Query 008246
Match_columns 572
No_of_seqs 518 out of 2741
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 21:38:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vtx_A MAMA; tetratricopeptide 99.8 1.6E-17 5.6E-22 154.7 18.6 160 368-547 4-175 (184)
2 2pl2_A Hypothetical conserved 99.8 1.2E-17 4E-22 161.6 17.7 154 359-555 29-193 (217)
3 4gyw_A UDP-N-acetylglucosamine 99.7 1.7E-17 5.7E-22 188.8 17.7 148 365-554 5-152 (723)
4 2pl2_A Hypothetical conserved 99.7 1.8E-16 6.1E-21 153.2 18.0 157 366-554 2-158 (217)
5 4i17_A Hypothetical protein; T 99.7 3.3E-16 1.1E-20 151.2 17.6 162 359-555 31-222 (228)
6 2h6f_A Protein farnesyltransfe 99.7 1.6E-16 5.5E-21 167.7 15.2 177 359-555 87-282 (382)
7 4ga2_A E3 SUMO-protein ligase 99.7 1.8E-17 6.3E-22 151.0 5.7 139 375-555 3-142 (150)
8 4i17_A Hypothetical protein; T 99.7 9.4E-16 3.2E-20 148.0 16.4 155 366-555 4-161 (228)
9 4gyw_A UDP-N-acetylglucosamine 99.7 3.2E-16 1.1E-20 178.2 14.3 146 358-545 32-177 (723)
10 3qky_A Outer membrane assembly 99.7 5E-15 1.7E-19 146.2 20.2 173 362-548 8-230 (261)
11 3urz_A Uncharacterized protein 99.7 1.3E-15 4.3E-20 146.2 15.1 142 368-547 3-191 (208)
12 2h6f_A Protein farnesyltransfe 99.6 9.1E-16 3.1E-20 162.0 14.5 180 359-559 121-321 (382)
13 4gco_A Protein STI-1; structur 99.6 1.6E-15 5.6E-20 134.0 13.5 120 394-555 4-123 (126)
14 1w3b_A UDP-N-acetylglucosamine 99.6 1.4E-14 4.9E-19 150.8 20.5 177 359-555 193-381 (388)
15 4gco_A Protein STI-1; structur 99.6 4.4E-15 1.5E-19 131.3 13.0 121 361-523 5-125 (126)
16 2q7f_A YRRB protein; TPR, prot 99.6 3.9E-14 1.3E-18 136.4 20.4 177 359-555 47-235 (243)
17 4abn_A Tetratricopeptide repea 99.6 5.6E-15 1.9E-19 160.1 16.1 157 359-555 127-300 (474)
18 3gyz_A Chaperone protein IPGC; 99.6 3.9E-15 1.3E-19 136.4 10.8 116 390-547 23-138 (151)
19 3ieg_A DNAJ homolog subfamily 99.6 7E-14 2.4E-18 142.0 20.9 186 360-558 145-351 (359)
20 3as5_A MAMA; tetratricopeptide 99.6 4.9E-14 1.7E-18 129.0 16.8 146 361-548 34-179 (186)
21 3hym_B Cell division cycle pro 99.6 3E-14 1E-18 143.4 16.6 176 360-555 116-312 (330)
22 3gyz_A Chaperone protein IPGC; 99.6 1.4E-14 4.8E-19 132.7 12.7 108 359-500 26-133 (151)
23 4eqf_A PEX5-related protein; a 99.6 3.3E-14 1.1E-18 146.6 16.9 180 359-551 89-285 (365)
24 2pzi_A Probable serine/threoni 99.6 4.5E-15 1.5E-19 168.2 11.3 148 363-553 427-574 (681)
25 3qou_A Protein YBBN; thioredox 99.6 2E-14 6.7E-19 145.2 13.5 148 366-555 114-263 (287)
26 4eqf_A PEX5-related protein; a 99.6 8.7E-14 3E-18 143.4 18.6 170 368-555 64-255 (365)
27 2vgx_A Chaperone SYCD; alterna 99.6 1.2E-14 4E-19 132.2 10.3 118 388-547 6-123 (148)
28 1w3b_A UDP-N-acetylglucosamine 99.5 9.5E-14 3.2E-18 144.6 18.2 177 359-555 159-347 (388)
29 2vsy_A XCC0866; transferase, g 99.5 6.9E-14 2.4E-18 154.4 18.1 154 359-554 13-169 (568)
30 3uq3_A Heat shock protein STI1 99.5 2E-13 6.7E-18 132.3 19.1 172 368-553 4-213 (258)
31 2vq2_A PILW, putative fimbrial 99.5 2.1E-13 7.3E-18 129.2 19.0 169 366-554 5-189 (225)
32 2yhc_A BAMD, UPF0169 lipoprote 99.5 3.5E-13 1.2E-17 130.5 20.5 88 367-463 2-92 (225)
33 4ga2_A E3 SUMO-protein ligase 99.5 2.1E-14 7.1E-19 130.6 10.7 128 359-528 21-149 (150)
34 2fo7_A Synthetic consensus TPR 99.5 2.4E-13 8.3E-18 117.2 17.0 134 370-545 2-135 (136)
35 2ho1_A Type 4 fimbrial biogene 99.5 3E-13 1E-17 131.5 19.6 172 364-555 31-217 (252)
36 4abn_A Tetratricopeptide repea 99.5 3.5E-14 1.2E-18 153.9 14.0 158 363-554 96-265 (474)
37 3hym_B Cell division cycle pro 99.5 1.7E-13 5.7E-18 137.9 18.0 184 360-555 81-278 (330)
38 3u4t_A TPR repeat-containing p 99.5 3.8E-14 1.3E-18 139.3 12.4 171 368-555 2-184 (272)
39 1fch_A Peroxisomal targeting s 99.5 3.1E-13 1E-17 138.7 19.5 179 359-551 88-289 (368)
40 3uq3_A Heat shock protein STI1 99.5 6.8E-14 2.3E-18 135.5 13.6 145 369-555 79-255 (258)
41 3ieg_A DNAJ homolog subfamily 99.5 4.9E-13 1.7E-17 135.7 20.2 165 374-554 125-313 (359)
42 1fch_A Peroxisomal targeting s 99.5 3.9E-13 1.3E-17 138.0 19.3 167 369-553 64-257 (368)
43 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.6E-13 8.7E-18 133.2 17.0 170 366-548 40-250 (275)
44 2vq2_A PILW, putative fimbrial 99.5 2.6E-13 8.8E-18 128.6 16.3 177 360-554 33-223 (225)
45 2xcb_A PCRH, regulatory protei 99.5 4.7E-14 1.6E-18 126.5 10.5 116 390-547 5-120 (142)
46 2ho1_A Type 4 fimbrial biogene 99.5 5.4E-13 1.9E-17 129.6 18.6 171 366-554 68-250 (252)
47 3u4t_A TPR repeat-containing p 99.5 9.2E-14 3.1E-18 136.6 12.8 174 369-556 74-264 (272)
48 2xpi_A Anaphase-promoting comp 99.5 5.3E-13 1.8E-17 146.6 20.0 176 360-555 398-592 (597)
49 3as5_A MAMA; tetratricopeptide 99.5 5E-13 1.7E-17 122.2 16.5 143 369-553 8-150 (186)
50 2vgx_A Chaperone SYCD; alterna 99.5 1.6E-13 5.4E-18 124.6 12.8 115 357-506 9-123 (148)
51 2xcb_A PCRH, regulatory protei 99.5 2.1E-13 7.2E-18 122.2 13.4 109 358-500 7-115 (142)
52 2e2e_A Formate-dependent nitri 99.5 2E-13 6.9E-18 126.3 13.6 128 379-548 20-150 (177)
53 3mkr_A Coatomer subunit epsilo 99.5 6.8E-13 2.3E-17 134.3 18.2 150 368-560 129-281 (291)
54 1hh8_A P67PHOX, NCF-2, neutrop 99.5 4.8E-13 1.6E-17 126.9 16.0 141 369-547 6-155 (213)
55 2q7f_A YRRB protein; TPR, prot 99.5 3.2E-13 1.1E-17 130.0 15.0 172 364-555 18-201 (243)
56 3mkr_A Coatomer subunit epsilo 99.5 1E-12 3.5E-17 133.1 18.0 145 365-554 97-241 (291)
57 3fp2_A TPR repeat-containing p 99.5 7.8E-13 2.7E-17 142.9 18.3 175 359-553 300-502 (537)
58 2r5s_A Uncharacterized protein 99.5 5.6E-14 1.9E-18 130.6 8.0 134 370-546 7-141 (176)
59 2y4t_A DNAJ homolog subfamily 99.5 1.2E-12 4.1E-17 138.3 19.2 183 360-555 168-371 (450)
60 2y4t_A DNAJ homolog subfamily 99.5 1.2E-12 4.2E-17 138.2 19.2 155 359-551 16-181 (450)
61 1qqe_A Vesicular transport pro 99.5 3.5E-13 1.2E-17 136.1 13.4 148 369-548 77-234 (292)
62 1a17_A Serine/threonine protei 99.4 1.7E-12 5.9E-17 117.3 16.0 135 368-542 12-146 (166)
63 3cv0_A Peroxisome targeting si 99.4 2.6E-12 9E-17 128.9 18.8 180 359-551 45-244 (327)
64 2lni_A Stress-induced-phosphop 99.4 1.7E-12 5.7E-17 112.6 15.1 125 362-528 9-133 (133)
65 3cv0_A Peroxisome targeting si 99.4 4.3E-12 1.5E-16 127.3 20.1 164 369-552 21-211 (327)
66 4gcn_A Protein STI-1; structur 99.4 4.7E-13 1.6E-17 118.1 11.5 104 369-499 8-111 (127)
67 1p5q_A FKBP52, FK506-binding p 99.4 5E-13 1.7E-17 138.2 13.4 142 359-542 137-294 (336)
68 2xpi_A Anaphase-promoting comp 99.4 2.3E-12 7.7E-17 141.5 19.4 179 361-554 365-557 (597)
69 2hr2_A Hypothetical protein; a 99.4 2.9E-13 9.9E-18 124.2 10.2 124 402-556 10-145 (159)
70 2gw1_A Mitochondrial precursor 99.4 2.5E-12 8.6E-17 137.7 19.1 176 359-554 294-490 (514)
71 3upv_A Heat shock protein STI1 99.4 1.4E-12 4.7E-17 113.7 13.8 98 368-499 3-100 (126)
72 3urz_A Uncharacterized protein 99.4 1.4E-12 4.7E-17 124.9 14.3 134 359-508 28-190 (208)
73 2pzi_A Probable serine/threoni 99.4 3.8E-13 1.3E-17 152.3 11.9 147 363-555 388-542 (681)
74 2ond_A Cleavage stimulation fa 99.4 2.8E-12 9.5E-17 130.2 17.1 180 357-555 38-249 (308)
75 2c2l_A CHIP, carboxy terminus 99.4 3.1E-13 1.1E-17 136.0 9.8 152 366-554 1-176 (281)
76 3fp2_A TPR repeat-containing p 99.4 9.4E-12 3.2E-16 134.4 21.8 163 368-545 24-275 (537)
77 2r5s_A Uncharacterized protein 99.4 1E-12 3.5E-17 122.0 11.4 142 359-541 30-172 (176)
78 4gcn_A Protein STI-1; structur 99.4 1.3E-12 4.6E-17 115.1 11.6 112 400-546 5-116 (127)
79 3upv_A Heat shock protein STI1 99.4 1.9E-12 6.7E-17 112.7 12.4 114 400-555 1-120 (126)
80 3sz7_A HSC70 cochaperone (SGT) 99.4 1.9E-12 6.6E-17 118.4 12.7 102 365-500 7-108 (164)
81 1hxi_A PEX5, peroxisome target 99.4 3.3E-12 1.1E-16 111.7 13.0 95 371-499 19-113 (121)
82 2vyi_A SGTA protein; chaperone 99.4 3.7E-12 1.3E-16 109.5 12.6 125 363-529 6-130 (131)
83 1p5q_A FKBP52, FK506-binding p 99.4 8.3E-13 2.8E-17 136.5 10.0 140 381-555 125-272 (336)
84 2vsy_A XCC0866; transferase, g 99.4 2.7E-12 9.3E-17 141.6 14.8 131 382-554 2-132 (568)
85 3ro3_A PINS homolog, G-protein 99.4 3.2E-12 1.1E-16 113.8 11.2 147 369-545 9-161 (164)
86 1qqe_A Vesicular transport pro 99.4 4.6E-12 1.6E-16 127.8 13.6 147 371-547 39-192 (292)
87 3qou_A Protein YBBN; thioredox 99.3 2.3E-12 7.8E-17 130.0 11.0 144 358-541 140-283 (287)
88 2ond_A Cleavage stimulation fa 99.3 7.2E-12 2.4E-16 127.2 14.5 173 359-547 88-275 (308)
89 4f3v_A ESX-1 secretion system 99.3 4.8E-12 1.6E-16 127.1 12.2 151 369-558 102-252 (282)
90 3sz7_A HSC70 cochaperone (SGT) 99.3 7.2E-12 2.5E-16 114.6 12.5 109 398-548 6-114 (164)
91 3q49_B STIP1 homology and U bo 99.3 1E-11 3.5E-16 109.0 13.0 103 364-500 4-106 (137)
92 3vtx_A MAMA; tetratricopeptide 99.3 3.6E-11 1.2E-15 111.4 17.3 135 401-555 3-149 (184)
93 1ouv_A Conserved hypothetical 99.3 3.2E-11 1.1E-15 119.3 17.6 154 365-544 2-181 (273)
94 3q49_B STIP1 homology and U bo 99.3 1.6E-11 5.4E-16 107.8 13.6 117 397-555 3-124 (137)
95 2gw1_A Mitochondrial precursor 99.3 9.7E-11 3.3E-15 125.3 22.2 67 484-551 202-274 (514)
96 1xnf_A Lipoprotein NLPI; TPR, 99.3 8.3E-12 2.9E-16 122.3 12.7 128 378-547 14-145 (275)
97 3gw4_A Uncharacterized protein 99.3 8.7E-12 3E-16 116.7 12.1 149 367-544 24-178 (203)
98 1wao_1 Serine/threonine protei 99.3 3.2E-13 1.1E-17 146.6 2.2 137 369-547 6-155 (477)
99 2fbn_A 70 kDa peptidylprolyl i 99.3 1.4E-11 4.8E-16 116.3 13.2 133 368-542 37-186 (198)
100 4g1t_A Interferon-induced prot 99.3 1.8E-10 6.3E-15 122.5 22.5 177 358-551 198-410 (472)
101 1na0_A Designed protein CTPR3; 99.3 6.8E-11 2.3E-15 100.6 15.5 117 369-527 9-125 (125)
102 2fbn_A 70 kDa peptidylprolyl i 99.3 5.7E-12 2E-16 119.0 9.5 147 376-557 11-166 (198)
103 3edt_B KLC 2, kinesin light ch 99.3 1.3E-11 4.5E-16 120.6 12.2 150 368-543 84-282 (283)
104 3edt_B KLC 2, kinesin light ch 99.3 1.1E-11 3.9E-16 121.1 11.4 148 366-543 40-199 (283)
105 3ulq_A Response regulator aspa 99.3 1.4E-11 4.7E-16 128.5 12.6 167 371-544 105-295 (383)
106 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 3E-12 1E-16 138.0 7.8 140 381-555 246-393 (457)
107 2dba_A Smooth muscle cell asso 99.3 5.5E-11 1.9E-15 105.1 14.6 106 360-499 19-127 (148)
108 1elw_A TPR1-domain of HOP; HOP 99.3 1.1E-10 3.7E-15 98.4 15.6 113 368-522 3-115 (118)
109 3rkv_A Putative peptidylprolyl 99.3 4.8E-11 1.7E-15 108.8 14.2 124 402-555 10-140 (162)
110 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 1.5E-11 5.2E-16 132.5 12.6 139 360-540 259-413 (457)
111 1hxi_A PEX5, peroxisome target 99.3 2.1E-11 7.1E-16 106.6 11.2 103 404-548 18-120 (121)
112 3nf1_A KLC 1, kinesin light ch 99.3 1.3E-11 4.4E-16 122.9 10.9 148 368-545 110-310 (311)
113 2ifu_A Gamma-SNAP; membrane fu 99.3 2.5E-11 8.6E-16 123.3 13.2 147 369-547 76-228 (307)
114 2if4_A ATFKBP42; FKBP-like, al 99.3 6.9E-12 2.4E-16 129.7 9.0 141 366-548 176-334 (338)
115 2qfc_A PLCR protein; TPR, HTH, 99.3 3.7E-11 1.3E-15 120.9 13.7 145 370-543 116-267 (293)
116 3ulq_A Response regulator aspa 99.3 2.4E-11 8E-16 126.7 12.4 160 368-537 142-327 (383)
117 3nf1_A KLC 1, kinesin light ch 99.3 1.7E-11 5.7E-16 122.0 10.8 148 365-542 23-182 (311)
118 2hr2_A Hypothetical protein; a 99.3 1.9E-11 6.4E-16 112.1 10.1 104 368-500 10-131 (159)
119 4a1s_A PINS, partner of inscut 99.2 3.9E-11 1.3E-15 125.2 13.4 169 370-546 87-296 (411)
120 2kck_A TPR repeat; tetratricop 99.2 4.5E-11 1.5E-15 100.0 10.9 108 399-546 2-110 (112)
121 3rkv_A Putative peptidylprolyl 99.2 8.7E-11 3E-15 107.1 13.4 103 369-509 11-131 (162)
122 4a1s_A PINS, partner of inscut 99.2 1.4E-10 4.9E-15 120.9 16.8 171 367-545 46-255 (411)
123 3q15_A PSP28, response regulat 99.2 3.4E-11 1.1E-15 125.5 11.7 167 371-545 103-293 (378)
124 3rjv_A Putative SEL1 repeat pr 99.2 1.4E-10 4.8E-15 111.3 15.1 132 366-542 15-158 (212)
125 4g1t_A Interferon-induced prot 99.2 1.5E-10 5.2E-15 123.2 16.9 176 368-555 50-255 (472)
126 1elr_A TPR2A-domain of HOP; HO 99.2 7.6E-11 2.6E-15 101.4 11.9 106 368-500 3-108 (131)
127 2xev_A YBGF; tetratricopeptide 99.2 1.2E-10 4E-15 101.0 13.2 99 370-499 3-104 (129)
128 1zu2_A Mitochondrial import re 99.2 1.3E-11 4.3E-16 113.1 7.1 110 381-555 14-133 (158)
129 3u3w_A Transcriptional activat 99.2 5E-11 1.7E-15 119.9 12.2 144 371-543 117-267 (293)
130 2kck_A TPR repeat; tetratricop 99.2 3.7E-11 1.3E-15 100.5 9.3 101 365-499 2-105 (112)
131 2dba_A Smooth muscle cell asso 99.2 1.4E-10 4.8E-15 102.4 13.6 121 396-555 21-141 (148)
132 3sf4_A G-protein-signaling mod 99.2 5.5E-11 1.9E-15 123.0 12.6 170 369-546 47-260 (406)
133 2xev_A YBGF; tetratricopeptide 99.2 1.6E-10 5.3E-15 100.2 13.5 117 403-555 2-118 (129)
134 1elw_A TPR1-domain of HOP; HOP 99.2 3E-10 1E-14 95.7 14.9 113 401-555 2-114 (118)
135 3sf4_A G-protein-signaling mod 99.2 1.3E-10 4.3E-15 120.3 15.1 171 368-546 8-220 (406)
136 2lni_A Stress-induced-phosphop 99.2 7.8E-11 2.7E-15 101.9 11.4 116 398-555 11-126 (133)
137 2qfc_A PLCR protein; TPR, HTH, 99.2 3.7E-10 1.3E-14 113.5 17.6 147 369-544 75-227 (293)
138 1ouv_A Conserved hypothetical 99.2 4.7E-10 1.6E-14 110.8 18.0 153 366-544 35-217 (273)
139 1na0_A Designed protein CTPR3; 99.2 4.5E-10 1.5E-14 95.4 15.4 116 398-555 3-119 (125)
140 2vyi_A SGTA protein; chaperone 99.2 1.7E-10 5.9E-15 98.9 12.8 118 396-555 5-122 (131)
141 2ooe_A Cleavage stimulation fa 99.2 3.2E-10 1.1E-14 123.7 17.8 180 357-555 260-471 (530)
142 2ifu_A Gamma-SNAP; membrane fu 99.2 3.7E-11 1.2E-15 122.0 9.5 145 371-546 38-188 (307)
143 3q15_A PSP28, response regulat 99.2 9.9E-11 3.4E-15 121.9 12.7 153 368-529 140-316 (378)
144 2e2e_A Formate-dependent nitri 99.2 2E-10 6.8E-15 105.9 12.4 108 359-500 34-144 (177)
145 3k9i_A BH0479 protein; putativ 99.2 6.4E-11 2.2E-15 102.1 8.4 85 381-499 2-89 (117)
146 3qky_A Outer membrane assembly 99.2 2.3E-10 7.7E-15 112.6 13.4 165 359-533 39-252 (261)
147 1ihg_A Cyclophilin 40; ppiase 99.1 1.2E-10 4.2E-15 122.0 11.7 125 369-535 223-363 (370)
148 1hh8_A P67PHOX, NCF-2, neutrop 99.1 3.2E-10 1.1E-14 107.2 13.5 104 368-499 36-149 (213)
149 3ro2_A PINS homolog, G-protein 99.1 7.5E-11 2.6E-15 117.7 9.5 148 369-546 183-336 (338)
150 1elr_A TPR2A-domain of HOP; HO 99.1 4.7E-10 1.6E-14 96.3 13.1 120 400-555 1-120 (131)
151 3ro2_A PINS homolog, G-protein 99.1 9.3E-11 3.2E-15 117.0 9.8 168 369-544 5-214 (338)
152 2c2l_A CHIP, carboxy terminus 99.1 4.9E-10 1.7E-14 112.5 14.3 105 400-546 1-105 (281)
153 3u3w_A Transcriptional activat 99.1 4.7E-10 1.6E-14 112.7 14.1 146 371-545 77-228 (293)
154 1a17_A Serine/threonine protei 99.1 2.1E-09 7.2E-14 96.7 15.1 109 402-552 12-120 (166)
155 3dra_A Protein farnesyltransfe 99.1 1.7E-09 5.8E-14 110.3 15.3 152 359-552 57-225 (306)
156 2l6j_A TPR repeat-containing p 99.1 1E-10 3.5E-15 98.4 5.1 90 368-463 3-92 (111)
157 3rjv_A Putative SEL1 repeat pr 99.1 1.9E-09 6.4E-14 103.4 14.7 134 367-544 48-199 (212)
158 1hz4_A MALT regulatory protein 99.1 1.4E-09 4.7E-14 112.4 14.6 148 369-545 14-167 (373)
159 2ooe_A Cleavage stimulation fa 99.0 8.2E-10 2.8E-14 120.5 12.8 171 359-545 310-495 (530)
160 3gw4_A Uncharacterized protein 99.0 2.1E-09 7.1E-14 100.3 13.6 136 379-543 2-137 (203)
161 1dce_A Protein (RAB geranylger 99.0 1.6E-09 5.6E-14 119.8 14.9 154 359-553 53-232 (567)
162 1ihg_A Cyclophilin 40; ppiase 99.0 4.5E-09 1.5E-13 110.1 17.0 122 403-559 223-353 (370)
163 2fo7_A Synthetic consensus TPR 99.0 2.3E-09 7.7E-14 91.9 11.7 105 361-499 27-131 (136)
164 2kat_A Uncharacterized protein 99.0 2.6E-09 8.7E-14 91.3 11.4 80 386-499 2-81 (115)
165 3mv2_B Coatomer subunit epsilo 99.0 1.9E-08 6.4E-13 102.2 19.4 184 366-566 97-304 (310)
166 2if4_A ATFKBP42; FKBP-like, al 99.0 9.9E-11 3.4E-15 121.0 2.6 126 395-555 171-306 (338)
167 1zu2_A Mitochondrial import re 99.0 7.2E-10 2.5E-14 101.4 7.4 81 357-442 24-125 (158)
168 3k9i_A BH0479 protein; putativ 98.9 1.5E-09 5.1E-14 93.4 8.0 98 415-551 2-99 (117)
169 3q7a_A Farnesyltransferase alp 98.9 8.6E-09 2.9E-13 106.6 14.9 154 382-555 67-250 (349)
170 2xm6_A Protein corresponding t 98.9 1.5E-08 5.2E-13 109.3 17.4 164 367-556 253-449 (490)
171 1na3_A Designed protein CTPR2; 98.9 5.5E-09 1.9E-13 84.3 10.6 84 368-463 8-91 (91)
172 1hz4_A MALT regulatory protein 98.9 8.9E-09 3E-13 106.3 14.5 145 370-543 54-204 (373)
173 3n71_A Histone lysine methyltr 98.9 5.7E-09 1.9E-13 113.3 12.8 149 371-549 311-471 (490)
174 3dss_A Geranylgeranyl transfer 98.9 2E-08 7E-13 103.2 16.2 150 360-551 55-231 (331)
175 3dra_A Protein farnesyltransfe 98.9 2.9E-08 9.9E-13 101.1 17.1 140 373-551 36-184 (306)
176 1wao_1 Serine/threonine protei 98.9 4.8E-09 1.6E-13 113.6 11.9 104 358-495 29-134 (477)
177 2xm6_A Protein corresponding t 98.9 3.7E-08 1.3E-12 106.3 18.3 160 365-554 35-226 (490)
178 3dss_A Geranylgeranyl transfer 98.9 3.6E-08 1.2E-12 101.3 17.1 164 360-551 99-276 (331)
179 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.6E-08 5.5E-13 97.4 13.6 112 402-549 3-132 (225)
180 3ma5_A Tetratricopeptide repea 98.9 7.1E-09 2.4E-13 86.9 8.7 68 365-432 3-70 (100)
181 3ly7_A Transcriptional activat 98.8 3.8E-08 1.3E-12 101.8 13.9 147 363-547 190-344 (372)
182 1dce_A Protein (RAB geranylger 98.8 5.6E-08 1.9E-12 107.5 15.9 138 376-553 35-184 (567)
183 2kat_A Uncharacterized protein 98.8 4.2E-08 1.4E-12 83.6 11.4 75 358-432 8-82 (115)
184 2l6j_A TPR repeat-containing p 98.8 5.9E-09 2E-13 87.4 5.7 99 402-538 3-103 (111)
185 4b4t_Q 26S proteasome regulato 98.8 3.7E-08 1.3E-12 103.3 13.1 168 369-544 4-206 (434)
186 1klx_A Cysteine rich protein B 98.8 6.6E-08 2.2E-12 86.3 12.5 119 383-553 9-135 (138)
187 2kc7_A BFR218_protein; tetratr 98.8 1.3E-08 4.4E-13 84.1 7.1 66 372-442 3-69 (99)
188 3q7a_A Farnesyltransferase alp 98.8 1.3E-07 4.4E-12 97.7 16.1 131 401-552 52-206 (349)
189 4f3v_A ESX-1 secretion system 98.7 3.9E-09 1.3E-13 105.9 4.0 145 360-545 31-205 (282)
190 3e4b_A ALGK; tetratricopeptide 98.7 5.7E-08 1.9E-12 104.2 13.1 149 368-543 175-352 (452)
191 1xi4_A Clathrin heavy chain; a 98.7 2E-07 6.9E-12 109.7 17.7 178 366-555 1102-1322(1630)
192 3ro3_A PINS homolog, G-protein 98.7 7E-08 2.4E-12 85.2 10.2 112 403-544 9-120 (164)
193 3ma5_A Tetratricopeptide repea 98.7 6.1E-08 2.1E-12 81.1 9.1 69 398-500 2-70 (100)
194 1na3_A Designed protein CTPR2; 98.6 1.9E-07 6.5E-12 75.1 10.4 85 401-527 7-91 (91)
195 3bee_A Putative YFRE protein; 98.6 1.6E-07 5.4E-12 78.2 9.4 68 365-432 2-72 (93)
196 3e4b_A ALGK; tetratricopeptide 98.6 3.1E-07 1E-11 98.5 13.5 159 359-545 203-390 (452)
197 1b89_A Protein (clathrin heavy 98.6 7.6E-08 2.6E-12 102.1 7.6 177 369-559 32-253 (449)
198 2kc7_A BFR218_protein; tetratr 98.5 1.7E-07 5.7E-12 77.3 6.5 91 406-546 3-94 (99)
199 3n71_A Histone lysine methyltr 98.4 2.3E-06 7.8E-11 92.8 13.2 110 410-549 316-434 (490)
200 3qww_A SET and MYND domain-con 98.3 2.6E-06 9E-11 90.8 11.4 107 415-551 310-425 (433)
201 3qwp_A SET and MYND domain-con 98.3 2.5E-06 8.4E-11 91.0 10.9 104 370-499 288-399 (429)
202 2v5f_A Prolyl 4-hydroxylase su 98.3 7E-06 2.4E-10 69.2 11.5 72 366-442 2-80 (104)
203 1klx_A Cysteine rich protein B 98.3 4.6E-06 1.6E-10 74.1 10.5 88 375-500 31-126 (138)
204 3qwp_A SET and MYND domain-con 98.2 3.4E-06 1.2E-10 89.9 11.0 112 413-554 297-417 (429)
205 4e6h_A MRNA 3'-END-processing 98.2 2.6E-05 8.8E-10 87.8 18.7 194 358-559 332-553 (679)
206 3qww_A SET and MYND domain-con 98.2 4.5E-06 1.5E-10 89.0 11.4 101 373-499 302-410 (433)
207 4b4t_Q 26S proteasome regulato 98.2 4.4E-06 1.5E-10 87.4 10.4 143 371-542 97-245 (434)
208 3bee_A Putative YFRE protein; 98.2 1.9E-05 6.5E-10 65.4 12.2 68 399-500 2-72 (93)
209 3mv2_B Coatomer subunit epsilo 98.1 2.7E-05 9.3E-10 78.9 14.1 147 388-553 85-261 (310)
210 3u64_A Protein TP_0956; tetrat 98.1 5.1E-06 1.7E-10 82.8 8.4 101 365-499 148-268 (301)
211 1xi4_A Clathrin heavy chain; a 98.1 2.5E-05 8.5E-10 92.3 14.9 147 365-544 1191-1347(1630)
212 2v5f_A Prolyl 4-hydroxylase su 98.0 1.5E-05 5.1E-10 67.1 8.1 81 452-555 8-88 (104)
213 1b89_A Protein (clathrin heavy 97.9 1E-05 3.4E-10 85.8 6.3 106 370-500 123-236 (449)
214 1pc2_A Mitochondria fission pr 97.9 1.8E-05 6.2E-10 71.5 7.1 80 358-442 21-105 (152)
215 1pc2_A Mitochondria fission pr 97.9 5.4E-05 1.8E-09 68.4 10.0 88 385-508 14-104 (152)
216 4e6h_A MRNA 3'-END-processing 97.8 5.8E-05 2E-09 84.9 10.6 174 359-548 368-576 (679)
217 3ly7_A Transcriptional activat 97.8 5.6E-05 1.9E-09 78.2 9.4 106 360-500 224-339 (372)
218 3u64_A Protein TP_0956; tetrat 97.7 3.4E-05 1.2E-09 76.9 6.1 74 359-432 187-269 (301)
219 4h7y_A Dual specificity protei 97.6 0.0006 2E-08 60.9 12.0 120 397-552 7-133 (161)
220 1nzn_A CGI-135 protein, fissio 97.2 0.0021 7.1E-08 56.0 9.7 100 418-555 16-116 (126)
221 3ffl_A Anaphase-promoting comp 97.0 0.002 6.7E-08 58.7 8.8 64 369-432 20-92 (167)
222 2uy1_A Cleavage stimulation fa 97.0 0.0041 1.4E-07 67.2 12.9 54 358-412 202-255 (493)
223 4g26_A Pentatricopeptide repea 96.7 0.037 1.3E-06 59.7 16.9 121 385-545 86-209 (501)
224 1nzn_A CGI-135 protein, fissio 96.6 0.01 3.5E-07 51.6 9.5 91 383-509 15-108 (126)
225 3o48_A Mitochondria fission 1 96.6 0.0097 3.3E-07 52.0 9.2 63 486-555 58-120 (134)
226 1y8m_A FIS1; mitochondria, unk 96.5 0.013 4.4E-07 51.9 9.6 79 451-555 41-119 (144)
227 1zbp_A Hypothetical protein VP 96.4 0.027 9.4E-07 55.2 12.5 56 377-432 5-60 (273)
228 3mkq_B Coatomer subunit alpha; 96.4 0.055 1.9E-06 49.8 13.9 56 367-430 6-61 (177)
229 2uy1_A Cleavage stimulation fa 96.3 0.082 2.8E-06 56.9 17.0 140 387-550 197-357 (493)
230 3ffl_A Anaphase-promoting comp 95.9 0.035 1.2E-06 50.4 9.4 110 404-538 21-147 (167)
231 4g26_A Pentatricopeptide repea 95.8 0.13 4.5E-06 55.4 15.3 136 369-545 25-174 (501)
232 4h7y_A Dual specificity protei 95.3 0.16 5.3E-06 45.4 11.1 105 361-500 5-123 (161)
233 1y8m_A FIS1; mitochondria, unk 95.0 0.12 4.1E-06 45.6 9.3 73 365-442 35-111 (144)
234 3mkq_A Coatomer beta'-subunit; 94.9 0.18 6.1E-06 56.7 13.4 47 379-430 662-708 (814)
235 3o48_A Mitochondria fission 1 94.8 0.093 3.2E-06 45.8 8.1 74 364-442 35-112 (134)
236 3kae_A CDC27, possible protein 94.2 0.46 1.6E-05 43.2 11.3 125 379-548 12-149 (242)
237 1ya0_A SMG-7 transcript varian 93.4 0.15 5.1E-06 54.9 8.0 61 371-431 154-214 (497)
238 2ff4_A Probable regulatory pro 93.4 0.6 2E-05 48.4 12.5 46 486-539 186-231 (388)
239 4gns_B Protein CSD3, chitin bi 92.4 0.24 8.1E-06 55.9 8.1 61 369-429 337-397 (754)
240 2ff4_A Probable regulatory pro 92.2 0.31 1E-05 50.7 8.3 63 370-432 172-234 (388)
241 4b4t_S RPN3, 26S proteasome re 91.9 0.27 9.2E-06 52.8 7.4 153 373-546 140-303 (523)
242 4b4t_R RPN7, 26S proteasome re 90.9 2.6 8.7E-05 44.2 13.8 65 368-432 130-197 (429)
243 4b4t_R RPN7, 26S proteasome re 90.3 0.41 1.4E-05 50.4 7.0 110 400-543 128-238 (429)
244 1zbp_A Hypothetical protein VP 89.4 0.83 2.8E-05 44.7 7.7 68 480-555 6-73 (273)
245 3txn_A 26S proteasome regulato 89.3 4.3 0.00015 42.1 13.5 105 407-542 103-210 (394)
246 3mkq_A Coatomer beta'-subunit; 89.0 2.2 7.5E-05 47.6 12.1 56 367-430 679-734 (814)
247 4b4t_P 26S proteasome regulato 87.9 4.1 0.00014 42.9 12.6 106 406-542 140-247 (445)
248 1ya0_A SMG-7 transcript varian 87.2 3.4 0.00011 44.3 11.5 47 405-463 154-200 (497)
249 4b4t_P 26S proteasome regulato 87.1 5.2 0.00018 42.1 12.8 91 368-463 136-232 (445)
250 3txn_A 26S proteasome regulato 86.4 3.7 0.00013 42.6 10.9 60 373-432 103-168 (394)
251 4fhn_B Nucleoporin NUP120; pro 86.2 2.9 9.8E-05 49.6 11.3 146 374-538 817-963 (1139)
252 4gns_B Protein CSD3, chitin bi 84.8 5 0.00017 45.2 11.7 130 382-539 261-397 (754)
253 3spa_A Mtrpol, DNA-directed RN 82.9 17 0.00058 42.3 15.0 104 403-543 127-231 (1134)
254 4b4t_S RPN3, 26S proteasome re 81.8 5.4 0.00018 42.7 9.9 110 361-499 173-298 (523)
255 3spa_A Mtrpol, DNA-directed RN 81.4 17 0.00058 42.3 14.2 96 370-499 128-229 (1134)
256 3kae_A CDC27, possible protein 80.3 34 0.0012 31.1 16.8 64 368-431 61-142 (242)
257 1qsa_A Protein (soluble lytic 79.8 16 0.00055 40.1 13.2 128 380-542 263-410 (618)
258 3ax2_A Mitochondrial import re 77.7 2.1 7.2E-05 33.1 3.8 45 511-555 15-59 (73)
259 1qsa_A Protein (soluble lytic 75.4 20 0.00068 39.3 12.4 129 371-542 216-348 (618)
260 4gq2_M Nucleoporin NUP120; bet 74.3 14 0.00048 42.8 11.4 55 373-431 814-868 (950)
261 1om2_A Protein (mitochondrial 72.5 3.8 0.00013 33.3 4.2 53 503-555 10-62 (95)
262 1wy6_A Hypothetical protein ST 72.0 11 0.00038 33.1 7.2 61 371-431 92-153 (172)
263 4fhn_B Nucleoporin NUP120; pro 68.6 29 0.001 40.9 12.6 91 366-463 839-952 (1139)
264 3mkq_B Coatomer subunit alpha; 63.8 75 0.0026 28.7 11.5 106 401-539 6-115 (177)
265 2ijq_A Hypothetical protein; s 61.4 28 0.00097 31.1 8.1 67 367-433 30-105 (161)
266 1wy6_A Hypothetical protein ST 57.1 33 0.0011 30.1 7.3 143 373-542 11-154 (172)
267 2wpv_A GET4, UPF0363 protein Y 55.1 1E+02 0.0036 30.5 11.9 24 514-537 135-158 (312)
268 2cfu_A SDSA1; SDS-hydrolase, l 52.2 15 0.0005 40.8 5.6 53 368-420 448-500 (658)
269 3lpz_A GET4 (YOR164C homolog); 51.7 2E+02 0.0067 28.8 14.6 24 514-537 137-160 (336)
270 3lpz_A GET4 (YOR164C homolog); 46.9 1.1E+02 0.0039 30.5 10.7 34 522-555 253-290 (336)
271 2v6y_A AAA family ATPase, P60 44.6 23 0.00077 27.9 4.1 22 411-432 19-40 (83)
272 3ax2_A Mitochondrial import re 43.7 35 0.0012 26.2 4.9 32 373-404 21-52 (73)
273 2crb_A Nuclear receptor bindin 42.8 34 0.0012 27.5 4.8 30 403-432 15-44 (97)
274 3lxu_X Tripeptidyl-peptidase 2 40.9 4E+02 0.014 31.8 15.4 36 379-414 1117-1152(1354)
275 4a5x_A MITD1, MIT domain-conta 40.0 32 0.0011 27.2 4.4 22 411-432 24-45 (86)
276 4a5x_A MITD1, MIT domain-conta 40.0 11 0.00039 29.9 1.7 31 367-397 14-44 (86)
277 2w2u_A Hypothetical P60 katani 38.0 27 0.00092 27.5 3.5 21 413-433 29-49 (83)
278 1om2_A Protein (mitochondrial 37.3 35 0.0012 27.6 4.1 29 373-401 24-52 (95)
279 2v6y_A AAA family ATPase, P60 36.4 29 0.001 27.2 3.5 25 372-396 14-38 (83)
280 2crb_A Nuclear receptor bindin 36.2 34 0.0012 27.5 3.8 25 517-541 19-43 (97)
281 2ijq_A Hypothetical protein; s 35.9 1.5E+02 0.0052 26.3 8.5 55 486-542 47-104 (161)
282 2rpa_A Katanin P60 ATPase-cont 34.9 29 0.00098 27.1 3.2 26 408-433 17-42 (78)
283 2cwy_A Hypothetical protein TT 34.2 62 0.0021 26.0 5.2 59 373-433 5-69 (94)
284 2yhe_A SEC-alkyl sulfatase; hy 39.2 9.1 0.00031 42.5 0.0 55 369-423 461-515 (668)
285 1z65_A PRPLP, prion-like prote 31.5 32 0.0011 21.3 2.3 17 118-135 5-21 (30)
286 3t5x_A PCI domain-containing p 31.2 59 0.002 30.0 5.3 37 369-405 14-50 (203)
287 2rpa_A Katanin P60 ATPase-cont 30.6 44 0.0015 26.0 3.6 28 370-397 13-40 (78)
288 2v6x_A Vacuolar protein sortin 27.7 49 0.0017 25.8 3.5 20 413-432 23-42 (85)
289 3mv2_A Coatomer subunit alpha; 27.6 4.6E+02 0.016 25.9 13.9 33 515-547 209-241 (325)
290 4ady_A RPN2, 26S proteasome re 27.1 3.2E+02 0.011 31.4 11.3 60 371-431 457-518 (963)
291 2w2u_A Hypothetical P60 katani 26.9 71 0.0024 25.0 4.3 32 487-541 16-47 (83)
292 3mkr_B Coatomer subunit alpha; 26.7 4.7E+02 0.016 25.8 15.1 32 515-546 200-231 (320)
293 1wfd_A Hypothetical protein 15 26.6 52 0.0018 26.3 3.5 19 414-432 26-44 (93)
294 3t5x_A PCI domain-containing p 25.7 1.9E+02 0.0066 26.4 7.9 30 403-432 14-43 (203)
295 3re2_A Predicted protein; meni 25.6 2.4E+02 0.0083 28.6 8.7 64 369-432 255-325 (472)
296 3re2_A Predicted protein; meni 25.0 1.9E+02 0.0066 29.3 7.9 69 401-498 253-323 (472)
297 4b4t_O 26S proteasome regulato 24.7 5.4E+02 0.019 25.8 12.0 54 379-432 86-156 (393)
298 2cpt_A SKD1 protein, vacuolar 23.7 53 0.0018 27.6 3.2 19 414-432 29-47 (117)
299 3t5v_B Nuclear mRNA export pro 23.3 1.5E+02 0.0052 30.9 7.3 59 374-432 181-249 (455)
300 4gq2_M Nucleoporin NUP120; bet 22.5 2E+02 0.0067 33.1 8.7 66 367-432 838-926 (950)
301 3myv_A SUSD superfamily protei 22.3 1.4E+02 0.0048 30.9 6.9 29 514-542 191-219 (454)
302 4gq4_A Menin; tumor suppressor 22.2 3.3E+02 0.011 28.2 9.0 65 369-433 262-333 (489)
303 3u84_A Menin; MLL, JUND, ledgf 22.0 2.3E+02 0.0078 29.3 7.8 87 401-542 275-367 (550)
304 2npm_A 14-3-3 domain containin 21.8 5.3E+02 0.018 24.6 15.5 45 369-413 28-76 (260)
305 3mcx_A SUSD superfamily protei 21.8 1.7E+02 0.0057 30.5 7.4 30 514-543 203-232 (477)
306 2cwy_A Hypothetical protein TT 21.3 2.3E+02 0.0077 22.6 6.4 50 486-541 16-67 (94)
No 1
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.76 E-value=1.6e-17 Score=154.75 Aligned_cols=160 Identities=21% Similarity=0.214 Sum_probs=134.6
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~ 447 (572)
++..|+.+|..+..+|++++|+.+|+++++.+|+++.+++.+|.+|...|++++|+..+++++.. .|++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-----~~~~~----- 73 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-----DTTSA----- 73 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCCH-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CchhH-----
Confidence 57889999999999999999999999999999999999999999999999999999999999985 55543
Q ss_pred HHHHHHHHHHHHHHhhchhh-----HHHHHhh-------hhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHH
Q 008246 448 LIVASQWSGVACIRQAAHNF-----FELVQQG-------QLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG 515 (572)
Q Consensus 448 ~~~a~~~lG~~~~~~g~~~~-----~~a~~~~-------~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~a 515 (572)
.++..+|..+...++.+. .++.... ...+.++...|++++|++.|+++++ .+|.+. .+
T Consensus 74 --~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~----~~p~~~----~~ 143 (184)
T 3vtx_A 74 --EAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS----IKPGFI----RA 143 (184)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCH----HH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH----hcchhh----hH
Confidence 356777888888875442 2222222 2245678899999999999999999 455543 56
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008246 516 LVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 516 l~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~ 547 (572)
+..+|.+|..+|++++|+++|+++++++|++.
T Consensus 144 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 144 YQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 77899999999999999999999999999764
No 2
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.76 E-value=1.2e-17 Score=161.57 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=137.0
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHH
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK-----------GLLEEAVEYLE 427 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~-----------g~~~eA~~~~~ 427 (572)
.+++..+|.+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++... |++++|+.+|+
T Consensus 29 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 108 (217)
T 2pl2_A 29 ERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLK 108 (217)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHH
Confidence 5788899999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCc
Q 008246 428 CAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPK 507 (572)
Q Consensus 428 rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~ 507 (572)
+|+++ +|++. .++..+|.++...| ++++|++.|++++++ + .
T Consensus 109 ~al~~-----~P~~~-------~~~~~lg~~~~~~g----------------------~~~~A~~~~~~al~~----~-~ 149 (217)
T 2pl2_A 109 DAERV-----NPRYA-------PLHLQRGLVYALLG----------------------ERDKAEASLKQALAL----E-D 149 (217)
T ss_dssp HHHHH-----CTTCH-------HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHH----C-C
T ss_pred HHHHh-----CcccH-------HHHHHHHHHHHHcC----------------------ChHHHHHHHHHHHhc----c-c
Confidence 99986 66653 46788899999999 999999999999995 2 2
Q ss_pred hhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 508 SKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 508 ~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
+ ..++..+|.++...|++++|++.|+++++.+|++...+..+..
T Consensus 150 ~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~ 193 (217)
T 2pl2_A 150 T----PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYAS 193 (217)
T ss_dssp C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred c----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 2 2567789999999999999999999999999999887665544
No 3
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.74 E-value=1.7e-17 Score=188.79 Aligned_cols=148 Identities=22% Similarity=0.149 Sum_probs=131.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
.|.+++++..+|..+.++|++++|+++|++|++++|+++.+|++||.+|.++|++++|+++|++|+++ +|++.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-----~P~~~-- 77 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-----SPTFA-- 77 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH--
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH--
Confidence 35578999999999999999999999999999999999999999999999999999999999999996 66654
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHH
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 524 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~ 524 (572)
.+++++|.++.++| ++++|++.|+++++ .+|++. +++.++|.+|.
T Consensus 78 -----~a~~nLg~~l~~~g----------------------~~~~A~~~~~kAl~----l~P~~~----~a~~~Lg~~~~ 122 (723)
T 4gyw_A 78 -----DAYSNMGNTLKEMQ----------------------DVQGALQCYTRAIQ----INPAFA----DAHSNLASIHK 122 (723)
T ss_dssp -----HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHH----hCCCCH----HHHHHHHHHHH
Confidence 47899999999999 99999999999999 456543 57778999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHhcc
Q 008246 525 NVGRNAEAEKYLRLAAAHNPQYNELLEQLE 554 (572)
Q Consensus 525 ~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~ 554 (572)
++|++++|+++|+++++++|++.+.+.++.
T Consensus 123 ~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~ 152 (723)
T 4gyw_A 123 DSGNIPEAIASYRTALKLKPDFPDAYCNLA 152 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHhhhh
Confidence 999999999999999999999887655443
No 4
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=1.8e-16 Score=153.25 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=129.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008246 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~ 445 (572)
|.+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++++ +|++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~--- 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-----TPRYL--- 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcH---
Confidence 4567889999999999999999999999999999999999999999999999999999999999986 67654
Q ss_pred hHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHH
Q 008246 446 DLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN 525 (572)
Q Consensus 446 ~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~ 525 (572)
.++..+|.++...+... .......|++++|+..|+++++ .+|++. .++..+|.++..
T Consensus 74 ----~a~~~lg~~~~~~~~~~-----------~~~~~~~g~~~~A~~~~~~al~----~~P~~~----~~~~~lg~~~~~ 130 (217)
T 2pl2_A 74 ----GGYMVLSEAYVALYRQA-----------EDRERGKGYLEQALSVLKDAER----VNPRYA----PLHLQRGLVYAL 130 (217)
T ss_dssp ----HHHHHHHHHHHHHHHTC-----------SSHHHHHHHHHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhhhhh-----------hhhcccccCHHHHHHHHHHHHH----hCcccH----HHHHHHHHHHHH
Confidence 46788999999881000 0001111299999999999999 456543 567789999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHhcc
Q 008246 526 VGRNAEAEKYLRLAAAHNPQYNELLEQLE 554 (572)
Q Consensus 526 ~g~~eeA~~~l~~aL~l~P~~~~~l~~l~ 554 (572)
.|++++|+++|+++++++ ++...+..+.
T Consensus 131 ~g~~~~A~~~~~~al~~~-~~~~~~~~la 158 (217)
T 2pl2_A 131 LGERDKAEASLKQALALE-DTPEIRSALA 158 (217)
T ss_dssp TTCHHHHHHHHHHHHHHC-CCHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcc-cchHHHHHHH
Confidence 999999999999999999 8776555443
No 5
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.70 E-value=3.3e-16 Score=151.23 Aligned_cols=162 Identities=16% Similarity=0.120 Sum_probs=138.4
Q ss_pred hhccccCC-CCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008246 359 QLKISVEN-LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAG 437 (572)
Q Consensus 359 ~~ai~~~~-~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~ 437 (572)
..++..+| .+...++.+|..+...|++++|+.+|+++++.+|+++.+++.+|.+|...|++++|+++|++++++
T Consensus 31 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----- 105 (228)
T 4i17_A 31 SEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA----- 105 (228)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----
Confidence 45666666 678889999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCc--hhhhhhHH
Q 008246 438 HPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPK--SKAHYYDG 515 (572)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~--~~~~~~~a 515 (572)
+|+++........++..+|.++...| ++++|++.|+++++ .+|. + ..+
T Consensus 106 ~p~~~~~~~~~~~~~~~~g~~~~~~~----------------------~~~~A~~~~~~al~----~~p~~~~----~~~ 155 (228)
T 4i17_A 106 VPGNATIEKLYAIYYLKEGQKFQQAG----------------------NIEKAEENYKHATD----VTSKKWK----TDA 155 (228)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHTT----SSCHHHH----HHH
T ss_pred CCCcHHHHHHHHHHHHHHhHHHHHhc----------------------cHHHHHHHHHHHHh----cCCCccc----HHH
Confidence 77765333333456777888888888 99999999999999 5665 3 356
Q ss_pred HHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 516 LVVLASALCNVGRN---------------------------AEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 516 l~~Lg~~l~~~g~~---------------------------eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
+..+|.++...|+. ++|+.+|+++++++|++.+.+..+.+
T Consensus 156 ~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 156 LYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 77899999999998 99999999999999999988777655
No 6
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=1.6e-16 Score=167.72 Aligned_cols=177 Identities=12% Similarity=0.119 Sum_probs=146.7
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhhcC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGL-LEEAVEYLECAISKLFLAG 437 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~-~~eA~~~~~rAl~~l~~~~ 437 (572)
..+|..+|.+++++..+|..+...|++++|+..|+++++++|++..+|+.+|.++...|+ +++|+.+|++|+++
T Consensus 87 ~~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----- 161 (382)
T 2h6f_A 87 VVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----- 161 (382)
T ss_dssp SSEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----
T ss_pred chhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-----
Confidence 457888888899999999999999999999999999999999999999999999999997 99999999999986
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHhhchh-----hHHHHHhhhh-------hHhhhhhhccHHHHHHHHHHHhcCCCCCC
Q 008246 438 HPTEPEAIDLLIVASQWSGVACIRQAAHN-----FFELVQQGQL-------KLLSFVSQEKWEEGIAHLERIGNLKEPEE 505 (572)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~~~~~~g~~~-----~~~a~~~~~~-------~~~~~~~~g~~~eAi~~l~kal~l~~p~d 505 (572)
+|++. .+|+++|.++..+|+.+ +.+++..+.. ++.++...|++++|++.|+++++ .+
T Consensus 162 ~P~~~-------~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~----l~ 230 (382)
T 2h6f_A 162 QPKNY-------QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK----ED 230 (382)
T ss_dssp CTTCH-------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH----HC
T ss_pred CCCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----hC
Confidence 67664 47899999999999554 2334443332 34456778899999999999998 46
Q ss_pred CchhhhhhHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHhCCCCHHHHHhccc
Q 008246 506 PKSKAHYYDGLVVLASALCN-VGRNAEA-----EKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 506 p~~~~~~~~al~~Lg~~l~~-~g~~eeA-----~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
|.+. .++.++|.++.. .|+.++| +++|+++++++|++...+..+..
T Consensus 231 P~~~----~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ 282 (382)
T 2h6f_A 231 VRNN----SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG 282 (382)
T ss_dssp TTCH----HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred CCCH----HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 6543 567779999998 5555777 58899999999999988888885
No 7
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.68 E-value=1.8e-17 Score=150.99 Aligned_cols=139 Identities=19% Similarity=0.190 Sum_probs=119.6
Q ss_pred HHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHH
Q 008246 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQW 454 (572)
Q Consensus 375 lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~ 454 (572)
+|..+..+|++++|+..+++++..+|+++.+++.+|.+|...|++++|+++|++|+++ +|+++ .++..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-----~p~~~-------~a~~~ 70 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV-----QERDP-------KAHRF 70 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHHH
Confidence 5777888999999999999999999999999999999999999999999999999996 77664 47889
Q ss_pred HHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHH
Q 008246 455 SGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEK 534 (572)
Q Consensus 455 lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~ 534 (572)
+|.++...| ++++|+..|+++++ .+|++. +++..+|.+|.+.|++++|.+
T Consensus 71 lg~~~~~~~----------------------~~~~A~~~~~~al~----~~p~~~----~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 71 LGLLYELEE----------------------NTDKAVECYRRSVE----LNPTQK----DLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HHHHHHHTT----------------------CHHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHHHCSSSSHHH
T ss_pred HHHHHHHcC----------------------chHHHHHHHHHHHH----hCCCCH----HHHHHHHHHHHHcCChHHHHH
Confidence 999999999 99999999999999 456543 567789999999999988766
Q ss_pred H-HHHHHHhCCCCHHHHHhccc
Q 008246 535 Y-LRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 535 ~-l~~aL~l~P~~~~~l~~l~~ 555 (572)
. ++++++++|++.......++
T Consensus 121 ~~~~~al~l~P~~~~~~~l~~~ 142 (150)
T 4ga2_A 121 YWVERAAKLFPGSPAVYKLKEQ 142 (150)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcCCHHHHHHHHH
Confidence 5 69999999999887655444
No 8
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.67 E-value=9.4e-16 Score=147.99 Aligned_cols=155 Identities=16% Similarity=0.054 Sum_probs=132.3
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEP-DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP-~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
+.+++.++..|..+...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+++|++|++. +|++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~--- 75 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-----NYNL--- 75 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCSH---
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-----Ccch---
Confidence 45789999999999999999999999999999999 99999999999999999999999999999985 4443
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHH
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 524 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~ 524 (572)
..++..+|.++..+| ++++|++.|++++++ .|.++........++..+|.++.
