Query 008249
Match_columns 572
No_of_seqs 793 out of 3246
Neff 11.0
Searched_HMMs 46136
Date Thu Mar 28 21:24:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.8E-68 6.2E-73 566.3 64.9 517 47-571 368-910 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.2E-66 4.7E-71 552.0 64.0 477 85-568 372-874 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.5E-63 3.2E-68 528.3 51.4 453 99-571 104-558 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 8.3E-64 1.8E-68 542.8 49.9 435 113-567 182-651 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 2.9E-63 6.2E-68 538.5 52.1 466 83-569 120-617 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1.8E-60 3.9E-65 504.8 49.7 440 114-571 83-524 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.6E-29 5.6E-34 279.0 61.6 438 115-569 462-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.7E-28 3.7E-33 272.5 59.8 435 120-571 433-867 (899)
9 PRK11447 cellulose synthase su 99.9 7.6E-21 1.7E-25 212.2 59.7 186 374-569 469-699 (1157)
10 KOG4626 O-linked N-acetylgluco 99.9 9.7E-23 2.1E-27 193.3 36.2 428 119-567 83-516 (966)
11 PRK11447 cellulose synthase su 99.9 3.4E-21 7.4E-26 215.0 54.1 429 125-569 276-739 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 1.1E-21 2.4E-26 186.3 35.0 381 117-517 115-501 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 8.7E-20 1.9E-24 191.4 52.8 428 120-569 129-570 (615)
14 PRK11788 tetratricopeptide rep 99.9 3.8E-21 8.3E-26 191.6 37.1 308 197-542 44-354 (389)
15 PRK11788 tetratricopeptide rep 99.9 4.6E-21 1E-25 191.0 35.7 303 156-468 38-350 (389)
16 PRK15174 Vi polysaccharide exp 99.9 4.3E-19 9.2E-24 185.5 46.6 383 127-535 14-403 (656)
17 PRK15174 Vi polysaccharide exp 99.9 1.9E-18 4.2E-23 180.6 50.9 358 96-465 19-381 (656)
18 PRK10049 pgaA outer membrane p 99.9 5.8E-19 1.3E-23 188.5 47.8 416 116-547 13-466 (765)
19 PRK10049 pgaA outer membrane p 99.9 8.6E-18 1.9E-22 179.6 52.7 407 150-571 12-457 (765)
20 PRK14574 hmsH outer membrane p 99.9 1.6E-16 3.5E-21 166.5 56.4 433 124-571 40-514 (822)
21 PRK09782 bacteriophage N4 rece 99.9 4.3E-16 9.2E-21 166.8 58.3 436 116-571 179-707 (987)
22 PRK09782 bacteriophage N4 rece 99.9 2.9E-16 6.3E-21 168.1 56.0 425 117-571 77-673 (987)
23 TIGR00990 3a0801s09 mitochondr 99.9 4.9E-17 1.1E-21 170.7 49.3 405 113-535 155-571 (615)
24 KOG2002 TPR-containing nuclear 99.9 3.4E-17 7.4E-22 164.1 42.6 445 115-570 267-745 (1018)
25 PRK14574 hmsH outer membrane p 99.8 4.6E-15 9.9E-20 155.7 52.9 412 123-547 73-523 (822)
26 KOG4422 Uncharacterized conser 99.8 7.7E-15 1.7E-19 134.4 44.5 411 117-537 115-592 (625)
27 KOG2002 TPR-containing nuclear 99.8 2.7E-15 5.9E-20 150.7 44.5 441 118-569 307-797 (1018)
28 KOG4422 Uncharacterized conser 99.8 2.5E-14 5.5E-19 131.0 37.8 366 114-501 203-591 (625)
29 KOG0495 HAT repeat protein [RN 99.7 4E-12 8.6E-17 122.8 50.1 438 114-569 436-879 (913)
30 KOG1915 Cell cycle control pro 99.7 2.3E-12 5.1E-17 119.8 45.5 440 117-571 72-537 (677)
31 KOG0495 HAT repeat protein [RN 99.7 1.7E-12 3.6E-17 125.4 46.1 438 115-572 377-848 (913)
32 KOG2076 RNA polymerase III tra 99.7 2.2E-12 4.7E-17 129.4 46.6 341 115-463 136-510 (895)
33 KOG2003 TPR repeat-containing 99.7 6.9E-14 1.5E-18 129.0 32.8 208 342-556 501-709 (840)
34 KOG2003 TPR repeat-containing 99.7 4.2E-14 9.1E-19 130.4 29.0 382 128-521 247-709 (840)
35 KOG2076 RNA polymerase III tra 99.7 2.8E-12 6E-17 128.6 41.9 394 158-569 144-554 (895)
36 KOG1915 Cell cycle control pro 99.7 4.5E-11 9.7E-16 111.5 46.1 438 115-568 104-583 (677)
37 TIGR00540 hemY_coli hemY prote 99.7 3.9E-13 8.5E-18 133.5 34.9 289 272-569 95-398 (409)
38 PRK10747 putative protoheme IX 99.7 6.9E-13 1.5E-17 131.0 35.9 283 274-569 97-389 (398)
39 KOG0547 Translocase of outer m 99.7 4.8E-12 1E-16 118.3 36.3 418 121-569 118-565 (606)
40 KOG1155 Anaphase-promoting com 99.6 4.5E-11 9.7E-16 111.3 41.7 366 185-568 161-534 (559)
41 PRK10747 putative protoheme IX 99.6 1.9E-12 4E-17 128.0 35.0 282 166-462 97-387 (398)
42 TIGR00540 hemY_coli hemY prote 99.6 2.9E-12 6.3E-17 127.3 34.9 119 166-291 97-217 (409)
43 PF13429 TPR_15: Tetratricopep 99.6 2.8E-15 6E-20 141.5 12.7 261 301-569 13-276 (280)
44 PF13429 TPR_15: Tetratricopep 99.6 3.7E-15 8.1E-20 140.7 13.0 262 123-393 13-275 (280)
45 KOG1155 Anaphase-promoting com 99.6 7.7E-11 1.7E-15 109.8 39.4 382 150-553 161-552 (559)
46 COG2956 Predicted N-acetylgluc 99.6 3.9E-12 8.4E-17 112.9 29.5 302 83-395 36-347 (389)
47 COG2956 Predicted N-acetylgluc 99.6 9.6E-12 2.1E-16 110.5 31.2 291 201-498 48-345 (389)
48 KOG1126 DNA-binding cell divis 99.6 9.8E-13 2.1E-17 127.8 26.1 285 276-571 334-621 (638)
49 COG3071 HemY Uncharacterized e 99.6 3.5E-11 7.5E-16 110.3 33.7 285 274-568 97-388 (400)
50 COG3071 HemY Uncharacterized e 99.6 5.5E-11 1.2E-15 109.1 33.4 292 166-498 97-388 (400)
51 KOG1173 Anaphase-promoting com 99.5 5.7E-10 1.2E-14 106.7 40.1 264 300-569 248-517 (611)
52 KOG1126 DNA-binding cell divis 99.5 5.7E-12 1.2E-16 122.6 26.3 285 168-468 334-623 (638)
53 KOG4318 Bicoid mRNA stability 99.5 1.6E-11 3.5E-16 122.6 28.0 428 113-568 20-592 (1088)
54 KOG2047 mRNA splicing factor [ 99.5 1.3E-08 2.9E-13 98.8 45.3 435 119-567 103-612 (835)
55 KOG1173 Anaphase-promoting com 99.5 7.6E-10 1.6E-14 105.9 35.9 454 75-551 41-532 (611)
56 KOG1156 N-terminal acetyltrans 99.5 2.3E-08 4.9E-13 97.5 44.5 449 95-567 24-508 (700)
57 KOG0547 Translocase of outer m 99.5 7.3E-10 1.6E-14 104.0 32.8 191 377-572 337-534 (606)
58 KOG1156 N-terminal acetyltrans 99.5 1.7E-08 3.6E-13 98.4 42.5 430 121-568 11-466 (700)
59 KOG1174 Anaphase-promoting com 99.4 8.2E-08 1.8E-12 88.6 43.1 290 273-572 208-502 (564)
60 TIGR02521 type_IV_pilW type IV 99.4 1.6E-10 3.4E-15 106.2 26.6 201 117-324 30-231 (234)
61 TIGR02521 type_IV_pilW type IV 99.4 2.4E-10 5.2E-15 105.0 27.4 201 366-570 31-232 (234)
62 PRK12370 invasion protein regu 99.4 3.2E-10 6.9E-15 117.2 31.0 266 186-465 254-535 (553)
63 KOG4162 Predicted calmodulin-b 99.4 4.2E-09 9E-14 104.6 36.5 436 114-570 319-783 (799)
64 PRK12370 invasion protein regu 99.4 3.3E-10 7.2E-15 117.1 30.4 269 150-431 253-536 (553)
65 KOG2047 mRNA splicing factor [ 99.4 2.8E-07 6E-12 89.9 45.7 369 119-498 139-613 (835)
66 KOG1129 TPR repeat-containing 99.4 1.4E-10 2.9E-15 103.3 20.8 230 300-535 227-458 (478)
67 KOG3785 Uncharacterized conser 99.4 2E-08 4.3E-13 90.7 33.8 410 124-567 63-487 (557)
68 KOG4318 Bicoid mRNA stability 99.3 1.6E-09 3.4E-14 108.8 28.3 256 139-416 11-286 (1088)
69 PF12569 NARP1: NMDA receptor- 99.3 7E-09 1.5E-13 103.7 33.1 130 368-499 196-333 (517)
70 KOG1129 TPR repeat-containing 99.3 1.6E-10 3.5E-15 102.8 18.9 229 192-429 227-457 (478)
71 KOG2376 Signal recognition par 99.3 1.6E-07 3.5E-12 90.8 40.3 415 121-566 15-516 (652)
72 PF12569 NARP1: NMDA receptor- 99.3 1.5E-08 3.3E-13 101.2 35.2 130 403-534 196-333 (517)
73 KOG3785 Uncharacterized conser 99.3 3.1E-08 6.6E-13 89.5 30.1 389 115-535 88-490 (557)
74 PF13041 PPR_2: PPR repeat fam 99.3 1.3E-11 2.8E-16 81.7 6.6 49 469-517 1-49 (50)
75 PF13041 PPR_2: PPR repeat fam 99.3 1.1E-11 2.3E-16 82.1 6.0 50 116-165 1-50 (50)
76 COG3063 PilF Tfp pilus assembl 99.3 7.6E-09 1.7E-13 88.2 23.9 206 120-334 37-243 (250)
77 KOG1174 Anaphase-promoting com 99.3 4.7E-07 1E-11 83.8 37.1 306 219-535 190-500 (564)
78 KOG0548 Molecular co-chaperone 99.2 4.4E-08 9.6E-13 93.7 30.2 411 125-571 9-456 (539)
79 KOG1840 Kinesin light chain [C 99.2 4.9E-09 1.1E-13 103.4 24.2 241 152-393 198-477 (508)
80 KOG1840 Kinesin light chain [C 99.2 1.6E-08 3.4E-13 99.9 27.5 243 223-498 199-477 (508)
81 COG3063 PilF Tfp pilus assembl 99.2 2.6E-08 5.7E-13 85.0 24.7 199 156-360 38-236 (250)
82 KOG4340 Uncharacterized conser 99.2 1.4E-07 3.1E-12 83.3 28.7 353 119-498 11-373 (459)
83 PRK11189 lipoprotein NlpI; Pro 99.2 3.4E-08 7.4E-13 93.5 27.1 94 226-324 67-160 (296)
84 PRK11189 lipoprotein NlpI; Pro 99.2 4.6E-08 1E-12 92.6 27.3 122 131-254 39-163 (296)
85 cd05804 StaR_like StaR_like; a 99.2 4.1E-07 8.9E-12 89.5 35.1 199 370-569 118-335 (355)
86 KOG4162 Predicted calmodulin-b 99.2 7.5E-07 1.6E-11 89.0 35.6 432 82-535 321-783 (799)
87 cd05804 StaR_like StaR_like; a 99.1 6.8E-07 1.5E-11 87.9 35.7 198 337-535 120-336 (355)
88 KOG0548 Molecular co-chaperone 99.1 4.1E-07 8.9E-12 87.2 32.0 387 115-535 33-455 (539)
89 KOG4340 Uncharacterized conser 99.1 1.7E-07 3.7E-12 82.9 26.9 324 115-463 41-373 (459)
90 KOG2376 Signal recognition par 99.1 2.7E-06 5.9E-11 82.6 36.1 393 156-571 15-488 (652)
91 PRK04841 transcriptional regul 99.0 3.8E-06 8.2E-11 93.6 39.6 340 197-536 383-761 (903)
92 KOG3616 Selective LIM binding 99.0 1.1E-06 2.3E-11 87.0 29.6 216 305-563 715-930 (1636)
93 KOG1914 mRNA cleavage and poly 99.0 3.1E-05 6.8E-10 74.6 40.2 135 115-253 17-167 (656)
94 PRK04841 transcriptional regul 99.0 5.1E-06 1.1E-10 92.6 39.0 336 232-570 383-760 (903)
95 KOG1127 TPR repeat-containing 99.0 2.5E-06 5.4E-11 87.6 31.2 185 133-324 473-658 (1238)
96 KOG0985 Vesicle coat protein c 99.0 8.6E-05 1.9E-09 76.7 41.8 383 117-561 983-1374(1666)
97 KOG0624 dsRNA-activated protei 98.9 1.5E-05 3.4E-10 72.2 31.2 305 115-430 35-370 (504)
98 PF04733 Coatomer_E: Coatomer 98.9 9.7E-08 2.1E-12 89.0 18.0 24 300-323 135-158 (290)
99 KOG0624 dsRNA-activated protei 98.9 4.9E-05 1.1E-09 69.1 35.8 317 152-500 37-370 (504)
100 PF04733 Coatomer_E: Coatomer 98.9 1.4E-07 3E-12 88.0 18.0 257 268-542 8-270 (290)
101 KOG1125 TPR repeat-containing 98.9 5E-07 1.1E-11 87.4 21.6 88 233-325 295-382 (579)
102 KOG3616 Selective LIM binding 98.9 1.3E-05 2.8E-10 79.7 30.8 52 511-564 1000-1057(1636)
103 KOG3617 WD40 and TPR repeat-co 98.8 2.4E-05 5.2E-10 78.9 32.1 241 117-394 725-995 (1416)
104 KOG1127 TPR repeat-containing 98.8 3.2E-05 7E-10 79.7 32.7 165 119-289 493-658 (1238)
105 KOG1125 TPR repeat-containing 98.8 1.3E-06 2.7E-11 84.7 21.6 217 128-356 295-523 (579)
106 KOG0985 Vesicle coat protein c 98.8 0.00022 4.7E-09 73.9 37.3 204 295-533 1103-1306(1666)
107 KOG1070 rRNA processing protei 98.8 5.7E-06 1.2E-10 87.9 26.6 188 335-526 1501-1691(1710)
108 KOG1070 rRNA processing protei 98.8 7.5E-06 1.6E-10 87.0 27.0 231 259-493 1456-1693(1710)
109 PLN02789 farnesyltranstransfer 98.7 2.2E-05 4.7E-10 74.4 27.2 124 162-291 46-172 (320)
110 KOG3617 WD40 and TPR repeat-co 98.7 0.00014 3E-09 73.6 33.4 74 128-213 810-883 (1416)
111 TIGR03302 OM_YfiO outer membra 98.7 2.3E-06 5E-11 78.5 20.4 187 115-325 30-232 (235)
112 PLN02789 farnesyltranstransfer 98.7 2.4E-05 5.3E-10 74.1 27.2 214 120-342 39-266 (320)
113 PF12854 PPR_1: PPR repeat 98.7 2.2E-08 4.8E-13 59.3 3.8 32 113-144 2-33 (34)
114 PRK10370 formate-dependent nit 98.7 4E-06 8.8E-11 73.8 19.3 156 125-299 23-181 (198)
115 PF12854 PPR_1: PPR repeat 98.7 3.2E-08 7E-13 58.6 4.0 32 466-497 2-33 (34)
116 KOG1128 Uncharacterized conser 98.6 2.9E-06 6.4E-11 84.4 19.2 214 335-570 402-616 (777)
117 PRK10370 formate-dependent nit 98.6 6.8E-06 1.5E-10 72.4 19.8 156 373-544 23-181 (198)
118 TIGR03302 OM_YfiO outer membra 98.6 7.5E-06 1.6E-10 75.2 20.7 188 151-360 31-232 (235)
119 COG5010 TadD Flp pilus assembl 98.6 1.1E-05 2.4E-10 70.9 20.1 158 157-321 70-227 (257)
120 KOG1914 mRNA cleavage and poly 98.6 0.00071 1.5E-08 65.6 35.8 410 150-569 17-500 (656)
121 KOG1128 Uncharacterized conser 98.6 4.5E-06 9.8E-11 83.1 19.1 221 149-394 394-615 (777)
122 KOG2053 Mitochondrial inherita 98.6 0.0014 3E-08 67.5 49.0 453 86-568 16-534 (932)
123 PRK14720 transcript cleavage f 98.6 3.8E-05 8.3E-10 81.1 25.4 242 113-412 25-268 (906)
124 KOG3081 Vesicle coat complex C 98.5 0.00027 5.9E-09 62.3 25.9 249 270-535 17-271 (299)
125 COG5010 TadD Flp pilus assembl 98.5 1.3E-05 2.9E-10 70.4 17.8 164 117-288 66-229 (257)
126 PRK15179 Vi polysaccharide bio 98.5 2.4E-05 5.1E-10 81.8 22.5 136 115-253 83-218 (694)
127 PRK15179 Vi polysaccharide bio 98.5 7.6E-05 1.6E-09 78.1 26.2 146 363-512 83-228 (694)
128 PRK14720 transcript cleavage f 98.5 7.2E-05 1.6E-09 79.1 26.0 169 186-395 29-198 (906)
129 KOG3081 Vesicle coat complex C 98.5 0.00066 1.4E-08 59.9 26.5 222 84-325 10-236 (299)
130 PRK15359 type III secretion sy 98.5 1.8E-05 3.9E-10 65.9 16.7 93 159-253 30-122 (144)
131 COG4783 Putative Zn-dependent 98.4 0.00042 9.1E-09 66.6 26.2 112 307-422 317-429 (484)
132 PRK15359 type III secretion sy 98.4 2.9E-05 6.4E-10 64.6 16.7 95 191-290 27-121 (144)
133 COG4783 Putative Zn-dependent 98.4 0.00018 3.9E-09 69.0 22.8 183 115-325 271-454 (484)
134 TIGR02552 LcrH_SycD type III s 98.3 1.7E-05 3.7E-10 65.6 13.8 118 423-545 5-122 (135)
135 KOG3060 Uncharacterized conser 98.3 0.0008 1.7E-08 59.0 22.6 187 132-325 26-220 (289)
136 KOG3060 Uncharacterized conser 98.3 0.001 2.3E-08 58.3 23.1 187 202-395 26-220 (289)
137 TIGR02552 LcrH_SycD type III s 98.3 5.3E-05 1.1E-09 62.6 15.1 95 191-290 20-114 (135)
138 KOG2053 Mitochondrial inherita 98.2 0.011 2.3E-07 61.3 46.0 415 128-567 19-499 (932)
139 PF09976 TPR_21: Tetratricopep 98.2 0.0001 2.3E-09 61.6 15.8 128 438-568 14-145 (145)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00017 3.6E-09 69.9 17.4 121 159-288 175-295 (395)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00011 2.4E-09 71.0 16.2 126 189-323 170-295 (395)
142 PF09976 TPR_21: Tetratricopep 98.1 0.00031 6.7E-09 58.7 15.5 22 268-289 55-76 (145)
143 TIGR00756 PPR pentatricopeptid 98.1 7.1E-06 1.5E-10 49.3 4.1 33 120-152 2-34 (35)
144 TIGR00756 PPR pentatricopeptid 98.0 1.2E-05 2.6E-10 48.3 4.5 33 473-505 2-34 (35)
145 cd00189 TPR Tetratricopeptide 98.0 0.00015 3.3E-09 55.1 11.5 95 475-571 4-98 (100)
146 KOG2041 WD40 repeat protein [G 98.0 0.028 6.1E-07 56.6 29.8 206 150-391 689-903 (1189)
147 PF13812 PPR_3: Pentatricopept 97.9 1.4E-05 3E-10 47.6 4.0 33 119-151 2-34 (34)
148 PF13812 PPR_3: Pentatricopept 97.9 2.3E-05 5E-10 46.7 4.4 32 473-504 3-34 (34)
149 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00058 1.3E-08 54.8 13.9 97 193-290 7-105 (119)
150 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00043 9.2E-09 55.6 12.9 99 437-535 3-105 (119)
151 PRK10866 outer membrane biogen 97.9 0.0046 1E-07 56.4 20.7 82 117-199 31-115 (243)
152 PF10037 MRP-S27: Mitochondria 97.8 0.00037 7.9E-09 67.9 13.6 124 361-484 61-186 (429)
153 PF10037 MRP-S27: Mitochondria 97.8 0.0004 8.7E-09 67.6 13.5 125 219-344 62-186 (429)
154 PRK15363 pathogenicity island 97.8 0.00091 2E-08 55.0 13.1 95 439-535 38-132 (157)
155 cd00189 TPR Tetratricopeptide 97.8 0.00057 1.2E-08 51.9 11.5 89 194-287 6-94 (100)
156 KOG0550 Molecular chaperone (D 97.8 0.0063 1.4E-07 57.3 19.5 156 409-567 257-420 (486)
157 PRK15363 pathogenicity island 97.7 0.002 4.2E-08 53.0 14.4 94 156-251 38-131 (157)
158 PF12895 Apc3: Anaphase-promot 97.7 8.8E-05 1.9E-09 55.3 6.0 81 484-567 2-84 (84)
159 PF01535 PPR: PPR repeat; Int 97.7 4.7E-05 1E-09 44.2 3.4 29 120-148 2-30 (31)
160 PF08579 RPM2: Mitochondrial r 97.7 0.00064 1.4E-08 51.7 10.1 76 407-482 31-115 (120)
161 COG4700 Uncharacterized protei 97.7 0.019 4E-07 48.1 18.7 124 399-526 87-213 (251)
162 PF01535 PPR: PPR repeat; Int 97.7 5.7E-05 1.2E-09 43.8 3.2 28 473-500 2-29 (31)
163 PRK10866 outer membrane biogen 97.6 0.015 3.4E-07 53.0 20.3 56 372-427 181-238 (243)
164 PRK02603 photosystem I assembl 97.6 0.0038 8.2E-08 53.9 15.6 89 189-281 36-126 (172)
165 CHL00033 ycf3 photosystem I as 97.6 0.0016 3.5E-08 56.0 13.3 80 189-272 36-117 (168)
166 PLN03088 SGT1, suppressor of 97.6 0.0022 4.7E-08 62.5 15.5 88 410-499 11-98 (356)
167 PRK10153 DNA-binding transcrip 97.6 0.0047 1E-07 62.9 18.3 146 395-545 331-490 (517)
168 PF05843 Suf: Suppressor of fo 97.6 0.002 4.4E-08 60.3 14.4 145 402-551 2-150 (280)
169 PF08579 RPM2: Mitochondrial r 97.6 0.0016 3.5E-08 49.6 10.9 72 270-341 34-114 (120)
170 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.076 1.6E-06 50.9 37.4 138 113-253 37-191 (660)
171 PLN03088 SGT1, suppressor of 97.6 0.0023 5E-08 62.3 15.2 89 197-290 11-99 (356)
172 PF12895 Apc3: Anaphase-promot 97.6 0.0002 4.3E-09 53.4 5.9 15 197-211 34-48 (84)
173 PRK02603 photosystem I assembl 97.6 0.0057 1.2E-07 52.8 15.9 61 404-464 38-100 (172)
174 PF13414 TPR_11: TPR repeat; P 97.6 0.00041 9E-09 49.3 7.3 67 505-572 2-69 (69)
175 CHL00033 ycf3 photosystem I as 97.6 0.0021 4.6E-08 55.2 13.1 96 223-320 35-137 (168)
176 KOG0550 Molecular chaperone (D 97.6 0.08 1.7E-06 50.3 25.0 278 122-430 53-350 (486)
177 PF12688 TPR_5: Tetratrico pep 97.6 0.0054 1.2E-07 48.6 14.0 94 194-288 7-102 (120)
178 PF05843 Suf: Suppressor of fo 97.5 0.0019 4.2E-08 60.5 13.5 83 204-289 52-135 (280)
179 PF13525 YfiO: Outer membrane 97.5 0.011 2.4E-07 52.5 17.7 78 120-197 7-86 (203)
180 PF14938 SNAP: Soluble NSF att 97.5 0.021 4.6E-07 53.8 20.2 90 305-395 123-225 (282)
181 KOG2041 WD40 repeat protein [G 97.5 0.15 3.2E-06 51.7 27.2 203 115-356 689-903 (1189)
182 COG4700 Uncharacterized protei 97.5 0.04 8.6E-07 46.2 18.5 103 186-290 87-189 (251)
183 KOG0553 TPR repeat-containing 97.5 0.0018 4E-08 58.4 11.5 97 410-511 90-187 (304)
184 PRK10153 DNA-binding transcrip 97.5 0.01 2.3E-07 60.4 18.4 144 361-509 332-489 (517)
185 PF13432 TPR_16: Tetratricopep 97.4 0.00078 1.7E-08 47.2 6.9 55 479-534 5-59 (65)
186 PF06239 ECSIT: Evolutionarily 97.4 0.0028 6.2E-08 54.7 11.0 86 400-485 46-152 (228)
187 COG4235 Cytochrome c biogenesi 97.4 0.013 2.8E-07 53.4 15.6 109 177-291 146-257 (287)
188 KOG2796 Uncharacterized conser 97.3 0.012 2.7E-07 52.0 14.6 134 190-325 179-315 (366)
189 KOG0553 TPR repeat-containing 97.3 0.0037 8E-08 56.5 11.8 86 200-290 93-178 (304)
190 PF12688 TPR_5: Tetratrico pep 97.3 0.009 1.9E-07 47.4 12.6 91 442-534 7-103 (120)
191 PF06239 ECSIT: Evolutionarily 97.3 0.0036 7.8E-08 54.0 11.0 104 259-381 45-153 (228)
192 COG4105 ComL DNA uptake lipopr 97.3 0.12 2.6E-06 46.3 21.2 80 120-200 37-118 (254)
193 PF14938 SNAP: Soluble NSF att 97.3 0.033 7.2E-07 52.4 18.6 175 120-325 37-225 (282)
194 PF14559 TPR_19: Tetratricopep 97.3 0.0011 2.4E-08 46.9 6.6 63 482-547 2-64 (68)
195 PRK10803 tol-pal system protei 97.3 0.0055 1.2E-07 56.4 12.7 104 437-542 144-251 (263)
196 COG4235 Cytochrome c biogenesi 97.3 0.017 3.6E-07 52.7 15.2 116 417-535 138-256 (287)
197 PF14559 TPR_19: Tetratricopep 97.3 0.0011 2.4E-08 46.9 6.4 52 235-290 3-54 (68)
198 PF13525 YfiO: Outer membrane 97.3 0.048 1E-06 48.4 18.2 56 233-289 15-70 (203)
199 COG3898 Uncharacterized membra 97.2 0.19 4E-06 47.5 30.8 121 407-535 269-392 (531)
200 PF13432 TPR_16: Tetratricopep 97.2 0.0019 4.1E-08 45.2 7.4 56 231-290 5-60 (65)
201 KOG1130 Predicted G-alpha GTPa 97.2 0.0066 1.4E-07 57.1 12.5 284 126-427 25-341 (639)
202 KOG1130 Predicted G-alpha GTPa 97.1 0.011 2.5E-07 55.5 13.2 131 404-534 198-343 (639)
203 PF13414 TPR_11: TPR repeat; P 97.0 0.0037 8.1E-08 44.3 7.4 61 224-288 4-65 (69)
204 PRK10803 tol-pal system protei 97.0 0.019 4.2E-07 52.9 13.7 98 190-290 145-246 (263)
205 KOG2796 Uncharacterized conser 97.0 0.24 5.2E-06 44.2 19.1 132 225-360 179-315 (366)
206 PF03704 BTAD: Bacterial trans 96.9 0.028 6.1E-07 46.9 12.9 70 263-333 64-138 (146)
207 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.45 9.7E-06 45.9 34.1 419 136-569 27-530 (660)
208 PF07079 DUF1347: Protein of u 96.9 0.46 1E-05 45.9 41.9 393 121-546 80-530 (549)
209 PF13281 DUF4071: Domain of un 96.9 0.4 8.8E-06 46.1 21.5 93 124-216 147-254 (374)
210 PF13424 TPR_12: Tetratricopep 96.9 0.0034 7.4E-08 45.8 6.0 64 507-570 6-75 (78)
211 PRK15331 chaperone protein Sic 96.9 0.049 1.1E-06 45.2 13.1 88 446-535 47-134 (165)
212 KOG1538 Uncharacterized conser 96.8 0.39 8.6E-06 48.4 21.2 104 116-248 554-657 (1081)
213 PF13371 TPR_9: Tetratricopept 96.8 0.011 2.4E-07 42.4 8.1 56 479-535 3-58 (73)
214 PF13371 TPR_9: Tetratricopept 96.8 0.0064 1.4E-07 43.6 6.8 59 513-572 2-60 (73)
215 KOG2114 Vacuolar assembly/sort 96.7 1 2.2E-05 47.1 23.9 181 119-323 335-517 (933)
216 KOG1538 Uncharacterized conser 96.7 0.44 9.5E-06 48.0 20.1 195 314-531 618-829 (1081)
217 PF13281 DUF4071: Domain of un 96.6 0.5 1.1E-05 45.5 19.8 26 404-429 308-333 (374)
218 PF03704 BTAD: Bacterial trans 96.6 0.029 6.3E-07 46.8 10.4 71 473-544 64-139 (146)
219 PRK15331 chaperone protein Sic 96.4 0.1 2.3E-06 43.3 11.9 86 128-215 47-132 (165)
220 PF04840 Vps16_C: Vps16, C-ter 96.3 1.1 2.3E-05 42.8 30.5 109 403-531 179-287 (319)
221 PF04840 Vps16_C: Vps16, C-ter 96.3 1.1 2.4E-05 42.7 28.8 104 370-493 181-284 (319)
222 COG0457 NrfG FOG: TPR repeat [ 96.2 0.9 2E-05 40.8 30.6 223 310-535 37-265 (291)
223 KOG2280 Vacuolar assembly/sort 96.1 2.1 4.5E-05 44.4 32.1 347 146-530 425-794 (829)
224 PF13424 TPR_12: Tetratricopep 96.1 0.033 7.1E-07 40.5 7.1 26 262-287 47-72 (78)
225 COG3898 Uncharacterized membra 95.9 1.6 3.5E-05 41.5 33.0 120 373-500 270-392 (531)
226 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.045 9.8E-07 53.2 9.1 64 470-535 74-141 (453)
227 PF07079 DUF1347: Protein of u 95.9 1.8 4E-05 42.1 40.8 430 128-569 16-523 (549)
228 PF10300 DUF3808: Protein of u 95.9 0.59 1.3E-05 47.4 17.5 164 191-359 191-375 (468)
229 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.2 4.3E-06 48.9 13.1 66 115-182 72-141 (453)
230 PF12921 ATP13: Mitochondrial 95.8 0.27 5.9E-06 39.4 11.7 98 435-552 1-99 (126)
231 COG3118 Thioredoxin domain-con 95.8 0.8 1.7E-05 41.9 15.6 143 163-311 144-287 (304)
232 COG3118 Thioredoxin domain-con 95.8 1.6 3.4E-05 40.1 17.5 51 234-288 145-195 (304)
233 PF13512 TPR_18: Tetratricopep 95.7 0.26 5.7E-06 40.0 11.2 83 120-202 12-96 (142)
234 COG1729 Uncharacterized protei 95.7 0.21 4.5E-06 45.2 11.7 99 190-290 144-244 (262)
235 PF12921 ATP13: Mitochondrial 95.7 0.22 4.7E-06 40.0 10.6 99 400-518 1-100 (126)
236 smart00299 CLH Clathrin heavy 95.6 0.9 2E-05 37.4 14.9 126 121-272 10-136 (140)
237 KOG0543 FKBP-type peptidyl-pro 95.6 0.27 5.9E-06 46.9 12.7 61 226-290 260-320 (397)
238 KOG0543 FKBP-type peptidyl-pro 95.6 0.26 5.6E-06 47.0 12.5 140 406-569 213-354 (397)
239 KOG1258 mRNA processing protei 95.6 3 6.4E-05 42.2 34.5 410 116-555 43-489 (577)
240 COG1729 Uncharacterized protei 95.6 0.39 8.5E-06 43.5 13.0 99 155-254 144-246 (262)
241 PRK11906 transcriptional regul 95.6 0.99 2.1E-05 44.4 16.6 80 453-535 321-401 (458)
242 PF10300 DUF3808: Protein of u 95.5 1.3 2.9E-05 44.9 18.2 117 449-568 246-374 (468)
243 KOG4555 TPR repeat-containing 95.5 0.48 1E-05 37.4 11.4 53 163-216 53-105 (175)
244 KOG1920 IkappaB kinase complex 95.4 5.5 0.00012 43.8 27.0 141 369-533 911-1053(1265)
245 KOG2610 Uncharacterized conser 95.4 0.51 1.1E-05 43.7 12.9 153 164-322 114-273 (491)
246 KOG4555 TPR repeat-containing 95.3 0.72 1.6E-05 36.5 11.7 52 234-289 54-105 (175)
