 (572)
Q Consensus 103 pv~~v~~~l~~lh~~~g 119 (572)
-+..+.++|.++|...+
T Consensus 5 ~~~Pvs~vm~~~h~~~~ 21 (429)
T PRK00247 5 FIYPVSGVMKLWHLLLH 21 (429)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35678999999998666
No 483
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=28.78 E-value=1.3e+02 Score=34.20 Aligned_cols=68 Identities=16% Similarity=0.085 Sum_probs=39.8
Q ss_pred HhhhHHHHHHHHHHc------CHHHHhhhCCCCCCCCCCCCCCccccccccccCCchhhhccccCCCCHHHHHHHHHHH
Q 008246 307 VTNSSFSIVQQLALK------HPASRTMLGLPDKVVPAAARKPEEIDTLETTLESPAKQLKISVENLTPKELIALSVKF 379 (572)
Q Consensus 307 i~s~~~sl~Q~~~lr------~~~~r~~lgip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~~~lA~~~ 379 (572)
.---+|-.+|.++-. +.-+||........+.+..++.+-++.+++ .|-..|-.|....+.++..|..+
T Consensus 669 TDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~-----~KAi~i~~d~gW~d~lidI~rkl 742 (1081)
T KOG1538|consen 669 TDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEH-----VKAIEICGDHGWVDMLIDIARKL 742 (1081)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccch-----hhhhhhhhcccHHHHHHHHHhhc
Confidence 445677888887643 234566666666677777777777776654 11122334555555555555443
No 484
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=28.03 E-value=5.9e+02 Score=25.09 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC-HHHHHHHHHHH
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN-INALILMGQTQ 413 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~-~~a~~~LG~l~ 413 (572)
+.++.+|..+.+.|++++.+.+.++++..+++- .+=...+..+|
T Consensus 2 e~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 2 EELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 457788889999999999999999999998764 34455555554
No 485
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=27.57 E-value=1.5e+02 Score=31.41 Aligned_cols=11 Identities=0% Similarity=0.002 Sum_probs=5.0
Q ss_pred HHHHHHHHHHh
Q 008246 105 RALISFLDTYH 115 (572)
Q Consensus 105 ~~v~~~l~~lh 115 (572)
..+.+++.++|
T Consensus 110 ~P~~~il~~i~ 120 (357)
T PRK02201 110 YPIAQIILSIM 120 (357)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 486
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.52 E-value=1.4e+02 Score=26.89 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHH
Q 008246 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINAL 406 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~ 406 (572)
.++|..++.+|+.+++..++-.||...|.-.+.+
T Consensus 85 v~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL 118 (143)
T KOG4056|consen 85 VQLGEELLAQGNEEEGAEHLANAIVVCGQPAQLL 118 (143)
T ss_pred HHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHH
Confidence 6789999999999999999988888877665543
No 487
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=27.35 E-value=78 Score=25.01 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHh
Q 008246 372 LIALSVKFLSKGDKERPIPLLQLALN 397 (572)
Q Consensus 372 ~~~lA~~~~~~g~~~~A~~~l~~AL~ 397 (572)
+...|...-..|++++|+.+|..|++
T Consensus 9 l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 9 LIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555566666666666655544
No 488
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=27.29 E-value=21 Score=40.06 Aligned_cols=43 Identities=23% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008246 388 PIPLLQLALNKEPDN-INALILMGQTQLQKGLLEEAVEYLECAI 430 (572)
Q Consensus 388 A~~~l~~AL~~dP~~-~~a~~~LG~l~~~~g~~~eA~~~~~rAl 430 (572)
|..++++|=+..+.. ......-+..+.+.|+++.|...+.+.-
T Consensus 8 A~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~ 51 (536)
T PF04348_consen 8 AEQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLD 51 (536)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcc
Confidence 444444544444432 2333344566677777777776665443
No 489
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=26.87 E-value=78 Score=32.73 Aligned_cols=47 Identities=19% Similarity=0.082 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 486 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 486 ~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
.-++|+.+|++|+. ..+.|..-+|+..|+.|+++.|+.+-....++.
T Consensus 15 ~~kkA~~l~~~av~-----------------------~Eq~G~l~dai~fYR~AlqI~~diEs~~r~l~~ 61 (366)
T KOG2997|consen 15 LAKKAIALYEKAVL-----------------------KEQDGSLYDAINFYRDALQIVPDIESKYRYLRS 61 (366)
T ss_pred HHHHHHHHHHHHHH-----------------------HhhcCcHHHHHHHHHhhhcCCchHHHHHHHHhh
Confidence 44778888888876 225688899999999999999997665554443
No 490
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.69 E-value=6.9e+02 Score=26.41 Aligned_cols=38 Identities=13% Similarity=0.023 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 518 VLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 518 ~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
.-|..+.-.|++-++..++++++-+.|+...+.++...
T Consensus 218 l~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~~qY~~ 255 (449)
T COG3014 218 LSGLFYALNGDVNKGLGYLNEAYGISQDQSPFVAQYLV 255 (449)
T ss_pred HHHHhcccCccHhHHHHHHHHHhccCchhhHHHHHhcc
Confidence 35666777789999999999999999997766655443
No 491
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=25.67 E-value=1e+02 Score=27.67 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQ 413 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~ 413 (572)
.+-.+=..++.+-+.+.|+..|++.++..|++-.+|..+-+..