T Consensus 76 ----~~~~~~l~~~~~~~~----------------------~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~ 128 (228)
T 4i17_A 76 ----ANAYIGKSAAYRDMK----------------------NNQEYIATLTEGIKA-VPGNATIEKLYAIYYLKEGQKFQ 128 (228)
T ss_dssp ----HHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcc----------------------cHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHhHHHH
Confidence 356888999999999 999999999999993 23333222223356788999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CHHHHHhccc
Q 008246 525 NVGRNAEAEKYLRLAAAHNPQ--YNELLEQLEN 555 (572)
Q Consensus 525 ~~g~~eeA~~~l~~aL~l~P~--~~~~l~~l~~ 555 (572)
..|++++|+++|+++++++|+ +...+..+..
T Consensus 129 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 129 QAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999999 7665554443
No 9
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.66 E-value=3.2e-16 Score=178.20 Aligned_cols=146 Identities=16% Similarity=0.080 Sum_probs=134.5
Q ss_pred hhhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008246 358 KQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAG 437 (572)
Q Consensus 358 ~~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~ 437 (572)
++++++.+|.++++++.+|..+.+.|++++|+++|++|++++|+++++|+++|.+|..+|++++|+++|++|+++
T Consensus 32 ~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l----- 106 (723)
T 4gyw_A 32 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI----- 106 (723)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHH
Q 008246 438 HPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLV 517 (572)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~ 517 (572)
+|++. .++.++|.++.++| ++++|++.|+++++ .+|++. +++.
T Consensus 107 ~P~~~-------~a~~~Lg~~~~~~g----------------------~~~eAi~~~~~Al~----l~P~~~----~a~~ 149 (723)
T 4gyw_A 107 NPAFA-------DAHSNLASIHKDSG----------------------NIPEAIASYRTALK----LKPDFP----DAYC 149 (723)
T ss_dssp CTTCH-------HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH----HCSCCH----HHHH
T ss_pred CCCCH-------HHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHH----hCCCCh----HHHh
Confidence 66653 47889999999999 99999999999999 456543 5778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008246 518 VLASALCNVGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 518 ~Lg~~l~~~g~~eeA~~~l~~aL~l~P~ 545 (572)
++|.+|..+|++++|++.|++++++.|+
T Consensus 150 ~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 150 NLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred hhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 8999999999999999999999998765
No 10
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.65 E-value=5e-15 Score=146.23 Aligned_cols=173 Identities=14% Similarity=0.111 Sum_probs=140.0
Q ss_pred cccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 362 ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 362 i~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~---~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
...++.+++.++.+|..+...|++++|+..|+++++.+|++ +.+++.+|.+|...|++++|+.+|+++++. +
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~ 82 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI-----Y 82 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-----C
Confidence 45567789999999999999999999999999999999999 999999999999999999999999999986 6
Q ss_pred CCChhhhhHHHHHHHHHHHHHHH--------hhchhh-----HHHHHhh------------------------hhhHhhh
Q 008246 439 PTEPEAIDLLIVASQWSGVACIR--------QAAHNF-----FELVQQG------------------------QLKLLSF 481 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~--------~g~~~~-----~~a~~~~------------------------~~~~~~~ 481 (572)
|+++. ...+++.+|.++.. .|+.+. .+++... -..+.++
T Consensus 83 p~~~~----~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 158 (261)
T 3qky_A 83 QIDPR----VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLY 158 (261)
T ss_dssp TTCTT----HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCch----hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76541 23578999999998 774331 1122211 1235678
Q ss_pred hhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHH
Q 008246 482 VSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV----------GRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 482 ~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~----------g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
...|++++|+..|+++++ .+|++. ...+++..+|.+|..+ |++++|+++|+++++.+|++..
T Consensus 159 ~~~g~~~~A~~~~~~~l~----~~p~~~-~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFD----AYPDTP-WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHTTCHHHHHHHHHHHHH----HCTTST-THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHccCHHHHHHHHHHHHH----HCCCCc-hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 889999999999999999 344322 1336778899999977 9999999999999999999854
No 11
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.65 E-value=1.3e-15 Score=146.22 Aligned_cols=142 Identities=10% Similarity=0.069 Sum_probs=116.2
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALIL----------------MGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~----------------LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
+++.++..|..+...|++++|+.+|+++++.+|+++.+|+. +|.+|...|++++|+.+|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999 99999999999999999999998
Q ss_pred hhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhh
Q 008246 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAH 511 (572)
Q Consensus 432 ~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~ 511 (572)
+ +|++. .++..+|.++...| ++++|++.|+++++ .+|++...
T Consensus 83 ~-----~p~~~-------~~~~~lg~~~~~~g----------------------~~~~A~~~~~~al~----~~P~~~~a 124 (208)
T 3urz_A 83 K-----APNNV-------DCLEACAEMQVCRG----------------------QEKDALRMYEKILQ----LEADNLAA 124 (208)
T ss_dssp H-----CTTCH-------HHHHHHHHHHHHHT----------------------CHHHHHHHHHHHHH----HCTTCHHH
T ss_pred H-----CCCCH-------HHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHH----cCCCCHHH
Confidence 6 67664 46788999999999 55555555555555 22322211
Q ss_pred h-------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008246 512 Y-------------------------------YDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 512 ~-------------------------------~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~ 547 (572)
+ ..++..+|.++...|++++|+.+|+++++++|+..
T Consensus 125 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 125 NIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 1 01345577788888999999999999999999853
No 12
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=9.1e-16 Score=161.97 Aligned_cols=180 Identities=9% Similarity=-0.008 Sum_probs=141.9
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCC-cccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGD-KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAG 437 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~-~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~ 437 (572)
.+++..+|.+..+++.+|..+...|+ +++|+.+|+++++++|+++.+|+.+|.++...|++++|+.+|++|+++
T Consensus 121 ~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l----- 195 (382)
T 2h6f_A 121 RDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ----- 195 (382)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-----
T ss_pred HHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Confidence 56888999999999999999999997 999999999999999999999999999999999999999999999986
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHhhchh-----hHHHHHhhhh-------hHhhhhh-hccHHHH-----HHHHHHHhc
Q 008246 438 HPTEPEAIDLLIVASQWSGVACIRQAAHN-----FFELVQQGQL-------KLLSFVS-QEKWEEG-----IAHLERIGN 499 (572)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~~~~~~g~~~-----~~~a~~~~~~-------~~~~~~~-~g~~~eA-----i~~l~kal~ 499 (572)
+|++. .+|+++|.++...|+.+ +.++++.+.. ++.++.. .|.+++| +++|+++++
T Consensus 196 dP~~~-------~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~ 268 (382)
T 2h6f_A 196 DAKNY-------HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268 (382)
T ss_dssp CTTCH-------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH
T ss_pred CccCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 66653 57889999999999655 2334444432 2344555 4554777 599999999
Q ss_pred CCCCCCCchhhhhhHHHHHHHHHHHHcCCH-HHHH-HHHHHHHHhCCCCHHHHHhccccchH
Q 008246 500 LKEPEEPKSKAHYYDGLVVLASALCNVGRN-AEAE-KYLRLAAAHNPQYNELLEQLENNDEE 559 (572)
Q Consensus 500 l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~-eeA~-~~l~~aL~l~P~~~~~l~~l~~~~~~ 559 (572)
.+|++. .++.++|.++...|.- .+.. +.++++ +.+|++...+..+.....+
T Consensus 269 ----l~P~~~----~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 269 ----LVPHNE----SAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYED 321 (382)
T ss_dssp ----HSTTCH----HHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHH
T ss_pred ----HCCCCH----HHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence 999765 5677899999998862 3332 334444 7789998877766654433
No 13
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.64 E-value=1.6e-15 Score=134.03 Aligned_cols=120 Identities=14% Similarity=0.154 Sum_probs=84.3
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHh
Q 008246 394 LALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQ 473 (572)
Q Consensus 394 ~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~ 473 (572)
++..+||+.++++..+|..|++.|++++|+++|++|+++ +|.+. .++.++|.++.++|
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~~~~~~~~~~---------- 61 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-----DPENA-------ILYSNRAACLTKLM---------- 61 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTT----------
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHHHHhhHHHhhc----------
Confidence 344567777777777777777777777777777777765 55543 35667777777777
Q ss_pred hhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 008246 474 GQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 553 (572)
Q Consensus 474 ~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l 553 (572)
++++|++.|+++++ .+|.+. .++..+|.++..+|++++|+++|+++++++|++.++...+
T Consensus 62 ------------~~~~A~~~~~~al~----~~p~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 62 ------------EFQRALDDCDTCIR----LDSKFI----KGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp ------------CHHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ------------cHHHHHHHHHHHHH----hhhhhh----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 77777777777777 344432 4566678888888888888888888888888877776665
Q ss_pred cc
Q 008246 554 EN 555 (572)
Q Consensus 554 ~~ 555 (572)
.+
T Consensus 122 ~~ 123 (126)
T 4gco_A 122 RN 123 (126)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 14
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.62 E-value=1.4e-14 Score=150.81 Aligned_cols=177 Identities=16% Similarity=0.086 Sum_probs=147.9
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
.+++..+|.+++.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+++|+++++. +
T Consensus 193 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~ 267 (388)
T 1w3b_A 193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-----Q 267 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----C
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----C
Confidence 45777788889999999999999999999999999999999999999999999999999999999999999985 6
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhh-----HHHHHhhh-------hhHhhhhhhccHHHHHHHHHHHhcCCCCCCC
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNF-----FELVQQGQ-------LKLLSFVSQEKWEEGIAHLERIGNLKEPEEP 506 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~~~-------~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp 506 (572)
|+++ .++..+|.++.+.|+.+. .++.+..+ ..+.++...|++++|++.|+++++ .+|
T Consensus 268 p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p 336 (388)
T 1w3b_A 268 PHFP-------DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE----VFP 336 (388)
T ss_dssp SSCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT----SCT
T ss_pred CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCC
Confidence 6553 357888999999995442 22222221 234567889999999999999999 455
Q ss_pred chhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 507 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 507 ~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
.+. .++..+|.++.+.|++++|+++|+++++++|++...+..+..
T Consensus 337 ~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~ 381 (388)
T 1w3b_A 337 EFA----AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381 (388)
T ss_dssp TCH----HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred CcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHH
Confidence 433 566789999999999999999999999999999988777665
No 15
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.61 E-value=4.4e-15 Score=131.27 Aligned_cols=121 Identities=11% Similarity=0.104 Sum_probs=105.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008246 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (572)
Q Consensus 361 ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~ 440 (572)
...++|..++.+.++|..++++|++++|+..|+++++.+|+++.+|+.+|.+|...|++++|++.|++|+++ +|+
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~ 79 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL-----DSK 79 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----hhh
Confidence 345677788999999999999999999999999999999999999999999999999999999999999986 666
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHH
Q 008246 441 EPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA 520 (572)
Q Consensus 441 ~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg 520 (572)
+. .+++++|.++..+| ++++|++.|+++++ .+|++. +++..++
T Consensus 80 ~~-------~a~~~lg~~~~~~~----------------------~~~~A~~~~~~al~----l~P~~~----~a~~~l~ 122 (126)
T 4gco_A 80 FI-------KGYIRKAACLVAMR----------------------EWSKAQRAYEDALQ----VDPSNE----EAREGVR 122 (126)
T ss_dssp CH-------HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH----HCTTCH----HHHHHHH
T ss_pred hh-------HHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHH----HCcCCH----HHHHHHH
Confidence 53 46889999999999 99999999999999 466544 4455566
Q ss_pred HHH
Q 008246 521 SAL 523 (572)
Q Consensus 521 ~~l 523 (572)
.++
T Consensus 123 ~~l 125 (126)
T 4gco_A 123 NCL 125 (126)
T ss_dssp HHC
T ss_pred Hhc
Confidence 553
No 16
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=3.9e-14 Score=136.42 Aligned_cols=177 Identities=14% Similarity=0.119 Sum_probs=146.8
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
..++..+|.++..++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+++|+++++. +
T Consensus 47 ~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~ 121 (243)
T 2q7f_A 47 TKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA-----G 121 (243)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----T
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----C
Confidence 35677788889999999999999999999999999999999999999999999999999999999999999985 5
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhh-----HHHHHhh-------hhhHhhhhhhccHHHHHHHHHHHhcCCCCCCC
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNF-----FELVQQG-------QLKLLSFVSQEKWEEGIAHLERIGNLKEPEEP 506 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~~-------~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp 506 (572)
|.+. .++..+|.++...|+.+. .++.... ...+.++...|++++|++.++++++ .+|
T Consensus 122 ~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~ 190 (243)
T 2q7f_A 122 MENG-------DLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTE----QDP 190 (243)
T ss_dssp CCSH-------HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH----HCT
T ss_pred CCCH-------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCc
Confidence 5543 357778999999885442 1222221 1234567889999999999999998 344
Q ss_pred chhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 507 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 507 ~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
.+. .++..+|.++...|++++|.++|+++++.+|++...+..+..
T Consensus 191 ~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 191 GHA----DAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp TCH----HHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred ccH----HHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 432 466789999999999999999999999999999988777665
No 17
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.61 E-value=5.6e-15 Score=160.13 Aligned_cols=157 Identities=15% Similarity=0.054 Sum_probs=127.4
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHH
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK---------GLLEEAVEYLECA 429 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~---------g~~~eA~~~~~rA 429 (572)
.+++..+|.+++.++.+|..+...|++++|+.+|+++++.+|+ ..++..+|.+|... |++++|+++|++|
T Consensus 127 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~a 205 (474)
T 4abn_A 127 SKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA 205 (474)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHH
Confidence 5677778888888888888888888888888888888888888 68888888888888 8888888888888
Q ss_pred HHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHh--------hchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCC
Q 008246 430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQ--------AAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLK 501 (572)
Q Consensus 430 l~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~--------g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~ 501 (572)
+++ +|++. .+++++|.++... | ++++|++.|+++++
T Consensus 206 l~~-----~p~~~-------~~~~~lg~~~~~~~~~~~~~~g----------------------~~~~A~~~~~~al~-- 249 (474)
T 4abn_A 206 VQM-----DVLDG-------RSWYILGNAYLSLYFNTGQNPK----------------------ISQQALSAYAQAEK-- 249 (474)
T ss_dssp HHH-----CTTCH-------HHHHHHHHHHHHHHHHTTCCHH----------------------HHHHHHHHHHHHHH--
T ss_pred HHh-----CCCCH-------HHHHHHHHHHHHHHHhhccccc----------------------hHHHHHHHHHHHHH--
Confidence 875 55543 3567788888777 6 99999999999999
Q ss_pred CCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 502 EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 502 ~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
.+|.. .....++.++|.+|...|++++|+++|+++++++|++...+..+..
T Consensus 250 --~~p~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~ 300 (474)
T 4abn_A 250 --VDRKA-SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQ 300 (474)
T ss_dssp --HCGGG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred --hCCCc-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45510 0123577889999999999999999999999999999876555444
No 18
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.59 E-value=3.9e-15 Score=136.37 Aligned_cols=116 Identities=9% Similarity=-0.001 Sum_probs=87.6
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHH
Q 008246 390 PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFE 469 (572)
Q Consensus 390 ~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~ 469 (572)
..++++++++|+++++++.+|.++.+.|++++|+.+|++++++ +|+++ .+|+++|.++..+|
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~-------~~~~~lg~~~~~~g------ 84 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYNV-------DYIMGLAAIYQIKE------ 84 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTT------
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHHHHHHHHHHHc------
Confidence 3466677788888888888888888888888888888888875 66553 35677788888888
Q ss_pred HHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008246 470 LVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 470 a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~ 547 (572)
++++|+++|++++++ +|++. .+++++|.+|..+|++++|+++|+++++++|+..
T Consensus 85 ----------------~~~~Ai~~~~~al~l----~P~~~----~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 85 ----------------QFQQAADLYAVAFAL----GKNDY----TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp ----------------CHHHHHHHHHHHHHH----SSSCC----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred ----------------cHHHHHHHHHHHHhh----CCCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888883 44332 4566788888888888888888888888887753
No 19
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.59 E-value=7e-14 Score=141.96 Aligned_cols=186 Identities=18% Similarity=0.088 Sum_probs=148.3
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008246 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P 439 (572)
.++..+|.++..+..+|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+++|+++++. +|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~ 219 (359)
T 3ieg_A 145 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-----DQ 219 (359)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CT
T ss_pred HHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----Cc
Confidence 4566677789999999999999999999999999999999999999999999999999999999999999986 66
Q ss_pred CChhhhhHHH-----HHHHHHHHHHHHhhchhh-----HHHHHh-----------hhhhHhhhhhhccHHHHHHHHHHHh
Q 008246 440 TEPEAIDLLI-----VASQWSGVACIRQAAHNF-----FELVQQ-----------GQLKLLSFVSQEKWEEGIAHLERIG 498 (572)
Q Consensus 440 ~~~~~~~~~~-----~a~~~lG~~~~~~g~~~~-----~~a~~~-----------~~~~~~~~~~~g~~~eAi~~l~kal 498 (572)
++........ .....+|.++.+.|+.+. .++... ....+.++...|++++|++.|++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 299 (359)
T 3ieg_A 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299 (359)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 6642111110 012345778888885442 112211 1123467888999999999999999
Q ss_pred cCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccccch
Q 008246 499 NLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDE 558 (572)
Q Consensus 499 ~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~~~~ 558 (572)
+ .+|.+. .++..+|.++...|++++|.++|+++++++|++......+.+...
T Consensus 300 ~----~~~~~~----~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 300 Q----MEPDNV----NALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp H----HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred H----hCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 9 355433 567789999999999999999999999999999998888887433
No 20
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.57 E-value=4.9e-14 Score=129.01 Aligned_cols=146 Identities=19% Similarity=0.225 Sum_probs=117.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008246 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (572)
Q Consensus 361 ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~ 440 (572)
++..++.++..++.+|..+...|++++|+.+++++++.+|++..++..+|.++...|++++|.++|+++++. +|.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~ 108 (186)
T 3as5_A 34 VYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-----NPI 108 (186)
T ss_dssp TCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcH
Confidence 344455567788888888888888888888888888888888888888888888888888888888888874 444
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHH
Q 008246 441 EPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA 520 (572)
Q Consensus 441 ~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg 520 (572)
+. .++..+|.++...| ++++|++.++++++ .+|.+. .++..+|
T Consensus 109 ~~-------~~~~~~a~~~~~~~----------------------~~~~A~~~~~~~~~----~~~~~~----~~~~~la 151 (186)
T 3as5_A 109 NF-------NVRFRLGVALDNLG----------------------RFDEAIDSFKIALG----LRPNEG----KVHRAIA 151 (186)
T ss_dssp CH-------HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH----HCTTCH----HHHHHHH
T ss_pred hH-------HHHHHHHHHHHHcC----------------------cHHHHHHHHHHHHh----cCccch----HHHHHHH
Confidence 32 34667788888888 99999999999998 344332 5667899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 521 SALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 521 ~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
.++...|++++|.++++++++.+|++..
T Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 152 FSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 9999999999999999999999887653
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.57 E-value=3e-14 Score=143.35 Aligned_cols=176 Identities=13% Similarity=0.097 Sum_probs=138.8
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008246 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P 439 (572)
+++..+|.++..+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+++|+++++. +|
T Consensus 116 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~ 190 (330)
T 3hym_B 116 KATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI-----AP 190 (330)
T ss_dssp HHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CT
T ss_pred HHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----CC
Confidence 4556666677888888999999999999999999999999998888989999999999999999999988874 55
Q ss_pred CChhhhhHHHHHHHHHHHHHHHhhchhh-----HHHHHhh----------------hhhHhhhhhhccHHHHHHHHHHHh
Q 008246 440 TEPEAIDLLIVASQWSGVACIRQAAHNF-----FELVQQG----------------QLKLLSFVSQEKWEEGIAHLERIG 498 (572)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~~----------------~~~~~~~~~~g~~~eAi~~l~kal 498 (572)
++. .++..+|.++...|+.+. .++.... ...+.++...|++++|++.|++++
T Consensus 191 ~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 191 EDP-------FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp TCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCh-------HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 542 356778888888885442 2222221 123456778889999999999999
Q ss_pred cCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 499 NLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 499 ~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
++ +|.+ ..++..+|.++...|++++|.++|+++++++|++...+..+..
T Consensus 264 ~~----~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 312 (330)
T 3hym_B 264 VL----IPQN----ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312 (330)
T ss_dssp HH----STTC----SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHH
T ss_pred hh----Cccc----hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHH
Confidence 93 4433 2567789999999999999999999999999999887766655
No 22
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.57 E-value=1.4e-14 Score=132.66 Aligned_cols=108 Identities=10% Similarity=0.075 Sum_probs=101.9
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
..++..+|.+++.++.+|..+.+.|++++|+.+|+++++.+|+++.+|+.+|.+|...|++++|+++|++|+++ +
T Consensus 26 ~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-----~ 100 (151)
T 3gyz_A 26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-----G 100 (151)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----S
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----C
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999996 7
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcC
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNL 500 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l 500 (572)
|+++ .+++++|.++..+| ++++|+.+|++++++
T Consensus 101 P~~~-------~~~~~lg~~~~~lg----------------------~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 101 KNDY-------TPVFHTGQCQLRLK----------------------APLKAKECFELVIQH 133 (151)
T ss_dssp SSCC-------HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHH
T ss_pred CCCc-------HHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHh
Confidence 7765 46889999999999 999999999999994
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.57 E-value=3.3e-14 Score=146.58 Aligned_cols=180 Identities=16% Similarity=0.114 Sum_probs=115.3
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
..++..+|.++..++.+|..+...|++++|+..|+++++.+|+++.++..+|.+|...|++++|+++|++++++ +
T Consensus 89 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~ 163 (365)
T 4eqf_A 89 EAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ-----N 163 (365)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred HHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----C
Confidence 56677788889999999999999999999999999999999999999999999999999999999999999985 3
Q ss_pred CCChhhhhHH---HHHHHHHHHHHHHhhchhh-----HHHHHhhh---------hhHhhhhhhccHHHHHHHHHHHhcCC
Q 008246 439 PTEPEAIDLL---IVASQWSGVACIRQAAHNF-----FELVQQGQ---------LKLLSFVSQEKWEEGIAHLERIGNLK 501 (572)
Q Consensus 439 P~~~~~~~~~---~~a~~~lG~~~~~~g~~~~-----~~a~~~~~---------~~~~~~~~~g~~~eAi~~l~kal~l~ 501 (572)
|++....... ...+..+|.++...|+.+. .++....+ ..+.++...|++++|++.|+++++
T Consensus 164 p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-- 241 (365)
T 4eqf_A 164 PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT-- 241 (365)
T ss_dssp HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--
T ss_pred ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 3321100000 0111223445554442221 11111111 123345566666777777766666
Q ss_pred CCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008246 502 EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 551 (572)
Q Consensus 502 ~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~ 551 (572)
.+|.+. .++..+|.++...|++++|+++|+++++.+|++...+.
T Consensus 242 --~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 285 (365)
T 4eqf_A 242 --VRPEDY----SLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRY 285 (365)
T ss_dssp --HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred --hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH
Confidence 233322 34555666666666666666666666666666554333
No 24
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.57 E-value=4.5e-15 Score=168.17 Aligned_cols=148 Identities=11% Similarity=0.007 Sum_probs=133.0
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 363 SVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 363 ~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
..+|.+++.++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.+|...|++++|+++|++|+++ +|++.
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~ 501 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT-----FPGEL 501 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCS
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCh
Confidence 7788899999999999999999999999999999999999999999999999999999999999999986 67664
Q ss_pred hhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHH
Q 008246 443 EAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA 522 (572)
Q Consensus 443 ~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~ 522 (572)
.+++++|.++.++| ++++ ++.|+++++ .+|++. .++.++|.+
T Consensus 502 -------~~~~~lg~~~~~~g----------------------~~~~-~~~~~~al~----~~P~~~----~a~~~lg~~ 543 (681)
T 2pzi_A 502 -------APKLALAATAELAG----------------------NTDE-HKFYQTVWS----TNDGVI----SAAFGLARA 543 (681)
T ss_dssp -------HHHHHHHHHHHHHT----------------------CCCT-TCHHHHHHH----HCTTCH----HHHHHHHHH
T ss_pred -------HHHHHHHHHHHHcC----------------------ChHH-HHHHHHHHH----hCCchH----HHHHHHHHH
Confidence 46788999999999 9999 999999999 466543 567789999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 008246 523 LCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 553 (572)
Q Consensus 523 l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l 553 (572)
+.++|++++|+++|+++++++|++..++.++
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~ 574 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTS 574 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhcccCcccHHHHHHH
Confidence 9999999999999999999999987765443
No 25
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.56 E-value=2e-14 Score=145.23 Aligned_cols=148 Identities=18% Similarity=0.137 Sum_probs=125.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008246 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~ 445 (572)
|.+.+.++.+|..+.+.|++++|+..|+++++.+|+++++++.+|.++.+.|++++|+.+|+++++. +|+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----~p~~---- 184 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----DQDT---- 184 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----GCSH----
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----hcch----
Confidence 5567889999999999999999999999999999999999999999999999999999999999874 4421
Q ss_pred hHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHH
Q 008246 446 DLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN 525 (572)
Q Consensus 446 ~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~ 525 (572)
...+...+..+.+.+ +.++|++.|+++++ .+|++. ++++.+|.+|..
T Consensus 185 ---~~~~~~~~~~l~~~~----------------------~~~~a~~~l~~al~----~~P~~~----~~~~~la~~l~~ 231 (287)
T 3qou_A 185 ---RYQGLVAQIELLXQA----------------------ADTPEIQQLQQQVA----ENPEDA----ALATQLALQLHQ 231 (287)
T ss_dssp ---HHHHHHHHHHHHHHH----------------------TSCHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhhc----------------------ccCccHHHHHHHHh----cCCccH----HHHHHHHHHHHH
Confidence 123455666677777 88899999999999 456543 567789999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC--HHHHHhccc
Q 008246 526 VGRNAEAEKYLRLAAAHNPQY--NELLEQLEN 555 (572)
Q Consensus 526 ~g~~eeA~~~l~~aL~l~P~~--~~~l~~l~~ 555 (572)
.|++++|++.|+++++.+|++ ...+..+..
T Consensus 232 ~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 232 VGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 999999999999999999998 555444443
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.56 E-value=8.7e-14 Score=143.42 Aligned_cols=170 Identities=16% Similarity=0.078 Sum_probs=135.6
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~ 447 (572)
+...++.+|..+...|++++|+.+|+++++.+|+++.+++.+|.+|...|++++|+++|++++++ +|++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~----- 133 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL-----QPNNL----- 133 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCH-----
Confidence 34568999999999999999999999999999999999999999999999999999999999986 56553
Q ss_pred HHHHHHHHHHHHHHhhchhh-----HHHHHhhhh-----------------hHhhhhhhccHHHHHHHHHHHhcCCCCCC
Q 008246 448 LIVASQWSGVACIRQAAHNF-----FELVQQGQL-----------------KLLSFVSQEKWEEGIAHLERIGNLKEPEE 505 (572)
Q Consensus 448 ~~~a~~~lG~~~~~~g~~~~-----~~a~~~~~~-----------------~~~~~~~~g~~~eAi~~l~kal~l~~p~d 505 (572)
.++..+|.++...|+.+. .++....+. .+.++...|++++|++.|++++++ +
T Consensus 134 --~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~ 207 (365)
T 4eqf_A 134 --KALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ----N 207 (365)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH----S
T ss_pred --HHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh----C
Confidence 467889999999995442 222222221 144677899999999999999993 4
Q ss_pred CchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 506 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 506 p~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
|... ...++..+|.++...|++++|+++|+++++.+|++...+..+..
T Consensus 208 p~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 255 (365)
T 4eqf_A 208 GDMI--DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGA 255 (365)
T ss_dssp CSSC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCcc--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4310 12466789999999999999999999999999998776554443
No 27
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.55 E-value=1.2e-14 Score=132.19 Aligned_cols=118 Identities=16% Similarity=0.059 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhh
Q 008246 388 PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNF 467 (572)
Q Consensus 388 A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~ 467 (572)
+...|+++++.+|++..+++.+|.++...|++++|+.+|+++++. +|+++ .+++++|.++...|
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~lg~~~~~~g---- 69 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDS-------RFFLGLGACRQAMG---- 69 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTT----
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CcccH-------HHHHHHHHHHHHHh----
Confidence 344567777777777777777777777777777777777777764 55443 34566777777777
Q ss_pred HHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008246 468 FELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 468 ~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~ 547 (572)
++++|++.|++++++ +|++. .++.++|.+|...|++++|+++|+++++++|++.
T Consensus 70 ------------------~~~~A~~~~~~al~l----~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 70 ------------------QYDLAIHSYSYGAVM----DIXEP----RFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp ------------------CHHHHHHHHHHHHHH----STTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred ------------------hHHHHHHHHHHHHhc----CCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 777777777777773 33322 4455677777777777777777777777766643
No 28
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.55 E-value=9.5e-14 Score=144.57 Aligned_cols=177 Identities=17% Similarity=0.135 Sum_probs=139.7
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
.+++..+|.++..+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++.+ +
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~ 233 (388)
T 1w3b_A 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-----S 233 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-----C
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----C
Confidence 35666778888899999999999999999999999999999999999999999999999999999999999985 5
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhh-----HHHHHhhh-------hhHhhhhhhccHHHHHHHHHHHhcCCCCCCC
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNF-----FELVQQGQ-------LKLLSFVSQEKWEEGIAHLERIGNLKEPEEP 506 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~~~-------~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp 506 (572)
|++. .++..+|.++...|+.+. .++++..+ ..+.++...|++++|++.|+++++ .+|
T Consensus 234 p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p 302 (388)
T 1w3b_A 234 PNHA-------VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR----LCP 302 (388)
T ss_dssp TTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH----HCT
T ss_pred cCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCc
Confidence 5543 356778999988885442 22222221 234567788999999999999998 344
Q ss_pred chhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 507 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 507 ~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
.+. .++..+|.++...|++++|+++|+++++.+|++......+..
T Consensus 303 ~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 347 (388)
T 1w3b_A 303 THA----DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347 (388)
T ss_dssp TCH----HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 433 456678999999999999999999999999988776655443
No 29
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.55 E-value=6.9e-14 Score=154.41 Aligned_cols=154 Identities=18% Similarity=0.108 Sum_probs=131.0
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
.+++..+|.+++.++.+|..+...|++++|++.|+++++.+|+++.+++.+|.+|...|++++|+++|++|+++ +
T Consensus 13 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~ 87 (568)
T 2vsy_A 13 RAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA-----A 87 (568)
T ss_dssp --------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----C
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999986 6
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHH
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV 518 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~ 518 (572)
|++. .+++++|.++.+.| ++++|++.|+++++ .+|++. .++..
T Consensus 88 p~~~-------~~~~~la~~~~~~g----------------------~~~~A~~~~~~al~----~~p~~~----~~~~~ 130 (568)
T 2vsy_A 88 PEHP-------GIALWLGHALEDAG----------------------QAEAAAAAYTRAHQ----LLPEEP----YITAQ 130 (568)
T ss_dssp TTCH-------HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH----HCTTCH----HHHHH
T ss_pred CCCH-------HHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHH----hCCCCH----HHHHH
Confidence 6553 46788999999999 99999999999999 455433 56678
Q ss_pred HHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHhcc
Q 008246 519 LASALCNV---GRNAEAEKYLRLAAAHNPQYNELLEQLE 554 (572)
Q Consensus 519 Lg~~l~~~---g~~eeA~~~l~~aL~l~P~~~~~l~~l~ 554 (572)
+|.++... |++++|.+.|+++++.+|+....+..+.
T Consensus 131 l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 131 LLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 99999999 9999999999999999998765544443
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2e-13 Score=132.27 Aligned_cols=172 Identities=15% Similarity=0.140 Sum_probs=135.0
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~ 447 (572)
.++.+..+|..+...|++++|+.+|+++++.+ +++.+++.+|.++...|++++|+++|++++++ +|++......
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~ 77 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ-----GREMRADYKV 77 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CcccccchHH
Confidence 36789999999999999999999999999999 99999999999999999999999999999985 3332111112
Q ss_pred HHHHHHHHHHHHHHhhchhh-----HHHHH--------------------------hhh-------hhHhhhhhhccHHH
Q 008246 448 LIVASQWSGVACIRQAAHNF-----FELVQ--------------------------QGQ-------LKLLSFVSQEKWEE 489 (572)
Q Consensus 448 ~~~a~~~lG~~~~~~g~~~~-----~~a~~--------------------------~~~-------~~~~~~~~~g~~~e 489 (572)
...++..+|.++...|+.+. .++.. ..+ ..+.++...|++++
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence 24578889999999985442 12222 111 12345778899999
Q ss_pred HHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 008246 490 GIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 553 (572)
Q Consensus 490 Ai~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l 553 (572)
|++.|+++++ .+|.+. .++..+|.++...|++++|+++++++++.+|++...+..+
T Consensus 158 A~~~~~~a~~----~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 213 (258)
T 3uq3_A 158 AVKAYTEMIK----RAPEDA----RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 213 (258)
T ss_dssp HHHHHHHHHH----HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHh----cCcccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9999999998 344432 4667799999999999999999999999999987654433
No 31
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=2.1e-13 Score=129.15 Aligned_cols=169 Identities=15% Similarity=0.077 Sum_probs=134.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008246 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~ 445 (572)
+.++..++.+|..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+++|+++++. +|.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~--- 76 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI-----KPDSA--- 76 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCh---
Confidence 4457888999999999999999999999999999999999999999999999999999999999985 55442
Q ss_pred hHHHHHHHHHHHHHHHh-hchhh-----HHHHH--hh-------hhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhh
Q 008246 446 DLLIVASQWSGVACIRQ-AAHNF-----FELVQ--QG-------QLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKA 510 (572)
Q Consensus 446 ~~~~~a~~~lG~~~~~~-g~~~~-----~~a~~--~~-------~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~ 510 (572)
.++..+|.++... |+.+. .++.. .. ...+.++...|++++|++.++++++ .+|.+.
T Consensus 77 ----~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~- 147 (225)
T 2vq2_A 77 ----EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA----AQPQFP- 147 (225)
T ss_dssp ----HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCH-
T ss_pred ----HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCc-
Confidence 3567788888888 75442 22222 11 1134567788999999999999998 344432
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhcc
Q 008246 511 HYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP-QYNELLEQLE 554 (572)
Q Consensus 511 ~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P-~~~~~l~~l~ 554 (572)
.++..+|.++...|++++|.++++++++.+| +....+..+.
T Consensus 148 ---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 189 (225)
T 2vq2_A 148 ---PAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGW 189 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred ---hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 5667899999999999999999999999999 8877654443
No 32
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.54 E-value=3.5e-13 Score=130.45 Aligned_cols=88 Identities=18% Similarity=0.172 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008246 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (572)
Q Consensus 367 ~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~---~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~ 443 (572)
.+++.++.+|..+...|++++|+..|+++++.+|++ ..+++.+|.+|...|++++|++.|+++++. +|+++.
T Consensus 2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~ 76 (225)
T 2yhc_A 2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPTHPN 76 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCTT
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCCc
Confidence 467899999999999999999999999999999987 489999999999999999999999999986 777641
Q ss_pred hhhHHHHHHHHHHHHHHHhh
Q 008246 444 AIDLLIVASQWSGVACIRQA 463 (572)
Q Consensus 444 ~~~~~~~a~~~lG~~~~~~g 463 (572)
...+++.+|.++.+.|
T Consensus 77 ----~~~a~~~~g~~~~~~~ 92 (225)
T 2yhc_A 77 ----IDYVMYMRGLTNMALD 92 (225)
T ss_dssp ----HHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhhh
Confidence 2246788999988754
No 33
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.54 E-value=2.1e-14 Score=130.62 Aligned_cols=128 Identities=12% Similarity=0.014 Sum_probs=111.2
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
+.+++.+|.++..++.+|..+...|++++|+.+|+++++++|+++.+|+.+|.+|...|++++|+.+|++|+++ +
T Consensus 21 ~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-----~ 95 (150)
T 4ga2_A 21 QGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVEL-----N 95 (150)
T ss_dssp HHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred HHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-----C
Confidence 56777888788889999999999999999999999999999999999999999999999999999999999996 7
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHH-HHHHhcCCCCCCCchhhhhhHHHH
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAH-LERIGNLKEPEEPKSKAHYYDGLV 517 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~-l~kal~l~~p~dp~~~~~~~~al~ 517 (572)
|+++ .+++++|.++.+.| ++++|.+. ++++++ .+|++. .++.
T Consensus 96 p~~~-------~~~~~la~~~~~~~----------------------~~~~aa~~~~~~al~----l~P~~~----~~~~ 138 (150)
T 4ga2_A 96 PTQK-------DLVLKIAELLCKND----------------------VTDGRAKYWVERAAK----LFPGSP----AVYK 138 (150)
T ss_dssp TTCH-------HHHHHHHHHHHHHC----------------------SSSSHHHHHHHHHHH----HSTTCH----HHHH
T ss_pred CCCH-------HHHHHHHHHHHHcC----------------------ChHHHHHHHHHHHHH----hCcCCH----HHHH
Confidence 7664 46788999999999 99887765 599999 456544 4555
Q ss_pred HHHHHHHHcCC
Q 008246 518 VLASALCNVGR 528 (572)
Q Consensus 518 ~Lg~~l~~~g~ 528 (572)
.++.++...|+
T Consensus 139 l~~~ll~~~G~ 149 (150)
T 4ga2_A 139 LKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHHHhCc
Confidence 68888888775
No 34
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.54 E-value=2.4e-13 Score=117.21 Aligned_cols=134 Identities=25% Similarity=0.366 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~ 449 (572)
+.++.+|..+...|++++|+..++++++.+|++..+++.+|.++...|++++|+.+|++++.. .|.+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~------- 69 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSA------- 69 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----CCCch-------
Confidence 467889999999999999999999999999999999999999999999999999999999985 44432
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCH
Q 008246 450 VASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRN 529 (572)
Q Consensus 450 ~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~ 529 (572)
..+..+|.++...| ++++|++.++++++ .+|.+. .++..+|.++...|++
T Consensus 70 ~~~~~l~~~~~~~~----------------------~~~~A~~~~~~~~~----~~~~~~----~~~~~la~~~~~~~~~ 119 (136)
T 2fo7_A 70 EAWYNLGNAYYKQG----------------------DYDEAIEYYQKALE----LDPRSA----EAWYNLGNAYYKQGDY 119 (136)
T ss_dssp HHHHHHHHHHHTTT----------------------CHHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHhc----------------------CHHHHHHHHHHHHH----hCCCCh----HHHHHHHHHHHHHccH
Confidence 35677888888888 99999999999998 344332 4567799999999999
Q ss_pred HHHHHHHHHHHHhCCC
Q 008246 530 AEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 530 eeA~~~l~~aL~l~P~ 545 (572)
++|.++++++++.+|+
T Consensus 120 ~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 120 DEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCCC
Confidence 9999999999999986
No 35
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=3e-13 Score=131.45 Aligned_cols=172 Identities=16% Similarity=0.039 Sum_probs=139.4
Q ss_pred cCCCC-HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 364 VENLT-PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 364 ~~~~~-~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
.+|.+ ++.++.+|..+...|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+++|+++++. +|.+.
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~ 105 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS-----DSRNA 105 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCcH
Confidence 34444 7789999999999999999999999999999999999999999999999999999999999985 55442
Q ss_pred hhhhHHHHHHHHHHHHHHHhhchhh-----HHHHH--hhh-------hhHhhhhhhccHHHHHHHHHHHhcCCCCCCCch
Q 008246 443 EAIDLLIVASQWSGVACIRQAAHNF-----FELVQ--QGQ-------LKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKS 508 (572)
Q Consensus 443 ~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~--~~~-------~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~ 508 (572)
.++..+|.++...|+.+. .++.. ... ..+.++...|++++|++.|+++++ .+|.+
T Consensus 106 -------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~ 174 (252)
T 2ho1_A 106 -------RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR----LNRNQ 174 (252)
T ss_dssp -------HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCC
T ss_pred -------HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCccc
Confidence 457888999999885442 12222 111 134567889999999999999999 34443
Q ss_pred hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 509 KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 509 ~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
. .++..+|.++...|++++|.++++++++.+|+....+..+..
T Consensus 175 ~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 217 (252)
T 2ho1_A 175 P----SVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIR 217 (252)
T ss_dssp H----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 2 466789999999999999999999999999998876554433
No 36
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.53 E-value=3.5e-14 Score=153.89 Aligned_cols=158 Identities=13% Similarity=0.059 Sum_probs=131.0
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCc-ccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008246 363 SVENLTPKELIALSVKFLSKGDK-ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (572)
Q Consensus 363 ~~~~~~~~~~~~lA~~~~~~g~~-~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~ 441 (572)
..++.+++.++.+|..+...|++ ++|+.+|+++++++|+++++|+.+|.+|...|++++|+++|++|+++ +|+
T Consensus 96 ~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~- 169 (474)
T 4abn_A 96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH-----CKN- 169 (474)
T ss_dssp TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----CCC-
T ss_pred ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCC-
Confidence 44556789999999999999999 99999999999999999999999999999999999999999999975 333
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHH
Q 008246 442 PEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAS 521 (572)
Q Consensus 442 ~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~ 521 (572)
..++.++|.++...+. .......|++++|++.|+++++ .+|++. .++..+|.
T Consensus 170 -------~~~~~~lg~~~~~~~~-------------~~~~~~~g~~~~A~~~~~~al~----~~p~~~----~~~~~lg~ 221 (474)
T 4abn_A 170 -------KVSLQNLSMVLRQLQT-------------DSGDEHSRHVMDSVRQAKLAVQ----MDVLDG----RSWYILGN 221 (474)
T ss_dssp -------HHHHHHHHHHHTTCCC-------------SCHHHHHHHHHHHHHHHHHHHH----HCTTCH----HHHHHHHH
T ss_pred -------HHHHHHHHHHHHHhcc-------------CChhhhhhhHHHHHHHHHHHHH----hCCCCH----HHHHHHHH
Confidence 1467888999988800 0000111299999999999999 455543 56778999
Q ss_pred HHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHhcc
Q 008246 522 ALCNV--------GRNAEAEKYLRLAAAHNP---QYNELLEQLE 554 (572)
Q Consensus 522 ~l~~~--------g~~eeA~~~l~~aL~l~P---~~~~~l~~l~ 554 (572)
+|... |++++|+++|+++++++| ++...+.++.
T Consensus 222 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg 265 (474)
T 4abn_A 222 AYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRA 265 (474)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHH
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHH
Confidence 99999 999999999999999999 7776555443
No 37
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.53 E-value=1.7e-13 Score=137.89 Aligned_cols=184 Identities=14% Similarity=0.060 Sum_probs=144.8
Q ss_pred hccccCCCCHHHHHHHHHHHHhcC-CcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 360 LKISVENLTPKELIALSVKFLSKG-DKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g-~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
.++..+|.++..++.+|..+...| ++++|+.+|+++++.+|+++.+|..+|.++...|++++|+++|+++++. .
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~ 155 (330)
T 3hym_B 81 KLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL-----M 155 (330)
T ss_dssp HHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----T
T ss_pred HHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----c
Confidence 455566777889999999999999 9999999999999999999999999999999999999999999999985 5
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhh-----HHHHHhh-------hhhHhhhhhhccHHHHHHHHHHHhcCCCCC-C
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNF-----FELVQQG-------QLKLLSFVSQEKWEEGIAHLERIGNLKEPE-E 505 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~~-------~~~~~~~~~~g~~~eAi~~l~kal~l~~p~-d 505 (572)
|.+. .++..+|.++...|+.+. .++.... ...+.++...|++++|+..+++++++.... +
T Consensus 156 ~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 228 (330)
T 3hym_B 156 KGCH-------LPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN 228 (330)
T ss_dssp TTCS-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC
T ss_pred cccH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc
Confidence 5542 346778999999985442 1222222 123556888999999999999999842110 0
Q ss_pred CchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 506 PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 506 p~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
+.....+..++..+|.++...|++++|+++|+++++.+|++...+..+..
T Consensus 229 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~ 278 (330)
T 3hym_B 229 EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGY 278 (330)
T ss_dssp SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 00011234677889999999999999999999999999998765554443
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=3.8e-14 Score=139.35 Aligned_cols=171 Identities=8% Similarity=-0.010 Sum_probs=132.2
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~ 447 (572)
+++.++..|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++|+++++ .|.++ +.
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------~~~~~---~~ 72 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS------KVNAT---KA 72 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT------TSCTT---TC
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh------ccCch---hH
Confidence 5678899999999999999999999999999999999999999999999999999999999996 23222 22
Q ss_pred HHHHHHHHHHHHHHhhchhh-----HHHHHhhh-------hhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHH
Q 008246 448 LIVASQWSGVACIRQAAHNF-----FELVQQGQ-------LKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDG 515 (572)
Q Consensus 448 ~~~a~~~lG~~~~~~g~~~~-----~~a~~~~~-------~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~a 515 (572)
...++..+|.++...|+.+. .++....+ ..+.++...|++++|++.|+++++ .+|.+. .+
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~~~~~----~~ 144 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR----PTTTDP----KV 144 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC----SSCCCH----HH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh----cCCCcH----HH
Confidence 23467889999999995442 22222222 234568889999999999999998 355433 46
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 516 LVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 516 l~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
+..+|......+++++|+++|+++++.+|++...+..+..
T Consensus 145 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 184 (272)
T 3u4t_A 145 FYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRAR 184 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 6779944555669999999999999999998776554443
No 39
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.53 E-value=3.1e-13 Score=138.73 Aligned_cols=179 Identities=16% Similarity=0.112 Sum_probs=125.9
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
..++..+|.++..++.+|..+...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+++|++++.. +
T Consensus 88 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~ 162 (368)
T 1fch_A 88 EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY-----T 162 (368)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----S
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C
Confidence 56777788899999999999999999999999999999999999999999999999999999999999999985 5
Q ss_pred CCChhhhhHH---------HHHHHHHHHHHHHhhchh-----hHHHHHhhh---------hhHhhhhhhccHHHHHHHHH
Q 008246 439 PTEPEAIDLL---------IVASQWSGVACIRQAAHN-----FFELVQQGQ---------LKLLSFVSQEKWEEGIAHLE 495 (572)
Q Consensus 439 P~~~~~~~~~---------~~a~~~lG~~~~~~g~~~-----~~~a~~~~~---------~~~~~~~~~g~~~eAi~~l~ 495 (572)
|.+....... ...+..+|.++ ..|+.+ +.++....+ ..+.++...|++++|++.|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 241 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 241 (368)
T ss_dssp TTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6554221100 00011344444 444222 111222111 12345666777788888887
Q ss_pred HHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008246 496 RIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 551 (572)
Q Consensus 496 kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~ 551 (572)
++++ .+|.+. .++..+|.++...|++++|+++|+++++.+|++...+.
T Consensus 242 ~al~----~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 289 (368)
T 1fch_A 242 AALS----VRPNDY----LLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 289 (368)
T ss_dssp HHHH----HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHH----hCcCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 7777 334322 45566777777778888888888777777777665443
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=6.8e-14 Score=135.54 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHh--------------------------hCCCCHHHHHHHHHHHHHcCCHHHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALN--------------------------KEPDNINALILMGQTQLQKGLLEEA 422 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~--------------------------~dP~~~~a~~~LG~l~~~~g~~~eA 422 (572)
+..++.+|..+...|++++|+.+|+++++ .+|+++.++..+|.++...|++++|
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 68899999999999999999999999999 7788899999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCC
Q 008246 423 VEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKE 502 (572)
Q Consensus 423 ~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~ 502 (572)
+++|+++++. +|.+. .++..+|.++...| ++++|+..++++++
T Consensus 159 ~~~~~~a~~~-----~~~~~-------~~~~~l~~~~~~~~----------------------~~~~A~~~~~~al~--- 201 (258)
T 3uq3_A 159 VKAYTEMIKR-----APEDA-------RGYSNRAAALAKLM----------------------SFPEAIADCNKAIE--- 201 (258)
T ss_dssp HHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhc-----CcccH-------HHHHHHHHHHHHhC----------------------CHHHHHHHHHHHHH---
Confidence 9999999985 55543 45788899999999 99999999999999
Q ss_pred CCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHhccc
Q 008246 503 PEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN------PQYNELLEQLEN 555 (572)
Q Consensus 503 p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~------P~~~~~l~~l~~ 555 (572)
.+|.+. .++..+|.++...|++++|.++|+++++++ |++.+....+.+
T Consensus 202 -~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 202 -KDPNFV----RAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp -HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred -hCHHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 445433 567789999999999999999999999999 888777766654
No 41
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.52 E-value=4.9e-13 Score=135.67 Aligned_cols=165 Identities=12% Similarity=0.097 Sum_probs=134.7
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHH
Q 008246 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (572)
Q Consensus 374 ~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~ 453 (572)
..|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+++|+++++. +|.+. .++.
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~ 192 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL-----KSDNT-------EAFY 192 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CSCCH-------HHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH-------HHHH
Confidence 33899999999999999999999999999999999999999999999999999999974 56553 4678
Q ss_pred HHHHHHHHhhchhh-----HHHHHhhh-------------------hhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchh
Q 008246 454 WSGVACIRQAAHNF-----FELVQQGQ-------------------LKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSK 509 (572)
Q Consensus 454 ~lG~~~~~~g~~~~-----~~a~~~~~-------------------~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~ 509 (572)
.+|.++...|+.+. .++.+..+ ..+.++...|++++|++.++++++ .+|.+.
T Consensus 193 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~ 268 (359)
T 3ieg_A 193 KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK----TEPSVA 268 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSSH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCch
Confidence 89999999995442 11222111 124457889999999999999999 455555
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhcc
Q 008246 510 AHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 554 (572)
Q Consensus 510 ~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~ 554 (572)
.....++..+|.++...|++++|+++|+++++.+|++...+..+.
T Consensus 269 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 455566788999999999999999999999999999876554433
No 42
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.51 E-value=3.9e-13 Score=137.96 Aligned_cols=167 Identities=17% Similarity=0.143 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
...++.+|..+...|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+++|++++++ +|++.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~------ 132 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL-----KPDNQ------ 132 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc-----CCCCH------
Confidence 3568999999999999999999999999999999999999999999999999999999999986 56543
Q ss_pred HHHHHHHHHHHHHhhchhh-----HHHHHhhhh----------------------hHhhhhhhccHHHHHHHHHHHhcCC
Q 008246 449 IVASQWSGVACIRQAAHNF-----FELVQQGQL----------------------KLLSFVSQEKWEEGIAHLERIGNLK 501 (572)
Q Consensus 449 ~~a~~~lG~~~~~~g~~~~-----~~a~~~~~~----------------------~~~~~~~~g~~~eAi~~l~kal~l~ 501 (572)
.++..+|.++...|+.+. .++....+. ....+...|++++|++.|+++++
T Consensus 133 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-- 209 (368)
T 1fch_A 133 -TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR-- 209 (368)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH--
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHH--
Confidence 467889999999995442 112221111 12233488999999999999999
Q ss_pred CCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 008246 502 EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 553 (572)
Q Consensus 502 ~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l 553 (572)
.+|... ...++..+|.++...|++++|+++|+++++.+|++...+..+
T Consensus 210 --~~p~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 257 (368)
T 1fch_A 210 --LDPTSI--DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL 257 (368)
T ss_dssp --HSTTSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred --hCcCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 344311 125667899999999999999999999999999987655443
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=2.6e-13 Score=133.20 Aligned_cols=170 Identities=18% Similarity=0.119 Sum_probs=127.5
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008246 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~ 445 (572)
+.++..++.+|..+...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+++|++++++ +|.+.
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~--- 111 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-----DPTYN--- 111 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCT---
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----Ccccc---
Confidence 3457889999999999999999999999999999999999999999999999999999999999985 55543
Q ss_pred hHHHHHHHHHHHHHHHhhchhh-----HHHHHhhhh------hHhhhhhhccHHHHHHHHHHHhcCCCCCC---------
Q 008246 446 DLLIVASQWSGVACIRQAAHNF-----FELVQQGQL------KLLSFVSQEKWEEGIAHLERIGNLKEPEE--------- 505 (572)
Q Consensus 446 ~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~~~~------~~~~~~~~g~~~eAi~~l~kal~l~~p~d--------- 505 (572)
.++..+|.++...|+.+. .++....+. ........|++++|+..+++++... |.+
T Consensus 112 ----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 186 (275)
T 1xnf_A 112 ----YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWNIVEF 186 (275)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHHHHHH
T ss_pred ----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHHHHHH
Confidence 467888999999885442 122222111 1122344567777777776666521 111
Q ss_pred ---------------------CchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 506 ---------------------PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 506 ---------------------p~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
|........++..+|.++...|++++|..+|+++++.+|++..
T Consensus 187 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 187 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp HTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred HHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 1111112467788999999999999999999999999996544
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=2.6e-13 Score=128.58 Aligned_cols=177 Identities=14% Similarity=0.102 Sum_probs=141.4
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhhcCC
Q 008246 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQK-GLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~-g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
.++..+|.++..+..+|..+...|++++|+.+|+++++.+|++..++..+|.++... |++++|+.+|+++++ .
T Consensus 33 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~ 106 (225)
T 2vq2_A 33 DALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA------D 106 (225)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------S
T ss_pred HHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------C
Confidence 455566677889999999999999999999999999999999999999999999999 999999999999995 2
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhh-----HHHHHhhh-------hhHhhhhhhccHHHHHHHHHHHhcCCCCCCC
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNF-----FELVQQGQ-------LKLLSFVSQEKWEEGIAHLERIGNLKEPEEP 506 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~~~-------~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp 506 (572)
|.++ ....++..+|.++...|+.+. .++....+ ..+.++...|++++|++.++++++ .+|
T Consensus 107 ~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~ 178 (225)
T 2vq2_A 107 PTYP----TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQS----RVE 178 (225)
T ss_dssp TTCS----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHC
T ss_pred cCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCC
Confidence 2222 112467888999999985442 12222221 234568889999999999999999 344
Q ss_pred -chhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhcc
Q 008246 507 -KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 554 (572)
Q Consensus 507 -~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~ 554 (572)
.+. ..+..++.++...|+.++|..+++.+++.+|++......+.