247 PF04053 Coatomer_WDAD: Coatom 95.2 0.33 7.2E-06 48.5 12.7 130 121-286 298-427 (443)
248 KOG1258 mRNA processing protei 95.2 4 8.6E-05 41.4 35.8 393 98-522 61-491 (577)
249 KOG3941 Intermediate in Toll s 95.2 0.15 3.3E-06 45.8 9.1 34 453-486 140-173 (406)
250 COG4105 ComL DNA uptake lipopr 95.2 2.2 4.9E-05 38.4 21.3 71 307-377 45-117 (254)
251 KOG2610 Uncharacterized conser 95.1 0.78 1.7E-05 42.6 13.4 157 199-357 114-273 (491)
252 KOG2280 Vacuolar assembly/sort 95.1 5 0.00011 41.7 33.6 110 435-563 683-792 (829)
253 PF04184 ST7: ST7 protein; In 95.1 2.5 5.3E-05 41.9 17.3 58 476-534 264-323 (539)
254 KOG3941 Intermediate in Toll s 95.0 0.18 3.9E-06 45.4 8.9 120 113-251 62-187 (406)
255 PRK11906 transcriptional regul 95.0 3 6.6E-05 41.1 17.7 146 169-321 274-432 (458)
256 PF04053 Coatomer_WDAD: Coatom 94.9 0.82 1.8E-05 45.7 14.4 56 365-429 346-401 (443)
257 smart00299 CLH Clathrin heavy 94.8 2 4.3E-05 35.4 15.3 42 371-413 12-53 (140)
258 PF04184 ST7: ST7 protein; In 94.7 3.4 7.3E-05 41.0 17.3 58 441-498 264-322 (539)
259 PF09205 DUF1955: Domain of un 94.7 1.7 3.7E-05 34.5 14.9 62 335-397 90-151 (161)
260 PF09205 DUF1955: Domain of un 94.6 1.8 4E-05 34.4 14.4 62 226-291 89-150 (161)
261 PF13512 TPR_18: Tetratricopep 94.6 1.5 3.3E-05 35.6 12.5 56 199-254 21-78 (142)
262 KOG1941 Acetylcholine receptor 94.6 1.2 2.7E-05 41.8 13.3 230 306-535 16-275 (518)
263 KOG1585 Protein required for f 94.3 3.7 8E-05 36.6 18.8 19 513-531 197-215 (308)
264 PF13428 TPR_14: Tetratricopep 94.3 0.16 3.5E-06 31.9 5.2 29 226-254 4-32 (44)
265 KOG1920 IkappaB kinase complex 94.3 10 0.00023 41.8 28.3 149 380-563 894-1048(1265)
266 KOG2114 Vacuolar assembly/sort 94.2 8.8 0.00019 40.6 24.3 148 120-288 370-517 (933)
267 PF13176 TPR_7: Tetratricopept 94.2 0.11 2.3E-06 31.0 4.0 26 543-568 1-26 (36)
268 KOG2396 HAT (Half-A-TPR) repea 94.0 7 0.00015 38.8 37.8 79 114-194 101-180 (568)
269 COG4649 Uncharacterized protei 93.9 3.4 7.5E-05 34.6 14.4 123 199-324 69-195 (221)
270 PF13428 TPR_14: Tetratricopep 93.7 0.23 5E-06 31.2 5.1 27 157-183 5-31 (44)
271 COG3629 DnrI DNA-binding trans 93.6 0.8 1.7E-05 42.2 10.3 78 154-232 154-236 (280)
272 PF08631 SPO22: Meiosis protei 93.6 6.4 0.00014 36.9 26.1 62 225-290 86-150 (278)
273 PF10602 RPN7: 26S proteasome 93.6 1.2 2.6E-05 38.3 10.9 96 472-567 37-139 (177)
274 PF08631 SPO22: Meiosis protei 93.5 6.5 0.00014 36.9 26.5 163 403-568 86-273 (278)
275 COG3629 DnrI DNA-binding trans 93.5 0.97 2.1E-05 41.6 10.6 76 474-550 156-236 (280)
276 PF00515 TPR_1: Tetratricopept 93.4 0.22 4.9E-06 29.0 4.5 30 543-572 3-32 (34)
277 KOG1941 Acetylcholine receptor 93.4 6.8 0.00015 37.1 15.7 229 271-499 16-274 (518)
278 PF10345 Cohesin_load: Cohesin 93.3 13 0.00028 39.5 45.9 191 378-569 373-605 (608)
279 PF13170 DUF4003: Protein of u 93.2 7.6 0.00016 36.6 20.7 132 204-337 78-223 (297)
280 COG4649 Uncharacterized protei 93.2 4.6 9.9E-05 34.0 15.7 136 117-253 58-197 (221)
281 PF07719 TPR_2: Tetratricopept 93.1 0.26 5.7E-06 28.6 4.5 30 543-572 3-32 (34)
282 KOG4570 Uncharacterized conser 93.0 1.5 3.2E-05 40.4 10.7 106 147-254 58-166 (418)
283 PF13170 DUF4003: Protein of u 92.8 8.8 0.00019 36.2 19.9 132 382-515 78-226 (297)
284 PF04097 Nic96: Nup93/Nic96; 92.7 11 0.00023 40.0 18.4 49 152-201 110-158 (613)
285 COG0457 NrfG FOG: TPR repeat [ 92.5 7.4 0.00016 34.6 33.1 222 275-499 37-264 (291)
286 COG4785 NlpI Lipoprotein NlpI, 92.2 7.5 0.00016 34.0 15.8 65 152-217 98-162 (297)
287 PF10602 RPN7: 26S proteasome 92.2 3.6 7.7E-05 35.5 11.9 97 262-358 37-140 (177)
288 PF13431 TPR_17: Tetratricopep 92.1 0.2 4.3E-06 29.4 2.8 32 246-281 2-33 (34)
289 PF09613 HrpB1_HrpK: Bacterial 91.9 6.7 0.00014 32.7 13.8 53 234-290 21-73 (160)
290 PF13176 TPR_7: Tetratricopept 91.9 0.42 9E-06 28.4 4.2 27 508-534 1-27 (36)
291 KOG1550 Extracellular protein 91.8 19 0.0004 37.7 26.4 245 239-500 228-504 (552)
292 PF02259 FAT: FAT domain; Int 91.7 14 0.0003 36.0 22.4 66 434-499 144-212 (352)
293 KOG4234 TPR repeat-containing 91.5 2.9 6.2E-05 36.0 9.9 90 444-535 103-197 (271)
294 PF09613 HrpB1_HrpK: Bacterial 90.9 8.5 0.00018 32.1 14.0 50 448-499 22-72 (160)
295 KOG1550 Extracellular protein 90.6 24 0.00052 36.9 26.0 180 169-361 228-427 (552)
296 PF11207 DUF2989: Protein of u 90.5 9.9 0.00021 33.1 12.5 75 205-280 123-197 (203)
297 PF07035 Mic1: Colon cancer-as 90.4 9.9 0.00022 32.1 14.5 22 147-168 23-44 (167)
298 PF13181 TPR_8: Tetratricopept 90.2 0.67 1.5E-05 26.9 4.0 29 543-571 3-31 (34)
299 KOG1585 Protein required for f 90.2 13 0.00029 33.2 18.1 205 226-459 34-250 (308)
300 KOG0276 Vesicle coat complex C 90.2 7 0.00015 39.7 12.8 98 234-355 648-745 (794)
301 PRK09687 putative lyase; Provi 90.1 17 0.00036 34.1 29.6 219 115-359 34-262 (280)
302 COG2976 Uncharacterized protei 89.7 12 0.00027 32.2 13.9 129 401-536 54-189 (207)
303 PRK15180 Vi polysaccharide bio 89.6 23 0.00049 35.1 28.5 126 125-254 296-422 (831)
304 PF13431 TPR_17: Tetratricopep 89.5 0.49 1.1E-05 27.7 2.9 19 542-560 14-32 (34)
305 PF07035 Mic1: Colon cancer-as 89.2 13 0.00027 31.5 15.6 47 177-227 18-64 (167)
306 KOG4570 Uncharacterized conser 89.0 6.7 0.00014 36.4 10.8 99 364-464 62-163 (418)
307 COG2909 MalT ATP-dependent tra 88.5 40 0.00086 36.4 27.4 225 307-531 426-684 (894)
308 COG1747 Uncharacterized N-term 88.4 29 0.00063 34.8 25.6 163 365-535 65-234 (711)
309 PF00515 TPR_1: Tetratricopept 88.3 1.5 3.3E-05 25.3 4.5 28 508-535 3-30 (34)
310 PF11207 DUF2989: Protein of u 88.2 5 0.00011 34.9 9.2 73 488-561 123-198 (203)
311 KOG0276 Vesicle coat complex C 88.2 10 0.00022 38.6 12.3 99 199-321 648-746 (794)
312 KOG0890 Protein kinase of the 88.1 70 0.0015 38.8 25.8 319 228-571 1388-1732(2382)
313 PF07719 TPR_2: Tetratricopept 88.1 1.6 3.4E-05 25.2 4.5 28 508-535 3-30 (34)
314 PF13374 TPR_10: Tetratricopep 87.6 1.4 3E-05 26.9 4.3 27 543-569 4-30 (42)
315 cd00923 Cyt_c_Oxidase_Va Cytoc 87.2 5 0.00011 30.0 7.3 42 492-533 28-69 (103)
316 COG4785 NlpI Lipoprotein NlpI, 86.9 21 0.00046 31.4 17.0 84 237-325 79-162 (297)
317 TIGR02561 HrpB1_HrpK type III 86.9 16 0.00035 30.0 12.3 51 236-290 23-73 (153)
318 KOG4648 Uncharacterized conser 86.5 2.3 5.1E-05 39.7 6.6 94 443-541 104-198 (536)
319 PF02259 FAT: FAT domain; Int 86.1 35 0.00075 33.2 25.6 65 365-429 145-212 (352)
320 PF13174 TPR_6: Tetratricopept 86.0 1.4 3.1E-05 25.1 3.5 25 546-570 5-29 (33)
321 PF02284 COX5A: Cytochrome c o 85.3 7.6 0.00016 29.4 7.5 41 494-534 33-73 (108)
322 COG2976 Uncharacterized protei 84.1 27 0.00059 30.2 14.5 94 230-326 96-189 (207)
323 cd00923 Cyt_c_Oxidase_Va Cytoc 84.1 10 0.00022 28.4 7.6 61 452-513 23-83 (103)
324 PF13374 TPR_10: Tetratricopep 84.0 2.9 6.2E-05 25.4 4.5 28 507-534 3-30 (42)
325 PRK11619 lytic murein transgly 83.9 65 0.0014 34.4 32.6 234 115-358 126-373 (644)
326 PF10345 Cohesin_load: Cohesin 83.3 67 0.0015 34.2 41.2 416 117-534 58-605 (608)
327 COG2909 MalT ATP-dependent tra 83.2 73 0.0016 34.5 27.5 227 341-567 425-685 (894)
328 KOG2066 Vacuolar assembly/sort 83.0 69 0.0015 34.1 29.5 102 125-235 363-467 (846)
329 KOG4648 Uncharacterized conser 82.7 7.5 0.00016 36.5 8.0 94 408-506 104-198 (536)
330 KOG4234 TPR repeat-containing 82.7 31 0.00068 30.0 11.0 21 163-183 105-125 (271)
331 PF13174 TPR_6: Tetratricopept 82.6 2.3 4.9E-05 24.2 3.3 25 511-535 5-29 (33)
332 COG3947 Response regulator con 82.2 42 0.00092 31.1 16.1 60 263-323 281-340 (361)
333 COG3947 Response regulator con 81.8 44 0.00095 31.0 16.5 71 473-544 281-356 (361)
334 COG4455 ImpE Protein of avirul 81.8 13 0.00029 32.6 8.7 55 195-250 8-62 (273)
335 PF00637 Clathrin: Region in C 81.5 0.54 1.2E-05 38.9 0.4 122 441-569 12-137 (143)
336 COG4455 ImpE Protein of avirul 81.3 11 0.00025 33.0 8.1 59 227-289 5-63 (273)
337 PF06552 TOM20_plant: Plant sp 80.8 17 0.00036 31.1 8.8 109 417-536 7-137 (186)
338 PF00637 Clathrin: Region in C 80.5 0.68 1.5E-05 38.3 0.7 85 123-214 12-96 (143)
339 PRK09687 putative lyase; Provi 79.6 55 0.0012 30.7 28.8 235 293-552 34-278 (280)
340 PF08424 NRDE-2: NRDE-2, neces 79.5 61 0.0013 31.2 18.1 115 454-570 49-183 (321)
341 KOG2396 HAT (Half-A-TPR) repea 79.3 74 0.0016 32.0 37.9 410 137-568 90-557 (568)
342 PF07721 TPR_4: Tetratricopept 78.5 3.5 7.7E-05 22.2 2.9 20 546-565 6-25 (26)
343 PF13181 TPR_8: Tetratricopept 77.8 7 0.00015 22.4 4.4 29 507-535 2-30 (34)
344 TIGR03504 FimV_Cterm FimV C-te 77.8 5.7 0.00012 24.9 4.0 24 512-535 5-28 (44)
345 PF07575 Nucleopor_Nup85: Nup8 77.8 98 0.0021 32.6 18.0 33 518-550 507-539 (566)
346 PF06552 TOM20_plant: Plant sp 77.7 23 0.0005 30.2 8.7 75 278-361 52-137 (186)
347 PF02284 COX5A: Cytochrome c o 77.3 29 0.00064 26.4 9.4 40 176-215 33-72 (108)
348 smart00028 TPR Tetratricopepti 77.3 4.5 9.8E-05 22.1 3.5 27 544-570 4-30 (34)
349 TIGR03504 FimV_Cterm FimV C-te 76.7 5 0.00011 25.1 3.5 25 546-570 4-28 (44)
350 KOG3364 Membrane protein invol 76.3 35 0.00077 27.5 8.8 66 469-535 30-100 (149)
351 PF13929 mRNA_stabil: mRNA sta 76.3 66 0.0014 29.9 17.6 115 276-390 143-262 (292)
352 PF09986 DUF2225: Uncharacteri 75.5 39 0.00085 30.1 10.3 24 512-535 171-194 (214)
353 PHA02875 ankyrin repeat protei 75.4 92 0.002 31.1 15.1 16 339-354 73-88 (413)
354 PF07163 Pex26: Pex26 protein; 75.1 46 0.00099 30.7 10.4 88 159-246 89-181 (309)
355 PF13929 mRNA_stabil: mRNA sta 75.0 72 0.0016 29.7 16.1 117 310-426 142-263 (292)
356 KOG2063 Vacuolar assembly/sort 74.7 1.4E+02 0.0031 32.9 17.1 39 375-413 600-638 (877)
357 PF07163 Pex26: Pex26 protein; 74.6 40 0.00086 31.1 9.9 91 121-211 86-181 (309)
358 PHA02875 ankyrin repeat protei 74.0 1E+02 0.0022 30.9 15.9 111 124-246 38-155 (413)
359 KOG0403 Neoplastic transformat 73.6 99 0.0021 30.6 17.6 333 157-516 218-626 (645)
360 KOG4507 Uncharacterized conser 73.2 8.1 0.00018 39.1 5.8 88 483-571 619-706 (886)
361 TIGR02561 HrpB1_HrpK type III 73.1 52 0.0011 27.2 12.6 49 273-325 22-73 (153)
362 KOG4507 Uncharacterized conser 72.6 27 0.00059 35.6 9.1 103 200-307 619-721 (886)
363 PF10579 Rapsyn_N: Rapsyn N-te 72.2 14 0.00031 26.5 5.3 44 449-492 19-64 (80)
364 PF00244 14-3-3: 14-3-3 protei 70.7 75 0.0016 28.9 11.2 48 522-569 142-197 (236)
365 PF04910 Tcf25: Transcriptiona 70.5 1.1E+02 0.0024 29.9 16.6 100 117-216 39-167 (360)
366 PF10579 Rapsyn_N: Rapsyn N-te 69.7 15 0.00033 26.4 4.9 17 236-252 19-35 (80)
367 PF08424 NRDE-2: NRDE-2, neces 69.6 1.1E+02 0.0024 29.4 17.6 63 205-272 48-110 (321)
368 COG1747 Uncharacterized N-term 69.2 1.4E+02 0.0029 30.4 25.3 180 151-339 64-247 (711)
369 TIGR02508 type_III_yscG type I 68.3 50 0.0011 25.1 8.6 51 162-218 48-98 (115)
370 PF08311 Mad3_BUB1_I: Mad3/BUB 68.0 42 0.00091 27.0 8.0 44 524-567 81-125 (126)
371 COG5159 RPN6 26S proteasome re 67.2 1.1E+02 0.0023 28.4 14.8 198 302-499 9-234 (421)
372 PF04097 Nic96: Nup93/Nic96; 66.9 1.8E+02 0.0039 31.0 24.3 67 116-184 110-183 (613)
373 KOG2063 Vacuolar assembly/sort 65.7 2.2E+02 0.0048 31.5 18.9 116 120-235 506-638 (877)
374 KOG4077 Cytochrome c oxidase, 65.5 52 0.0011 26.2 7.5 43 457-499 70-112 (149)
375 TIGR02508 type_III_yscG type I 65.1 59 0.0013 24.7 8.5 49 271-325 49-97 (115)
376 KOG0128 RNA-binding protein SA 63.9 2.2E+02 0.0047 30.8 36.3 98 152-252 112-219 (881)
377 KOG0890 Protein kinase of the 63.8 3.6E+02 0.0078 33.3 29.0 314 193-535 1388-1731(2382)
378 PF14689 SPOB_a: Sensor_kinase 63.8 21 0.00047 24.3 4.8 30 505-534 22-51 (62)
379 PF11846 DUF3366: Domain of un 63.1 36 0.00078 29.7 7.5 53 483-535 120-173 (193)
380 KOG1464 COP9 signalosome, subu 62.1 1.3E+02 0.0028 27.6 18.7 212 273-485 39-286 (440)
381 PRK11619 lytic murein transgly 61.8 2.3E+02 0.005 30.4 38.8 118 344-464 254-374 (644)
382 PF12862 Apc5: Anaphase-promot 61.6 51 0.0011 24.7 7.1 54 482-535 9-70 (94)
383 KOG2471 TPR repeat-containing 61.3 1.9E+02 0.0041 29.2 14.0 42 129-170 28-69 (696)
384 PF14853 Fis1_TPR_C: Fis1 C-te 61.0 23 0.00051 23.2 4.3 20 550-569 10-29 (53)
385 KOG4077 Cytochrome c oxidase, 60.5 66 0.0014 25.6 7.2 44 492-535 70-113 (149)
386 KOG4642 Chaperone-dependent E3 60.5 1.3E+02 0.0029 27.2 11.1 117 411-531 20-142 (284)
387 KOG2422 Uncharacterized conser 58.8 2.3E+02 0.0049 29.4 16.1 157 132-288 252-446 (665)
388 PF13762 MNE1: Mitochondrial s 57.5 1.1E+02 0.0024 25.3 11.3 80 157-236 43-128 (145)
389 PRK15180 Vi polysaccharide bio 56.9 2.2E+02 0.0048 28.6 27.8 119 166-291 302-421 (831)
390 PF14689 SPOB_a: Sensor_kinase 56.7 32 0.00069 23.5 4.7 22 546-567 28-49 (62)
391 KOG2034 Vacuolar sorting prote 56.3 3.1E+02 0.0066 30.1 29.4 172 124-321 364-555 (911)
392 KOG2908 26S proteasome regulat 55.3 2E+02 0.0043 27.6 10.9 83 442-524 81-175 (380)
393 KOG0687 26S proteasome regulat 55.0 1.9E+02 0.0042 27.4 16.1 15 379-393 194-208 (393)
394 PF11846 DUF3366: Domain of un 54.8 69 0.0015 28.0 7.8 53 448-500 120-173 (193)
395 PF11848 DUF3368: Domain of un 54.4 54 0.0012 20.9 5.1 30 518-547 14-43 (48)
396 PF11663 Toxin_YhaV: Toxin wit 54.0 15 0.00033 29.5 3.0 32 517-550 106-137 (140)
397 PF00244 14-3-3: 14-3-3 protei 53.9 1.6E+02 0.0035 26.8 10.1 48 487-534 142-197 (236)
398 PF09670 Cas_Cas02710: CRISPR- 53.8 1.3E+02 0.0028 29.8 10.2 57 125-182 138-198 (379)
399 PF11848 DUF3368: Domain of un 53.7 56 0.0012 20.9 5.1 33 482-514 13-45 (48)
400 COG0790 FOG: TPR repeat, SEL1 52.3 2.1E+02 0.0045 26.9 25.1 123 416-545 128-276 (292)
401 PF14853 Fis1_TPR_C: Fis1 C-te 51.9 66 0.0014 21.1 5.4 29 512-542 7-35 (53)
402 KOG2297 Predicted translation 51.9 2.1E+02 0.0046 26.9 16.2 20 471-490 321-340 (412)
403 COG0790 FOG: TPR repeat, SEL1 51.8 2.1E+02 0.0045 26.8 23.0 17 200-216 53-69 (292)
404 KOG2297 Predicted translation 51.5 2.1E+02 0.0046 26.9 19.6 161 151-352 163-342 (412)
405 PF07575 Nucleopor_Nup85: Nup8 51.3 3.2E+02 0.0069 28.8 17.3 26 117-143 148-173 (566)
406 KOG2659 LisH motif-containing 50.9 1.9E+02 0.004 26.0 9.7 99 466-566 21-128 (228)
407 PF12862 Apc5: Anaphase-promot 50.7 93 0.002 23.3 6.9 23 229-251 47-69 (94)
408 cd00280 TRFH Telomeric Repeat 50.6 1.1E+02 0.0023 26.4 7.5 48 169-216 85-139 (200)
409 PRK10564 maltose regulon perip 50.3 33 0.00071 32.0 5.0 35 474-508 260-294 (303)
410 PRK10941 hypothetical protein; 50.1 2.2E+02 0.0047 26.5 11.0 60 475-535 185-244 (269)
411 COG0735 Fur Fe2+/Zn2+ uptake r 50.1 1.1E+02 0.0023 25.3 7.7 57 143-200 11-67 (145)
412 KOG2422 Uncharacterized conser 49.3 3.2E+02 0.007 28.3 14.9 134 120-253 286-449 (665)
413 PF09670 Cas_Cas02710: CRISPR- 49.1 2.4E+02 0.0052 27.9 11.2 56 409-465 139-198 (379)
414 KOG2471 TPR repeat-containing 48.8 3.1E+02 0.0066 27.9 15.1 38 480-518 344-381 (696)
415 PF10366 Vps39_1: Vacuolar sor 48.0 1.3E+02 0.0028 23.4 7.8 26 156-181 42-67 (108)
416 KOG4521 Nuclear pore complex, 47.3 4.5E+02 0.0098 30.0 13.2 59 226-284 986-1044(1480)
417 PF04190 DUF410: Protein of un 47.2 2.4E+02 0.0051 26.1 17.6 25 222-246 89-113 (260)
418 KOG0686 COP9 signalosome, subu 47.1 2.9E+02 0.0064 27.2 14.6 30 310-339 318-352 (466)
419 KOG1308 Hsp70-interacting prot 46.5 26 0.00056 33.2 3.8 90 413-505 126-216 (377)
420 KOG4642 Chaperone-dependent E3 46.3 2.3E+02 0.005 25.7 11.1 55 229-287 50-104 (284)
421 COG5187 RPN7 26S proteasome re 44.7 2.7E+02 0.0058 26.0 14.4 99 259-359 113-220 (412)
422 smart00386 HAT HAT (Half-A-TPR 44.2 54 0.0012 17.9 3.9 14 238-251 2-15 (33)
423 PRK10564 maltose regulon perip 44.1 59 0.0013 30.4 5.7 45 502-546 252-297 (303)
424 KOG3636 Uncharacterized conser 43.7 3.4E+02 0.0074 27.0 15.0 88 464-552 176-271 (669)
425 COG4976 Predicted methyltransf 43.6 51 0.0011 29.4 4.9 55 480-535 4-58 (287)
426 PF04190 DUF410: Protein of un 43.5 2.7E+02 0.0059 25.8 18.2 26 259-284 88-113 (260)
427 COG5108 RPO41 Mitochondrial DN 43.4 1.6E+02 0.0034 31.0 8.8 75 123-200 33-115 (1117)
428 PRK10941 hypothetical protein; 43.0 2.8E+02 0.0061 25.8 11.2 59 194-253 187-245 (269)
429 PF14669 Asp_Glu_race_2: Putat 42.9 2.3E+02 0.0049 24.7 14.6 55 371-425 137-205 (233)
430 PF13762 MNE1: Mitochondrial s 42.8 1.9E+02 0.0042 23.9 10.5 45 438-482 81-126 (145)
431 COG0735 Fur Fe2+/Zn2+ uptake r 42.1 1.5E+02 0.0033 24.5 7.4 60 390-450 10-69 (145)
432 KOG3636 Uncharacterized conser 42.1 3.6E+02 0.0079 26.8 13.0 87 217-307 177-271 (669)
433 COG5108 RPO41 Mitochondrial DN 42.0 2.1E+02 0.0045 30.2 9.4 90 193-288 33-130 (1117)
434 PF04510 DUF577: Family of unk 41.4 1.9E+02 0.0042 24.6 7.7 29 3-37 7-37 (174)
435 cd08819 CARD_MDA5_2 Caspase ac 41.1 1.5E+02 0.0032 22.0 7.2 32 380-416 50-81 (88)
436 PF02184 HAT: HAT (Half-A-TPR) 40.2 70 0.0015 18.5 3.4 22 487-510 3-24 (32)
437 KOG0686 COP9 signalosome, subu 40.2 3.8E+02 0.0082 26.5 14.7 62 155-216 152-215 (466)
438 PRK09857 putative transposase; 40.0 2.3E+02 0.005 26.8 9.1 66 474-540 209-274 (292)
439 PF10366 Vps39_1: Vacuolar sor 39.9 1.8E+02 0.0038 22.6 8.1 26 264-289 42-67 (108)
440 PRK13342 recombination factor 38.8 4.2E+02 0.009 26.6 19.3 34 449-482 243-276 (413)
441 PF08311 Mad3_BUB1_I: Mad3/BUB 38.7 2.1E+02 0.0044 23.0 9.1 44 241-286 81-124 (126)
442 KOG0376 Serine-threonine phosp 38.6 69 0.0015 32.0 5.5 100 410-515 13-114 (476)
443 PF14561 TPR_20: Tetratricopep 37.8 1.7E+02 0.0037 21.8 8.6 32 259-290 20-51 (90)
444 smart00777 Mad3_BUB1_I Mad3/BU 37.5 2.2E+02 0.0047 22.9 9.5 42 524-565 81-123 (125)
445 cd00280 TRFH Telomeric Repeat 37.2 2.5E+02 0.0053 24.4 7.7 20 445-464 120-139 (200)
446 PF11817 Foie-gras_1: Foie gra 37.1 2.1E+02 0.0047 26.1 8.4 58 511-568 183-245 (247)
447 PF11817 Foie-gras_1: Foie gra 37.1 2.1E+02 0.0045 26.2 8.3 57 229-287 184-244 (247)
448 COG2178 Predicted RNA-binding 37.0 2.9E+02 0.0062 24.2 9.6 61 265-325 33-98 (204)
449 PF09454 Vps23_core: Vps23 cor 36.4 67 0.0014 22.2 3.7 47 470-517 7-53 (65)
450 PF04762 IKI3: IKI3 family; I 35.8 7E+02 0.015 28.3 16.6 200 158-392 699-927 (928)
451 COG2178 Predicted RNA-binding 35.7 2.8E+02 0.0061 24.2 7.9 30 117-146 28-57 (204)
452 PF11663 Toxin_YhaV: Toxin wit 35.7 31 0.00067 27.8 2.2 33 128-162 105-137 (140)
453 PF09477 Type_III_YscG: Bacter 35.6 2.1E+02 0.0046 22.2 10.4 8 235-242 52-59 (116)
454 KOG1308 Hsp70-interacting prot 35.6 26 0.00057 33.2 2.1 48 237-288 128-175 (377)
455 KOG4567 GTPase-activating prot 35.5 2.2E+02 0.0048 26.8 7.7 42 457-498 264-305 (370)
456 PRK11639 zinc uptake transcrip 34.9 2.4E+02 0.0052 24.0 7.7 41 162-202 34-74 (169)
457 KOG1586 Protein required for f 34.8 3.5E+02 0.0076 24.5 23.0 19 412-430 165-183 (288)
458 cd08819 CARD_MDA5_2 Caspase ac 34.5 1.9E+02 0.0042 21.4 7.6 65 385-455 21-85 (88)
459 PF09454 Vps23_core: Vps23 cor 34.4 80 0.0017 21.8 3.8 28 156-183 11-38 (65)
460 PRK13342 recombination factor 34.0 5E+02 0.011 26.0 19.3 45 369-413 230-277 (413)
461 KOG0376 Serine-threonine phosp 33.6 90 0.0019 31.2 5.4 102 196-305 12-114 (476)
462 PF11838 ERAP1_C: ERAP1-like C 33.6 4.3E+02 0.0092 25.1 21.9 84 239-325 146-230 (324)
463 KOG2300 Uncharacterized conser 33.5 5.3E+02 0.012 26.2 35.5 126 160-285 14-151 (629)
464 PRK09462 fur ferric uptake reg 32.2 2.7E+02 0.0058 23.0 7.5 35 168-202 32-66 (148)
465 PF11838 ERAP1_C: ERAP1-like C 31.1 4.7E+02 0.01 24.9 19.6 81 417-500 146-230 (324)
466 PRK09857 putative transposase; 30.8 4E+02 0.0086 25.2 9.1 63 227-293 210-272 (292)
467 PRK09462 fur ferric uptake reg 30.8 2.9E+02 0.0062 22.8 7.5 61 461-522 7-68 (148)
468 KOG0551 Hsp90 co-chaperone CNS 30.6 4.7E+02 0.01 25.2 9.1 95 227-322 85-179 (390)
469 PF12926 MOZART2: Mitotic-spin 30.4 2.3E+02 0.0049 21.0 8.1 43 492-534 29-71 (88)
470 PRK11639 zinc uptake transcrip 30.4 3.2E+02 0.0069 23.3 7.7 62 462-524 17-78 (169)
471 PF15297 CKAP2_C: Cytoskeleton 29.9 5.2E+02 0.011 25.0 10.2 64 452-517 119-186 (353)
472 PF09477 Type_III_YscG: Bacter 29.6 2.7E+02 0.0059 21.6 11.3 80 237-326 20-99 (116)
473 KOG4567 GTPase-activating prot 29.6 5E+02 0.011 24.7 9.7 44 208-251 263-306 (370)
474 KOG0687 26S proteasome regulat 29.4 5.2E+02 0.011 24.8 18.8 136 219-360 66-210 (393)
475 PF10569 Thiol-ester_cl: Alpha 28.9 9.9 0.00021 21.7 -1.1 8 7-14 12-19 (31)
476 PF09986 DUF2225: Uncharacteri 28.9 4.2E+02 0.0092 23.6 11.7 24 477-500 171-194 (214)
477 PF14561 TPR_20: Tetratricopep 28.5 2.5E+02 0.0054 20.9 10.3 58 503-560 19-77 (90)
478 PF14669 Asp_Glu_race_2: Putat 28.2 4.1E+02 0.0089 23.3 14.6 25 441-465 137-161 (233)
479 KOG2066 Vacuolar assembly/sort 27.9 8.2E+02 0.018 26.6 31.3 141 118-288 392-532 (846)
480 PF04034 DUF367: Domain of unk 27.7 3.2E+02 0.0068 22.0 6.5 61 506-569 66-127 (127)
481 PF15297 CKAP2_C: Cytoskeleton 27.2 5.8E+02 0.013 24.7 9.3 44 262-305 141-184 (353)
482 cd07153 Fur_like Ferric uptake 27.1 1.8E+02 0.0039 22.6 5.4 10 172-181 19-28 (116)
483 PF02847 MA3: MA3 domain; Int 26.7 2.9E+02 0.0062 21.3 6.5 21 267-287 8-28 (113)
484 cd02679 MIT_spastin MIT: domai 26.7 1.6E+02 0.0035 21.3 4.4 13 520-532 22-34 (79)
485 COG5116 RPN2 26S proteasome re 26.4 7.6E+02 0.016 25.8 11.4 54 86-143 28-84 (926)
486 KOG3807 Predicted membrane pro 26.3 5.8E+02 0.013 24.4 12.5 56 231-288 283-338 (556)
487 smart00777 Mad3_BUB1_I Mad3/BU 26.3 3.4E+02 0.0075 21.8 9.6 44 240-285 80-123 (125)
488 cd07153 Fur_like Ferric uptake 26.2 1.8E+02 0.0038 22.7 5.2 47 194-240 6-52 (116)
489 KOG3364 Membrane protein invol 25.6 3.8E+02 0.0082 22.0 9.8 46 171-216 53-99 (149)
490 cd00245 Glm_e Coenzyme B12-dep 25.0 73 0.0016 31.7 3.2 56 485-541 140-202 (428)
491 PF09868 DUF2095: Uncharacteri 24.9 3.1E+02 0.0067 21.4 5.7 31 477-508 67-97 (128)
492 PF03745 DUF309: Domain of unk 24.6 2.4E+02 0.0051 19.3 6.5 31 165-195 11-41 (62)
493 PF01475 FUR: Ferric uptake re 24.5 1.8E+02 0.0038 22.9 4.9 16 169-184 23-38 (120)
494 COG4941 Predicted RNA polymera 24.1 6.6E+02 0.014 24.3 11.7 117 416-535 271-394 (415)
495 KOG1839 Uncharacterized protei 23.9 1.2E+03 0.026 27.2 12.2 131 434-564 971-1122(1236)
496 KOG0551 Hsp90 co-chaperone CNS 23.8 6.6E+02 0.014 24.2 9.0 93 439-533 84-180 (390)
497 PF04910 Tcf25: Transcriptiona 23.8 7E+02 0.015 24.5 20.4 55 303-357 110-165 (360)
498 KOG0991 Replication factor C, 23.6 5.7E+02 0.012 23.3 13.1 137 367-512 131-279 (333)
499 PF02847 MA3: MA3 domain; Int 23.5 3.5E+02 0.0075 20.8 7.0 17 375-391 11-27 (113)
500 PF10516 SHNi-TPR: SHNi-TPR; 22.6 1.9E+02 0.0041 17.5 3.8 27 543-569 3-29 (38)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.8e-68 Score=566.34 Aligned_cols=517 Identities=18% Similarity=0.238 Sum_probs=462.5
Q ss_pred CCCccchhhhhhhhccccchhhhhhhhcccccCCCCch-hHHHHHHHHHH--HhHHHHHHHHhcCCCCCCCCcCHHhHHH
Q 008249 47 DNLPCTLNDIMSYVGDQCRSKTRHWFSNKDSDNEGNPQ-AVFNALDLILK--ENLDRLKTMRDTGPVRCTLETDYRRHVA 123 (572)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (572)
++.|+.+..+.++........+...+.........++. .+++.+...+. +....+..+++.+. .||..+|+.