T Consensus 78 aLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 78 ALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 3344445566777888999999999999999999988775543
No 492
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=25.19 E-value=83 Score=25.19 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=15.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhh
Q 008246 413 QLQKGLLEEAVEYLECAISKL 433 (572)
Q Consensus 413 ~~~~g~~~eA~~~~~rAl~~l 433 (572)
.-..|++++|..+|.+|++.+
T Consensus 16 ~D~~g~y~eA~~lY~~ale~~ 36 (75)
T cd02684 16 KDQRGDAAAALSLYCSALQYF 36 (75)
T ss_pred HHHhccHHHHHHHHHHHHHHH
Confidence 446788888888888888753
No 493
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=25.06 E-value=1.7e+02 Score=18.57 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 008246 388 PIPLLQLALNKEPDNINALILMGQTQL 414 (572)
Q Consensus 388 A~~~l~~AL~~dP~~~~a~~~LG~l~~ 414 (572)
.+.+..+++..||+|..+|...=.+..
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHH
Confidence 456788999999999999987766544
No 494
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=25.03 E-value=1.4e+02 Score=23.54 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 008246 419 LEEAVEYLECAIS 431 (572)
Q Consensus 419 ~~eA~~~~~rAl~ 431 (572)
|.+|++.|.+++.
T Consensus 31 Y~~a~e~l~~~~~ 43 (77)
T smart00745 31 YKKAIEYLLEGIK 43 (77)
T ss_pred HHHHHHHHHHHhc
Confidence 4455566666664
No 495
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=24.35 E-value=3.2e+02 Score=20.80 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 514 DGLVVLASALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 514 ~al~~Lg~~l~~~g~~eeA~~~l~~aL~ 541 (572)
.-++..-.-|.+.|++++|.++.++..+
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3345566778899999999999988654
No 496
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.34 E-value=9.2e+02 Score=26.04 Aligned_cols=49 Identities=12% Similarity=0.088 Sum_probs=41.9
Q ss_pred CcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHh
Q 008246 384 DKERPIPLLQLALNKEPDNINALILMGQTQLQKGL--LEEAVEYLECAISK 432 (572)
Q Consensus 384 ~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~--~~eA~~~~~rAl~~ 432 (572)
-.++-+.+...+++.+|++..+|+..-.++.+.+. +..=++..+++++.
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~ 140 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQ 140 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 46667888899999999999999999999987775 57778888899874
No 497
>COG1422 Predicted membrane protein [Function unknown]
Probab=22.88 E-value=1.3e+02 Score=29.02 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhCCCCCCCCC
Q 008246 121 PWWTIIVSSTVALRIAL-LPLIVLQLKKIQRIAELLPRLPPPFP 163 (572)
Q Consensus 121 pW~~aIil~ti~vRl~l-lPl~i~~~~~~~k~~~l~P~l~~i~~ 163 (572)
|--++|+++++++=+.+ ++= +-.-...||+++|.++++.|+
T Consensus 45 ~p~lvilV~avi~gl~~~i~~--~~liD~ekm~~~qk~m~efq~ 86 (201)
T COG1422 45 PPHLVILVAAVITGLYITILQ--KLLIDQEKMKELQKMMKEFQK 86 (201)
T ss_pred ccHHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHHHHHHH
Confidence 44456666666655542 221 111234455555555555554
No 498
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=22.67 E-value=7.8e+02 Score=24.60 Aligned_cols=88 Identities=13% Similarity=0.024 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhhhhcCCCCChh
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNK-----EPDNINALILMGQTQLQKGLLE-EAVEYLECAISKLFLAGHPTEPE 443 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~-----dP~~~~a~~~LG~l~~~~g~~~-eA~~~~~rAl~~l~~~~~P~~~~ 443 (572)
+.++.=|..+++.|+...|..+..-.++. .+.+.+..-.+..+....+.-+ +-.+..++|+.- +..+.+...
T Consensus 11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~W-S~~~~~~~G- 88 (260)
T PF04190_consen 11 DLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKW-SKFGSYKFG- 88 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHH-HHTSS-TT--
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH-HccCCCCCC-
Confidence 44566677788888888876665544443 3555566667777777665544 445555566642 111111111
Q ss_pred hhhHHHHHHHHHHHHHHHhh
Q 008246 444 AIDLLIVASQWSGVACIRQA 463 (572)
Q Consensus 444 ~~~~~~~a~~~lG~~~~~~g 463 (572)
+ ...|..+|..+.+.|
T Consensus 89 d----p~LH~~~a~~~~~e~ 104 (260)
T PF04190_consen 89 D----PELHHLLAEKLWKEG 104 (260)
T ss_dssp -----HHHHHHHHHHHHHTT
T ss_pred C----HHHHHHHHHHHHhhc
Confidence 1 124667788887777
No 499
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=22.14 E-value=1.8e+02 Score=31.93 Aligned_cols=108 Identities=14% Similarity=0.004 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008246 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~ 445 (572)
+.+|.-....+......|+|++|.+.+..+-..-..-..+...+-.-....|++++|...-+-.+. ++.|.+
T Consensus 320 ~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~--------~eie~~ 391 (831)
T PRK15180 320 QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLS--------NEIEDE 391 (831)
T ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhc--------cccCCh
Confidence 334445566677888889999988877665554444444555555667788889988877655442 111111
Q ss_pred hHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCc
Q 008246 446 DLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPK 507 (572)
Q Consensus 446 ~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~ 507 (572)
.. ....+.....+| -+|+|...+++.+.++.|.+.+
T Consensus 392 ei----~~iaa~sa~~l~----------------------~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 392 EV----LTVAAGSADALQ----------------------LFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred hh----eeeecccHHHHh----------------------HHHHHHHHHHHHhccCChhccc
Confidence 11 111122333444 6788888888888876555543
No 500
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=21.98 E-value=1.3e+02 Score=26.54 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHhhCCCCHH
Q 008246 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNIN 404 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~ 404 (572)
+.+|..+..+|++++|..+|-+|+...|+=.+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 57788888889888888888888888876443
Done!