T Consensus 179 ~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 179 VLQA----DDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred CCCH----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence 332 34567888999999999999999999999999988766553
No 45
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.51 E-value=4.7e-14 Score=126.46 Aligned_cols=116 Identities=14% Similarity=0.048 Sum_probs=61.1
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHH
Q 008246 390 PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFE 469 (572)
Q Consensus 390 ~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~ 469 (572)
..|+++++.+|++..+++.+|..+...|++++|+.+|++++.. +|++. .+++.+|.++.+.|
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~lg~~~~~~g------ 66 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML-----DHYDA-------RYFLGLGACRQSLG------ 66 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTT------
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCccH-------HHHHHHHHHHHHHh------
Confidence 3455555555555555555565555566666666666555553 44332 23455555555555
Q ss_pred HHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008246 470 LVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 470 a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~ 547 (572)
++++|+.+|++++++ +|.+. .++..+|.++...|++++|+++|+++++++|++.
T Consensus 67 ----------------~~~~A~~~~~~al~~----~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 67 ----------------LYEQALQSYSYGALM----DINEP----RFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp ----------------CHHHHHHHHHHHHHH----CTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred ----------------hHHHHHHHHHHHHhc----CCCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 556666666655552 22221 3344556666666666666666666666555443
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=5.4e-13 Score=129.65 Aligned_cols=171 Identities=13% Similarity=0.015 Sum_probs=108.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008246 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~ 445 (572)
+.++..++.+|..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+++|+++++ .+.++.
T Consensus 68 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~-- 139 (252)
T 2ho1_A 68 PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPE-- 139 (252)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTT--
T ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcc--
Confidence 334555666666666666666666666666666666666666666666666666666666666653 111110
Q ss_pred hHHHHHHHHHHHHHHHhhchhh-----HHHHHhh-------hhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhh
Q 008246 446 DLLIVASQWSGVACIRQAAHNF-----FELVQQG-------QLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYY 513 (572)
Q Consensus 446 ~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~~-------~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~ 513 (572)
...++..+|.++...|+.+. .++.... ...+.++...|++++|++.++++++ .+|.+.
T Consensus 140 --~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~---- 209 (252)
T 2ho1_A 140 --RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQ----GGGQNA---- 209 (252)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TSCCCH----
T ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCcH----
Confidence 11244555666666553321 1111111 1123345556699999999999998 444433
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhcc
Q 008246 514 DGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 554 (572)
Q Consensus 514 ~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~ 554 (572)
.++..++.++...|++++|.++++++++.+|++......++
T Consensus 210 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 250 (252)
T 2ho1_A 210 RSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQA 250 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHHT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHHh
Confidence 45677999999999999999999999999999987765543
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=9.2e-14 Score=136.59 Aligned_cols=174 Identities=14% Similarity=0.142 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
...++.+|..+...|++++|+.+|+++++.+|+++.++..+|.+|...|++++|+++|+++++. +|.+.
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~------ 142 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-----TTTDP------ 142 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----SCCCH------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----CCCcH------
Confidence 4567777777777777777777777777777777777777777777777777777777777753 44442
Q ss_pred HHHHHHHH-HHHHHhhchh-----hHHHHHhhhh-------hHhhhhhhcc---HHHHHHHHHHHhcCCCCCCCch-hhh
Q 008246 449 IVASQWSG-VACIRQAAHN-----FFELVQQGQL-------KLLSFVSQEK---WEEGIAHLERIGNLKEPEEPKS-KAH 511 (572)
Q Consensus 449 ~~a~~~lG-~~~~~~g~~~-----~~~a~~~~~~-------~~~~~~~~g~---~~eAi~~l~kal~l~~p~dp~~-~~~ 511 (572)
.++.++| .++. .++.+ +.++++..+. .+.++...|+ +++|+..|++++++.. ..|.. ...
T Consensus 143 -~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~ 219 (272)
T 3u4t_A 143 -KVFYELGQAYYY-NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA-PGGAKYKDE 219 (272)
T ss_dssp -HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG-GGGGGGHHH
T ss_pred -HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh-cccccchHH
Confidence 3456666 4333 33111 1112222211 2334455557 8889999999998421 11221 122
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhcccc
Q 008246 512 YYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENN 556 (572)
Q Consensus 512 ~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~~ 556 (572)
...++..+|.++...|++++|.++|+++++++|++..+.+.+...
T Consensus 220 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 220 LIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 346788899999999999999999999999999999999888773
No 48
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.50 E-value=5.3e-13 Score=146.60 Aligned_cols=176 Identities=14% Similarity=0.095 Sum_probs=136.1
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008246 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P 439 (572)
.++..+|.+...+..+|..+...|++++|++.|+++++.+|++..++..+|.+|...|++++|+++|+++++. +|
T Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~ 472 (597)
T 2xpi_A 398 KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-----FQ 472 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC
Confidence 4555667778888888888888888888888888888888888888888888888888888888888888875 55
Q ss_pred CChhhhhHHHHHHHHHHHHHHHhhchhh-----HHHHHh--------------hhhhHhhhhhhccHHHHHHHHHHHhcC
Q 008246 440 TEPEAIDLLIVASQWSGVACIRQAAHNF-----FELVQQ--------------GQLKLLSFVSQEKWEEGIAHLERIGNL 500 (572)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~--------------~~~~~~~~~~~g~~~eAi~~l~kal~l 500 (572)
.++ .++..+|.++.+.|+.+. .++.+. ....+.++...|++++|++.|++++++
T Consensus 473 ~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 473 YDP-------LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp CCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCh-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 543 356778888888885442 222222 112345677889999999999999983
Q ss_pred CCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 501 KEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 501 ~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
+|.+. .++..+|.+|...|++++|.++|+++++++|++......+.+
T Consensus 546 ----~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 546 ----STNDA----NVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592 (597)
T ss_dssp ----SSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ----CCCCh----HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 44433 466779999999999999999999999999999887776655
No 49
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.50 E-value=5e-13 Score=122.22 Aligned_cols=143 Identities=16% Similarity=0.279 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
...++.+|..+...|++++|+..++++++.+|++..+++.+|.++...|++++|+++++++++. +|.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~------ 76 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-----APDNV------ 76 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH------
Confidence 5678899999999999999999999999999999999999999999999999999999999985 55442
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCC
Q 008246 449 IVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 528 (572)
Q Consensus 449 ~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~ 528 (572)
.++..+|.++...| ++++|++.++++++ .+|.+. .++..+|.++...|+
T Consensus 77 -~~~~~~a~~~~~~~----------------------~~~~A~~~~~~~~~----~~~~~~----~~~~~~a~~~~~~~~ 125 (186)
T 3as5_A 77 -KVATVLGLTYVQVQ----------------------KYDLAVPLLIKVAE----ANPINF----NVRFRLGVALDNLGR 125 (186)
T ss_dssp -HHHHHHHHHHHHHT----------------------CHHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHHhc----------------------CHHHHHHHHHHHHh----cCcHhH----HHHHHHHHHHHHcCc
Confidence 35778899999999 99999999999999 344432 466789999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHhc
Q 008246 529 NAEAEKYLRLAAAHNPQYNELLEQL 553 (572)
Q Consensus 529 ~eeA~~~l~~aL~l~P~~~~~l~~l 553 (572)
+++|.++++++++.+|+....+..+
T Consensus 126 ~~~A~~~~~~~~~~~~~~~~~~~~l 150 (186)
T 3as5_A 126 FDEAIDSFKIALGLRPNEGKVHRAI 150 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccchHHHHHH
Confidence 9999999999999999987655443
No 50
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.49 E-value=1.6e-13 Score=124.62 Aligned_cols=115 Identities=13% Similarity=0.103 Sum_probs=104.1
Q ss_pred hhhhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q 008246 357 AKQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436 (572)
Q Consensus 357 ~~~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~ 436 (572)
.+.+++..+|.+++.++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+++|++|+++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---- 84 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---- 84 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 4567888999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCC
Q 008246 437 GHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEP 506 (572)
Q Consensus 437 ~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp 506 (572)
+|+++ .+++++|.++...| ++++|++.|++++++ .|.+|
T Consensus 85 -~p~~~-------~~~~~lg~~~~~~g----------------------~~~~A~~~~~~al~~-~p~~~ 123 (148)
T 2vgx_A 85 -DIXEP-------RFPFHAAECLLQXG----------------------ELAEAESGLFLAQEL-IANXP 123 (148)
T ss_dssp -STTCT-------HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHH-HTTCG
T ss_pred -CCCCc-------hHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHH-CcCCC
Confidence 67664 46788999999999 999999999999994 23444
No 51
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.49 E-value=2.1e-13 Score=122.17 Aligned_cols=109 Identities=13% Similarity=0.110 Sum_probs=99.8
Q ss_pred hhhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008246 358 KQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAG 437 (572)
Q Consensus 358 ~~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~ 437 (572)
...++..+|.+.+.++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.+|++|+++
T Consensus 7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----- 81 (142)
T 2xcb_A 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM----- 81 (142)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 346788888889999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcC
Q 008246 438 HPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNL 500 (572)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l 500 (572)
+|+++ .+++++|.++...| ++++|+++|++++++
T Consensus 82 ~p~~~-------~~~~~lg~~~~~~g----------------------~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 82 DINEP-------RFPFHAAECHLQLG----------------------DLDGAESGFYSARAL 115 (142)
T ss_dssp CTTCT-------HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHH
T ss_pred CCCCc-------HHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHh
Confidence 67664 35788999999999 999999999999994
No 52
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.49 E-value=2e-13 Score=126.27 Aligned_cols=128 Identities=15% Similarity=0.119 Sum_probs=108.2
Q ss_pred HHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHH
Q 008246 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA 458 (572)
Q Consensus 379 ~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~ 458 (572)
+...|++++|+..|+++++.+|+++.+|+.+|.+|...|++++|+.+|++++++ +|++. .++..+|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~~~~~la~~ 87 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL-----RGENA-------ELYAALATV 87 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HCSCH-------HHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCH-------HHHHHHHHH
Confidence 356899999999999999999999999999999999999999999999999986 55542 357788888
Q ss_pred -HHHhhchhhHHHHHhhhhhHhhhhhhccH--HHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 008246 459 -CIRQAAHNFFELVQQGQLKLLSFVSQEKW--EEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKY 535 (572)
Q Consensus 459 -~~~~g~~~~~~a~~~~~~~~~~~~~~g~~--~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~ 535 (572)
+...| ++ ++|+..|+++++ .+|.+. .++..+|.++...|++++|+.+
T Consensus 88 l~~~~~----------------------~~~~~~A~~~~~~al~----~~p~~~----~~~~~la~~~~~~g~~~~A~~~ 137 (177)
T 2e2e_A 88 LYYQAS----------------------QHMTAQTRAMIDKALA----LDSNEI----TALMLLASDAFMQANYAQAIEL 137 (177)
T ss_dssp HHHHTT----------------------TCCCHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhcC----------------------CcchHHHHHHHHHHHH----hCCCcH----HHHHHHHHHHHHcccHHHHHHH
Confidence 77888 98 999999999999 455443 5667899999999999999999
Q ss_pred HHHHHHhCCCCHH
Q 008246 536 LRLAAAHNPQYNE 548 (572)
Q Consensus 536 l~~aL~l~P~~~~ 548 (572)
|+++++.+|++..
T Consensus 138 ~~~al~~~p~~~~ 150 (177)
T 2e2e_A 138 WQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHTCCTTSC
T ss_pred HHHHHhhCCCCcc
Confidence 9999999998754
No 53
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.49 E-value=6.8e-13 Score=134.35 Aligned_cols=150 Identities=12% Similarity=0.130 Sum_probs=107.8
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMG--QTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG--~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~ 445 (572)
+++.+..+|..+...|++++|++.|+++++.+|++.......| .++...|++++|+.+|+++++. +|+++
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-----~p~~~--- 200 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-----CSPTL--- 200 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----SCCCH---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-----CCCcH---
Confidence 4566666777777777777777777777777777654444433 2233446677777777777764 44432
Q ss_pred hHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHH
Q 008246 446 DLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN 525 (572)
Q Consensus 446 ~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~ 525 (572)
.+++++|.++.+.| ++++|++.|+++++ .+|++. +++.++|.++..
T Consensus 201 ----~~~~~la~~~~~~g----------------------~~~eA~~~l~~al~----~~p~~~----~~l~~l~~~~~~ 246 (291)
T 3mkr_A 201 ----LLLNGQAACHMAQG----------------------RWEAAEGVLQEALD----KDSGHP----ETLINLVVLSQH 246 (291)
T ss_dssp ----HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHH----hCCCCH----HHHHHHHHHHHH
Confidence 24566677776666 99999999999999 455443 567789999999
Q ss_pred cCCHHH-HHHHHHHHHHhCCCCHHHHHhccccchHH
Q 008246 526 VGRNAE-AEKYLRLAAAHNPQYNELLEQLENNDEEF 560 (572)
Q Consensus 526 ~g~~ee-A~~~l~~aL~l~P~~~~~l~~l~~~~~~~ 560 (572)
.|+.++ +.++++++++++|++.......++ ..+|
T Consensus 247 ~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~-~~~f 281 (291)
T 3mkr_A 247 LGKPPEVTNRYLSQLKDAHRSHPFIKEYRAK-ENDF 281 (291)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHH
T ss_pred cCCCHHHHHHHHHHHHHhCCCChHHHHHHHH-HHHH
Confidence 999986 578999999999999988877776 5555
No 54
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.49 E-value=4.8e-13 Score=126.91 Aligned_cols=141 Identities=16% Similarity=0.074 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
...++.+|..+...|++++|+..|++++ +| ++.+++.+|.+|...|++++|+++|+++++. +|++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~~------ 71 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINR-----DKHLA------ 71 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccch------
Confidence 4467899999999999999999999996 44 7899999999999999999999999999985 55543
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCc---------hhhhhhHHHHHH
Q 008246 449 IVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPK---------SKAHYYDGLVVL 519 (572)
Q Consensus 449 ~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~---------~~~~~~~al~~L 519 (572)
.++.++|.++...| ++++|++.|++++++ .|.++. .......++.++
T Consensus 72 -~~~~~lg~~~~~~~----------------------~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (213)
T 1hh8_A 72 -VAYFQRGMLYYQTE----------------------KYDLAIKDLKEALIQ-LRGNQLIDYKILGLQFKLFACEVLYNI 127 (213)
T ss_dssp -HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHT-TTTCSEEECGGGTBCCEEEHHHHHHHH
T ss_pred -HHHHHHHHHHHHcc----------------------cHHHHHHHHHHHHHh-CCCccHHHHHHhccccCccchHHHHHH
Confidence 46788999999999 999999999999994 232220 001223677889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008246 520 ASALCNVGRNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 520 g~~l~~~g~~eeA~~~l~~aL~l~P~~~ 547 (572)
|.++...|++++|.++|+++++.+|+..
T Consensus 128 ~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 128 AFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 9999999999999999999999999753
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.49 E-value=3.2e-13 Score=129.96 Aligned_cols=172 Identities=13% Similarity=0.077 Sum_probs=120.5
Q ss_pred cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008246 364 VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (572)
Q Consensus 364 ~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~ 443 (572)
.....+..++.+|..+...|++++|+.+|+++++.+|++..+++.+|.++...|++++|+++|+++++. +|.+.
T Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~- 91 (243)
T 2q7f_A 18 GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL-----DSSAA- 91 (243)
T ss_dssp ------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-
T ss_pred CchhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCcch-
Confidence 344567889999999999999999999999999999999999999999999999999999999999985 55442
Q ss_pred hhhHHHHHHHHHHHHHHHhhchhh-----HHHHHhh-------hhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhh
Q 008246 444 AIDLLIVASQWSGVACIRQAAHNF-----FELVQQG-------QLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAH 511 (572)
Q Consensus 444 ~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~~-------~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~ 511 (572)
.++..+|.++...|+.+. .++.+.. ...+.++...|++++|++.++++++ .+|.+.
T Consensus 92 ------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~-- 159 (243)
T 2q7f_A 92 ------TAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE----LNENDT-- 159 (243)
T ss_dssp ------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH----HCTTCH--
T ss_pred ------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCccH--
Confidence 457888999999985442 1222222 1234568889999999999999998 344432
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 512 YYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 512 ~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
.++..+|.++...|++++|+++++++++.+|++...+..+..
T Consensus 160 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 201 (243)
T 2q7f_A 160 --EARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGV 201 (243)
T ss_dssp --HHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 466789999999999999999999999999998876665554
No 56
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.47 E-value=1e-12 Score=133.07 Aligned_cols=145 Identities=16% Similarity=0.109 Sum_probs=113.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
+|.++..++.+|..+...|++++|++.|++ |++.+++..+|.+|.+.|++++|++.|+++++. +|++.
T Consensus 97 ~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-----~p~~~-- 164 (291)
T 3mkr_A 97 DVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-----DEDAT-- 164 (291)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH--
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CcCcH--
Confidence 566788888888988888999999888887 888889999999999999999999999888875 45432
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHH
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 524 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~ 524 (572)
...++.++.... ...|++++|+..|+++++ .+|.+. .++..+|.++.
T Consensus 165 -------~~~l~~a~~~l~------------------~~~~~~~eA~~~~~~~l~----~~p~~~----~~~~~la~~~~ 211 (291)
T 3mkr_A 165 -------LTQLATAWVSLA------------------AGGEKLQDAYYIFQEMAD----KCSPTL----LLLNGQAACHM 211 (291)
T ss_dssp -------HHHHHHHHHHHH------------------HCTTHHHHHHHHHHHHHH----HSCCCH----HHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHH------------------hCchHHHHHHHHHHHHHH----hCCCcH----HHHHHHHHHHH
Confidence 112222222111 113499999999999999 345433 56778999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHhcc
Q 008246 525 NVGRNAEAEKYLRLAAAHNPQYNELLEQLE 554 (572)
Q Consensus 525 ~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~ 554 (572)
+.|++++|++.|+++++.+|++.+.+.++.
T Consensus 212 ~~g~~~eA~~~l~~al~~~p~~~~~l~~l~ 241 (291)
T 3mkr_A 212 AQGRWEAAEGVLQEALDKDSGHPETLINLV 241 (291)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999988766554
No 57
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.47 E-value=7.8e-13 Score=142.91 Aligned_cols=175 Identities=17% Similarity=0.172 Sum_probs=143.5
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
..++..+|.++..++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+++|+++++. +
T Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~ 374 (537)
T 3fp2_A 300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK-----F 374 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred HHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C
Confidence 46777888899999999999999999999999999999999999999999999999999999999999999986 6
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhh-----HHHHHhhhh-------------hHhhhhhh----------ccHHHH
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNF-----FELVQQGQL-------------KLLSFVSQ----------EKWEEG 490 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~~~~-------------~~~~~~~~----------g~~~eA 490 (572)
|++. .++..+|.++...|+.+. .+++...+. .+.++... |++++|
T Consensus 375 ~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 375 PTLP-------EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp TTCT-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred CCCh-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence 6653 357788999999995442 222222211 12456666 999999
Q ss_pred HHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 008246 491 IAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 553 (572)
Q Consensus 491 i~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l 553 (572)
+..|+++++ .+|.+. .++..+|.++...|++++|.++|+++++++|+..+.....
T Consensus 448 ~~~~~~a~~----~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 502 (537)
T 3fp2_A 448 IKLLTKACE----LDPRSE----QAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502 (537)
T ss_dssp HHHHHHHHH----HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHH
T ss_pred HHHHHHHHH----hCCCCH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 999999999 455443 5677899999999999999999999999999988765533
No 58
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.47 E-value=5.6e-14 Score=130.64 Aligned_cols=134 Identities=17% Similarity=0.130 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~ 449 (572)
+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++. +| ++ .
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p-~~-~----- 74 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE-----YQ-DN-S----- 74 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-----GC-CH-H-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-----cC-Ch-H-----
Confidence 457899999999999999999999999999999999999999999999999999999999874 45 43 1
Q ss_pred HHHHHHHHHH-HHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCC
Q 008246 450 VASQWSGVAC-IRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 528 (572)
Q Consensus 450 ~a~~~lG~~~-~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~ 528 (572)
.+...+.+. ...+ +..+|++.|+++++ .+|++. .++..+|.++...|+
T Consensus 75 -~~~~~~~~~~~~~~----------------------~~~~a~~~~~~al~----~~P~~~----~~~~~la~~~~~~g~ 123 (176)
T 2r5s_A 75 -YKSLIAKLELHQQA----------------------AESPELKRLEQELA----ANPDNF----ELACELAVQYNQVGR 123 (176)
T ss_dssp -HHHHHHHHHHHHHH----------------------TSCHHHHHHHHHHH----HSTTCH----HHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHhhc----------------------ccchHHHHHHHHHH----hCCCCH----HHHHHHHHHHHHccc
Confidence 112223221 1222 33456777888877 344432 455668888888888
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 008246 529 NAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 529 ~eeA~~~l~~aL~l~P~~ 546 (572)
+++|+++|+++++.+|++
T Consensus 124 ~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 124 DEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhCccc
Confidence 888888888888888765
No 59
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.47 E-value=1.2e-12 Score=138.29 Aligned_cols=183 Identities=18% Similarity=0.095 Sum_probs=147.1
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008246 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P 439 (572)
.++..+|.++..+..+|..+...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|+.+|++++.. +|
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p 242 (450)
T 2y4t_A 168 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-----DQ 242 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT
T ss_pred HHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC
Confidence 4556677788999999999999999999999999999999999999999999999999999999999999986 66
Q ss_pred CChhhhhHH-----HHHHHHHHHHHHHhhchhh-----HHHHHh-----------hhhhHhhhhhhccHHHHHHHHHHHh
Q 008246 440 TEPEAIDLL-----IVASQWSGVACIRQAAHNF-----FELVQQ-----------GQLKLLSFVSQEKWEEGIAHLERIG 498 (572)
Q Consensus 440 ~~~~~~~~~-----~~a~~~lG~~~~~~g~~~~-----~~a~~~-----------~~~~~~~~~~~g~~~eAi~~l~kal 498 (572)
++....... ......+|.++...|+.+. .++... ....+.++...|++++|++.+++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 654211110 0012334888888885442 122221 1223456888999999999999999
Q ss_pred cCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 499 NLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 499 ~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
+ .+|.+. .++..+|.++...|++++|+.+|+++++++|++......+..
T Consensus 323 ~----~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 323 Q----MEPDNV----NALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371 (450)
T ss_dssp H----HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred H----hCcccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 9 577654 567789999999999999999999999999999988887774
No 60
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.47 E-value=1.2e-12 Score=138.25 Aligned_cols=155 Identities=18% Similarity=0.136 Sum_probs=125.5
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
...+..+|.+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++. +
T Consensus 16 ~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~ 90 (450)
T 2y4t_A 16 ENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL-----K 90 (450)
T ss_dssp -------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred cccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----C
Confidence 45778888899999999999999999999999999999999999999999999999999999999999999985 5
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchh---hhhhH-
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSK---AHYYD- 514 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~---~~~~~- 514 (572)
|++. .++..+|.++...| ++++|++.|+++++ .+|.+. ..+..
T Consensus 91 p~~~-------~~~~~l~~~~~~~g----------------------~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l 137 (450)
T 2y4t_A 91 MDFT-------AARLQRGHLLLKQG----------------------KLDEAEDDFKKVLK----SNPSENEEKEAQSQL 137 (450)
T ss_dssp TTCH-------HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHT----SCCCHHHHHHHHHHH
T ss_pred CCcH-------HHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHh----cCCCChhhHHHHHHH
Confidence 5542 46788999999999 99999999999999 455543 22211
Q ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008246 515 -------GLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 551 (572)
Q Consensus 515 -------al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~ 551 (572)
.+..+|.++...|++++|+++|+++++.+|++...+.
T Consensus 138 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 138 IKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 1344577788888888888888888888888765443
No 61
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.46 E-value=3.5e-13 Score=136.06 Aligned_cols=148 Identities=11% Similarity=0.053 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhhcCCCCC
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQK-GLLEEAVEYLECAISKLFLAGHPTE 441 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~------~~a~~~LG~l~~~~-g~~~eA~~~~~rAl~~l~~~~~P~~ 441 (572)
+..+..+|..+...|++++|+.+|++|++++|+. +.++..+|.+|... |++++|+++|++|+++ .|.+
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~-----~~~~ 151 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW-----YAQD 151 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----HHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH-----HHhC
Confidence 5688999999999999999999999999998865 67899999999996 9999999999999986 2322
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhh---hhHHHHH
Q 008246 442 PEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAH---YYDGLVV 518 (572)
Q Consensus 442 ~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~---~~~al~~ 518 (572)
. .......++.++|.++.++| ++++|+++|++++++ +|.+... ....+..
T Consensus 152 ~-~~~~~~~~~~~lg~~~~~~g----------------------~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 152 Q-SVALSNKCFIKCADLKALDG----------------------QYIEASDIYSKLIKS----SMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp T-CHHHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHT----TSSCTTTGGGHHHHHHH
T ss_pred C-ChHHHHHHHHHHHHHHHHhC----------------------CHHHHHHHHHHHHHH----HhcCCcccHHHHHHHHH
Confidence 1 11122346788899999888 999999999999993 3333221 1235678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 519 LASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 519 Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
+|.++..+|++++|+.+|+++++++|++..
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 999999999999999999999999998754
No 62
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.45 E-value=1.7e-12 Score=117.28 Aligned_cols=135 Identities=13% Similarity=0.025 Sum_probs=115.4
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~ 447 (572)
.++.++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+++|+++++. +|.+.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~----- 81 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKYI----- 81 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccH-----
Confidence 36788999999999999999999999999999999999999999999999999999999999986 55543
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcC
Q 008246 448 LIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG 527 (572)
Q Consensus 448 ~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g 527 (572)
.+++.+|.++...| ++++|+++|+++++ .+|.+...+ ....++..+...|
T Consensus 82 --~~~~~~a~~~~~~~----------------------~~~~A~~~~~~a~~----~~p~~~~~~--~~~~~~~~~~~~~ 131 (166)
T 1a17_A 82 --KGYYRRAASNMALG----------------------KFRAALRDYETVVK----VKPHDKDAK--MKYQECNKIVKQK 131 (166)
T ss_dssp --HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH----HSTTCHHHH--HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHH----hCCCCHHHH--HHHHHHHHHHHHH
Confidence 46788999999999 99999999999999 345443222 2244566688899
Q ss_pred CHHHHHHHHHHHHHh
Q 008246 528 RNAEAEKYLRLAAAH 542 (572)
Q Consensus 528 ~~eeA~~~l~~aL~l 542 (572)
++++|+++++++...
T Consensus 132 ~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 132 AFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccchHHH
Confidence 999999999987654
No 63
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.44 E-value=2.6e-12 Score=128.87 Aligned_cols=180 Identities=13% Similarity=0.074 Sum_probs=120.4
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
..++..+|.++..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+++|+++++. +
T Consensus 45 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~ 119 (327)
T 3cv0_A 45 EAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS-----Q 119 (327)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----S
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C
Confidence 45566677788999999999999999999999999999999999999999999999999999999999999974 5
Q ss_pred CCChhhhhHH------HHHHHHH-HH-HHHHhhchh-----hHHHHHh-------hhhhHhhhhhhccHHHHHHHHHHHh
Q 008246 439 PTEPEAIDLL------IVASQWS-GV-ACIRQAAHN-----FFELVQQ-------GQLKLLSFVSQEKWEEGIAHLERIG 498 (572)
Q Consensus 439 P~~~~~~~~~------~~a~~~l-G~-~~~~~g~~~-----~~~a~~~-------~~~~~~~~~~~g~~~eAi~~l~kal 498 (572)
|.+....... .....++ |. ++...|+.+ +.++... ....+.++...|++++|++.+++++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 199 (327)
T 3cv0_A 120 PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAV 199 (327)
T ss_dssp TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5443111000 0000001 22 233333211 1111111 1123345667777888888888877
Q ss_pred cCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008246 499 NLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 551 (572)
Q Consensus 499 ~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~ 551 (572)
+ .+|.+. .++..+|.++...|++++|+++|+++++.+|++...+.
T Consensus 200 ~----~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 244 (327)
T 3cv0_A 200 E----LRPDDA----QLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMY 244 (327)
T ss_dssp H----HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred H----hCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 7 334322 45566777788888888888888888887777665443
No 64
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.44 E-value=1.7e-12 Score=112.61 Aligned_cols=125 Identities=10% Similarity=0.018 Sum_probs=109.0
Q ss_pred cccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008246 362 ISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (572)
Q Consensus 362 i~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~ 441 (572)
....+.++..++.+|..+...|++++|+.+|+++++.+|++..+++.+|.++...|++++|+++|+++++. +|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~ 83 (133)
T 2lni_A 9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-----EPTF 83 (133)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-----CTTC
T ss_pred CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCc
Confidence 34556678999999999999999999999999999999999999999999999999999999999999985 5554
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHH
Q 008246 442 PEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAS 521 (572)
Q Consensus 442 ~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~ 521 (572)
. .+++.+|.++.+.| ++++|++.|+++++ .+|.+. .++..++.
T Consensus 84 ~-------~~~~~la~~~~~~~----------------------~~~~A~~~~~~~~~----~~p~~~----~~~~~l~~ 126 (133)
T 2lni_A 84 I-------KGYTRKAAALEAMK----------------------DYTKAMDVYQKALD----LDSSCK----EAADGYQR 126 (133)
T ss_dssp H-------HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH----HCGGGT----HHHHHHHH
T ss_pred h-------HHHHHHHHHHHHHh----------------------hHHHHHHHHHHHHH----hCCCch----HHHHHHHH
Confidence 3 46788999999999 99999999999999 455433 45667899
Q ss_pred HHHHcCC
Q 008246 522 ALCNVGR 528 (572)
Q Consensus 522 ~l~~~g~ 528 (572)
++..+|+
T Consensus 127 ~~~~~~~ 133 (133)
T 2lni_A 127 CMMAQYN 133 (133)
T ss_dssp HHHHHTC
T ss_pred HHHHhcC
Confidence 9888774
No 65
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.44 E-value=4.3e-12 Score=127.27 Aligned_cols=164 Identities=14% Similarity=0.073 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
.+.++.+|..+...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+++|+++++. +|.+.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~------ 89 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDI------ 89 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CcCCH------
Confidence 4568999999999999999999999999999999999999999999999999999999999985 55543
Q ss_pred HHHHHHHHHHHHHhhchhh-----HHHHHhhhh-------h--------------Hh-hhhhhccHHHHHHHHHHHhcCC
Q 008246 449 IVASQWSGVACIRQAAHNF-----FELVQQGQL-------K--------------LL-SFVSQEKWEEGIAHLERIGNLK 501 (572)
Q Consensus 449 ~~a~~~lG~~~~~~g~~~~-----~~a~~~~~~-------~--------------~~-~~~~~g~~~eAi~~l~kal~l~ 501 (572)
.++..+|.++...|+.+. .++....+. . .. ++...|++++|++.++++++
T Consensus 90 -~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-- 166 (327)
T 3cv0_A 90 -AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE-- 166 (327)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH--
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh--
Confidence 457888999999985442 112221111 0 22 47788999999999999999
Q ss_pred CCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 008246 502 EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 552 (572)
Q Consensus 502 ~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~ 552 (572)
.+|.+. .++..+|.++...|++++|+++++++++.+|++...+..
T Consensus 167 --~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 211 (327)
T 3cv0_A 167 --MNPNDA----QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK 211 (327)
T ss_dssp --HSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred --hCCCCH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 344432 567789999999999999999999999999998765443
No 66
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.44 E-value=4.7e-13 Score=118.08 Aligned_cols=104 Identities=16% Similarity=0.128 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
+.++.++|..+..+|++++|+.+|++|++++|+++.+|.++|.+|...|++++|+++|++|+++ +|+........
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~ 82 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV-----GRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh-----CcccchhhHHH
Confidence 5577899999999999999999999999999999999999999999999999999999999986 44433222333
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 449 IVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 449 ~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
..++..+|.++..+| ++++|++.|+++++
T Consensus 83 a~~~~~lg~~~~~~~----------------------~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQN----------------------DLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHh
Confidence 456777888888888 99999999999998
No 67
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.44 E-value=5e-13 Score=138.17 Aligned_cols=142 Identities=11% Similarity=0.093 Sum_probs=124.3
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHH
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---------------INALILMGQTQLQKGLLEEAV 423 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~---------------~~a~~~LG~l~~~~g~~~eA~ 423 (572)
..++..++.++..+..+|..+...|++++|+.+|++|++.+|++ ..+++++|.+|...|++++|+
T Consensus 137 ~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~ 216 (336)
T 1p5q_A 137 EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAI 216 (336)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34555667778899999999999999999999999999999999 799999999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCC
Q 008246 424 EYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEP 503 (572)
Q Consensus 424 ~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p 503 (572)
.+|++|+++ +|++. .+++++|.++..+| ++++|+..|+++++
T Consensus 217 ~~~~~al~~-----~p~~~-------~a~~~lg~~~~~~g----------------------~~~~A~~~~~~al~---- 258 (336)
T 1p5q_A 217 ESCNKALEL-----DSNNE-------KGLSRRGEAHLAVN----------------------DFELARADFQKVLQ---- 258 (336)
T ss_dssp HHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH----
T ss_pred HHHHHHHHh-----CCCcH-------HHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHH----
Confidence 999999986 66653 46889999999999 99999999999999
Q ss_pred CCCchhhhhhHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 008246 504 EEPKSKAHYYDGLVVLASALCNVGRNAEA-EKYLRLAAAH 542 (572)
Q Consensus 504 ~dp~~~~~~~~al~~Lg~~l~~~g~~eeA-~~~l~~aL~l 542 (572)
.+|.+. .++..+|.++...|++++| .+.|++++..
T Consensus 259 l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 259 LYPNNK----AAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HCSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456543 4667899999999999999 5677877654
No 68
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.44 E-value=2.3e-12 Score=141.55 Aligned_cols=179 Identities=9% Similarity=0.031 Sum_probs=144.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008246 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (572)
Q Consensus 361 ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~ 440 (572)
.+..+|.++..+..+|..+...|++++|+++|+++++.+|++..+|..+|.+|.+.|++++|+++|+++++. .|.
T Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~ 439 (597)
T 2xpi_A 365 LVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL-----FQG 439 (597)
T ss_dssp HHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TTT
T ss_pred HHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Ccc
Confidence 445567788999999999999999999999999999999999999999999999999999999999999975 554
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhchhh-----HHHHHh-------hhhhHhhhhhhccHHHHHHHHHHHhcCCC--CCCC
Q 008246 441 EPEAIDLLIVASQWSGVACIRQAAHNF-----FELVQQ-------GQLKLLSFVSQEKWEEGIAHLERIGNLKE--PEEP 506 (572)
Q Consensus 441 ~~~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~-------~~~~~~~~~~~g~~~eAi~~l~kal~l~~--p~dp 506 (572)
+. .++..+|.++.+.|+.+. .++.+. ....+.++...|++++|++.|++++++.. +.+|
T Consensus 440 ~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p 512 (597)
T 2xpi_A 440 TH-------LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512 (597)
T ss_dssp CS-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS
T ss_pred ch-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch
Confidence 42 357788999999995442 122221 11245568889999999999999998310 1244
Q ss_pred chhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhcc
Q 008246 507 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 554 (572)
Q Consensus 507 ~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~ 554 (572)
.+ +..++..+|.++...|++++|+++|+++++.+|++...+..+.
T Consensus 513 ~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 557 (597)
T 2xpi_A 513 KP---WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIA 557 (597)
T ss_dssp GG---GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred hh---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 32 2457788999999999999999999999999999876555443
No 69
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.44 E-value=2.9e-13 Score=124.21 Aligned_cols=124 Identities=16% Similarity=0.072 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh-----hhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhh
Q 008246 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE-----AIDLLIVASQWSGVACIRQAAHNFFELVQQGQL 476 (572)
Q Consensus 402 ~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~-----~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~ 476 (572)
.+..+...|..++..|++++|+++|++|+++ +|+++. ..+....+|.++|.++.++|
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l-----~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg------------- 71 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEI-----SHTMPPEEAFDHAGFDAFCHAGLAEALAGLR------------- 71 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCCcchhhhhhccchHHHHHHHHHHHHHCC-------------
Confidence 3556677777777777777777777777775 444210 11112347899999999999
Q ss_pred hHhhhhhhccHHHHHHHHHHHhcCCCCC-------CCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008246 477 KLLSFVSQEKWEEGIAHLERIGNLKEPE-------EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 549 (572)
Q Consensus 477 ~~~~~~~~g~~~eAi~~l~kal~l~~p~-------dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~ 549 (572)
+|++|+..|+++++ . +|++...|..+++++|.++..+|+++||+++|+++++++|++...
T Consensus 72 ---------r~~eAl~~~~kAL~----l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 72 ---------SFDEALHSADKALH----YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp ---------CHHHHHHHHHHHHH----HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred ---------CHHHHHHHHHHHHH----hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 99999999999999 5 776655554445899999999999999999999999999998766
Q ss_pred HHhcccc
Q 008246 550 LEQLENN 556 (572)
Q Consensus 550 l~~l~~~ 556 (572)
...++..
T Consensus 139 ~~~~~~~ 145 (159)
T 2hr2_A 139 TPGKERM 145 (159)
T ss_dssp CTTHHHH
T ss_pred HHHHHHH
Confidence 5555553
No 70
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.44 E-value=2.5e-12 Score=137.72 Aligned_cols=176 Identities=13% Similarity=0.096 Sum_probs=146.4
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
..++..+|.++..+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++. +
T Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~ 368 (514)
T 2gw1_A 294 DKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK-----F 368 (514)
T ss_dssp HHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-----S
T ss_pred HHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----c
Confidence 45777888889999999999999999999999999999999999999999999999999999999999999985 5
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhh-----HHHHHh-------------hhhhHhhhhh---hccHHHHHHHHHHH
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNF-----FELVQQ-------------GQLKLLSFVS---QEKWEEGIAHLERI 497 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~-------------~~~~~~~~~~---~g~~~eAi~~l~ka 497 (572)
|.+. .++..+|.++...|+.+. .++... ....+.++.. .|++++|+..|+++
T Consensus 369 ~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 369 PEAP-------EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp TTCS-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred ccCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 5543 357788999999995542 122221 1223456778 99999999999999
Q ss_pred hcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhcc
Q 008246 498 GNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 554 (572)
Q Consensus 498 l~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~ 554 (572)
++ .+|.+. .++..+|.++...|++++|.++|+++++++|++.+.+..+.
T Consensus 442 ~~----~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 442 SK----LDPRSE----QAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HH----HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HH----hCcccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 99 345433 56678999999999999999999999999999887666443
No 71
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.4e-12 Score=113.66 Aligned_cols=98 Identities=14% Similarity=0.140 Sum_probs=91.9
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~ 447 (572)
+++.++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.+|++++++ +|++.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~----- 72 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-----DPNFV----- 72 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcH-----
Confidence 56789999999999999999999999999999999999999999999999999999999999986 66653
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 448 LIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 448 ~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
.+++.+|.++...| ++++|++.|+++++
T Consensus 73 --~~~~~lg~~~~~~~----------------------~~~~A~~~~~~al~ 100 (126)
T 3upv_A 73 --RAYIRKATAQIAVK----------------------EYASALETLDAART 100 (126)
T ss_dssp --HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHh----------------------CHHHHHHHHHHHHH
Confidence 46888999999999 99999999999999
No 72
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.42 E-value=1.4e-12 Score=124.88 Aligned_cols=134 Identities=15% Similarity=0.161 Sum_probs=109.3
Q ss_pred hhccccCCCCHHHHHH----------------HHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 008246 359 QLKISVENLTPKELIA----------------LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEA 422 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~----------------lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA 422 (572)
..++..+|.+++.++. +|..+...|++++|+..|+++++++|+++.+++.+|.++...|++++|
T Consensus 28 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 107 (208)
T 3urz_A 28 RQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDA 107 (208)
T ss_dssp HHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4567777777888888 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhh-------------hhhHhhhhhhccHHH
Q 008246 423 VEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQG-------------QLKLLSFVSQEKWEE 489 (572)
Q Consensus 423 ~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~-------------~~~~~~~~~~g~~~e 489 (572)
+.+|++++++ +|++. .+++++|.++...|..+..++.... -....++...|++++
T Consensus 108 ~~~~~~al~~-----~P~~~-------~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~ 175 (208)
T 3urz_A 108 LRMYEKILQL-----EADNL-------AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEK 175 (208)
T ss_dssp HHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHc-----CCCCH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHH
Confidence 9999999996 77764 4678899998887744432222111 112445677899999
Q ss_pred HHHHHHHHhcCCCCCCCch
Q 008246 490 GIAHLERIGNLKEPEEPKS 508 (572)
Q Consensus 490 Ai~~l~kal~l~~p~dp~~ 508 (572)
|+.+|+++++ .+|+.
T Consensus 176 A~~~~~~al~----l~P~~ 190 (208)
T 3urz_A 176 ARNSLQKVIL----RFPST 190 (208)
T ss_dssp HHHHHHHHTT----TSCCH
T ss_pred HHHHHHHHHH----hCCCH
Confidence 9999999999 56643
No 73
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.42 E-value=3.8e-13 Score=152.35 Aligned_cols=147 Identities=12% Similarity=0.071 Sum_probs=127.3
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 008246 363 SVENLTPKELIALSVKFLSKGDKERPIPLLQLAL--------NKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF 434 (572)
Q Consensus 363 ~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL--------~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~ 434 (572)
..+|.++..++..| ...|++++|++.|++++ +.+|+++++++.+|.+|...|++++|++.|++|++.
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-- 462 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER-- 462 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--
Confidence 45666777777766 78899999999999999 999999999999999999999999999999999986
Q ss_pred hcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhH
Q 008246 435 LAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYD 514 (572)
Q Consensus 435 ~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~ 514 (572)
+|++. .+++++|.++..+| ++++|++.|+++++ .+|++. .
T Consensus 463 ---~p~~~-------~a~~~lg~~~~~~g----------------------~~~~A~~~~~~al~----l~P~~~----~ 502 (681)
T 2pzi_A 463 ---VGWRW-------RLVWYRAVAELLTG----------------------DYDSATKHFTEVLD----TFPGEL----A 502 (681)
T ss_dssp ---HCCCH-------HHHHHHHHHHHHHT----------------------CHHHHHHHHHHHHH----HSTTCS----H
T ss_pred ---CcchH-------HHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHH----hCCCCh----H
Confidence 56553 47889999999999 99999999999999 455432 5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 515 GLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 515 al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
++.++|.++.++|++++ +++|+++++++|++...+.++..
T Consensus 503 ~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 503 PKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp HHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHH
Confidence 67789999999999999 99999999999999876655444
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=2.8e-12 Score=130.24 Aligned_cols=180 Identities=8% Similarity=0.039 Sum_probs=140.6
Q ss_pred hhhhccccCCCCHHHHHHHHHHHHh-------cCCc-------ccHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHH
Q 008246 357 AKQLKISVENLTPKELIALSVKFLS-------KGDK-------ERPIPLLQLALN-KEPDNINALILMGQTQLQKGLLEE 421 (572)
Q Consensus 357 ~~~~ai~~~~~~~~~~~~lA~~~~~-------~g~~-------~~A~~~l~~AL~-~dP~~~~a~~~LG~l~~~~g~~~e 421 (572)
.+++++..+|.+++.++..|..+.. .|++ ++|+..|++|++ ++|++..+|..+|.++...|++++
T Consensus 38 ~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~ 117 (308)
T 2ond_A 38 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 117 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 3567899999999999999999874 5887 899999999999 799999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhh-----HHHHHhhhhh-----Hhhhh---hhccHH
Q 008246 422 AVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNF-----FELVQQGQLK-----LLSFV---SQEKWE 488 (572)
Q Consensus 422 A~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~~~~~-----~~~~~---~~g~~~ 488 (572)
|.+.|++|+++ +|.+.+ .+|..+|..+.+.|+.+. .++++..... ..++. ..|+++
T Consensus 118 A~~~~~~al~~-----~p~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 118 VHSIYNRLLAI-----EDIDPT------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHHHHHHHTS-----SSSCTH------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHH
T ss_pred HHHHHHHHHhc-----cccCcc------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHH
Confidence 99999999974 565531 257888988888884432 2222221111 11222 268999
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-CHHHHHhccc
Q 008246 489 EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH---NPQ-YNELLEQLEN 555 (572)
Q Consensus 489 eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l---~P~-~~~~l~~l~~ 555 (572)
+|++.|+++++ .+|++. .++..+|..+...|++++|+.+|+++++. +|+ ...++..+..
T Consensus 187 ~A~~~~~~al~----~~p~~~----~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~ 249 (308)
T 2ond_A 187 VAFKIFELGLK----KYGDIP----EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 249 (308)
T ss_dssp HHHHHHHHHHH----HHTTCH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHH----hCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 99999999998 345433 56677999999999999999999999995 554 6677777666
No 75
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.42 E-value=3.1e-13 Score=136.04 Aligned_cols=152 Identities=13% Similarity=0.057 Sum_probs=118.8
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh
Q 008246 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI 445 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~ 445 (572)
|.+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|+..|++|+++ +|++.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~--- 72 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQSV--- 72 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----CTTCH---
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCH---
Confidence 3467899999999999999999999999999999999999999999999999999999999999975 66553
Q ss_pred hHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhh--------------
Q 008246 446 DLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAH-------------- 511 (572)
Q Consensus 446 ~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~-------------- 511 (572)
.+++.+|.++..+| ++++|+..|++++++ +|.++.....
T Consensus 73 ----~~~~~lg~~~~~~g----------------------~~~~A~~~~~~al~l-~p~~~~~~~~~~~~~~~~~~~~~~ 125 (281)
T 2c2l_A 73 ----KAHFFLGQCQLEME----------------------SYDEAIANLQRAYSL-AKEQRLNFGDDIPSALRIAKKKRW 125 (281)
T ss_dssp ----HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHH-HHHTTCCCCSHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHh-CccchhhHHHHHHHHHHHHHHHHH
Confidence 46788999999999 888888888888773 1222110000
Q ss_pred ----------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhcc
Q 008246 512 ----------YYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLE 554 (572)
Q Consensus 512 ----------~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~ 554 (572)
.......++..+ .|++++|++.|+++++.+|++......+.
T Consensus 126 ~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 176 (281)
T 2c2l_A 126 NSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQA 176 (281)
T ss_dssp HHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHH
Confidence 001122334433 68999999999999999998765544443
No 76
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.41 E-value=9.4e-12 Score=134.39 Aligned_cols=163 Identities=12% Similarity=0.071 Sum_probs=125.6
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~ 447 (572)
.++.++.+|..+...|++++|+.+|+++++.+|+++.+++.+|.+|...|++++|+++|+++++. +|++.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~----- 93 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI-----KPDHS----- 93 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCchH-----
Confidence 46788999999999999999999999999999999999999999999999999999999999986 66653
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHhhhh---------------------------------------------------
Q 008246 448 LIVASQWSGVACIRQAAHNFFELVQQGQL--------------------------------------------------- 476 (572)
Q Consensus 448 ~~~a~~~lG~~~~~~g~~~~~~a~~~~~~--------------------------------------------------- 476 (572)
.++..+|.++...|+.+ ++......
T Consensus 94 --~~~~~la~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 169 (537)
T 3fp2_A 94 --KALLRRASANESLGNFT--DAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS 169 (537)
T ss_dssp --HHHHHHHHHHHHHTCHH--HHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHH--HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH
Confidence 46788899999998544 22111000
Q ss_pred --------------------------hH------------hhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHH
Q 008246 477 --------------------------KL------------LSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV 518 (572)
Q Consensus 477 --------------------------~~------------~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~ 518 (572)
.. ......|++++|+..|+++++. .|.++........++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 170 FFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA-NTVDDPLRENAALALCY 248 (537)
T ss_dssp HHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-CCCcchhhHHHHHHHHH
Confidence 00 0011235899999999999992 33333222223456778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008246 519 LASALCNVGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 519 Lg~~l~~~g~~eeA~~~l~~aL~l~P~ 545 (572)
+|.++...|++++|+++|+++++.+|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~~~~ 275 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINLHPT 275 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999998
No 77
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.40 E-value=1e-12 Score=122.02 Aligned_cols=142 Identities=14% Similarity=0.011 Sum_probs=120.8
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhhhcC
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQL-QKGLLEEAVEYLECAISKLFLAG 437 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~-~~g~~~eA~~~~~rAl~~l~~~~ 437 (572)
.+++..+|.+++.++.+|..+...|++++|+..|+++++.+| ++..+..+|.+.. ..++..+|+.+|+++++.
T Consensus 30 ~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~----- 103 (176)
T 2r5s_A 30 QTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAA----- 103 (176)
T ss_dssp HTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-----
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHh-----
Confidence 578889999999999999999999999999999999999999 9888887776643 444556789999999986
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHH
Q 008246 438 HPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLV 517 (572)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~ 517 (572)
+|+++ .+++.+|.++...| ++++|++.|+++++ .+|... ...++.
T Consensus 104 ~P~~~-------~~~~~la~~~~~~g----------------------~~~~A~~~~~~~l~----~~p~~~--~~~a~~ 148 (176)
T 2r5s_A 104 NPDNF-------ELACELAVQYNQVG----------------------RDEEALELLWNILK----VNLGAQ--DGEVKK 148 (176)
T ss_dssp STTCH-------HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHT----TCTTTT--TTHHHH
T ss_pred CCCCH-------HHHHHHHHHHHHcc----------------------cHHHHHHHHHHHHH----hCcccC--hHHHHH
Confidence 66654 46788999999999 99999999999999 455321 124677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 518 VLASALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 518 ~Lg~~l~~~g~~eeA~~~l~~aL~ 541 (572)
.+|.++...|+.++|..+|++++.
T Consensus 149 ~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 149 TFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHH
Confidence 899999999999999999999875
No 78
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.40 E-value=1.3e-12 Score=115.13 Aligned_cols=112 Identities=13% Similarity=0.066 Sum_probs=93.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHh
Q 008246 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLL 479 (572)
Q Consensus 400 P~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~ 479 (572)
++.+.++..+|..++.+|++++|+++|++|+++ +|++. .++.++|.++.++|
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~~-------~~~~nlg~~~~~~~---------------- 56 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSNI-------TFYNNKAAVYFEEK---------------- 56 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTT----------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHHhHHHHHHHhh----------------
Confidence 345788999999999999999999999999996 67653 46888999999999
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 480 SFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 480 ~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
++++|++.+++++++. |.++........++..+|.++..+|++++|+++|+++++.+|+.
T Consensus 57 ------~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 57 ------KFAECVQFCEKAVEVG-RETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp ------CHHHHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred ------hHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 9999999999999842 22322222334578889999999999999999999999999863
No 79
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.9e-12 Score=112.71 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=100.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHh
Q 008246 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLL 479 (572)
Q Consensus 400 P~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~ 479 (572)
|.+++.+..+|..+...|++++|+++|++++++ +|++. .++.++|.++.+.|
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~~~~~~a~~~~~~~---------------- 52 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDA-------RGYSNRAAALAKLM---------------- 52 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTT----------------
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCh-------HHHHHHHHHHHHhc----------------
Confidence 567889999999999999999999999999986 66653 46888999999999
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHhc
Q 008246 480 SFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN------PQYNELLEQL 553 (572)
Q Consensus 480 ~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~------P~~~~~l~~l 553 (572)
++++|++.|+++++ .+|.+. .++..+|.++...|++++|+++|+++++++ |++...+..+
T Consensus 53 ------~~~~A~~~~~~al~----~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l 118 (126)
T 3upv_A 53 ------SFPEAIADCNKAIE----KDPNFV----RAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 118 (126)
T ss_dssp ------CHHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHH----hCCCcH----HHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHH
Confidence 99999999999999 455543 567789999999999999999999999999 8888877777
Q ss_pred cc
Q 008246 554 EN 555 (572)
Q Consensus 554 ~~ 555 (572)
..
T Consensus 119 ~~ 120 (126)
T 3upv_A 119 YK 120 (126)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 80
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.40 E-value=1.9e-12 Score=118.44 Aligned_cols=102 Identities=20% Similarity=0.116 Sum_probs=94.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
++.+++.++.+|..+...|++++|+.+|+++++.+|+++.+|+.+|.+|...|++++|+.+|++|+++ +|++.
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~-- 79 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV-----DPKYS-- 79 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH--
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCH--
Confidence 44568899999999999999999999999999999999999999999999999999999999999986 66653
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcC
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNL 500 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l 500 (572)
.+++++|.++..+| ++++|+++|++++++
T Consensus 80 -----~~~~~lg~~~~~~g----------------------~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 80 -----KAWSRLGLARFDMA----------------------DYKGAKEAYEKGIEA 108 (164)
T ss_dssp -----HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHcc----------------------CHHHHHHHHHHHHHh
Confidence 46888999999999 999999999999993
No 81
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.39 E-value=3.3e-12 Score=111.70 Aligned_cols=95 Identities=16% Similarity=0.090 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~ 450 (572)
.++.+|..+.+.|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.+|++|+++ +|++. .