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-----~pd~~Tyn~ 442 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-----NPTLSTFNM 442 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-----CCCHHHHHH
Confidence 44556666666665444444455555532222222233 44555555443 22444455555554 399999999
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 008249 124 VIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNE 203 (572)
Q Consensus 124 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 203 (572)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 008249 204 LDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALAL 283 (572)
Q Consensus 204 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 283 (572)
+++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...+. ...||..+|++++.+|++.|++++|.++
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~-gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH-PIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999987432 2339999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008249 284 WNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA 363 (572)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 363 (572)
|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008249 364 PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALI 443 (572)
Q Consensus 364 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 443 (572)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHC
Q 008249 444 LAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN----L-------------------GHIHLALQLYDEMLRR 500 (572)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~A~~~~~~m~~~ 500 (572)
.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ + +..++|..+|++|++.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999876432 1 1246799999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 501 GITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 501 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+++++++.+. .++|..+|++|.+.+
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 999999999999998889999999999999999888899999999999998432 468999999998653
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-66 Score=551.99 Aligned_cols=477 Identities=18% Similarity=0.249 Sum_probs=440.5
Q ss_pred hHHHHHHHHHH-HhHHHHHHHHhcCCCCCCCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 008249 85 AVFNALDLILK-ENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNEL 163 (572)
Q Consensus 85 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 163 (572)
....++..+.+ +.+..+..+++.++.+.-++++..+++.++..|.+.|.+++|..+|+.|.. |+..+|+.++.+|
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVC 447 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHH
Confidence 34445555543 234444444544443222567888899999999999999999999999875 8999999999999
Q ss_pred HHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHH
Q 008249 164 CKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAV 243 (572)
Q Consensus 164 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 243 (572)
++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008249 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ--KNIQTDIVAYNVLINGFCLNGDISSAFAYFCQ 321 (572)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 321 (572)
++|++|.+.+. . ||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|+.
T Consensus 528 ~lf~~M~~~Gv-~--PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 528 GAYGIMRSKNV-K--PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHcCC-C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999998876 6 9999999999999999999999999999986 57899999999999999999999999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 008249 322 MLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEP 401 (572)
Q Consensus 322 m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 401 (572)
|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008249 402 HIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGAS 481 (572)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 481 (572)
.+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHcCCC
Q 008249 482 CNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCA----R-------------------GNMKEAEEVFAKIQTLGLA 538 (572)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~g~~ 538 (572)
++.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..++|..+|++|.+.|+.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999866432 1 2246799999999999999
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 539 IDHIPFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 539 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
||..||+.++.++++.+..+.+..++++|-
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 999999999988889999999999988773
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-63 Score=528.25 Aligned_cols=453 Identities=20% Similarity=0.258 Sum_probs=426.9
Q ss_pred HHHHHHHhcCCCCCCCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHH
Q 008249 99 DRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIRE 178 (572)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 178 (572)
+.+..++..+....++.||..+|+.++.++++.++++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++
T Consensus 104 ~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 183 (697)
T PLN03081 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183 (697)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 33334444333233578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCC
Q 008249 179 MSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKAT 258 (572)
Q Consensus 179 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 258 (572)
|. .||..+||.+|.+|++.|++++|+++|++|.+.|+.|+..||+.++.++++.|..+.+.+++..+.+.+. .
T Consensus 184 m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~-~-- 256 (697)
T PLN03081 184 MP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV-V-- 256 (697)
T ss_pred CC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCC-C--
Confidence 94 5899999999999999999999999999999999999999999999999999999999999999999886 6
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008249 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLL 338 (572)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 338 (572)
++..+|++|+++|++.|++++|.++|++|. .+|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll 332 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 899999999999999999999999999997 5799999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008249 339 NCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLS 418 (572)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 418 (572)
.+|++.|++++|.+++..|.+.|+.||..+|+.++++|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|+.+
T Consensus 333 ~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~ 408 (697)
T PLN03081 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGT 408 (697)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999965 68899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 419 NAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLL-DGIFPDVFTYNLLIGASCNLGHIHLALQLYDEM 497 (572)
Q Consensus 419 ~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (572)
+|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++|
T Consensus 409 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999986 599999999999999999999999999999876
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 498 LRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI-DHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 498 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
++.|+..+|++|+.+|...|+++.|..+++++.+. .| +..+|..|++.|++.|++++|.+++++|.+.+
T Consensus 489 ---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 489 ---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred ---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999765 55 46789999999999999999999999997653
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.3e-64 Score=542.77 Aligned_cols=435 Identities=22% Similarity=0.278 Sum_probs=301.6
Q ss_pred CCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 008249 113 TLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYN 192 (572)
Q Consensus 113 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 192 (572)
|+.||..||+.++++++..+++..+.+++..|.+.|+.|+..+++.|+.+|++.|++++|.++|++|. .||..+||
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n 257 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWN 257 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhH
Confidence 56666666666666666666666666666666666666666666666666666666666666666662 35666666
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH
Q 008249 193 AFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYF 272 (572)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (572)
++|.+|++.|++++|+++|++|...|+.||..||+.++.++++.|+++.|.+++..+.+.|. . ||..+|++|+.+|+
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~-~--~d~~~~n~Li~~y~ 334 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF-A--VDVSVCNSLIQMYL 334 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-c--cchHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666554 4 56666666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 008249 273 KNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASH 352 (572)
Q Consensus 273 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 352 (572)
+.|++++|.++|++|. .||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+
T Consensus 335 k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 410 (857)
T PLN03077 335 SLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410 (857)
T ss_pred hcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHH
Confidence 6666666666666664 355666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----
Q 008249 353 FYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLML---- 428 (572)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---- 428 (572)
+++.+.+.|+.|+..+|+.++++|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~ 486 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLK 486 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCC
Confidence 666666666666666666666666666666666666665543 244455555555555555555555555554
Q ss_pred ------------------------------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008249 429 ------------------------------SFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLI 478 (572)
Q Consensus 429 ------------------------------~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 478 (572)
+.|+.+|..++|.|+.+|++.|++++|.++|+++ .||..+|+.+|
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI 561 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILL 561 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHH
Confidence 4444444444455555566666666666666554 57888899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCChHHHHHHHHHHHhcCCH
Q 008249 479 GASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQ-TLGLAIDHIPFRILKKRYRRMKES 557 (572)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~ 557 (572)
.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.++++|++.|++
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~ 641 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999999999999999999998 678999999999999999999999
Q ss_pred HHHHHHHHHH
Q 008249 558 DKARDIHQKW 567 (572)
Q Consensus 558 ~~A~~~~~~~ 567 (572)
++|.+++++|
T Consensus 642 ~eA~~~~~~m 651 (857)
T PLN03077 642 TEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHC
Confidence 9999999988
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.9e-63 Score=538.54 Aligned_cols=466 Identities=19% Similarity=0.279 Sum_probs=427.4
Q ss_pred chhHHHHHHHHHH--HhHHHHHHHHhcCCCCCCCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHH
Q 008249 83 PQAVFNALDLILK--ENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLV 160 (572)
Q Consensus 83 ~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 160 (572)
...++|.+..++. +..+.+..+++.++ +||+.+||++|.+|++.|++++|+++|++|...|+.||..+|+.++
T Consensus 120 ~~~~~n~li~~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll 194 (857)
T PLN03077 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL 194 (857)
T ss_pred CchHHHHHHHHHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 3456777776652 33555566666654 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChh
Q 008249 161 NELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLG 240 (572)
Q Consensus 161 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 240 (572)
.+|++.++++.+.+++..|.+.|..|+..+|+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~ 270 (857)
T PLN03077 195 RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECL 270 (857)
T ss_pred HHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999999999999999996 578999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 008249 241 DAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFC 320 (572)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 320 (572)
+|.++|++|...+. . ||..+|+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 271 eAl~lf~~M~~~g~-~--Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 347 (857)
T PLN03077 271 EGLELFFTMRELSV-D--PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347 (857)
T ss_pred HHHHHHHHHHHcCC-C--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 99999999999876 6 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008249 321 QMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPE 400 (572)
Q Consensus 321 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 400 (572)
+|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|..|+
T Consensus 348 ~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~ 423 (857)
T PLN03077 348 RME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY 423 (857)
T ss_pred hCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcc
Confidence 996 4789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008249 401 PHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGA 480 (572)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 480 (572)
..+|+.|+++|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..||+.++.+
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a 498 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSA 498 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHH
Confidence 99999999999999999999999999975 6888999999999999999999999999986 488888888777766
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008249 481 SCNLGHIHLALQLYDEMLRRGI------------------------------TPDIITYTELIKGHCARGNMKEAEEVFA 530 (572)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~g~------------------------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 530 (572)
|++.|+++.+.+++..+.+.|+ .||..+|+++|.+|++.|+.++|.++|+
T Consensus 499 ~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred HhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 6555555555555555544443 5788899999999999999999999999
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 531 KIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 531 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
+|.+.|+.||..||+.++.+|++.|++++|.++|++|.+
T Consensus 579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999984
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-60 Score=504.75 Aligned_cols=440 Identities=18% Similarity=0.209 Sum_probs=422.1
Q ss_pred CCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCC-CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 008249 114 LETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKG-TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYN 192 (572)
Q Consensus 114 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 192 (572)
..++..+|+.+|.+|.+.|++++|+++|+.|...+ ..|+..+|+.++.++++.++++.|.+++..|.+.|..||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34566789999999999999999999999999864 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH
Q 008249 193 AFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYF 272 (572)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (572)
.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.+. . |+..+|+.++.+++
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~-~--p~~~t~~~ll~a~~ 235 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS-D--AEPRTFVVMLRASA 235 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-C--CChhhHHHHHHHHh
Confidence 99999999999999999999996 47999999999999999999999999999998876 6 89999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 008249 273 KNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASH 352 (572)
Q Consensus 273 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 352 (572)
+.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.+
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred cCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999964 589999999999999999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008249 353 FYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGV 432 (572)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 432 (572)
+|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|..|+..+|++|+++|++.|++++|.++|++|.+
T Consensus 312 lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--- 388 (697)
T PLN03081 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--- 388 (697)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHH
Q 008249 433 SSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLR-RGITPDIITYTE 511 (572)
Q Consensus 433 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ 511 (572)
||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.
T Consensus 389 -~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred -CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 799999999999999999999999999999999999999999999999999999999999999986 699999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 512 LIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 512 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
++.+|++.|++++|.+++++| +..|+..+|++|+.+|+..|+++.|..+++++++.+
T Consensus 468 li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~ 524 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG 524 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC
Confidence 999999999999999998876 578999999999999999999999999999987643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.6e-29 Score=278.99 Aligned_cols=438 Identities=13% Similarity=0.037 Sum_probs=357.6
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
+++..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+..| .+..++..+
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 539 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILAL 539 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHH
Confidence 4566778888888888888888888888887653 44566677778888888888888888888877665 467778888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc
Q 008249 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (572)
...+.+.|++++|...++++...+ +.+...+..++..+.+.|++++|..+++.+....+ .+...|..++..+...
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP----DSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHc
Confidence 888888888888888888887654 34566777788888888888888888888887654 6778888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 008249 275 GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFY 354 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 354 (572)
|++++|...|+++.+.. +.+...+..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|.+++
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888888765 4567778888888888888888888888887752 345677888888888889999999988
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008249 355 GVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSS 434 (572)
Q Consensus 355 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 434 (572)
+.+.... +.+...+..+...+...|++++|.+.++.+.+.+. +..++..++.++.+.|++++|...++.+.+..+ .
T Consensus 693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~ 768 (899)
T TIGR02917 693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-N 768 (899)
T ss_pred HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-C
Confidence 8888764 45677788888888899999999999999888654 446677788889999999999999988887644 4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008249 435 NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIK 514 (572)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 514 (572)
+...+..+...|...|++++|...|+++.+... ++...++.+...+...|+ .+|+..++++.+.. +.+..++..+..
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~ 845 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGW 845 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 778888888999999999999999999988643 467888889999999999 88999999988752 445677888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 515 GHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 515 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
.+...|++++|.++++++.+.+. .+..++..++.++.+.|+.++|.+++++|++
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 99999999999999999999753 3888899999999999999999999999874
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.7e-28 Score=272.47 Aligned_cols=435 Identities=16% Similarity=0.085 Sum_probs=322.6
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYC 199 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 199 (572)
.+..++..+.+.|++++|..+++.+... .+++..++..+...+...|++++|.+.|+++.+..+ .+...+..+...+.
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 510 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDI 510 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHH
Confidence 3444555555666666666666665543 244566677777777777777777777777776554 34556666777777
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHH
Q 008249 200 RVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQ 279 (572)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 279 (572)
..|++++|.+.|+++...+ +.+..++..+...+.+.|+.++|...++++...++ .+...+..++..|.+.|++++
T Consensus 511 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP----QEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----cchhHHHHHHHHHHHCCCHHH
Confidence 7777777777777776653 33566677777777777777777777777777654 566677777777888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008249 280 ALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSK 359 (572)
Q Consensus 280 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 359 (572)
|.++++.+.+.. +.+...|..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|...++.+.+
T Consensus 586 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 586 ALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888888777654 5567777788888888888888888888777653 33556677777778888888888888887776
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008249 360 TGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTF 439 (572)
Q Consensus 360 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 439 (572)
.. +.+..++..+...+...|++++|.++++.+.+..+. +...+..+...+...|++++|...++.+...+ |+..++
T Consensus 664 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 739 (899)
T TIGR02917 664 LK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNA 739 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHH
Confidence 53 345677778888888888888888888888776543 66677778888888888888888888887754 344667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008249 440 NALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCAR 519 (572)
Q Consensus 440 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 519 (572)
..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++|...|+++.+.. +++..++..++..+...
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 777888888888888888888888764 3367788888888888888999999888888764 66778888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 520 GNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 520 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
|+ .+|...++++.+.. +.+...+..++..+...|++++|.++|+++++.+
T Consensus 818 ~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 818 KD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred Cc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 88 77888888888762 3355667788888899999999999999998765
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=7.6e-21 Score=212.20 Aligned_cols=186 Identities=16% Similarity=0.099 Sum_probs=101.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---------
Q 008249 374 QGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALIL--------- 444 (572)
Q Consensus 374 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~--------- 444 (572)
..+...|++++|++.+++..+..+. ++..+..+...|.+.|++++|...++++.+..+. +...+..+..
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHH
Confidence 3344567777777777777765544 4556666677777777777777777776653321 2222221111
Q ss_pred -----------------------------------HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008249 445 -----------------------------------AETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHL 489 (572)
Q Consensus 445 -----------------------------------~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (572)
.+...|+.++|.++++. ..++...+..+...+.+.|++++
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~ 621 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAA 621 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHH
Confidence 22233333333333320 11233344455556666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 490 ALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI-DHIPFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 490 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
|+..|++..+.. +.+...+..++..|...|++++|.+.++.+.+. .| +...+..+..++...|++++|.+++++++
T Consensus 622 A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 622 ARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 666666666542 334555666666666666666666666655543 23 23344455556666666666666666655
Q ss_pred h
Q 008249 569 L 569 (572)
Q Consensus 569 ~ 569 (572)
+
T Consensus 699 ~ 699 (1157)
T PRK11447 699 P 699 (1157)
T ss_pred h
Confidence 4
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=9.7e-23 Score=193.35 Aligned_cols=428 Identities=18% Similarity=0.156 Sum_probs=345.7
Q ss_pred HhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008249 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGY 198 (572)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 198 (572)
...-.+-..+.+..+++...+--...++. .+.-..+|..+.+.+-..|++++|+..++.+.+..| ..+..|..+..++
T Consensus 83 ~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p-~fida~inla~al 160 (966)
T KOG4626|consen 83 ERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALALYRAAIELKP-KFIDAYINLAAAL 160 (966)
T ss_pred cceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHH
Confidence 33444455667777777666554444443 234567889999999999999999999999999876 4788999999999
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhHH-HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCH
Q 008249 199 CRVNELDKALHLFSTMANNGIRPNRVTH-NILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDK 277 (572)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 277 (572)
...|+.+.|.+.|.+.++. .|+.... +.+...+...|++++|...+.++++..+ .-..+|+.|...+-..|+.
T Consensus 161 ~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp----~fAiawsnLg~~f~~~Gei 234 (966)
T KOG4626|consen 161 VTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP----CFAIAWSNLGCVFNAQGEI 234 (966)
T ss_pred HhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC----ceeeeehhcchHHhhcchH
Confidence 9999999999999998874 5665543 3455566678999999999999998765 6678899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHH
Q 008249 278 FQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD-VITYNTLLNCLCKQGKLDEASHFYGV 356 (572)
Q Consensus 278 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 356 (572)
..|+.-|++..+.+ +--...|-.|...|...+.+++|...|.+.... .|+ ...+..+...|...|..+.|...+++
T Consensus 235 ~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykr 311 (966)
T KOG4626|consen 235 WLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKR 311 (966)
T ss_pred HHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHH
Confidence 99999999998774 334678889999999999999999999887764 444 56777788888999999999999999
Q ss_pred HHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 008249 357 LSKTGVAPD-QISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSN 435 (572)
Q Consensus 357 ~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 435 (572)
.++. .|+ ...|+.+..++-..|++.+|.+.+.+.+...+. .....+.|...|...|.++.|..+|....+..+. -
T Consensus 312 al~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~ 387 (966)
T KOG4626|consen 312 ALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-F 387 (966)
T ss_pred HHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-h
Confidence 9885 444 578999999999999999999999999987654 6677888999999999999999999998875322 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 008249 436 VFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD-VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI-ITYTELI 513 (572)
Q Consensus 436 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~ 513 (572)
....+.|...|-+.|++++|+..|++.++ +.|+ ...|+.+...|-..|+.+.|.+.+.+.+.. .|.. ..++.|.
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLa 463 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLA 463 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHH
Confidence 56788999999999999999999999887 6777 678999999999999999999999999874 4554 7889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 514 KGHCARGNMKEAEEVFAKIQTLGLAIDHI-PFRILKKRYRRMKESDKARDIHQKW 567 (572)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 567 (572)
..|-..|++.+|+.-+++..+. +||.. .|-.++.++.-..+|.+--+.++++
T Consensus 464 si~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 464 SIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred HHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence 9999999999999999999886 67643 5666666665555555544444444
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=3.4e-21 Score=214.99 Aligned_cols=429 Identities=12% Similarity=0.021 Sum_probs=329.1
Q ss_pred HHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC-HHHHH-----------
Q 008249 125 IRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPN-CATYN----------- 192 (572)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~----------- 192 (572)
...+...|++++|+..|++.++.. +.+..++..+...+.+.|++++|+..|++..+..+... ...|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 456677899999999999988863 44778888899999999999999999999888665432 12221
Q ss_pred -HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH
Q 008249 193 -AFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY 271 (572)
Q Consensus 193 -~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (572)
.....+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.|+++++..+ .+...+..+...|
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p----~~~~a~~~L~~l~ 429 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP----GNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHH
Confidence 22345678899999999999998763 33566777888899999999999999999998765 5666777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCC--------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH
Q 008249 272 FKNGDKFQALALWNDMFQKNI--------QTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCK 343 (572)
Q Consensus 272 ~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 343 (572)
. .++.++|+..++.+..... ......+..+...+...|++++|++.|++..+.. +-+...+..+...|.+
T Consensus 430 ~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 430 R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4 4678889888876543210 0012245566777888999999999999998763 2245667788889999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhc
Q 008249 344 QGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPH---------IWNVIIDGYGRC 414 (572)
Q Consensus 344 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~li~~~~~~ 414 (572)
.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+...
T Consensus 508 ~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 999999999999988753 3355555555566778899999999998875433222221 123456778899
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 415 GDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLY 494 (572)
Q Consensus 415 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 494 (572)
|+.++|..+++. .+.+...+..+...+.+.|++++|...|++..+.... +...+..++..+...|++++|++.+
T Consensus 587 G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 587 GKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999998872 2346667788889999999999999999999986433 5788899999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 495 DEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLA--I---DHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 495 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
+...+.. +.+..++..+..++...|++++|.++++++...... | +...+..+...+...|++++|.+.|++.+.
T Consensus 661 ~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 661 AKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9887642 345667788899999999999999999999875321 2 224566778889999999999999999874
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=1.1e-21 Score=186.28 Aligned_cols=381 Identities=18% Similarity=0.135 Sum_probs=262.7
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHH-HHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCA-TYNAFI 195 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li 195 (572)
-..+|..+.+.+-..|++++|+.+++.+++.. +.....|..+..++...|+.+.|...|.+..+.+| +.. ....+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP--~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNP--DLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCc--chhhhhcchh
Confidence 44577777777777788888888777777763 33566777777777777777777777777777543 332 233344
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc
Q 008249 196 TGYCRVNELDKALHLFSTMANNGIRPN-RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (572)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (572)
..+-..|+.++|...|.+..+. .|. ...|+.|...+...|+...|++.|+++++.++ .-...|-.|...|...
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP----~f~dAYiNLGnV~ke~ 265 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP----NFLDAYINLGNVYKEA 265 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC----cchHHHhhHHHHHHHH
Confidence 4444567777777777777654 333 34577777777777777778888877777665 4566777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCCHHHHHHH
Q 008249 275 GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD-VITYNTLLNCLCKQGKLDEASHF 353 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~ 353 (572)
+.+++|+..+.+..... +-..+.+..+...|..+|..+-|+..|++..+. .|+ ...|+.|..++-..|++.+|.+.
T Consensus 266 ~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 266 RIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred hcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHH
Confidence 77777777777776653 334566666777777777788888777777765 343 45677777777777888888777
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008249 354 YGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVS 433 (572)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 433 (572)
+.+.... .+......+.|...|...|.+++|..+|....+-.+. -....+.|...|-+.|++++|..-+++..+- .
T Consensus 343 YnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~ 418 (966)
T KOG4626|consen 343 YNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--K 418 (966)
T ss_pred HHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--C
Confidence 7777765 2334566777777777777788887777777765333 2345677777777778888887777777763 3
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHH
Q 008249 434 SN-VFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD-VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI-ITYT 510 (572)
Q Consensus 434 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~ 510 (572)
|+ ...|+.+...|-..|+.+.|...+.+.+.. .|. ...++.|...|-..|++.+|+.-|++..+ ++||. ..|-
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~c 494 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYC 494 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhh
Confidence 43 456777777777777777777777777763 344 55667777777777888888777777776 35554 4455
Q ss_pred HHHHHHH
Q 008249 511 ELIKGHC 517 (572)
Q Consensus 511 ~l~~~~~ 517 (572)
.++.++-
T Consensus 495 Nllh~lq 501 (966)
T KOG4626|consen 495 NLLHCLQ 501 (966)
T ss_pred HHHHHHH
Confidence 5554443
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=8.7e-20 Score=191.41 Aligned_cols=428 Identities=15% Similarity=0.044 Sum_probs=228.9
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYC 199 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 199 (572)
.+....+.+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++...+..| .+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 4567788899999999999999998875 57888899999999999999999999999999776 46778999999999
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHH
Q 008249 200 RVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQ 279 (572)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 279 (572)
..|++++|+.-|......+-. +......++..+.. ..+.......+...+ .+...+..+.. |......+.
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~----~~~~~~~~~~~-~~~~~~~~~ 275 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETKP----ENLPSVTFVGN-YLQSFRPKP 275 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcCC----CCCCCHHHHHH-HHHHccCCc
Confidence 999999999988776554211 21111222221111 122333333333332 11111111111 111111111
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHH---HHhCCCHHHHHHHHHHHHHCC-CCC-CHhHHHHHHHHHHHcCCHHHHHHH
Q 008249 280 ALALWNDMFQKNIQTD-IVAYNVLING---FCLNGDISSAFAYFCQMLKRG-FLP-DVITYNTLLNCLCKQGKLDEASHF 353 (572)
Q Consensus 280 A~~~~~~~~~~~~~~~-~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~g~~~~A~~~ 353 (572)
...-+....+. .+. ...+..+... ....+++++|.+.|+...+.+ ..| ....+..+...+...|++++|...
T Consensus 276 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 276 RPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred chhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 11111111100 000 0001111000 012245556666666555443 122 233445555555556666666666
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008249 354 YGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVS 433 (572)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 433 (572)
++...... +.....|..+...+...|++++|...++++.+..+. ++..|..+...+...|++++|...|++..+..+.
T Consensus 354 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~ 431 (615)
T TIGR00990 354 LSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431 (615)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc
Confidence 66555532 112345555555555666666666666665554332 4455555555666666666666666665554322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H-----
Q 008249 434 SNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI-I----- 507 (572)
Q Consensus 434 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~----- 507 (572)
+...+..+...+.+.|++++|...+++..+.. ..+...|+.+...+...|++++|+..|++..+.. |+. .
T Consensus 432 -~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~ 507 (615)
T TIGR00990 432 -FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNV 507 (615)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccH
Confidence 34445555555556666666666666555432 1134555555566666666666666666655431 110 0
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 508 --TYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 508 --~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
.++..+..+...|++++|.+++++..+.. +.+...+..++..+.+.|++++|.+.|++.++
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 11111112223456666666666655542 11233455556666666666666666665543
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=3.8e-21 Score=191.61 Aligned_cols=308 Identities=18% Similarity=0.124 Sum_probs=154.8
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008249 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
.+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.++.............+..++..|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3344555555555555555542 123344555555555555555555555555543210000012344455555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 008249 277 KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGV 356 (572)
Q Consensus 277 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 356 (572)
+++|+.+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 555555555554432 23444455555555555555555555555544322111100
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008249 357 LSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNV 436 (572)
Q Consensus 357 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 436 (572)
....+..+...+.+.|++++|...++++.+.... +...+..+...+.+.|++++|..+++++.+.++....
T Consensus 179 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 249 (389)
T PRK11788 179 --------IAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS 249 (389)
T ss_pred --------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH
Confidence 0112233444445555555555555555543322 3344555555555566666666666555543322223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008249 437 FTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGH 516 (572)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 516 (572)
.+++.++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~ 325 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHh
Confidence 44555566666666666666666666553 344444455666666666666666666666553 45655666555554
Q ss_pred Hh---cCCHHHHHHHHHHHHHcCCCCChH
Q 008249 517 CA---RGNMKEAEEVFAKIQTLGLAIDHI 542 (572)
Q Consensus 517 ~~---~g~~~~A~~~~~~m~~~g~~p~~~ 542 (572)
.. .|+.+++..++++|.+.++.|++.
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 43 345666666666666555554443
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=4.6e-21 Score=191.03 Aligned_cols=303 Identities=16% Similarity=0.103 Sum_probs=193.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC---HhHHHHHHHH
Q 008249 156 HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPN---RVTHNILVHA 232 (572)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~ 232 (572)
.......+...|++++|...|+++.+.+| .+..++..+...+...|++++|..+++.+...+..++ ..++..+...
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 33345566788999999999999999876 4677899999999999999999999999987542222 2567888999
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHh
Q 008249 233 LCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDI----VAYNVLINGFCL 308 (572)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~ 308 (572)
|.+.|++++|..+|+++.+..+ .+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGD----FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 9999999999999999998654 77889999999999999999999999999876522211 234455566667
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 008249 309 NGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREF 388 (572)
Q Consensus 309 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 388 (572)
.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++...+......+++.++.+|...|++++|...
T Consensus 193 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 193 RGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred CCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777766542 2233445555556666666666666666655432111123344444455555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhC
Q 008249 389 LLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETR---GGSIFDAFSLKKEMLLD 465 (572)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~ 465 (572)
++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..++++|.+.
T Consensus 272 l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 272 LRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 55544432 22233344444444444444444444444332 2344444444433332 22444444444444443
Q ss_pred CCC
Q 008249 466 GIF 468 (572)
Q Consensus 466 ~~~ 468 (572)
++.
T Consensus 348 ~~~ 350 (389)
T PRK11788 348 QLK 350 (389)
T ss_pred HHh
Confidence 333
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=4.3e-19 Score=185.52 Aligned_cols=383 Identities=10% Similarity=-0.004 Sum_probs=265.9
Q ss_pred HHHhCCChhhHHHHHHHHHhCC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 008249 127 DLCLGGKIGTALWLRRKMIQKG--TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNEL 204 (572)
Q Consensus 127 ~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 204 (572)
.+.++.+++.-.-+|....+.- -..+..-...++..+.+.|++++|..+++......|.+ ...+..++.+....|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCH
Confidence 3456667766666665544321 11233334556667778888888888888888877653 44555555666778888
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 205 DKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALW 284 (572)
Q Consensus 205 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 284 (572)
++|.+.|+++.... +.+...+..+...+...|++++|...+++++...+ .+...+..++..+...|++++|...+
T Consensus 93 ~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P----~~~~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 93 DAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS----GNSQIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHCCChHHHHHHH
Confidence 88888888887753 22556677777888888888888888888888665 67778888888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008249 285 NDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAP 364 (572)
Q Consensus 285 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 364 (572)
+.+.... +.+...+..+ ..+...|++++|...++.+.+....++...+..+...+.+.|++++|...++.+.... +.
T Consensus 168 ~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~ 244 (656)
T PRK15174 168 RTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LD 244 (656)
T ss_pred HHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC
Confidence 8776653 2233333333 3467788888888888887765433344445555667778888888888888887753 34
Q ss_pred CHhhHHHHHHHHHHcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008249 365 DQISYKTIIQGLCIHGDIVK----AREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFN 440 (572)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 440 (572)
+...+..+...+...|++++ |...+++..+..+. +...+..+...+...|++++|...+++..+..+. +...+.
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~ 322 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRA 322 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 56677778888888888775 78888888776544 6667778888888888888888888887775433 455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008249 441 ALILAETRGGSIFDAFSLKKEMLLDGIFPDV-FTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCAR 519 (572)
Q Consensus 441 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 519 (572)
.+..++.+.|++++|...++.+... .|+. ..+..+..++...|+.++|...|++..+. .|+.. .
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~--~P~~~-----------~ 387 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA--RASHL-----------P 387 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Chhhc-----------h
Confidence 7777788888888888888887765 3443 33334556677788888888888887764 34432 2
Q ss_pred CCHHHHHHHHHHHHHc
Q 008249 520 GNMKEAEEVFAKIQTL 535 (572)
Q Consensus 520 g~~~~A~~~~~~m~~~ 535 (572)
..+++|...+.+..+.
T Consensus 388 ~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 388 QSFEEGLLALDGQISA 403 (656)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 4455677777766664
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=1.9e-18 Score=180.60 Aligned_cols=358 Identities=10% Similarity=-0.012 Sum_probs=287.7
Q ss_pred HhHHHHHHHHhcCCCCCC-CCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHH
Q 008249 96 ENLDRLKTMRDTGPVRCT-LETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADH 174 (572)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 174 (572)
+.+..+..++...+.+.. -..+......++..+.+.|++++|..+++..+... +-+...+..++.+....|+++.|..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~ 97 (656)
T PRK15174 19 EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQ 97 (656)
T ss_pred hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHH
Confidence 445556666655442211 11233345567788899999999999999998873 4456667777788888999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 008249 175 VIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
.++++.+..| .+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++.+....+
T Consensus 98 ~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P 175 (656)
T PRK15174 98 VVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP 175 (656)
T ss_pred HHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Confidence 9999999877 467889999999999999999999999998753 33567788899999999999999999999988665
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHH
Q 008249 255 GKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITY 334 (572)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 334 (572)
.+...+..+. .+...|++++|...++.+.+....++...+..+...+...|++++|+..++++.+.. +.+...+
T Consensus 176 ----~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 176 ----PRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred ----CCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 4444554443 478899999999999998876533445555666788999999999999999999864 3457778
Q ss_pred HHHHHHHHHcCCHHH----HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008249 335 NTLLNCLCKQGKLDE----ASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDG 410 (572)
Q Consensus 335 ~~ll~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 410 (572)
..+...+...|++++ |...++...+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 889999999999986 899999998863 446788999999999999999999999999987655 66778889999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 411 YGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLD 465 (572)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 465 (572)
+.+.|++++|...++.+.+.++. +...+..+..++...|+.++|...|++..+.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999876432 2334445567889999999999999999875
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=5.8e-19 Score=188.54 Aligned_cols=416 Identities=10% Similarity=-0.000 Sum_probs=273.0
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008249 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (572)
.+...-.-.+......|+.++|++++.+..... +.+...+..+...+.+.|++++|..++++..+..| .+...+..+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 344445566777788899999999988887632 44555688888889999999999999999888765 4566777888
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC
Q 008249 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (572)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (572)
..+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++++..+ .+...+..+...+...|
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P----~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP----QTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCC
Confidence 88888999999999999988762 33455 77788888889999999999999998776 67777777888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHh-----CCCH---HHHHHHHHHHHHC-CCCCCHh-HHH----
Q 008249 276 DKFQALALWNDMFQKNIQTDI------VAYNVLINGFCL-----NGDI---SSAFAYFCQMLKR-GFLPDVI-TYN---- 335 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~-----~g~~---~~a~~~~~~m~~~-g~~p~~~-~~~---- 335 (572)
..++|++.++.... .|+. .....++..... .+++ ++|++.++.+.+. ...|+.. .+.