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~-------~ 86 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML-----DPKDI-------A 86 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------H
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------H
Confidence 47899999999999999999999999999999999999999999999999999999999986 67664 4
Q ss_pred HHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 451 ASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 451 a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
+++.+|.++...| ++++|++.|+++++
T Consensus 87 ~~~~la~~~~~~g----------------------~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 87 VHAALAVSHTNEH----------------------NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHH----------------------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC----------------------CHHHHHHHHHHHHH
Confidence 6788999999999 99999999999999
No 82
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.38 E-value=3.7e-12 Score=109.54 Aligned_cols=125 Identities=17% Similarity=0.093 Sum_probs=108.4
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 363 SVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 363 ~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
..++.++..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++++++++. +|++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~ 80 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI-----DPAYS 80 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-----CccCH
Confidence 3445567899999999999999999999999999999999999999999999999999999999999985 55543
Q ss_pred hhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHH
Q 008246 443 EAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA 522 (572)
Q Consensus 443 ~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~ 522 (572)
.++..+|.++...| ++++|+..|+++++ .+|.+. .++..+|.+
T Consensus 81 -------~~~~~~~~~~~~~~----------------------~~~~A~~~~~~~~~----~~p~~~----~~~~~l~~~ 123 (131)
T 2vyi_A 81 -------KAYGRMGLALSSLN----------------------KHVEAVAYYKKALE----LDPDNE----TYKSNLKIA 123 (131)
T ss_dssp -------HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH----HSTTCH----HHHHHHHHH
T ss_pred -------HHHHHHHHHHHHhC----------------------CHHHHHHHHHHHHh----cCccch----HHHHHHHHH
Confidence 45788899999999 99999999999999 345433 456779999
Q ss_pred HHHcCCH
Q 008246 523 LCNVGRN 529 (572)
Q Consensus 523 l~~~g~~ 529 (572)
+...|++
T Consensus 124 ~~~~~~~ 130 (131)
T 2vyi_A 124 ELKLREA 130 (131)
T ss_dssp HHHHTTC
T ss_pred HHHHhcC
Confidence 9998876
No 83
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.38 E-value=8.3e-13 Score=136.52 Aligned_cols=140 Identities=12% Similarity=0.078 Sum_probs=118.5
Q ss_pred hcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh--------hhhhHHHHHH
Q 008246 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP--------EAIDLLIVAS 452 (572)
Q Consensus 381 ~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~--------~~~~~~~~a~ 452 (572)
..+++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++|+++ +|++. +..+....++
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-----~p~~~~~~~~~~~~~~~~~~~~~ 199 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW-----LEYESSFSNEEAQKAQALRLASH 199 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----TTTCCCCCSHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----hhccccCChHHHHHHHHHHHHHH
Confidence 3578889999999999999999999999999999999999999999999986 55542 0111123578
Q ss_pred HHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHH
Q 008246 453 QWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEA 532 (572)
Q Consensus 453 ~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA 532 (572)
.++|.++.++| ++++|+..|+++++ .+|.+. .++..+|.+|..+|++++|
T Consensus 200 ~nla~~~~~~g----------------------~~~~A~~~~~~al~----~~p~~~----~a~~~lg~~~~~~g~~~~A 249 (336)
T 1p5q_A 200 LNLAMCHLKLQ----------------------AFSAAIESCNKALE----LDSNNE----KGLSRRGEAHLAVNDFELA 249 (336)
T ss_dssp HHHHHHHHHTT----------------------CHHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcC----------------------CHHHHHHHHHHHHH----hCCCcH----HHHHHHHHHHHHCCCHHHH
Confidence 88899999998 99999999999999 455543 5677899999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHhccc
Q 008246 533 EKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 533 ~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
+++|+++++++|++...+..+..
T Consensus 250 ~~~~~~al~l~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 250 RADFQKVLQLYPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHH
Confidence 99999999999999876665554
No 84
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.38 E-value=2.7e-12 Score=141.59 Aligned_cols=131 Identities=20% Similarity=0.241 Sum_probs=98.1
Q ss_pred cCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH
Q 008246 382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR 461 (572)
Q Consensus 382 ~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~ 461 (572)
.|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+++|++|+++ +|++. .++.++|.++..
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~lg~~~~~ 69 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-----HPGHP-------EAVARLGRVRWT 69 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----STTCH-------HHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999975 56553 467889999999
Q ss_pred hhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 462 QAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 462 ~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~ 541 (572)
+| ++++|+++|+++++ .+|++. .++.++|.+|...|++++|+++|+++++
T Consensus 70 ~g----------------------~~~~A~~~~~~al~----~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 119 (568)
T 2vsy_A 70 QQ----------------------RHAEAAVLLQQASD----AAPEHP----GIALWLGHALEDAGQAEAAAAAYTRAHQ 119 (568)
T ss_dssp TT----------------------CHHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC----------------------CHHHHHHHHHHHHh----cCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99 99999999999999 455443 5677899999999999999999999999
Q ss_pred hCCCCHHHHHhcc
Q 008246 542 HNPQYNELLEQLE 554 (572)
Q Consensus 542 l~P~~~~~l~~l~ 554 (572)
.+|++...+..+.
T Consensus 120 ~~p~~~~~~~~l~ 132 (568)
T 2vsy_A 120 LLPEEPYITAQLL 132 (568)
T ss_dssp HCTTCHHHHHHHH
T ss_pred hCCCCHHHHHHHH
Confidence 9999877555443
No 85
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.36 E-value=3.2e-12 Score=113.80 Aligned_cols=147 Identities=13% Similarity=0.038 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI------NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~------~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
...+..+|..+...|++++|+.+++++++..++.. .++..+|.++...|++++|+++|+++++.. +...
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----~~~~ 83 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA-----RQLK 83 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HHhC
Confidence 56789999999999999999999999999876543 589999999999999999999999999852 1111
Q ss_pred hhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHH
Q 008246 443 EAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA 522 (572)
Q Consensus 443 ~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~ 522 (572)
.......++.++|.++...| ++++|++.+++++++.. ...+......++..+|.+
T Consensus 84 -~~~~~~~~~~~l~~~~~~~~----------------------~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~la~~ 138 (164)
T 3ro3_A 84 -DRAVEAQSCYSLGNTYTLLQ----------------------DYEKAIDYHLKHLAIAQ--ELKDRIGEGRACWSLGNA 138 (164)
T ss_dssp -CHHHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHHHHHh----------------------hHHHHHHHHHHHHHHHH--HccchHhHHHHHHHHHHH
Confidence 12223456788899988888 99999999999997421 111122334567889999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Q 008246 523 LCNVGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 523 l~~~g~~eeA~~~l~~aL~l~P~ 545 (572)
+...|++++|.+++++++++...
T Consensus 139 ~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 139 YTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987544
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.35 E-value=4.6e-12 Score=127.79 Aligned_cols=147 Identities=12% Similarity=-0.018 Sum_probs=115.1
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPD------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~------~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
.+...|..+...|++++|+.+|++|+++.+. .+.++..+|.+|...|++++|+.+|++|+++ .+... .
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~~~~g-~ 112 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI-----FTHRG-Q 112 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHTT-C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----HHHcC-C
Confidence 4555677888999999999999999998532 2789999999999999999999999999985 22211 1
Q ss_pred hhHHHHHHHHHHHHHHHh-hchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHH
Q 008246 445 IDLLIVASQWSGVACIRQ-AAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL 523 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~-g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l 523 (572)
......++.++|.++... | ++++|+++|++++++. |.+.. ......++..+|.++
T Consensus 113 ~~~~a~~~~~lg~~~~~~lg----------------------~~~~A~~~~~~Al~~~-~~~~~-~~~~~~~~~~lg~~~ 168 (292)
T 1qqe_A 113 FRRGANFKFELGEILENDLH----------------------DYAKAIDCYELAGEWY-AQDQS-VALSNKCFIKCADLK 168 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----------------------CHHHHHHHHHHHHHHH-HHTTC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc----------------------CHHHHHHHHHHHHHHH-HhCCC-hHHHHHHHHHHHHHH
Confidence 122234677888888885 8 9999999999999842 11111 111235678899999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCH
Q 008246 524 CNVGRNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 524 ~~~g~~eeA~~~l~~aL~l~P~~~ 547 (572)
..+|++++|+++|+++++.+|+..
T Consensus 169 ~~~g~~~~A~~~~~~al~~~~~~~ 192 (292)
T 1qqe_A 169 ALDGQYIEASDIYSKLIKSSMGNR 192 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred HHhCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998753
No 87
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.35 E-value=2.3e-12 Score=129.96 Aligned_cols=144 Identities=10% Similarity=0.049 Sum_probs=128.3
Q ss_pred hhhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008246 358 KQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAG 437 (572)
Q Consensus 358 ~~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~ 437 (572)
+.+++..+|.++++++.+|..+...|++++|+..|+++++.+|++...+...+..+...|+.++|++.|+++++.
T Consensus 140 ~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~----- 214 (287)
T 3qou_A 140 LXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE----- 214 (287)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-----
T ss_pred HHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc-----
Confidence 356888999999999999999999999999999999999999988888888888899999999999999999986
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHH
Q 008246 438 HPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLV 517 (572)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~ 517 (572)
+|++. .+++.+|.++...| ++++|++.|+++++ .+|++. ...++.
T Consensus 215 ~P~~~-------~~~~~la~~l~~~g----------------------~~~~A~~~l~~~l~----~~p~~~--~~~a~~ 259 (287)
T 3qou_A 215 NPEDA-------ALATQLALQLHQVG----------------------RNEEALELLFGHLR----XDLTAA--DGQTRX 259 (287)
T ss_dssp CTTCH-------HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH----HCTTGG--GGHHHH
T ss_pred CCccH-------HHHHHHHHHHHHcc----------------------cHHHHHHHHHHHHh----cccccc--cchHHH
Confidence 67664 46788999999999 99999999999999 456542 135678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 518 VLASALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 518 ~Lg~~l~~~g~~eeA~~~l~~aL~ 541 (572)
.+|.++...|+.++|...|++++.
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHH
Confidence 899999999999999999999986
No 88
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=7.2e-12 Score=127.17 Aligned_cols=173 Identities=10% Similarity=-0.089 Sum_probs=131.1
Q ss_pred hhccc-cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q 008246 359 QLKIS-VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN-ALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436 (572)
Q Consensus 359 ~~ai~-~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~-a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~ 436 (572)
++++. .+|.+...++.+|..+...|++++|+..|+++++.+|+++. +|..+|.++.+.|++++|...|++|++.
T Consensus 88 ~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---- 163 (308)
T 2ond_A 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---- 163 (308)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS----
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----
Confidence 56887 68889999999999999999999999999999999999987 9999999999999999999999999974
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHHH-hhchh-----hHHHHHhhhh-------hHhhhhhhccHHHHHHHHHHHhcCCCC
Q 008246 437 GHPTEPEAIDLLIVASQWSGVACIR-QAAHN-----FFELVQQGQL-------KLLSFVSQEKWEEGIAHLERIGNLKEP 503 (572)
Q Consensus 437 ~~P~~~~~~~~~~~a~~~lG~~~~~-~g~~~-----~~~a~~~~~~-------~~~~~~~~g~~~eAi~~l~kal~l~~p 503 (572)
+|... ..+...+..... .|+.+ +.+++...+. .+..+.+.|++++|+..|+++++.. +
T Consensus 164 -~p~~~-------~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-~ 234 (308)
T 2ond_A 164 -ARTRH-------HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-S 234 (308)
T ss_dssp -TTCCT-------HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-S
T ss_pred -CCCCH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-C
Confidence 44432 122222322221 34322 2223332222 2344667899999999999999831 1
Q ss_pred CCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008246 504 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 504 ~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~ 547 (572)
.+|+. ....+..++..+...|+.++|...++++++.+|+..
T Consensus 235 l~p~~---~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 235 LPPEK---SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCGGG---CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CCHHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 24432 224567789999999999999999999999999854
No 89
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.33 E-value=4.8e-12 Score=127.09 Aligned_cols=151 Identities=15% Similarity=0.108 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
.+..+..|..+...|++++|.+.|+..+..+|++. +++.+|.++.+.|++++|+.+|+++.. .| ++ ...
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~------~~-d~---~~~ 170 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGK------WP-DK---FLA 170 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGG------CS-CH---HHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhc------cC-Cc---ccH
Confidence 45678899999999999999999999999999999 999999999999999999999998775 22 11 112
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCC
Q 008246 449 IVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGR 528 (572)
Q Consensus 449 ~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~ 528 (572)
..+++++|.++..+| ++++|+++|++++. .+.+|. ...++++.+|.++.++|+
T Consensus 171 ~~a~~~LG~al~~LG----------------------~~~eAl~~l~~a~~--g~~~P~---~~~da~~~~glaL~~lGr 223 (282)
T 4f3v_A 171 GAAGVAHGVAAANLA----------------------LFTEAERRLTEAND--SPAGEA---CARAIAWYLAMARRSQGN 223 (282)
T ss_dssp HHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHT--STTTTT---THHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCC----------------------CHHHHHHHHHHHhc--CCCCcc---ccHHHHHHHHHHHHHcCC
Confidence 347899999999999 99999999999986 223353 144678889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHhccccch
Q 008246 529 NAEAEKYLRLAAAHNPQYNELLEQLENNDE 558 (572)
Q Consensus 529 ~eeA~~~l~~aL~l~P~~~~~l~~l~~~~~ 558 (572)
.+||.+.|+++++.+|+ .+....+.+...
T Consensus 224 ~deA~~~l~~a~a~~P~-~~~~~aL~~~~~ 252 (282)
T 4f3v_A 224 ESAAVALLEWLQTTHPE-PKVAAALKDPSY 252 (282)
T ss_dssp HHHHHHHHHHHHHHSCC-HHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCCc-HHHHHHHhCCCC
Confidence 99999999999999999 888887776543
No 90
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.33 E-value=7.2e-12 Score=114.60 Aligned_cols=109 Identities=14% Similarity=0.121 Sum_probs=96.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhh
Q 008246 398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLK 477 (572)
Q Consensus 398 ~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~ 477 (572)
.++.++.+++.+|.++...|++++|+++|++++++ +|++. .+++++|.++.+.|
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~l~~~~~~~g-------------- 59 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI-----APANP-------IYLSNRAAAYSASG-------------- 59 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH-------HHHHHHHHHHHHTT--------------
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCcCH-------HHHHHHHHHHHHcc--------------
Confidence 46778999999999999999999999999999986 66553 46788999999999
Q ss_pred HhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 478 LLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 478 ~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
++++|+.+|+++++ .+|.+. .++..+|.+|..+|++++|+++|+++++++|++..
T Consensus 60 --------~~~~A~~~~~~al~----~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 60 --------QHEKAAEDAELATV----VDPKYS----KAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp --------CHHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred --------CHHHHHHHHHHHHH----hCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 99999999999999 455543 56778999999999999999999999999999865
No 91
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.33 E-value=1e-11 Score=109.01 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=94.1
Q ss_pred cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008246 364 VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (572)
Q Consensus 364 ~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~ 443 (572)
.++.+++.++.+|..+...|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+.+|++++++ +|++.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~- 77 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQSV- 77 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CchhH-
Confidence 456679999999999999999999999999999999999999999999999999999999999999986 56553
Q ss_pred hhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcC
Q 008246 444 AIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNL 500 (572)
Q Consensus 444 ~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l 500 (572)
.+++.+|.++...| ++++|+..|++++++
T Consensus 78 ------~~~~~l~~~~~~~~----------------------~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 78 ------KAHFFLGQCQLEME----------------------SYDEAIANLQRAYSL 106 (137)
T ss_dssp ------HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHh----------------------hHHHHHHHHHHHHHH
Confidence 46788999999999 999999999999983
No 92
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.33 E-value=3.6e-11 Score=111.36 Aligned_cols=135 Identities=12% Similarity=0.092 Sum_probs=107.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhH-----HHHHhh-
Q 008246 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFF-----ELVQQG- 474 (572)
Q Consensus 401 ~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~-----~a~~~~- 474 (572)
+++.+|+.+|.+|..+|++++|+++|++|+++ +|++. .++..+|.++.+.|+.+.. .+....
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~ 70 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA-----DPNNV-------ETLLKLGKTYMDIGLPNDAIESLKKFVVLDT 70 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 57899999999999999999999999999986 77664 4678899999999954421 111111
Q ss_pred ------hhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 475 ------QLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 475 ------~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
...+..+...+++++|++.++++++ .+|.+. .++..+|.++..+|++++|+++|+++++.+|++..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~----~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 142 (184)
T 3vtx_A 71 TSAEAYYILGSANFMIDEKQAAIDALQRAIA----LNTVYA----DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIR 142 (184)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCccch----HHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhh
Confidence 1234567788999999999999999 455433 56678999999999999999999999999999987
Q ss_pred HHHhccc
Q 008246 549 LLEQLEN 555 (572)
Q Consensus 549 ~l~~l~~ 555 (572)
.+..+..
T Consensus 143 ~~~~lg~ 149 (184)
T 3vtx_A 143 AYQSIGL 149 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
No 93
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.33 E-value=3.2e-11 Score=119.29 Aligned_cols=154 Identities=14% Similarity=0.082 Sum_probs=122.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhcCCCC
Q 008246 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHPT 440 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~----~g~~~eA~~~~~rAl~~l~~~~~P~ 440 (572)
++.++++++.+|..+...|++++|+.+|+++++ |+++.+++.+|.+|.. .|++++|+++|++|++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------- 71 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-------- 71 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--------
Confidence 456789999999999999999999999999999 8899999999999999 99999999999999973
Q ss_pred ChhhhhHHHHHHHHHHHHHHH----hhchhh-----HHHHHhh-----hhhHhhhhh----hccHHHHHHHHHHHhcCCC
Q 008246 441 EPEAIDLLIVASQWSGVACIR----QAAHNF-----FELVQQG-----QLKLLSFVS----QEKWEEGIAHLERIGNLKE 502 (572)
Q Consensus 441 ~~~~~~~~~~a~~~lG~~~~~----~g~~~~-----~~a~~~~-----~~~~~~~~~----~g~~~eAi~~l~kal~l~~ 502 (572)
. + ..+++.+|.++.. .++.+. .++++.+ ...+.++.. .+++++|+++|++++++
T Consensus 72 ---~-~--~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-- 143 (273)
T 1ouv_A 72 ---N-Y--SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-- 143 (273)
T ss_dssp ---T-C--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--
T ss_pred ---C-C--HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc--
Confidence 1 1 2467889999988 663331 2222221 113345667 89999999999999983
Q ss_pred CCCCchhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 008246 503 PEEPKSKAHYYDGLVVLASALCN----VGRNAEAEKYLRLAAAHNP 544 (572)
Q Consensus 503 p~dp~~~~~~~~al~~Lg~~l~~----~g~~eeA~~~l~~aL~l~P 544 (572)
++ ..++..+|.+|.. .+++++|+++|+++++.++
T Consensus 144 --~~------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 181 (273)
T 1ouv_A 144 --ND------GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD 181 (273)
T ss_dssp --TC------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred --Cc------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 21 2567789999999 9999999999999998854
No 94
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.32 E-value=1.6e-11 Score=107.78 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=99.2
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhh
Q 008246 397 NKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQL 476 (572)
Q Consensus 397 ~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~ 476 (572)
..+|.++.+++.+|.++...|++++|+.+|+++++. +|++. .++..+|.++...|
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~~-------~~~~~l~~~~~~~~------------- 57 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVA-------VYYTNRALCYLKMQ------------- 57 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTT-------------
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-----CcCcH-------HHHHHHHHHHHHhc-------------
Confidence 467899999999999999999999999999999986 56553 46788999999999
Q ss_pred hHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHH
Q 008246 477 KLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ-----YNELLE 551 (572)
Q Consensus 477 ~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~-----~~~~l~ 551 (572)
++++|+..++++++ .+|.+. .++..+|.++...|++++|+.+|+++++++|+ ......
T Consensus 58 ---------~~~~A~~~~~~al~----~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 120 (137)
T 3q49_B 58 ---------QPEQALADCRRALE----LDGQSV----KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 120 (137)
T ss_dssp ---------CHHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHH
T ss_pred ---------CHHHHHHHHHHHHH----hCchhH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHH
Confidence 99999999999999 455433 56778999999999999999999999999998 556655
Q ss_pred hccc
Q 008246 552 QLEN 555 (572)
Q Consensus 552 ~l~~ 555 (572)
.+..
T Consensus 121 ~l~~ 124 (137)
T 3q49_B 121 ALRI 124 (137)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 95
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.32 E-value=9.7e-11 Score=125.32 Aligned_cols=67 Identities=13% Similarity=0.058 Sum_probs=52.4
Q ss_pred hccHHHHHHHHHHHhc-----CC-CCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008246 484 QEKWEEGIAHLERIGN-----LK-EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 551 (572)
Q Consensus 484 ~g~~~eAi~~l~kal~-----l~-~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~ 551 (572)
.|++++|+..|+++++ +. .|.+.........++..+|.++...|++++|..+|+++++.+|+ ...+.
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~ 274 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYI 274 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHH
Confidence 7899999999999998 42 22221112344567888999999999999999999999999999 65443
No 96
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.32 E-value=8.3e-12 Score=122.29 Aligned_cols=128 Identities=15% Similarity=0.145 Sum_probs=105.7
Q ss_pred HHHhcCCcccHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHH
Q 008246 378 KFLSKGDKERPIPLLQLALNK----EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (572)
Q Consensus 378 ~~~~~g~~~~A~~~l~~AL~~----dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~ 453 (572)
.+...|++++|+..|+++++. +|+++.+++.+|.++...|++++|+++|+++++. +|++. .++.
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~-------~~~~ 81 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI-----RPDMP-------EVFN 81 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCCH-------HHHH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-----CCCcH-------HHHH
Confidence 334568899999999999998 4678899999999999999999999999999986 66553 4678
Q ss_pred HHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHH
Q 008246 454 WSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAE 533 (572)
Q Consensus 454 ~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~ 533 (572)
.+|.++...| ++++|++.|+++++ .+|.+. .++..+|.++...|++++|+
T Consensus 82 ~la~~~~~~~----------------------~~~~A~~~~~~al~----~~~~~~----~~~~~la~~~~~~g~~~~A~ 131 (275)
T 1xnf_A 82 YLGIYLTQAG----------------------NFDAAYEAFDSVLE----LDPTYN----YAHLNRGIALYYGGRDKLAQ 131 (275)
T ss_dssp HHHHHHHHTT----------------------CHHHHHHHHHHHHH----HCTTCT----HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcc----------------------CHHHHHHHHHHHHh----cCcccc----HHHHHHHHHHHHhccHHHHH
Confidence 8999999999 88888888888888 344332 45667888888888888888
Q ss_pred HHHHHHHHhCCCCH
Q 008246 534 KYLRLAAAHNPQYN 547 (572)
Q Consensus 534 ~~l~~aL~l~P~~~ 547 (572)
++|+++++.+|++.
T Consensus 132 ~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 132 DDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHHHHHHCTTCH
T ss_pred HHHHHHHHhCCCCh
Confidence 88888888888876
No 97
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.31 E-value=8.7e-12 Score=116.69 Aligned_cols=149 Identities=10% Similarity=-0.031 Sum_probs=119.8
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHHHHHh------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008246 367 LTPKELIALSVKFLSKGDKERPIPLLQLALN------KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (572)
Q Consensus 367 ~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~------~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~ 440 (572)
..+..+..+|..+...|++++|+.+++++++ ..+..+.++..+|.++...|++++|+++|++++++. ...++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~ 101 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELL--ASLPE 101 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHSCC
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcCc
Confidence 4578899999999999999999999999999 667778999999999999999999999999999852 11221
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHH
Q 008246 441 EPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLA 520 (572)
Q Consensus 441 ~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg 520 (572)
+ ......++.++|.++...| ++++|+.++++++++.. ...+......++..+|
T Consensus 102 ~---~~~~~~~~~~lg~~~~~~g----------------------~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~la 154 (203)
T 3gw4_A 102 D---PLAASANAYEVATVALHFG----------------------DLAGARQEYEKSLVYAQ--QADDQVAIACAFRGLG 154 (203)
T ss_dssp C---HHHHHHHHHHHHHHHHHHT----------------------CHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred c---HHHHHHHHHHHHHHHHHhC----------------------CHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHH
Confidence 1 1123456788899999999 99999999999996321 1111222334568899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Q 008246 521 SALCNVGRNAEAEKYLRLAAAHNP 544 (572)
Q Consensus 521 ~~l~~~g~~eeA~~~l~~aL~l~P 544 (572)
.++...|++++|.+++++++++..
T Consensus 155 ~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 155 DLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999998753
No 98
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.31 E-value=3.2e-13 Score=146.61 Aligned_cols=137 Identities=14% Similarity=0.100 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
++.+..+|..+...|++++|+++|++|++.+|+++.+++.+|.+|.++|++++|+++|++|+++ +|++.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~------ 74 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKYI------ 74 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTCH------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCH------
Confidence 3445677888889999999999999999999999999999999999999999999999999985 66553
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHH--HHHc
Q 008246 449 IVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA--LCNV 526 (572)
Q Consensus 449 ~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~--l~~~ 526 (572)
.+++++|.++..+| ++++|++.|++++++ +|++. .++..++.+ +.++
T Consensus 75 -~~~~~lg~~~~~~g----------------------~~~eA~~~~~~al~~----~p~~~----~~~~~l~~~~~~~~~ 123 (477)
T 1wao_1 75 -KGYYRRAASNMALG----------------------KFRAALRDYETVVKV----KPHDK----DAKMKYQECNKIVKQ 123 (477)
T ss_dssp -HHHHHHHHHHHHHT----------------------CHHHHHHHHHHHHHH----STTCT----THHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHh----CCCCH----HHHHHHHHHHHHHHH
Confidence 46788999999999 999999999999993 44433 345567777 8899
Q ss_pred CCHHHHHHHHH-----------HHHHhCCCCH
Q 008246 527 GRNAEAEKYLR-----------LAAAHNPQYN 547 (572)
Q Consensus 527 g~~eeA~~~l~-----------~aL~l~P~~~ 547 (572)
|++++|++.++ ++++.+|++.
T Consensus 124 g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 124 KAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp HHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred HHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 99999999999 8888888753
No 99
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.31 E-value=1.4e-11 Score=116.33 Aligned_cols=133 Identities=11% Similarity=0.019 Sum_probs=104.8
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI----------------NALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~----------------~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
.++.+..+|..+...|++++|+.+|+++++.+|+++ .+++.+|.+|...|++++|+.+|+++++
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999987 8999999999999999999999999998
Q ss_pred hhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhh
Q 008246 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAH 511 (572)
Q Consensus 432 ~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~ 511 (572)
+ +|.+. .+++.+|.++...| ++++|++.|+++++ .+|.+.
T Consensus 117 ~-----~p~~~-------~~~~~lg~~~~~~~----------------------~~~~A~~~~~~al~----~~p~~~-- 156 (198)
T 2fbn_A 117 I-----DKNNV-------KALYKLGVANMYFG----------------------FLEEAKENLYKAAS----LNPNNL-- 156 (198)
T ss_dssp H-----STTCH-------HHHHHHHHHHHHHT----------------------CHHHHHHHHHHHHH----HSTTCH--
T ss_pred h-----CcccH-------HHHHHHHHHHHHcc----------------------cHHHHHHHHHHHHH----HCCCcH--
Confidence 5 55543 46788899999999 99999999999998 355433
Q ss_pred hhHHHHHHHHHHHHcCCHHHHH-HHHHHHHHh
Q 008246 512 YYDGLVVLASALCNVGRNAEAE-KYLRLAAAH 542 (572)
Q Consensus 512 ~~~al~~Lg~~l~~~g~~eeA~-~~l~~aL~l 542 (572)
.++..++.++...|+.+++. ..|.+.+..
T Consensus 157 --~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 157 --DIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp --HHHHHHHHHHHHHHHHHC------------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45667899999988888887 555555543
No 100
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.29 E-value=1.8e-10 Score=122.53 Aligned_cols=177 Identities=14% Similarity=0.042 Sum_probs=131.2
Q ss_pred hhhccccCCCCHHHHHHHHHHHHh----cCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008246 358 KQLKISVENLTPKELIALSVKFLS----KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (572)
Q Consensus 358 ~~~ai~~~~~~~~~~~~lA~~~~~----~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l 433 (572)
+.++++.+|.++..+..+|..+.. .|++++|+.+|+++++.+|++..++..+|.+|...|++++|+++|++|++.
T Consensus 198 ~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~- 276 (472)
T 4g1t_A 198 LRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY- 276 (472)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-
Confidence 346888899999999888877654 578899999999999999999999999999999999999999999999986
Q ss_pred hhcCCCCChhhhhHHHHHHHHHHHHHHHhhchh-----------------hHHH-------HHhhh-------hhHhhhh
Q 008246 434 FLAGHPTEPEAIDLLIVASQWSGVACIRQAAHN-----------------FFEL-------VQQGQ-------LKLLSFV 482 (572)
Q Consensus 434 ~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~-----------------~~~a-------~~~~~-------~~~~~~~ 482 (572)
+|++. .++..+|.++...+... +.++ ...+. ..+.++.
T Consensus 277 ----~p~~~-------~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 277 ----IPNNA-------YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHA 345 (472)
T ss_dssp ----STTCH-------HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHH
T ss_pred ----CCChH-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHH
Confidence 66654 35677888776554211 1111 11111 2345688
Q ss_pred hhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008246 483 SQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA-LCNVGRNAEAEKYLRLAAAHNPQYNELLE 551 (572)
Q Consensus 483 ~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~-l~~~g~~eeA~~~l~~aL~l~P~~~~~l~ 551 (572)
..|++++|++.|++++++ ++..... ...+..+|.+ +...|++++|+.+|+++++++|+......
T Consensus 346 ~~~~~~~A~~~~~kaL~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~ 410 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSK----ELTPVAK-QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK 410 (472)
T ss_dssp HTTCHHHHHHHHHHHHHS----CCCHHHH-HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HhccHHHHHHHHHHHHhc----CCCChHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH
Confidence 899999999999999983 4433221 1234556654 45789999999999999999998865433
No 101
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.29 E-value=6.8e-11 Score=100.58 Aligned_cols=117 Identities=24% Similarity=0.355 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLL 448 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~ 448 (572)
...++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+.+|+++++. +|.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~------ 77 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA------ 77 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCccH------
Confidence 6789999999999999999999999999999999999999999999999999999999999985 55442
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcC
Q 008246 449 IVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG 527 (572)
Q Consensus 449 ~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g 527 (572)
..+..+|.++...| ++++|+..++++++ .+|.+. .++..+|.++...|
T Consensus 78 -~~~~~la~~~~~~~----------------------~~~~A~~~~~~~~~----~~~~~~----~~~~~l~~~~~~~g 125 (125)
T 1na0_A 78 -EAWYNLGNAYYKQG----------------------DYDEAIEYYQKALE----LDPNNA----EAKQNLGNAKQKQG 125 (125)
T ss_dssp -HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHhc----------------------CHHHHHHHHHHHHH----hCCCcH----HHHHHHHHHHHhcc
Confidence 35678899999999 99999999999999 345433 45567888877654
No 102
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.29 E-value=5.7e-12 Score=118.99 Aligned_cols=147 Identities=15% Similarity=0.063 Sum_probs=113.1
Q ss_pred HHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhh---------h
Q 008246 376 SVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAI---------D 446 (572)
Q Consensus 376 A~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~---------~ 446 (572)
+......|++++|.+.++...+..++.+..+..+|..+...|++++|+.+|++|+++ .|.++... .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF-----FIHTEEWDDQILLDKKKN 85 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TTTCTTCCCHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HhcccccchhhHHHHHHH
Confidence 444556789999999999888888999999999999999999999999999999985 45443110 0
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHc
Q 008246 447 LLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 526 (572)
Q Consensus 447 ~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~ 526 (572)
....++.++|.++...| ++++|+.+++++++ .+|.+. .++..+|.++..+
T Consensus 86 ~~~~~~~~la~~~~~~~----------------------~~~~A~~~~~~al~----~~p~~~----~~~~~lg~~~~~~ 135 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNK----------------------DYPKAIDHASKVLK----IDKNNV----KALYKLGVANMYF 135 (198)
T ss_dssp HHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH----HSTTCH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc----------------------CHHHHHHHHHHHHH----hCcccH----HHHHHHHHHHHHc
Confidence 11246778888888888 99999999999999 355433 5677899999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHhccccc
Q 008246 527 GRNAEAEKYLRLAAAHNPQYNELLEQLENND 557 (572)
Q Consensus 527 g~~eeA~~~l~~aL~l~P~~~~~l~~l~~~~ 557 (572)
|++++|+++|+++++++|++...+..+....
T Consensus 136 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 136 GFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 9999999999999999999988777666633
No 103
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.29 E-value=1.3e-11 Score=120.61 Aligned_cols=150 Identities=17% Similarity=0.141 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~--------dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P 439 (572)
....+..+|..+...|++++|+.+|+++++. +|....++..+|.++...|++++|+++|+++++.......+
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 163 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP 163 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4678999999999999999999999999998 68889999999999999999999999999999741101112
Q ss_pred CChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCC-----CCC--------
Q 008246 440 TEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEP-----EEP-------- 506 (572)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p-----~dp-------- 506 (572)
++ +....++..+|.++...| ++++|++.+++++++... .++
T Consensus 164 ~~----~~~~~~~~~la~~~~~~g----------------------~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 217 (283)
T 3edt_B 164 DD----PNVAKTKNNLASCYLKQG----------------------KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMH 217 (283)
T ss_dssp TC----HHHHHHHHHHHHHHHHHT----------------------CHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHH
T ss_pred CC----HHHHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 22 223457888999999999 888888888877763100 000
Q ss_pred ----------------------------chhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008246 507 ----------------------------KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 507 ----------------------------~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~ 543 (572)
........++..+|.+|...|++++|.++|+++++..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 218 AEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 0111234567889999999999999999999998753
No 104
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=1.1e-11 Score=121.06 Aligned_cols=148 Identities=18% Similarity=0.090 Sum_probs=120.5
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008246 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAG 437 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~--------dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~ 437 (572)
+..+..+..+|..+...|++++|+.+|+++++. +|....++..+|.+|...|++++|+++|+++++......
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 456788999999999999999999999999988 577789999999999999999999999999997410001
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCC----CCCCCchhhhhh
Q 008246 438 HPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLK----EPEEPKSKAHYY 513 (572)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~----~p~dp~~~~~~~ 513 (572)
.+++ +....++..+|.++...| ++++|++++++++++. .+.+|. ..
T Consensus 120 ~~~~----~~~~~~~~~la~~~~~~g----------------------~~~~A~~~~~~al~~~~~~~~~~~~~----~~ 169 (283)
T 3edt_B 120 GKFH----PDVAKQLNNLALLCQNQG----------------------KAEEVEYYYRRALEIYATRLGPDDPN----VA 169 (283)
T ss_dssp CTTC----HHHHHHHHHHHHHHHTTT----------------------CHHHHHHHHHHHHHHHHHHSCTTCHH----HH
T ss_pred CCCC----hHHHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHHHHHhcCCCCHH----HH
Confidence 1222 223457888899998888 9999999999999841 112332 34
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008246 514 DGLVVLASALCNVGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 514 ~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~ 543 (572)
.++..+|.++...|++++|+++++++++..
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 577889999999999999999999999873
No 105
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.28 E-value=1.4e-11 Score=128.48 Aligned_cols=167 Identities=11% Similarity=0.020 Sum_probs=126.7
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNK------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~------dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
.++..|..+...|++++|+.+|++|+++ ++..+.+++.+|.+|...|++++|+.++++|+++. +.....
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~ 179 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY-----KEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HTCSTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HhCccc
Confidence 3455999999999999999999999997 33467999999999999999999999999999852 222111
Q ss_pred hhHHHHHHHHHHHHHHHhhchhh-----HHHHHhh-------------hhhHhhhhhhccHHHHHHHHHHHhcCCCCCCC
Q 008246 445 IDLLIVASQWSGVACIRQAAHNF-----FELVQQG-------------QLKLLSFVSQEKWEEGIAHLERIGNLKEPEEP 506 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~~-------------~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp 506 (572)
......++.++|.++...|+.+. .++.+.. ...+.++...|++++|+++|++++++.....
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~- 258 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN- 258 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc-
Confidence 23334578999999999995552 2222221 1234567889999999999999998532111
Q ss_pred chhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008246 507 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 544 (572)
Q Consensus 507 ~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P 544 (572)
+......++.++|.++...|++++|.+++++++++.+
T Consensus 259 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 259 -ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp -CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 1123456788899999999999999999999999853
No 106
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.28 E-value=3e-12 Score=138.00 Aligned_cols=140 Identities=12% Similarity=0.073 Sum_probs=113.5
Q ss_pred hcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh--------hhhHHHHHH
Q 008246 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE--------AIDLLIVAS 452 (572)
Q Consensus 381 ~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~--------~~~~~~~a~ 452 (572)
..+++++|+..|+++++.+|+++.++..+|.+++..|++++|+.+|++|+++ +|.+.. .......++
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~-----~p~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW-----LEMEYGLSEKESKASESFLLAAF 320 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HTTCCSCCHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----hcccccCChHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999986 444410 011223578
Q ss_pred HHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHH
Q 008246 453 QWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEA 532 (572)
Q Consensus 453 ~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA 532 (572)
+++|.++.++| ++++|+.+|+++++ .+|.+. .+++.+|.+|..+|++++|
T Consensus 321 ~nla~~~~~~g----------------------~~~~A~~~~~~al~----~~p~~~----~a~~~~g~a~~~~g~~~~A 370 (457)
T 1kt0_A 321 LNLAMCYLKLR----------------------EYTKAVECCDKALG----LDSANE----KGLYRRGEAQLLMNEFESA 370 (457)
T ss_dssp HHHHHHHHHTT----------------------CHHHHHHHHHHHHH----HSTTCH----HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhc----------------------CHHHHHHHHHHHHh----cCCccH----HHHHHHHHHHHHccCHHHH
Confidence 88899998888 99999999999999 456543 5677899999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHhccc
Q 008246 533 EKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 533 ~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
+.+|+++++++|++...+.++..
T Consensus 371 ~~~~~~al~l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 371 KGDFEKVLEVNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHTTC----CHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999998766555554
No 107
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=5.5e-11 Score=105.10 Aligned_cols=106 Identities=13% Similarity=0.040 Sum_probs=97.0
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q 008246 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~---~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~ 436 (572)
.++..++.+.+.++.+|..+...|++++|+.+|+++++.+|++ ..+++.+|.+|...|++++|+++|+++++.
T Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---- 94 (148)
T 2dba_A 19 RPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---- 94 (148)
T ss_dssp CCCCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred cCCccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 4566677889999999999999999999999999999999998 999999999999999999999999999985
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 437 GHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 437 ~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
+|++. .+++.+|.++...| ++++|+.+|+++++
T Consensus 95 -~~~~~-------~~~~~~a~~~~~~~----------------------~~~~A~~~~~~al~ 127 (148)
T 2dba_A 95 -DGGDV-------KALYRRSQALEKLG----------------------RLDQAVLDLQRCVS 127 (148)
T ss_dssp -TSCCH-------HHHHHHHHHHHHHT----------------------CHHHHHHHHHHHHH
T ss_pred -CccCH-------HHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHH
Confidence 55542 46788999999999 99999999999999
No 108
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.27 E-value=1.1e-10 Score=98.39 Aligned_cols=113 Identities=18% Similarity=0.060 Sum_probs=97.2
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~ 447 (572)
.++.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+++++++. +|++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~----- 72 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-----KPDWG----- 72 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-----CcccH-----
Confidence 36788999999999999999999999999999999999999999999999999999999999985 55543
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHH
Q 008246 448 LIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA 522 (572)
Q Consensus 448 ~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~ 522 (572)
.++..+|.++...| ++++|++.++++++ .+|.+. .++..++.+
T Consensus 73 --~~~~~~a~~~~~~~----------------------~~~~A~~~~~~~~~----~~~~~~----~~~~~l~~~ 115 (118)
T 1elw_A 73 --KGYSRKAAALEFLN----------------------RFEEAKRTYEEGLK----HEANNP----QLKEGLQNM 115 (118)
T ss_dssp --HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHT----TCTTCH----HHHHHHHHH
T ss_pred --HHHHHHHHHHHHHh----------------------hHHHHHHHHHHHHH----cCCCCH----HHHHHHHHh
Confidence 45788899999999 99999999999999 455433 334445544
No 109
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.27 E-value=4.8e-11 Score=108.79 Aligned_cols=124 Identities=19% Similarity=0.147 Sum_probs=98.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh---cCCCCChhh---hhHHHHHHHHHHHHHHHhhchhhHHHHHhhh
Q 008246 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFL---AGHPTEPEA---IDLLIVASQWSGVACIRQAAHNFFELVQQGQ 475 (572)
Q Consensus 402 ~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~---~~~P~~~~~---~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~ 475 (572)
.+..+..+|..++..|++++|+.+|++|++++.. ..+|.+++. .+....++.++|.++.+.|
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~------------ 77 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG------------ 77 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC------------
Confidence 4678899999999999999999999999984210 112332210 2223357888999999999
Q ss_pred hhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHhcc
Q 008246 476 LKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN-ELLEQLE 554 (572)
Q Consensus 476 ~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~-~~l~~l~ 554 (572)
++++|+..++++++ .+|.+. .+++.+|.+|..+|++++|+..|+++++++|++. .....+.
T Consensus 78 ----------~~~~A~~~~~~al~----~~p~~~----~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 78 ----------DLHEAEETSSEVLK----REETNE----KALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp ----------CHHHHHHHHHHHHH----HSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ----------cHHHHHHHHHHHHh----cCCcch----HHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999 456543 5777899999999999999999999999999998 5555555
Q ss_pred c
Q 008246 555 N 555 (572)
Q Consensus 555 ~ 555 (572)
.
T Consensus 140 ~ 140 (162)
T 3rkv_A 140 I 140 (162)
T ss_dssp H
T ss_pred H
Confidence 5
No 110
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.27 E-value=1.5e-11 Score=132.49 Aligned_cols=139 Identities=10% Similarity=0.084 Sum_probs=116.9
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHH
Q 008246 360 LKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---------------INALILMGQTQLQKGLLEEAVE 424 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~---------------~~a~~~LG~l~~~~g~~~eA~~ 424 (572)
.++..++..+..+..+|..+...|++++|+..|++|++.+|++ ..+|+++|.+|...|++++|+.
T Consensus 259 ~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 338 (457)
T 1kt0_A 259 MDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 338 (457)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3445556667889999999999999999999999999999999 7999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCC
Q 008246 425 YLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPE 504 (572)
Q Consensus 425 ~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~ 504 (572)
+|++|+++ +|++. .+++++|.++..+| ++++|+..|+++++ .
T Consensus 339 ~~~~al~~-----~p~~~-------~a~~~~g~a~~~~g----------------------~~~~A~~~~~~al~----l 380 (457)
T 1kt0_A 339 CCDKALGL-----DSANE-------KGLYRRGEAQLLMN----------------------EFESAKGDFEKVLE----V 380 (457)
T ss_dssp HHHHHHHH-----STTCH-------HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHT----T
T ss_pred HHHHHHhc-----CCccH-------HHHHHHHHHHHHcc----------------------CHHHHHHHHHHHHH----h
Confidence 99999986 66553 57899999999999 99999999999999 4
Q ss_pred CCchhhhhhHHHHHHHHHHHHcCCHHHHHH-HHHHHH
Q 008246 505 EPKSKAHYYDGLVVLASALCNVGRNAEAEK-YLRLAA 540 (572)
Q Consensus 505 dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~-~l~~aL 540 (572)
+|.+. .++..++.++...|++++|.+ .|++.+
T Consensus 381 ~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 381 NPQNK----AARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp C--------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56543 466779999999999998874 444433
No 111
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.27 E-value=2.1e-11 Score=106.57 Aligned_cols=103 Identities=23% Similarity=0.167 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhh
Q 008246 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVS 483 (572)
Q Consensus 404 ~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~ 483 (572)
..++.+|..+.+.|++++|+..|++|++. +|++. .+++.+|.++...|
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~-------~a~~~lg~~~~~~g-------------------- 65 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQK-----EPERE-------EAWRSLGLTQAENE-------------------- 65 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH-------HHHHHHHHHHHHTT--------------------
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCH-------HHHHHHHHHHHHcC--------------------
Confidence 35789999999999999999999999986 66653 46888999999999
Q ss_pred hccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 484 QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 484 ~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
++++|+..|+++++ .+|++. .++..+|.++...|++++|+++|+++++.+|++..
T Consensus 66 --~~~~A~~~~~~al~----l~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 66 --KDGLAIIALNHARM----LDPKDI----AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp --CHHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred --CHHHHHHHHHHHHH----hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999 456543 56778999999999999999999999999998754
No 112
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=1.3e-11 Score=122.87 Aligned_cols=148 Identities=19% Similarity=0.164 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKE--------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~d--------P~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P 439 (572)
....+..+|..+...|++++|+.+|+++++.. |....++..+|.++...|++++|+++|+++++.......+
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 46788999999999999999999999999884 7778999999999999999999999999999741000011
Q ss_pred CChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCC----------------
Q 008246 440 TEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEP---------------- 503 (572)
Q Consensus 440 ~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p---------------- 503 (572)
+ .+....++..+|.++...| ++++|++.+++++++...
T Consensus 190 ~----~~~~~~~~~~la~~~~~~g----------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 243 (311)
T 3nf1_A 190 D----DPNVAKTKNNLASCYLKQG----------------------KFKQAETLYKEILTRAHEREFGSVDDENKPIWMH 243 (311)
T ss_dssp T----CHHHHHHHHHHHHHHHHHT----------------------CHHHHHHHHHHHHHHHHHHHHC------CCHHHH
T ss_pred C----CHHHHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 1 2223456788899999999 777777777777752100
Q ss_pred -----------------------------CCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008246 504 -----------------------------EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 504 -----------------------------~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~ 545 (572)
.+| ....++..+|.+|...|++++|.++|++++++.|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSP----TVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 112 23456788999999999999999999999998875
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.27 E-value=2.5e-11 Score=123.26 Aligned_cols=147 Identities=15% Similarity=0.091 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPD------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~------~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
...+..+|..+...|++++|+.+|++|+++.++ .+.++..+|.+|.. |++++|+++|++|+++ .+...
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~-----~~~~~ 149 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV-----FENEE 149 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH-----HHHTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH-----HHhCC
Confidence 457889999999999999999999999998543 25788999999988 9999999999999985 22111
Q ss_pred hhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHH
Q 008246 443 EAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA 522 (572)
Q Consensus 443 ~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~ 522 (572)
.......++.++|.++.++| ++++|+++|++++++. +.++. .......+..+|.+
T Consensus 150 -~~~~~~~~~~~lg~~~~~~g----------------------~~~~A~~~~~~al~~~-~~~~~-~~~~~~~~~~~g~~ 204 (307)
T 2ifu_A 150 -RLRQAAELIGKASRLLVRQQ----------------------KFDEAAASLQKEKSMY-KEMEN-YPTCYKKCIAQVLV 204 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHH-HHTTC-HHHHHHHHHHHHHH
T ss_pred -ChhHHHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHHH-HHcCC-hhHHHHHHHHHHHH
Confidence 11222356778888888888 9999999999999842 11111 11122467789999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH
Q 008246 523 LCNVGRNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 523 l~~~g~~eeA~~~l~~aL~l~P~~~ 547 (572)
+...|++++|+.+|++++ ++|++.
T Consensus 205 ~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 205 QLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 999999999999999999 999764
No 114
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.26 E-value=6.9e-12 Score=129.74 Aligned_cols=141 Identities=9% Similarity=0.030 Sum_probs=90.8
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008246 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-----------------NALILMGQTQLQKGLLEEAVEYLEC 428 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~-----------------~a~~~LG~l~~~~g~~~eA~~~~~r 428 (572)
+..+..+..+|..+...|++++|+.+|++|++.+|++. .+|+++|.+|...|++++|+.+|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33467889999999999999999999999999999988 4999999999999999999999999
Q ss_pred HHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCch
Q 008246 429 AISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKS 508 (572)
Q Consensus 429 Al~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~ 508 (572)
|+++ +|++. .+++++|.++..+| ++++|+..|+++++ .+|.+
T Consensus 256 al~~-----~p~~~-------~a~~~lg~a~~~~g----------------------~~~~A~~~l~~al~----l~p~~ 297 (338)
T 2if4_A 256 VLTE-----EEKNP-------KALFRRGKAKAELG----------------------QMDSARDDFRKAQK----YAPDD 297 (338)
T ss_dssp HHHH-----CTTCH-------HHHHHHHHHHHTTT----------------------CHHHHHHHHHHTTC---------
T ss_pred HHHh-----CCCCH-------HHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHH----HCCCC
Confidence 9986 56553 46889999999999 99999999999999 45544
Q ss_pred hhhhhHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 509 KAHYYDGLVVLASA-LCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 509 ~~~~~~al~~Lg~~-l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
. .++..++.+ ....++.+++.+.|++++..+|++..
T Consensus 298 ~----~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 298 K----AIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -----------------------------------------
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 3 345567777 44567888899999999999998753
No 115
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.26 E-value=3.7e-11 Score=120.85 Aligned_cols=145 Identities=14% Similarity=0.088 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~------~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~ 443 (572)
..++.+|..+...|++++|+.+|+++++..++. ..+++.+|.+|...|++++|+.+|++|+++. ...|.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~--~~~~~~~- 192 (293)
T 2qfc_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL--EALHDNE- 192 (293)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHSCCCH-
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HhcCccc-
Confidence 446778899999999999999999999876655 6799999999999999999999999999631 1133322
Q ss_pred hhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHH
Q 008246 444 AIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL 523 (572)
Q Consensus 444 ~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l 523 (572)
.....+++++|.++..+| ++++|++++++++++. .+..+......++.++|.+|
T Consensus 193 --~~~~~~~~nlg~~y~~~~----------------------~y~~Al~~~~kal~~~--~~~~~~~~~~~~~~~lg~~y 246 (293)
T 2qfc_A 193 --EFDVKVRYNHAKALYLDS----------------------RYEESLYQVNKAIEIS--CRINSMALIGQLYYQRGECL 246 (293)
T ss_dssp --HHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHH--HHTTBCSSHHHHHHHHHHHH
T ss_pred --cchHHHHHhHHHHHHHHh----------------------hHHHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHH
Confidence 112257889999999999 9999999999999842 11111112346778999999
Q ss_pred HHcCCHHHH-HHHHHHHHHhC
Q 008246 524 CNVGRNAEA-EKYLRLAAAHN 543 (572)
Q Consensus 524 ~~~g~~eeA-~~~l~~aL~l~ 543 (572)
..+|++++| ..+|++++++.
T Consensus 247 ~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 247 RKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHTTCCHHHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHHH
Confidence 999999999 88899998764
No 116
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.25 E-value=2.4e-11 Score=126.67 Aligned_cols=160 Identities=11% Similarity=0.009 Sum_probs=118.8
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPD-------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~-------~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~ 440 (572)
.+..++.+|..+...|++++|+.++++|++..++ .+.++..+|.+|...|++++|+++|++|+++ .+.
T Consensus 142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~ 216 (383)
T 3ulq_A 142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM-----AEA 216 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----HHH
Confidence 4678999999999999999999999999998443 4579999999999999999999999999985 121
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhchhh-----HHHHHh-----h--------hhhHhhhhhhccHHHHHHHHHHHhcCCC
Q 008246 441 EPEAIDLLIVASQWSGVACIRQAAHNF-----FELVQQ-----G--------QLKLLSFVSQEKWEEGIAHLERIGNLKE 502 (572)
Q Consensus 441 ~~~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~-----~--------~~~~~~~~~~g~~~eAi~~l~kal~l~~ 502 (572)
.. +......++.++|.++..+|+.+. .++... + ...+.++...|++++|++++++++++
T Consensus 217 ~~-~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 293 (383)
T 3ulq_A 217 EK-QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY-- 293 (383)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred cC-ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 11 223334578999999999996552 223331 1 11345688899999999999999993
Q ss_pred CCCCch-hhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 008246 503 PEEPKS-KAHYYDGLVVLASALCNVGRNAEAEKYLR 537 (572)
Q Consensus 503 p~dp~~-~~~~~~al~~Lg~~l~~~g~~eeA~~~l~ 537 (572)
.+.. ...+...+..+|.++...|+.+...+.+.
T Consensus 294 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~ 327 (383)
T 3ulq_A 294 --SQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFD 327 (383)
T ss_dssp --HHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHH
T ss_pred --HHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 2221 12233346789999999999943333333
No 117
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.25 E-value=1.7e-11 Score=122.00 Aligned_cols=148 Identities=20% Similarity=0.199 Sum_probs=120.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q 008246 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNK--------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~--------dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~ 436 (572)
+|.+.+.+..+|..+...|++++|+.+|+++++. +|....++..+|.+|...|++++|+.+|+++++.....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999995 78889999999999999999999999999999741000
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCC----CCCCchhhhh
Q 008246 437 GHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKE----PEEPKSKAHY 512 (572)
Q Consensus 437 ~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~----p~dp~~~~~~ 512 (572)
..++ .+....++..+|.++...| ++++|++.+++++++.. +.+| ..
T Consensus 103 ~~~~----~~~~~~~~~~l~~~~~~~g----------------------~~~~A~~~~~~a~~~~~~~~~~~~~----~~ 152 (311)
T 3nf1_A 103 LGKD----HPAVAATLNNLAVLYGKRG----------------------KYKEAEPLCKRALEIREKVLGKDHP----DV 152 (311)
T ss_dssp HCTT----CHHHHHHHHHHHHHHHTTT----------------------CHHHHHHHHHHHHHHHHHHHCTTCH----HH
T ss_pred hCCC----ChHHHHHHHHHHHHHHHcC----------------------cHHHHHHHHHHHHHHHHHhcCCCCh----HH
Confidence 0011 1223456788888888888 99999999999997410 1122 23
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 513 YDGLVVLASALCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 513 ~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l 542 (572)
..++..+|.++...|++++|+++|+++++.
T Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 153 AKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467788999999999999999999999998
No 118
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.25 E-value=1.9e-11 Score=112.13 Aligned_cols=104 Identities=9% Similarity=-0.007 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhh--
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPD-------NIN-----ALILMGQTQLQKGLLEEAVEYLECAISKL-- 433 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~-------~~~-----a~~~LG~l~~~~g~~~eA~~~~~rAl~~l-- 433 (572)
.++.+...|..+...|++++|+..|++||+.+|+ +.. +|.++|.++...|++++|+.+|++|+++.
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3677899999999999999999999999999999 544 99999999999999999999999999730
Q ss_pred hhcCCCCChhhhhHHHHHH----HHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcC
Q 008246 434 FLAGHPTEPEAIDLLIVAS----QWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNL 500 (572)
Q Consensus 434 ~~~~~P~~~~~~~~~~~a~----~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l 500 (572)
...-+|++ ..+| ++.|.++..+| ++++|+..|++++++
T Consensus 90 ~~e~~pd~-------~~A~~~~~~~rG~aL~~lg----------------------r~eEAl~~y~kAlel 131 (159)
T 2hr2_A 90 RGELNQDE-------GKLWISAVYSRALALDGLG----------------------RGAEAMPEFKKVVEM 131 (159)
T ss_dssp HCCTTSTH-------HHHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHH
T ss_pred cccCCCch-------HHHHHHHHHhHHHHHHHCC----------------------CHHHHHHHHHHHHhc
Confidence 00112322 3456 99999999999 999999999999994
No 119
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.24 E-value=3.9e-11 Score=125.24 Aligned_cols=169 Identities=12% Similarity=-0.014 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNK------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~------dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~ 443 (572)
..++.+|..+...|++++|+.+|+++++. +|....++..+|.+|...|++++|+.+|+++++.. +...
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~- 160 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA-----RQLG- 160 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHT-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----HHhh-
Confidence 57889999999999999999999999998 78889999999999999999999999999999851 1000
Q ss_pred hhhHHHHHHHHHHHHHHHhhc-----------------hhh-----HHHHHh-------------hhhhHhhhhhhccHH
Q 008246 444 AIDLLIVASQWSGVACIRQAA-----------------HNF-----FELVQQ-------------GQLKLLSFVSQEKWE 488 (572)
Q Consensus 444 ~~~~~~~a~~~lG~~~~~~g~-----------------~~~-----~~a~~~-------------~~~~~~~~~~~g~~~ 488 (572)
+......++..+|.++...|+ .+. .++.+. ....+.++...|+++
T Consensus 161 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 240 (411)
T 4a1s_A 161 DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQ 240 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChH
Confidence 122334578889999999996 331 111111 112345678899999
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 489 EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 489 eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
+|++++++++++. +... +......++..+|.++...|++++|+++|+++++..|+.
T Consensus 241 ~A~~~~~~al~~~-~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 296 (411)
T 4a1s_A 241 AAIEHHQERLRIA-REFG-DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL 296 (411)
T ss_dssp HHHHHHHHHHHHH-HHHT-CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-HhcC-CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 9999999999832 1111 111223467889999999999999999999999887743
No 120
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.23 E-value=4.5e-11 Score=100.00 Aligned_cols=108 Identities=23% Similarity=0.191 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhH
Q 008246 399 EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKL 478 (572)
Q Consensus 399 dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~ 478 (572)
+|+++.+++.+|.++...|++++|+.+|+++++. +|.+. .++..+|.++...|
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~-------~~~~~~a~~~~~~~--------------- 54 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL-----DPEES-------KYWLMKGKALYNLE--------------- 54 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH-----CCCCH-------HHHHHHHHHHHHTT---------------
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----CcCCH-------HHHHHHHHHHHHcc---------------
Confidence 5666666666666666666666666666666654 33332 23455666666666
Q ss_pred hhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 008246 479 LSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV-GRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 479 ~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~-g~~eeA~~~l~~aL~l~P~~ 546 (572)
++++|++.++++++ .+|. .....++..+|.++... |++++|+++++++++.+|+.
T Consensus 55 -------~~~~A~~~~~~a~~----~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 55 -------RYEEAVDCYNYVIN----VIED--EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp -------CHHHHHHHHHHHHH----TSCC--TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred -------CHHHHHHHHHHHHH----hCcc--cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 66666666666666 2332 00123445566666667 77777777777776666653
No 121
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.23 E-value=8.7e-11 Score=107.06 Aligned_cols=103 Identities=22% Similarity=0.178 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNK------------------EPDNINALILMGQTQLQKGLLEEAVEYLECAI 430 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~------------------dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl 430 (572)
++.+...|..++..|++++|+..|+++++. +|.+..+|+++|.+|...|++++|+.++++|+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 678899999999999999999999999999 88888999999999999999999999999999
Q ss_pred HhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchh
Q 008246 431 SKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSK 509 (572)
Q Consensus 431 ~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~ 509 (572)
++ +|++. .+++.+|.++..+| ++++|+..|+++++ .+|.+.
T Consensus 91 ~~-----~p~~~-------~a~~~~g~~~~~~g----------------------~~~~A~~~~~~al~----l~p~~~ 131 (162)
T 3rkv_A 91 KR-----EETNE-------KALFRRAKARIAAW----------------------KLDEAEEDLKLLLR----NHPAAA 131 (162)
T ss_dssp HH-----STTCH-------HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH----HCGGGH
T ss_pred hc-----CCcch-------HHHHHHHHHHHHHh----------------------cHHHHHHHHHHHHh----cCCCCH
Confidence 86 66653 47889999999999 99999999999999 466554
No 122
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.23 E-value=1.4e-10 Score=120.89 Aligned_cols=171 Identities=10% Similarity=0.001 Sum_probs=131.4
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 367 ~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~----~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
.....++.+|..+...|++++|+.+|+++++.+|++. .+++.+|.+|...|++++|+++|++++++. ... .
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~-~-- 120 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA--KSM-N-- 120 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHT-T--
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHc-c--
Confidence 3466788999999999999999999999999999997 689999999999999999999999999741 000 0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhchhh-----HHHHHhh-------------hhhHhhhhhhcc-----------------H
Q 008246 443 EAIDLLIVASQWSGVACIRQAAHNF-----FELVQQG-------------QLKLLSFVSQEK-----------------W 487 (572)
Q Consensus 443 ~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~~-------------~~~~~~~~~~g~-----------------~ 487 (572)
+......++..+|.++...|+.+. .++.... ...+.++...|+ +
T Consensus 121 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~ 199 (411)
T 4a1s_A 121 -DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEAL 199 (411)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHH
Confidence 123344678899999999996542 2222221 123456788999 9
Q ss_pred HHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008246 488 EEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 488 ~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~ 545 (572)
++|++++++++++.. ...+......++..+|.++...|++++|+++|+++++..|+
T Consensus 200 ~~A~~~~~~al~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 200 TRAVEFYQENLKLMR--DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 999999999987321 00111223457788999999999999999999999998764
No 123
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.22 E-value=3.4e-11 Score=125.51 Aligned_cols=167 Identities=9% Similarity=-0.010 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKE------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~d------P~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
.++..|..+...|++++|+.+|++|++.. +..+.+++.+|.+|...|++++|+.++++|+++ .+.....
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~-----~~~~~~~ 177 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI-----YQNHPLY 177 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHTSTTC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-----HHhCCCc
Confidence 56788999999999999999999999873 345789999999999999999999999999985 2221101
Q ss_pred hhHHHHHHHHHHHHHHHhhchhh-----HHHHHhhh-------------hhHhhhhhhccHHHHHHHHHHHhcCCCCCCC
Q 008246 445 IDLLIVASQWSGVACIRQAAHNF-----FELVQQGQ-------------LKLLSFVSQEKWEEGIAHLERIGNLKEPEEP 506 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~~~-------------~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp 506 (572)
......++.++|.++...|+.+. .++.+... ..+.++...|++++|+++|++++++... .
T Consensus 178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~--~ 255 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE--K 255 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--H
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--h
Confidence 12334578899999999996552 22222211 1345678899999999999999985321 0
Q ss_pred chhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008246 507 KSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 507 ~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~ 545 (572)
.+. ....++..+|.++...|++++|.+++++++++.+.
T Consensus 256 ~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 256 VPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp CGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred CCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 112 23567889999999999999999999999998543
No 124
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.22 E-value=1.4e-10 Score=111.31 Aligned_cols=132 Identities=14% Similarity=0.130 Sum_probs=102.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhhhhcCCCCC
Q 008246 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG----LLEEAVEYLECAISKLFLAGHPTE 441 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g----~~~eA~~~~~rAl~~l~~~~~P~~ 441 (572)
..++++++.+|..+...+++++|+.+|+++++. +++.+++.||.+|.. | ++++|+++|++|++. .+
T Consensus 15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-------g~ 84 (212)
T 3rjv_A 15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-------GS 84 (212)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-------TC
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-------CC
Confidence 368999999999999999999999999999875 699999999999998 7 999999999999862 22
Q ss_pred hhhhhHHHHHHHHHHHHHHH----hhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHH
Q 008246 442 PEAIDLLIVASQWSGVACIR----QAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLV 517 (572)
Q Consensus 442 ~~~~~~~~~a~~~lG~~~~~----~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~ 517 (572)
..+++++|.++.. .+ ++++|+++|+++++. .+.. ....++.
T Consensus 85 -------~~a~~~Lg~~y~~g~g~~~----------------------d~~~A~~~~~~A~~~----~~~~--~~~~a~~ 129 (212)
T 3rjv_A 85 -------KSGEIVLARVLVNRQAGAT----------------------DVAHAITLLQDAARD----SESD--AAVDAQM 129 (212)
T ss_dssp -------HHHHHHHHHHHTCGGGSSC----------------------CHHHHHHHHHHHTSS----TTSH--HHHHHHH
T ss_pred -------HHHHHHHHHHHHcCCCCcc----------------------CHHHHHHHHHHHHHc----CCCc--chHHHHH
Confidence 2467888888865 44 777777777777762 2210 1124566
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHh
Q 008246 518 VLASALCN----VGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 518 ~Lg~~l~~----~g~~eeA~~~l~~aL~l 542 (572)
+||.+|.. .+++++|+.+|+++++.
T Consensus 130 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 130 LLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 67777777 66777777777777776
No 125
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=1.5e-10 Score=123.20 Aligned_cols=176 Identities=14% Similarity=0.036 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNK---------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~---------dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
.+..+..+|.++..+|++++|+++|++|+++ +|+...+|.++|.+|..+|++++|+.+|++++++......
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556788999999999999999999999987 7888999999999999999999999999999985211112
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhh-------hh-------Hhh---hhhhccHHHHHHHHHHHhcCC
Q 008246 439 PTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQ-------LK-------LLS---FVSQEKWEEGIAHLERIGNLK 501 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~-------~~-------~~~---~~~~g~~~eAi~~l~kal~l~ 501 (572)
+... + ....+...|.++...|..++.+|+...+ .. +.+ +...+++++|++.|+++++
T Consensus 130 ~~~~---~-~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~-- 203 (472)
T 4g1t_A 130 PYRI---E-SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR-- 203 (472)
T ss_dssp SSCC---C-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH--
T ss_pred ccch---h-hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh--
Confidence 2211 1 1235667787777776333322222111 10 011 1123444555555555555
Q ss_pred CCCCCchhhhhhHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 502 EPEEPKSKAHYYDGLVVLASAL----CNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 502 ~p~dp~~~~~~~~al~~Lg~~l----~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
.+|.+. .++..+|..+ ...|++++|.++|+++++.+|+....+..+..
T Consensus 204 --l~p~~~----~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~ 255 (472)
T 4g1t_A 204 --LNPDNQ----YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAK 255 (472)
T ss_dssp --HCSSCH----HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred --cCCcch----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 233322 1222333332 22345555666666666666655555555444
No 126
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.22 E-value=7.6e-11 Score=101.35 Aligned_cols=106 Identities=16% Similarity=0.141 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~ 447 (572)
.++.++.+|..+...|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+.+|+++++. .|.+......
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~ 77 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV-----GRENREDYRQ 77 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HHHSTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhh-----ccccchhHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999985 3322111111
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcC
Q 008246 448 LIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNL 500 (572)
Q Consensus 448 ~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l 500 (572)
...+++.+|.++...| ++++|++.|++++++
T Consensus 78 ~~~~~~~la~~~~~~~----------------------~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 78 IAKAYARIGNSYFKEE----------------------KYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHh
Confidence 2456888899999999 999999999999993
No 127
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.22 E-value=1.2e-10 Score=101.01 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNI---NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~---~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~ 446 (572)
+.++.+|..+...|++++|+..|+++++.+|++. .+++.+|.++...|++++|+.+|+++++. +|++..
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~--- 74 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHDK--- 74 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTT---
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCcc---
Confidence 4578999999999999999999999999999998 89999999999999999999999999986 666531
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 447 LLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 447 ~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
...+++++|.++...| ++++|++.|+++++
T Consensus 75 -~~~~~~~la~~~~~~g----------------------~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 75 -AAGGLLKLGLSQYGEG----------------------KNTEAQQTLQQVAT 104 (129)
T ss_dssp -HHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHH
Confidence 1246788999999999 99999999999999
No 128
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.22 E-value=1.3e-11 Score=113.08 Aligned_cols=110 Identities=19% Similarity=0.148 Sum_probs=85.6
Q ss_pred hcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008246 381 SKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLL----------EEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (572)
Q Consensus 381 ~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~----------~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~ 450 (572)
+.+.+++|++.++++++++|+++++|+++|.++...|++ ++|+.+|++|+++ +|+.. .
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-----dP~~~-------~ 81 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKD-------E 81 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCH-------H
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-----CcCcH-------H
Confidence 456789999999999999999999999999999998876 4888888888875 55543 4
Q ss_pred HHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHH
Q 008246 451 ASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNA 530 (572)
Q Consensus 451 a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~e 530 (572)
+++++|.+|..+| ++ .|++. . ..|+++
T Consensus 82 A~~~LG~ay~~lg----------------------~l-----------------~P~~~----~----------a~g~~~ 108 (158)
T 1zu2_A 82 AVWCIGNAYTSFA----------------------FL-----------------TPDET----E----------AKHNFD 108 (158)
T ss_dssp HHHHHHHHHHHHH----------------------HH-----------------CCCHH----H----------HHHHHH
T ss_pred HHHHHHHHHHHhc----------------------cc-----------------Ccchh----h----------hhccHH
Confidence 6777777777777 32 12211 1 137999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 531 EAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 531 eA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
+|+++|++|++++|++..+...++.
T Consensus 109 eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 109 LATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999877666554
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.22 E-value=5e-11 Score=119.88 Aligned_cols=144 Identities=15% Similarity=0.092 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~------~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
.+..+|..+...|++++|+.+|++|++..+.. ..++..+|.+|...|++++|+.+|++|++.. ...+.+
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~--~~~~~~--- 191 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL--EALHDN--- 191 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHSSCC---
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--Hhcccc---
Confidence 34468888889999999999999999965443 3479999999999999999999999999742 112222
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHH
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 524 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~ 524 (572)
......+++++|.++.++| ++++|++++++++++.. +..+......++.++|.++.
T Consensus 192 ~~~~~~~~~nlg~~y~~~~----------------------~y~~A~~~~~~al~~~~--~~~~~~~~~~~~~~lg~~~~ 247 (293)
T 3u3w_A 192 EEFDVKVRYNHAKALYLDS----------------------RYEESLYQVNKAIEISC--RINSMALIGQLYYQRGECLR 247 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHHH--HTTBCTTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHh----------------------HHHHHHHHHHHHHHHHH--HcCcHHHHHHHHHHHHHHHH
Confidence 2233457899999999999 99999999999998421 11111123467889999999
Q ss_pred HcCC-HHHHHHHHHHHHHhC
Q 008246 525 NVGR-NAEAEKYLRLAAAHN 543 (572)
Q Consensus 525 ~~g~-~eeA~~~l~~aL~l~ 543 (572)
.+|+ +++|.++|++|+++.
T Consensus 248 ~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 248 KLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HTTCCHHHHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHH
Confidence 9995 699999999999864
No 130
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.21 E-value=3.7e-11 Score=100.50 Aligned_cols=101 Identities=18% Similarity=0.123 Sum_probs=91.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC--Ch
Q 008246 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT--EP 442 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~--~~ 442 (572)
+|.+++.++.+|..+...|++++|+.+|+++++.+|++..+++.+|.++...|++++|+++|+++++. +|. +.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~ 76 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-----IEDEYNK 76 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----SCCTTCH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CcccchH
Confidence 35566788999999999999999999999999999999999999999999999999999999999985 555 32
Q ss_pred hhhhHHHHHHHHHHHHHHHh-hchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 443 EAIDLLIVASQWSGVACIRQ-AAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 443 ~~~~~~~~a~~~lG~~~~~~-g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
.++..+|.++... | ++++|++.++++++
T Consensus 77 -------~~~~~l~~~~~~~~~----------------------~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 77 -------DVWAAKADALRYIEG----------------------KEVEAEIAEARAKL 105 (112)
T ss_dssp -------HHHHHHHHHHTTCSS----------------------CSHHHHHHHHHHGG
T ss_pred -------HHHHHHHHHHHHHhC----------------------CHHHHHHHHHHHhh
Confidence 4678889999988 8 99999999999999
No 131
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.4e-10 Score=102.39 Aligned_cols=121 Identities=15% Similarity=0.140 Sum_probs=102.8
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhh
Q 008246 396 LNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQ 475 (572)
Q Consensus 396 L~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~ 475 (572)
...+|+++..++.+|..+...|++++|+++|+++++. +|++. ....++.++|.++...|
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~----~~~~~~~~~a~~~~~~~------------ 79 (148)
T 2dba_A 21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQ----DQAVLHRNRAACHLKLE------------ 79 (148)
T ss_dssp CCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHH----HHHHHHHHHHHHHHHTT------------
T ss_pred CccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccch----HHHHHHHHHHHHHHHHc------------
Confidence 3467899999999999999999999999999999974 44431 12356888999999999
Q ss_pred hhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 476 LKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 476 ~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
++++|++.++++++ .+|.+. .++..+|.++...|++++|+++|+++++.+|++...+..+.+
T Consensus 80 ----------~~~~A~~~~~~~~~----~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 80 ----------DYDKAETEASKAIE----KDGGDV----KALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp ----------CHHHHHHHHHHHHH----HTSCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred ----------cHHHHHHHHHHHHh----hCccCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 99999999999999 355432 567789999999999999999999999999999887776665
No 132
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.21 E-value=5.5e-11 Score=123.00 Aligned_cols=170 Identities=13% Similarity=-0.032 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNK------EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~------dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
...++.+|..+...|++++|+.+++++++. +|..+.++..+|.++...|++++|+.+|++++++. +...
T Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~ 121 (406)
T 3sf4_A 47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS-----RELN 121 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----Hhcc
Confidence 457889999999999999999999999887 56668899999999999999999999999999751 1111
Q ss_pred hhhhHHHHHHHHHHHHHHHhhc--------------------hhh-----HHHHHh-------------hhhhHhhhhhh
Q 008246 443 EAIDLLIVASQWSGVACIRQAA--------------------HNF-----FELVQQ-------------GQLKLLSFVSQ 484 (572)
Q Consensus 443 ~~~~~~~~a~~~lG~~~~~~g~--------------------~~~-----~~a~~~-------------~~~~~~~~~~~ 484 (572)
+......++..+|.++...|+ .+. .++... ....+.++...
T Consensus 122 -~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 200 (406)
T 3sf4_A 122 -DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLL 200 (406)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc
Confidence 112234478889999999996 331 111111 11234567889
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 485 EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 485 g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
|++++|++.+++++++. +..+. ......++..+|.++...|++++|+++|+++++..|+.
T Consensus 201 g~~~~A~~~~~~al~~~-~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 260 (406)
T 3sf4_A 201 GNFRDAVIAHEQRLLIA-KEFGD-KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 260 (406)
T ss_dssp TBHHHHHHHHHHHHHHH-HHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHH-HhcCC-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence 99999999999999742 11121 12233477889999999999999999999999887654
No 133
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.21 E-value=1.6e-10 Score=100.21 Aligned_cols=117 Identities=17% Similarity=0.214 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhh
Q 008246 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFV 482 (572)
Q Consensus 403 ~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~ 482 (572)
+++++.+|..+...|++++|++.|+++++. +|+++ ....+++.+|.++.+.|
T Consensus 2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~----~~~~~~~~lg~~~~~~~------------------- 53 (129)
T 2xev_A 2 ARTAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGV----YTPNALYWLGESYYATR------------------- 53 (129)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSST----THHHHHHHHHHHHHHTT-------------------
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCc----ccHHHHHHHHHHHHHhc-------------------
Confidence 346889999999999999999999999985 66653 11246788999999999
Q ss_pred hhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 483 SQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 483 ~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
++++|+..|+++++ .+|++. ....++..+|.++...|++++|+++|+++++.+|+..........
T Consensus 54 ---~~~~A~~~~~~~~~----~~p~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 54 ---NFQLAEAQFRDLVS----RYPTHD-KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp ---CHHHHHHHHHHHHH----HCTTST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHH----HCCCCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 99999999999999 344331 123567889999999999999999999999999998875554444
No 134
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.21 E-value=3e-10 Score=95.66 Aligned_cols=113 Identities=21% Similarity=0.255 Sum_probs=97.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhh
Q 008246 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLS 480 (572)
Q Consensus 401 ~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~ 480 (572)
+.+.+++.+|..+...|++++|+.+|++++.. +|.+. .++..+|.++...|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~~~a~~~~~~~----------------- 52 (118)
T 1elw_A 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHNH-------VLYSNRSAAYAKKG----------------- 52 (118)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHT-----------------
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcH-------HHHHHHHHHHHhhc-----------------
Confidence 35788999999999999999999999999985 55543 35788899999999
Q ss_pred hhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 481 FVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 481 ~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
++++|+..++++++ .+|.+. .++..+|.++...|++++|.++|+++++.+|++...+..+..
T Consensus 53 -----~~~~A~~~~~~~~~----~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 53 -----DYQKAYEDGCKTVD----LKPDWG----KGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp -----CHHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHH----hCcccH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999 345432 566789999999999999999999999999999887766654
No 135
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.21 E-value=1.3e-10 Score=120.26 Aligned_cols=171 Identities=12% Similarity=-0.003 Sum_probs=131.5
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~----~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~ 443 (572)
....++..|..+...|++++|+.+|+++++.+|++ +.++..+|.++...|++++|+.+|++|+.+. ....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~- 81 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-----RTIG- 81 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHTT-
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-----Hhcc-
Confidence 46788999999999999999999999999999999 4789999999999999999999999999751 1100
Q ss_pred hhhHHHHHHHHHHHHHHHhhchhh-----HHHHHhh-------------hhhHhhhhhhcc-------------------
Q 008246 444 AIDLLIVASQWSGVACIRQAAHNF-----FELVQQG-------------QLKLLSFVSQEK------------------- 486 (572)
Q Consensus 444 ~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~~-------------~~~~~~~~~~g~------------------- 486 (572)
+.+....++..+|.++...|+.+. .++.... ...+.++...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 122334578889999999995542 1122211 123456788999
Q ss_pred -HHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 487 -WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 487 -~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
+++|++.+++++++.... .+......++..+|.++...|++++|+++++++++..|+.
T Consensus 162 ~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 999999999998742111 1122334577889999999999999999999999886543
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.21 E-value=7.8e-11 Score=101.89 Aligned_cols=116 Identities=17% Similarity=0.155 Sum_probs=99.1
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhh
Q 008246 398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLK 477 (572)
Q Consensus 398 ~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~ 477 (572)
..|.+..+++.+|.++...|++++|+++|+++++. +|.+. .++..+|.++...|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~-------~~~~~la~~~~~~~-------------- 64 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-----NPKDA-------KLYSNRAACYTKLL-------------- 64 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----CTTCH-------HHHHHHHHHHTTTT--------------
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcH-------HHHHHHHHHHHHhc--------------
Confidence 45788999999999999999999999999999974 55442 45788899998888
Q ss_pred HhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 478 LLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 478 ~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
++++|++.++++++ .+|.+. .++..+|.++...|++++|+++|+++++.+|++...+..+..
T Consensus 65 --------~~~~A~~~~~~a~~----~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 126 (133)
T 2lni_A 65 --------EFQLALKDCEECIQ----LEPTFI----KGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 126 (133)
T ss_dssp --------CHHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHH
T ss_pred --------cHHHHHHHHHHHHH----hCCCch----HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999 345432 567789999999999999999999999999998776665554
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.20 E-value=3.7e-10 Score=113.51 Aligned_cols=147 Identities=14% Similarity=-0.022 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI------NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~------~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
.+.+...+..+...|++++|+..++++++..+... ..++.+|.++...|++++|+.+|++|+.. .+...
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~ 149 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ-----QLTGI 149 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTT-----CCCSS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-----HhcCC
Confidence 34567788899999999999999999999988765 44678999999999999999999999974 22221
Q ss_pred hhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHH
Q 008246 443 EAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA 522 (572)
Q Consensus 443 ~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~ 522 (572)
+......++.++|.++...| ++++|+.+|++++++.+ ..+.+......++.++|.+
T Consensus 150 -~~~~~~~~~~~lg~~y~~~~----------------------~~~~A~~~~~kal~~~~-~~~~~~~~~~~~~~nlg~~ 205 (293)
T 2qfc_A 150 -DVYQNLYIENAIANIYAENG----------------------YLKKGIDLFEQILKQLE-ALHDNEEFDVKVRYNHAKA 205 (293)
T ss_dssp -CTTHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHHHH-hcCccccchHHHHHhHHHH
Confidence 22223457889999999999 99999999999994210 2222222223578899999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC
Q 008246 523 LCNVGRNAEAEKYLRLAAAHNP 544 (572)
Q Consensus 523 l~~~g~~eeA~~~l~~aL~l~P 544 (572)
|..+|++++|++++++++++.+
T Consensus 206 y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 206 LYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 138
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.20 E-value=4.7e-10 Score=110.80 Aligned_cols=153 Identities=10% Similarity=0.041 Sum_probs=122.6
Q ss_pred CCCHHHHHHHHHHHHh----cCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhcC
Q 008246 366 NLTPKELIALSVKFLS----KGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAG 437 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~----~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~----~g~~~eA~~~~~rAl~~l~~~~ 437 (572)
+.++.+++.+|..+.. .|++++|+.+|+++++.+ ++.+++.+|.+|.. .|++++|+++|++|++.
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----- 107 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----- 107 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-----
Confidence 4567889999999999 999999999999999986 89999999999999 99999999999999973
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHH----hhchhh-----HHHHHhhh-----hhHhhhhh----hccHHHHHHHHHHHhc
Q 008246 438 HPTEPEAIDLLIVASQWSGVACIR----QAAHNF-----FELVQQGQ-----LKLLSFVS----QEKWEEGIAHLERIGN 499 (572)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~~~~~----~g~~~~-----~~a~~~~~-----~~~~~~~~----~g~~~eAi~~l~kal~ 499 (572)
. + ..+++.+|.++.. .++.+. .++++.+. ..+.++.. .+++++|+++|+++++
T Consensus 108 ------~-~--~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 178 (273)
T 1ouv_A 108 ------K-Y--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD 178 (273)
T ss_dssp ------T-C--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ------C-C--ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 1 1 2467888999888 663331 22222221 12345666 8899999999999998
Q ss_pred CCCCCCCchhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 008246 500 LKEPEEPKSKAHYYDGLVVLASALCN----VGRNAEAEKYLRLAAAHNP 544 (572)
Q Consensus 500 l~~p~dp~~~~~~~~al~~Lg~~l~~----~g~~eeA~~~l~~aL~l~P 544 (572)
. +. ..++..+|.+|.. .+++++|+++|+++++.+|
T Consensus 179 ~----~~------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 179 L----KD------SPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp T----TC------HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred C----CC------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 3 21 2567889999999 9999999999999999987
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.19 E-value=4.5e-10 Score=95.41 Aligned_cols=116 Identities=25% Similarity=0.357 Sum_probs=96.0
Q ss_pred hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhh
Q 008246 398 KEPDN-INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQL 476 (572)
Q Consensus 398 ~dP~~-~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~ 476 (572)
.+|.+ +.+++.+|.++...|++++|+++|+++++. +|.+. .++..+|.++...|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~~la~~~~~~~------------- 57 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA-------EAWYNLGNAYYKQG------------- 57 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTT-------------
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCcH-------HHHHHHHHHHHHhC-------------
Confidence 46766 899999999999999999999999999985 45442 35778899999999
Q ss_pred hHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 477 KLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 477 ~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
++++|+..++++++ .+|.+. ..+..+|.++...|++++|..+++++++.+|++......+..
T Consensus 58 ---------~~~~A~~~~~~~~~----~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 119 (125)
T 1na0_A 58 ---------DYDEAIEYYQKALE----LDPNNA----EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 119 (125)
T ss_dssp ---------CHHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHH----hCCccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99999999999998 344332 456789999999999999999999999999999887766554
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.19 E-value=1.7e-10 Score=98.88 Aligned_cols=118 Identities=19% Similarity=0.227 Sum_probs=99.9
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhh
Q 008246 396 LNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQ 475 (572)
Q Consensus 396 L~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~ 475 (572)
.+.+|+++.+++.+|.++...|++++|+++|+++++. +|++. .++..+|.++...|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~-------~~~~~~a~~~~~~~------------ 60 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPANA-------VYFCNRAAAYSKLG------------ 60 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTT------------
T ss_pred hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCCH-------HHHHHHHHHHHHhh------------
Confidence 3456788999999999999999999999999999985 55542 46788899999999
Q ss_pred hhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 476 LKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 476 ~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
++++|++.++++++ .+|.+. .++..+|.++...|++++|.++|+++++.+|++...+..+..
T Consensus 61 ----------~~~~A~~~~~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 122 (131)
T 2vyi_A 61 ----------NYAGAVQDCERAIC----IDPAYS----KAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122 (131)
T ss_dssp ----------CHHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred ----------chHHHHHHHHHHHh----cCccCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 99999999999999 345432 566789999999999999999999999999998877665554
No 141
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.19 E-value=3.2e-10 Score=123.74 Aligned_cols=180 Identities=8% Similarity=0.005 Sum_probs=139.4
Q ss_pred hhhhccccCCCCHHHHHHHHHHHHh-------cCCcc-------cHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHH
Q 008246 357 AKQLKISVENLTPKELIALSVKFLS-------KGDKE-------RPIPLLQLALN-KEPDNINALILMGQTQLQKGLLEE 421 (572)
Q Consensus 357 ~~~~ai~~~~~~~~~~~~lA~~~~~-------~g~~~-------~A~~~l~~AL~-~dP~~~~a~~~LG~l~~~~g~~~e 421 (572)
.+++++...|.+++.++..|..+.. .|+++ +|+..|++|++ .+|++..+|..+|.++...|++++
T Consensus 260 ~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 260 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 3578889999999999999999986 79987 99999999998 899999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhh-----HHHHHhhhh-----hHhh---hhhhccHH
Q 008246 422 AVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNF-----FELVQQGQL-----KLLS---FVSQEKWE 488 (572)
Q Consensus 422 A~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~~~~-----~~~~---~~~~g~~~ 488 (572)
|.+.|++++++ +|.++ ..+|..+|..+.+.|..+. .++.+.... .... +...|+++
T Consensus 340 A~~~~~~al~~-----~p~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 340 VHSIYNRLLAI-----EDIDP------TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp HHHHHHHHHHS-----SSSCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHhCc-----cccCc------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChh
Confidence 99999999984 55442 1357778888877774332 222221111 1111 33588999
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHhccc
Q 008246 489 EGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN----ELLEQLEN 555 (572)
Q Consensus 489 eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~----~~l~~l~~ 555 (572)
+|...|+++++ .+|++. ..+..+|.++...|+.++|+..|++++...|... .++..+-+
T Consensus 409 ~A~~~~e~al~----~~p~~~----~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 409 VAFKIFELGLK----KYGDIP----EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHH----HHTTCH----HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHH----HCCCCH----HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 99999999998 345433 4667799999999999999999999999876543 36666555
No 142
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.19 E-value=3.7e-11 Score=122.04 Aligned_cols=145 Identities=15% Similarity=0.088 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~------~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
.+...|..+...|++++|+.+|++++++.++. +.++..+|.+|...|++++|+.+|++|+++. +... .
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-----~~~g-~ 111 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY-----VENG-T 111 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-----HTTT-C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-----HHcC-C
Confidence 34555788899999999999999999997643 6789999999999999999999999999851 1111 1
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHH
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 524 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~ 524 (572)
......++.++|.++.. | ++++|+++|++++++.. .. .+......++.++|.+|.
T Consensus 112 ~~~~a~~~~~lg~~~~~-g----------------------~~~~A~~~~~~Al~~~~-~~-~~~~~~~~~~~~lg~~~~ 166 (307)
T 2ifu_A 112 PDTAAMALDRAGKLMEP-L----------------------DLSKAVHLYQQAAAVFE-NE-ERLRQAAELIGKASRLLV 166 (307)
T ss_dssp HHHHHHHHHHHHHHHTT-T----------------------CHHHHHHHHHHHHHHHH-HT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-C----------------------CHHHHHHHHHHHHHHHH-hC-CChhHHHHHHHHHHHHHH
Confidence 22233567778888877 7 99999999999998421 11 111123467788999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC
Q 008246 525 NVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 525 ~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
.+|++++|+++|++++++.|+.
T Consensus 167 ~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 167 RQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999987643
No 143
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=9.9e-11 Score=121.92 Aligned_cols=153 Identities=8% Similarity=0.016 Sum_probs=115.0
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPD-------NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~-------~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~ 440 (572)
.++.++.+|..+...|++++|+.++++|++..++ .+.++..+|.+|...|++++|+++|++|+++. +.
T Consensus 140 ~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-----~~ 214 (378)
T 3q15_A 140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA-----MD 214 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-----HH
Confidence 4678999999999999999999999999987543 36688999999999999999999999999851 11
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhchhh-----HHHHHh-----h-------hhhHhhhhhhccHHHHHHHHHHHhcCCCC
Q 008246 441 EPEAIDLLIVASQWSGVACIRQAAHNF-----FELVQQ-----G-------QLKLLSFVSQEKWEEGIAHLERIGNLKEP 503 (572)
Q Consensus 441 ~~~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~-----~-------~~~~~~~~~~g~~~eAi~~l~kal~l~~p 503 (572)
.. +......++.++|.++..+|+.+. .++... . ...+.++...|++++|++++++++++.
T Consensus 215 ~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 291 (378)
T 3q15_A 215 IQ-NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI-- 291 (378)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred cC-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--
Confidence 11 122334578999999999996552 223221 1 123456888999999999999999942
Q ss_pred CCCchhhhhhHHHHHHHHHHHHcCCH
Q 008246 504 EEPKSKAHYYDGLVVLASALCNVGRN 529 (572)
Q Consensus 504 ~dp~~~~~~~~al~~Lg~~l~~~g~~ 529 (572)
....+ ..+...+..++.++...|+.
T Consensus 292 ~~~~~-~~~~~~~~~l~~ly~~~~~~ 316 (378)
T 3q15_A 292 TARSH-KFYKELFLFLQAVYKETVDE 316 (378)
T ss_dssp CTTCC-SCHHHHHHHHHHHHSSSCCH
T ss_pred HHcCC-HHHHHHHHHHHHHHhCCCcH
Confidence 22223 33445677888888888887
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.16 E-value=2e-10 Score=105.90 Aligned_cols=108 Identities=16% Similarity=0.165 Sum_probs=99.4
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhhhh
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT-QLQKGLL--EEAVEYLECAISKLFL 435 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l-~~~~g~~--~eA~~~~~rAl~~l~~ 435 (572)
..++..+|.+++.++.+|..+...|++++|+.+|+++++.+|+++.+++.+|.+ +...|++ ++|+.+|+++++.
T Consensus 34 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~--- 110 (177)
T 2e2e_A 34 QDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL--- 110 (177)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH---
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh---
Confidence 567788899999999999999999999999999999999999999999999999 8899999 9999999999986
Q ss_pred cCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcC
Q 008246 436 AGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNL 500 (572)
Q Consensus 436 ~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l 500 (572)
+|++. .+++.+|.++...| ++++|+..|++++++
T Consensus 111 --~p~~~-------~~~~~la~~~~~~g----------------------~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 111 --DSNEI-------TALMLLASDAFMQA----------------------NYAQAIELWQKVMDL 144 (177)
T ss_dssp --CTTCH-------HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHT
T ss_pred --CCCcH-------HHHHHHHHHHHHcc----------------------cHHHHHHHHHHHHhh
Confidence 66553 46788999999999 999999999999993
No 145
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.16 E-value=6.4e-11 Score=102.13 Aligned_cols=85 Identities=16% Similarity=0.252 Sum_probs=74.7
Q ss_pred hcCCcccHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHH
Q 008246 381 SKGDKERPIPLLQLALNK---EPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGV 457 (572)
Q Consensus 381 ~~g~~~~A~~~l~~AL~~---dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~ 457 (572)
..|++++|+.+|+++++. +|+++.+++.+|.+|...|++++|+++|++++++ +|+++ .+++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~~~~~l~~ 69 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-----FPNHQ-------ALRVFYAM 69 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCch-------HHHHHHHH
Confidence 468999999999999999 7999999999999999999999999999999986 66653 46788999
Q ss_pred HHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 458 ACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 458 ~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
++...| ++++|++.|+++++
T Consensus 70 ~~~~~g----------------------~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 70 VLYNLG----------------------RYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHT----------------------CHHHHHHHHHHHHH
T ss_pred HHHHcC----------------------CHHHHHHHHHHHHH
Confidence 999999 99999999999999
No 146
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.16 E-value=2.3e-10 Score=112.57 Aligned_cols=165 Identities=8% Similarity=-0.010 Sum_probs=121.3
Q ss_pred hhccccCCCC---HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC---HHHHHHHHHHHHH--------cCCHHHHHH
Q 008246 359 QLKISVENLT---PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN---INALILMGQTQLQ--------KGLLEEAVE 424 (572)
Q Consensus 359 ~~ai~~~~~~---~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~---~~a~~~LG~l~~~--------~g~~~eA~~ 424 (572)
...+..+|.+ +++++.+|..+...|++++|+..|+++++.+|++ +.+++.+|.++.. .|++++|+.
T Consensus 39 ~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~ 118 (261)
T 3qky_A 39 KAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIE 118 (261)
T ss_dssp HHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHH
T ss_pred HHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHH
Confidence 3455666666 8999999999999999999999999999998854 7899999999999 999999999
Q ss_pred HHHHHHHhhhhcCCCCChhhhhHH----------HHHHHHHHHHHHHhhchhh-----HHHHHhhh----------hhHh
Q 008246 425 YLECAISKLFLAGHPTEPEAIDLL----------IVASQWSGVACIRQAAHNF-----FELVQQGQ----------LKLL 479 (572)
Q Consensus 425 ~~~rAl~~l~~~~~P~~~~~~~~~----------~~a~~~lG~~~~~~g~~~~-----~~a~~~~~----------~~~~ 479 (572)
.|+++++. +|++....... ...++.+|.++.+.|+.+. .+++...+ ..+.
T Consensus 119 ~~~~~l~~-----~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~ 193 (261)
T 3qky_A 119 AFQLFIDR-----YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMR 193 (261)
T ss_dssp HHHHHHHH-----CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHH-----CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 99999986 77764221110 1123788999999995442 22222211 1234
Q ss_pred hhhhh----------ccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHH
Q 008246 480 SFVSQ----------EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAE 533 (572)
Q Consensus 480 ~~~~~----------g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~ 533 (572)
++... |++++|+..|+++++ .+|++.. ...+...++.++...|+++++.
T Consensus 194 ~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~----~~p~~~~-~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 194 AYIAYAEQSVRARQPERYRRAVELYERLLQ----IFPDSPL-LRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHTSCGGGHHHHHHHHHHHHHHHHH----HCTTCTH-HHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHhcccchhhcccchHHHHHHHHHHHHH----HCCCChH-HHHHHHHHHHHHHHHHHhhhhh
Confidence 55544 999999999999999 4454332 2356667888888777776654
No 147
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.15 E-value=1.2e-10 Score=122.02 Aligned_cols=125 Identities=16% Similarity=0.200 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALN----------------KEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~----------------~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
+..+..+|..+...|++++|+..|++|++ .+|.++.+++++|.+|...|++++|+++|++|+++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999999 88999999999999999999999999999999975
Q ss_pred hhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhh
Q 008246 433 LFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHY 512 (572)
Q Consensus 433 l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~ 512 (572)
+|++. .+++.+|.++..+| ++++|++.|+++++ .+|.+.
T Consensus 303 -----~p~~~-------~a~~~lg~~~~~~g----------------------~~~eA~~~l~~Al~----l~P~~~--- 341 (370)
T 1ihg_A 303 -----DPSNT-------KALYRRAQGWQGLK----------------------EYDQALADLKKAQE----IAPEDK--- 341 (370)
T ss_dssp -----CTTCH-------HHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH----HCTTCH---
T ss_pred -----CchhH-------HHHHHHHHHHHHcc----------------------CHHHHHHHHHHHHH----hCCCCH---
Confidence 55543 46889999999999 99999999999999 455443
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHH
Q 008246 513 YDGLVVLASALCNVGRNAEAEKY 535 (572)
Q Consensus 513 ~~al~~Lg~~l~~~g~~eeA~~~ 535 (572)
.++..++.++...+++++|.+.
T Consensus 342 -~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 342 -AIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999998888653
No 148
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.15 E-value=3.2e-10 Score=107.17 Aligned_cols=104 Identities=9% Similarity=0.071 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh-----
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP----- 442 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~----- 442 (572)
++..++.+|..+...|++++|+.+|+++++.+|+++.+++.+|.+|...|++++|+++|+++++. .|.+.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~ 110 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ-----LRGNQLIDYK 110 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TTTCSEEECG
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCccHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999985 44432
Q ss_pred -----hhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 443 -----EAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 443 -----~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
..+ ....+++++|.++...| ++++|++.|+++++
T Consensus 111 ~~~~~~~~-~~~~~~~~l~~~~~~~g----------------------~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 111 ILGLQFKL-FACEVLYNIAFMYAKKE----------------------EWKKAEEQLALATS 149 (213)
T ss_dssp GGTBCCEE-EHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHT
T ss_pred HhccccCc-cchHHHHHHHHHHHHcc----------------------CHHHHHHHHHHHHH
Confidence 011 12357888999999999 99999999999999
No 149
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.15 E-value=7.5e-11 Score=117.73 Aligned_cols=148 Identities=13% Similarity=0.041 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI------NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~------~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
...+..+|..+...|++++|+.+++++++..++.. .++..+|.++...|++++|++++++++++. +...
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~ 257 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA-----RQLK 257 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----HHTT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----Hhhc
Confidence 56789999999999999999999999998866543 399999999999999999999999999851 1111
Q ss_pred hhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHH
Q 008246 443 EAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA 522 (572)
Q Consensus 443 ~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~ 522 (572)
.......++..+|.++...| ++++|+..+++++++.. .. .+......++..+|.+
T Consensus 258 -~~~~~~~~~~~la~~~~~~g----------------------~~~~A~~~~~~a~~~~~-~~-~~~~~~~~~~~~la~~ 312 (338)
T 3ro2_A 258 -DRAVEAQSCYSLGNTYTLLQ----------------------DYEKAIDYHLKHLAIAQ-EL-KDRIGEGRACWSLGNA 312 (338)
T ss_dssp -CHHHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHHH-HH-TCHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHHHhc----------------------CHHHHHHHHHHHHHHHH-hc-CCcHHHHHHHHHHHHH
Confidence 12223456778888888888 99999999999987321 11 1112234567889999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 523 LCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 523 l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
+...|++++|.+++++++++.++.
T Consensus 313 ~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 313 YTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHcCChHHHHHHHHHHHHHHHhh
Confidence 999999999999999999988764
No 150
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.14 E-value=4.7e-10 Score=96.28 Aligned_cols=120 Identities=9% Similarity=0.094 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHh
Q 008246 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLL 479 (572)
Q Consensus 400 P~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~ 479 (572)
|+.+.+++.+|.++...|++++|+.+|+++++. +|.+. .++..+|.++...|
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~-------~~~~~la~~~~~~~---------------- 52 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNM-------TYITNQAAVYFEKG---------------- 52 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHT----------------
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCccH-------HHHHHHHHHHHHhc----------------
Confidence 345789999999999999999999999999985 55442 45788899999999
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 480 SFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 480 ~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
++++|+.++++++++. |.++........++..+|.++...|++++|.++|+++++.+|+ ......+..
T Consensus 53 ------~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~ 120 (131)
T 1elr_A 53 ------DYNKCRELCEKAIEVG-RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQ 120 (131)
T ss_dssp ------CHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred ------cHHHHHHHHHHHHhhc-cccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 9999999999999832 2222221112467788999999999999999999999999994 666655555
No 151
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.14 E-value=9.3e-11 Score=117.01 Aligned_cols=168 Identities=11% Similarity=-0.029 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDN----INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~----~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
...++..|..+...|++++|+.+|+++++.+|++ ..++..+|.++...|++++|+++++++++..... . +
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~---~ 78 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI---G---D 78 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---T---C
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---c---c
Confidence 4567778888888888888888888888888887 4677788888888888888888888887641111 1 1
Q ss_pred hhHHHHHHHHHHHHHHHhhchhh-----HHHHHhh-------------hhhHhhhhhhcc--------------------
Q 008246 445 IDLLIVASQWSGVACIRQAAHNF-----FELVQQG-------------QLKLLSFVSQEK-------------------- 486 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~~~-------------~~~~~~~~~~g~-------------------- 486 (572)
......++..+|.++...|+.+. .++.... ...+.++...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 22234567788888888885442 1121111 112345667778
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008246 487 WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 544 (572)
Q Consensus 487 ~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P 544 (572)
+++|++.+++++++... ..+......++..+|.++...|++++|+++++++++..+
T Consensus 159 ~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTA--LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 88888888888763110 011122334567788888888888888888888877654
No 152
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.12 E-value=4.9e-10 Score=112.46 Aligned_cols=105 Identities=16% Similarity=0.107 Sum_probs=93.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHh
Q 008246 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLL 479 (572)
Q Consensus 400 P~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~ 479 (572)
|+++.+++.+|..+...|++++|+.+|++|++. +|++. .+++++|.++...|
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~la~~~~~~~---------------- 52 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVA-------VYYTNRALCYLKMQ---------------- 52 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCCH-------HHHHHHHHHHHHTT----------------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCccH-------HHHHHHHHHHHHhc----------------
Confidence 678999999999999999999999999999986 66653 46788999999999
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 480 SFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 480 ~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
++++|++.++++++ .+|++. .++..+|.+|..+|++++|+++|+++++++|++
T Consensus 53 ------~~~~A~~~~~~al~----~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 53 ------QPEQALADCRRALE----LDGQSV----KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp ------CHHHHHHHHHHHTT----SCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ------CHHHHHHHHHHHHH----hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999 456543 567789999999999999999999999999965
No 153
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.12 E-value=4.7e-10 Score=112.69 Aligned_cols=146 Identities=13% Similarity=-0.025 Sum_probs=115.1
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNIN------ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~------a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
.+...+..+...|++++|+..++++++..+.++. .+..+|.++...|++++|+.+|++|+.. .+... +
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~-----~~~~~-~ 150 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ-----QLTGI-D 150 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT-----CCCCS-C
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-----hcccc-c
Confidence 4456688899999999999999999999887766 3346899999999999999999999984 22222 2
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHH
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 524 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~ 524 (572)
......++.++|.++...| ++++|+.+|+++++... ..+.+......++.++|.+|.
T Consensus 151 ~~~~~~~~~~lg~~y~~~g----------------------~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~nlg~~y~ 207 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENG----------------------YLKKGIDLFEQILKQLE-ALHDNEEFDVKVRYNHAKALY 207 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHHHH-hcccchhHHHHHHHHHHHHHH
Confidence 2222346888999999999 99999999999995211 111233345567889999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC
Q 008246 525 NVGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 525 ~~g~~eeA~~~l~~aL~l~P~ 545 (572)
.+|++++|++++++++++.++
T Consensus 208 ~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 208 LDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998654
No 154
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.08 E-value=2.1e-09 Score=96.68 Aligned_cols=109 Identities=14% Similarity=0.141 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhh
Q 008246 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSF 481 (572)
Q Consensus 402 ~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~ 481 (572)
.+..++.+|.++...|++++|+.+|+++++. +|.+. .++..+|.++...|
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~-------~~~~~~a~~~~~~~------------------ 61 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSNA-------IYYGNRSLAYLRTE------------------ 61 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH-------HHHHHHHHHHHHTT------------------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCh-------HHHHHHHHHHHHcC------------------
Confidence 4688999999999999999999999999985 55542 46788899999999
Q ss_pred hhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 008246 482 VSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQ 552 (572)
Q Consensus 482 ~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~ 552 (572)
++++|++.++++++ .+|.+. .++..+|.++...|++++|+++|+++++.+|++...+..
T Consensus 62 ----~~~~A~~~~~~a~~----~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 120 (166)
T 1a17_A 62 ----CYGYALGDATRAIE----LDKKYI----KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMK 120 (166)
T ss_dssp ----CHHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ----CHHHHHHHHHHHHH----hCcccH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999 455433 567789999999999999999999999999998776543
No 155
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.06 E-value=1.7e-09 Score=110.31 Aligned_cols=152 Identities=9% Similarity=-0.046 Sum_probs=117.2
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcC--CcccHHHHHHHHHhhCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHH
Q 008246 359 QLKISVENLTPKELIALSVKFLSKG--DKERPIPLLQLALNKEPDNINALILMGQTQ----LQK---GLLEEAVEYLECA 429 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g--~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~----~~~---g~~~eA~~~~~rA 429 (572)
..+|..+|.+..++...+..+...| ++++++.++++++..+|++..+|+..+.++ ... +++++++++++++
T Consensus 57 ~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~ 136 (306)
T 3dra_A 57 ELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAM 136 (306)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHH
T ss_pred HHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 4566777777777777777777777 777777777777777777777777777777 555 6777777777777
Q ss_pred HHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHH--HHHHHHHHHhcCCCCCCCc
Q 008246 430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWE--EGIAHLERIGNLKEPEEPK 507 (572)
Q Consensus 430 l~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~--eAi~~l~kal~l~~p~dp~ 507 (572)
++. +|.+. .+|.+.+.+..+.| +++ ++++.++++++ .||.
T Consensus 137 l~~-----~pkny-------~aW~~R~~vl~~l~----------------------~~~~~~EL~~~~~~i~----~d~~ 178 (306)
T 3dra_A 137 LSS-----DPKNH-------HVWSYRKWLVDTFD----------------------LHNDAKELSFVDKVID----TDLK 178 (306)
T ss_dssp HHH-----CTTCH-------HHHHHHHHHHHHTT----------------------CTTCHHHHHHHHHHHH----HCTT
T ss_pred HHh-----CCCCH-------HHHHHHHHHHHHhc----------------------ccChHHHHHHHHHHHH----hCCC
Confidence 764 55542 35677777777777 777 99999999999 5776
Q ss_pred hhhhhhHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHh
Q 008246 508 SKAHYYDGLVVLASALCNVGR------NAEAEKYLRLAAAHNPQYNELLEQ 552 (572)
Q Consensus 508 ~~~~~~~al~~Lg~~l~~~g~------~eeA~~~l~~aL~l~P~~~~~l~~ 552 (572)
+. .++...+.++...|+ ++++++++++++..+|++..++..
T Consensus 179 N~----sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y 225 (306)
T 3dra_A 179 NN----SAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNY 225 (306)
T ss_dssp CH----HHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred CH----HHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHH
Confidence 53 577789999999988 999999999999999999876543
No 156
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.06 E-value=1e-10 Score=98.44 Aligned_cols=90 Identities=8% Similarity=0.022 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~ 447 (572)
+++.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+++|++++++ +|++. ....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-----TSTAE-HVAI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CSSTT-SHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcc-HHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999975 66653 2222
Q ss_pred HHHHHHHHHHHHHHhh
Q 008246 448 LIVASQWSGVACIRQA 463 (572)
Q Consensus 448 ~~~a~~~lG~~~~~~g 463 (572)
...+++.+|.++...|
T Consensus 77 ~~~~~~~~~~~~~~~~ 92 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVG 92 (111)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456778888888888
No 157
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.06 E-value=1.9e-09 Score=103.35 Aligned_cols=134 Identities=11% Similarity=0.053 Sum_probs=111.3
Q ss_pred CCHHHHHHHHHHHHhcC----CcccHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhcCC
Q 008246 367 LTPKELIALSVKFLSKG----DKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 367 ~~~~~~~~lA~~~~~~g----~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~----~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
.++++++.+|..+.. | ++++|+.+|++|.+ ++++.+++.||.+|.. .+++++|+++|++|++. .
T Consensus 48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~ 119 (212)
T 3rjv_A 48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-----S 119 (212)
T ss_dssp TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-----T
T ss_pred CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-----C
Confidence 468999999999988 6 89999999999965 6899999999999998 99999999999999963 1
Q ss_pred CCChhhhhHHHHHHHHHHHHHHH----hhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhH
Q 008246 439 PTEPEAIDLLIVASQWSGVACIR----QAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYD 514 (572)
Q Consensus 439 P~~~~~~~~~~~a~~~lG~~~~~----~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~ 514 (572)
+. +....+++++|.++.. .+ ++++|+.+|++++++ +.++ .
T Consensus 120 ~~-----~~~~~a~~~Lg~~y~~g~g~~~----------------------d~~~A~~~~~~A~~~--~~~~-------~ 163 (212)
T 3rjv_A 120 ES-----DAAVDAQMLLGLIYASGVHGPE----------------------DDVKASEYFKGSSSL--SRTG-------Y 163 (212)
T ss_dssp TS-----HHHHHHHHHHHHHHHHTSSSSC----------------------CHHHHHHHHHHHHHT--SCTT-------H
T ss_pred CC-----cchHHHHHHHHHHHHcCCCCCC----------------------CHHHHHHHHHHHHHc--CCCH-------H
Confidence 11 0123578899999988 55 999999999999983 1222 4
Q ss_pred HHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCC
Q 008246 515 GLVVLASALCNV-G-----RNAEAEKYLRLAAAHNP 544 (572)
Q Consensus 515 al~~Lg~~l~~~-g-----~~eeA~~~l~~aL~l~P 544 (572)
++.+||.+|... | ++++|+.+|+++++...
T Consensus 164 a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 164 AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 677899999865 3 89999999999999853
No 158
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.06 E-value=1.4e-09 Score=112.40 Aligned_cols=148 Identities=14% Similarity=0.033 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-----NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~-----~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~ 443 (572)
.+.+...|..+...|++++|+.+++++++..|.+. .++..+|.++...|++++|.+++++++++ .+...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~- 87 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM-----ARQHD- 87 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HHHTT-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-----HHhcC-
Confidence 56678889999999999999999999999988663 37889999999999999999999999985 22111
Q ss_pred hhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCC-CCchhhhhhHHHHHHHHH
Q 008246 444 AIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPE-EPKSKAHYYDGLVVLASA 522 (572)
Q Consensus 444 ~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~-dp~~~~~~~~al~~Lg~~ 522 (572)
.......++.++|.++...| ++++|++.+++++++.... ++.+ .....++.++|.+
T Consensus 88 ~~~~~~~~~~~la~~~~~~G----------------------~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~ 144 (373)
T 1hz4_A 88 VWHYALWSLIQQSEILFAQG----------------------FLQTAWETQEKAFQLINEQHLEQL-PMHEFLVRIRAQL 144 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHHHHTTCTTS-THHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHHHHHHhccccC-cHHHHHHHHHHHH
Confidence 11122335677888888888 9999999999999742110 1000 1123456789999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Q 008246 523 LCNVGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 523 l~~~g~~eeA~~~l~~aL~l~P~ 545 (572)
+...|++++|.++++++++..+.