T Consensus 165 ~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 165 LSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred ChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 88889888876654 2221 111222222221 1223 5677777777654 2223221 111
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHH
Q 008249 336 TLLNCLCKQGKLDEASHFYGVLSKTGVA-PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVP---EPHIWNVIIDGY 411 (572)
Q Consensus 336 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~ 411 (572)
..+..+...|++++|...|+.+.+.+.+ |+. ....+...|...|++++|+..|+++.+..... .......+..++
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 1133455667778888888777766422 222 12224567777788888888877776543221 123455556667
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008249 412 GRCGDLSNAFSIRDLMLSFGV-----------SSN---VFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLL 477 (572)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 477 (572)
...|++++|..+++.+.+..+ .|+ ...+..+...+...|++++|+++++++...... +...+..+
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~l 399 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDY 399 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 777888888877777766421 112 123445556666777777777777777665322 45666677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHH
Q 008249 478 IGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRIL 547 (572)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 547 (572)
...+...|++++|++.+++..+.. |.+...+...+..+...|++++|..+++++.+. .|+......+
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~ 466 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRL 466 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 777777777777777777776642 333455566666677777777777777777765 4555443333
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=8.6e-18 Score=179.57 Aligned_cols=407 Identities=12% Similarity=0.044 Sum_probs=279.8
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHH
Q 008249 150 VPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNIL 229 (572)
Q Consensus 150 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 229 (572)
+.++....-.+......|+.++|++++.+.....+ .+...+..+...+...|++++|.++|++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~-~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ-LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 34555556667777788888888888888876333 455567888888888888888888888887652 3345666777
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 008249 230 VHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN 309 (572)
Q Consensus 230 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 309 (572)
...+...|++++|...++++++..+ .+.. +..+...+...|+.++|+..++++.+.. +.+...+..+...+...
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P----~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAP----DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC----CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 7788888888888888888888665 5666 7788888888888888888888888775 44566666677777788
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH------hHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhC-CCCCCHh-hHH---
Q 008249 310 GDISSAFAYFCQMLKRGFLPDV------ITYNTLLNCLC-----KQGKL---DEASHFYGVLSKT-GVAPDQI-SYK--- 370 (572)
Q Consensus 310 g~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~~--- 370 (572)
+..++|++.++.... .|+. .....++.... ..+++ ++|.+.++.+.+. ...|+.. .+.
T Consensus 164 ~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~ 240 (765)
T PRK10049 164 RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRAR 240 (765)
T ss_pred CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHH
Confidence 888888888876553 1211 11222222221 22233 6677777777753 1122221 111
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHH
Q 008249 371 -TIIQGLCIHGDIVKAREFLLSMLEKSVV-PEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSS---NVFTFNALILA 445 (572)
Q Consensus 371 -~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~ll~~ 445 (572)
..+..+...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|...|+.+.+..... .......+..+
T Consensus 241 ~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 241 IDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 1133445668888888888888876532 222 22224667888888888888888876643221 13455666667
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008249 446 ETRGGSIFDAFSLKKEMLLDGI-----------FPD---VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTE 511 (572)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 511 (572)
+...|++++|..+++.+..... .|+ ...+..+...+...|++++|+.+++++... .+.+...+..
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~ 398 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRID 398 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHH
Confidence 7888888888888888876421 123 234556777778888888888888888775 3556677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 512 LIKGHCARGNMKEAEEVFAKIQTLGLAID-HIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 512 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
++..+...|++++|++.++++.+. .|+ ...+...+..+...|++++|..+++++++.+
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 888888888888888888888876 454 4455566667788888888888888887654
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=1.6e-16 Score=166.49 Aligned_cols=433 Identities=12% Similarity=0.038 Sum_probs=320.4
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhCCCCCCh--hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008249 124 VIRDLCLGGKIGTALWLRRKMIQKGTVPDV--LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRV 201 (572)
Q Consensus 124 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 201 (572)
-+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.....+ ........+...+...
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n-~~~~~llalA~ly~~~ 115 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMN-ISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHc
Confidence 3444788999999999999999873 443 234 888889999999999999999973222 2333444446688889
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 008249 202 NELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQAL 281 (572)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 281 (572)
|++++|+++|+++.+.... ++..+..++..+...++.++|++.++++....+ +...+..++..+...++..+|+
T Consensus 116 gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-----~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDP-----TVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-----chHHHHHHHHHHHhcchHHHHH
Confidence 9999999999999987433 567777888899999999999999999988663 4444555555555567776799
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHH------HHHHHHH---H--HcCC---H
Q 008249 282 ALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITY------NTLLNCL---C--KQGK---L 347 (572)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~------~~ll~~~---~--~~g~---~ 347 (572)
+.++++.+.. +.+...+..+...+.+.|-...|.++..+-... +.+..... ...++.- . ...+ .
T Consensus 190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 9999999986 557788888999999999999988776652211 11111100 1111100 0 1122 2
Q ss_pred HHHHHHHHHHHhC-CCCCCH-hh----HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008249 348 DEASHFYGVLSKT-GVAPDQ-IS----YKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAF 421 (572)
Q Consensus 348 ~~A~~~~~~~~~~-~~~~~~-~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 421 (572)
+.|+.-++.+... +..|.. .. ..-.+-++...|++.++++.++.+...+.+....+-..+.++|...+++++|.
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 3455555555442 111322 22 22344567789999999999999998886656668889999999999999999
Q ss_pred HHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------CCC-HHHHHHHHHHHH
Q 008249 422 SIRDLMLSFG-----VSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGI-------------FPD-VFTYNLLIGASC 482 (572)
Q Consensus 422 ~~~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-------------~p~-~~~~~~li~~~~ 482 (572)
.+++.+.... .+++......|.-+|...+++++|..+++.+.+... .|| ...+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 9999986643 123444467889999999999999999999987421 123 223445677788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHH
Q 008249 483 NLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID-HIPFRILKKRYRRMKESDKAR 561 (572)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~ 561 (572)
..|++.+|++.++++.... |-|......+...+...|.+.+|++.++.+... .|+ ..+....+.++...|++++|.
T Consensus 428 ~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999998763 778899999999999999999999999877776 554 456678888899999999999
Q ss_pred HHHHHHHhcC
Q 008249 562 DIHQKWLLRN 571 (572)
Q Consensus 562 ~~~~~~l~~~ 571 (572)
.+.++.++..
T Consensus 505 ~~~~~l~~~~ 514 (822)
T PRK14574 505 LLTDDVISRS 514 (822)
T ss_pred HHHHHHHhhC
Confidence 9998886654
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=4.3e-16 Score=166.79 Aligned_cols=436 Identities=11% Similarity=-0.007 Sum_probs=309.4
Q ss_pred cCHHhHHHH-HHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHH-cCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 008249 116 TDYRRHVAV-IRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCK-IGDLEKADHVIREMSEMRPSPNCATYNA 193 (572)
Q Consensus 116 ~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 193 (572)
|+..+.... .+.|.+.|++++|+.++.++.+.+ +.+......|..+|.. .++ +.+..+++. ..+.+...+..
T Consensus 179 ~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~a 252 (987)
T PRK09782 179 PEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRIT 252 (987)
T ss_pred CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHH
Confidence 344444444 888999999999999999999986 4455667777778887 466 777777553 23357788889
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCC-CCHhHHHH------------------------------HHHHHHhCCChhHH
Q 008249 194 FITGYCRVNELDKALHLFSTMANNGIR-PNRVTHNI------------------------------LVHALCKKGLLGDA 242 (572)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~------------------------------ll~~~~~~g~~~~a 242 (572)
+...|.+.|+.++|.++++++...-.. |...++.. ++..+.+.++++.+
T Consensus 253 la~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (987)
T PRK09782 253 YATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAA 332 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999999987653211 33222221 13444555555544
Q ss_pred HHHHH-----------------------------HHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--C
Q 008249 243 VKFLG-----------------------------EVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK--N 291 (572)
Q Consensus 243 ~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 291 (572)
+++.. .+.+..+ .+.....-+.-...+.|+.++|.++|+..... +
T Consensus 333 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~----~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~ 408 (987)
T PRK09782 333 QKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEP----ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD 408 (987)
T ss_pred HHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc
Confidence 44421 1111111 23333333444456788889999999888762 1
Q ss_pred CCCCHHHHHHHHHHHHhCCC---HHHHHHH----------------------HHHHHHC-CC-CC--CHhHHHHHHHHHH
Q 008249 292 IQTDIVAYNVLINGFCLNGD---ISSAFAY----------------------FCQMLKR-GF-LP--DVITYNTLLNCLC 342 (572)
Q Consensus 292 ~~~~~~~~~~li~~~~~~g~---~~~a~~~----------------------~~~m~~~-g~-~p--~~~~~~~ll~~~~ 342 (572)
...+....+-++..|.+.+. ..++..+ +...... +. ++ +...|..+..++.
T Consensus 409 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~ 488 (987)
T PRK09782 409 ARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYR 488 (987)
T ss_pred cccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHH
Confidence 23344455577777777765 3333333 1111111 11 23 5666777777776
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008249 343 KQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFS 422 (572)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 422 (572)
. ++.++|...+...... .|+......+...+...|++++|...++++... .|+...+..+..++.+.|+.++|..
T Consensus 489 ~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~ 563 (987)
T PRK09782 489 D-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDR 563 (987)
T ss_pred h-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHH
Confidence 6 7888899988777764 356554444555556899999999999998665 3344556677888899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008249 423 IRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGI 502 (572)
Q Consensus 423 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 502 (572)
.++...+..+. +...+..+.......|++++|...+++..+. .|+...|..+...+.+.|++++|+..+++..+..
T Consensus 564 ~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~- 639 (987)
T PRK09782 564 WLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE- 639 (987)
T ss_pred HHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 99999886532 3344444444555679999999999999985 5678889999999999999999999999999863
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 503 TPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 503 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
+.+...+..+..++...|+.++|++.+++..+.. +-+...+..+..++...|++++|...|++.++.+
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 5566788899999999999999999999999862 2356678899999999999999999999998765
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=2.9e-16 Score=168.06 Aligned_cols=425 Identities=13% Similarity=0.018 Sum_probs=261.9
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
+..++..|...|.+.|++++|+..+++..+.. |+-..|..++..+ +++++|..+++++.+..|. +..++..+..
T Consensus 77 n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~-n~~~~~~la~ 150 (987)
T PRK09782 77 NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTVEELLAQQKA-CDAVPTLRCR 150 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHHHHHHHhCCC-ChhHHHHHHH
Confidence 45677788888888888888888888887763 4333333333222 7777888888888776663 3444444444
Q ss_pred H--------HHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHH-HHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHH
Q 008249 197 G--------YCRVNELDKALHLFSTMANNGIRPNRVTHNIL-VHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTIL 267 (572)
Q Consensus 197 ~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 267 (572)
. |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|++++.++.+.++ .+......|
T Consensus 151 ~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p----l~~~~~~~L 222 (987)
T PRK09782 151 SEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT----LSAAERRQW 222 (987)
T ss_pred HhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC----CCHHHHHHH
Confidence 3 4444 44444444 3322233344444444 6777777777777777777777665 444445555
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHhHH-----------
Q 008249 268 MDSYFK-NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFL-PDVITY----------- 334 (572)
Q Consensus 268 ~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~----------- 334 (572)
...|.. .++ +++..+++. .++.++..+..+...|.+.|+.++|.++++++...-.. |...++
T Consensus 223 ~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~ 297 (987)
T PRK09782 223 FDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANP 297 (987)
T ss_pred HHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCch
Confidence 555555 244 555555332 11245555666666666666666666666554321100 100000
Q ss_pred --------------------------------------------------------------------------------
Q 008249 335 -------------------------------------------------------------------------------- 334 (572)
Q Consensus 335 -------------------------------------------------------------------------------- 334 (572)
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 377 (987)
T PRK09782 298 VQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLT 377 (987)
T ss_pred hhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHH
Confidence
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHhC-C-C------------------------------------------------
Q 008249 335 --NTLLNCLCKQGKLDEASHFYGVLSKT-G-V------------------------------------------------ 362 (572)
Q Consensus 335 --~~ll~~~~~~g~~~~A~~~~~~~~~~-~-~------------------------------------------------ 362 (572)
..+.-...+.|+.++|.++++..... + .
T Consensus 378 ~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 457 (987)
T PRK09782 378 RLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGI 457 (987)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhh
Confidence 00001122345555555555444331 0 0
Q ss_pred --------------CC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 363 --------------AP--DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDL 426 (572)
Q Consensus 363 --------------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 426 (572)
++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|++
T Consensus 458 ~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rk 534 (987)
T PRK09782 458 ADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQK 534 (987)
T ss_pred hhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 11 23333444444443 55666777666666543 3433333344455678889999888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008249 427 MLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD-VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPD 505 (572)
Q Consensus 427 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 505 (572)
+... +|+...+..+..++.+.|+.++|...++...+.+ |+ ...+..+.....+.|++++|...+++..+. .|+
T Consensus 535 a~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~ 608 (987)
T PRK09782 535 ISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APS 608 (987)
T ss_pred Hhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCC
Confidence 7654 3344455666777888899999999998888754 33 333333444445669999999999999874 577
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 506 IITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI-DHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 506 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
...|..+..++.+.|+.++|...+++..+. .| +...+..+...+...|+.++|++.+++.++.+
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 888999999999999999999999999987 44 55677788889999999999999999988765
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=4.9e-17 Score=170.70 Aligned_cols=405 Identities=11% Similarity=-0.052 Sum_probs=278.6
Q ss_pred CCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 008249 113 TLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYN 192 (572)
Q Consensus 113 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 192 (572)
...|+...|..+...|.+.|++++|+..++..++.. +.+...+..+..+|...|++++|+.-|..+...+...+.. ..
T Consensus 155 ~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~ 232 (615)
T TIGR00990 155 ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQ-SA 232 (615)
T ss_pred hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHH-HH
Confidence 356778889999999999999999999999999874 4467789999999999999999999888776554322222 22
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH-
Q 008249 193 AFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY- 271 (572)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 271 (572)
.++..+.. ..+........+.. +++...+..+...+ ..........-+.+...... .....+..+...+
T Consensus 233 ~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~ 302 (615)
T TIGR00990 233 QAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPAGLEDSNELDE----ETGNGQLQLGLKSP 302 (615)
T ss_pred HHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchhhhhccccccc----ccccchHHHHHHHH
Confidence 22222111 22223333333321 22222233232222 21112222222222211111 1111111111111
Q ss_pred --HhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCC
Q 008249 272 --FKNGDKFQALALWNDMFQKN--IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD-VITYNTLLNCLCKQGK 346 (572)
Q Consensus 272 --~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 346 (572)
...+++++|.+.|++..+.+ .+.....|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|+
T Consensus 303 e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~ 380 (615)
T TIGR00990 303 ESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGD 380 (615)
T ss_pred HhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCC
Confidence 23467889999999988764 2334567788888888899999999999988875 344 5577788888889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 347 LDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDL 426 (572)
Q Consensus 347 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 426 (572)
+++|...++.+.+.. +.+..+|..+...+...|++++|...|++..+..+. +...+..+...+.+.|++++|...++.
T Consensus 381 ~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~ 458 (615)
T TIGR00990 381 PDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRR 458 (615)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999888763 346778888888999999999999999999887644 667778888889999999999999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008249 427 MLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVF------TYNLLIGASCNLGHIHLALQLYDEMLRR 500 (572)
Q Consensus 427 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (572)
..+..+ .+...++.+...+...|++++|.+.|++........+.. .++.....+...|++++|..++++..+.
T Consensus 459 al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 459 CKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 877532 357788888899999999999999999988753221111 1122222334468999999999998875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 501 GITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 501 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
. +.+...+..++..+...|++++|.+.|+++.+.
T Consensus 538 ~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 538 D-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred C-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3 334467888999999999999999999998875
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=3.4e-17 Score=164.14 Aligned_cols=445 Identities=13% Similarity=0.057 Sum_probs=345.8
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCC--CChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTV--PDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYN 192 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 192 (572)
+.|+...+.|.+.|.-.|++..++.+...+...... .-...|-.+..+|-..|++++|...|.+.....+.-.+..+.
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 346777899999999999999999999998876321 233468889999999999999999999988866543356677
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCC----ChhHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q 008249 193 AFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKG----LLGDAVKFLGEVLADDDGKATSDVITSTILM 268 (572)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (572)
.+...+.+.|+.+.+...|+...... +-+..|...|...|...+ ..+.|..++.+.++..+ .|...|-.+.
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~----~d~~a~l~la 421 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP----VDSEAWLELA 421 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc----ccHHHHHHHH
Confidence 78899999999999999999998762 335667777777777664 56788888888888665 8899999988
Q ss_pred HHHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCH------hHHH
Q 008249 269 DSYFKNGDKFQALALWNDMF----QKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR---GFLPDV------ITYN 335 (572)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~------~~~~ 335 (572)
..+....-+.. +..|..+. ..+..+.+...|.+...+...|+++.|...|+..... ...+|. .+--
T Consensus 422 ql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 422 QLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 88766554444 77776654 4455688899999999999999999999999988765 122333 2333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008249 336 TLLNCLCKQGKLDEASHFYGVLSKTGVAPDQ-ISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRC 414 (572)
Q Consensus 336 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 414 (572)
.+...+-..++.+.|.+.|..+.+. .|.- ..|-.+...-...+...+|...+.+....+-. ++..++.+...+.+.
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k 577 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKK 577 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhh
Confidence 4556666778999999999999885 3443 33444443333457888999999999876543 777888888899999
Q ss_pred CCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008249 415 GDLSNAFSIRDLMLSF-GVSSNVFTFNALILAETR------------GGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGAS 481 (572)
Q Consensus 415 g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 481 (572)
..+..|..-|+...+. ...+|.++.-.|.+.|.. .+..++|+++|.+.++..+. |...-|.+.-.+
T Consensus 578 ~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVL 656 (1018)
T KOG2002|consen 578 SEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVL 656 (1018)
T ss_pred hhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhh
Confidence 9999998877776553 223566666666665432 24578899999999887544 788888888899
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHHHH
Q 008249 482 CNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL-GLAIDHIPFRILKKRYRRMKESDKA 560 (572)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A 560 (572)
+..|++.+|..+|.+..+.. ..+..+|..+..+|..+|++..|+++|+...+. +..-++.+...|.+++.+.|.+.+|
T Consensus 657 A~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 657 AEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred hhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999864 346678999999999999999999999998775 3334677888999999999999999
Q ss_pred HHHHHHHHhc
Q 008249 561 RDIHQKWLLR 570 (572)
Q Consensus 561 ~~~~~~~l~~ 570 (572)
.+.....+..
T Consensus 736 k~~ll~a~~~ 745 (1018)
T KOG2002|consen 736 KEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHh
Confidence 9988877543
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=4.6e-15 Score=155.72 Aligned_cols=412 Identities=11% Similarity=-0.027 Sum_probs=309.3
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008249 123 AVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN 202 (572)
Q Consensus 123 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 202 (572)
.++..+...|+.++|+..+++.... .+........+...+...|++++|+++++++.+..|. +...+..++..+...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcC
Confidence 8888888999999999999998832 1222333344466888899999999999999998874 5777788899999999
Q ss_pred CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 008249 203 ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALA 282 (572)
Q Consensus 203 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 282 (572)
+.++|++.++++... .|+...+..++..+...++..+|++.++++++..+ .+...+..+...+.+.|-...|++
T Consensus 151 q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P----~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 151 RGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP----TSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred CHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCcHHHHH
Confidence 999999999999875 56666665555555556777679999999999876 788899999999999999999988
Q ss_pred HHHHHHhCCCCCCHHHH------HHHHHHH-----HhCCC---HHHHHHHHHHHHHC-CCCCCH-hHH----HHHHHHHH
Q 008249 283 LWNDMFQKNIQTDIVAY------NVLINGF-----CLNGD---ISSAFAYFCQMLKR-GFLPDV-ITY----NTLLNCLC 342 (572)
Q Consensus 283 ~~~~~~~~~~~~~~~~~------~~li~~~-----~~~g~---~~~a~~~~~~m~~~-g~~p~~-~~~----~~ll~~~~ 342 (572)
+..+-.+.- .+...-+ ..+++.- ....+ .+.|+.-++.+... +..|.. ..| .-.+-++.
T Consensus 225 l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 225 LAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 776543221 1111001 1111110 01122 34455666665542 222322 222 23455778
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCH
Q 008249 343 KQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSV-----VPEPHIWNVIIDGYGRCGDL 417 (572)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~ 417 (572)
..|++.++.+.++.+...+.+....+-..+.++|...+++++|..++..+..... .++......|.-+|...+++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence 8999999999999999888665566888999999999999999999999976542 22344457889999999999
Q ss_pred HHHHHHHHHHHhCCC-------------CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008249 418 SNAFSIRDLMLSFGV-------------SSNVF-TFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN 483 (572)
Q Consensus 418 ~~A~~~~~~~~~~~~-------------~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 483 (572)
++|..+++.+.+..+ .||-. .+..++..+...|++.+|++.++++....+. |......+.+.+..
T Consensus 384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~ 462 (822)
T PRK14574 384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLA 462 (822)
T ss_pred HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 999999999987322 12322 3455667788999999999999999886443 78889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHH
Q 008249 484 LGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRIL 547 (572)
Q Consensus 484 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 547 (572)
.|.+.+|...++..... -+-+..+....+.++...|++++|..+.+.+.+. .|+......|
T Consensus 463 Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l 523 (822)
T PRK14574 463 RDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQEL 523 (822)
T ss_pred cCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHH
Confidence 99999999999877765 2445677788899999999999999999999886 5665544443
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=7.7e-15 Score=134.35 Aligned_cols=411 Identities=15% Similarity=0.173 Sum_probs=296.2
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC--ChhHH-HHHHHHHhhCC----------
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIG--DLEKA-DHVIREMSEMR---------- 183 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A-~~~~~~~~~~~---------- 183 (572)
.+++=|.|+. ...+|.+.++.-+|+.|.+.|++.++..-..|+...+-.+ ++.-| ++.|-.|...|
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 4556777777 4566899999999999999998888887777666544322 22111 12222222211
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 008249 184 ---------PSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 184 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
.+.+..+|..+|.++|+--..+.|.+++++-.....+.+..+||.+|.+-.-. ...+++.+|++...
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhc
Confidence 12466789999999999999999999999998877888999999998765433 23788889988755
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHC----
Q 008249 255 GKATSDVITSTILMDSYFKNGDKFQ----ALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISS-AFAYFCQMLKR---- 325 (572)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~---- 325 (572)
. ||..|+|+++.+..+.|+++. |++++.+|++.|+.|...+|..+|..+++.++..+ +..++.+++..
T Consensus 270 -~--Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 270 -T--PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred -C--CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 5 999999999999999998765 55678889999999999999999999999887754 55555555532
Q ss_pred CCCC----CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008249 326 GFLP----DVITYNTLLNCLCKQGKLDEASHFYGVLSKTG----VAPD---QISYKTIIQGLCIHGDIVKAREFLLSMLE 394 (572)
Q Consensus 326 g~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 394 (572)
.++| |...|...+..|.+..+.+.|.++...+.... +.|+ ..-|..+....|+....+.-...++.|.-
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222 44556777888889999999988877665431 2333 23466778888889999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CH---H-----H-----HHHHH-
Q 008249 395 KSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGG-SI---F-----D-----AFSLK- 459 (572)
Q Consensus 395 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g-~~---~-----~-----a~~~~- 459 (572)
.-..|+..+...++++..-.++++-.-++|..+...|...+...-..++..+++.. .. + . |..++
T Consensus 427 ~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e 506 (625)
T KOG4422|consen 427 SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKE 506 (625)
T ss_pred ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999988876555555555555555443 11 0 0 11111
Q ss_pred ------HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 460 ------KEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGI----TPDIITYTELIKGHCARGNMKEAEEVF 529 (572)
Q Consensus 460 ------~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~l~~~~~~~g~~~~A~~~~ 529 (572)
.+|.+ ........+...-.+.+.|+.++|.+++.-+.+++- .|......-++..-.+.++...|..++
T Consensus 507 ~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~l 584 (625)
T KOG4422|consen 507 AYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVL 584 (625)
T ss_pred HHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 12222 233455667777778899999999999998865432 233333345566667778888999999
Q ss_pred HHHHHcCC
Q 008249 530 AKIQTLGL 537 (572)
Q Consensus 530 ~~m~~~g~ 537 (572)
+-|...+.
T Consensus 585 Q~a~~~n~ 592 (625)
T KOG4422|consen 585 QLASAFNL 592 (625)
T ss_pred HHHHHcCc
Confidence 98877643
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.7e-15 Score=150.73 Aligned_cols=441 Identities=16% Similarity=0.116 Sum_probs=327.2
Q ss_pred HHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008249 118 YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (572)
Q Consensus 118 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (572)
..+|..+.++|-..|+++.|...|-...+..-..-+..+-.|.+.|.+.|+++.+...|+.+.+..| .+..+...+...
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~L 385 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhH
Confidence 3468889999999999999999998888763111234456688999999999999999999999776 466777777777
Q ss_pred HHhcC----CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHH----hCCCCCCCccHHHHHHHHH
Q 008249 198 YCRVN----ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVL----ADDDGKATSDVITSTILMD 269 (572)
Q Consensus 198 ~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~l~~ 269 (572)
|...+ ..+.|..++.+....- +.|...|..+...+-...-+ .++..+..+. ..+. . .-+...|.+..
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~-~--ip~E~LNNvas 460 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGK-Q--IPPEVLNNVAS 460 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCC-C--CCHHHHHhHHH
Confidence 77765 5577777777777653 44777888887776654444 4477766554 3333 3 56778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHH
Q 008249 270 SYFKNGDKFQALALWNDMFQK---NIQTDI------VAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD-VITYNTLLN 339 (572)
Q Consensus 270 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~ 339 (572)
.+...|+++.|...|...... ...++. .+-..+...+-..++.+.|.+.|..+.+. -|. +..|..++.
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhH
Confidence 999999999999999988765 122232 23444666777788999999999999886 344 334444443
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHh-----
Q 008249 340 CLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSV-VPEPHIWNVIIDGYGR----- 413 (572)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~----- 413 (572)
.....+...+|...++...... ..++..++.+...+.+...+..|.+-|..+.+.-. .+|+.+.-.|.+.|.+
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 3444577889999999888753 44666777777788899999999987777766532 2466666666665543
Q ss_pred -------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008249 414 -------CGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGH 486 (572)
Q Consensus 414 -------~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 486 (572)
.+..++|+++|.+..+..+. |...-|.+.-.++..|++.+|..+|.+..+... -+..+|-.+.++|..+|+
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHH
Confidence 24578899999998887554 788888899999999999999999999998743 255678899999999999
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH---------------
Q 008249 487 IHLALQLYDEMLRR-GITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKR--------------- 550 (572)
Q Consensus 487 ~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~--------------- 550 (572)
+..|+++|+...+. +-..+..+...|.+++.+.|.+.+|.+.+..+......-..+.|+..+-.
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~ 775 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTL 775 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccH
Confidence 99999999987754 44457788999999999999999999999988876322223344432221
Q ss_pred ---HHhcCCHHHHHHHHHHHHh
Q 008249 551 ---YRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 551 ---~~~~g~~~~A~~~~~~~l~ 569 (572)
....+..+.|.++|.++-+
T Consensus 776 eev~~a~~~le~a~r~F~~ls~ 797 (1018)
T KOG2002|consen 776 EEVLEAVKELEEARRLFTELSK 797 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 2233446667777777654
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=2.5e-14 Score=131.01 Aligned_cols=366 Identities=14% Similarity=0.147 Sum_probs=261.6
Q ss_pred CCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 008249 114 LETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNA 193 (572)
Q Consensus 114 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 193 (572)
.+....+|.++|.++|+--+.+.|..++.+......+.+..+||.+|.+-.-... .+++.+|......||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 3556789999999999999999999999999888778899999999987654332 677889999889999999999
Q ss_pred HHHHHHhcCCHh----HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhH-HHHHHHHHHhC--C---CCCCCccHHH
Q 008249 194 FITGYCRVNELD----KALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGD-AVKFLGEVLAD--D---DGKATSDVIT 263 (572)
Q Consensus 194 li~~~~~~g~~~----~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~--~---~~~~~~~~~~ 263 (572)
++++..+.|+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... | ....+.+...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 999999999876 456788899999999999999999999998887754 44444444321 1 1133456777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 008249 264 STILMDSYFKNGDKFQALALWNDMFQKN----IQTD---IVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNT 336 (572)
Q Consensus 264 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 336 (572)
+..-++.+.+..+.+-|.++-.-+.... +.|+ ..-|..+....|+....+..+.+|+.|+-+-+-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 8888888889999988888776655431 2232 23455677778888899999999999998878889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C
Q 008249 337 LLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRC-G 415 (572)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 415 (572)
++++..-.|.++-.-+++.++...|....... -.+++..+......|+...-..+-.+..+. -
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l----------------~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDL----------------REEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH----------------HHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 99998888999988888888887664322222 233444444444444322222222222111 1
Q ss_pred CHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHH
Q 008249 416 DLSN-AFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDG----IFPDVFTYNLLIGASCNLGHIHLA 490 (572)
Q Consensus 416 ~~~~-A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~~~~A 490 (572)
++.+ ....-.++.+.. ......+.++..+.+.|..++|.+++..+.+.+ ..|......-+++.-.+.+.+..|
T Consensus 503 d~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 1222 222233444443 345567777778899999999999999886543 223344444666777788888899
Q ss_pred HHHHHHHHHCC
Q 008249 491 LQLYDEMLRRG 501 (572)
Q Consensus 491 ~~~~~~m~~~g 501 (572)
...++-|...+
T Consensus 581 ~~~lQ~a~~~n 591 (625)
T KOG4422|consen 581 IEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHcC
Confidence 99998887654
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.75 E-value=4e-12 Score=122.81 Aligned_cols=438 Identities=13% Similarity=0.026 Sum_probs=288.0
Q ss_pred CCcCHHhHHHHHHHHHhCCChhhHHHHHHHH----HhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCC--C
Q 008249 114 LETDYRRHVAVIRDLCLGGKIGTALWLRRKM----IQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSP--N 187 (572)
Q Consensus 114 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~ 187 (572)
++.+..+|.+-...=-.+|+.+...++.++- ...|+..+...|..=...+-+.|..-.+..+.......|.+- -
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 3456666766655555667776666666553 344666677777666666666677766666666666655532 2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHH
Q 008249 188 CATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTIL 267 (572)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 267 (572)
..+|+.-...|.+.+.++-|..+|...++. ++.+...|......--..|..+....+|++++..-+ .....|...
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p----kae~lwlM~ 590 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP----KAEILWLMY 590 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC----cchhHHHHH
Confidence 346667777777777777777777777664 233455566555555566777777777777776433 566667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 008249 268 MDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKL 347 (572)
Q Consensus 268 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 347 (572)
...+-..|++..|..++....+.. +-+...|-.-+.....+..++.|..+|.+.... .|+...|..-+..---.+..
T Consensus 591 ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhH
Confidence 777777777777777777777765 336667777777777777777777777766553 45566665555555556777
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 348 DEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLM 427 (572)
Q Consensus 348 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 427 (572)
++|.+++++..+. ++.-...|-.+.+.+-+.++++.|.+.|..-.+. ++-.+..|-.|...--+.|.+-+|..++++.
T Consensus 668 eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 668 EEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 7777777777764 3333456666666777777777777776665544 2335556666766667777777788787777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 008249 428 LSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDII 507 (572)
Q Consensus 428 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 507 (572)
.-.++. +...|-..|..-.+.|..+.|..+..+..+. +.-+...|.--|....+.++-..+...+.+ ..-|..
T Consensus 746 rlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dph 818 (913)
T KOG0495|consen 746 RLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPH 818 (913)
T ss_pred HhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCch
Confidence 766554 6777777777777778888777777776654 333555666666665555553333333222 345666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 508 TYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 508 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
....+...+....+++.|.+.|.+.++.+ +.+..+|.-+...+.+.|.-++-.+++.+...
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 66677777777788888888888888763 22345676677777788877777777776543
No 30
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.3e-12 Score=119.81 Aligned_cols=440 Identities=11% Similarity=0.070 Sum_probs=279.8
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
+...|-....-=-.++++..|..+|++.+... .-+...|...+..=.+..++..|..++++....-|..| ..|...+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHH
Confidence 44556555555556677778888888877754 34666677777777777788888888887777655433 34555555
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008249 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
.--..|++..|.++|++-.+ ..|+...|.+.++.-.+-+.++.|..+++..+--. |++.+|-.....-.+.|.
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-----P~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-----PKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-----ccHHHHHHHHHHHHhcCc
Confidence 55567888888888877765 47788888888888778888888888887776533 777777777777778888
Q ss_pred HHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHHcCCHHHHHH
Q 008249 277 KFQALALWNDMFQK-N-IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD--VITYNTLLNCLCKQGKLDEASH 352 (572)
Q Consensus 277 ~~~A~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~A~~ 352 (572)
...|..+|+...+. | -..+...+.+...--..+..++.|.-+|+-..+. ++.+ ...|......=-+-|+......
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 88888888777654 1 0111222333333333455667777777666654 2222 2233333333233444332221
Q ss_pred --------HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHH--------HHHHHhcC
Q 008249 353 --------FYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEP-HIWNVI--------IDGYGRCG 415 (572)
Q Consensus 353 --------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l--------i~~~~~~g 415 (572)
-++.+.+. -+-|-.+|-..+......|+.+...+++++.+..-++... ..|... +-.-....
T Consensus 302 ~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22333333 2446667777777777778888888888887765322111 112111 11123456
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008249 416 DLSNAFSIRDLMLSFGVSSNVFTFNALILAE----TRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLAL 491 (572)
Q Consensus 416 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~----~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 491 (572)
+.+.+.++++...+. ++....||..+--.| .++.++..|.+++...+ |..|-..+|...|..-.+.++++.+.
T Consensus 381 d~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 381 DVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred hHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 777788888777763 333455655554443 35567777777777665 45677777877888777888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008249 492 QLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGL-AIDHIPFRILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 492 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
.++++.++.+ |-|..+|......-...|+.+.|..+|+-+..... ......|.+.|+-=...|.+++|+.+++++|+.
T Consensus 458 kLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 458 KLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 8888888764 45667777777777777888888888887776421 112335666666667788888888888888765
Q ss_pred C
Q 008249 571 N 571 (572)
Q Consensus 571 ~ 571 (572)
.
T Consensus 537 t 537 (677)
T KOG1915|consen 537 T 537 (677)
T ss_pred c
Confidence 4
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.74 E-value=1.7e-12 Score=125.35 Aligned_cols=438 Identities=14% Similarity=0.048 Sum_probs=239.2
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
+.++..|-..+ ...+.++|+.++.+..+- ++.+...| -+|.+..-++.|..++.+..+.-| .+...|.+-
T Consensus 377 P~sv~LWKaAV----elE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~ip-td~~IWita 446 (913)
T KOG0495|consen 377 PRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREIIP-TDREIWITA 446 (913)
T ss_pred CchHHHHHHHH----hccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhhCC-CChhHHHHH
Confidence 34454554333 334555677777766654 22233333 344455566667777777666544 455666665
Q ss_pred HHHHHhcCCHhHHHHHHHHH----HHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Q 008249 195 ITGYCRVNELDKALHLFSTM----ANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDS 270 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (572)
...--.+|+.+...+++++- ...|+..+...|..=...|-..|.+-.+..+....+..|. .......+|+.-...
T Consensus 447 a~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigv-Eeed~~~tw~~da~~ 525 (913)
T KOG0495|consen 447 AKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGV-EEEDRKSTWLDDAQS 525 (913)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhcc-ccchhHhHHhhhHHH
Confidence 55555666666666665543 3455666666666666666666666666666666665554 222344566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHH
Q 008249 271 YFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEA 350 (572)
Q Consensus 271 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 350 (572)
+.+.+.++-|..+|....+-- +.+...|......--..|..++...+|.+.... ++-....|......+-..|++..|
T Consensus 526 ~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred HHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHH
Confidence 666666666666666655442 334444554444444455566666666665554 222333444444455555666666
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 351 SHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF 430 (572)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 430 (572)
..++....+.. +.+...|-..+........++.|..+|.+.... .|+...|..-+...--.++.++|.+++++..+.
T Consensus 604 r~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 604 RVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 66666555542 224455555555555556666666666655543 234444444444444455556666666555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008249 431 GVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD-VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITY 509 (572)
Q Consensus 431 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 509 (572)
++.-...|..+.+.+-+.++++.|.+.|..-.+. -|+ ...|-.|.+.--+.|.+-.|..++++..-++ +-+...|
T Consensus 681 -fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lw 756 (913)
T KOG0495|consen 681 -FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLW 756 (913)
T ss_pred -CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhH
Confidence 1112334445555555555555555555433332 222 3344444444445555555555555555442 3444555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc-----------------------------CCCCChHHHHHHHHHHHhcCCHHHH
Q 008249 510 TELIKGHCARGNMKEAEEVFAKIQTL-----------------------------GLAIDHIPFRILKKRYRRMKESDKA 560 (572)
Q Consensus 510 ~~l~~~~~~~g~~~~A~~~~~~m~~~-----------------------------g~~p~~~~~~~l~~~~~~~g~~~~A 560 (572)
...|+.-.+.|+.+.|..+..++.+. ...-|+.....+...+....++++|
T Consensus 757 le~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~ka 836 (913)
T KOG0495|consen 757 LESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKA 836 (913)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHH
Confidence 55555555555555555444443321 0233555566777788888999999
Q ss_pred HHHHHHHHhcCC
Q 008249 561 RDIHQKWLLRNK 572 (572)
Q Consensus 561 ~~~~~~~l~~~~ 572 (572)
++.|++.++.++
T Consensus 837 r~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 837 REWFERAVKKDP 848 (913)
T ss_pred HHHHHHHHccCC
Confidence 999999987663
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=2.2e-12 Score=129.37 Aligned_cols=341 Identities=15% Similarity=0.153 Sum_probs=188.3
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
.|.+...-...+.+.-.|++++|..++.+.++.. +.+...|..|...|-..|+.+++...+-......|+ |...|..+
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~l 213 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRL 213 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHH
Confidence 3334444444444445577777777777766653 445666777777777777777776666665555553 44666666
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHH----HHHHHH
Q 008249 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITS----TILMDS 270 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~l~~~ 270 (572)
.....+.|++++|.-.|.+.++.. +++...+-.-...|-+.|+...|..-|.++....+ . .+..-. -..++.
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~--~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-P--VDIERIEDLIRRVAHY 289 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-c--hhHHHHHHHHHHHHHH
Confidence 666666777777777777766653 23433444445556666777777777766666543 1 222222 223444
Q ss_pred HHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC---------------------
Q 008249 271 YFKNGDKFQALALWNDMFQK-NIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFL--------------------- 328 (572)
Q Consensus 271 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--------------------- 328 (572)
+...++-+.|.+.++..... +-..+...++.++..+.+...++.+......+......
T Consensus 290 ~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 290 FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred HHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 55555556666666665542 11334455666666666666666666666555541111
Q ss_pred ------CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008249 329 ------PDVITYNTLLNCLCKQGKLDEASHFYGVLSKTG--VAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPE 400 (572)
Q Consensus 329 ------p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 400 (572)
++...+ .+.-++.+....+....+........ +.-+...|.-+..+|...|++.+|+.+|..+......-+
T Consensus 370 ~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 370 VGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred CCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 111110 11222333333333333444444433 222345566666666666666666666666665544445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 401 PHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEML 463 (572)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 463 (572)
...|-.+..+|...|.++.|.+.|+......+. +...-..|...+-+.|+.++|.+.+..+.
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 556666666666666666666666666554321 33344445555666666666666666543
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=6.9e-14 Score=129.01 Aligned_cols=208 Identities=15% Similarity=0.152 Sum_probs=161.9
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008249 342 CKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAF 421 (572)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 421 (572)
...|++++|.+.+++.......-....|| +.-.+-..|+.++|++.|-++...- ..+..+...+.+.|....+...|+
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHH
Confidence 35688999999998888763222222333 2234567889999999988876432 226677778888899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008249 422 SIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRG 501 (572)
Q Consensus 422 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 501 (572)
+++.+.... ++.|....+.|...|-+.|+-.+|.+++-+-.+. +.-|..+...|...|....-+++|+..|++..-
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal-- 654 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-- 654 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence 998877664 4558889999999999999999998877655443 445788888999999999999999999998765
Q ss_pred CCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 008249 502 ITPDIITYTELIKGH-CARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKE 556 (572)
Q Consensus 502 ~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 556 (572)
+.|+..-|..++..| .+.|++.+|.++++...+. ++-|.....-|++.+...|.
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 689999998877654 5789999999999999886 56688888888888877773
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=4.2e-14 Score=130.41 Aligned_cols=382 Identities=19% Similarity=0.164 Sum_probs=250.3
Q ss_pred HHhCCChhhHHHHHHHHHhCCCCCC------hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008249 128 LCLGGKIGTALWLRRKMIQKGTVPD------VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRV 201 (572)
Q Consensus 128 ~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 201 (572)
+.+.+.+.+|+++++..+.. .|+ ....+.+...+.+.|++++|+..|+...+.. ||..+-..|+-++...
T Consensus 247 ~~kkr~fskaikfyrmaldq--vpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i 322 (840)
T KOG2003|consen 247 HFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAI 322 (840)
T ss_pred eeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheec
Confidence 34444555555555554443 121 1233444455677888888888888887754 5665555555566677
Q ss_pred CCHhHHHHHHHHHHHCCCCC------------CHhHHHHHH-----HHHHhCCChhHHHHHHHHHHhC-CCC--------
Q 008249 202 NELDKALHLFSTMANNGIRP------------NRVTHNILV-----HALCKKGLLGDAVKFLGEVLAD-DDG-------- 255 (572)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~p------------~~~~~~~ll-----~~~~~~g~~~~a~~~~~~~~~~-~~~-------- 255 (572)
|+-++..+.|.+|......| +....+.-+ .-.-+.+ -..|++..-...+. .+.
T Consensus 323 ~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~g 401 (840)
T KOG2003|consen 323 GDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFAAG 401 (840)
T ss_pred CcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhh-hhhHHHHHHHHHHHhccccccchhcc
Confidence 88888888888887543222 222222211 1111111 11122211111110 000
Q ss_pred ------------CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---------------------
Q 008249 256 ------------KATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVL--------------------- 302 (572)
Q Consensus 256 ------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------------- 302 (572)
..+.-...-..-..-|.++|+++.|+++++-..+.+-+.-...-+.|
T Consensus 402 ~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~ 481 (840)
T KOG2003|consen 402 CDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADI 481 (840)
T ss_pred cHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHH
Confidence 00011111122355678888888888888776554322111111111
Q ss_pred ---------------HHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHh
Q 008249 303 ---------------INGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQI 367 (572)
Q Consensus 303 ---------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 367 (572)
.+....+|++++|.+.|++.....-.-....|| +.-.+-..|+.++|++.|-.+... +..+..
T Consensus 482 aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~e 559 (840)
T KOG2003|consen 482 ALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAE 559 (840)
T ss_pred HhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHH
Confidence 111224578899999998887653221222233 223467789999999998877653 334778
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008249 368 SYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAET 447 (572)
Q Consensus 368 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 447 (572)
+...+...|-...+..+|++++.+.... ++.|+...+.|...|-+.|+-..|++.+-.--+. ++-+..+...|...|.
T Consensus 560 vl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHH
Confidence 8888899999999999999999888765 4458899999999999999999999887665554 4458888889999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008249 448 RGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASC-NLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGN 521 (572)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 521 (572)
...-+++++.+|++..- +.|+..-|..++..|. +.|++++|.++|+...++ ++.|.....-|++.+...|-
T Consensus 638 dtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99999999999998765 6899999998887765 689999999999999876 78889998889988877773
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=2.8e-12 Score=128.63 Aligned_cols=394 Identities=16% Similarity=0.106 Sum_probs=252.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCC
Q 008249 158 YLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKG 237 (572)
Q Consensus 158 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 237 (572)
...+.+.-.|+.++|.+++.++.+..| .+...|..|...|-..|+.+++...+-...... +-|...|..+.....+.|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcc
Confidence 333444445999999999999988877 577888899999999999998888776665543 336677888888888889
Q ss_pred ChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhCCCHH
Q 008249 238 LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYN----VLINGFCLNGDIS 313 (572)
Q Consensus 238 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~ 313 (572)
.+++|.-.|.++++..+ ++...+---+..|-+.|+...|.+-|.++.....+.|..-.. ..++.+...++-+
T Consensus 222 ~i~qA~~cy~rAI~~~p----~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANP----SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred cHHHHHHHHHHHHhcCC----cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999998776 677777777788888899999999998888774222222222 2345566666667
Q ss_pred HHHHHHHHHHHC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 008249 314 SAFAYFCQMLKR-GFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSM 392 (572)
Q Consensus 314 ~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 392 (572)
.|.+.++..... +-..+...++.++..+.+...++.|......+......+|..-+-+-= .++ .-+.-.
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~-----~~~-----~~~~~~ 367 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE-----RRR-----EEPNAL 367 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh-----hcc-----cccccc
Confidence 777777776652 223345566777777788888888877776666544444443331100 000 000000
Q ss_pred Hh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008249 393 LE--KSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFG--VSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIF 468 (572)
Q Consensus 393 ~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 468 (572)
.. .+..++... -.+.-++......+....+.....+.. +.-+...|.-+..+|...|++.+|++++..+......
T Consensus 368 ~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 368 CEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred ccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 00 112222222 122223334444444444444444444 3334566777777888888888888888877766444
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HcCCCCC
Q 008249 469 PDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQ--------TLGLAID 540 (572)
Q Consensus 469 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--------~~g~~p~ 540 (572)
-+...|-.+..+|...|.+++|.+.|+..+... +.+...-.+|...+-+.|+.++|.+.++.+. ..+..|+
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e 525 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPE 525 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHH
Confidence 456677777788888888888888888777642 3344555667777777888888888777743 2234444
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 541 HIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 541 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
..........+...|+.++-...-.+|++
T Consensus 526 ~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 526 RRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 54455566667777777776655555543
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=4.5e-11 Score=111.46 Aligned_cols=438 Identities=12% Similarity=0.072 Sum_probs=327.5
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCh-hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDV-LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNA 193 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 193 (572)
..+...|...+..=.++.++..|..++++.... -|-+ ..|...+..=-..|++..|.++|++..+ .+|+..+|++
T Consensus 104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~s 179 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLS 179 (677)
T ss_pred cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHH
Confidence 356678888999999999999999999998875 3444 3445555555667999999999999987 5689999999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh
Q 008249 194 FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (572)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (572)
.|..-.+.+.++.|..+|++..- +.|+..+|.-....-.+.|++.-+..+|+.+++.-. ....+...+.+....-.+
T Consensus 180 fI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~-~d~~~e~lfvaFA~fEe~ 256 (677)
T KOG1915|consen 180 FIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG-DDEEAEILFVAFAEFEER 256 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 469999999999999999999999999998876432 111455677777777778
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHH--------HHHHHHCCCCCCHhHHHHHHHHHHH
Q 008249 274 NGDKFQALALWNDMFQKNIQTD--IVAYNVLINGFCLNGDISSAFAY--------FCQMLKRGFLPDVITYNTLLNCLCK 343 (572)
Q Consensus 274 ~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~--------~~~m~~~g~~p~~~~~~~ll~~~~~ 343 (572)
+..++.|.-+|+-..+.= +.+ ...|......--+-|+....... |+.+++. -+.|-.+|-..++.--.
T Consensus 257 qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~ 334 (677)
T KOG1915|consen 257 QKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEES 334 (677)
T ss_pred HHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHh
Confidence 889999999999888762 222 33444444433445554433332 2333333 24567777777888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHH--------HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--
Q 008249 344 QGKLDEASHFYGVLSKTGVAPDQ--ISYKTIIQGL--------CIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGY-- 411 (572)
Q Consensus 344 ~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~--------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-- 411 (572)
.|+.+...++|+..+.. ++|-. ..|...|-.. ....+++.+.++++..++. ++....|+..+--.|
T Consensus 335 ~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~ 412 (677)
T KOG1915|consen 335 VGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQ 412 (677)
T ss_pred cCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHH
Confidence 89999999999999886 45522 2232222211 2467899999999998884 444556665544444
Q ss_pred --HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008249 412 --GRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHL 489 (572)
Q Consensus 412 --~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (572)
.+..++..|.+++..... .-|-..+|...|..-.+.++++.+..++++.++.++. |..+|......-...|+.+.
T Consensus 413 feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdR 489 (677)
T KOG1915|consen 413 FEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDR 489 (677)
T ss_pred HHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHH
Confidence 467889999999887664 5678889999999989999999999999999997654 78888888888888999999
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-----hcC--------
Q 008249 490 ALQLYDEMLRRG-ITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYR-----RMK-------- 555 (572)
Q Consensus 490 A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-----~~g-------- 555 (572)
|..+|+-++... +......|.+.|..-...|.++.|..+++++++. .+...+|.+...--. ..|
T Consensus 490 aRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~ 567 (677)
T KOG1915|consen 490 ARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEI 567 (677)
T ss_pred HHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhc
Confidence 999999998742 2223466777888888899999999999999986 445556666554322 334
Q ss_pred ---CHHHHHHHHHHHH
Q 008249 556 ---ESDKARDIHQKWL 568 (572)
Q Consensus 556 ---~~~~A~~~~~~~l 568 (572)
....|+.+|+++.
T Consensus 568 ~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 568 TDENIKRARKIFERAN 583 (677)
T ss_pred chhHHHHHHHHHHHHH
Confidence 5667888888764
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=3.9e-13 Score=133.53 Aligned_cols=289 Identities=11% Similarity=-0.012 Sum_probs=174.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHHcCCHH
Q 008249 272 FKNGDKFQALALWNDMFQKNIQTD-IVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDV--ITYNTLLNCLCKQGKLD 348 (572)
Q Consensus 272 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~ 348 (572)
...|+++.|.+.+.+..+.. |+ ...+-.....+...|+++.|.+.+.+..+.. |+. .........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 34566666666666655542 33 2233334455666677777777776665542 332 22223355666677777
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHH
Q 008249 349 EASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWN-VIIDGY---GRCGDLSNAFSIR 424 (572)
Q Consensus 349 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~---~~~g~~~~A~~~~ 424 (572)
.|...++.+.+.. +-+..++..+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+++...+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 7777777766653 335556666667777777777777777777766543 222221 111111 2222222223344
Q ss_pred HHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 425 DLMLSFGV---SSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFT---YNLLIGASCNLGHIHLALQLYDEML 498 (572)
Q Consensus 425 ~~~~~~~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~ 498 (572)
..+.+..+ +.+...+..+...+...|+.++|.+.+++..+.. ||... .....-.....++.+.+.+.+++..
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 33333221 1266777777778888888888888888887753 33221 1112222234577788888888877
Q ss_pred HCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 499 RRGITPDI--ITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 499 ~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
+. .+-|. ....++.+.+.+.|++++|.+.|++.......|+...+..+...+.+.|+.++|.++|++.+.
T Consensus 327 k~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 327 KN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred Hh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65 23344 556688888888888888888888544444478888888888888888888888888888653
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=6.9e-13 Score=131.04 Aligned_cols=283 Identities=14% Similarity=0.031 Sum_probs=171.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHH--HHHHHHHHcCCHHHH
Q 008249 274 NGDKFQALALWNDMFQKNIQTDIVA-YNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYN--TLLNCLCKQGKLDEA 350 (572)
Q Consensus 274 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~A 350 (572)
.|+++.|.+.+....+.. +++.. |........+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666665555544431 12222 222233335666666666666666553 33432222 224556666777777
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHH
Q 008249 351 SHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPH-------IWNVIIDGYGRCGDLSNAFSI 423 (572)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~ 423 (572)
...++.+.+.. +-+......+...|.+.|++++|.+++..+.+.+..++.. .|..++.......+.+....+
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77776666653 3345666666666677777777777777766655442221 222223333333444555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008249 424 RDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGIT 503 (572)
Q Consensus 424 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 503 (572)
++.+.+. .+.+......+...+...|+.++|.+.+++..+. .||... .++.+.+..++++++++..+...+. .+
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~-~P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ-HG 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh-CC
Confidence 5554332 2236666777777778888888888888777764 334422 1233344557788888888877765 24
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 504 PDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 504 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
-|...+..+...+.+.|++++|.+.|+++.+. .|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566777788888888888888888888775 57777777788888888888888888877653
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=4.8e-12 Score=118.32 Aligned_cols=418 Identities=14% Similarity=0.057 Sum_probs=256.5
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008249 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD-VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYC 199 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 199 (572)
+-...+-+.++|++++|++.+...++. .|+ +.-|.....+|...|++++..+-..+.++..|. -+-.+..-.+++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 455667789999999999999999986 577 778888999999999999999988888886653 4556777778888
Q ss_pred hcCCHhHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHh-CCCCCCCccHHHHHHHHHHHHhcCCH
Q 008249 200 RVNELDKALHLFSTMANN-GIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLA-DDDGKATSDVITSTILMDSYFKNGDK 277 (572)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~ 277 (572)
..|++++|+.=..-.--. |+. |..+-..+=+.+-+ .|..-.++-.+ .++ ..-|+....++....+...-.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~-p~lPS~~fi~syf~sF~~~~~- 266 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRP-PVLPSATFIASYFGSFHADPK- 266 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCC-CCCCcHHHHHHHHhhcccccc-
Confidence 889988886443333211 221 22221111122211 22333333333 222 222444444444333321100
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--CC---CHHHHHHHHHHHHHC---CCCC---C------HhHHHHHHHH
Q 008249 278 FQALALWNDMFQKNIQTDIVAYNVLINGFCL--NG---DISSAFAYFCQMLKR---GFLP---D------VITYNTLLNC 340 (572)
Q Consensus 278 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g---~~~~a~~~~~~m~~~---g~~p---~------~~~~~~ll~~ 340 (572)
.....+.......+..++.. .+ .+..|...+.+-... .... | ..+.......
T Consensus 267 -----------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 267 -----------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred -----------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 00000011111111111110 11 222333222221110 0000 1 1111111222
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008249 341 LCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNA 420 (572)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 420 (572)
+.-.|+.-.|..-|+..++.... +...|-.+...|....+.++.++.|.+..+.++. ++.+|..-...+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 33457777888888888876433 2333777777788888888888888888887766 677777777778888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008249 421 FSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRR 500 (572)
Q Consensus 421 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (572)
..-|++..+..+. +...|-.+.-+..+.+++++++..|++.++. .+--+..|+.....+...+++++|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 8888888876443 5666777777777788888888888888875 3334677888888888888888888888888763
Q ss_pred CCCCC-------HHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 501 GITPD-------IIT--YTELIKGHCARGNMKEAEEVFAKIQTLGLAID-HIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 501 g~~p~-------~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
.|+ ... .-.++-. .-.+++..|..++.++.+. .|. ...|..|...-.+.|+.++|+++|++...
T Consensus 492 --E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 --EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred --ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333 221 1222222 2347888888888888876 343 34678888888888888888888887643
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=4.5e-11 Score=111.28 Aligned_cols=366 Identities=14% Similarity=0.052 Sum_probs=239.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHH
Q 008249 185 SPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITS 264 (572)
Q Consensus 185 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 264 (572)
..|...+......+-+.|....|...|...... .+-.-..|..|... ..+.+. ........+.. .....-
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~l---it~~e~----~~~l~~~l~~~--~h~M~~ 230 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSEL---ITDIEI----LSILVVGLPSD--MHWMKK 230 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHh---hchHHH----HHHHHhcCccc--chHHHH
Confidence 344444444445555677778888877776643 12222333333222 222222 22222222100 111122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHH
Q 008249 265 TILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGF--LPDVITYNTLLNCLC 342 (572)
Q Consensus 265 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~ 342 (572)
-.+..++-...+.++++.-.+.....|.+-+...-+....+.....++++|+.+|+++.+... --|..+|..++- .
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--V 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--H
Confidence 234455666667788888888888888766666556666666778889999999999887621 125667766653 3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008249 343 KQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFS 422 (572)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 422 (572)
+..+-.-+ ++-+-...--+--+.|...+.+.|.-.++.++|...|++.++.++. ....|+.+..-|....+...|.+
T Consensus 309 ~~~~skLs--~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 309 KNDKSKLS--YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HhhhHHHH--HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 33222211 1111111001223457777888888888999999999999888766 66778888888999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008249 423 IRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGI 502 (572)
Q Consensus 423 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 502 (572)
-++...+-.+. |-..|-.|.++|.-.+.+.=|+-+|++.....+ -|...|..|.++|.+.++.++|++.|.+....|
T Consensus 386 sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 99998886543 888899999999999999999999998887532 268889999999999999999999999988765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCChH--HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 503 TPDIITYTELIKGHCARGNMKEAEEVFAKIQTL----GLAIDHI--PFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 503 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
..+...+..|...|-+.++.++|...+++.++. |...+.. ...-|..-+.+.+++++|..+..+.+
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 446678888999999999999998888877652 3222211 11224445566777777766554443
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=1.9e-12 Score=127.99 Aligned_cols=282 Identities=11% Similarity=0.067 Sum_probs=133.2
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHH--HHHHHHHhCCChhHHH
Q 008249 166 IGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHN--ILVHALCKKGLLGDAV 243 (572)
Q Consensus 166 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a~ 243 (572)
.|+++.|++.+....+....| ...|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 467777766665544332211 122322234445667777777777777653 34433222 2245666677777777
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhCCCHHHHH
Q 008249 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIV-------AYNVLINGFCLNGDISSAF 316 (572)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~a~ 316 (572)
+.++++.+..+ .+......+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...
T Consensus 174 ~~l~~~~~~~P----~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 174 HGVDKLLEVAP----RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHhcCC----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 77777776655 566666667777777777777777777776654322111 1111222222222333333
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008249 317 AYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKS 396 (572)
Q Consensus 317 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 396 (572)
++++.+.+. .+.+......+...+...|+.++|.++++...+. ++|.... ++.+....++.+++.+.++...+..
T Consensus 250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC
Confidence 333333221 1223334444444444555555555544444442 2222111 1111222344444444444444433
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 397 VVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEM 462 (572)
Q Consensus 397 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 462 (572)
+. |+..+..+...+.+.+++++|.+.|+...+. .|+..++..+...+.+.|+.++|.+++++-
T Consensus 325 P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 325 GD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 32 3334444444444444444444444444442 244444444444444444444444444433
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=2.9e-12 Score=127.33 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=63.6
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHhCCChhHHH
Q 008249 166 IGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNR--VTHNILVHALCKKGLLGDAV 243 (572)
Q Consensus 166 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~ 243 (572)
.|+++.|.+.+.+..+..+.| ...+-....+..+.|+++.|.+.+++..+.. |+. .........+...|+++.|.
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456666666665555543322 2223333445555566666666666655432 232 22222345555566666666
Q ss_pred HHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008249 244 KFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN 291 (572)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 291 (572)
+.++.+.+..| .+..+...+...+...|++++|.+.+..+.+.+
T Consensus 174 ~~l~~l~~~~P----~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 174 HGVDKLLEMAP----RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHHHhCC----CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 66666666554 445555566666666666666666666666554
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=2.8e-15 Score=141.55 Aligned_cols=261 Identities=20% Similarity=0.157 Sum_probs=103.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 008249 301 VLINGFCLNGDISSAFAYFCQMLKRGFLP-DVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIH 379 (572)
Q Consensus 301 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 379 (572)
.+...+.+.|++++|+++++.......+| |...|..+.......++++.|.+.++.+...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34566667777777777775544432123 3333444455556677778888888777765432 45556666665 577
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008249 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFG-VSSNVFTFNALILAETRGGSIFDAFSL 458 (572)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~ 458 (572)
+++++|.+++....+.. +++..+...+..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888877766543 455667777778888888888888888876532 345667778888888888888888888
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008249 459 KKEMLLDGIFP-DVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGL 537 (572)
Q Consensus 459 ~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 537 (572)
+++..+. .| |......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|...+++..+..
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 8888875 34 46677788888888888888888888877653 5566777888888888999999999999888762
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 538 AIDHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 538 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
+.|+.+...+.+++...|+.++|.++.++.++
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 33677777888888899999999888887764
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=3.7e-15 Score=140.65 Aligned_cols=262 Identities=19% Similarity=0.131 Sum_probs=95.2
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhCC-CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008249 123 AVIRDLCLGGKIGTALWLRRKMIQKG-TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRV 201 (572)
Q Consensus 123 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 201 (572)
.+...+.+.|++++|++++++..... .+.++..|..+.......++++.|...++++...++. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 45677778888888888886554443 2334444555556666677888888888888776553 55666666666 677
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 008249 202 NELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQAL 281 (572)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 281 (572)
+++++|.++++..-+. .+++..+..++..+...++++++.++++.+..... .+.+...|..+...+.+.|+.++|+
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA--APDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888887766543 34566667777777788888888888888765442 2267777777788888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008249 282 ALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTG 361 (572)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 361 (572)
+.+++..+.. |.|....+.++..+...|+.+++.+++....+.. +.|...+..+..++...|+.++|..+++...+..
T Consensus 167 ~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 167 RDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 8888877764 3356677777777777787777777777766553 3445556677777777777777877777776642
Q ss_pred CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008249 362 VAPDQISYKTIIQGLCIHGDIVKAREFLLSML 393 (572)
Q Consensus 362 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 393 (572)
+.|..+...+.+++...|+.++|.++..+..
T Consensus 245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -TT-HHHHHHHHHHHT----------------
T ss_pred -ccccccccccccccccccccccccccccccc
Confidence 3466777777777777777777777766654
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=7.7e-11 Score=109.76 Aligned_cols=382 Identities=13% Similarity=0.051 Sum_probs=218.6
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHH--H
Q 008249 150 VPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTH--N 227 (572)
Q Consensus 150 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~ 227 (572)
..|+..+-.....+.+.|....|+..|......-| ..=.+|..|... ..+.+ ....... |.+.|.... -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P-~~W~AWleL~~l---it~~e----~~~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP-WFWSAWLELSEL---ITDIE----ILSILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC-cchHHHHHHHHh---hchHH----HHHHHHh-cCcccchHHHHH
Confidence 44555555555566667777777777777655433 122223222222 12222 2222221 112111111 1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 008249 228 ILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNI--QTDIVAYNVLING 305 (572)
Q Consensus 228 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~ 305 (572)
-+..++....+.+++.+-.+.....|. . .+...-+....+.....++++|+.+|+++.+.+. --|..+|+.++-.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf-~--~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGF-P--NSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC-C--ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 233455555566667666666666654 1 2222333333444556677777777777776520 1244556555432
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 008249 306 FCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKA 385 (572)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 385 (572)
++.+-. +..+-+-.-.--+--+.|...+.+.|.-.++.++|...|++..+.+ +.....|+.+.+-|....+...|
T Consensus 309 --~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 309 --KNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred --HhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHH
Confidence 222111 1111111111011223455666677777777777777777777754 22456777777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 386 REFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLD 465 (572)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 465 (572)
++-++..++-++. |-..|-.|..+|.-.+...-|.-.|++.....+ -|...|.+|..+|.+.++.++|++.|......
T Consensus 384 i~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 7777777776554 667777777777777777777777777776533 36777777778887778888888887777766
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008249 466 GIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLR----RGITPD--IITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI 539 (572)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 539 (572)
|-. +...+..|.+.|-+.++.++|...|+..++ .|...+ .....-|..-+.+.+++++|.......... .+
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~ 538 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ET 538 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--Cc
Confidence 432 556777777777777777777777776654 232222 222233555666777777777766665543 34
Q ss_pred ChHHHHHHHHHHHh
Q 008249 540 DHIPFRILKKRYRR 553 (572)
Q Consensus 540 ~~~~~~~l~~~~~~ 553 (572)
...--..|++.+.+
T Consensus 539 e~eeak~LlReir~ 552 (559)
T KOG1155|consen 539 ECEEAKALLREIRK 552 (559)
T ss_pred hHHHHHHHHHHHHH
Confidence 44445556555544
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=3.9e-12 Score=112.90 Aligned_cols=302 Identities=13% Similarity=0.175 Sum_probs=205.8
Q ss_pred chhHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCC---ChhhHHHH
Q 008249 83 PQAVFNALDLILKENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVP---DVLTHNYL 159 (572)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~l 159 (572)
|..++..++.++++.-+++.+.+..+.+ +-+.+..+.-+|.+-|.+.|..+.|+++...+.++.-.+ ...+...|
T Consensus 36 sr~Yv~GlNfLLs~Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL 113 (389)
T COG2956 36 SRDYVKGLNFLLSNQPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQL 113 (389)
T ss_pred cHHHHhHHHHHhhcCcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4556777777776655555544444321 112344566778888888899999999888888762111 11233456
Q ss_pred HHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHh
Q 008249 160 VNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNR----VTHNILVHALCK 235 (572)
Q Consensus 160 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~ 235 (572)
..-|...|-++.|+.+|..+.+.+. --..+...|+..|-...+|++|+++-+++.+.+-.+.. ..|.-|...+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 6778888888999888888876543 34567788888888888899998888888876654432 235556666666
Q ss_pred CCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 008249 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSA 315 (572)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 315 (572)
..+++.|..++.+..+.++ ..+.+--.+.+.+...|+++.|.+.|+.+.+.+..--..+...|..+|.+.|+.++.
T Consensus 193 ~~~~d~A~~~l~kAlqa~~----~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 193 SSDVDRARELLKKALQADK----KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred hhhHHHHHHHHHHHHhhCc----cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 7888888888888888765 667777778888888888999988888888876555566777888888888888888
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH---cCCHHHHHHHHHHH
Q 008249 316 FAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCI---HGDIVKAREFLLSM 392 (572)
Q Consensus 316 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~ 392 (572)
...+..+.+... ....-..+........-.+.|..++.+-.+. +|+...+..+++.... .|...+...++++|
T Consensus 269 ~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 269 LNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred HHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 888888877633 3333333333333334445555555444443 5788888888876654 33455556666666
Q ss_pred HhC
Q 008249 393 LEK 395 (572)
Q Consensus 393 ~~~ 395 (572)
...
T Consensus 345 vge 347 (389)
T COG2956 345 VGE 347 (389)
T ss_pred HHH
Confidence 543
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=9.6e-12 Score=110.48 Aligned_cols=291 Identities=16% Similarity=0.133 Sum_probs=148.5
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHH
Q 008249 201 VNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQA 280 (572)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 280 (572)
.++.++|.++|-+|.+.. +-+..+..+|.+.|.+.|.+|.|+++...+.++..........+...|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 455667777777776532 2233445556666777777777777777666643322112233445556666666666677
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHHcCCHHHHHHHHHH
Q 008249 281 LALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDV----ITYNTLLNCLCKQGKLDEASHFYGV 356 (572)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~ 356 (572)
+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+-.+.. ..|.-+...+....+.+.|..++..