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 145 LWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHhcCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999875
No 159
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.04 E-value=8.2e-10 Score=120.52 Aligned_cols=171 Identities=11% Similarity=-0.085 Sum_probs=127.3
Q ss_pred hhccc-cCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q 008246 359 QLKIS-VENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-NALILMGQTQLQKGLLEEAVEYLECAISKLFLA 436 (572)
Q Consensus 359 ~~ai~-~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~-~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~ 436 (572)
.+++. ..|.+...++..|..+...|++++|+..|+++++.+|+++ .+|..+|.++.+.|++++|.+.|++|++.
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---- 385 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---- 385 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----
Confidence 46776 6788899999999999999999999999999999999996 69999999999999999999999999973
Q ss_pred CCCCChhhhhHHHHHHHHHHHH-HHHhhchh-----hHHHHHhhhh-------hHhhhhhhccHHHHHHHHHHHhcCCCC
Q 008246 437 GHPTEPEAIDLLIVASQWSGVA-CIRQAAHN-----FFELVQQGQL-------KLLSFVSQEKWEEGIAHLERIGNLKEP 503 (572)
Q Consensus 437 ~~P~~~~~~~~~~~a~~~lG~~-~~~~g~~~-----~~~a~~~~~~-------~~~~~~~~g~~~eAi~~l~kal~l~~p 503 (572)
.|... ..+...+.. +...|+.+ +.+++...+. .+..+.+.|+.++|...|++++.. .|
T Consensus 386 -~~~~~-------~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~-~~ 456 (530)
T 2ooe_A 386 -ARTRH-------HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS-GS 456 (530)
T ss_dssp -TTCCT-------HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS-CC
T ss_pred -cCCch-------HHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc-cC
Confidence 33321 112222322 22344322 2223333322 233456789999999999999983 33
Q ss_pred CCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008246 504 EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 504 ~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~ 545 (572)
.+|.. ....+...+......|+.+++.++++++++..|+
T Consensus 457 ~~~~~---~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 457 LPPEK---SGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp SCGGG---CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CCHHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 44432 2245556777888899999999999999999984
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.03 E-value=2.1e-09 Score=100.28 Aligned_cols=136 Identities=12% Similarity=0.021 Sum_probs=101.4
Q ss_pred HHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHH
Q 008246 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA 458 (572)
Q Consensus 379 ~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~ 458 (572)
++..|++++|++.++......+..+.++..+|.++...|++++|+.+|++++++. ... . .......++.++|.+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~-~---~~~~~~~~~~~l~~~ 75 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQA--QKS-G---DHTAEHRALHQVGMV 75 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HTT-C---CHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH--HHc-C---CcHHHHHHHHHHHHH
Confidence 3578999999996666555333789999999999999999999999999999852 111 1 122334578888999
Q ss_pred HHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008246 459 CIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRL 538 (572)
Q Consensus 459 ~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~ 538 (572)
+...| ++++|++.+++++++.. ..+++......++.++|.++...|++++|++++++
T Consensus 76 ~~~~g----------------------~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 76 ERMAG----------------------NWDAARRCFLEERELLA-SLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHTT----------------------CHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcC----------------------CHHHHHHHHHHHHHHHH-HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999 99999999999998421 12212212345678899999999999999999999
Q ss_pred HHHhC
Q 008246 539 AAAHN 543 (572)
Q Consensus 539 aL~l~ 543 (572)
+++..
T Consensus 133 al~~~ 137 (203)
T 3gw4_A 133 SLVYA 137 (203)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99764
No 161
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.03 E-value=1.6e-09 Score=119.84 Aligned_cols=154 Identities=6% Similarity=-0.076 Sum_probs=133.2
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCC----------cccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHH
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGD----------KERPIPLLQLALNKEPDNINALILMGQTQLQKG--LLEEAVEYL 426 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~----------~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g--~~~eA~~~~ 426 (572)
..++..+|.+..++...+..+...|+ +++|+++++++++.+|++..+|+..|.++.+.| ++++|++++
T Consensus 53 ~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~ 132 (567)
T 1dce_A 53 SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELC 132 (567)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred HHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHH
Confidence 46888999999999999999998888 899999999999999999999999999999999 779999999
Q ss_pred HHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCC
Q 008246 427 ECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEP 506 (572)
Q Consensus 427 ~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp 506 (572)
++++++ +|.+. .+|.+.|.+..+.| ..++++++.++++++ .+|
T Consensus 133 ~k~l~~-----d~~N~-------~aW~~R~~~l~~l~---------------------~~~~~el~~~~~~I~----~~p 175 (567)
T 1dce_A 133 ARFLEA-----DERNF-------HCWDYRRFVAAQAA---------------------VAPAEELAFTDSLIT----RNF 175 (567)
T ss_dssp HHHHHH-----CTTCH-------HHHHHHHHHHHHTC---------------------CCHHHHHHHHHTTTT----TTC
T ss_pred HHHHhh-----ccccc-------cHHHHHHHHHHHcC---------------------CChHHHHHHHHHHHH----HCC
Confidence 999986 55552 57888888887776 157999999999999 677
Q ss_pred chhhhhhHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 008246 507 KSKAHYYDGLVVLASALCNV--------------GRNAEAEKYLRLAAAHNPQYNELLEQL 553 (572)
Q Consensus 507 ~~~~~~~~al~~Lg~~l~~~--------------g~~eeA~~~l~~aL~l~P~~~~~l~~l 553 (572)
.+. .+|..+|.++... +++++|++++++|+..+|++..++...
T Consensus 176 ~n~----saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~ 232 (567)
T 1dce_A 176 SNY----SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH 232 (567)
T ss_dssp CCH----HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHH
T ss_pred CCc----cHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 654 5667788888875 668999999999999999998766643
No 162
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.02 E-value=4.5e-09 Score=110.07 Aligned_cols=122 Identities=12% Similarity=0.129 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh---------hhhhHHHHHHHHHHHHHHHhhchhhHHHHHh
Q 008246 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP---------EAIDLLIVASQWSGVACIRQAAHNFFELVQQ 473 (572)
Q Consensus 403 ~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~---------~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~ 473 (572)
+..+..+|..+...|++++|+++|++|++.. +..+ +..+....++.++|.++.++|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---------- 287 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV-----EGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS---------- 287 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-----hcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc----------
Confidence 4678999999999999999999999999731 1000 011122356788888888888
Q ss_pred hhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhc
Q 008246 474 GQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQL 553 (572)
Q Consensus 474 ~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l 553 (572)
++++|+++++++++ .+|.+. .++..+|.+|..+|++++|+++|+++++++|++...+..+
T Consensus 288 ------------~~~~A~~~~~~al~----~~p~~~----~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l 347 (370)
T 1ihg_A 288 ------------DWQGAVDSCLEALE----IDPSNT----KALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347 (370)
T ss_dssp ------------CHHHHHHHHHHHHT----TCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHH----hCchhH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999 456443 5677899999999999999999999999999999887777
Q ss_pred cccchH
Q 008246 554 ENNDEE 559 (572)
Q Consensus 554 ~~~~~~ 559 (572)
......
T Consensus 348 ~~~~~~ 353 (370)
T 1ihg_A 348 LKVKQK 353 (370)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 664433
No 163
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.01 E-value=2.3e-09 Score=91.88 Aligned_cols=105 Identities=22% Similarity=0.343 Sum_probs=93.0
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008246 361 KISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (572)
Q Consensus 361 ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~ 440 (572)
.+..++.++..++.+|..+...|++++|+.+++++++.+|++..+++.+|.++...|++++|++++++++.. .|.
T Consensus 27 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~ 101 (136)
T 2fo7_A 27 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPR 101 (136)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCC
Confidence 444456678889999999999999999999999999999999999999999999999999999999999985 454
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 441 EPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 441 ~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
+. .++..+|.++.+.| ++++|++.++++++
T Consensus 102 ~~-------~~~~~la~~~~~~~----------------------~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 102 SA-------EAWYNLGNAYYKQG----------------------DYDEAIEYYQKALE 131 (136)
T ss_dssp CH-------HHHHHHHHHHHTTT----------------------CHHHHHHHHHHHHH
T ss_pred Ch-------HHHHHHHHHHHHHc----------------------cHHHHHHHHHHHHc
Confidence 42 35677888888888 99999999999998
No 164
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.99 E-value=2.6e-09 Score=91.30 Aligned_cols=80 Identities=21% Similarity=0.206 Sum_probs=71.4
Q ss_pred ccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhch
Q 008246 386 ERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAH 465 (572)
Q Consensus 386 ~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~ 465 (572)
++|+..|+++++.+|+++.+++.+|.+|...|++++|+.+|++++++ +|++. .+++++|.++...|
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~~~~~la~~~~~~g-- 67 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-----DPTYS-------VAWKWLGKTLQGQG-- 67 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHHT--
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCcH-------HHHHHHHHHHHHcC--
Confidence 57899999999999999999999999999999999999999999985 55543 46788899999999
Q ss_pred hhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 466 NFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 466 ~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
++++|+..|+++++
T Consensus 68 --------------------~~~~A~~~~~~al~ 81 (115)
T 2kat_A 68 --------------------DRAGARQAWESGLA 81 (115)
T ss_dssp --------------------CHHHHHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHH
Confidence 99999999999998
No 165
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.99 E-value=1.9e-08 Score=102.24 Aligned_cols=184 Identities=13% Similarity=0.011 Sum_probs=133.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008246 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEP--DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP--~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~ 443 (572)
+.+...++.+|..+...|++++|++++++.+..+| ++.+++..+++++...|+.++|.+.+++..+. +|+...
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-----~~d~~~ 171 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-----IEDTVS 171 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SCHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----Cccccc
Confidence 34567778999999999999999999999999997 99999999999999999999999999998864 331000
Q ss_pred hhhHHHHHHHHH--HHHHHHhhchhh-------HHHHHhhh------hhHhhhhhhccHHHHHHHHHHHhcCCCCC----
Q 008246 444 AIDLLIVASQWS--GVACIRQAAHNF-------FELVQQGQ------LKLLSFVSQEKWEEGIAHLERIGNLKEPE---- 504 (572)
Q Consensus 444 ~~~~~~~a~~~l--G~~~~~~g~~~~-------~~a~~~~~------~~~~~~~~~g~~~eAi~~l~kal~l~~p~---- 504 (572)
..+ .....+ +.+....|..+. .+..+... ...+++..+|++++|.+.+++++++ .|.
T Consensus 172 ~~d---~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~-~p~~~~k 247 (310)
T 3mv2_B 172 GDN---EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD-YYSVEQK 247 (310)
T ss_dssp HHH---HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH-HHHTTTC
T ss_pred cch---HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh-ccccccc
Confidence 001 122333 333555553332 23322221 2334788999999999999987762 111
Q ss_pred ---CCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccccchHHhhhhhh
Q 008246 505 ---EPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEEFVSDLSS 566 (572)
Q Consensus 505 ---dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~~~~~~~~~~~~ 566 (572)
+|++ .+++.+++.+...+|+ +|.++++++.+.+|++......-++ +.+| ++++.
T Consensus 248 ~~~~p~~----~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k-~~~F-d~~~~ 304 (310)
T 3mv2_B 248 ENAVLYK----PTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEI-DAKF-DELVR 304 (310)
T ss_dssp HHHHSSH----HHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHH-HHHH-HHHHH
T ss_pred ccCCCCC----HHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHH-HHHH-HHHHH
Confidence 2433 3567778888888997 9999999999999999987777777 6666 33443
No 166
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.99 E-value=9.9e-11 Score=121.02 Aligned_cols=126 Identities=18% Similarity=0.205 Sum_probs=87.4
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh----------hhHHHHHHHHHHHHHHHhhc
Q 008246 395 ALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA----------IDLLIVASQWSGVACIRQAA 464 (572)
Q Consensus 395 AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~----------~~~~~~a~~~lG~~~~~~g~ 464 (572)
.++..++.+..+..+|..+...|++++|+.+|++|++. .|++... ......+++++|.++.++|
T Consensus 171 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-----~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g- 244 (338)
T 2if4_A 171 TVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAY-----MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLK- 244 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH-----SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTT-
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 33445666888999999999999999999999999985 3332100 0000125666777777777
Q ss_pred hhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008246 465 HNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 544 (572)
Q Consensus 465 ~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P 544 (572)
++++|+.+|+++++ .+|.+. .+++.+|.+|..+|++++|+++|+++++++|
T Consensus 245 ---------------------~~~~A~~~~~~al~----~~p~~~----~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 245 ---------------------RYDEAIGHCNIVLT----EEEKNP----KALFRRGKAKAELGQMDSARDDFRKAQKYAP 295 (338)
T ss_dssp ---------------------CCHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred ---------------------CHHHHHHHHHHHHH----hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 99999999999999 456443 5677899999999999999999999999999
Q ss_pred CCHHHHHhccc
Q 008246 545 QYNELLEQLEN 555 (572)
Q Consensus 545 ~~~~~l~~l~~ 555 (572)
++...+..+..
T Consensus 296 ~~~~a~~~L~~ 306 (338)
T 2if4_A 296 DDKAIRRELRA 306 (338)
T ss_dssp -----------
T ss_pred CCHHHHHHHHH
Confidence 98877766655
No 167
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.97 E-value=7.2e-10 Score=101.40 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=74.3
Q ss_pred hhhhccccCCCCHHHHHHHHHHHHhcCCcc----------cHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---------
Q 008246 357 AKQLKISVENLTPKELIALSVKFLSKGDKE----------RPIPLLQLALNKEPDNINALILMGQTQLQKG--------- 417 (572)
Q Consensus 357 ~~~~ai~~~~~~~~~~~~lA~~~~~~g~~~----------~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g--------- 417 (572)
.+..++..+|.+++.++.+|..+.+.|+++ +|+..|++||++||+++++|+++|.+|...|
T Consensus 24 ~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a 103 (158)
T 1zu2_A 24 DAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEA 103 (158)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhh
Confidence 447899999999999999999999998865 9999999999999999999999999999875
Q ss_pred --CHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 418 --LLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 418 --~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
++++|+++|++|+++ +|++.
T Consensus 104 ~g~~~eA~~~~~kAl~l-----~P~~~ 125 (158)
T 1zu2_A 104 KHNFDLATQFFQQAVDE-----QPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHH-----CTTCH
T ss_pred hccHHHHHHHHHHHHHh-----CCCCH
Confidence 899999999999997 77653
No 168
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.94 E-value=1.5e-09 Score=93.39 Aligned_cols=98 Identities=21% Similarity=0.150 Sum_probs=77.6
Q ss_pred HcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHH
Q 008246 415 QKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHL 494 (572)
Q Consensus 415 ~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l 494 (572)
..|++++|+.+|++|+++ .+.+ +....++.++|.++...| ++++|+++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~----p~~~~~~~~lg~~~~~~~----------------------~~~~A~~~~ 50 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQG----KDLAECYLGLGSTFRTLG----------------------EYRKAEAVL 50 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCH----HHHHHHHHHHHHHHHHTT----------------------CHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCC----ccHHHHHHHHHHHHHHcC----------------------CHHHHHHHH
Confidence 468999999999999963 2222 223467899999999999 999999999
Q ss_pred HHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008246 495 ERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLE 551 (572)
Q Consensus 495 ~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~ 551 (572)
+++++ .+|++. .++..+|.++...|++++|+++++++++.+|++.....
T Consensus 51 ~~al~----~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 51 ANGVK----QFPNHQ----ALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHH----HCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHH----hCCCch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999 456543 56778999999999999999999999999999876543
No 169
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.94 E-value=8.6e-09 Score=106.59 Aligned_cols=154 Identities=6% Similarity=-0.036 Sum_probs=101.6
Q ss_pred cCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHH
Q 008246 382 KGDKERPIPLLQLALNKEPDNINALILMGQTQLQKG-LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACI 460 (572)
Q Consensus 382 ~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g-~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~ 460 (572)
.+..++|+++++++|.+||++..+|+..|.++...| +++++++++++++.. +|++. .+|+..+.++.
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~-----nPKny-------~aW~hR~wlL~ 134 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ-----NLKSY-------QVWHHRLLLLD 134 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-----TCCCH-------HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----CCCcH-------HHHHHHHHHHH
Confidence 344456777777777777777777777777777777 477777777777764 66653 35666666666
Q ss_pred Hh-h-chh-----hHHHHHhhhhhHh-------hhhhhccHH--------HHHHHHHHHhcCCCCCCCchhhhhhHHHHH
Q 008246 461 RQ-A-AHN-----FFELVQQGQLKLL-------SFVSQEKWE--------EGIAHLERIGNLKEPEEPKSKAHYYDGLVV 518 (572)
Q Consensus 461 ~~-g-~~~-----~~~a~~~~~~~~~-------~~~~~g~~~--------eAi~~l~kal~l~~p~dp~~~~~~~~al~~ 518 (572)
.. + ..+ +..+++.+...-. ++...|+++ ++++.++++++ .||.+. .++..
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~----~dp~N~----SAW~~ 206 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR----VDGRNN----SAWGW 206 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH----HCTTCH----HHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH----hCCCCH----HHHHH
Confidence 55 3 111 0111111111111 122233555 99999999999 567653 57778
Q ss_pred HHHHHHHcCC-------HHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 519 LASALCNVGR-------NAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 519 Lg~~l~~~g~-------~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
.+.++...|+ ++++++++++++..+|++..++..+..
T Consensus 207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~ 250 (349)
T 3q7a_A 207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRG 250 (349)
T ss_dssp HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999987 799999999999999999876655433
No 170
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.93 E-value=1.5e-08 Score=109.28 Aligned_cols=164 Identities=8% Similarity=0.009 Sum_probs=121.1
Q ss_pred CCHHHHHHHHHHHHh----cCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhhhhcC
Q 008246 367 LTPKELIALSVKFLS----KGDKERPIPLLQLALNKEPDNINALILMGQTQLQK-----GLLEEAVEYLECAISKLFLAG 437 (572)
Q Consensus 367 ~~~~~~~~lA~~~~~----~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~-----g~~~eA~~~~~rAl~~l~~~~ 437 (572)
.+++.++.+|..+.. .+++++|+.+|+++++. +++++++.+|.+|... +++++|+.+|++|++.
T Consensus 253 ~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----- 325 (490)
T 2xm6_A 253 GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----- 325 (490)
T ss_dssp TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-----
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-----
Confidence 457788888888888 88888888888888765 6788888888888887 8888888888888862
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHhhch-hhHHHHHhhh------------hhHhhhhh----hccHHHHHHHHHHHhcC
Q 008246 438 HPTEPEAIDLLIVASQWSGVACIRQAAH-NFFELVQQGQ------------LKLLSFVS----QEKWEEGIAHLERIGNL 500 (572)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~~~~~~g~~-~~~~a~~~~~------------~~~~~~~~----~g~~~eAi~~l~kal~l 500 (572)
. + ..+++++|.++...|.. +..+++.... ..+..+.. .+++++|+++|+++++.
T Consensus 326 ------~-~--~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 326 ------G-D--ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp ------T-C--HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred ------C-C--HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 1 1 13577788888775421 2222222111 12234555 67999999999999983
Q ss_pred CCCCCCchhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC---CHHHHHhcccc
Q 008246 501 KEPEEPKSKAHYYDGLVVLASALCN----VGRNAEAEKYLRLAAAHNPQ---YNELLEQLENN 556 (572)
Q Consensus 501 ~~p~dp~~~~~~~~al~~Lg~~l~~----~g~~eeA~~~l~~aL~l~P~---~~~~l~~l~~~ 556 (572)
.+ ..++..||.+|.. .+++++|.++|+++++.+|+ +......+...
T Consensus 397 ---~~-------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 397 ---GL-------SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp ---TC-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred ---CC-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 22 2577889999999 89999999999999999954 66666655553
No 171
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.93 E-value=5.5e-09 Score=84.34 Aligned_cols=84 Identities=27% Similarity=0.404 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDL 447 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~ 447 (572)
++..++.+|..+...|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+.+|++++++ +|++.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~----- 77 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA----- 77 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-----
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CCCCH-----
Confidence 46789999999999999999999999999999999999999999999999999999999999986 66553
Q ss_pred HHHHHHHHHHHHHHhh
Q 008246 448 LIVASQWSGVACIRQA 463 (572)
Q Consensus 448 ~~~a~~~lG~~~~~~g 463 (572)
.++..+|.++.+.|
T Consensus 78 --~~~~~l~~~~~~~g 91 (91)
T 1na3_A 78 --EAKQNLGNAKQKQG 91 (91)
T ss_dssp --HHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHhcC
Confidence 35677888777654
No 172
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.92 E-value=8.9e-09 Score=106.26 Aligned_cols=145 Identities=16% Similarity=0.069 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChh
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNI------NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPE 443 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~------~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~ 443 (572)
..+..+|..+...|++++|+..++++++..|+.. .++..+|.++...|++++|+++|+++++.....+.+..
T Consensus 54 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~-- 131 (373)
T 1hz4_A 54 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL-- 131 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS--
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC--
Confidence 4678899999999999999999999999876542 44788999999999999999999999985211111111
Q ss_pred hhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHH
Q 008246 444 AIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASAL 523 (572)
Q Consensus 444 ~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l 523 (572)
+....++.++|.++...| ++++|+.++++++++.....+ . ....++..+|.++
T Consensus 132 --~~~~~~~~~la~~~~~~g----------------------~~~~A~~~~~~al~~~~~~~~--~-~~~~~~~~la~~~ 184 (373)
T 1hz4_A 132 --PMHEFLVRIRAQLLWAWA----------------------RLDEAEASARSGIEVLSSYQP--Q-QQLQCLAMLIQCS 184 (373)
T ss_dssp --THHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHTTTSCG--G-GGHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHHhc----------------------CHHHHHHHHHHHHHHhhccCc--H-HHHHHHHHHHHHH
Confidence 123346777899999999 999999999999985321111 1 1335678899999
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 008246 524 CNVGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 524 ~~~g~~eeA~~~l~~aL~l~ 543 (572)
...|++++|..++++++++.
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLL 204 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999874
No 173
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.91 E-value=5.7e-09 Score=113.26 Aligned_cols=149 Identities=15% Similarity=0.077 Sum_probs=114.0
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNK-----EPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~-----dP~~---~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
..++.+..+..+|++++|+..|+++|++ .|+| +..+.+||.+|..+|++++|+.++++++++....-.|+++
T Consensus 311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 4566777788999999999999999985 3555 5778899999999999999999999999852111123332
Q ss_pred hhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCC----CCCCCchhhhhhHHHHH
Q 008246 443 EAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLK----EPEEPKSKAHYYDGLVV 518 (572)
Q Consensus 443 ~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~----~p~dp~~~~~~~~al~~ 518 (572)
.....+.++|.+|..+| ++++|+..|++|+++. .|++|. ..+...+
T Consensus 391 ----~~a~~l~nLa~~~~~~G----------------------~~~eA~~~~~~Al~i~~~~lG~~Hp~----~~~~~~~ 440 (490)
T 3n71_A 391 ----QLGMAVMRAGLTNWHAG----------------------HIEVGHGMICKAYAILLVTHGPSHPI----TKDLEAM 440 (490)
T ss_dssp ----HHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHHHHHTCTTSHH----HHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHHHHHHHhCCCChH----HHHHHHH
Confidence 33457889999999999 9999999999998521 234443 3356678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008246 519 LASALCNVGRNAEAEKYLRLAAAHNPQYNEL 549 (572)
Q Consensus 519 Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~ 549 (572)
++.++.++|++++|+..|+++.+..-+++..
T Consensus 441 l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~ 471 (490)
T 3n71_A 441 RMQTEMELRMFRQNEFMYHKMREAALNNQPM 471 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999987655444433
No 174
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.91 E-value=2e-08 Score=103.20 Aligned_cols=150 Identities=7% Similarity=-0.068 Sum_probs=129.3
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCC----------cccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Q 008246 360 LKISVENLTPKELIALSVKFLSKGD----------KERPIPLLQLALNKEPDNINALILMGQTQLQKGL--LEEAVEYLE 427 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~----------~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~--~~eA~~~~~ 427 (572)
..+..+|.+..++...+..+...|+ +++++.++++++..+|++..+|+..+.++...|+ +++++++++
T Consensus 55 ~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 134 (331)
T 3dss_A 55 QILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCA 134 (331)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred HHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHH
Confidence 5778888888899888888876665 6899999999999999999999999999999994 899999999
Q ss_pred HHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhcc-HHHHHHHHHHHhcCCCCCCC
Q 008246 428 CAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEK-WEEGIAHLERIGNLKEPEEP 506 (572)
Q Consensus 428 rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~-~~eAi~~l~kal~l~~p~dp 506 (572)
+++++ +|.+. .+|.+.+.+....| + ++++++.++++++ .+|
T Consensus 135 k~l~~-----dprNy-------~AW~~R~~vl~~l~----------------------~~~~eel~~~~~~I~----~~p 176 (331)
T 3dss_A 135 RFLEA-----DERNF-------HCWDYRRFVAAQAA----------------------VAPAEELAFTDSLIT----RNF 176 (331)
T ss_dssp HHHHH-----CTTCH-------HHHHHHHHHHHHTT----------------------CCHHHHHHHHHHHHH----HCS
T ss_pred HHHHh-----CCCCH-------HHHHHHHHHHHHhC----------------------cCHHHHHHHHHHHHH----HCC
Confidence 99986 66553 57888999998888 7 6999999999999 577
Q ss_pred chhhhhhHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHH
Q 008246 507 KSKAHYYDGLVVLASALCNV--------------GRNAEAEKYLRLAAAHNPQYNELLE 551 (572)
Q Consensus 507 ~~~~~~~~al~~Lg~~l~~~--------------g~~eeA~~~l~~aL~l~P~~~~~l~ 551 (572)
.+. .+|..++.++... +.++++++++++++..+|++..++.
T Consensus 177 ~N~----SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~ 231 (331)
T 3dss_A 177 SNY----SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF 231 (331)
T ss_dssp CCH----HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred CCH----HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 654 4666788888777 5689999999999999999987664
No 175
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.90 E-value=2.9e-08 Score=101.14 Aligned_cols=140 Identities=9% Similarity=0.038 Sum_probs=116.6
Q ss_pred HHHHHHHHhcCCcc-cHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008246 373 IALSVKFLSKGDKE-RPIPLLQLALNKEPDNINALILMGQTQLQKG--LLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (572)
Q Consensus 373 ~~lA~~~~~~g~~~-~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g--~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~ 449 (572)
..........|++. +|+.++.++|.+||++..+|+..|.++...| +++++++++++++.. +|.+.
T Consensus 36 ~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~-----nPk~y------- 103 (306)
T 3dra_A 36 MGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD-----NEKNY------- 103 (306)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-----CTTCC-------
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH-----CcccH-------
Confidence 34444445667765 7999999999999999999999999999999 999999999999986 77764
Q ss_pred HHHHHHHHHH----HHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHH
Q 008246 450 VASQWSGVAC----IRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN 525 (572)
Q Consensus 450 ~a~~~lG~~~----~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~ 525 (572)
.+|++.+.++ ...+ ..++++++++.++++++ .+|++ +.++...+.++..
T Consensus 104 ~aW~~R~~iL~~~~~~l~-------------------~~~~~~~EL~~~~~~l~----~~pkn----y~aW~~R~~vl~~ 156 (306)
T 3dra_A 104 QIWNYRQLIIGQIMELNN-------------------NDFDPYREFDILEAMLS----SDPKN----HHVWSYRKWLVDT 156 (306)
T ss_dssp HHHHHHHHHHHHHHHHTT-------------------TCCCTHHHHHHHHHHHH----HCTTC----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-------------------ccCCHHHHHHHHHHHHH----hCCCC----HHHHHHHHHHHHH
Confidence 4677888877 3331 01388999999999999 67764 4678889999999
Q ss_pred cCCHH--HHHHHHHHHHHhCCCCHHHHH
Q 008246 526 VGRNA--EAEKYLRLAAAHNPQYNELLE 551 (572)
Q Consensus 526 ~g~~e--eA~~~l~~aL~l~P~~~~~l~ 551 (572)
.|+++ +++++++++++.||.+..++.
T Consensus 157 l~~~~~~~EL~~~~~~i~~d~~N~sAW~ 184 (306)
T 3dra_A 157 FDLHNDAKELSFVDKVIDTDLKNNSAWS 184 (306)
T ss_dssp TTCTTCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hcccChHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999 999999999999999887654
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.90 E-value=4.8e-09 Score=113.60 Aligned_cols=104 Identities=14% Similarity=0.096 Sum_probs=88.7
Q ss_pred hhhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcC
Q 008246 358 KQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAG 437 (572)
Q Consensus 358 ~~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~ 437 (572)
+.++++.+|.++..+..+|..+...|++++|+++|++|++++|+++.+++.+|.+|...|++++|+++|++|+++
T Consensus 29 ~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----- 103 (477)
T 1wao_1 29 YSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV----- 103 (477)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 467888999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCChhhhhHHHHHHHHHHHH--HHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHH
Q 008246 438 HPTEPEAIDLLIVASQWSGVA--CIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLE 495 (572)
Q Consensus 438 ~P~~~~~~~~~~~a~~~lG~~--~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~ 495 (572)
+|++. .++..++.+ +.++| ++++|++.++
T Consensus 104 ~p~~~-------~~~~~l~~~~~~~~~g----------------------~~~~A~~~~~ 134 (477)
T 1wao_1 104 KPHDK-------DAKMKYQECNKIVKQK----------------------AFERAIAGDE 134 (477)
T ss_dssp STTCT-------THHHHHHHHHHHHHHH----------------------HHCCC-----
T ss_pred CCCCH-------HHHHHHHHHHHHHHHH----------------------HHHHHhcccc
Confidence 66654 235556666 66777 9999999999
No 177
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.89 E-value=3.7e-08 Score=106.27 Aligned_cols=160 Identities=14% Similarity=0.058 Sum_probs=121.4
Q ss_pred CCCCHHHHHHHHHHHHh----cCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhc
Q 008246 365 ENLTPKELIALSVKFLS----KGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLA 436 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~----~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~----~g~~~eA~~~~~rAl~~l~~~ 436 (572)
+..++++++.+|..+.. .+++++|+.+|+++++. +++.+++.||.+|.. .+++++|+++|++|++.
T Consensus 35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---- 108 (490)
T 2xm6_A 35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK---- 108 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----
Confidence 35578999999999998 89999999999999986 789999999999999 99999999999999862
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHHH----hhchhhHHHHHhhh------------hhHhhhhh----hccHHHHHHHHHH
Q 008246 437 GHPTEPEAIDLLIVASQWSGVACIR----QAAHNFFELVQQGQ------------LKLLSFVS----QEKWEEGIAHLER 496 (572)
Q Consensus 437 ~~P~~~~~~~~~~~a~~~lG~~~~~----~g~~~~~~a~~~~~------------~~~~~~~~----~g~~~eAi~~l~k 496 (572)
.+ ..+++.+|.++.. .+ ++.+++...+ ..+.+|.. .+++++|+++|++
T Consensus 109 ---~~-------~~a~~~Lg~~y~~g~g~~~--~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 176 (490)
T 2xm6_A 109 ---GL-------PQAQQNLGVMYHEGNGVKV--DKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSK 176 (490)
T ss_dssp ---TC-------HHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred ---CC-------HHHHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 11 2467788888876 33 3333322211 12334554 6789999999999
Q ss_pred HhcCCCCCCCchhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHhcc
Q 008246 497 IGNLKEPEEPKSKAHYYDGLVVLASALCN----VGRNAEAEKYLRLAAAHNPQYNELLEQLE 554 (572)
Q Consensus 497 al~l~~p~dp~~~~~~~~al~~Lg~~l~~----~g~~eeA~~~l~~aL~l~P~~~~~l~~l~ 554 (572)
+++. .+ ..++..||.+|.. .+++++|.++|+++++.+ +......+.
T Consensus 177 a~~~---~~-------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 226 (490)
T 2xm6_A 177 AAEQ---GN-------VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHLA 226 (490)
T ss_dssp HHHT---TC-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHC---CC-------HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 9983 22 2577789999999 899999999999998864 344444433
No 178
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.88 E-value=3.6e-08 Score=101.33 Aligned_cols=164 Identities=7% Similarity=-0.044 Sum_probs=126.9
Q ss_pred hccccCCCCHHHHHHHHHHHHhcCC--cccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhhc
Q 008246 360 LKISVENLTPKELIALSVKFLSKGD--KERPIPLLQLALNKEPDNINALILMGQTQLQKGL-LEEAVEYLECAISKLFLA 436 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~~g~--~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~-~~eA~~~~~rAl~~l~~~ 436 (572)
..+..+|.+..++...+.++...|+ +++++.++.++++.||+|..||...+.+....|+ +++++++++++++.
T Consensus 99 ~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---- 174 (331)
T 3dss_A 99 SCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---- 174 (331)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----
T ss_pred HHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH----
Confidence 4677889999999999999998884 7899999999999999999999999999999999 69999999999986
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHH
Q 008246 437 GHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL 516 (572)
Q Consensus 437 ~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al 516 (572)
+|.+. .+|.+.+.++...+..... ....-...+.++++++++++++. .+|++.. +|
T Consensus 175 -~p~N~-------SAW~~R~~ll~~l~~~~~~--------~~~~~~~~~~~~eEle~~~~ai~----~~P~d~S----aW 230 (331)
T 3dss_A 175 -NFSNY-------SSWHYRSCLLPQLHPQPDS--------GPQGRLPENVLLKELELVQNAFF----TDPNDQS----AW 230 (331)
T ss_dssp -CSCCH-------HHHHHHHHHHHHHSCCC--------------CCCHHHHHHHHHHHHHHHH----HSTTCHH----HH
T ss_pred -CCCCH-------HHHHHHHHHHHHhhhcccc--------ccccccchHHHHHHHHHHHHHHH----hCCCCHH----HH
Confidence 66663 5788888888777300000 00000112378999999999999 5666543 44
Q ss_pred HHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHH
Q 008246 517 VVLASALCNV-----------GRNAEAEKYLRLAAAHNPQYNELLE 551 (572)
Q Consensus 517 ~~Lg~~l~~~-----------g~~eeA~~~l~~aL~l~P~~~~~l~ 551 (572)
..+..++... +.+++++++++++++.+|+++..+.
T Consensus 231 ~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 231 FYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp HHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 4454455444 4589999999999999999976443
No 179
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.88 E-value=1.6e-08 Score=97.40 Aligned_cols=112 Identities=15% Similarity=0.038 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhh
Q 008246 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSF 481 (572)
Q Consensus 402 ~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~ 481 (572)
.+.+++.+|..+...|++++|+..|+++++. .|.++ ....+++++|.++.+.|
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~----~~~~a~~~lg~~~~~~~------------------ 55 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGP----YSQQVQLDLIYAYYKNA------------------ 55 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTST----THHHHHHHHHHHHHHTT------------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCh----HHHHHHHHHHHHHHhcC------------------
Confidence 5789999999999999999999999999985 66553 12346889999999999
Q ss_pred hhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhC
Q 008246 482 VSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN------------------VGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 482 ~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~------------------~g~~eeA~~~l~~aL~l~ 543 (572)
++++|++.|+++++ .+|++.. ...++..+|.++.. .|++++|+..|+++++.+
T Consensus 56 ----~~~~A~~~~~~~l~----~~P~~~~-~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 126 (225)
T 2yhc_A 56 ----DLPLAQAAIDRFIR----LNPTHPN-IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY 126 (225)
T ss_dssp ----CHHHHHHHHHHHHH----HCTTCTT-HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC
T ss_pred ----CHHHHHHHHHHHHH----HCcCCCc-HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC
Confidence 99999999999999 3444322 12466778888876 679999999999999999
Q ss_pred CCCHHH
Q 008246 544 PQYNEL 549 (572)
Q Consensus 544 P~~~~~ 549 (572)
|+....
T Consensus 127 P~~~~a 132 (225)
T 2yhc_A 127 PNSQYT 132 (225)
T ss_dssp TTCTTH
T ss_pred cCChhH
Confidence 998643
No 180
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.85 E-value=7.1e-09 Score=86.89 Aligned_cols=68 Identities=16% Similarity=0.282 Sum_probs=64.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
+|.++..++.+|..+...|++++|+.+|+++++.+|+++.+|+.+|.+|...|++++|+++|++++++
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57789999999999999999999999999999999999999999999999999999999999999975
No 181
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.80 E-value=3.8e-08 Score=101.80 Aligned_cols=147 Identities=18% Similarity=0.120 Sum_probs=106.1
Q ss_pred ccCCCCHHHHHHHHHHHHhcCC---cccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhh-h
Q 008246 363 SVENLTPKELIALSVKFLSKGD---KERPIPLLQLALNKEPDNINALILMGQTQLQKGL----LEEAVEYLECAISKL-F 434 (572)
Q Consensus 363 ~~~~~~~~~~~~lA~~~~~~g~---~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~----~~eA~~~~~rAl~~l-~ 434 (572)
.+++.++..++..|..++..++ +.+|+.+|++|+++||+++.+|..++.+|..... .......++++++.. .
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 4556677788999999887655 4789999999999999999999999988853211 112222222332210 0
Q ss_pred hcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhH
Q 008246 435 LAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYD 514 (572)
Q Consensus 435 ~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~ 514 (572)
...+|.+ ..++..++..+...| ++++|+..+++++++ +|. ..
T Consensus 270 ~~~~~~~-------a~~~~alal~~l~~g----------------------d~d~A~~~l~rAl~L----n~s-----~~ 311 (372)
T 3ly7_A 270 LPELNNL-------SIIYQIKAVSALVKG----------------------KTDESYQAINTGIDL----EMS-----WL 311 (372)
T ss_dssp CGGGTTC-------HHHHHHHHHHHHHHT----------------------CHHHHHHHHHHHHHH----CCC-----HH
T ss_pred cccCCcC-------HHHHHHHHHHHHhCC----------------------CHHHHHHHHHHHHhc----CCC-----HH
Confidence 1112222 234555666676677 999999999999995 342 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008246 515 GLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 515 al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~ 547 (572)
++..+|.++...|++++|.+.|++|++++|...
T Consensus 312 a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 312 NYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 567899999999999999999999999999875
No 182
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.79 E-value=5.6e-08 Score=107.51 Aligned_cols=138 Identities=10% Similarity=0.072 Sum_probs=116.4
Q ss_pred HHHHHhcCCcc-cHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 376 SVKFLSKGDKE-RPIPLLQLALNKEPDNINALILMGQTQLQKGL----------LEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 376 A~~~~~~g~~~-~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~----------~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
.......|+++ +|++.++++++.+|++..+|+..|.++...|+ +++|+++++++++. +|++.
T Consensus 35 ~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-----~pK~y-- 107 (567)
T 1dce_A 35 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-----NPKSY-- 107 (567)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-----CTTCH--
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-----CCCCH--
Confidence 33445667666 57999999999999999999999999999998 99999999999986 66663
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHH
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 524 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~ 524 (572)
.+|++.|.++.+.| ..++++|++.++++++ .||++ +.+|...+.++.
T Consensus 108 -----~aW~hR~w~l~~l~--------------------~~~~~~el~~~~k~l~----~d~~N----~~aW~~R~~~l~ 154 (567)
T 1dce_A 108 -----GTWHHRCWLLSRLP--------------------EPNWARELELCARFLE----ADERN----FHCWDYRRFVAA 154 (567)
T ss_dssp -----HHHHHHHHHHHTCS--------------------SCCHHHHHHHHHHHHH----HCTTC----HHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHcc--------------------cccHHHHHHHHHHHHh----hcccc----ccHHHHHHHHHH
Confidence 57888888888777 0144999999999999 57764 367788999999
Q ss_pred HcC-CHHHHHHHHHHHHHhCCCCHHHHHhc
Q 008246 525 NVG-RNAEAEKYLRLAAAHNPQYNELLEQL 553 (572)
Q Consensus 525 ~~g-~~eeA~~~l~~aL~l~P~~~~~l~~l 553 (572)
..| ++++++++++++++.+|++..++...
T Consensus 155 ~l~~~~~~el~~~~~~I~~~p~n~saW~~r 184 (567)
T 1dce_A 155 QAAVAPAEELAFTDSLITRNFSNYSSWHYR 184 (567)
T ss_dssp HTCCCHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred HcCCChHHHHHHHHHHHHHCCCCccHHHHH
Confidence 999 99999999999999999998766543
No 183
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.78 E-value=4.2e-08 Score=83.62 Aligned_cols=75 Identities=16% Similarity=0.151 Sum_probs=71.5
Q ss_pred hhhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 358 KQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 358 ~~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
+..++..+|.++..++.+|..+...|++++|+.+|+++++.+|+++.+|+.+|.+|...|++++|+.+|++++++
T Consensus 8 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 8 LEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356788889999999999999999999999999999999999999999999999999999999999999999985
No 184
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.78 E-value=5.9e-09 Score=87.41 Aligned_cols=99 Identities=18% Similarity=0.143 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhh
Q 008246 402 NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSF 481 (572)
Q Consensus 402 ~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~ 481 (572)
++++++.+|.++...|++++|+++|++|+++ +|+++ .+++++|.++...|
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~~~~~lg~~~~~~g------------------ 52 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQNP-------VGYSNKAMALIKLG------------------ 52 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTT------------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH-------HHHHHHHHHHHHhc------------------
Confidence 5789999999999999999999999999986 66553 46788999999999
Q ss_pred hhhccHHHHHHHHHHHhcCCCCCCCch--hhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008246 482 VSQEKWEEGIAHLERIGNLKEPEEPKS--KAHYYDGLVVLASALCNVGRNAEAEKYLRL 538 (572)
Q Consensus 482 ~~~g~~~eAi~~l~kal~l~~p~dp~~--~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~ 538 (572)
++++|++.|+++++ .+|++ ...+..++..+|.++...|++++|++.+++
T Consensus 53 ----~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 53 ----EYTQAIQMCQQGLR----YTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp ----CHHHHHHHHHHHHT----SCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred ----CHHHHHHHHHHHHH----hCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 99999999999999 34443 112346677899999999988888766554
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.77 E-value=3.7e-08 Score=103.34 Aligned_cols=168 Identities=8% Similarity=0.061 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-----------------NALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~-----------------~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
|.+.++.|..+...|++++|++.|+++++.+|+.. .++..+|.+|...|++++|.++|++++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678899999999999999999999999998864 3689999999999999999999999997
Q ss_pred hhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhh-----HHHHH-------------hhhhhHhhhhhhccHHHHHHH
Q 008246 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNF-----FELVQ-------------QGQLKLLSFVSQEKWEEGIAH 493 (572)
Q Consensus 432 ~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~-----~~a~~-------------~~~~~~~~~~~~g~~~eAi~~ 493 (572)
.. +... ...........+|.++...|..+. .++.. .....+..+...|+|++|+..
T Consensus 84 ~~-----~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 157 (434)
T 4b4t_Q 84 YM-----MQFA-KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLAL 157 (434)
T ss_dssp HH-----HTSC-HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HH-----HHcc-chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHH
Confidence 51 1111 111112234455655544443221 11111 112235678899999999999
Q ss_pred HHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008246 494 LERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 544 (572)
Q Consensus 494 l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P 544 (572)
+++++......+ +.....+++..+|.+|...|++++|..+|++++...+
T Consensus 158 l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 158 INDLLREFKKLD--DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHHHHTTSS--CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc--cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 999886322222 1223456788999999999999999999999988753
No 186
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.76 E-value=6.6e-08 Score=86.28 Aligned_cols=119 Identities=13% Similarity=0.078 Sum_probs=97.1
Q ss_pred CCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH-
Q 008246 383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR- 461 (572)
Q Consensus 383 g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~- 461 (572)
+++++|+.+|+++.+.+.. .+. ||.+|...+..++|+++|++|.+. . + ..+.+++|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~-------g-----~--~~a~~~Lg~~y~~G 70 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL-------N-----S--GNGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT-------T-----C--HHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC-------C-----C--HHHHHHHHHHHHcC
Confidence 4678999999999998744 444 999999999999999999999973 1 1 2467889999887
Q ss_pred ---hhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHH----cCCHHHHHH
Q 008246 462 ---QAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCN----VGRNAEAEK 534 (572)
Q Consensus 462 ---~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~----~g~~eeA~~ 534 (572)
.+ ++++|+++|+++.+. .+ ..+..+||.+|.. .+++++|.+
T Consensus 71 ~g~~~----------------------d~~~A~~~~~~Aa~~---g~-------~~a~~~Lg~~y~~G~g~~~d~~~A~~ 118 (138)
T 1klx_A 71 KYVKK----------------------DLRKAAQYYSKACGL---ND-------QDGCLILGYKQYAGKGVVKNEKQAVK 118 (138)
T ss_dssp SSSCC----------------------CHHHHHHHHHHHHHT---TC-------HHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred CCCCc----------------------cHHHHHHHHHHHHcC---CC-------HHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 56 999999999999983 22 2677889999999 999999999
Q ss_pred HHHHHHHhCCCCHHHHHhc
Q 008246 535 YLRLAAAHNPQYNELLEQL 553 (572)
Q Consensus 535 ~l~~aL~l~P~~~~~l~~l 553 (572)
+|+++.+.. +......+
T Consensus 119 ~~~~Aa~~g--~~~A~~~l 135 (138)
T 1klx_A 119 TFEKACRLG--SEDACGIL 135 (138)
T ss_dssp HHHHHHHTT--CHHHHHHC
T ss_pred HHHHHHHCC--CHHHHHHH
Confidence 999999874 44444443
No 187
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.76 E-value=1.3e-08 Score=84.12 Aligned_cols=66 Identities=26% Similarity=0.396 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCCh
Q 008246 372 LIALSVKFLSKGDKERPIPLLQLALNKEPDNIN-ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEP 442 (572)
Q Consensus 372 ~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~-a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~ 442 (572)
.+..|..+...|++++|+..|+++++.+|+++. +++.+|.+|...|++++|+++|++++++ +|++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~ 69 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDSP 69 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcH
Confidence 467899999999999999999999999999999 9999999999999999999999999986 66654
No 188
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.75 E-value=1.3e-07 Score=97.72 Aligned_cols=131 Identities=12% Similarity=0.041 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHH-------HHHh
Q 008246 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFE-------LVQQ 473 (572)
Q Consensus 401 ~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~-------a~~~ 473 (572)
+..+++..+..+....+..++|++++++++.+ +|++. .+|+..+.++...|. .+.+ +...
T Consensus 52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~-----nP~~y-------taWn~R~~iL~~l~~-~l~eEL~~~~~~L~~ 118 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRM-----NPAHY-------TVWQYRFSLLTSLNK-SLEDELRLMNEFAVQ 118 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTTC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-----CchhH-------HHHHHHHHHHHHhhh-hHHHHHHHHHHHHHh
Confidence 33444444455555566678999999999987 77763 468888998888873 1222 2222
Q ss_pred hhh-------hHhhhhhh-c-cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHH--------HHHHHH
Q 008246 474 GQL-------KLLSFVSQ-E-KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNA--------EAEKYL 536 (572)
Q Consensus 474 ~~~-------~~~~~~~~-g-~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~e--------eA~~~l 536 (572)
++. +..++... + +++++++.++++++ .||++ +.++...+.++...|+++ ++++++
T Consensus 119 nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~----~dpkN----y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~ 190 (349)
T 3q7a_A 119 NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL----PDPKN----YHTWAYLHWLYSHFSTLGRISEAQWGSELDWC 190 (349)
T ss_dssp TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS----SCTTC----HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH----hCCCC----HHHHHHHHHHHHHhccccccchhhHHHHHHHH
Confidence 221 11223333 5 78999999999999 67765 367778999999998888 999999
Q ss_pred HHHHHhCCCCHHHHHh
Q 008246 537 RLAAAHNPQYNELLEQ 552 (572)
Q Consensus 537 ~~aL~l~P~~~~~l~~ 552 (572)
+++++.||.+..++.+
T Consensus 191 ~k~I~~dp~N~SAW~~ 206 (349)
T 3q7a_A 191 NEMLRVDGRNNSAWGW 206 (349)
T ss_dssp HHHHHHCTTCHHHHHH
T ss_pred HHHHHhCCCCHHHHHH
Confidence 9999999998876553
No 189
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.74 E-value=3.9e-09 Score=105.90 Aligned_cols=145 Identities=19% Similarity=0.157 Sum_probs=121.3
Q ss_pred hccccCCCCHHHHHHH-------HHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHH---------------------HHH
Q 008246 360 LKISVENLTPKELIAL-------SVKFLSKGDKERPIPLLQLALNKEPDNINALIL---------------------MGQ 411 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~l-------A~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~---------------------LG~ 411 (572)
+++..+|..+++++.+ +..+...++..+++..+++++++.|+...+++. ++.
T Consensus 31 ~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~ 110 (282)
T 4f3v_A 31 EITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAA 110 (282)
T ss_dssp HHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHH
T ss_pred HHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHH
Confidence 6889999999999999 899999999999999999999999987766666 788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHH
Q 008246 412 TQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGI 491 (572)
Q Consensus 412 l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi 491 (572)
++...|++++|.+.|++++.. .| +.. +.+.+|.++.+.+ ++++|+
T Consensus 111 ~L~~~g~y~eA~~~l~~~~~~-----~p------~~~--~~~~~a~l~~~~~----------------------r~~dA~ 155 (282)
T 4f3v_A 111 CEAAQGNYADAMEALEAAPVA-----GS------EHL--VAWMKAVVYGAAE----------------------RWTDVI 155 (282)
T ss_dssp HHHHHTCHHHHHHHHTSSCCT-----TC------HHH--HHHHHHHHHHHTT----------------------CHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhc-----CC------chH--HHHHHHHHHHHcC----------------------CHHHHH
Confidence 999999999999999877642 22 111 6788899999999 999999
Q ss_pred HHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC
Q 008246 492 AHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN--PQ 545 (572)
Q Consensus 492 ~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~--P~ 545 (572)
..|+++.+. + +|.. -..+++++|.++..+|++++|+++|++++... |.
T Consensus 156 ~~l~~a~~~--~-d~~~---~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~ 205 (282)
T 4f3v_A 156 DQVKSAGKW--P-DKFL---AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEA 205 (282)
T ss_dssp HHHTTGGGC--S-CHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTT
T ss_pred HHHHHhhcc--C-Cccc---HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcc
Confidence 999988772 1 2211 12477889999999999999999999998655 65
No 190
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.73 E-value=5.7e-08 Score=104.24 Aligned_cols=149 Identities=10% Similarity=-0.053 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHHHhcC---CcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhhhhcCCCC
Q 008246 368 TPKELIALSVKFLSKG---DKERPIPLLQLALNKEPDNINALILMGQTQLQK----GLLEEAVEYLECAISKLFLAGHPT 440 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g---~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~----g~~~eA~~~~~rAl~~l~~~~~P~ 440 (572)
++++++.+|..+...| ++++|+.+|+++.+.+|.++.+++.+|.+|... +++++|+++|++|. .
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~-------- 245 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P-------- 245 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G--------
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C--------
Confidence 3448888999998888 888999999999999999998889999988665 78999999998876 3
Q ss_pred ChhhhhHHHHHHHHHHHHHH-HhhchhhHHHHHhhhh------------hHhhhhhhc-----cHHHHHHHHHHHhcCCC
Q 008246 441 EPEAIDLLIVASQWSGVACI-RQAAHNFFELVQQGQL------------KLLSFVSQE-----KWEEGIAHLERIGNLKE 502 (572)
Q Consensus 441 ~~~~~~~~~~a~~~lG~~~~-~~g~~~~~~a~~~~~~------------~~~~~~~~g-----~~~eAi~~l~kal~l~~ 502 (572)
.. ..+++++|.+++ ..+..+..+++..... ++..|. .| ++++|+++|+++. .
T Consensus 246 ---g~---~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~-- 315 (452)
T 3e4b_A 246 ---GY---PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G-- 315 (452)
T ss_dssp ---GS---THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T--
T ss_pred ---CC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C--
Confidence 11 135677888743 1222233333322211 112233 44 8888888888886 1
Q ss_pred CCCCchhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 008246 503 PEEPKSKAHYYDGLVVLASALCN----VGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 503 p~dp~~~~~~~~al~~Lg~~l~~----~g~~eeA~~~l~~aL~l~ 543 (572)
.++ .++.+||.+|.. ..++++|..+|+++.+..
T Consensus 316 -g~~-------~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 316 -REV-------AADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp -TCH-------HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred -CCH-------HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 333 566778888776 348888888888887754
No 191
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.71 E-value=2e-07 Score=109.73 Aligned_cols=178 Identities=17% Similarity=0.104 Sum_probs=124.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC-----
Q 008246 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT----- 440 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~----- 440 (572)
..+++.++.+|..+...|++++|+..|.+| +|+++++.+|.++.+.|++++|+++|+.|... .++|.
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~L 1173 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETEL 1173 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHH
Confidence 456899999999999999999999999886 89999999999999999999999999998864 11110
Q ss_pred --------ChhhhhH-----HHHHHHHHHHHHHHhhchhh----HHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCC
Q 008246 441 --------EPEAIDL-----LIVASQWSGVACIRQAAHNF----FELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEP 503 (572)
Q Consensus 441 --------~~~~~~~-----~~~a~~~lG~~~~~~g~~~~----~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p 503 (572)
..+.... ....+...|..+...|+.+. +..+......+.++...|++++|++.++++..
T Consensus 1174 afaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n---- 1249 (1630)
T 1xi4_A 1174 IFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS---- 1249 (1630)
T ss_pred HHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCC----
Confidence 0000000 00124445666666653221 11222333346678889999999999999855
Q ss_pred CCCch---------------------hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 504 EEPKS---------------------KAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 504 ~dp~~---------------------~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
.++-. ...+.+.+-.++..|...|+++||+.++++++.++|.+..+..++..