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 76666666544 233445556666666666666666666666655433321 1233333344444555555555555
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008249 357 LSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNV 436 (572)
Q Consensus 357 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 436 (572)
..+.+ +..+..--.+.+.....|++..|.+.++.+.+.++..-+.+...|..+|...|+.++....+..+.+....++
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~- 283 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD- 283 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc-
Confidence 55542 1123333344445555566666666666665555444444555555566666666665555555554322222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 008249 437 FTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN---LGHIHLALQLYDEML 498 (572)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~ 498 (572)
.-..+...-......+.|..++.+-... +|+...+..|++.... .|...+.+.+++.|+
T Consensus 284 -~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 284 -AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred -HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 2222222222233334444433333322 3555555555554432 233444444444444
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=9.8e-13 Score=127.84 Aligned_cols=285 Identities=13% Similarity=0.036 Sum_probs=188.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 008249 276 DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRG--FLPDVITYNTLLNCLCKQGKLDEASHF 353 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~A~~~ 353 (572)
+.++|+..|..+..+- .-.......+..+|...+++++|.++|+.+.+.. ..-+...|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 4567777777755442 2233455567777888888888888887776641 11245566665543322 112222
Q ss_pred H-HHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008249 354 Y-GVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGV 432 (572)
Q Consensus 354 ~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 432 (572)
+ +.+.+. -+-.+.+|.++.++|.-.++.+.|++.|++....+.. ...+|+.+..-+.....+|.|...|+......+
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 223332 2345678888888888888888888888888776543 566777777777777888888888887766422
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008249 433 SSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTEL 512 (572)
Q Consensus 433 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 512 (572)
. +...|-.+...|.+.++++.|+-.|+++.+-+.. +.+....+...+-+.|+.++|+++++++.... +-|+..-...
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 2 3345555667788888888888888887775433 56666677777778888888888888887653 3344444455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 513 IKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 513 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
+..+...+++++|...++++.+. ++.+...+..++..|.+.|+.+.|..-|-=+.+.|
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 66677778888888888888875 23345567777888888888888887776665544
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=3.5e-11 Score=110.34 Aligned_cols=285 Identities=12% Similarity=0.060 Sum_probs=167.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 008249 274 NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHF 353 (572)
Q Consensus 274 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 353 (572)
.|++..|++...+-.+.+ +.....|..-.++.-+.|+.+.+-.++.+..+.--.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655554 3334445555555556666666666666665543334444555555566666666666666
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 354 YGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPH-------IWNVIIDGYGRCGDLSNAFSIRDL 426 (572)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~ 426 (572)
.+++.+.+ +.+.........+|.+.|++.....++..+.+.+.-.+.. +|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66665553 2345556666666666666666666666666665543332 344455444444444444445554
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008249 427 MLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI 506 (572)
Q Consensus 427 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 506 (572)
..+. ...++..-.+++.-+...|+.++|.++.++..+.+..|+.. ..-.+.+-++...-++..+..... .+.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 4332 22244455566666667777777777777777666555511 122344556666655555555443 23444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 507 ITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 507 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
..+.+|...|.+.+.+.+|.+.|+...+. .|+..+|..+.+++.+.|+.++|.+.+++.+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 66667777777777777777777766654 5677777777777777777777777776654
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=5.5e-11 Score=109.07 Aligned_cols=292 Identities=16% Similarity=0.108 Sum_probs=131.4
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHH
Q 008249 166 IGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKF 245 (572)
Q Consensus 166 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 245 (572)
.|++.+|+++..+-.+.+..| ...|..-+.+.-+.|+.+.+-.++.+..+..-.++...+.+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 355555555555554444432 2334444444445555555555555554432233334444444555555555555555
Q ss_pred HHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 246 LGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
++++.+..+ ..+.+.....++|.+.|++.+...++.++.+.|.-.+...- +
T Consensus 176 v~~ll~~~p----r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~-------- 226 (400)
T COG3071 176 VDQLLEMTP----RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------R-------- 226 (400)
T ss_pred HHHHHHhCc----CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------H--------
Confidence 555555443 44445555555555555555555555555544432222100 0
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008249 326 GFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWN 405 (572)
Q Consensus 326 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 405 (572)
....+|..+++-....+..+.-...++...+. .+.++..-.+++.-+.+.|+.++|.++..+..+++..|. ..
T Consensus 227 ---le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~ 299 (400)
T COG3071 227 ---LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC 299 (400)
T ss_pred ---HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH
Confidence 00123334444333333333333333333322 233344444455555555555555555555555544433 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008249 406 VIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLG 485 (572)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 485 (572)
. .-.+.+-++.+.-.+..+...+..+ -+...+.+|...|.+.+.|.+|...|+...+ ..|+..+|+.+.+++.+.|
T Consensus 300 ~-~~~~l~~~d~~~l~k~~e~~l~~h~-~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g 375 (400)
T COG3071 300 R-LIPRLRPGDPEPLIKAAEKWLKQHP-EDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLG 375 (400)
T ss_pred H-HHhhcCCCCchHHHHHHHHHHHhCC-CChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcC
Confidence 1 1122333444444444433333211 1224444455555555555555555554443 2344555555555555555
Q ss_pred CHHHHHHHHHHHH
Q 008249 486 HIHLALQLYDEML 498 (572)
Q Consensus 486 ~~~~A~~~~~~m~ 498 (572)
+..+|.+..++..
T Consensus 376 ~~~~A~~~r~e~L 388 (400)
T COG3071 376 EPEEAEQVRREAL 388 (400)
T ss_pred ChHHHHHHHHHHH
Confidence 5555555544443
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5.7e-10 Score=106.71 Aligned_cols=264 Identities=14% Similarity=0.053 Sum_probs=124.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 008249 300 NVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIH 379 (572)
Q Consensus 300 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 379 (572)
..-..-+...+++.+..++.+...+. .++....+..-|.++...|+..+-..+-..+.+. .|..+.+|-++.-.|.-.
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHh
Confidence 33334444455555555555555543 2333333334444555555555554444455443 233445555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLK 459 (572)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 459 (572)
|+.++|.+.|.+....+.. -...|-.+...|+-.|..++|...+....+.-.. ....+--+..-|.+.++.+.|.+.|
T Consensus 326 ~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred cCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHH
Confidence 5555555555555443322 2234555555555555555555555444332100 1111112222344455555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 460 KEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRR--GIT----PDIITYTELIKGHCARGNMKEAEEVFAKIQ 533 (572)
Q Consensus 460 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~----p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 533 (572)
.+..... +-|+..++-+.-.....+.+.+|..+|+..... .+. --..+++.|..+|.+.+.+++|+..+++..
T Consensus 404 ~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 404 KQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred HHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 5554421 113444444444444455555555555554421 000 112334555555555555555555555555
Q ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 534 TLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 534 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
.. .+.|..++.+++-.|...|+++.|.+.|.+.|-
T Consensus 483 ~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 483 LL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred Hc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 54 233445555555555555555555555555543
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=5.7e-12 Score=122.63 Aligned_cols=285 Identities=14% Similarity=0.022 Sum_probs=171.6
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHhCCChhHHHHH
Q 008249 168 DLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNG--IRPNRVTHNILVHALCKKGLLGDAVKF 245 (572)
Q Consensus 168 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~ 245 (572)
+..+|...|+.+.+.-. -+......+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+-.+-+. -+---+
T Consensus 334 ~~~~A~~~~~klp~h~~-nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~---v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHY-NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE---VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh---HHHHHH
Confidence 34566666666433222 233445556666667777777777777665542 111445555555433221 111122
Q ss_pred HHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 246 LGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
-+++++..+ ..+.+|-++.++|.-+++.+.|++.|++..+.+ +....+|+.+.+-+.....+|.|...|+..+..
T Consensus 410 aq~Li~~~~----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 410 AQDLIDTDP----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHhhCC----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 233444343 566677777777777777777777777777654 335667777777777777777777777665543
Q ss_pred CCCCCHhHHH---HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008249 326 GFLPDVITYN---TLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPH 402 (572)
Q Consensus 326 g~~p~~~~~~---~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 402 (572)
|...|+ -+.-.|.+.++++.|+-.|+...+.+ +.+.+....+...+-+.|+.++|+++++++...+.+ |+.
T Consensus 485 ----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 485 ----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred ----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 333333 34556677777777777777776653 234555666666666777777777777777766555 444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008249 403 IWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIF 468 (572)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 468 (572)
.--..+..+...+++++|...++++.+.- +-+...|..+...|.+.|+.+.|+.-|--+.+.+.+
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 44445556666777777777777776642 224456666667777777777777777666665433
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.52 E-value=1.6e-11 Score=122.63 Aligned_cols=428 Identities=15% Similarity=0.090 Sum_probs=272.8
Q ss_pred CCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 008249 113 TLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYN 192 (572)
Q Consensus 113 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 192 (572)
|+.||.+||..+|..||..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.+. .|...+|.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 88999999999999999999999998 9999998888889999999999999999988873 57889999
Q ss_pred HHHHHHHhcCCHhH---HHHHHHHHH----HCCCCCCHhHH--------------HHHHHHHHhCCChhHHHHHHHHHHh
Q 008249 193 AFITGYCRVNELDK---ALHLFSTMA----NNGIRPNRVTH--------------NILVHALCKKGLLGDAVKFLGEVLA 251 (572)
Q Consensus 193 ~li~~~~~~g~~~~---A~~~~~~m~----~~g~~p~~~~~--------------~~ll~~~~~~g~~~~a~~~~~~~~~ 251 (572)
.|..+|...|+... +.+.++... ..|+......+ ...+....-.|-++.+.+++..+..
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 99999999998654 333222221 12221111111 1223333444556666666655543
Q ss_pred CCCCCCCccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 008249 252 DDDGKATSDVITSTILMDSYFKN-GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD 330 (572)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 330 (572)
..... |... .++-.... ..+++-...-....+ .|++.+|..++..-.-+|+.+.|..++.+|.+.|++.+
T Consensus 168 sa~~~--p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 168 SAWNA--PFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred ccccc--hHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 33211 1111 12222222 223333333333332 58999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHH------------------------HH
Q 008249 331 VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVK------------------------AR 386 (572)
Q Consensus 331 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~------------------------A~ 386 (572)
..-|-.++-+ .++...+..++.-|...|+.|+..|+...+-.+.++|.... |.
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~ 315 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLAN 315 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhH
Confidence 8878777755 88889999999999999999999998776665554332111 11
Q ss_pred HHHHHHH------------hCCCCCCHHHHHHHHHHHHhcCCHH--------------------------HHHHHHHHHH
Q 008249 387 EFLLSML------------EKSVVPEPHIWNVIIDGYGRCGDLS--------------------------NAFSIRDLML 428 (572)
Q Consensus 387 ~~~~~~~------------~~~~~~~~~~~~~li~~~~~~g~~~--------------------------~A~~~~~~~~ 428 (572)
+.++.-. -.|.......|...+...- .|.-+ .+.+.|.+..
T Consensus 316 k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~h-Qgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e 394 (1088)
T KOG4318|consen 316 KRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRH-QGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIE 394 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHH-cCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHH
Confidence 1111000 0011111111211111100 01000 0111111110
Q ss_pred hC-----------------------------CCCCC----------------------------HHHHHHHHHHHHhcCC
Q 008249 429 SF-----------------------------GVSSN----------------------------VFTFNALILAETRGGS 451 (572)
Q Consensus 429 ~~-----------------------------~~~p~----------------------------~~~~~~ll~~~~~~g~ 451 (572)
.. ...|| ...-+.++..++..-+
T Consensus 395 ~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n 474 (1088)
T KOG4318|consen 395 RHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYN 474 (1088)
T ss_pred hhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 00 00011 1122556666776666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 452 IFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRR--GITPDIITYTELIKGHCARGNMKEAEEVF 529 (572)
Q Consensus 452 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 529 (572)
..++...-+..... .-| ..|..||+-++...+.+.|..+.++.... .+..|..-+..+.+.+.+.+....+..++
T Consensus 475 ~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 475 KLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 66666554444332 122 57889999999999999999999998753 34567778888999999999999999999
Q ss_pred HHHHHcC-CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 530 AKIQTLG-LAID-HIPFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 530 ~~m~~~g-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
+++.+.- ..|+ ..++-.+.+.....|+.+...++++-+.
T Consensus 552 ~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv 592 (1088)
T KOG4318|consen 552 YEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV 592 (1088)
T ss_pred hhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH
Confidence 9998742 1222 3345567777778888888887776553
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.50 E-value=1.3e-08 Score=98.78 Aligned_cols=435 Identities=13% Similarity=0.102 Sum_probs=279.9
Q ss_pred HhHHHHHHHHHhCCChhhHHHHHHHHHhC-CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008249 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQK-GTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (572)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (572)
..|-..+..+.++|++..-+..|++.+.. .+......|...+......|-++.+..++++.++..| ..-+-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P----~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP----EAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH----HHHHHHHHH
Confidence 46888888889999999999999998765 3444566788889989999999999999999987554 335677888
Q ss_pred HHhcCCHhHHHHHHHHHHHCC------CCCCHhHHHHHHHHHHhCCChh---HHHHHHHHHHhCCCCCCCccHHHHHHHH
Q 008249 198 YCRVNELDKALHLFSTMANNG------IRPNRVTHNILVHALCKKGLLG---DAVKFLGEVLADDDGKATSDVITSTILM 268 (572)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (572)
++..+++++|.+.+...+... .+.+-..|..+-+..++.-+.- ....+++.++.... . .-...|++|.
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rft-D--q~g~Lw~SLA 255 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFT-D--QLGFLWCSLA 255 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCc-H--HHHHHHHHHH
Confidence 999999999999999886432 2334455666666555544332 33445555554432 1 2356899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC----------------C------CHHHHHHHHHHHHHCC
Q 008249 269 DSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN----------------G------DISSAFAYFCQMLKRG 326 (572)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g------~~~~a~~~~~~m~~~g 326 (572)
+.|.+.|.++.|.++|++.... ...+.-|..+.++|..- | +++-.+..|+.+...+
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 9999999999999999998876 23333444444444321 1 1222334444443331
Q ss_pred C-----------CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------HhhHHHHHHHHHHcCCHHHHHHHH
Q 008249 327 F-----------LPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPD------QISYKTIIQGLCIHGDIVKAREFL 389 (572)
Q Consensus 327 ~-----------~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~ 389 (572)
. +.++..|..-+. ...|+..+-...+.+..+. +.|. ...|..+...|-..|+++.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 0 112222222221 3345666667777777664 3332 246788888999999999999999
Q ss_pred HHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------------CHHHHHHHHHHHHhc
Q 008249 390 LSMLEKSVVPE---PHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSS-----------------NVFTFNALILAETRG 449 (572)
Q Consensus 390 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----------------~~~~~~~ll~~~~~~ 449 (572)
++..+...+-- ..+|.....+-.+..+++.|.++.+......-.| +...|+..++.--..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99987654422 2456666666778888999998887765431111 223455555656667
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHH
Q 008249 450 GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI-ITYTELIKGHCA---RGNMKEA 525 (572)
Q Consensus 450 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~---~g~~~~A 525 (572)
|-++....+|+++.+..+. ++.........+-...-++++.++|++-+..=-.|++ ..|+..+.-+.+ .-+.+.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 8888888899988877554 3332222333334455677888887765543123444 566666655543 2367888
Q ss_pred HHHHHHHHHcCCCCChHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 008249 526 EEVFAKIQTLGLAIDHIPFR--ILKKRYRRMKESDKARDIHQKW 567 (572)
Q Consensus 526 ~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~ 567 (572)
..+|+++++ |.+|...-+. .....=.+-|....|..+++++
T Consensus 570 RdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 570 RDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888888888 5666443222 2222223457777788887775
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=7.6e-10 Score=105.89 Aligned_cols=454 Identities=13% Similarity=0.065 Sum_probs=294.2
Q ss_pred ccccCCCCchhHHHHHHHHH-HHhHHHHHHHHhcCCCCCCCCcCHHhHHHHHHHHHhCCChhhHHHHHHHH----HhCC-
Q 008249 75 KDSDNEGNPQAVFNALDLIL-KENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKM----IQKG- 148 (572)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g- 148 (572)
+-.....+|..+|-....++ .+...++..+..... -...|..+.......+.+..+++.|..++... ....
T Consensus 41 kV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~---le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~y 117 (611)
T KOG1173|consen 41 KVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYK---LEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSY 117 (611)
T ss_pred HHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhh
Confidence 33344466776665554443 222333333333321 12456677777778888888999998888722 1110
Q ss_pred --------CCCChhh-----------HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 008249 149 --------TVPDVLT-----------HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALH 209 (572)
Q Consensus 149 --------~~~~~~~-----------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 209 (572)
..+|..- +-.-...|....++++|...+.+.....+ .+-..+..++.... -.+.+
T Consensus 118 y~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~-~c~Ea~~~lvs~~m-----lt~~E 191 (611)
T KOG1173|consen 118 YEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADA-KCFEAFEKLVSAHM-----LTAQE 191 (611)
T ss_pred cchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcch-hhHHHHHHHHHHHh-----cchhH
Confidence 0011110 00011234445567777777777654333 12223333333322 22333
Q ss_pred HHHHHHHCCC----CCCHhHHHHHHHHH-HhCCChhHHHHHHH-HHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 008249 210 LFSTMANNGI----RPNRVTHNILVHAL-CKKGLLGDAVKFLG-EVLADDDGKATSDVITSTILMDSYFKNGDKFQALAL 283 (572)
Q Consensus 210 ~~~~m~~~g~----~p~~~~~~~ll~~~-~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 283 (572)
.++.+..... .-+......+.... ++..+. .....-+ +-+. ....+......-.+-+...+++.+..++
T Consensus 192 e~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~-~~~~r~~~~sl~----~l~~~~dll~~~ad~~y~~c~f~~c~ki 266 (611)
T KOG1173|consen 192 EFELLESLDLAMLTKEDVERLEILYELKLCKNRNE-ESLTRNEDESLI----GLAENLDLLAEKADRLYYGCRFKECLKI 266 (611)
T ss_pred HHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccc-cccccCchhhhh----hhhhcHHHHHHHHHHHHHcChHHHHHHH
Confidence 3333332111 11222222222211 111110 0000000 0000 1115666777778888899999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008249 284 WNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVA 363 (572)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 363 (572)
++...+.. ++....+..-|.++...|+..+-+.+=.++++. .+....+|-++.-.|.-.|+.++|.+.|......+
T Consensus 267 t~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-- 342 (611)
T KOG1173|consen 267 TEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-- 342 (611)
T ss_pred hHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC--
Confidence 99999876 777778888888999999999888888888876 44567889888888888999999999999887643
Q ss_pred CC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008249 364 PD-QISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442 (572)
Q Consensus 364 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 442 (572)
|. ...|-.+...|.-.|..++|+..+...-+.-.. ...-+-.+.--|.+.++.+.|.+.|.......+ -|+...+-+
T Consensus 343 ~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P-~Dplv~~El 420 (611)
T KOG1173|consen 343 PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP-SDPLVLHEL 420 (611)
T ss_pred ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC-Ccchhhhhh
Confidence 32 467888999999999999999998887663211 111133345567889999999999998877533 377788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC--CCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008249 443 ILAETRGGSIFDAFSLKKEMLLD--GIF----PDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGH 516 (572)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~m~~~--~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 516 (572)
.-.....+.+.+|..+|+..... .+. --..+++.|..+|.+.+++++|+..+++.... .+-+..++.++.-.|
T Consensus 421 gvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy 499 (611)
T KOG1173|consen 421 GVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIY 499 (611)
T ss_pred hheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHH
Confidence 77777889999999999987732 111 13456889999999999999999999999986 477889999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 008249 517 CARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRY 551 (572)
Q Consensus 517 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 551 (572)
...|+++.|.+.|.+.... .||..+...++..+
T Consensus 500 ~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 500 HLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA 532 (611)
T ss_pred HHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 9999999999999999875 78776655555543
No 56
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.47 E-value=2.3e-08 Score=97.52 Aligned_cols=449 Identities=16% Similarity=0.089 Sum_probs=292.1
Q ss_pred HHhHHHHHHHHhcCCCCCCCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHH
Q 008249 95 KENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADH 174 (572)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 174 (572)
+.++..+..+...++ -.+++ .....-.+...|+-++|....+...+.. .-+.+.|..+.-.+....++++|++
T Consensus 24 kkgLK~~~~iL~k~~----eHges--lAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 24 KKGLKLIKQILKKFP----EHGES--LAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HhHHHHHHHHHHhCC----ccchh--HHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 344555566666543 22333 2333334566689999999888877754 3466778888888888899999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 008249 175 VIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
.++.....++ .|...|.-+.-.-++.|+++..........+.. +-....|..+..+..-.|+...|..++++..+...
T Consensus 97 cy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999998876 578888888777888899988888888887752 22455677888888889999999999999887653
Q ss_pred CCCCccHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 008249 255 GKATSDVITSTILM------DSYFKNGDKFQALALWNDMFQKNIQTDIVAY-NVLINGFCLNGDISSAFAYFCQMLKRGF 327 (572)
Q Consensus 255 ~~~~~~~~~~~~l~------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~ 327 (572)
.. ++...+.... ....+.|..++|++.+...... ..|...+ .+-...+.+.++.++|..++..++..
T Consensus 175 ~~--~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r-- 248 (700)
T KOG1156|consen 175 TS--PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER-- 248 (700)
T ss_pred cC--CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--
Confidence 22 5554444332 3446678888888877766543 2233333 34456778899999999999999987
Q ss_pred CCCHhHHHHHHH-HHHHcCCHHHHH-HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008249 328 LPDVITYNTLLN-CLCKQGKLDEAS-HFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWN 405 (572)
Q Consensus 328 ~p~~~~~~~ll~-~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 405 (572)
.||...|...+. ++.+..+..++. .+|....+. .+.....-..=+.......-.+..-+++..+.+.|+++ ++.
T Consensus 249 nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~ 324 (700)
T KOG1156|consen 249 NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFK 324 (700)
T ss_pred CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhh
Confidence 567666655544 443444444444 666665543 21111111111111111223444556777777887664 344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----CC----------CCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008249 406 VIIDGYGRCGDLSNAFSIRDLMLS----FG----------VSSNVFT--FNALILAETRGGSIFDAFSLKKEMLLDGIFP 469 (572)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~~~~----~~----------~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p 469 (572)
.+...|-.-...+-..++...+.. .| -+|.... +-.++..+-+.|+++.|..+++..+.+ .|
T Consensus 325 dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TP 402 (700)
T KOG1156|consen 325 DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TP 402 (700)
T ss_pred hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--Cc
Confidence 444444332222211111111111 11 1345444 445678889999999999999999886 56
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChH------
Q 008249 470 D-VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHI------ 542 (572)
Q Consensus 470 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------ 542 (572)
+ ...|..=.+.+...|++++|..++++.++.+ .||...=.--+.-..++++.++|.++.....+.|. +..
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~m 479 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEM 479 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHh
Confidence 6 4456666788999999999999999999864 45554444555666789999999999999988764 221
Q ss_pred --HHHH--HHHHHHhcCCHHHHHHHHHHH
Q 008249 543 --PFRI--LKKRYRRMKESDKARDIHQKW 567 (572)
Q Consensus 543 --~~~~--l~~~~~~~g~~~~A~~~~~~~ 567 (572)
.|-. =+.+|.+.|++..|.+=|..+
T Consensus 480 qcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 480 QCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 1222 245688888888887665544
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=7.3e-10 Score=104.02 Aligned_cols=191 Identities=10% Similarity=0.055 Sum_probs=151.3
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008249 377 CIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAF 456 (572)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 456 (572)
.-.|+...|.+-|+..++....++. .|-.+..+|....+.++....|.+..+.++. |..+|..-.+.+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 3468889999999999987665333 3878888999999999999999999987654 6677777777777889999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008249 457 SLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG 536 (572)
Q Consensus 457 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 536 (572)
.-|++.+..... +...|--+.-+..+.+++++++..|++..++ +|-.+..|+.....+..+++++.|.+.|+.+.+..
T Consensus 415 aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999999985322 4666777777777899999999999999876 67778999999999999999999999999998762
Q ss_pred CC-----CChHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008249 537 LA-----IDHIP--FRILKKRYRRMKESDKARDIHQKWLLRNK 572 (572)
Q Consensus 537 ~~-----p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 572 (572)
.. .+... -..++-.-. .+++..|.+++++.++.|+
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dp 534 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDP 534 (606)
T ss_pred cccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCc
Confidence 11 12222 222222222 3889999999999988764
No 58
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.45 E-value=1.7e-08 Score=98.42 Aligned_cols=430 Identities=16% Similarity=0.081 Sum_probs=291.5
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008249 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR 200 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 200 (572)
|..++. +...+++...+++.+.++. +.+....+.....-.+...|+-++|....+.-...++ .+.+.|..+.-.+-.
T Consensus 11 F~~~lk-~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALK-CYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHH-HHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhh
Confidence 444444 4566889999999999888 4555667777777778888999999998888887666 467889888888888
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHH
Q 008249 201 VNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQA 280 (572)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 280 (572)
..++++|++.|......+ +-|...+.-+.-.=.+.|+++.....-...++..+ .....|..++.++.-.|+...|
T Consensus 88 dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~----~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP----SQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998864 33666777776666778888888888888888665 6778899999999999999999
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHH------HHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 008249 281 LALWNDMFQKN-IQTDIVAYNVLI------NGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHF 353 (572)
Q Consensus 281 ~~~~~~~~~~~-~~~~~~~~~~li------~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 353 (572)
..++++..+.. -.|+...|.... ....+.|..++|++.+..-... +.-....-.+-...+.+.+++++|..+
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 99999988764 346666664432 2345678888888887665443 221223334556678899999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHH-HHHHHcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008249 354 YGVLSKTGVAPDQISYKTII-QGLCIHGDIVKAR-EFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFG 431 (572)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 431 (572)
+..++.. .||..-|...+ .++.+..+.-++. .+|....+.-...... -..=++......-.+....++..+.+.|
T Consensus 242 y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p-~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 242 YRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP-RRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc-hhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 9999986 36665555444 4444444444454 5555554432211111 1111111111222344445667777788
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCC----------CCCCHHH--HHHHHHHHHhcCCHHHHHHHHH
Q 008249 432 VSSNVFTFNALILAETRGGSIFDAFSLKKEML----LDG----------IFPDVFT--YNLLIGASCNLGHIHLALQLYD 495 (572)
Q Consensus 432 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~----~~~----------~~p~~~~--~~~li~~~~~~g~~~~A~~~~~ 495 (572)
+++- +..+...|-.-...+-..++.-.+. ..| -.|.... +-.++..+-+.|+++.|...++
T Consensus 319 ~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 7653 3333333322111111111111111 111 1345444 4456777889999999999999
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 496 EMLRRGITPDI-ITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 496 ~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
..+.+ .|+. ..|..-.+.+...|++++|..++++..+.. .+|...=..-++-..++++.++|.++..+.-
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 99976 5665 567777889999999999999999999874 5566655566777788899999988876653
No 59
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=8.2e-08 Score=88.65 Aligned_cols=290 Identities=13% Similarity=0.008 Sum_probs=195.3
Q ss_pred hcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHHcCCHHHH
Q 008249 273 KNGDKFQALALWNDMFQK-NIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVI-TYNTLLNCLCKQGKLDEA 350 (572)
Q Consensus 273 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A 350 (572)
-.++...|...+-.+... -++-|+.....+...+...|+.++|...|++..-. .|+.. ......-.+.+.|+.+..
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhH
Confidence 344444444444433332 23556677777888888888888888888876653 33221 122222334677777777
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 351 SHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF 430 (572)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 430 (572)
..+...+.... +-....|-.-...+...+++..|+.+-++.+..+.. +...|-.-...+...|+.++|.-.|+.....
T Consensus 286 ~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 286 SALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 77777666542 223344444445555677888888888887776544 5556666667777888888888888887764
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCH-H
Q 008249 431 GVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLI-GASC-NLGHIHLALQLYDEMLRRGITPDI-I 507 (572)
Q Consensus 431 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~g~~p~~-~ 507 (572)
.+ -+...|..|++.|...|.+.+|...-+...+. +..+..+.+.+. ..|. .-..-++|.++++...+. .|+- .
T Consensus 364 ap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~ 439 (564)
T KOG1174|consen 364 AP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTP 439 (564)
T ss_pred ch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHH
Confidence 32 36788888888888888888888777666553 233555555442 2232 223357788888877663 5554 5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008249 508 TYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRNK 572 (572)
Q Consensus 508 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 572 (572)
..+.+...+...|+.+.++.++++.... .||....+.|++.+...+.+++|.+.|...+..|+
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 6677788888888888888888888875 67888888888888888888899888888887664
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=1.6e-10 Score=106.16 Aligned_cols=201 Identities=20% Similarity=0.170 Sum_probs=132.8
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+..+ .+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 34566777777777888888888887776653 33456667777777777888888777777777655 34556666777
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC
Q 008249 197 GYCRVNELDKALHLFSTMANNGIR-PNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (572)
.+...|++++|.+.+++....... .....+..+...+...|++++|.+.+++.+...+ .+...+..+...+...|
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP----QRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CChHHHHHHHHHHHHcC
Confidence 777777777777777777654211 1234455566666777777777777777776554 44556666667777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008249 276 DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 324 (572)
++++|...+++..+.. +.+...+..+...+...|+.++|..+.+.+..
T Consensus 184 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 184 QYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777777777666552 34455555566666666666666666655543
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=2.4e-10 Score=104.98 Aligned_cols=201 Identities=15% Similarity=0.081 Sum_probs=134.8
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008249 366 QISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILA 445 (572)
Q Consensus 366 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 445 (572)
...+..+...+...|++++|.+.+++..+..+. +...+..+...+...|++++|...+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 345555666666666777777766666654322 4555666666777777777777777766664332 44566666667
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008249 446 ETRGGSIFDAFSLKKEMLLDGIFP-DVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKE 524 (572)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 524 (572)
+...|++++|.+.+++.......| ....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776542222 24455666777778888888888888877652 3345677777788888888888
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008249 525 AEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 525 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
|.+.++++.+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88888887776 2335555666777777788888888887776554
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.42 E-value=3.2e-10 Score=117.20 Aligned_cols=266 Identities=14% Similarity=0.058 Sum_probs=166.1
Q ss_pred CCHHHHHHHHHHHHh-----cCCHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHH---------hCCChhHHHHHHHHHH
Q 008249 186 PNCATYNAFITGYCR-----VNELDKALHLFSTMANNGIRPN-RVTHNILVHALC---------KKGLLGDAVKFLGEVL 250 (572)
Q Consensus 186 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~---------~~g~~~~a~~~~~~~~ 250 (572)
.+...|...+.+... .+..++|.++|++..+. .|+ ...|..+..++. ..+++++|...+++++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 455555555555322 13356788888877764 343 444555544433 2234678888888888
Q ss_pred hCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 008249 251 ADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD 330 (572)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 330 (572)
+.++ .+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +
T Consensus 332 ~ldP----~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~ 405 (553)
T PRK12370 332 ELDH----NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-R 405 (553)
T ss_pred hcCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C
Confidence 8766 677778888888888888888888888888775 455667777778888888888888888887776322 2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008249 331 VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDG 410 (572)
Q Consensus 331 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 410 (572)
...+..++..+...|++++|...++++.....+.+...+..+...+...|+.++|...+.++...... +....+.+...
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~ 484 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAE 484 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHH
Confidence 22233344456667788888888887766432224445666777777888888888888776554322 33445555566
Q ss_pred HHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 411 YGRCGDLSNAFSIRDLMLSF-GVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLD 465 (572)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 465 (572)
|...| ++|...++.+.+. ...+....+ +-..|.-.|+.+.+..+ +++.+.
T Consensus 485 ~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 485 YCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 66666 3666666665442 111222222 23334445666665555 666654
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.42 E-value=4.2e-09 Score=104.56 Aligned_cols=436 Identities=14% Similarity=0.014 Sum_probs=261.5
Q ss_pred CCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 008249 114 LETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNA 193 (572)
Q Consensus 114 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 193 (572)
++-|...|..|.-++...|+++.+.+.|++.... ..-....|+.+...|...|.-..|..+++.-....+.|+..+--.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4467788888888899999999999999887764 234667788888888888888899888888777664454333323
Q ss_pred HH-HHHH-hcCCHhHHHHHHHHHHHC--CC--CCCHhHHHHHHHHHHhC-----------CChhHHHHHHHHHHhCCCCC
Q 008249 194 FI-TGYC-RVNELDKALHLFSTMANN--GI--RPNRVTHNILVHALCKK-----------GLLGDAVKFLGEVLADDDGK 256 (572)
Q Consensus 194 li-~~~~-~~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~ 256 (572)
++ ..|. +.+.+++++..-.+.... +. ...+..|..+.-+|... ....++.+.+++.++.++
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-- 475 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-- 475 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC--
Confidence 33 3333 346777777777666551 11 11233444444444321 123467788888888776
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 008249 257 ATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNT 336 (572)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 336 (572)
.|+.+...+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+...+. ..-|......
T Consensus 476 --~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~ 552 (799)
T KOG4162|consen 476 --TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDG 552 (799)
T ss_pred --CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchh
Confidence 3444444445567778889999999888888755778888888888888888999999888876654 1111111112
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 008249 337 LLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK--SVVPEPHIWNVIIDGYGRC 414 (572)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~ 414 (572)
-++.-...++.+++......+... +. +.... ...++-....+....+.-. ...-.+.++..+......
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~-we-~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~- 622 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLAL-WE-AEYGV-------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS- 622 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHH-HH-hhhhH-------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh-
Confidence 222223356666665555444331 00 00000 0011111111111111100 111112222222221111
Q ss_pred CCHHHHHHHHHHHHhCCC--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008249 415 GDLSNAFSIRDLMLSFGV--SSN------VFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGH 486 (572)
Q Consensus 415 g~~~~A~~~~~~~~~~~~--~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 486 (572)
+...+..-.. +.+... .|+ ...|......+.+.+..++|...+.+..... ......|......+...|.
T Consensus 623 -~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 623 -QLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred -hhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHh
Confidence 1111000000 111111 122 2234455566777888888887777776642 2245566666677778888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 487 IHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEE--VFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIH 564 (572)
Q Consensus 487 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (572)
.++|.+.|......+ |.++....++..++.+.|+..-|.. ++..+.+.+ +.++..|..++..+.+.|+.+.|.+.|
T Consensus 700 ~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 700 LEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred hHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 888888888887642 3345677888888888887777777 888888874 347778888888888888888888888
Q ss_pred HHHHhc
Q 008249 565 QKWLLR 570 (572)
Q Consensus 565 ~~~l~~ 570 (572)
...++.
T Consensus 778 ~aa~qL 783 (799)
T KOG4162|consen 778 QAALQL 783 (799)
T ss_pred HHHHhh
Confidence 877654
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.42 E-value=3.3e-10 Score=117.09 Aligned_cols=269 Identities=13% Similarity=0.024 Sum_probs=185.6
Q ss_pred CCChhhHHHHHHHHHH-----cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---------cCCHhHHHHHHHHHH
Q 008249 150 VPDVLTHNYLVNELCK-----IGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR---------VNELDKALHLFSTMA 215 (572)
Q Consensus 150 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 215 (572)
+.+...|...+.+... .+.+++|...|++..+..|. +...|..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3455655555554322 13467899999999887763 55666666555442 245789999999998
Q ss_pred HCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 008249 216 NNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTD 295 (572)
Q Consensus 216 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 295 (572)
+.+ +-+...+..+...+...|++++|...|+++++.++ .+...+..+...+...|++++|+..+++..+.+ +.+
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P----~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~ 405 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP----ISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTR 405 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCC
Confidence 764 23677788888888899999999999999999776 677888889999999999999999999998875 223
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 008249 296 IVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQG 375 (572)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 375 (572)
...+..++..+...|++++|...+++..+...+-+...+..+...+...|+.++|...+..+... .+.+....+.+...
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~ 484 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAE 484 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHH
Confidence 33344445556678899999999988876532224455677778888999999999999887664 22234445556666
Q ss_pred HHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008249 376 LCIHGDIVKAREFLLSMLEKS-VVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFG 431 (572)
Q Consensus 376 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 431 (572)
|...| ++|...++.+.+.. ..+....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 485 ~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 485 YCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 67666 47777777766532 11221222 44445566777777666 7776643
No 65
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.39 E-value=2.8e-07 Score=89.91 Aligned_cols=369 Identities=12% Similarity=0.080 Sum_probs=174.5
Q ss_pred HhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCC------CCCC-----
Q 008249 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMR------PSPN----- 187 (572)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~----- 187 (572)
.+|...+......|-++.++.++++.++. ++..-.-.|..+++.+++++|.+.+..+.... .+.+
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 35666677666667777777777777664 34445666677777777777766665553221 0111
Q ss_pred ---------------------------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 008249 188 ---------------------------------CATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALC 234 (572)
Q Consensus 188 ---------------------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 234 (572)
...|++|...|.+.|++++|..+|++..+. ..+..-|+.+.++|+
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHH
Confidence 234556666666666666666666665543 223334444444443
Q ss_pred hCC----------------------ChhHHHHHHHHHHhCCCC--------CCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 235 KKG----------------------LLGDAVKFLGEVLADDDG--------KATSDVITSTILMDSYFKNGDKFQALALW 284 (572)
Q Consensus 235 ~~g----------------------~~~~a~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 284 (572)
.-. +++-...-|+.+....+. +.+.++..|..-+. +..|+..+-...+
T Consensus 293 ~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~ty 370 (835)
T KOG2047|consen 293 QFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTY 370 (835)
T ss_pred HHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHH
Confidence 211 111112222222221110 00022222222222 2234444555555
Q ss_pred HHHHhCCCCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHHcCCHHHHHHHHH
Q 008249 285 NDMFQKNIQT------DIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD---VITYNTLLNCLCKQGKLDEASHFYG 355 (572)
Q Consensus 285 ~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~ 355 (572)
.+..+.- .| -...|..+...|-..|+.+.|..+|++..+-..+-- ..+|..-...=.+..+++.|.++.+
T Consensus 371 teAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 371 TEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMR 449 (835)
T ss_pred HHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5554321 11 123445555666666666666666666554322110 1223333333334455555665555
Q ss_pred HHHhCCC-----------CC------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008249 356 VLSKTGV-----------AP------DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLS 418 (572)
Q Consensus 356 ~~~~~~~-----------~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 418 (572)
......- ++ +...|...++.--..|-++....+++++.+..+. ++.........+-.+.-++
T Consensus 450 ~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfe 528 (835)
T KOG2047|consen 450 RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFE 528 (835)
T ss_pred hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHH
Confidence 4432210 00 1223444444444555666666666666655443 2222222222233344556
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHH
Q 008249 419 NAFSIRDLMLSFGVSSNV-FTFNALILAETR---GGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGA--SCNLGHIHLALQ 492 (572)
Q Consensus 419 ~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~ 492 (572)
++.+++++-...-..|++ ..|+..+.-+.+ ...++.|..+|++..+ |+.|...-+-.|+-+ --+.|-...|+.
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ams 607 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMS 607 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 666666655443333443 345555544433 2356777777777777 455543222222211 123455666666
Q ss_pred HHHHHH
Q 008249 493 LYDEML 498 (572)
Q Consensus 493 ~~~~m~ 498 (572)
++++..
T Consensus 608 iyerat 613 (835)
T KOG2047|consen 608 IYERAT 613 (835)
T ss_pred HHHHHH
Confidence 666654
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=1.4e-10 Score=103.30 Aligned_cols=230 Identities=13% Similarity=0.033 Sum_probs=165.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 008249 300 NVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIH 379 (572)
Q Consensus 300 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 379 (572)
+.+.++|.+.|.+.+|.+.|+...++ .|-+.||..|-+.|.+..++..|+.++.+-.+. ++-|+....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 55777888888888888888777765 456667777778888888888888888777664 333444444555666677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLK 459 (572)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 459 (572)
++.++|.++++...+.... ++.....+...|.-.++++-|...++++.+.|+. +...|+.+.-+|...++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7788888888887776433 5566666667777778888888888888887775 6777777777777788888888877
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 460 KEMLLDGIFPD--VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 460 ~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
++....-..|+ ...|-.+.......|++.-|.+.|+-....+ ..+...++.|.-.-.+.|++++|..+++.+...
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 77776533344 4456666666777788888888887777653 345577777777777888888888888777664
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=2e-08 Score=90.74 Aligned_cols=410 Identities=13% Similarity=0.070 Sum_probs=234.0
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 008249 124 VIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNE 203 (572)
Q Consensus 124 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 203 (572)
+...+.+.|++++|...+..+.+.. .++...+-.|...+.-.|.+.+|..+-.+. + .+.-.-..++....+.|+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~-k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA----P-KTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC----C-CChHHHHHHHHHHHHhCc
Confidence 4455667788888888888777643 456666666777777778888886555543 2 233344445555566777
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHH-HHHHHHhcCCHHHHHH
Q 008249 204 LDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTI-LMDSYFKNGDKFQALA 282 (572)
Q Consensus 204 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~ 282 (572)
-++-..+.+.+.+. ..--.+|.......-.+++|++++..++..++ +-...|. +.-+|.+..-++-+.+
T Consensus 137 Ek~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~-----ey~alNVy~ALCyyKlDYydvsqe 206 (557)
T KOG3785|consen 137 EKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP-----EYIALNVYMALCYYKLDYYDVSQE 206 (557)
T ss_pred HHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh-----hhhhhHHHHHHHHHhcchhhhHHH
Confidence 66666666655432 12233444444445567788888888877653 3333333 3445667777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC-----CHHHHHHHHHHH
Q 008249 283 LWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQG-----KLDEASHFYGVL 357 (572)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~~A~~~~~~~ 357 (572)
++.-..+.- +.++...|.......+.=.-..|..-.+.+.+.+-.. | ..+.-+++.+ .-+.|++++--+
T Consensus 207 vl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L 280 (557)
T KOG3785|consen 207 VLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSL 280 (557)
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHH
Confidence 777666542 3344555554444444322233444444444432111 1 1223333332 346677777666
Q ss_pred HhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhC
Q 008249 358 SKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGD-------LSNAFSIRDLMLSF 430 (572)
Q Consensus 358 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~ 430 (572)
.+. -|. .--.++-.|.+.+++.+|..+..++.- . ++.-|-.-.-.++..|+ ..-|.+.|...-+.
T Consensus 281 ~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~P--t--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~S 352 (557)
T KOG3785|consen 281 MKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDP--T--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGES 352 (557)
T ss_pred Hhh--ChH--hhhhheeeecccccHHHHHHHHhhcCC--C--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccc
Confidence 553 232 233455567889999999988776532 1 33333222223333333 44555555555444
Q ss_pred CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008249 431 GVSSNVF-TFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITY 509 (572)
Q Consensus 431 ~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 509 (572)
+..-|.. --.++..++.-..++++.+.++..+..-=..-|...| .+..+.+..|++.+|.++|-+.....++.+..-.
T Consensus 353 a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~ 431 (557)
T KOG3785|consen 353 ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYK 431 (557)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHH
Confidence 4332221 1233444455556778888888777765333344444 4678888889999999988777654344333444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHH-HHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 510 TELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIP-FRILKKRYRRMKESDKARDIHQKW 567 (572)
Q Consensus 510 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~ 567 (572)
..|.++|.+.++++-|..++-++.. +.+..+ ...+.+-|.+.+.+--|-+.|+.+
T Consensus 432 s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 432 SMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred HHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 5677888888888887766554432 223333 334455677778776666666554
No 68
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.34 E-value=1.6e-09 Score=108.80 Aligned_cols=256 Identities=15% Similarity=0.097 Sum_probs=155.7
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 008249 139 WLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNG 218 (572)
Q Consensus 139 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 218 (572)
.++..+...|+.|+.+||..+|..||..|+.+.|- +|.-|.-.....+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35567778899999999999999999999999998 8888877777778889999999999998887775
Q ss_pred CCCCHhHHHHHHHHHHhCCChhH---HHHHHHHHHh----CCCCCCCccHHH-------------HHHHHHHHHhcCCHH
Q 008249 219 IRPNRVTHNILVHALCKKGLLGD---AVKFLGEVLA----DDDGKATSDVIT-------------STILMDSYFKNGDKF 278 (572)
Q Consensus 219 ~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~----~~~~~~~~~~~~-------------~~~l~~~~~~~g~~~ 278 (572)
.|.+.||..|..+|...|++.. ..+.+..+.. .|... +.... -.+.+....-.|-++
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs--~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGS--PERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCc--HHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 6889999999999999998754 3332222221 12111 11111 112222333344444
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008249 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLS 358 (572)
Q Consensus 279 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 358 (572)
.+++++..+......- +. ...++-+.... ....++........-.|+..+|..+++.-...|+++.|..++..|.
T Consensus 157 qllkll~~~Pvsa~~~-p~--~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNA-PF--QVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHHhhCCcccccc-hH--HHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 4444444443221100 00 01133222222 1222222222211114666667777776667777777777777777
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008249 359 KTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGD 416 (572)
Q Consensus 359 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 416 (572)
+.|++.+..-|-.++-+ .++..-+..++.-|.+.|+.|+..|+...+..+...|.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 77766666555555444 56666666666667777777777776666655555444
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=7e-09 Score=103.65 Aligned_cols=130 Identities=18% Similarity=0.126 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008249 368 SYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAET 447 (572)
Q Consensus 368 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 447 (572)
++..+...|...|++++|++++++.+++.+. .+..|..-...+-..|++.+|...++..+..... |...-+..+..+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH
Confidence 4455566666777777777777777776533 4566677777777777777777777777765443 5566666666677
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHH--------HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 448 RGGSIFDAFSLKKEMLLDGIFPDVFTY--------NLLIGASCNLGHIHLALQLYDEMLR 499 (572)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~~~~p~~~~~--------~~li~~~~~~g~~~~A~~~~~~m~~ 499 (572)
++|++++|.+++....+.+..|-...+ .-...+|.+.|++..|++-|....+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777776655433322111 2345566777777777666655543
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.6e-10 Score=102.83 Aligned_cols=229 Identities=16% Similarity=0.112 Sum_probs=132.3
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH
Q 008249 192 NAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY 271 (572)
Q Consensus 192 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (572)
+.+.++|.+.|.+.+|.+.++.-+.. .|-+.||..|-++|.+..++..|+.++.+-++..+ .++.....+.+.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP----~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP----FDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC----chhhhhhhhHHHH
Confidence 34556666666666666666665543 44555666666666666666666666666665443 5555555566666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 008249 272 FKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEAS 351 (572)
Q Consensus 272 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 351 (572)
-..++.++|.++++...+.. +.++.....+..+|.-.++++-|+.+|+++...|+. +...|+.+.-+|.-.+++|.++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 66666666666666665543 344555555555566666666666666666666544 4455555555666666666666
Q ss_pred HHHHHHHhCCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 352 HFYGVLSKTGVAPD--QISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (572)
Q Consensus 352 ~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 429 (572)
--|.+....--.|+ ..+|..+.......||+.-|.+.|+-.+..+.. ....++.|.-.-.+.|++++|..++.....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 66655554332232 234555555555556666666666655554433 444555555555566666666666655544
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.6e-07 Score=90.78 Aligned_cols=415 Identities=16% Similarity=0.168 Sum_probs=238.8
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH--HHHHH
Q 008249 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNA--FITGY 198 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--li~~~ 198 (572)
.-+=++.+...|++++|.+....++..+ +.+...+..-+.++.+.+++++|+.+.+.-.. ..+++. +=.+|
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAY 87 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHH
Confidence 3445667788899999999999988865 66677788888888889999999866554321 112222 23444
Q ss_pred H--hcCCHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC
Q 008249 199 C--RVNELDKALHLFSTMANNGIRPN-RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (572)
Q Consensus 199 ~--~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (572)
| +.++.++|+..++ |..++ ..+...-...+.+.|++++|..+|+.+.+++... .+...-..++..-.
T Consensus 88 c~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd--~d~~~r~nl~a~~a--- 157 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD--QDEERRANLLAVAA--- 157 (652)
T ss_pred HHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHH---
Confidence 4 6788999988887 33333 3366666777888999999999999998866522 22222222222211
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHhCCCHHHHHHHHHHHHHCC-------------CCCCHh-HHHHHH
Q 008249 276 DKFQALALWNDMFQKNIQTDIVAYNVLI---NGFCLNGDISSAFAYFCQMLKRG-------------FLPDVI-TYNTLL 338 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~g-------------~~p~~~-~~~~ll 338 (572)
+... +.+......| ..+|..+. -.+...|++.+|+++++...+.+ +.-... .-..+.
T Consensus 158 ----~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 158 ----ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA 231 (652)
T ss_pred ----hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 1111 0111111122 23444433 34556788888888888773211 000111 112344
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHhh----HHHHHHHHHHc-----------------------------------
Q 008249 339 NCLCKQGKLDEASHFYGVLSKTGVAPDQIS----YKTIIQGLCIH----------------------------------- 379 (572)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~~~~----------------------------------- 379 (572)
..+-..|+.++|..++...++... +|... -|.++..-...
T Consensus 232 yVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 232 YVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred HHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 556778888888888888877643 33321 12221110000
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008249 380 ----------GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR--CGDLSNAFSIRDLMLSFGVSSNVFTFNALILAET 447 (572)
Q Consensus 380 ----------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 447 (572)
+..+.+.++.... .+..|. ..+..++..+.+ ...+.++..++...-+....-.....-.++....
T Consensus 311 ~N~~lL~l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 311 RNNALLALFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 0001111111000 011222 223333333322 2245666666666655433333455566667778
Q ss_pred hcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHH
Q 008249 448 RGGSIFDAFSLKK--------EMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRR--GITPD----IITYTELI 513 (572)
Q Consensus 448 ~~g~~~~a~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~~~~~l~ 513 (572)
..|+++.|.+++. .+.+.+..|-. ...+...+.+.++-+.|..++++.+.. .-.+. ..++.-++
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 8899999999988 55554444444 445666677777777777777776541 01122 23344445
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 514 KGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQK 566 (572)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 566 (572)
..-.+.|+.++|..+++++.+.. ++|..+...++.+|++.. .++|..+-+.
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~k~ 516 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAESLSKK 516 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHHHhhc
Confidence 55567899999999999999863 567778888888888754 6666665443
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.33 E-value=1.5e-08 Score=101.24 Aligned_cols=130 Identities=15% Similarity=0.098 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008249 403 IWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASC 482 (572)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 482 (572)
++..+...|...|++++|....+..++..+. .+..|..-...+-+.|++.+|.+.++.....+.. |...-+-.+..+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH
Confidence 4466778888999999999999999886433 4778888899999999999999999999987654 7777777888899
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 483 NLGHIHLALQLYDEMLRRGITPDII------TY--TELIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~g~~p~~~------~~--~~l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
++|++++|.+++....+.+..|-.. .| .....+|.+.|++..|.+.|....+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999998776433321 23 4457789999999999887776654
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=3.1e-08 Score=89.54 Aligned_cols=389 Identities=13% Similarity=0.109 Sum_probs=247.4
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
.++...+..|...+.-.|++.+|.++-.... .++..-..|.+.-.+.|+-++-...-+.+.+ ...---+|
T Consensus 88 ~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSL 157 (557)
T KOG3785|consen 88 DAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSL 157 (557)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhH
Confidence 5666777778777777899999988866543 3444455566777788887777666665533 22333455
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHH-HHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh
Q 008249 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNI-LVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (572)
.+..-..-.+++|+++|.+.... .|+-...+. +.-+|.+..-++-+.++++-.+++.+ .++.+.|..+....+
T Consensus 158 AsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p----dStiA~NLkacn~fR 231 (557)
T KOG3785|consen 158 ASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP----DSTIAKNLKACNLFR 231 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC----CcHHHHHHHHHHHhh
Confidence 66665666889999999999875 345555554 44577889999999999999998665 777888887777776
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH
Q 008249 274 NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN-----GDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLD 348 (572)
Q Consensus 274 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 348 (572)
.=.-..|.+-..++.+.+-.. | -.+.-.++. .+-+.|++++-.+.+. .|.. -..++-.|.+.+++.
T Consensus 232 l~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVq 302 (557)
T KOG3785|consen 232 LINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQ 302 (557)
T ss_pred hhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHH
Confidence 544445555556665543111 1 122223332 3557888888777664 3332 234555788999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHH-----HHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 008249 349 EASHFYGVLSKTGVAPDQISYKTIIQG-----LCIHGDIVKAREFLLSMLEKSVVPEPH-IWNVIIDGYGRCGDLSNAFS 422 (572)
Q Consensus 349 ~A~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~ 422 (572)
+|..+.+++... .|-......++.+ ........-|.+.|+-.-+.+..-|.. --..+.+.+.-..++++...
T Consensus 303 eA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~ 380 (557)
T KOG3785|consen 303 EAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLT 380 (557)
T ss_pred HHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 999988776432 2332222222221 111223455666666555544332222 23445556666678888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008249 423 IRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTY-NLLIGASCNLGHIHLALQLYDEMLRRG 501 (572)
Q Consensus 423 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g 501 (572)
.+..+...-...|...| .+.++++..|.+.+|+++|-.+....++ |..+| ..|.++|.+.++++.|..++-.+..
T Consensus 381 YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t-- 456 (557)
T KOG3785|consen 381 YLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT-- 456 (557)
T ss_pred HHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC--
Confidence 88888776544444444 4677888889999999988777655444 44555 4566788888999888777655532
Q ss_pred CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 502 ITPDIITY-TELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 502 ~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+.+..+. ..+..-|-+.+.+=-|.+.|+.+...
T Consensus 457 -~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 457 -PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 2333333 34455677777777777777777665
No 74
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.3e-11 Score=81.71 Aligned_cols=49 Identities=53% Similarity=0.930 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008249 469 PDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHC 517 (572)
Q Consensus 469 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 517 (572)
||..+||+++++|++.|++++|.++|++|.+.|++||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 75
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.1e-11 Score=82.10 Aligned_cols=50 Identities=38% Similarity=0.567 Sum_probs=41.6
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 008249 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCK 165 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 165 (572)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.26 E-value=7.6e-09 Score=88.22 Aligned_cols=206 Identities=18% Similarity=0.128 Sum_probs=161.1
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYC 199 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 199 (572)
+...|.-.|.+.|++..|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++.....| .+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 56677778889999999999999988874 44567888888889999999999999998888776 47778888888889
Q ss_pred hcCCHhHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHH
Q 008249 200 RVNELDKALHLFSTMANNGI-RPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (572)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (572)
..|++++|.+.|++....-. .--..+|..+.-+..+.|+.+.|...|++.++..+ ....+.-.+.....+.|++-
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp----~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP----QFPPALLELARLHYKAGDYA 190 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc----CCChHHHHHHHHHHhcccch
Confidence 99999999999988876532 22356788888888888999999999998888776 55566677788888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHH
Q 008249 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITY 334 (572)
Q Consensus 279 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 334 (572)
.|...++.....+. ++..+.-..|+.--..|+.+.+.++=..+.+. -|...-|
T Consensus 191 ~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 191 PARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 88888888877764 77788777788877888887777766666554 3444433
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=4.7e-07 Score=83.77 Aligned_cols=306 Identities=14% Similarity=0.059 Sum_probs=188.3
Q ss_pred CCCCHhHHHHHHHHHHh--CCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008249 219 IRPNRVTHNILVHALCK--KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDI 296 (572)
Q Consensus 219 ~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 296 (572)
++|...+....+.+++. .++-..|...+-.+.... ..+.|+.....+..++...|+.++|+..|+.....+ +-+.
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~--~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i 266 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNT--TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNV 266 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhc--cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhh
Confidence 44444444444444433 344444444433333222 233778888888888888888888888888776542 1222
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 008249 297 VAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGL 376 (572)
Q Consensus 297 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 376 (572)
.........+.+.|+.+....+...+.... .-+...|..-+.......+++.|+.+-+..++.. +.+...+-.-...+
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL 344 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLL 344 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHH
Confidence 222223334456777777777666665431 1122223333334445667777777777776653 22444454445566
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHH
Q 008249 377 CIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALI-LAET-RGGSIFD 454 (572)
Q Consensus 377 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll-~~~~-~~g~~~~ 454 (572)
...+++++|.-.|+......+. +..+|..|+..|...|++.+|...-+...+. ++.+..+...+. ..+. ....-++
T Consensus 345 ~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred HhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHH
Confidence 7778888888888877665432 6677888888888888888887766655443 222444544442 2222 2223467
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 455 AFSLKKEMLLDGIFPD-VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQ 533 (572)
Q Consensus 455 a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 533 (572)
|.++++.-.. +.|+ ....+.+...+...|+.++++.++++... ..||....+.|...+...+.+.+|++.|..+.
T Consensus 423 AKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 423 AKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7777777665 3555 34556666777788888888888888776 36788888888888888888888888888877
Q ss_pred Hc
Q 008249 534 TL 535 (572)
Q Consensus 534 ~~ 535 (572)
+.
T Consensus 499 r~ 500 (564)
T KOG1174|consen 499 RQ 500 (564)
T ss_pred hc
Confidence 65
No 78
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.4e-08 Score=93.66 Aligned_cols=411 Identities=16% Similarity=0.079 Sum_probs=215.8
Q ss_pred HHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 008249 125 IRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNEL 204 (572)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 204 (572)
.++.+..|+++.|+..|.+.+... ++|.+.|..-..+|.+.|++++|++=-.+-.+..|. -...|+....++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccH
Confidence 456677889999999998888774 557788888888888889988887766666666553 356788888888888899
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC-HHHHHHH
Q 008249 205 DKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD-KFQALAL 283 (572)
Q Consensus 205 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~ 283 (572)
++|+.-|.+-++.. +.+...++.+..++ ..+.+. + .- . .++..|..+..--...+- .+.+...
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~-----~--~~--~--~~p~~~~~l~~~p~t~~~~~~~~~~~ 150 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAA-----D--QL--F--TKPYFHEKLANLPLTNYSLSDPAYVK 150 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHh-----h--hh--c--cCcHHHHHhhcChhhhhhhccHHHHH
Confidence 99988888877652 22445566666665 111111 0 00 1 222233322221111110 0111111
Q ss_pred HHHHHhCCCCCCHHHHH---HHHHHHHhCCCHHH-HHHHHHHHH-HCCCCC----------------------CHhHHHH
Q 008249 284 WNDMFQKNIQTDIVAYN---VLINGFCLNGDISS-AFAYFCQML-KRGFLP----------------------DVITYNT 336 (572)
Q Consensus 284 ~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~-a~~~~~~m~-~~g~~p----------------------~~~~~~~ 336 (572)
.-+..+.+ +.+...|. .++.+.......+. .+..-..+. ..+..| -..-...
T Consensus 151 ~l~~~~~~-p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 151 ILEIIQKN-PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred HHHHhhcC-cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence 11111111 11111110 01111110000000 000000000 000111 0112345
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------HHH
Q 008249 337 LLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNV-------IID 409 (572)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------li~ 409 (572)
+.+...+..+++.|.+-+....... -+..-++....+|...|.+.+......+..+.|-. ...-|+. +..
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhh
Confidence 6677777788888888888887754 45566677777888888888777777776666533 2222333 334
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHH
Q 008249 410 GYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDV-FTYNLLIGASCNLGHIH 488 (572)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~ 488 (572)
+|.+.++++.+...|.+.......|+..+ +....+++....+...-. .|.. .-...=.+.+.+.|++.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHH
Confidence 56667788888888887665444443222 122233333333322221 1221 11111144455566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 489 LALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI-DHIPFRILKKRYRRMKESDKARDIHQKW 567 (572)
Q Consensus 489 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 567 (572)
.|+..|.+++... |-|...|....-+|.+.|.+..|..-.+...+. .| ....|.-=+.++....++++|.+.|++.
T Consensus 376 ~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 376 EAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666553 445556666666666666666666665555554 22 2233444444555555666666666666
Q ss_pred HhcC
Q 008249 568 LLRN 571 (572)
Q Consensus 568 l~~~ 571 (572)
++.|
T Consensus 453 le~d 456 (539)
T KOG0548|consen 453 LELD 456 (539)
T ss_pred HhcC
Confidence 5544
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=4.9e-09 Score=103.40 Aligned_cols=241 Identities=17% Similarity=0.136 Sum_probs=165.9
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHhhC-----CC-CCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHC-----C-
Q 008249 152 DVLTHNYLVNELCKIGDLEKADHVIREMSEM-----RP-SPNCA-TYNAFITGYCRVNELDKALHLFSTMANN-----G- 218 (572)
Q Consensus 152 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g- 218 (572)
-..+...+...|...|+++.|+.+++...+. |. .|.+. ..+.+...|...+++.+|..+|+++... |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456666888888888888888888877664 11 23333 3444777888888888888888888542 2
Q ss_pred CCC-CHhHHHHHHHHHHhCCChhHHHHHHHHHHhC-----CCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 008249 219 IRP-NRVTHNILVHALCKKGLLGDAVKFLGEVLAD-----DDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK-- 290 (572)
Q Consensus 219 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 290 (572)
..| -..+++.|..+|.+.|++++|...++.+.+. +. ..+.-...++.+...+...+++++|..++....+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 122 2346777778888888888888777766532 11 11123345677778888888888888888776542
Q ss_pred -CCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----C-CCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008249 291 -NIQ----TDIVAYNVLINGFCLNGDISSAFAYFCQMLKR-----G-FLP-DVITYNTLLNCLCKQGKLDEASHFYGVLS 358 (572)
Q Consensus 291 -~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 358 (572)
-.. --..+++.|...|.+.|++++|.+++++.+.. | ..+ ....++.+...|.+.+++.+|.++|.+..
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 111 12457888888899999999999998887643 1 122 24567778888888888888888887643
Q ss_pred h----CCC--CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008249 359 K----TGV--APDQISYKTIIQGLCIHGDIVKAREFLLSML 393 (572)
Q Consensus 359 ~----~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 393 (572)
. .|. +-...+|..|...|...|++++|.++.+.+.
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 221 2234678888999999999999998888776
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=1.6e-08 Score=99.93 Aligned_cols=243 Identities=21% Similarity=0.155 Sum_probs=118.8
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHHhC-----CCCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C
Q 008249 223 RVTHNILVHALCKKGLLGDAVKFLGEVLAD-----DDGKATSDVI-TSTILMDSYFKNGDKFQALALWNDMFQK-----N 291 (572)
Q Consensus 223 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~ 291 (572)
..+...+...|...|+++.|..+++..++. |... +.+. ..+.+...|...+++.+|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~h--l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKH--LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccC--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 345555777777888888888777777654 1101 2222 2333666667777777777777666542 1
Q ss_pred --CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CC-CCCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHhC--
Q 008249 292 --IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR-----GF-LPDV-ITYNTLLNCLCKQGKLDEASHFYGVLSKT-- 360 (572)
Q Consensus 292 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-- 360 (572)
.+.-..+++.|...|.+.|++++|...++...+- |. .|.+ ..++.+...++..+++++|..++....+.
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 1222345555566667777776666666554421 11 1111 12334444555555555555555433221
Q ss_pred -CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--C
Q 008249 361 -GVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF-----G--V 432 (572)
Q Consensus 361 -~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~--~ 432 (572)
-+.++. ..-..+++.|...|...|++++|.++++.+... | .
T Consensus 357 ~~~g~~~-------------------------------~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 357 DAPGEDN-------------------------------VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred hhccccc-------------------------------hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 001111 001223444444444455555554444443221 0 0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 433 SSNVFTFNALILAETRGGSIFDAFSLKKEMLL----DGI-FPD-VFTYNLLIGASCNLGHIHLALQLYDEML 498 (572)
Q Consensus 433 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (572)
.-....++.+...|.+.+.+++|.++|.+... .|+ .|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11123344444555555555555555444321 111 122 3455666666666666666666655554
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=2.6e-08 Score=85.00 Aligned_cols=199 Identities=18% Similarity=0.083 Sum_probs=155.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 008249 156 HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCK 235 (572)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 235 (572)
..-|.-.|...|+...|..-+++.++..| .+..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 34466678888888888888888888776 467788888888888888888888888888764 2256778888888888
Q ss_pred CCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 008249 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSA 315 (572)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 315 (572)
.|++++|...|++.+...... .-..+|..+.-+..+.|+.+.|.+.|++..+.. +-.+.+.-.+.....+.|++-.|
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~--~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYG--EPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCC--CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 888888888888888765322 455678888888888888888888888888775 44556677777888888888888
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008249 316 FAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (572)
Q Consensus 316 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 360 (572)
...++.....+. ++..+.-..|+.--+.|+.+.+.++=.++.+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888888777754 77777777788888888888877776666654
No 82
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=1.4e-07 Score=83.34 Aligned_cols=353 Identities=13% Similarity=0.100 Sum_probs=212.8
Q ss_pred HhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH-HHHH
Q 008249 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNA-FITG 197 (572)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~ 197 (572)
--+++.+..+.+..++.+|++++..-.++. +.+......|..+|-...++..|-..++.+....|+ ..-|.. -...
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~--~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE--LEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH--HHHHHHHHHHH
Confidence 346778888888999999999988877763 237777888888999999999999999998876543 333322 2345
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHH--HHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC
Q 008249 198 YCRVNELDKALHLFSTMANNGIRPNRVTHNILVH--ALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG 275 (572)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 275 (572)
+-+.+.+..|+.+...|.+. |+...-..-+. .....+++..+..++++.... .+..+.+.......+.|
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e------n~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE------NEADGQINLGCLLYKEG 158 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC------Cccchhccchheeeccc
Confidence 56788999999999888652 33322222222 234568888888888877542 34455666777778999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhH----HHHHHHHHHHcCCHHHHH
Q 008249 276 DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVIT----YNTLLNCLCKQGKLDEAS 351 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~g~~~~A~ 351 (572)
++++|.+-|+...+-+.--....|+..+.. .+.|+++.|+++..+++++|++..+.. -.-.++. ...|+. .
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~ 233 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---L 233 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---H
Confidence 999999999998886544556677766544 467899999999999999887632110 0000000 000000 0
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 352 HFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKS-VVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF 430 (572)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 430 (572)
.+. ..+ =...+|.-...+.+.|+++.|.+.+.+|.-+. ...|++|...+.-.- ..+++.+..+-+.-+...
T Consensus 234 ~lh----~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 234 VLH----QSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ 305 (459)
T ss_pred HHH----HHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc
Confidence 000 000 01223333444566777888877777775432 334666655443221 234444444444445454
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 008249 431 GVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGI-FPDVFTYNLLIGASC-NLGHIHLALQLYDEML 498 (572)
Q Consensus 431 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~ 498 (572)
++ -...||..++-.||+..-++.|-+++.+-..... -.+...|+ |++++. ..-.+++|.+-++.+.