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELai 1322 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAI 1322 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHH
Confidence 12100 00011234467888999999999999999999999998776655544
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.69 E-value=7e-08 Score=85.24 Aligned_cols=112 Identities=17% Similarity=0.011 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhh
Q 008246 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFV 482 (572)
Q Consensus 403 ~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~ 482 (572)
+.++..+|.++...|++++|+++|+++++.. +... +......++..+|.++...|
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----~~~~-~~~~~~~~~~~l~~~~~~~g------------------- 63 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-----KEFG-DKAAERIAYSNLGNAYIFLG------------------- 63 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHT-CHHHHHHHHHHHHHHHHHTT-------------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-----HHhC-CchHHHHHHHHHHHHHHHcC-------------------
Confidence 5788999999999999999999999999851 1111 11222346778888888888
Q ss_pred hhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008246 483 SQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNP 544 (572)
Q Consensus 483 ~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P 544 (572)
++++|++.+++++++.+ .. .+......++..+|.++...|++++|.++++++++..+
T Consensus 64 ---~~~~A~~~~~~a~~~~~-~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 64 ---EFETASEYYKKTLLLAR-QL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp ---CHHHHHHHHHHHHHHHH-HT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHH-Hh-CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999997421 11 11222345678899999999999999999999998743
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.68 E-value=6.1e-08 Score=81.07 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=60.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhh
Q 008246 398 KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLK 477 (572)
Q Consensus 398 ~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~ 477 (572)
.+|+++.+++.+|.+|...|++++|+++|++++++ +|++. .+++.+|.++...|
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~-------~a~~~lg~~~~~~g-------------- 55 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVET-----DPDYV-------GTYYHLGKLYERLD-------------- 55 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCT-------HHHHHHHHHHHHTT--------------
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcH-------HHHHHHHHHHHHcC--------------
Confidence 58999999999999999999999999999999986 66654 36888999999999
Q ss_pred HhhhhhhccHHHHHHHHHHHhcC
Q 008246 478 LLSFVSQEKWEEGIAHLERIGNL 500 (572)
Q Consensus 478 ~~~~~~~g~~~eAi~~l~kal~l 500 (572)
++++|++.|++++++
T Consensus 56 --------~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 56 --------RTDDAIDTYAQGIEV 70 (100)
T ss_dssp --------CHHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHhh
Confidence 999999999999983
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.63 E-value=1.9e-07 Score=75.09 Aligned_cols=85 Identities=22% Similarity=0.319 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhh
Q 008246 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLS 480 (572)
Q Consensus 401 ~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~ 480 (572)
+++.+++.+|.++...|++++|+.+|+++++. +|.+. .++..+|.++...|
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~-------~~~~~l~~~~~~~~----------------- 57 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNA-------EAWYNLGNAYYKQG----------------- 57 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTT-----------------
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCH-------HHHHHHHHHHHHHh-----------------
Confidence 56899999999999999999999999999985 55543 46788999999999
Q ss_pred hhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcC
Q 008246 481 FVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG 527 (572)
Q Consensus 481 ~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g 527 (572)
++++|++.|+++++ .+|.+. .++..+|.++...|
T Consensus 58 -----~~~~A~~~~~~a~~----~~p~~~----~~~~~l~~~~~~~g 91 (91)
T 1na3_A 58 -----DYDEAIEYYQKALE----LDPNNA----EAKQNLGNAKQKQG 91 (91)
T ss_dssp -----CHHHHHHHHHHHHH----HCTTCH----HHHHHHHHHHHHHC
T ss_pred -----hHHHHHHHHHHHHh----cCCCCH----HHHHHHHHHHHhcC
Confidence 99999999999999 455433 46677898887765
No 195
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.61 E-value=1.6e-07 Score=78.20 Aligned_cols=68 Identities=22% Similarity=0.229 Sum_probs=63.0
Q ss_pred CCCCHHHHHHHHHHHHhcCC---cccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 365 ENLTPKELIALSVKFLSKGD---KERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~---~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
+|.+++.+..+|..++..++ .++|...+++||+.||+++++++.+|..+++.|+|++|+.+|+++++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57789999999999976655 689999999999999999999999999999999999999999999974
No 196
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.59 E-value=3.1e-07 Score=98.50 Aligned_cols=159 Identities=13% Similarity=0.085 Sum_probs=117.9
Q ss_pred hhccccCCCCHHHHHHHHHHHHhc----CCcccHHHHHHHHHhhCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHH
Q 008246 359 QLKISVENLTPKELIALSVKFLSK----GDKERPIPLLQLALNKEPDNINALILMGQT-Q--LQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~----g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l-~--~~~g~~~eA~~~~~rAl~ 431 (572)
.++....+.++..++.+|..+... +++++|+.+|+++. |+++.+++.||.+ + ...|++++|+++|++|++
T Consensus 203 ~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 203 EAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 456677777788778999998665 68899999999988 8999999999998 4 578999999999999996
Q ss_pred hhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhc---hhhHHHHHhhhh-----------hHhhhhh----hccHHHHHHH
Q 008246 432 KLFLAGHPTEPEAIDLLIVASQWSGVACIRQAA---HNFFELVQQGQL-----------KLLSFVS----QEKWEEGIAH 493 (572)
Q Consensus 432 ~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~---~~~~~a~~~~~~-----------~~~~~~~----~g~~~eAi~~ 493 (572)
. .+ ..+++++|.+|. .|. .+..+++..... ++..|.. ..++++|+.+
T Consensus 280 ~-------g~-------~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 344 (452)
T 3e4b_A 280 A-------DQ-------PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDH 344 (452)
T ss_dssp T-------TC-------HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHH
T ss_pred C-------CC-------HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 2 11 246788898887 441 123333222111 1223333 3489999999
Q ss_pred HHHHhcCCCCCCCchhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC
Q 008246 494 LERIGNLKEPEEPKSKAHYYDGLVVLASALCN----VGRNAEAEKYLRLAAAHNPQ 545 (572)
Q Consensus 494 l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~----~g~~eeA~~~l~~aL~l~P~ 545 (572)
|+++.+. .++ .+..+||.+|.. ..++++|..+|+++.+..+.
T Consensus 345 ~~~Aa~~---g~~-------~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 345 LLTAARN---GQN-------SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHTT---TCT-------THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHhh---ChH-------HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 9999983 233 567889999985 56899999999999987654
No 197
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.56 E-value=7.6e-08 Score=102.09 Aligned_cols=177 Identities=17% Similarity=0.100 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC-Ch-----
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT-EP----- 442 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~-~~----- 442 (572)
++.+..+|..+.+.|++++|++.|.++ +|+.++...+..+...|++++|+.+++.+.+.+ ++|. +.
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~---~~~~i~~~Li~~ 103 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---ccchhHHHHHHH
Confidence 457788888888888888888888663 466688888888888888888888887777520 0000 00
Q ss_pred -------hh-----hhHHHHHHHHHHHHHHHhhchhh----HHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCC
Q 008246 443 -------EA-----IDLLIVASQWSGVACIRQAAHNF----FELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEP 506 (572)
Q Consensus 443 -------~~-----~~~~~~a~~~lG~~~~~~g~~~~----~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp 506 (572)
+. ..+...++..+|..+...|..+- +..+.....++.++...|++++|++.++++.. +
T Consensus 104 Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~------~ 177 (449)
T 1b89_A 104 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS------T 177 (449)
T ss_dssp -----CHHHHTTTTTCC----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTC------H
T ss_pred HHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCC------c
Confidence 00 00011256777877777775442 22333444567889999999999999999932 2
Q ss_pred chhhhhhHH-----------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccccchH
Q 008246 507 KSKAHYYDG-----------------------LVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLENNDEE 559 (572)
Q Consensus 507 ~~~~~~~~a-----------------------l~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~~~~~ 559 (572)
........+ +..+...|.+.|+++||+.++++++.+++.+..+...+.....+
T Consensus 178 ~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 178 RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 111111111 22355789999999999999999999999998777766554333
No 198
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.49 E-value=1.7e-07 Score=77.27 Aligned_cols=91 Identities=14% Similarity=0.142 Sum_probs=68.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH-HHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhh
Q 008246 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV-ASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQ 484 (572)
Q Consensus 406 ~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~-a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~ 484 (572)
.+.+|..+...|++++|+++|+++++. +|++. . +++++|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~-------~~~~~~lg~~~~~~~--------------------- 49 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQT-----EPVGK-------DEAYYLMGNAYRKLG--------------------- 49 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHH-----CSSTH-------HHHHHHHHHHHHHHT---------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCcH-------HHHHHHHHHHHHHcC---------------------
Confidence 356788899999999999999999885 55543 3 5778888888888
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 485 EKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 485 g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
++++|++.|+++++ .+|++.. ++. .+.+++|..+|++++..+|+.
T Consensus 50 -~~~~A~~~~~~al~----~~p~~~~----~~~--------~~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 50 -DWQKALNNYQSAIE----LNPDSPA----LQA--------RKMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp -CHHHHHHHHHHHHH----HCTTSTH----HHH--------HHHHHHHHHHHCCTTHHHHCC
T ss_pred -CHHHHHHHHHHHHh----cCCCcHH----HHH--------HHHHHHHHHHHHHHhccCccc
Confidence 99999999999998 3454332 111 156788888888888887765
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.36 E-value=2.3e-06 Score=92.75 Aligned_cols=110 Identities=12% Similarity=-0.018 Sum_probs=82.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHH
Q 008246 410 GQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEE 489 (572)
Q Consensus 410 G~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~e 489 (572)
+..+..+|++++|+..|++++++....-.|++ +.....+.++|.+|..+| +|++
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~H----p~~a~~~~nLa~~y~~~g----------------------~~~e 369 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTN----LYVLRLLSIASEVLSYLQ----------------------AYEE 369 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTS----HHHHHHHHHHHHHHHHTT----------------------CHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHHhc----------------------CHHH
Confidence 34567899999999999999985211112222 233457888999999999 9999
Q ss_pred HHHHHHHHhcCC----CCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH
Q 008246 490 GIAHLERIGNLK----EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH-----NPQYNEL 549 (572)
Q Consensus 490 Ai~~l~kal~l~----~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l-----~P~~~~~ 549 (572)
|+.+++++++.. .+.+|. ....+.+||.+|..+|++++|+.+|++|+++ .|++...
T Consensus 370 A~~~~~~aL~i~~~~lG~~Hp~----~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 434 (490)
T 3n71_A 370 ASHYARRMVDGYMKLYHHNNAQ----LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT 434 (490)
T ss_dssp HHHHHHHHHHHHHHHSCTTCHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence 999999998532 233442 3456789999999999999999999999986 4676543
No 200
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.29 E-value=2.6e-06 Score=90.82 Aligned_cols=107 Identities=15% Similarity=0.061 Sum_probs=80.1
Q ss_pred HcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHH
Q 008246 415 QKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHL 494 (572)
Q Consensus 415 ~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l 494 (572)
..|++++|+..|++++++....-.|+++ .....+.++|.+|..+| +|++|+.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp----~~a~~~~nLa~~y~~~g----------------------~~~eA~~~~ 363 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNV----YMLHMMYQAMGVCLYMQ----------------------DWEGALKYG 363 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSH----HHHHHHHHHHHHHHHTT----------------------CHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhch----HHHHHHHHHHHHHHhhc----------------------CHHHHHHHH
Confidence 5689999999999999852111123332 33457888999999999 999999999
Q ss_pred HHHhcCC----CCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 008246 495 ERIGNLK----EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH-----NPQYNELLE 551 (572)
Q Consensus 495 ~kal~l~----~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l-----~P~~~~~l~ 551 (572)
+++++.. .|.+|. -...+.+||.+|..+|++++|+.+|++|+++ .|++....+
T Consensus 364 ~~aL~i~~~~lG~~Hp~----~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 364 QKIIKPYSKHYPVYSLN----VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHHHHHSCSSCHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHHHHHHcCCCChH----HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 9998632 233442 3456788999999999999999999999986 466654433
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.28 E-value=2.5e-06 Score=91.00 Aligned_cols=104 Identities=16% Similarity=0.115 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNK-----EPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~-----dP~~---~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~ 441 (572)
+..+.....+..+|++++|+..++++++. .|+| ...+.++|.+|..+|++++|+.++++++++....--|++
T Consensus 288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 34556666778899999999999999975 3555 577889999999999999999999999985211112333
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 442 PEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 442 ~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
+ .....++++|.+|..+| ++++|+..|++|++
T Consensus 368 p----~~a~~l~nLa~~~~~~g----------------------~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 368 P----VRGVQVMKVGKLQLHQG----------------------MFPQAMKNLRLAFD 399 (429)
T ss_dssp H----HHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH
T ss_pred h----HHHHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHH
Confidence 2 33456888999999999 99999999999986
No 202
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.27 E-value=7e-06 Score=69.20 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCC
Q 008246 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALNKE-------PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGH 438 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~d-------P~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~ 438 (572)
.++++.++.+|..++++|++++|+.+|++|++.. +..++++..||.++.+.|++++|+.++++|+.+ +
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-----~ 76 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----D 76 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----C
Confidence 4688999999999999999999999999999973 456899999999999999999999999999986 7
Q ss_pred CCCh
Q 008246 439 PTEP 442 (572)
Q Consensus 439 P~~~ 442 (572)
|++.
T Consensus 77 P~~~ 80 (104)
T 2v5f_A 77 PEHQ 80 (104)
T ss_dssp TTCH
T ss_pred CCCH
Confidence 7764
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.26 E-value=4.6e-06 Score=74.12 Aligned_cols=88 Identities=19% Similarity=0.131 Sum_probs=78.3
Q ss_pred HHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHH
Q 008246 375 LSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQ----KGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIV 450 (572)
Q Consensus 375 lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~----~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~ 450 (572)
+|..+...+..++|+.+|++|.+. +++.+++.||.+|.. .+++++|.++|++|.+. . + ..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-----------g-~--~~ 94 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-----------N-D--QD 94 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----------T-C--HH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-----------C-C--HH
Confidence 899998888999999999999987 799999999999999 99999999999999973 1 1 24
Q ss_pred HHHHHHHHHHH----hhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcC
Q 008246 451 ASQWSGVACIR----QAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNL 500 (572)
Q Consensus 451 a~~~lG~~~~~----~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l 500 (572)
+.+++|.+|.. .+ ++++|+++|+++.+.
T Consensus 95 a~~~Lg~~y~~G~g~~~----------------------d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 95 GCLILGYKQYAGKGVVK----------------------NEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHTSSSCC----------------------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCc----------------------CHHHHHHHHHHHHHC
Confidence 67889999888 66 999999999999984
No 204
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.24 E-value=3.4e-06 Score=89.94 Aligned_cols=112 Identities=15% Similarity=-0.005 Sum_probs=82.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHH
Q 008246 413 QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIA 492 (572)
Q Consensus 413 ~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~ 492 (572)
+..+|++++|++.|++++++....-.|++ ......+.++|.+|..+| +|++|+.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h----~~~~~~~~~L~~~y~~~g----------------------~~~eA~~ 350 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDIN----IYQLKVLDCAMDACINLG----------------------LLEEALF 350 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTS----HHHHHHHHHHHHHHHHHT----------------------CHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccc----hHHHHHHHHHHHHHHhhc----------------------cHHHHHH
Confidence 55789999999999999974100012222 234457888999999999 9999999
Q ss_pred HHHHHhcCC----CCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHhcc
Q 008246 493 HLERIGNLK----EPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH-----NPQYNELLEQLE 554 (572)
Q Consensus 493 ~l~kal~l~----~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l-----~P~~~~~l~~l~ 554 (572)
+++++++.. .+.+| .....+.+||.+|..+|++++|+.+|++|+++ .|++....+...
T Consensus 351 ~~~~~L~i~~~~lg~~Hp----~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~ 417 (429)
T 3qwp_A 351 YGTRTMEPYRIFFPGSHP----VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLIL 417 (429)
T ss_dssp HHHHHHHHHHHHSCSSCH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHH
T ss_pred HHHHHHHhHHHHcCCCCh----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 999998532 23333 23456788999999999999999999999986 477765554433
No 205
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.24 E-value=2.6e-05 Score=87.80 Aligned_cols=194 Identities=10% Similarity=0.022 Sum_probs=132.7
Q ss_pred hhhccccCCCCHHHHHHHHHHHHhcCCcccHH-HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--
Q 008246 358 KQLKISVENLTPKELIALSVKFLSKGDKERPI-PLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLF-- 434 (572)
Q Consensus 358 ~~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~-~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~-- 434 (572)
|++++..-|.+++.++..|..+...|+.++|. ..|++|+...|++...|+.++.+....|++++|.+.|++++..+.
T Consensus 332 Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~ 411 (679)
T 4e6h_A 332 YMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD 411 (679)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 57788888999999999999999999999997 999999999999999999999999999999999999999997310
Q ss_pred ----hcCCCCChhhhh----HHHHHHHHHHHHHHHhhchh-----hHHHHHh-hhhhHhhhh-------h-hccHHHHHH
Q 008246 435 ----LAGHPTEPEAID----LLIVASQWSGVACIRQAAHN-----FFELVQQ-GQLKLLSFV-------S-QEKWEEGIA 492 (572)
Q Consensus 435 ----~~~~P~~~~~~~----~~~~a~~~lG~~~~~~g~~~-----~~~a~~~-~~~~~~~~~-------~-~g~~~eAi~ 492 (572)
....|.+.+..+ .....|...+....+.|..+ +.+|.+. .......|. . .++++.|.+
T Consensus 412 ~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ 491 (679)
T 4e6h_A 412 LAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACK 491 (679)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHH
T ss_pred hhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHH
Confidence 000122100000 01123444444444444222 2223222 111111111 1 345899999
Q ss_pred HHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhccccchH
Q 008246 493 HLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQ---YNELLEQLENNDEE 559 (572)
Q Consensus 493 ~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~---~~~~l~~l~~~~~~ 559 (572)
.|+++++ ..|.+. ..+..++......|+.+.|+.+|++++...|+ ...++..+.+.+.+
T Consensus 492 ife~~Lk----~~p~~~----~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~ 553 (679)
T 4e6h_A 492 VLELGLK----YFATDG----EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK 553 (679)
T ss_dssp HHHHHHH----HHTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HCCCch----HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 9999998 344333 23456777888889999999999999999884 55667766663333
No 206
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.22 E-value=4.5e-06 Score=89.01 Aligned_cols=101 Identities=13% Similarity=-0.035 Sum_probs=79.2
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 373 IALSVKFLSKGDKERPIPLLQLALNK-----EPDN---INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL~~-----dP~~---~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
++........|++++|+..|+++|++ .|+| +..+.+||.+|..+|++++|+.+|++++++....--|+++
T Consensus 302 le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp-- 379 (433)
T 3qww_A 302 IEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL-- 379 (433)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH--
T ss_pred HHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh--
Confidence 34444455678999999999999984 4666 4678899999999999999999999999852111123333
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
.....++++|.+|..+| ++++|+..|++|++
T Consensus 380 --~~a~~l~nLa~~~~~qg----------------------~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 380 --NVASMWLKLGRLYMGLE----------------------NKAAGEKALKKAIA 410 (433)
T ss_dssp --HHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhcc----------------------CHHHHHHHHHHHHH
Confidence 23456889999999999 99999999999987
No 207
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=4.4e-06 Score=87.37 Aligned_cols=143 Identities=7% Similarity=-0.053 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEP------DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP------~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
....++..+...|++++|+.++++++...+ ..+.++..+|.+|...|++++|..++++++... .+..+
T Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~---- 170 (434)
T 4b4t_Q 97 LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF--KKLDD---- 170 (434)
T ss_dssp HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSSC----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH--Hhccc----
Confidence 345566667777888888888888887533 336788888999999999999999988888642 11111
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHH
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALC 524 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~ 524 (572)
......++...|.++...| ++++|...|++++... +..+.........+..+|..+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~----------------------~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~ 227 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLR----------------------NLAKSKASLTAARTAA-NSIYCPTQTVAELDLMSGILHC 227 (434)
T ss_dssp STHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHH-HHSCCCHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHHHhC----------------------cHHHHHHHHHHHHHHh-hcCCCchHHHHHHHHHHHHHHH
Confidence 1223356677788888888 9999999999998632 1112111222345667899999
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 008246 525 NVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 525 ~~g~~eeA~~~l~~aL~l 542 (572)
..|++++|..+|.++++.
T Consensus 228 ~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 228 EDKDYKTAFSYFFESFES 245 (434)
T ss_dssp SSSCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 999999999999999875
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.19 E-value=1.9e-05 Score=65.41 Aligned_cols=68 Identities=15% Similarity=0.050 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhh
Q 008246 399 EPDNINALILMGQTQLQKGL---LEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQ 475 (572)
Q Consensus 399 dP~~~~a~~~LG~l~~~~g~---~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~ 475 (572)
+|++++++..+|.+++..++ .++|..++++|+++ +|++. .+...+|..+++.|
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~-----dp~~~-------rA~~~lg~~~~~~g------------ 57 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL-----EPYNE-------AALSLIANDHFISF------------ 57 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH-----CTTCH-------HHHHHHHHHHHHTT------------
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-----CcCCH-------HHHHHHHHHHHHcC------------
Confidence 79999999999999987766 79999999999996 77764 56788999999999
Q ss_pred hhHhhhhhhccHHHHHHHHHHHhcC
Q 008246 476 LKLLSFVSQEKWEEGIAHLERIGNL 500 (572)
Q Consensus 476 ~~~~~~~~~g~~~eAi~~l~kal~l 500 (572)
+|++|+++++++++.
T Consensus 58 ----------~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 58 ----------RFQEAIDTWVLLLDS 72 (93)
T ss_dssp ----------CHHHHHHHHHHHHTC
T ss_pred ----------CHHHHHHHHHHHHhh
Confidence 999999999999993
No 209
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.12 E-value=2.7e-05 Score=78.92 Aligned_cols=147 Identities=15% Similarity=0.051 Sum_probs=105.5
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhh
Q 008246 388 PIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNF 467 (572)
Q Consensus 388 A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~ 467 (572)
|+..+++.++.++.+..+++.+|.++...|++++|++++++++.. +|+. ....++...+.++.+.|+.+.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-----~~~~-----~~lea~~l~vqi~L~~~r~d~ 154 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDN-----DEAE-----GTTELLLLAIEVALLNNNVST 154 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----SCST-----THHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CCCc-----CcHHHHHHHHHHHHHCCCHHH
Confidence 899999999987778888899999999999999999999999852 2210 112456777889999997764
Q ss_pred HHH-----HHhhh------h-----hHhhhh--hhc--cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcC
Q 008246 468 FEL-----VQQGQ------L-----KLLSFV--SQE--KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVG 527 (572)
Q Consensus 468 ~~a-----~~~~~------~-----~~~~~~--~~g--~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g 527 (572)
++. .+.++ . .+.+|+ ..| ++.+|...|+++.+ ..|+.. .....++ ++.++|
T Consensus 155 A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~----~~p~~~----~~~lLln-~~~~~g 225 (310)
T 3mv2_B 155 ASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ----TFPTWK----TQLGLLN-LHLQQR 225 (310)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT----TSCSHH----HHHHHHH-HHHHHT
T ss_pred HHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hCCCcc----cHHHHHH-HHHHcC
Confidence 221 12222 1 122333 334 89999999999887 445311 1122333 899999
Q ss_pred CHHHHHHHHHHHHHh----------CCCCHHHHHhc
Q 008246 528 RNAEAEKYLRLAAAH----------NPQYNELLEQL 553 (572)
Q Consensus 528 ~~eeA~~~l~~aL~l----------~P~~~~~l~~l 553 (572)
++++|++.++.+++. +|++.+.+.++
T Consensus 226 ~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~ 261 (310)
T 3mv2_B 226 NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQ 261 (310)
T ss_dssp CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHH
Confidence 999999999988887 58888777554
No 210
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.12 E-value=5.1e-06 Score=82.84 Aligned_cols=101 Identities=12% Similarity=0.004 Sum_probs=79.4
Q ss_pred CCCCHHHHHHHHHHHHh-----cCCc------ccHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHH
Q 008246 365 ENLTPKELIALSVKFLS-----KGDK------ERPIPLLQLALNKEPD--NINALILMGQTQLQK-----GLLEEAVEYL 426 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~-----~g~~------~~A~~~l~~AL~~dP~--~~~a~~~LG~l~~~~-----g~~~eA~~~~ 426 (572)
++.+++.++=.|..... .|++ .+|...+++|+++||+ +..+|..||.+|... |+.++|.++|
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~f 227 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAF 227 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHH
Confidence 45567777666555432 3444 4688999999999999 677999999999995 9999999999
Q ss_pred HHHHHhhhhcCCCCC-hhhhhHHHHHHHHHHHHHHHh-hchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 427 ECAISKLFLAGHPTE-PEAIDLLIVASQWSGVACIRQ-AAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 427 ~rAl~~l~~~~~P~~-~~~~~~~~~a~~~lG~~~~~~-g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
+||+++ +|+. . ..++.+|..+++. | ++++|.++++++++
T Consensus 228 erAL~L-----nP~~~i-------d~~v~YA~~l~~~~g----------------------d~~~a~~~L~kAL~ 268 (301)
T 3u64_A 228 EHLTRY-----CSAHDP-------DHHITYADALCIPLN----------------------NRAGFDEALDRALA 268 (301)
T ss_dssp HHHHHH-----CCTTCS-------HHHHHHHHHTTTTTT----------------------CHHHHHHHHHHHHH
T ss_pred HHHHHh-----CCCCCc-------hHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHc
Confidence 999997 7754 3 2345567766664 6 99999999999999
No 211
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.09 E-value=2.5e-05 Score=92.34 Aligned_cols=147 Identities=13% Similarity=0.044 Sum_probs=109.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 365 ENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
+..+...+...|..+.+.|++++|..+|++| ..|..+|.+|.+.|++++|++++++|...
T Consensus 1191 ~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~------------ 1250 (1630)
T 1xi4_A 1191 NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANST------------ 1250 (1630)
T ss_pred hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH------------
Confidence 3445677889999999999999999999996 58999999999999999999999998631
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHHH--------hhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHH
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELVQ--------QGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL 516 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~~--------~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al 516 (572)
.+|...+.++...|+.+.+.... ..+..+..|...|.+++|+..+++++.+ ++.+.. .+
T Consensus 1251 -----~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L----eraH~g----mf 1317 (1630)
T 1xi4_A 1251 -----RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL----ERAHMG----MF 1317 (1630)
T ss_pred -----HHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----ChhHhH----HH
Confidence 35666777887777444332222 1123455688899999999999999994 454332 33
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHhCC
Q 008246 517 VVLASALCN--VGRNAEAEKYLRLAAAHNP 544 (572)
Q Consensus 517 ~~Lg~~l~~--~g~~eeA~~~l~~aL~l~P 544 (572)
..||.+|.+ -++..|+.++|...+.+.|
T Consensus 1318 tELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1318 TELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 345655554 4677788888887777655
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.01 E-value=1.5e-05 Score=67.13 Aligned_cols=81 Identities=15% Similarity=0.032 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHH
Q 008246 452 SQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAE 531 (572)
Q Consensus 452 ~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~ee 531 (572)
.+.+|..+++.| +|+.|+.+|++|++..++.+ .......+.+..||.++.++|++++
T Consensus 8 c~~lG~~~~~~~----------------------~y~~A~~W~~~Al~~~~~~~-~~~~~~~~i~~~L~~~~~~~g~~~~ 64 (104)
T 2v5f_A 8 CFELGKVAYTEA----------------------DYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDK 64 (104)
T ss_dssp HHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcc----------------------chHHHHHHHHHHHHhhhccC-CCcccHHHHHHHHHHHHHHccCHHH
Confidence 356788888888 99999999999998432211 0011234667889999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHhccc
Q 008246 532 AEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 532 A~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
|..+++++++++|++...+.++.-
T Consensus 65 A~~~~~~al~l~P~~~~~~~n~~~ 88 (104)
T 2v5f_A 65 ALLLTKKLLELDPEHQRANGNLKY 88 (104)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHhhHHH
Confidence 999999999999999888766653
No 213
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.90 E-value=1e-05 Score=85.85 Aligned_cols=106 Identities=14% Similarity=0.070 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHH
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLI 449 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~ 449 (572)
.++..+|..+...|++++|..+|.++ ..|..+|.++.+.|++++|+++|++|-. .
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~~-----------------~ 177 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANS-----------------T 177 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHTC-----------------H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcCC-----------------c
Confidence 48899999999999999999999988 5889999999999999999999999852 1
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHh--------hhhhHhhhhhhccHHHHHHHHHHHhcC
Q 008246 450 VASQWSGVACIRQAAHNFFELVQQ--------GQLKLLSFVSQEKWEEGIAHLERIGNL 500 (572)
Q Consensus 450 ~a~~~lG~~~~~~g~~~~~~a~~~--------~~~~~~~~~~~g~~~eAi~~l~kal~l 500 (572)
..|...+.++...|+.+.++.+.. ....+..|.+.|++++|+..+++++.+
T Consensus 178 ~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 178 RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 345666788888885554432211 112345688899999999999999994
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.90 E-value=1.8e-05 Score=71.48 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=71.3
Q ss_pred hhhccccCCCCHHHHHHHHHHHHhcC---CcccHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 358 KQLKISVENLTPKELIALSVKFLSKG---DKERPIPLLQLALNKE-P-DNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 358 ~~~ai~~~~~~~~~~~~lA~~~~~~g---~~~~A~~~l~~AL~~d-P-~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
|...++.++.+.+..++.|..+.+.+ +.++++.+++..++.+ | ++.+++|.||..|++.|+|++|.+++++++++
T Consensus 21 y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 21 FQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44555666789999999999999988 6779999999999999 7 67999999999999999999999999999997
Q ss_pred hhhcCCCCCh
Q 008246 433 LFLAGHPTEP 442 (572)
Q Consensus 433 l~~~~~P~~~ 442 (572)
+|++.
T Consensus 101 -----eP~n~ 105 (152)
T 1pc2_A 101 -----EPQNN 105 (152)
T ss_dssp -----CTTCH
T ss_pred -----CCCCH
Confidence 77764
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.89 E-value=5.4e-05 Score=68.39 Aligned_cols=88 Identities=10% Similarity=0.028 Sum_probs=74.0
Q ss_pred cccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHH
Q 008246 385 KERPIPLLQLALNKEPDNINALILMGQTQLQKG---LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIR 461 (572)
Q Consensus 385 ~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g---~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~ 461 (572)
...+++.|++.++.++.+.++.+.+|+++.+.+ +.++|+..++..++. + . ++.....+|++|..+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-----~--~---p~~~rd~lY~LAv~~~k 83 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-----G--S---KEEQRDYVFYLAVGNYR 83 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-----S--C---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----C--C---ccchHHHHHHHHHHHHH
Confidence 345788889999999999999999999999988 777999999999973 1 0 21234578999999999
Q ss_pred hhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCch
Q 008246 462 QAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKS 508 (572)
Q Consensus 462 ~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~ 508 (572)
.| +|++|+++++++++ .+|++
T Consensus 84 l~----------------------~Y~~A~~y~~~lL~----ieP~n 104 (152)
T 1pc2_A 84 LK----------------------EYEKALKYVRGLLQ----TEPQN 104 (152)
T ss_dssp TS----------------------CHHHHHHHHHHHHH----HCTTC
T ss_pred cc----------------------CHHHHHHHHHHHHh----cCCCC
Confidence 99 99999999999999 56654
No 216
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.80 E-value=5.8e-05 Score=84.92 Aligned_cols=174 Identities=7% Similarity=-0.114 Sum_probs=119.7
Q ss_pred hhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhh-----------CCC-----------CHHHHHHHHHHHHHc
Q 008246 359 QLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNK-----------EPD-----------NINALILMGQTQLQK 416 (572)
Q Consensus 359 ~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~-----------dP~-----------~~~a~~~LG~l~~~~ 416 (572)
++++..-|.+...++..+......|++++|...|+++++. .|. ...+|..++.+..+.
T Consensus 368 ~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 368 KLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 3566666667777888999999999999999999999985 253 456899999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhc-hh-----hHHHHHhhhh-------hHhhhhh
Q 008246 417 GLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAA-HN-----FFELVQQGQL-------KLLSFVS 483 (572)
Q Consensus 417 g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~-~~-----~~~a~~~~~~-------~~~~~~~ 483 (572)
|+.+.|...|.+|+.. .|... ...|...+....+.+. .+ +..+++.... .+.....
T Consensus 448 ~~l~~AR~vf~~A~~~-----~~~~~------~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRL-----KKLVT------PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY 516 (679)
T ss_dssp HCHHHHHHHHHHHHHT-----GGGSC------THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-----cCCCC------hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence 9999999999999972 01110 1123333333333331 11 1222222211 1223446
Q ss_pred hccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008246 484 QEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 484 ~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
.|+.+.|..+|++++.. .|.. ......+......-...|+.+.+.+.++++++..|+...
T Consensus 517 ~~~~~~AR~lferal~~----~~~~-~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDK----ISDS-HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HTCHHHHHHHHHHHTTT----SSST-THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred CCCHHHHHHHHHHHHHh----cCCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 78999999999999983 3310 011234556677788889999999999999999998754
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.78 E-value=5.6e-05 Score=78.17 Aligned_cols=106 Identities=9% Similarity=-0.002 Sum_probs=82.8
Q ss_pred hccccCCCCHHHHHHHHHHHHh---cCCcc-cHHH----HHH--HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008246 360 LKISVENLTPKELIALSVKFLS---KGDKE-RPIP----LLQ--LALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (572)
Q Consensus 360 ~ai~~~~~~~~~~~~lA~~~~~---~g~~~-~A~~----~l~--~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rA 429 (572)
++++.||..+.++..++..+.. .+... .... .++ .++..+|.++.++..+|.++...|++++|+.+++||
T Consensus 224 ~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rA 303 (372)
T 3ly7_A 224 EIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG 303 (372)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6999999999999888887752 12111 1111 222 234678999999999999999999999999999999
Q ss_pred HHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcC
Q 008246 430 ISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNL 500 (572)
Q Consensus 430 l~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l 500 (572)
+++ +|+ ..++..+|.++...| ++++|++.|++|+++
T Consensus 304 l~L-----n~s--------~~a~~llG~~~~~~G----------------------~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 304 IDL-----EMS--------WLNYVLLGKVYEMKG----------------------MNREAADAYLTAFNL 339 (372)
T ss_dssp HHH-----CCC--------HHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHH
T ss_pred Hhc-----CCC--------HHHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHhc
Confidence 985 332 235677899999999 999999999999994
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.71 E-value=3.4e-05 Score=76.93 Aligned_cols=74 Identities=9% Similarity=-0.051 Sum_probs=68.0
Q ss_pred hhccccCCC--CHHHHHHHHHHHHh-----cCCcccHHHHHHHHHhhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHH
Q 008246 359 QLKISVENL--TPKELIALSVKFLS-----KGDKERPIPLLQLALNKEPDN-INALILMGQTQLQ-KGLLEEAVEYLECA 429 (572)
Q Consensus 359 ~~ai~~~~~--~~~~~~~lA~~~~~-----~g~~~~A~~~l~~AL~~dP~~-~~a~~~LG~l~~~-~g~~~eA~~~~~rA 429 (572)
++++++||. +..++..+|..|.. -|+.++|+++|++||+++|+. ..+++.+|..+.. .|++++|.+++++|
T Consensus 187 erAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 187 ERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 578999998 67799999999998 499999999999999999975 9999999999988 59999999999999
Q ss_pred HHh
Q 008246 430 ISK 432 (572)
Q Consensus 430 l~~ 432 (572)
++.
T Consensus 267 L~a 269 (301)
T 3u64_A 267 LAI 269 (301)
T ss_dssp HHC
T ss_pred HcC
Confidence 984
No 219
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.62 E-value=0.0006 Score=60.94 Aligned_cols=120 Identities=12% Similarity=-0.008 Sum_probs=87.4
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHH-HHhhchhhHH
Q 008246 397 NKEPDNINALILMGQTQLQKGLL------EEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC-IRQAAHNFFE 469 (572)
Q Consensus 397 ~~dP~~~~a~~~LG~l~~~~g~~------~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~-~~~g~~~~~~ 469 (572)
-++|+|++.|..........|+. ++-.+.|+||+..+ |.+. ....-..++.|.-.+. ...
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-----Pp~k-~~~wrrYI~LWIrYA~~~ei------- 73 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-----PPDK-YGQNESFARIQVRFAELKAI------- 73 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-----CGGG-GTTCHHHHHHHHHHHHHHHH-------
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-----Cccc-cccHHHHHHHHHHHHHHHHh-------
Confidence 46899999999999999999999 99999999999852 2221 1111111222221111 222
Q ss_pred HHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008246 470 LVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNEL 549 (572)
Q Consensus 470 a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~ 549 (572)
++.++|.+.|+.++++ .. .+...|...|..-.++|+.+.|++.+.+|+...|.-.++
T Consensus 74 ---------------~D~d~aR~vy~~a~~~----hK----kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 74 ---------------QEPDDARDYFQMARAN----CK----KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp ---------------HCGGGCHHHHHHHHHH----CT----TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred ---------------cCHHHHHHHHHHHHHH----hH----HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 3899999999999983 11 246788899999999999999999999999999998877
Q ss_pred HHh
Q 008246 550 LEQ 552 (572)
Q Consensus 550 l~~ 552 (572)
++.
T Consensus 131 le~ 133 (161)
T 4h7y_A 131 LEI 133 (161)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 220
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.16 E-value=0.0021 Score=55.99 Aligned_cols=100 Identities=17% Similarity=0.086 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHH
Q 008246 418 LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERI 497 (572)
Q Consensus 418 ~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~ka 497 (572)
....+.+.|+++... ++.. ..+.++++.++.+.. ...+..+++..++..
T Consensus 16 ~l~~~~~~y~~e~~~-----~~~s-------~~~~F~yAw~Lv~S~-------------------~~~d~~~GI~lLe~l 64 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-----GSVS-------KSTQFEYAWCLVRTR-------------------YNDDIRKGIVLLEEL 64 (126)
T ss_dssp HHHHHHHHHHHHHHH-----SCCC-------HHHHHHHHHHHTTSS-------------------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-----CCCc-------HHHHHHHHHHHHcCC-------------------CHHHHHHHHHHHHHH
Confidence 345566677766652 2211 235577777777666 112445699999999
Q ss_pred hcCCCCCC-CchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 498 GNLKEPEE-PKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 498 l~l~~p~d-p~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
++ .+ |.. .-+.++.||..++++|+|++|+.+++..|+.+|++.++...-+.
T Consensus 65 ~~----~~~p~~---~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 65 LP----KGSKEE---QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp TT----TSCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred Hh----cCCcch---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 88 33 422 23567889999999999999999999999999999876654444
No 221
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.05 E-value=0.002 Score=58.69 Aligned_cols=64 Identities=16% Similarity=0.134 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNI---------NALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~---------~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
...+++....+++.|.|+.|+.....++....++. ++.+.+|++++.+|+|.+|+..|++|+..
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 34678889999999999999999999777654444 48899999999999999999999999874
No 222
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.03 E-value=0.0041 Score=67.15 Aligned_cols=54 Identities=11% Similarity=0.158 Sum_probs=45.7
Q ss_pred hhhccccCCCCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008246 358 KQLKISVENLTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQT 412 (572)
Q Consensus 358 ~~~ai~~~~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l 412 (572)
+++++..-|.+++.++..+..+.+.|+.++|...|++|++. |++...|+..+..
T Consensus 202 ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~ 255 (493)
T 2uy1_A 202 HNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLV 255 (493)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhh
Confidence 45677777788999999999999999999999999999999 9998877765554
No 223
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.68 E-value=0.037 Score=59.73 Aligned_cols=121 Identities=10% Similarity=0.012 Sum_probs=92.1
Q ss_pred cccHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhh
Q 008246 385 KERPIPLLQLALNKEP-DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQA 463 (572)
Q Consensus 385 ~~~A~~~l~~AL~~dP-~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g 463 (572)
.++|.+.|++..+..- -|...|..+-..|.+.|+.++|.+.|++..+. .-.|+ ...|..+-..+.+.|
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~---g~~Pd--------~~tyn~lI~~~~~~g 154 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF---GIQPR--------LRSYGPALFGFCRKG 154 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TCCCC--------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCc--------cceehHHHHHHHHCC
Confidence 5678889988777532 26788889999999999999999999988762 11121 234566667777888
Q ss_pred chhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 008246 464 AHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH- 542 (572)
Q Consensus 464 ~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l- 542 (572)
+.++|.+.|++..+. ...|+. ..+..+-.++.+.|+.++|.+++++.-+.
T Consensus 155 ----------------------~~~~A~~l~~~M~~~--G~~Pd~-----~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 155 ----------------------DADKAYEVDAHMVES--EVVPEE-----PELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp ----------------------CHHHHHHHHHHHHHT--TCCCCH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred ----------------------CHHHHHHHHHHHHhc--CCCCCH-----HHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 999999999999872 245543 34566888999999999999999998664
Q ss_pred -CCC
Q 008246 543 -NPQ 545 (572)
Q Consensus 543 -~P~ 545 (572)
.|+
T Consensus 206 ~~ps 209 (501)
T 4g26_A 206 RQVS 209 (501)
T ss_dssp SSBC
T ss_pred CCcC
Confidence 355
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.60 E-value=0.01 Score=51.56 Aligned_cols=91 Identities=11% Similarity=0.052 Sum_probs=72.7
Q ss_pred CCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHH
Q 008246 383 GDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEE---AVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC 459 (572)
Q Consensus 383 g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~e---A~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~ 459 (572)
.....+++.|.++++.++.+.++.+.+|+++...++.++ ++..++..+.. + + +.......|.+|..+
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-----~--~---p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-----G--S---KEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-----S--C---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----C--C---cchHHHHHHHHHHHH
Confidence 445667888999999999999999999999999888777 88888776641 1 1 112334678999999
Q ss_pred HHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchh
Q 008246 460 IRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSK 509 (572)
Q Consensus 460 ~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~ 509 (572)
++.| +|++|+++++.+++ .+|.+.
T Consensus 85 yklg----------------------~Y~~A~~~~~~lL~----~eP~n~ 108 (126)
T 1nzn_A 85 YRLK----------------------EYEKALKYVRGLLQ----TEPQNN 108 (126)
T ss_dssp HHTT----------------------CHHHHHHHHHHHHH----HCTTCH
T ss_pred HHhh----------------------hHHHHHHHHHHHHH----hCCCCH
Confidence 9999 99999999999999 456543
No 225
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.59 E-value=0.0097 Score=52.04 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 486 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 486 ~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
+..+++..++..++ .+|.. --+-++.||..+.++|+|++|+++.+..|+.+|++..+...-+.
T Consensus 58 d~~~GI~LLe~l~~----~~~~~---~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~ 120 (134)
T 3o48_A 58 DERLGVKILTDIYK----EAESR---RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM 120 (134)
T ss_dssp HHHHHHHHHHHHHH----HCGGG---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----cCcch---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 56789999999998 44432 22556789999999999999999999999999999886654444
No 226
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.51 E-value=0.013 Score=51.91 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHH
Q 008246 451 ASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNA 530 (572)
Q Consensus 451 a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~e 530 (572)
..++++.++.+.. ...+..+++..++..++ .+|... -+-++.||..++++|+|+
T Consensus 41 t~F~YAw~Lv~S~-------------------~~~di~~GI~LLe~l~~----~~~~~~---RdcLYyLAvg~ykl~~Y~ 94 (144)
T 1y8m_A 41 SRFNYAWGLIKST-------------------DVNDERLGVKILTDIYK----EAESRR---RECLYYLTIGCYKLGEYS 94 (144)
T ss_dssp HHHHHHHHHHHSS-------------------SHHHHHHHHHHHHHHHH----HCCSTH---HHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHcCC-------------------CHHHHHHHHHHHHHHHh----cCccch---hHHHHHHHHHHHHhhhHH
Confidence 4566777776666 22256789999999998 344322 245678999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 531 EAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 531 eA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
+|+++.+..|+.+|++.++...-+.
T Consensus 95 ~Ar~y~d~lL~~eP~n~QA~~Lk~~ 119 (144)
T 1y8m_A 95 MAKRYVDTLFEHERNNKQVGALKSM 119 (144)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 9999999999999999876654444
No 227
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.45 E-value=0.027 Score=55.20 Aligned_cols=56 Identities=23% Similarity=0.200 Sum_probs=52.8
Q ss_pred HHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 377 VKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 377 ~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
..+++.|+.++|++.++..++.+|.|++....|-+++.-.|++++|.+.++-+.++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999999999999988875
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.055 Score=49.83 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008246 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI 430 (572)
Q Consensus 367 ~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl 430 (572)
.|++..+.+| ++.|+++.|.+..++. ++..-|..||......|+++-|+.||+++-
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3677888877 6779999999987765 789999999999999999999999998765
No 229
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.34 E-value=0.082 Score=56.86 Aligned_cols=140 Identities=13% Similarity=0.021 Sum_probs=89.0
Q ss_pred cHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchh
Q 008246 387 RPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHN 466 (572)
Q Consensus 387 ~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~ 466 (572)
.....|++++...|.++..|+..+..+.+.|+.++|.+.|++|+. . |.+. .+ +...+... +.++ .
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~----~--P~~~----~l---~~~y~~~~-e~~~-~ 261 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE----M--SDGM----FL---SLYYGLVM-DEEA-V 261 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----H--CCSS----HH---HHHHHHHT-TCTH-H
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----C--CCcH----HH---HHHHHhhc-chhH-H
Confidence 357899999999999999999999999999999999999999997 1 5442 11 11111110 0000 0
Q ss_pred hHHHHH--------------------hhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHc
Q 008246 467 FFELVQ--------------------QGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 526 (572)
Q Consensus 467 ~~~a~~--------------------~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~ 526 (572)
+....+ +....+....+.++.+.|...|+++ +. |. . . ...+...|..-...
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~--~~-~-~----~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN--EG-V-G----PHVFIYCAFIEYYA 332 (493)
T ss_dssp HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--SC-C-C----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--CC-C-C----hHHHHHHHHHHHHH
Confidence 000000 0000112233467789999999999 51 21 1 1 12344445555545
Q ss_pred C-CHHHHHHHHHHHHHhCCCCHHHH
Q 008246 527 G-RNAEAEKYLRLAAAHNPQYNELL 550 (572)
Q Consensus 527 g-~~eeA~~~l~~aL~l~P~~~~~l 550 (572)
| +.+.|.+.|+++++..|+..+++
T Consensus 333 ~~d~~~ar~ife~al~~~~~~~~~~ 357 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKHPDSTLLK 357 (493)
T ss_dssp HCCSHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCChHHHHHHHHHHHHHCCCCHHHH
Confidence 5 69999999999999888876553
No 230
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.91 E-value=0.035 Score=50.43 Aligned_cols=110 Identities=9% Similarity=-0.006 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhh
Q 008246 404 NALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVS 483 (572)
Q Consensus 404 ~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~ 483 (572)
.+++.-...+...|.|+.|+-....++... ..+|+.. .+.....+..++|.+++..+
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~--~~~~~~~-sp~~~~~~l~~ladalf~~~-------------------- 77 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLS--NNNPELF-SPPQKYQLLVYHADSLFHDK-------------------- 77 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHSTTSS-CHHHHHHHHHHHHHHHHHTT--------------------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhh--cCCcccc-cHHHHHHHHHHHHHHHHccc--------------------
Confidence 345556677899999999999999988741 1222211 12233346788899999999
Q ss_pred hccHHHHHHHHHHHhcCCC--CCCCch---------------hhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008246 484 QEKWEEGIAHLERIGNLKE--PEEPKS---------------KAHYYDGLVVLASALCNVGRNAEAEKYLRL 538 (572)
Q Consensus 484 ~g~~~eAi~~l~kal~l~~--p~dp~~---------------~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~ 538 (572)
+|..|...|++++++.. +..+.. ...-.+..+.+|.||.++|++++|+..++.
T Consensus 78 --eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 78 --EYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp --CHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 99999999999875321 011100 000124567799999999999999998876
No 231
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.80 E-value=0.13 Score=55.42 Aligned_cols=136 Identities=12% Similarity=0.056 Sum_probs=97.3
Q ss_pred HHH-HHHHHHHHHhcCCcccHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhhhhc
Q 008246 369 PKE-LIALSVKFLSKGDKERPIPLLQLALNKE--PDNINALILMGQTQLQKG---------LLEEAVEYLECAISKLFLA 436 (572)
Q Consensus 369 ~~~-~~~lA~~~~~~g~~~~A~~~l~~AL~~d--P~~~~a~~~LG~l~~~~g---------~~~eA~~~~~rAl~~l~~~ 436 (572)
|+. +...-..+.+.|+.++|++.|++..+.. | |...|..+=.++...+ +.++|.+.|++..+. .
T Consensus 25 pe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~---G 100 (501)
T 4g26_A 25 PEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD---K 100 (501)
T ss_dssp HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT---T
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh---C
Confidence 444 3344456678999999999999998863 4 4566666655565444 378899999887762 1
Q ss_pred CCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHH
Q 008246 437 GHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGL 516 (572)
Q Consensus 437 ~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al 516 (572)
-.|+ ...|..+-.++.+.| +.++|.+.|++..+. ...|+. ..+
T Consensus 101 ~~Pd--------~~tyn~lI~~~~~~g----------------------~~~~A~~l~~~M~~~--g~~Pd~-----~ty 143 (501)
T 4g26_A 101 VVPN--------EATFTNGARLAVAKD----------------------DPEMAFDMVKQMKAF--GIQPRL-----RSY 143 (501)
T ss_dssp CCCC--------HHHHHHHHHHHHHHT----------------------CHHHHHHHHHHHHHT--TCCCCH-----HHH
T ss_pred CCCC--------HHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHc--CCCCcc-----cee
Confidence 1121 235666777788888 999999999998872 234542 345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CC
Q 008246 517 VVLASALCNVGRNAEAEKYLRLAAAHN--PQ 545 (572)
Q Consensus 517 ~~Lg~~l~~~g~~eeA~~~l~~aL~l~--P~ 545 (572)
..+-..|.+.|+.++|.+.|++..+.. |+
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence 567888999999999999999988764 65
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.33 E-value=0.16 Score=45.44 Aligned_cols=105 Identities=11% Similarity=0.085 Sum_probs=78.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCCc------ccHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 008246 361 KISVENLTPKELIALSVKFLSKGDK------ERPIPLLQLALNKEPD--------NINALILMGQTQLQKGLLEEAVEYL 426 (572)
Q Consensus 361 ai~~~~~~~~~~~~lA~~~~~~g~~------~~A~~~l~~AL~~dP~--------~~~a~~~LG~l~~~~g~~~eA~~~~ 426 (572)
.|-+.|.|++.+..........|+. ++-++.|++|+..-|- ++..|...|.. ...+|.++|.+.|
T Consensus 5 ~~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy 83 (161)
T 4h7y_A 5 SIMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYF 83 (161)
T ss_dssp -----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHH
T ss_pred ceeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHH
Confidence 4567788999999999999888998 8888999999998775 46777788765 6779999999999
Q ss_pred HHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcC
Q 008246 427 ECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNL 500 (572)
Q Consensus 427 ~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l 500 (572)
+.++.. +- . . .-.|...+.--.++| +.+.|.+.+.+++.+
T Consensus 84 ~~a~~~-----hK----k--F-AKiwi~~AqFEiRqg----------------------nl~kARkILg~AiG~ 123 (161)
T 4h7y_A 84 QMARAN-----CK----K--F-AFVHISFAQFELSQG----------------------NVKKSKQLLQKAVER 123 (161)
T ss_dssp HHHHHH-----CT----T--B-HHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHT
T ss_pred HHHHHH-----hH----H--H-HHHHHHHHHHHHHcc----------------------cHHHHHHHHHHHhcc
Confidence 999973 11 1 1 223444455555555 999999999999994
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.97 E-value=0.12 Score=45.65 Aligned_cols=73 Identities=10% Similarity=0.098 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCcc---cHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCC
Q 008246 365 ENLTPKELIALSVKFLSKGDKE---RPIPLLQLALNKEPD-NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPT 440 (572)
Q Consensus 365 ~~~~~~~~~~lA~~~~~~g~~~---~A~~~l~~AL~~dP~-~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~ 440 (572)
+..+++..|+.|..+....+.+ +++.+++..++.+|. .-+.+|.||..+++.|+|++|..+.+..++. .|+
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~-----eP~ 109 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH-----ERN 109 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT-----CCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----CCC
Confidence 3678999999999999876554 699999999999994 6789999999999999999999999999986 777
Q ss_pred Ch
Q 008246 441 EP 442 (572)
Q Consensus 441 ~~ 442 (572)
+.
T Consensus 110 n~ 111 (144)
T 1y8m_A 110 NK 111 (144)
T ss_dssp CH
T ss_pred cH
Confidence 75
No 234
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.94 E-value=0.18 Score=56.69 Aligned_cols=47 Identities=21% Similarity=0.152 Sum_probs=39.7
Q ss_pred HHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008246 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI 430 (572)
Q Consensus 379 ~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl 430 (572)
++..|++++|.+..+ .-++...|..+|..+.+.|+++.|+++|.++-
T Consensus 662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 456788888887743 45788999999999999999999999998764
No 235
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.80 E-value=0.093 Score=45.80 Aligned_cols=74 Identities=9% Similarity=0.079 Sum_probs=63.9
Q ss_pred cCCCCHHHHHHHHHHHHhcCCc---ccHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCC
Q 008246 364 VENLTPKELIALSVKFLSKGDK---ERPIPLLQLALNKEPD-NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHP 439 (572)
Q Consensus 364 ~~~~~~~~~~~lA~~~~~~g~~---~~A~~~l~~AL~~dP~-~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P 439 (572)
-+..++++.++.|..+....+. .+++.+++..++.+|. .-+.++.||..+.+.|+|++|..+.++.++. .|
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~-----eP 109 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH-----ER 109 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----CT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-----CC
Confidence 4556789999999999887654 3699999999999994 5899999999999999999999999999975 77
Q ss_pred CCh
Q 008246 440 TEP 442 (572)
Q Consensus 440 ~~~ 442 (572)
++.
T Consensus 110 ~N~ 112 (134)
T 3o48_A 110 NNK 112 (134)
T ss_dssp TCH
T ss_pred CCH
Confidence 765
No 236
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.20 E-value=0.46 Score=43.17 Aligned_cols=125 Identities=15% Similarity=0.121 Sum_probs=84.5
Q ss_pred HHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHH
Q 008246 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVA 458 (572)
Q Consensus 379 ~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~ 458 (572)
..+-.+++.++-+-.- +-|..++-...++.++...|++..|+-++.+.- . ..+.+.-..|
T Consensus 12 s~kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~lN----------------T-~Ts~YYk~LC 71 (242)
T 3kae_A 12 SIRYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHKLN----------------T-CTSKYYESLC 71 (242)
T ss_dssp HHHTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHTCC----------------B-HHHHHHHHHH
T ss_pred HhhcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHhcc----------------h-HHHHHHHHHH
Confidence 3445666666433222 345555777888999999999998887763211 0 1245666788
Q ss_pred HHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCc-------------hhhhhhHHHHHHHHHHHH
Q 008246 459 CIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPK-------------SKAHYYDGLVVLASALCN 525 (572)
Q Consensus 459 ~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~-------------~~~~~~~al~~Lg~~l~~ 525 (572)
+.+.. +|..|+..+++.++-.--+||+ +.+ ++ ...+|.++.+
T Consensus 72 y~klK----------------------dYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkE-fF--y~l~a~lltq 126 (242)
T 3kae_A 72 YKKKK----------------------DYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEE-FF--ESLLGDLCTL 126 (242)
T ss_dssp HHHTT----------------------CHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHH-HH--HHHHHHHHHH
T ss_pred HHHHH----------------------HHHHHHHHHHHHHhcccccCcccccccceeeeccchHH-HH--HHHHHHHHHH
Confidence 88888 9999999999999411112332 222 22 3568999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH
Q 008246 526 VGRNAEAEKYLRLAAAHNPQYNE 548 (572)
Q Consensus 526 ~g~~eeA~~~l~~aL~l~P~~~~ 548 (572)
.|+.+||+.++......+|-+..
T Consensus 127 ~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 127 SGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp TTCHHHHHHHHHHHHHHCCCHHH
T ss_pred hcCHHHhhhHhhhhcCCccccch
Confidence 99999999999999998886543
No 237
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.41 E-value=0.15 Score=54.88 Aligned_cols=61 Identities=15% Similarity=0.053 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
-+..+|....-...++.|..+|++|+.++|++...++.||.++...|+.-+|+-+|.|++.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 4567888888889999999999999999999999999999999999999999999999985
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.38 E-value=0.6 Score=48.42 Aligned_cols=46 Identities=24% Similarity=0.164 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008246 486 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 539 (572)
Q Consensus 486 ~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~a 539 (572)
++++|+..+++++. .+|.+. .++..+-.+|...|+..+|++.|++.
T Consensus 186 ~~~~a~~~l~~~~~----~~P~~E----~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 186 RASAVIAELEALTF----EHPYRE----PLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp CHHHHHHHHHHHHH----HSTTCH----HHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH----hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777777776 455433 23445666777777777777777664
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.38 E-value=0.24 Score=55.89 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECA 429 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rA 429 (572)
...+...+..+..+|+++-|+++.++|+..-|.+...|+.|+.+|...|+++.|+-.+.-.
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4567788999999999999999999999999999999999999999999999999776543
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.25 E-value=0.31 Score=50.67 Aligned_cols=63 Identities=10% Similarity=-0.057 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
.+...++..+...|++++|+..++++++.+|-+-.+|..+-.++.+.|+..+|++.|++..+.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445667788889999999999999999999999999999999999999999999999988764
No 241
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.90 E-value=0.27 Score=52.75 Aligned_cols=153 Identities=10% Similarity=0.039 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHH-----------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008246 373 IALSVKFLSKGDKERPIPLLQLAL-----------NKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL-----------~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~ 441 (572)
+..-..++.++++++|..+-...+ .+|+=.+.+|+..+.++...|+..+..........+
T Consensus 140 lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~i--------- 210 (523)
T 4b4t_S 140 LLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIIL--------- 210 (523)
T ss_dssp ---------------------------------------------------------------CHHHHHHH---------
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhH---------
Confidence 344445667889999888776554 236667888888888888888877643322222211
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHH
Q 008246 442 PEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLAS 521 (572)
Q Consensus 442 ~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~ 521 (572)
.... ++......-+.+......+..+..+.|...+.|++|.....++.- |....+...+..-++.+|.
T Consensus 211 --r~~L-------l~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f---P~~~~sn~q~~rY~YY~GR 278 (523)
T 4b4t_S 211 --RSTM-------MKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEY---PHTDVSSSLEARYFFYLSK 278 (523)
T ss_dssp --HTHH-------HHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS---CTTTSCHHHHHHHHHHHHH
T ss_pred --HHHH-------HHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC---CcccCCHHHHHHHHHHHHH
Confidence 0000 000000000111111112222344556666699999999999853 3321122223344577999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 522 ALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 522 ~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
++.-+++|.+|.+++..|++.-|..
T Consensus 279 I~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 279 INAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHhccHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999987753
No 242
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.93 E-value=2.6 Score=44.22 Aligned_cols=65 Identities=20% Similarity=0.176 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEP---DNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP---~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
-.+.+..+|..+.+.|++++|.++|.++...-. .-.+.+...-.++...+++..+..++++|-..
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 345678999999999999999999999887643 23688888889999999999999999999875
No 243
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.30 E-value=0.41 Score=50.37 Aligned_cols=110 Identities=17% Similarity=-0.012 Sum_probs=72.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHh
Q 008246 400 PDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLL 479 (572)
Q Consensus 400 P~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~ 479 (572)
..-.+++..+|..|.+.|++++|.++|.++... +. .+.. . ...+...-.++...+
T Consensus 128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~--~~-~~~~--k----id~~l~~irl~l~~~---------------- 182 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSK--AI-STGA--K----IDVMLTIARLGFFYN---------------- 182 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHH--HT-CCCS--H----HHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cC-ChHH--H----HHHHHHHHHHHHHhc----------------
Confidence 334568899999999999999999999998863 11 1111 1 123344444555555
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCC-CCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008246 480 SFVSQEKWEEGIAHLERIGNLKEP-EEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 480 ~~~~~g~~~eAi~~l~kal~l~~p-~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~ 543 (572)
++..+...++++..+.+. .|+. .........|.++...++|.+|..+|..++.-.
T Consensus 183 ------d~~~~~~~~~ka~~~~~~~~d~~---~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 183 ------DQLYVKEKLEAVNSMIEKGGDWE---RRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp ------CHHHHHHHHHHHHHHHTTCCCTH---HHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred ------cHHHHHHHHHHHHHhhhcCCCHH---HHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 888888888888653211 1221 111223456777888899999999888876543
No 244
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.43 E-value=0.83 Score=44.73 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=55.2
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 480 SFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 480 ~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
.+++.|+.++|++.++..++ .+|.+. +....|...++-.|+++.|.+.++.+.+++|+.......++.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR----~~P~da----~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~ 73 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIK----ASPKDA----SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRH 73 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHH----TCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHH----hCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence 35566799999999999999 566543 445668889999999999999999999999998875544433
No 245
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.27 E-value=4.3 Score=42.08 Aligned_cols=105 Identities=12% Similarity=-0.024 Sum_probs=71.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhcc
Q 008246 407 ILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEK 486 (572)
Q Consensus 407 ~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~ 486 (572)
..||.+|+..|+|.+|.+.+.+..+-+ .. .+ +.......+..-...|...+ +
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~--~~-~d---d~~~llev~lle~~~~~~~~----------------------n 154 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLREL--KK-LD---DKNLLVEVQLLESKTYHALS----------------------N 154 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH--TT-SS---CTHHHHHHHHHHHHHHHHTT----------------------C
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHH--hc-cc---cchhHHHHHHHHHHHHHHhc----------------------c
Confidence 378999999999999999999988742 11 11 12233334444455566666 9
Q ss_pred HHHHHHHHHHHhcCCCC--CCCchhhhhhHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Q 008246 487 WEEGIAHLERIGNLKEP--EEPKSKAHYYDGLVVLASALC-NVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 487 ~~eAi~~l~kal~l~~p--~dp~~~~~~~~al~~Lg~~l~-~~g~~eeA~~~l~~aL~l 542 (572)
+.++...|.++....+. -+|. ........-|..+. ..++|.+|..+|-++++-
T Consensus 155 ~~k~k~~l~~a~~~~~ai~~~p~---i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 155 LPKARAALTSARTTANAIYCPPK---VQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHH---HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCCHH---HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 99999999888763211 1222 12223345688888 899999999999888643
No 246
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.97 E-value=2.2 Score=47.61 Aligned_cols=56 Identities=14% Similarity=-0.067 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008246 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAI 430 (572)
Q Consensus 367 ~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl 430 (572)
.++..+-.+|..+.+.|+++.|+++|.++- |.+ .+..+|...|+.+.....-+.|.
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~-----d~~---~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAH-----DLE---SLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-----CHH---HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc-----Chh---hhHHHHHHcCCHHHHHHHHHHHH
Confidence 356788999999999999999999999872 222 23444555666666555544444
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.86 E-value=4.1 Score=42.91 Aligned_cols=106 Identities=13% Similarity=0.059 Sum_probs=63.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhc
Q 008246 406 LILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQE 485 (572)
Q Consensus 406 ~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g 485 (572)
...|+.+|...|++.+|.+.+.....- +.+. + +.......+......+...+
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~E--t~~~--~--~~~~kve~~l~q~rl~l~~~---------------------- 191 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVE--TYGS--M--EMSEKIQFILEQMELSILKG---------------------- 191 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HCSS--S--CHHHHHHHHHHHHHHHHHHT----------------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH--HHhc--c--cHHHHHHHHHHHHHHHHHCC----------------------
Confidence 356788888888888888888766531 1111 1 11111122333344455555
Q ss_pred cHHHHHHHHHHHhc--CCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 486 KWEEGIAHLERIGN--LKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 486 ~~~eAi~~l~kal~--l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l 542 (572)
++..|...++++.. ...+.+|. ....-+...|..+...++|.+|..+|.++++.
T Consensus 192 d~~~a~~~~~ki~~~~~~~~~~~~---lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 192 DYSQATVLSRKILKKTFKNPKYES---LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCHH---HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhcccCCcHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999998888642 11112222 22233456788889999999999999888653
No 248
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=87.20 E-value=3.4 Score=44.28 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhh
Q 008246 405 ALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQA 463 (572)
Q Consensus 405 a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g 463 (572)
.+..||.+......++.|..+|++|..+ .|+.. ..++.+|.+....|
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~-----~P~~G-------~~~nqLavla~~~~ 200 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQL-----VPSNG-------QPYNQLAILASSKG 200 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTBS-------HHHHHHHHHHHHTT
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHh-----CCCCC-------chHHHHHHHHhccc
Confidence 6788999999999999999999999986 77764 45778899888877
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.11 E-value=5.2 Score=42.09 Aligned_cols=91 Identities=11% Similarity=-0.004 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhh----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCC
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNK----EPD--NINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTE 441 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~----dP~--~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~ 441 (572)
.+.....+|..+.+.|++.+|...++..... +.. -.+.+..-.++|...+++.+|...++++.... ...+..
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~--~~~~~~ 213 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKT--FKNPKY 213 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHSSCC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh--cccCCc
Confidence 3556688999999999999999999887642 211 15778888899999999999999999986421 111211
Q ss_pred hhhhhHHHHHHHHHHHHHHHhh
Q 008246 442 PEAIDLLIVASQWSGVACIRQA 463 (572)
Q Consensus 442 ~~~~~~~~~a~~~lG~~~~~~g 463 (572)
++.....+...|..+...+
T Consensus 214 ---~~lk~~~~~~~~~~~~~e~ 232 (445)
T 4b4t_P 214 ---ESLKLEYYNLLVKISLHKR 232 (445)
T ss_dssp ---HHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHHHHHHhh
Confidence 1222223445566666666
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.45 E-value=3.7 Score=42.57 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 373 IALSVKFLSKGDKERPIPLLQLALNKEPD------NINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL~~dP~------~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
..+|..+++.|++.+|...+.+.++.-.+ -.+.+..-.++|...|++.++...|.+|...
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 58899999999999999999888874211 2467777788999999999999999999874
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.22 E-value=2.9 Score=49.62 Aligned_cols=146 Identities=11% Similarity=-0.007 Sum_probs=81.5
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHH
Q 008246 374 ALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQ 453 (572)
Q Consensus 374 ~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~ 453 (572)
.+...+...|.++-|.+ .+...|.++...|.+|.+++..|++++|.++|++|..-+ ...+. ....... ..
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~----~~~~~-l~~~~~~-~~ 886 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVL----YSHTS-QFAVLRE-FQ 886 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSC----TTCCC-SCSSHHH-HH
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh----cccch-hhhhhcc-cc
Confidence 34555666777766543 455678888888999999999999999999999986311 00000 0000000 00
Q ss_pred HHHH-HHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHH
Q 008246 454 WSGV-ACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEA 532 (572)
Q Consensus 454 ~lG~-~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA 532 (572)
.+.. .....+...| +.-....|.+.+.++.+++..+.|++..+++++... ...+..+-..+.+.|+|++|
T Consensus 887 ~~~~~~~~~~~l~~Y------Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~---~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 887 EIAEKYHHQNLLSCY------YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLS---IAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp HHHHTTTSCCSSHHH------HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHH---HHHHHHHHHHHHHHCCSGGG
T ss_pred cccccccccccHHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhH---HHHHHHHHHHHHhhCCHHHH
Confidence 0000 0000000000 000122344455888899988888875444333211 12345566778888999999
Q ss_pred HHHHHH
Q 008246 533 EKYLRL 538 (572)
Q Consensus 533 ~~~l~~ 538 (572)
...+..
T Consensus 958 y~aL~~ 963 (1139)
T 4fhn_B 958 HVALMV 963 (1139)
T ss_dssp GHHHHH
T ss_pred HHHHHh
Confidence 776643
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.84 E-value=5 Score=45.16 Aligned_cols=130 Identities=12% Similarity=0.021 Sum_probs=76.6
Q ss_pred cCC-cccHHHHHHHHHhhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhhh--h-cCCCCChhhhhHHHHHHHH
Q 008246 382 KGD-KERPIPLLQLALNKEPDNINALILMGQTQL---QKGLLEEAVEYLECAISKLF--L-AGHPTEPEAIDLLIVASQW 454 (572)
Q Consensus 382 ~g~-~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~---~~g~~~eA~~~~~rAl~~l~--~-~~~P~~~~~~~~~~~a~~~ 454 (572)
.|+ ++.|+..+++..+.+|.... ++..+.+.. ...+--+|+..+.++++.+. . +..+.+. +.. .....
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~---~~~-~~~~~ 335 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA---DSA-RLMNC 335 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH---HHH-HHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc---ccc-cccCc
Confidence 455 47799999999999997753 333333322 22344567777777764110 0 0011111 000 00000
Q ss_pred HHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHH
Q 008246 455 SGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEK 534 (572)
Q Consensus 455 lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~ 534 (572)
.+..+..+ ++-+.++|+|+-|+++.++|+.+ -|. .+..|..|+.+|..+|+++.|+-
T Consensus 336 ~~~LL~~Q---------------a~FLl~K~~~elAL~~Ak~AV~~----aPs----eF~tW~~La~vYi~l~d~e~ALL 392 (754)
T 4gns_B 336 MSDLLNIQ---------------TNFLLNRGDYELALGVSNTSTEL----ALD----SFESWYNLARCHIKKEEYEKALF 392 (754)
T ss_dssp HHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHH----CSS----CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHH---------------HHHHhccCcHHHHHHHHHHHHhc----Cch----hhHHHHHHHHHHHHhccHHHHHH
Confidence 11111111 12345577999999999999994 343 24678889999999999999997
Q ss_pred HHHHH
Q 008246 535 YLRLA 539 (572)
Q Consensus 535 ~l~~a 539 (572)
.+.-.
T Consensus 393 tLNSc 397 (754)
T 4gns_B 393 AINSM 397 (754)
T ss_dssp HHHHS
T ss_pred HHhcC
Confidence 76554
No 253
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=82.86 E-value=17 Score=42.28 Aligned_cols=104 Identities=12% Similarity=0.009 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhh
Q 008246 403 INALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFV 482 (572)
Q Consensus 403 ~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~ 482 (572)
-..+..+=..|.+.|+.++|.+.|++..+.......| + ...|..+-..+++.|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P------d--vvTYNtLI~Glck~G------------------- 179 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL------T--LDMYNAVMLGWARQG------------------- 179 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC------C--HHHHHHHHHHHHHHT-------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC------C--HhHHHHHHHHHHhCC-------------------
Confidence 3456777788999999999999997654310000012 1 235677777888888
Q ss_pred hhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhC
Q 008246 483 SQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRN-AEAEKYLRLAAAHN 543 (572)
Q Consensus 483 ~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~-eeA~~~l~~aL~l~ 543 (572)
+.++|.+.|++..+ ....|+. -.+..+-.++.+.|+. ++|.+++++..+..
T Consensus 180 ---~~~eA~~Lf~eM~~--~G~~PDv-----vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 180 ---AFKELVYVLFMVKD--AGLTPDL-----LSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp ---CHHHHHHHHHHHHH--TTCCCCH-----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHHHH--cCCCCcH-----HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 99999999999987 2355643 2344566788898985 78899999988865
No 254
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.78 E-value=5.4 Score=42.75 Aligned_cols=110 Identities=9% Similarity=0.016 Sum_probs=57.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhcCCcccH----------HHHHHHHH-----hhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 008246 361 KISVENLTPKELIALSVKFLSKGDKERP----------IPLLQLAL-----NKEPD-NINALILMGQTQLQKGLLEEAVE 424 (572)
Q Consensus 361 ai~~~~~~~~~~~~lA~~~~~~g~~~~A----------~~~l~~AL-----~~dP~-~~~a~~~LG~l~~~~g~~~eA~~ 424 (572)
.-..|.+.+..|+..+..+...|+..+. ...+..++ +.|.+ .+..+..+=+.|...+.+++|..
T Consensus 173 rrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~ 252 (523)
T 4b4t_S 173 LRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASD 252 (523)
T ss_dssp ------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHH
Confidence 4466777888888888887777776653 22222333 33443 25677778889999999999999
Q ss_pred HHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc
Q 008246 425 YLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN 499 (572)
Q Consensus 425 ~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~ 499 (572)
...++. .|..........+-++.+|.++.-++ +|.+|.+++..|++
T Consensus 253 lvsk~~-------fP~~~~sn~q~~rY~YY~GRI~a~q~----------------------~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 253 FISKLE-------YPHTDVSSSLEARYFFYLSKINAIQL----------------------DYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHC-------SCTTTSCHHHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHTS
T ss_pred HHhcCc-------CCcccCCHHHHHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHH
Confidence 999886 45431122223455677799888888 99999999999998
No 255
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=81.36 E-value=17 Score=42.32 Aligned_cols=96 Identities=16% Similarity=0.033 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhh
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALN-----KEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEA 444 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~-----~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~ 444 (572)
..+..+-..+...|+.++|...|++.-+ ..| |...|..|=..|.+.|+.++|.+.|++-.+. .-.|+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~---G~~PD---- 199 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDA---GLTPD---- 199 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TCCCC----
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCc----
Confidence 3567778888999999999999977543 244 6788999999999999999999999998862 11222
Q ss_pred hhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhcc-HHHHHHHHHHHhc
Q 008246 445 IDLLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEK-WEEGIAHLERIGN 499 (572)
Q Consensus 445 ~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~-~~eAi~~l~kal~ 499 (572)
...|..+-.++.+.| + .++|.+.|++..+
T Consensus 200 ----vvTYntLI~glcK~G----------------------~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 200 ----LLSYAAALQCMGRQD----------------------QDAGTIERCLEQMSQ 229 (1134)
T ss_dssp ----HHHHHHHHHHHHHHT----------------------CCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhCC----------------------CcHHHHHHHHHHHHH
Confidence 234555666677777 6 4788899999887
No 256
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=80.33 E-value=34 Score=31.09 Aligned_cols=64 Identities=20% Similarity=0.208 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHh-----------------hCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALN-----------------KEPDNINAL-ILMGQTQLQKGLLEEAVEYLECA 429 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~-----------------~dP~~~~a~-~~LG~l~~~~g~~~eA~~~~~rA 429 (572)
+....+..+.++....++..|+..+++.++ .||.|-+-. ..+|.++.+.|+.+||+.+|.+.
T Consensus 61 T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 61 TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 355678889999999999999999999993 235565544 46899999999999999999887
Q ss_pred HH
Q 008246 430 IS 431 (572)
Q Consensus 430 l~ 431 (572)
..
T Consensus 141 f~ 142 (242)
T 3kae_A 141 FG 142 (242)
T ss_dssp HH
T ss_pred cC
Confidence 75
No 257
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=79.82 E-value=16 Score=40.12 Aligned_cols=128 Identities=10% Similarity=-0.022 Sum_probs=73.5
Q ss_pred HhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHH
Q 008246 380 LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVAC 459 (572)
Q Consensus 380 ~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~ 459 (572)
...+...++..++.+......++.. ..-++...++.|+++.|..+|++.-. .. ....++.||+|.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~~d~~~a~~~~~~l~~---------~~---~~~~r~~YW~~ra~ 329 (618)
T 1qsa_A 263 MGNDVTDEQAKWRDDAIMRSQSTSL-IERRVRMALGTGDRRGLNTWLARLPM---------EA---KEKDEWRYWQADLL 329 (618)
T ss_dssp CSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHHHHHHHTCHHHHHHHHHHSCT---------TG---GGSHHHHHHHHHHH
T ss_pred HHcCCChHHHHHHHhccccCCChHH-HHHHHHHHHHCCCHHHHHHHHHHccc---------cc---cccHhHHHHHHHHH
Confidence 3344456777777776655444433 33334445677999999988855331 11 11235678889888
Q ss_pred HHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhc------------CCCCCC-------Cchh-hhhhHHHHHH
Q 008246 460 IRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGN------------LKEPEE-------PKSK-AHYYDGLVVL 519 (572)
Q Consensus 460 ~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~------------l~~p~d-------p~~~-~~~~~al~~L 519 (572)
...| +.++|...|+++.+ |..|.. +... ..........
T Consensus 330 ~~~g----------------------~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r 387 (618)
T 1qsa_A 330 LERG----------------------REAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMAR 387 (618)
T ss_dssp HHTT----------------------CHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHH
T ss_pred HHcC----------------------CHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHH
Confidence 8888 55556555555543 111100 0000 0011123446
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 008246 520 ASALCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 520 g~~l~~~g~~eeA~~~l~~aL~l 542 (572)
+..+...|+..+|...+..+++.
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHCCChhhHHHHHHHHHhc
Confidence 67788899999998888877654
No 258
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=77.69 E-value=2.1 Score=33.13 Aligned_cols=45 Identities=22% Similarity=0.218 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 511 HYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 511 ~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
.|+---..+|..+...|++++|..+|-+|+..-|+=.+++.-+.+
T Consensus 15 ~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~ 59 (73)
T 3ax2_A 15 KFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ 59 (73)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 444455679999999999999999999999999998888877665
No 259
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=75.44 E-value=20 Score=39.35 Aligned_cols=129 Identities=17% Similarity=0.153 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH-HHHHHHHHH---HHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhh
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNI-NALILMGQT---QLQKGLLEEAVEYLECAISKLFLAGHPTEPEAID 446 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~-~a~~~LG~l---~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~ 446 (572)
..+..+...+...+.+.|...+.+.-+...-+. +.+...+.+ +...+...++..++.++.. .+.+. .
T Consensus 216 ~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~------~~~~~---~ 286 (618)
T 1qsa_A 216 QMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM------RSQST---S 286 (618)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH------TCCCH---H
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc------cCCCh---H
Confidence 355666666677788899999988765443333 332233333 3344446688888887654 22221 1
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHc
Q 008246 447 LLIVASQWSGVACIRQAAHNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNV 526 (572)
Q Consensus 447 ~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~ 526 (572)
. .....+. ..+.| ++++|..++++.-. ++... ....+.+|.++.+.
T Consensus 287 -~--~e~~~r~-Alr~~----------------------d~~~a~~~~~~l~~-----~~~~~---~r~~YW~~ra~~~~ 332 (618)
T 1qsa_A 287 -L--IERRVRM-ALGTG----------------------DRRGLNTWLARLPM-----EAKEK---DEWRYWQADLLLER 332 (618)
T ss_dssp -H--HHHHHHH-HHHHT----------------------CHHHHHHHHHHSCT-----TGGGS---HHHHHHHHHHHHHT
T ss_pred -H--HHHHHHH-HHHCC----------------------CHHHHHHHHHHccc-----ccccc---HhHHHHHHHHHHHc
Confidence 1 1122233 34567 99999999987644 22111 13456689999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 008246 527 GRNAEAEKYLRLAAAH 542 (572)
Q Consensus 527 g~~eeA~~~l~~aL~l 542 (572)
|+.++|..+|+++.+.
T Consensus 333 g~~~~a~~~~~~~a~~ 348 (618)
T 1qsa_A 333 GREAEAKEILHQLMQQ 348 (618)
T ss_dssp TCHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHhcC
Confidence 9999999999998763
No 260
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=74.31 E-value=14 Score=42.77 Aligned_cols=55 Identities=13% Similarity=-0.022 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
..+...+...|.++- .++.+..-|.++-.-|.+|.+|+..|++++|.++|++|..
T Consensus 814 ~~l~~~L~~~~~~~~----a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 814 TELVEKLFLFKQYNA----CMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHHHHHHHHTTCHHH----HHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhcHHHH----HHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 345566666776654 3556778888988899999999999999999999999873
No 261
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=72.47 E-value=3.8 Score=33.35 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=40.4
Q ss_pred CCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhccc
Q 008246 503 PEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAHNPQYNELLEQLEN 555 (572)
Q Consensus 503 p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~~~l~~l~~ 555 (572)
|.|+.....|+---+.+|..+...|++++|..+|-+|+..-|+=.+++.-+.+
T Consensus 10 ~~d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~q~ 62 (95)
T 1om2_A 10 LKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ 62 (95)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34444455566667789999999999999999999999998886655554433
No 262
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=72.03 E-value=11 Score=33.06 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=52.3
Q ss_pred HHHHHHHHH-HhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 371 ELIALSVKF-LSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 371 ~~~~lA~~~-~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
.++.+|... ..+|+.|+=.+.++..+.-++-+++.++.+|.+|.+.|+..+|.+.+.+|-+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 577777765 4778989989999988888888899999999999999999999999999986
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=68.63 E-value=29 Score=40.91 Aligned_cols=91 Identities=10% Similarity=0.083 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHHHHHh---hC--------------------CCCHHHHHHHHHHHHHcCCHHHH
Q 008246 366 NLTPKELIALSVKFLSKGDKERPIPLLQLALN---KE--------------------PDNINALILMGQTQLQKGLLEEA 422 (572)
Q Consensus 366 ~~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~---~d--------------------P~~~~a~~~LG~l~~~~g~~~eA 422 (572)
+.++...|.+|..++..|++++|..+|++|-. .+ ...+.-|+....++.+.|.++.+
T Consensus 839 ~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~v 918 (1139)
T 4fhn_B 839 NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDA 918 (1139)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHH
T ss_pred cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHH
Confidence 34566779999999999999999999998732 11 11234456677788899999999
Q ss_pred HHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhh
Q 008246 423 VEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQA 463 (572)
Q Consensus 423 ~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g 463 (572)
++.-+.|++. ..+++. +.....|..+-..+...|
T Consensus 919 i~fa~lAi~~----~~~~~~---~~~~~l~~~iFk~~L~l~ 952 (1139)
T 4fhn_B 919 LEFSLLADAS----KETDDE---DLSIAITHETLKTACAAG 952 (1139)
T ss_dssp HHHHHHHHHH----CCSCCH---HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHh----ccCCCh---hhHHHHHHHHHHHHHhhC
Confidence 9999999984 122322 111123455555666667
No 264
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=63.85 E-value=75 Score=28.74 Aligned_cols=106 Identities=8% Similarity=-0.012 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhh-hh---
Q 008246 401 DNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQG-QL--- 476 (572)
Q Consensus 401 ~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~-~~--- 476 (572)
+|++..+.+ ..+.|+++.|.+..++.- . ...|..+|......|+.+..+-+-.. ..
T Consensus 6 ~D~~~rF~L---AL~lg~l~~A~e~a~~l~--------------~---~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~ 65 (177)
T 3mkq_B 6 QDPHIRFDL---ALEYGNLDAALDEAKKLN--------------D---SITWERLIQEALAQGNASLAEMIYQTQHSFDK 65 (177)
T ss_dssp SCHHHHHHH---HHHTTCHHHHHHHHHHHC--------------C---HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHH
T ss_pred CChHHHHHH---HHhcCCHHHHHHHHHHhC--------------C---HHHHHHHHHHHHHcCChHHHHHHHHHhCCHHH
Confidence 455666655 578999999998865321 1 12478889999999954443321111 11
Q ss_pred hHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008246 477 KLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLA 539 (572)
Q Consensus 477 ~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~a 539 (572)
..-.|...|+.+.-.+.-+.+.. ..- +.....++..+|+++++++.|.+.
T Consensus 66 L~~Ly~~tg~~e~L~kla~iA~~----~g~---------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 66 LSFLYLVTGDVNKLSKMQNIAQT----RED---------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH----TTC---------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH----Ccc---------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 11123445555444444444443 111 112355677889999999998663
No 265
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=61.41 E-value=28 Score=31.09 Aligned_cols=67 Identities=4% Similarity=0.045 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCC------HHHHHH---HHHHHHHcCCHHHHHHHHHHHHHhh
Q 008246 367 LTPKELIALSVKFLSKGDKERPIPLLQLALNKEPDN------INALIL---MGQTQLQKGLLEEAVEYLECAISKL 433 (572)
Q Consensus 367 ~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~------~~a~~~---LG~l~~~~g~~~eA~~~~~rAl~~l 433 (572)
.+....+..|..+++.|+|=+|-+.++.+-...++. ..+++. -|..+.+.|+..-|...+++|+..+
T Consensus 30 ~~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L 105 (161)
T 2ijq_A 30 ETLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYF 105 (161)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 456677889999999999999999999999987665 222223 3345678999999999999999853
No 266
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=57.14 E-value=33 Score=30.07 Aligned_cols=143 Identities=17% Similarity=0.102 Sum_probs=74.9
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHH
Q 008246 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVAS 452 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~ 452 (572)
+..|......|..++..+...+...-.+-.-.-|+.--.+-.. +=+ +.-+.++.+ |.-.|...-..+
T Consensus 11 LmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a--~C~----y~v~vLd~I---GkiFDis~C~Nl---- 77 (172)
T 1wy6_A 11 LMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESI--DCR----YMFQVLDKI---GSYFDLDKCQNL---- 77 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHC--CHH----HHHHHHHHH---GGGSCGGGCSCT----
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhh--chh----HHHHHHHHH---hhhcCcHhhhcH----
Confidence 4567777788888888888888888777666666544332111 000 111111100 000000000000
Q ss_pred HHHHHHHHHhhc-hhhHHHHHhhhhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHH
Q 008246 453 QWSGVACIRQAA-HNFFELVQQGQLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAE 531 (572)
Q Consensus 453 ~~lG~~~~~~g~-~~~~~a~~~~~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~ee 531 (572)
-..-.++.+.|. ++|. -+....+..+|+-|+-.+.+...+. .++-+ ...++.+|.+|.+.|+..+
T Consensus 78 KrVi~C~~~~n~~se~v------d~ALd~lv~~~KkDqLdki~~~~l~----n~~~~----~~~l~kia~Ay~Klg~~r~ 143 (172)
T 1wy6_A 78 KSVVECGVINNTLNEHV------NKALDILVIQGKRDKLEEIGREILK----NNEVS----ASILVAIANALRRVGDERD 143 (172)
T ss_dssp HHHHHHHHHTTCCCHHH------HHHHHHHHHTTCHHHHHHHHHHHC------CCSC----HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhcchHHHH------HHHHHHHHHhccHhHHHHHHHHHhc----cCCCC----hHHHHHHHHHHHHhcchhh
Confidence 000112222220 0000 1123445666788887777777655 22211 2567789999999999999
Q ss_pred HHHHHHHHHHh
Q 008246 532 AEKYLRLAAAH 542 (572)
Q Consensus 532 A~~~l~~aL~l 542 (572)
|.+.+++|.+.
T Consensus 144 a~eLl~~AC~k 154 (172)
T 1wy6_A 144 ATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999999764
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=55.08 E-value=1e+02 Score=30.46 Aligned_cols=24 Identities=25% Similarity=0.097 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 008246 514 DGLVVLASALCNVGRNAEAEKYLR 537 (572)
Q Consensus 514 ~al~~Lg~~l~~~g~~eeA~~~l~ 537 (572)
+.+..+|..|.+.|++.+|+.+|-
T Consensus 135 ~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 135 YLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHH
Confidence 567789999999999999999884
No 268
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=52.15 E-value=15 Score=40.75 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 008246 368 TPKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLE 420 (572)
Q Consensus 368 ~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~ 420 (572)
-.+..+..|..++..|++.-|.+..+.++..||+|.+|...++.+|.+.|.-.
T Consensus 448 g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 448 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 35667888999999999999999999999999999999999999998877543
No 269
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=51.70 E-value=2e+02 Score=28.79 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 008246 514 DGLVVLASALCNVGRNAEAEKYLR 537 (572)
Q Consensus 514 ~al~~Lg~~l~~~g~~eeA~~~l~ 537 (572)
+.+..+|..|.+.|++.+|+.+|-
T Consensus 137 ~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 137 ELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHccCCHHHHHHHHH
Confidence 566789999999999999999983
No 270
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=46.94 E-value=1.1e+02 Score=30.53 Aligned_cols=34 Identities=9% Similarity=0.071 Sum_probs=23.4
Q ss_pred HHHHcCCH---HHHHHHHHHHHHhCC-CCHHHHHhccc
Q 008246 522 ALCNVGRN---AEAEKYLRLAAAHNP-QYNELLEQLEN 555 (572)
Q Consensus 522 ~l~~~g~~---eeA~~~l~~aL~l~P-~~~~~l~~l~~ 555 (572)
.-++.|.. ..=.+.|+..++.+| .+.+.++.+.+
T Consensus 253 lt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~ 290 (336)
T 3lpz_A 253 LSVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAE 290 (336)
T ss_dssp HHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 44455643 344567777888898 88888887765
No 271
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=44.58 E-value=23 Score=27.87 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=17.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 008246 411 QTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 411 ~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
.-.-..|++++|+.+|.+|++.
T Consensus 19 ve~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 19 VKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHH
Confidence 3346889999999999999974
No 272
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=43.70 E-value=35 Score=26.20 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHhhCCCCHH
Q 008246 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNIN 404 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~ 404 (572)
+.+|..+..+|++++|..+|-+|+...|+=.+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 45566666666666666666666666665443
No 273
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=42.83 E-value=34 Score=27.49 Aligned_cols=30 Identities=20% Similarity=0.110 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 403 INALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 403 ~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
+-.+-..+..+...|+||+|+++.++|...
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 344456777788899999999999888864
No 274
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=40.93 E-value=4e+02 Score=31.84 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=29.0
Q ss_pred HHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 008246 379 FLSKGDKERPIPLLQLALNKEPDNINALILMGQTQL 414 (572)
Q Consensus 379 ~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~ 414 (572)
.+.+-+.+++.++|++.++..|++-.++..+-+.+.
T Consensus 1117 ~~~k~~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~ 1152 (1354)
T 3lxu_X 1117 QIVKCELEMAEKIYNDVVAAHPKHLQANLLLIQNIE 1152 (1354)
T ss_dssp HHTTSCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHhhcChHHHHHHHHHHHHHCCccHHHHHHHHHhhh
Confidence 445555677999999999999999999987766554
No 275
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=40.00 E-value=32 Score=27.19 Aligned_cols=22 Identities=9% Similarity=-0.043 Sum_probs=17.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 008246 411 QTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 411 ~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
.-.-..|++++|+.+|..|++.
T Consensus 24 ve~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 24 VELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 3347889999999999999874
No 276
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=39.99 E-value=11 Score=29.87 Aligned_cols=31 Identities=10% Similarity=0.135 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHHHHHh
Q 008246 367 LTPKELIALSVKFLSKGDKERPIPLLQLALN 397 (572)
Q Consensus 367 ~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~ 397 (572)
..+..+...|...-..|++++|+.+|..|++
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455667778888888888888888877765
No 277
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=37.96 E-value=27 Score=27.48 Aligned_cols=21 Identities=33% Similarity=0.309 Sum_probs=16.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhh
Q 008246 413 QLQKGLLEEAVEYLECAISKL 433 (572)
Q Consensus 413 ~~~~g~~~eA~~~~~rAl~~l 433 (572)
.-..|++++|+.+|.+|++.+
T Consensus 29 ~D~~g~y~eAl~lY~~aie~l 49 (83)
T 2w2u_A 29 ADKEGNAEEAITNYKKAIEVL 49 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHH
Confidence 367788888888888888754
No 278
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=37.28 E-value=35 Score=27.63 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHhhCCC
Q 008246 373 IALSVKFLSKGDKERPIPLLQLALNKEPD 401 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL~~dP~ 401 (572)
+.+|..+...|++++|+.+|-+|+...|+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 46677777778877777777777766654
No 279
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=36.37 E-value=29 Score=27.19 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHH
Q 008246 372 LIALSVKFLSKGDKERPIPLLQLAL 396 (572)
Q Consensus 372 ~~~lA~~~~~~g~~~~A~~~l~~AL 396 (572)
++..|...-..|++++|+.+|++++
T Consensus 14 lv~~Ave~D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 14 YAILAVKADKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444444445555555555544443
No 280
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=36.20 E-value=34 Score=27.53 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=20.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 517 VVLASALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 517 ~~Lg~~l~~~g~~eeA~~~l~~aL~ 541 (572)
--.+..+...|+||||+++.+++..
T Consensus 19 ~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3578888999999999887777653
No 281
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.85 E-value=1.5e+02 Score=26.28 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=38.7
Q ss_pred cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHH-HHHH--HHHcCCHHHHHHHHHHHHHh
Q 008246 486 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVV-LASA--LCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 486 ~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~-Lg~~--l~~~g~~eeA~~~l~~aL~l 542 (572)
+|=+|-+.++.+-.- . ..+.....++.+++. +|.+ +.+.|+...|...+++++..
T Consensus 47 ~yfeaHEvLEe~W~~-~-~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 47 EFHESHDCFEDEWYN-Y-GRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp CHHHHHHHHHHHTTT-T-CSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHh-c-CCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999988872 1 122123445566666 5544 45579999999999999873
No 282
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=34.89 E-value=29 Score=27.06 Aligned_cols=26 Identities=12% Similarity=0.256 Sum_probs=16.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008246 408 LMGQTQLQKGLLEEAVEYLECAISKL 433 (572)
Q Consensus 408 ~LG~l~~~~g~~~eA~~~~~rAl~~l 433 (572)
.+|+=|...|+||.|+.+|+.+++.+
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~qI 42 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLDQM 42 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 45666666677777777776666543
No 283
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=34.20 E-value=62 Score=26.00 Aligned_cols=59 Identities=15% Similarity=0.060 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHhhCCCCH----HHHH--HHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008246 373 IALSVKFLSKGDKERPIPLLQLALNKEPDNI----NALI--LMGQTQLQKGLLEEAVEYLECAISKL 433 (572)
Q Consensus 373 ~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~----~a~~--~LG~l~~~~g~~~eA~~~~~rAl~~l 433 (572)
+..|..+++.|+|=+|-+.++.+-...|+.. ..+. .-|..+.+.|+. |...+++|+..+
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L 69 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARL 69 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHH
Confidence 5678888999999999999999999986531 1222 223445678888 999999999853
No 284
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=39.19 E-value=9.1 Score=42.48 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINALILMGQTQLQKGLLEEAV 423 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a~~~LG~l~~~~g~~~eA~ 423 (572)
.+..+..|..++.+|++.-|.++++.++..||+|.+|...++.+|.+.|.-.+..
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~~ 515 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTENA 515 (668)
Confidence 4566788888999999999999999999999999999999999999998766553
No 285
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=31.50 E-value=32 Score=21.26 Aligned_cols=17 Identities=29% Similarity=0.817 Sum_probs=12.5
Q ss_pred cCChHHHHHHHHHHHHHH
Q 008246 118 TGFPWWTIIVSSTVALRI 135 (572)
Q Consensus 118 ~glpW~~aIil~ti~vRl 135 (572)
.| .||++|++.-++.-+
T Consensus 5 LG-~~wlai~c~LLfs~L 21 (30)
T 1z65_A 5 LG-TWWVAILCMLLASHL 21 (30)
T ss_dssp CS-SHHHHHHHHHHHHHT
T ss_pred hh-hhHHHHHHHHHHhhH
Confidence 46 799999987766543
No 286
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=31.18 E-value=59 Score=29.98 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCHHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKEPDNINA 405 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~~a 405 (572)
...++.+|..+..++++.+|.+.+.+|++..|.+...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~ 50 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQK 50 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHH
Confidence 3467889999999999999999999999998876533
No 287
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=30.63 E-value=44 Score=26.00 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHh
Q 008246 370 KELIALSVKFLSKGDKERPIPLLQLALN 397 (572)
Q Consensus 370 ~~~~~lA~~~~~~g~~~~A~~~l~~AL~ 397 (572)
-..+.+|..+...|+|+.|+.+|+.+++
T Consensus 13 ~e~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 13 VENVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4567889999999999999999987653
No 288
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=27.74 E-value=49 Score=25.82 Aligned_cols=20 Identities=15% Similarity=-0.085 Sum_probs=15.0
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q 008246 413 QLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 413 ~~~~g~~~eA~~~~~rAl~~ 432 (572)
.-..|++++|+.+|..|++.
T Consensus 23 ~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 23 LDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 35668888888888888774
No 289
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=27.55 E-value=4.6e+02 Score=25.94 Aligned_cols=33 Identities=12% Similarity=-0.132 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008246 515 GLVVLASALCNVGRNAEAEKYLRLAAAHNPQYN 547 (572)
Q Consensus 515 al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~~ 547 (572)
++..--...++.++|.-|..+.++.|+++|.-.
T Consensus 209 aLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 209 ALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 333334456678999999999999999999644
No 290
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=27.07 E-value=3.2e+02 Score=31.41 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 371 ELIALSVKFLSKGDKERPIPLLQLALNKEPDNI--NALILMGQTQLQKGLLEEAVEYLECAIS 431 (572)
Q Consensus 371 ~~~~lA~~~~~~g~~~~A~~~l~~AL~~dP~~~--~a~~~LG~l~~~~g~~~eA~~~~~rAl~ 431 (572)
+.+.+|..+...++ +++...+...+..+.... .+-+.+|.++...|+-+.....++.+.+
T Consensus 457 AaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e 518 (963)
T 4ady_A 457 ASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE 518 (963)
T ss_dssp HHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc
Confidence 33455555554443 567888888887554322 4556788889999998877777766664
No 291
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=26.88 E-value=71 Score=24.99 Aligned_cols=32 Identities=16% Similarity=-0.089 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008246 487 WEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 487 ~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~ 541 (572)
.++|++...+|++. -+.|++++|..+|.++++
T Consensus 16 ~~~Ai~lv~~Ave~-----------------------D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 16 EEMARKYAINAVKA-----------------------DKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHH-----------------------HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----------------------HHhccHHHHHHHHHHHHH
Confidence 46777877777762 245677777766666655
No 292
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=26.69 E-value=4.7e+02 Score=25.80 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008246 515 GLVVLASALCNVGRNAEAEKYLRLAAAHNPQY 546 (572)
Q Consensus 515 al~~Lg~~l~~~g~~eeA~~~l~~aL~l~P~~ 546 (572)
++..--...++.++|.-|..+.++.|++.|+-
T Consensus 200 aLr~AM~~a~K~KNy~tAa~fArrLLel~p~~ 231 (320)
T 3mkr_B 200 VLRTALNLFFKLKNFRTAAAFARRLLELGPKP 231 (320)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence 33333445667899999999999999999863
No 293
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=26.60 E-value=52 Score=26.31 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=13.2
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 008246 414 LQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 414 ~~~g~~~eA~~~~~rAl~~ 432 (572)
-..|++++|+.+|..|++.
T Consensus 26 D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 26 DAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHH
Confidence 5567777777777777764
No 294
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=25.73 E-value=1.9e+02 Score=26.37 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 403 INALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 403 ~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
..-+|.+|.++..+++|.+|.+++.+|.+.
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 43 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEH 43 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 456789999999999999999999999985
No 295
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=25.58 E-value=2.4e+02 Score=28.56 Aligned_cols=64 Identities=16% Similarity=0.040 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhc--CCcccHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 369 PKELIALSVKFLSK--GDKERPIPLLQLALNK-----EPDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 369 ~~~~~~lA~~~~~~--g~~~~A~~~l~~AL~~-----dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
|.++-++|..--.. .....++.+|.+|+.. +-.+..-+..+|..+++.+++.||+.++-.|...
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 55667777665443 3334589999999885 3456778888999999999999999999998775
No 296
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=25.05 E-value=1.9e+02 Score=29.28 Aligned_cols=69 Identities=22% Similarity=0.119 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhhcCCCCChhhhhHHHHHHHHHHHHHHHhhchhhHHHHHhhhhhH
Q 008246 401 DNINALILMGQTQLQKG--LLEEAVEYLECAISKLFLAGHPTEPEAIDLLIVASQWSGVACIRQAAHNFFELVQQGQLKL 478 (572)
Q Consensus 401 ~~~~a~~~LG~l~~~~g--~~~eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~a~~~lG~~~~~~g~~~~~~a~~~~~~~~ 478 (572)
..+.|+.+||.+-...- ....++..|.+|+... ... ..+.....|..+|-.+++.+
T Consensus 253 rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa--~~y-----Y~n~HvYPYtylgGy~yR~~--------------- 310 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPTPGRPPAEELFKEAITVA--KRE-----YSDHHIYPYTYLGGYYYRKK--------------- 310 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHH--HHH-----STTCCSHHHHHHHHHHHHTT---------------
T ss_pred hCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHH--HHH-----hccCCccchhhhhhhhhhcc---------------
Confidence 45667777776644322 2233778888888631 000 00111124566777788888
Q ss_pred hhhhhhccHHHHHHHHHHHh
Q 008246 479 LSFVSQEKWEEGIAHLERIG 498 (572)
Q Consensus 479 ~~~~~~g~~~eAi~~l~kal 498 (572)
++.||++.+-.+.
T Consensus 311 -------~~reAl~~WA~Aa 323 (472)
T 3re2_A 311 -------KYYEAIASWVDAG 323 (472)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHH
Confidence 7777777665554
No 297
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.73 E-value=5.4e+02 Score=25.83 Aligned_cols=54 Identities=15% Similarity=0.014 Sum_probs=39.1
Q ss_pred HHhcCCcccHHHHHHHHHhhC-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 379 FLSKGDKERPIPLLQLALNKE-----------------PDNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 379 ~~~~g~~~~A~~~l~~AL~~d-----------------P~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
..+..+.++|.+.+++..+.- -....+....+..|...|+.++|..+++++-..
T Consensus 86 ~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~ 156 (393)
T 4b4t_O 86 LKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKT 156 (393)
T ss_dssp HHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 345567788888887653321 112355667889999999999999999999764
No 298
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=23.71 E-value=53 Score=27.57 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=14.7
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 008246 414 LQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 414 ~~~g~~~eA~~~~~rAl~~ 432 (572)
-..|++++|+.+|..|++.
T Consensus 29 D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 29 DKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 5568888888888888775
No 299
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=23.26 E-value=1.5e+02 Score=30.93 Aligned_cols=59 Identities=14% Similarity=0.101 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHhhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 374 ALSVKFLSKGDKERPIPLLQLALNKEP----------DNINALILMGQTQLQKGLLEEAVEYLECAISK 432 (572)
Q Consensus 374 ~lA~~~~~~g~~~~A~~~l~~AL~~dP----------~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~ 432 (572)
.+-..|.+.|+..-+...++..-...+ +-..-+|.+|.++..+++|.+|.+++..|.+.
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 444678899999999888875544332 22567889999999999999999999999974
No 300
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.51 E-value=2e+02 Score=33.12 Aligned_cols=66 Identities=9% Similarity=0.101 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHHHHHh-hC--------------------CCC--HHHHHHHHHHHHHcCCHHHHH
Q 008246 367 LTPKELIALSVKFLSKGDKERPIPLLQLALN-KE--------------------PDN--INALILMGQTQLQKGLLEEAV 423 (572)
Q Consensus 367 ~~~~~~~~lA~~~~~~g~~~~A~~~l~~AL~-~d--------------------P~~--~~a~~~LG~l~~~~g~~~eA~ 423 (572)
.++-.-|.+|..++..|++++|..+|++|-. +. ++. ..-|.....++.+.|-++.++
T Consensus 838 ~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi 917 (950)
T 4gq2_M 838 SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL 917 (950)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHH
Confidence 3556678999999999999999999997642 11 111 124456677788899999999
Q ss_pred HHHHHHHHh
Q 008246 424 EYLECAISK 432 (572)
Q Consensus 424 ~~~~rAl~~ 432 (572)
+..+.|++.
T Consensus 918 ~fA~lAI~~ 926 (950)
T 4gq2_M 918 EFSLLADAS 926 (950)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999999974
No 301
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=22.33 E-value=1.4e+02 Score=30.94 Aligned_cols=29 Identities=14% Similarity=-0.015 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 514 DGLVVLASALCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 514 ~al~~Lg~~l~~~g~~eeA~~~l~~aL~l 542 (572)
.+...+|.+|...|++++|.++.++++..
T Consensus 191 aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 191 AARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 46778999999999999999999999864
No 302
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=22.21 E-value=3.3e+02 Score=28.17 Aligned_cols=65 Identities=12% Similarity=0.158 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhc--CCcccHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 008246 369 PKELIALSVKFLSK--GDKERPIPLLQLALNK-----EPDNINALILMGQTQLQKGLLEEAVEYLECAISKL 433 (572)
Q Consensus 369 ~~~~~~lA~~~~~~--g~~~~A~~~l~~AL~~-----dP~~~~a~~~LG~l~~~~g~~~eA~~~~~rAl~~l 433 (572)
|.++.++|..--.. ...+.++.+|++|+.. +-.+..-|..+|..+.+.+++.+|..++..|...+
T Consensus 262 PmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi 333 (489)
T 4gq4_A 262 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVI 333 (489)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhh
Confidence 55666777665432 3345688899999884 34567778888999999999999999999998753
No 303
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=21.96 E-value=2.3e+02 Score=29.33 Aligned_cols=87 Identities=10% Similarity=-0.025 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhhhhcCCCCChhhhhHHHH----HHHHHHHHHHHhhchhhHHHHHhh
Q 008246 401 DNINALILMGQTQLQKGLLE--EAVEYLECAISKLFLAGHPTEPEAIDLLIV----ASQWSGVACIRQAAHNFFELVQQG 474 (572)
Q Consensus 401 ~~~~a~~~LG~l~~~~g~~~--eA~~~~~rAl~~l~~~~~P~~~~~~~~~~~----a~~~lG~~~~~~g~~~~~~a~~~~ 474 (572)
..+.|+.+||.+-...--.. .++..|.+|+.. ....+.. .|..+|-.+++.+
T Consensus 275 rYPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~s-----------a~~~Y~n~HvYPYtYlgGy~yR~~----------- 332 (550)
T 3u84_A 275 RYPMALGNLADLEELEPTPGRPDPLTLYHKGIAS-----------AKTYYRDEHIYPYMYLAGYHCRNR----------- 332 (550)
T ss_dssp TCHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHH-----------HHHHSTTCCSHHHHHHHHHHHHTT-----------
T ss_pred hCchhhcchhhHhhcCCCCCCCCHHHHHHHHHHH-----------HHHHhccCCccceeecchhhhhcc-----------
Q ss_pred hhhHhhhhhhccHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008246 475 QLKLLSFVSQEKWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASALCNVGRNAEAEKYLRLAAAH 542 (572)
Q Consensus 475 ~~~~~~~~~~g~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~l~~~g~~eeA~~~l~~aL~l 542 (572)
++.||+..+-.+ +.+...-+-..|-++.|++.+++
T Consensus 333 -----------~~reAl~~WA~A----------------------a~Vi~~YNY~reDeEIYKEf~eI 367 (550)
T 3u84_A 333 -----------NVREALQAWADT----------------------ATVIQDYNYCREDEEIYKEFFEV 367 (550)
T ss_dssp -----------CHHHHHHHHHHH----------------------HHHHTTSCCCGGGHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHH----------------------HHHHHHcCCCcchHHHHHHHHHH
No 304
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=21.79 E-value=5.3e+02 Score=24.62 Aligned_cols=45 Identities=2% Similarity=-0.007 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHhhC---CC-CHHHHHHHHHHH
Q 008246 369 PKELIALSVKFLSKGDKERPIPLLQLALNKE---PD-NINALILMGQTQ 413 (572)
Q Consensus 369 ~~~~~~lA~~~~~~g~~~~A~~~l~~AL~~d---P~-~~~a~~~LG~l~ 413 (572)
-+.++.+|....+.++|++...+.++..+.+ ++ +.+=...|..+|
T Consensus 28 re~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAy 76 (260)
T 2npm_A 28 RESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAY 76 (260)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHH
Confidence 4677889999999999999999999999987 43 344555555554
No 305
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=21.77 E-value=1.7e+02 Score=30.54 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008246 514 DGLVVLASALCNVGRNAEAEKYLRLAAAHN 543 (572)
Q Consensus 514 ~al~~Lg~~l~~~g~~eeA~~~l~~aL~l~ 543 (572)
-++..+|.+|...|++++|.++.++++...
T Consensus 203 aa~allarvyL~~~~~~~A~~~a~~vi~~~ 232 (477)
T 3mcx_A 203 AAQALLSRVYLNMGEYQKAYDAATDVIKNN 232 (477)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence 467789999999999999999999999754
No 306
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=21.31 E-value=2.3e+02 Score=22.57 Aligned_cols=50 Identities=26% Similarity=0.295 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHhcCCCCCCCchhhhhhHHHHHHHHH--HHHcCCHHHHHHHHHHHHH
Q 008246 486 KWEEGIAHLERIGNLKEPEEPKSKAHYYDGLVVLASA--LCNVGRNAEAEKYLRLAAA 541 (572)
Q Consensus 486 ~~~eAi~~l~kal~l~~p~dp~~~~~~~~al~~Lg~~--l~~~g~~eeA~~~l~~aL~ 541 (572)
+|=+|-+.++.+-. ..++....++.+++.++.. +...|+. |...+++++.
T Consensus 16 ~~~eaHEvlE~~W~----~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 16 RYYEVHEVLEPYWL----KATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp CHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh----hCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 88888888888877 2343334455666655554 4456887 9999999877
Done!