T Consensus 306 nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 306 NP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred CC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 44 3456777777778887777777777654322110 11233333 233333 3345566655554443
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=3.4e-08 Score=93.51 Aligned_cols=94 Identities=15% Similarity=-0.025 Sum_probs=46.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008249 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLING 305 (572)
Q Consensus 226 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 305 (572)
|..+...+...|+.++|...|++.++..+ .+...|+.+...+...|++++|.+.|++..+.. +-+..+|..+...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P----~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~ 141 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRP----DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 44444444555555555555555555443 444555555555555555555555555554432 2233444444444
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 008249 306 FCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~ 324 (572)
+...|++++|.+.|+...+
T Consensus 142 l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555444
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=4.6e-08 Score=92.59 Aligned_cols=122 Identities=15% Similarity=0.001 Sum_probs=68.7
Q ss_pred CCChhhHHHHHHHHHhCC-CCC--ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 008249 131 GGKIGTALWLRRKMIQKG-TVP--DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKA 207 (572)
Q Consensus 131 ~g~~~~A~~~~~~m~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 207 (572)
.++.+.++.-+.+++... ..| ....|..+...|.+.|+.++|...|++..+..| .+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 355556666666665432 111 123455555566666666666666666666554 3455666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 008249 208 LHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 208 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
.+.|++..+... -+..++..+..++...|++++|.+.|+..++..+
T Consensus 118 ~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P 163 (296)
T PRK11189 118 YEAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP 163 (296)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 666666655321 1344555555556666666666666666665543
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.16 E-value=4.1e-07 Score=89.47 Aligned_cols=199 Identities=11% Similarity=-0.017 Sum_probs=99.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHH
Q 008249 370 KTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGV-SSNV--FTFNALILAE 446 (572)
Q Consensus 370 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~--~~~~~ll~~~ 446 (572)
..+...+...|++++|.+.+++..+..+. +...+..+...+...|++++|...+++...... .|+. ..|..+...+
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 34444555666666666666666665433 445555666666666666666666666554322 1221 2344555666
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHHCCCC--CCHHHHHHHHHHHHh
Q 008249 447 TRGGSIFDAFSLKKEMLLDGI-FPDVFTY-N--LLIGASCNLGHIHLALQL--YDEMLRRGIT--PDIITYTELIKGHCA 518 (572)
Q Consensus 447 ~~~g~~~~a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~~~A~~~--~~~m~~~g~~--p~~~~~~~l~~~~~~ 518 (572)
...|++++|..++++...... .+..... + .++.-+...|....+.+. +........+ ...........++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 666777777776666543221 1111111 1 222222333332222222 1111110001 111222345666777
Q ss_pred cCCHHHHHHHHHHHHHcCCC-------C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 519 RGNMKEAEEVFAKIQTLGLA-------I-DHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 519 ~g~~~~A~~~~~~m~~~g~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
.|+.++|.++++.+...... . ..........++...|++++|.+.+.+.+.
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78888888888777653211 0 111122233345578888888888877764
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.15 E-value=7.5e-07 Score=88.98 Aligned_cols=432 Identities=15% Similarity=0.060 Sum_probs=265.5
Q ss_pred CchhHHHHHHHHHHHhHHHHHHHHhcCCC-CCCCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC-hhhHHHH
Q 008249 82 NPQAVFNALDLILKENLDRLKTMRDTGPV-RCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD-VLTHNYL 159 (572)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l 159 (572)
+.+.+|..|.-.+.. ++.+..+.+.|.+ .+++-.....|+.+-..|.-.|.-..|+.+.+.-....-.|+ ...+-..
T Consensus 321 nd~ai~d~Lt~al~~-~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSR-CGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 345555554443321 2333333332221 124445667899999999999999999999988665432243 3333333
Q ss_pred HHHHHH-cCChhHHHHHHHHHhhCC----CCCCHHHHHHHHHHHHhc-----------CCHhHHHHHHHHHHHCCCCCCH
Q 008249 160 VNELCK-IGDLEKADHVIREMSEMR----PSPNCATYNAFITGYCRV-----------NELDKALHLFSTMANNGIRPNR 223 (572)
Q Consensus 160 i~~~~~-~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~ 223 (572)
-..|.+ .+.++++++.-.++.... .......|..+.-+|... ....++++.+++..+.+.. |+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cc
Confidence 344433 366777766666655511 112234454444444432 2246788889998776532 44
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008249 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI 303 (572)
Q Consensus 224 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 303 (572)
.....+.--|+..++++.|.+...+.++.++ . .+...|..|.-.+.-.+++.+|+.+.+.....- ..|......-+
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-~--~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~ 554 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNR-G--DSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKI 554 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-C--ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhh
Confidence 4444455567888999999999999999854 4 889999999999999999999999998877641 12222222223
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCC
Q 008249 304 NGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT--GVAPDQISYKTIIQGLCIHGD 381 (572)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~ 381 (572)
+.-...++.++++.....+..- .. +.. ..-..++-....+....+.-. ...-...++..+...... +
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~-we-~~~-------~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~ 623 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLAL-WE-AEY-------GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--Q 623 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHH-HH-hhh-------hHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--h
Confidence 3334467777777766665532 00 000 011111112222222222111 011112233332222211 1
Q ss_pred HHHHHHHHHHHHhCCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008249 382 IVKAREFLLSMLEKSVVP--E------PHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIF 453 (572)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~--~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 453 (572)
...+..-.. +...-..| + ...|......+.+.+..++|...+.+..... +.....|......+...|.++
T Consensus 624 ~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 624 LKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred hhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhH
Confidence 111000000 11111112 2 2245666777888889999987777776542 335667777777888899999
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008249 454 DAFSLKKEMLLDGIFPD-VFTYNLLIGASCNLGHIHLALQ--LYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFA 530 (572)
Q Consensus 454 ~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 530 (572)
+|.+.|...... .|+ ......+...+.+.|+..-|.. ++.++.+.+ +.+...|..+...+.+.|+.++|.+.|+
T Consensus 702 EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 702 EAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 999999988874 455 6678899999999999888888 999999875 6678999999999999999999999999
Q ss_pred HHHHc
Q 008249 531 KIQTL 535 (572)
Q Consensus 531 ~m~~~ 535 (572)
...+.
T Consensus 779 aa~qL 783 (799)
T KOG4162|consen 779 AALQL 783 (799)
T ss_pred HHHhh
Confidence 98876
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.14 E-value=6.8e-07 Score=87.93 Aligned_cols=198 Identities=16% Similarity=0.082 Sum_probs=93.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC--HHHHHHHHHHHHh
Q 008249 337 LLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVV-PE--PHIWNVIIDGYGR 413 (572)
Q Consensus 337 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~--~~~~~~li~~~~~ 413 (572)
+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.... |+ ...|..+...+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3344455555555555555555532 223344445555555555555555555555443211 11 1223345555556
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHhCCC--CCCHHHHHHHHHHHHhcC
Q 008249 414 CGDLSNAFSIRDLMLSFGV-SSNVFTF-N--ALILAETRGGSIFDAFSL--KKEMLLDGI--FPDVFTYNLLIGASCNLG 485 (572)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~-~p~~~~~-~--~ll~~~~~~g~~~~a~~~--~~~m~~~~~--~p~~~~~~~li~~~~~~g 485 (572)
.|++++|..+++....... .+..... + .++.-+...|....+.+. +........ ............++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 6666666666655543221 1111111 1 112222223322222221 111111000 111122224566677888
Q ss_pred CHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 486 HIHLALQLYDEMLRRGIT--------PDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 486 ~~~~A~~~~~~m~~~g~~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+.++|..+++.+...... ...........++...|+.++|.+.+......
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888653211 01222333444566889999999999888764
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=4.1e-07 Score=87.22 Aligned_cols=387 Identities=15% Similarity=0.049 Sum_probs=211.6
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD-VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNA 193 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 193 (572)
++|.+.|..=..+|...|++++|++=-.+-++. .|+ +..|.....++.-.|++++|+..|.+-++..+ .|...++.
T Consensus 33 p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~-~n~~L~~g 109 (539)
T KOG0548|consen 33 PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDP-SNKQLKTG 109 (539)
T ss_pred CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCC-chHHHHHh
Confidence 458889999999999999999998877666654 344 46899999999999999999999999988776 47777888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCC-ChhHHHHHHHHHHhCCCCCCCccHHHH---HHHHH
Q 008249 194 FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKG-LLGDAVKFLGEVLADDDGKATSDVITS---TILMD 269 (572)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~l~~ 269 (572)
+..++.. +.+. +.. --++..|..+..--.... ..+.+.....+.+..++ .++..| ..++.
T Consensus 110 l~~a~~~----~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p----~~l~~~l~d~r~m~ 173 (539)
T KOG0548|consen 110 LAQAYLE----DYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP----TSLKLYLNDPRLMK 173 (539)
T ss_pred HHHhhhH----HHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc----HhhhcccccHHHHH
Confidence 8777711 1111 110 011222221111000000 00111111111111111 111110 00111
Q ss_pred HHHhcCCHHH-HHHHHHHHHh-CCCC----------------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 270 SYFKNGDKFQ-ALALWNDMFQ-KNIQ----------------------TDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 270 ~~~~~g~~~~-A~~~~~~~~~-~~~~----------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
+.......+. ....-..+.. .+.. .-..-...+.+...+..+++.|++.+....+.
T Consensus 174 a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el 253 (539)
T KOG0548|consen 174 ADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL 253 (539)
T ss_pred HHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH
Confidence 1100000000 0000000000 0000 01122345666777777888888888887776
Q ss_pred CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHH-------HHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008249 326 GFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYK-------TIIQGLCIHGDIVKAREFLLSMLEKSVV 398 (572)
Q Consensus 326 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~li~~~~~~g~~~~A~~~~~~~~~~~~~ 398 (572)
. -+..-++....+|...|.+.+....-+...+.|.. ...-|+ .+..+|.+.++.+.++..|.+.+.....
T Consensus 254 ~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt 330 (539)
T KOG0548|consen 254 A--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT 330 (539)
T ss_pred h--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC
Confidence 3 35555566667778888777776666665555422 111222 2333556667788888888887665433
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008249 399 PEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLI 478 (572)
Q Consensus 399 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 478 (572)
|+. ..+....+++....+...-.++.. ..-...-...+.+.|++..|+..|.+++...+. |...|....
T Consensus 331 ~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRA 399 (539)
T KOG0548|consen 331 PDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRA 399 (539)
T ss_pred HHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHH
Confidence 322 122333444444444333322221 111112244566777777787777777776522 577777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 479 GASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
-+|.+.|.+..|++-.+..++.. ++....|..=..++....+++.|.+.|++.++.
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777777777777777766652 333455555555666666777777777777765
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=1.7e-07 Score=82.86 Aligned_cols=324 Identities=11% Similarity=0.012 Sum_probs=201.3
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHH-HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNY-LVNELCKIGDLEKADHVIREMSEMRPSPNCATYNA 193 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 193 (572)
+.+......|...|....++..|-..++.+-.. .|...-|.. -...+-+.+.+.+|+++...|.+. ++...-..
T Consensus 41 p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~l 115 (459)
T KOG4340|consen 41 PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVL 115 (459)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHH
Confidence 347778888999999999999999999998876 466665544 456778889999999999888653 22221111
Q ss_pred HHH--HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH
Q 008249 194 FIT--GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY 271 (572)
Q Consensus 194 li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (572)
-+. ..-..+++..+..+.++....| +..+.+...-...+.|+.+.|.+-|+...+.+. - .....||. .-+.
T Consensus 116 qLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG-y--qpllAYni-ALaH 188 (459)
T KOG4340|consen 116 QLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSG-Y--QPLLAYNL-ALAH 188 (459)
T ss_pred HHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcC-C--CchhHHHH-HHHH
Confidence 122 2335788999999988876433 455556666666799999999999999998775 2 33445554 4456
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 008249 272 FKNGDKFQALALWNDMFQKNIQTDIVA----YNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKL 347 (572)
Q Consensus 272 ~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 347 (572)
.+.|+.+.|++...+++++|++..+.. -.-.++.- ..|+. . .|..++ -+..+|.-...+.+.|++
T Consensus 189 y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~----~lh~Sa---l~eAfNLKaAIeyq~~n~ 257 (459)
T KOG4340|consen 189 YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---L----VLHQSA---LVEAFNLKAAIEYQLRNY 257 (459)
T ss_pred HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---H----HHHHHH---HHHHhhhhhhhhhhcccH
Confidence 678999999999999999986533221 00001000 00000 0 011110 122344445556788888
Q ss_pred HHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 348 DEASHFYGVLSKTG-VAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDL 426 (572)
Q Consensus 348 ~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 426 (572)
+.|.+.+-+|..+. ...|++|...+.-. -..+++.+..+-+.-+.+.++- ...||..++-.||+..-++.|-.++-+
T Consensus 258 eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 258 EAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 88888887775432 23455665444321 1245566666666667766654 466788888889998888888877654
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 427 MLSFGV-SSNVFTFNALILAETRGGSIFDAFSLKKEML 463 (572)
Q Consensus 427 ~~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 463 (572)
-...-. -.+...|+.|=......-..++|.+-+..+.
T Consensus 336 n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 336 NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 222111 0133344433222233445666666555443
No 90
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=2.7e-06 Score=82.56 Aligned_cols=393 Identities=14% Similarity=0.080 Sum_probs=228.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 008249 156 HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCK 235 (572)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 235 (572)
..+=++.+...|++++|.+...++...+| .+...+..-+-++.+.+++++|+.+.+.-... ..+..-+..-..+..+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~p-dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVP-DDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCC-CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHH
Confidence 33445667788999999999999999875 45666777777889999999999666543211 1111111223344558
Q ss_pred CCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hCCCHHH
Q 008249 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFC-LNGDISS 314 (572)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 314 (572)
.+..++|...++-+- . .+..+...-...+.+.|++++|+++|+.+.+.+. ++ +...+++-+ ..+-
T Consensus 92 lnk~Dealk~~~~~~-----~--~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd---~d~~~r~nl~a~~a--- 157 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLD-----R--LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DD---QDEERRANLLAVAA--- 157 (652)
T ss_pred cccHHHHHHHHhccc-----c--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-ch---HHHHHHHHHHHHHH---
Confidence 999999999998221 2 4555667777889999999999999999987753 22 222221111 1110
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHH---HHHHHcCCHHHHHHHHHHHHhCC-------CC------CCH-hhHHHHHHHHH
Q 008249 315 AFAYFCQMLKRGFLPDVITYNTLL---NCLCKQGKLDEASHFYGVLSKTG-------VA------PDQ-ISYKTIIQGLC 377 (572)
Q Consensus 315 a~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~g~~~~A~~~~~~~~~~~-------~~------~~~-~~~~~li~~~~ 377 (572)
+... ..+......| ..+|..+. -.+...|++.+|++++....+.+ -. .+. ..--.+.-.+-
T Consensus 158 ~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 158 ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 1111 1122222233 33444443 35567899999999999883221 01 011 11223444566
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCC----------------HHHH-----------------
Q 008249 378 IHGDIVKAREFLLSMLEKSVVPEPHIW----NVIIDGYGRCGD----------------LSNA----------------- 420 (572)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~----------------~~~A----------------- 420 (572)
..|+-.+|..++...++.++. |.... |-++..-....- .+.+
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred HhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999887654 32111 111111000000 0000
Q ss_pred ---------HHHHHHHHh-CCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008249 421 ---------FSIRDLMLS-FGVSSNVFTFNALILAET--RGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIH 488 (572)
Q Consensus 421 ---------~~~~~~~~~-~~~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 488 (572)
.++.+.... .+..|. ..+..++..+. +...+.++..++...-+....-.....-..+......|+++
T Consensus 315 lL~l~tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 315 LLALFTNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHHHhhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 001111111 112222 23333333322 22246677777777666533323455556677788899999
Q ss_pred HHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCChH----HHHHHHHHHHhc
Q 008249 489 LALQLYD--------EMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL--GLAIDHI----PFRILKKRYRRM 554 (572)
Q Consensus 489 ~A~~~~~--------~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~----~~~~l~~~~~~~ 554 (572)
.|.+++. ...+.+..| .+..++...+.+.++.+.|..++..+... .-.+... ++.-+...-.+.
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 9999999 444444334 44556777778888877787777776542 1112222 233333334467
Q ss_pred CCHHHHHHHHHHHHhcC
Q 008249 555 KESDKARDIHQKWLLRN 571 (572)
Q Consensus 555 g~~~~A~~~~~~~l~~~ 571 (572)
|+-++|..+++++++.+
T Consensus 472 G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFN 488 (652)
T ss_pred CchHHHHHHHHHHHHhC
Confidence 99999999999998865
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.03 E-value=3.8e-06 Score=93.65 Aligned_cols=340 Identities=14% Similarity=0.038 Sum_probs=214.1
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC---Cc--cHHHHHHHHHHH
Q 008249 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKA---TS--DVITSTILMDSY 271 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~--~~~~~~~l~~~~ 271 (572)
.+...|+++.+..+++.+.......+..........+...|+++++...+..+...-.... .+ .......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777766552211111222333444556678999999999988765321000 01 222333445566
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CC-CCCHhHHHHHHHHHH
Q 008249 272 FKNGDKFQALALWNDMFQKNIQTDI----VAYNVLINGFCLNGDISSAFAYFCQMLKR----GF-LPDVITYNTLLNCLC 342 (572)
Q Consensus 272 ~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~ll~~~~ 342 (572)
...|++++|...+++....-...+. ...+.+...+...|++++|...+.+.... |. .+...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 7899999999999988763111121 34455666778899999999999887643 11 111234556667788
Q ss_pred HcCCHHHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHH
Q 008249 343 KQGKLDEASHFYGVLSKT----GVA--P-DQISYKTIIQGLCIHGDIVKAREFLLSMLEKS--VVP--EPHIWNVIIDGY 411 (572)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~ 411 (572)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999988776542 211 1 22334455666777899999999988876531 111 233455566677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHH
Q 008249 412 GRCGDLSNAFSIRDLMLSFGVS-SNVFTF-----NALILAETRGGSIFDAFSLKKEMLLDGIFPDV---FTYNLLIGASC 482 (572)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~~~~-p~~~~~-----~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~ 482 (572)
...|+++.|...++........ .....+ ...+..+...|+.+.|...+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8899999999988887542110 011111 11224445678999999888775542211111 11345677788
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008249 483 NLGHIHLALQLYDEMLRR----GITPD-IITYTELIKGHCARGNMKEAEEVFAKIQTLG 536 (572)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 536 (572)
..|++++|...+++.... |..++ ..+...+..++.+.|+.++|.+.+.++.+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999988753 33322 2466777888999999999999999998763
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.01 E-value=1.1e-06 Score=87.05 Aligned_cols=216 Identities=19% Similarity=0.171 Sum_probs=124.8
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHH
Q 008249 305 GFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVK 384 (572)
Q Consensus 305 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 384 (572)
.+...|+++.|...|-+... ....+.+......+.+|..+++.+.... .-..-|..+.+.|...|+++.
T Consensus 715 hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHH
Confidence 34445555555555533221 1223445556667777777777666542 223445666677777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 385 AREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLL 464 (572)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 464 (572)
|.++|.+.- .++-.|.+|.+.|+++.|.++-++.. |+......|-.-..-.-+.|++.+|.++|-...
T Consensus 784 ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~- 851 (1636)
T KOG3616|consen 784 AEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG- 851 (1636)
T ss_pred HHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-
Confidence 777775532 25556777777777777777665543 333344555555555666777777777664332
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHH
Q 008249 465 DGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPF 544 (572)
Q Consensus 465 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 544 (572)
.|+ ..|..|-+.|..+..+++.++-.- ..-..|...+..-|-..|+...|.+.|-+... |
T Consensus 852 ---~p~-----~aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~ 911 (1636)
T KOG3616|consen 852 ---EPD-----KAIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------F 911 (1636)
T ss_pred ---Cch-----HHHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------H
Confidence 244 235566677777777666655321 11124555666666677777777666654433 4
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 008249 545 RILKKRYRRMKESDKARDI 563 (572)
Q Consensus 545 ~~l~~~~~~~g~~~~A~~~ 563 (572)
.+-++.|..++.|++|.++
T Consensus 912 kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 912 KAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHHHHhhhhhhHHHHHHH
Confidence 4455555555555555544
No 93
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.01 E-value=3.1e-05 Score=74.60 Aligned_cols=135 Identities=9% Similarity=0.069 Sum_probs=91.5
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
+-|..+|+.||+-+..+ .+++++..++++... .+-.+..|..-|..-.+.++++..+.+|.+.+..- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 56889999999977665 999999999999875 35566788999999999999999999999987643 467778777
Q ss_pred HHHHHhc-CCHh----HHHHHHHHH-HHCCCCCC-HhHHHHHHHHH---------HhCCChhHHHHHHHHHHhCC
Q 008249 195 ITGYCRV-NELD----KALHLFSTM-ANNGIRPN-RVTHNILVHAL---------CKKGLLGDAVKFLGEVLADD 253 (572)
Q Consensus 195 i~~~~~~-g~~~----~A~~~~~~m-~~~g~~p~-~~~~~~ll~~~---------~~~g~~~~a~~~~~~~~~~~ 253 (572)
++.--+. |+.. ...+.|+-. .+.|+.+- ...|+..+..+ ....+++...+++.+++...
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 7654432 2222 233334433 33454432 23355444433 23345666777888877644
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.00 E-value=5.1e-06 Score=92.62 Aligned_cols=336 Identities=12% Similarity=-0.030 Sum_probs=212.9
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------CCC--HHHHHHHH
Q 008249 232 ALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNI------QTD--IVAYNVLI 303 (572)
Q Consensus 232 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~--~~~~~~li 303 (572)
.....|+++.+...++.+..... . .+..........+...|+++++...+......-- .+. ......+.
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~-~--~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVL-L--ENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHH-h--cCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 34456777777777665421110 1 1222234455566788999999999987754310 111 11222233
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHhhHHHHHH
Q 008249 304 NGFCLNGDISSAFAYFCQMLKRGFLPDV----ITYNTLLNCLCKQGKLDEASHFYGVLSKT----GVA-PDQISYKTIIQ 374 (572)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~ 374 (572)
..+...|++++|...+++..+.-...+. ...+.+...+...|++++|...+.+.... |.. ....++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 4566789999999999988763111121 23455666778899999999998887643 111 11234556667
Q ss_pred HHHHcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHH
Q 008249 375 GLCIHGDIVKAREFLLSMLEK----SVV--P-EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSF----GVSSNVFTFNALI 443 (572)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~ll 443 (572)
.+...|++++|...+++.... +.. + ....+..+...+...|++++|...+++.... +.......+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 788899999999998887652 211 1 2233445566677889999999998877542 2111233455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC--CCCCHH--HH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 008249 444 LAETRGGSIFDAFSLKKEMLLDG--IFPDVF--TY--NLLIGASCNLGHIHLALQLYDEMLRRGITPD---IITYTELIK 514 (572)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~--~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~ 514 (572)
..+...|++++|.+.+....... ...... .. ...+..+...|+.+.|...+........... ...+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 67888999999999988875421 111111 10 1122444568999999999877654211111 112456778
Q ss_pred HHHhcCCHHHHHHHHHHHHHc----CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008249 515 GHCARGNMKEAEEVFAKIQTL----GLAID-HIPFRILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 515 ~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
++...|+.++|...++++... |..++ ..+...+..++.+.|+.++|.+.+.+.++.
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888999999999999988763 33322 235667778899999999999999998764
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.97 E-value=2.5e-06 Score=87.56 Aligned_cols=185 Identities=14% Similarity=0.051 Sum_probs=122.5
Q ss_pred ChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 008249 133 KIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFS 212 (572)
Q Consensus 133 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 212 (572)
+...|+..|-+..+... .=...|..|...|+..-+...|.+.|++..+.++ .+...+......|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 35666666655555421 1234677888888877788888888888888765 467778888888888888888888743
Q ss_pred HHHHCCC-CCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008249 213 TMANNGI-RPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN 291 (572)
Q Consensus 213 ~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 291 (572)
..-+... ..-...|....-.|.+.++..+|..-|+..++..| .|...|..++.+|...|++..|+++|.+.....
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP----kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP----KDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc----hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 3322210 00112233344456677888888888888888766 788888888888888888888888888777653
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008249 292 IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 292 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 324 (572)
+.+...--...-.-+..|.+.+++..+.....
T Consensus 627 -P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 -PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22222222233345567777777777766543
No 96
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=8.6e-05 Score=76.68 Aligned_cols=383 Identities=14% Similarity=0.111 Sum_probs=259.9
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKG--TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
|+..-...+.++...+-+.+-+++++++.-.. +..+...-|.|+-.-.+. +..+..+.++++...+. |+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-PD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-hh------H
Confidence 44555667778888888888888888776432 122333444455444443 34455556666544332 33 2
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc
Q 008249 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (572)
.......+-+++|..+|++.. .+......|+. ..+.++.|.++-++. ..+.+|..+..+-.+.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~---------n~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC---------NEPAVWSQLAKAQLQG 1117 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh---------CChHHHHHHHHHHHhc
Confidence 344556677888888887753 35555666654 346667777776655 5567899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 008249 275 GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFY 354 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 354 (572)
|.+.+|++-|-+. .|+..|..+++...+.|.+++-.+++....+..-.|.+. ..++-+|++.++..+.++++
T Consensus 1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 9999998877554 377889999999999999999999887777665566554 46788899999988776654
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008249 355 GVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSS 434 (572)
Q Consensus 355 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 434 (572)
.-|+......+.+-|...+.++.|.-++... ..|..|...+...|++..|...-++. .
T Consensus 1190 -------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------n 1247 (1666)
T KOG0985|consen 1190 -------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------N 1247 (1666)
T ss_pred -------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------c
Confidence 3478888888888899999998887777543 45888888899999999888765543 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008249 435 NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIK 514 (572)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 514 (572)
+..||-.+-.+|...+.+.-| +|...++.....-..-|+..|-..|-+++-+.+++...... +.....|+-|.-
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELai 1321 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAI 1321 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHH
Confidence 667888888888877766543 34333344456667788899999999999998887765321 234456777776
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-CCC------CChHHHHHHHHHHHhcCCHHHHH
Q 008249 515 GHCARGNMKEAEEVFAKIQTL-GLA------IDHIPFRILKKRYRRMKESDKAR 561 (572)
Q Consensus 515 ~~~~~g~~~~A~~~~~~m~~~-g~~------p~~~~~~~l~~~~~~~g~~~~A~ 561 (572)
.|.+- ++++..+.++-.... +++ .....|.-++-.|.+-..+|.|.
T Consensus 1322 LYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1322 LYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 66655 466666666655443 111 01223555665666655555543
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.93 E-value=1.5e-05 Score=72.22 Aligned_cols=305 Identities=12% Similarity=0.061 Sum_probs=203.4
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHH-HHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCA-TYNA 193 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ 193 (572)
+.++.-..-+...+...|++.+|+.-|...++.. +.+-.++..-...|...|+...|+.=+.++++.. ||-. +-..
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--pDF~~ARiQ 111 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--PDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--ccHHHHHHH
Confidence 3466667778889999999999999999888752 2223344444567888899999999999988854 5533 2223
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HhH------------HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCc
Q 008249 194 FITGYCRVNELDKALHLFSTMANNGIRPN--RVT------------HNILVHALCKKGLLGDAVKFLGEVLADDDGKATS 259 (572)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~------------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 259 (572)
-...+.+.|++++|..=|+..++....-+ ... ....+..+...|+...|+.....+++..+ .
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~----W 187 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP----W 187 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc----c
Confidence 34567899999999999999987642111 111 22334455678899999999999998766 8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHH----
Q 008249 260 DVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYN---- 335 (572)
Q Consensus 260 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~---- 335 (572)
+...|..-..+|...|++..|+.-++...+.. ..+..++..+-..+...|+.+.++...++..+. .||...+-
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK 264 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK 264 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH
Confidence 88899999999999999999988887776654 456677777778888899999999988888875 55543221
Q ss_pred HH---------HHHHHHcCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008249 336 TL---------LNCLCKQGKLDEASHFYGVLSKTGVAPDQ---ISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHI 403 (572)
Q Consensus 336 ~l---------l~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 403 (572)
.+ +......+++.++.+-.+...+....... ..+..+-.++...+++.+|++...++++.... |+.+
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~ 343 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQV 343 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHH
Confidence 11 11123344555555555555443222111 22333444555566666776666666654322 4556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 404 WNVIIDGYGRCGDLSNAFSIRDLMLSF 430 (572)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 430 (572)
+.--..+|.-...++.|+.-|+...+.
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 666666666666666666666666654
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.92 E-value=9.7e-08 Score=89.05 Aligned_cols=24 Identities=8% Similarity=-0.140 Sum_probs=9.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHH
Q 008249 300 NVLINGFCLNGDISSAFAYFCQML 323 (572)
Q Consensus 300 ~~li~~~~~~g~~~~a~~~~~~m~ 323 (572)
...+..|.+.++++.|.+.++.|.
T Consensus 135 al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 135 ALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444444444444444444443
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.90 E-value=4.9e-05 Score=69.10 Aligned_cols=317 Identities=18% Similarity=0.095 Sum_probs=170.3
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHH-HHH
Q 008249 152 DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHN-ILV 230 (572)
Q Consensus 152 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll 230 (572)
++.-..-+...+...|++.+|+.-|....+.+| .+-.++..-...|...|+-..|+.=+++.++. +||...-. .-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp-~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDP-NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 344445567778888999999999999887554 23334444556788889999999999998874 77754322 234
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008249 231 HALCKKGLLGDAVKFLGEVLADDDGKATSDVITST------------ILMDSYFKNGDKFQALALWNDMFQKNIQTDIVA 298 (572)
Q Consensus 231 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 298 (572)
..+.+.|.+++|..-|+.++...+.. ......+. ..+..+...|+...|++....+.+.. +-|...
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l 191 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASL 191 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHH
Confidence 56789999999999999999877521 11111111 11223333444444544444444432 333444
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 008249 299 YNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCI 378 (572)
Q Consensus 299 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 378 (572)
|..-..+|...|.+..|+.-++..-+.. ..+..++-.+-..+...|+.+.++...++..+. .||...+...-.
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK---- 264 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK---- 264 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH----
Confidence 4444444444555544444443333221 112333333344444444444444444444442 233322111100
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHH
Q 008249 379 HGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFT---FNALILAETRGGSIFDA 455 (572)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~ll~~~~~~g~~~~a 455 (572)
.+.+..+.++. +......+++.++.+..+...+..+...... +..+-.++...|++.+|
T Consensus 265 --klkKv~K~les----------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 265 --KLKKVVKSLES----------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred --HHHHHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 00001111111 1112344556666666666555443322222 23344555666777777
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008249 456 FSLKKEMLLDGIFPD-VFTYNLLIGASCNLGHIHLALQLYDEMLRR 500 (572)
Q Consensus 456 ~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (572)
++.-.+..+. .|| ..++.--..+|.-...++.|+.-|+...+.
T Consensus 327 iqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 327 IQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 7777766653 344 666666666777777777777777776664
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=1.4e-07 Score=88.02 Aligned_cols=257 Identities=17% Similarity=0.104 Sum_probs=165.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 008249 268 MDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKL 347 (572)
Q Consensus 268 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 347 (572)
++-+.-.|++..++.-.+ .....-..+......+.+++...|+++.++. ++.... .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccch
Confidence 345566899999887666 3322222334455667888999998776543 433333 66666665555444433444
Q ss_pred HHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 348 DEASHFYGVLSKTGVAP-DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDL 426 (572)
Q Consensus 348 ~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 426 (572)
+.+..-++........+ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555444443333222 2222223334455678999999887643 3667777888999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008249 427 MLSFGVSSNVFTFNALILAETR----GGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGI 502 (572)
Q Consensus 427 ~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 502 (572)
|.+.. .| .+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++++..+.+
T Consensus 157 ~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 157 MQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp HHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred HHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 98753 33 344445544432 34689999999998765 56788889999999999999999999999987653
Q ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCChH
Q 008249 503 TPDIITYTELIKGHCARGNM-KEAEEVFAKIQTLGLAIDHI 542 (572)
Q Consensus 503 ~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~ 542 (572)
+-+..+...++.+....|+. +.+.+++.++... .|+..
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h~ 270 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNHP 270 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTSH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCCh
Confidence 44567777788888888887 6778888888875 45543
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=5e-07 Score=87.44 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=61.2
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH
Q 008249 233 LCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDI 312 (572)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 312 (572)
+.+.|++.+|.-.|+..++.+| .+...|..|.......++-..|+..+.+..+.. +.+......|.-.|...|.-
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP----~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDP----QHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhCh----HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 4566777777777777777665 667777777777777777777777777777665 55666666666777777777
Q ss_pred HHHHHHHHHHHHC
Q 008249 313 SSAFAYFCQMLKR 325 (572)
Q Consensus 313 ~~a~~~~~~m~~~ 325 (572)
.+|+..++..+..
T Consensus 370 ~~Al~~L~~Wi~~ 382 (579)
T KOG1125|consen 370 NQALKMLDKWIRN 382 (579)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777766553
No 102
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.86 E-value=1.3e-05 Score=79.71 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHH-----HHHHHhcC-CHHHHHHHH
Q 008249 511 ELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRIL-----KKRYRRMK-ESDKARDIH 564 (572)
Q Consensus 511 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-----~~~~~~~g-~~~~A~~~~ 564 (572)
.+...+-..|++++|-+.+-+..+.+. -..||-.. -.-+.+.| +.++|.++|
T Consensus 1000 k~a~~ledegk~edaskhyveaiklnt--ynitwcqavpsrfd~e~ir~gnkpe~av~mf 1057 (1636)
T KOG3616|consen 1000 KLAMFLEDEGKFEDASKHYVEAIKLNT--YNITWCQAVPSRFDAEFIRAGNKPEEAVEMF 1057 (1636)
T ss_pred HHhhhhhhccchhhhhHhhHHHhhccc--ccchhhhcccchhhHHHHHcCCChHHHHHHh
Confidence 344455677888888777777776531 12233221 12245566 667777665
No 103
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=2.4e-05 Score=78.86 Aligned_cols=241 Identities=16% Similarity=0.131 Sum_probs=151.3
Q ss_pred CHHhHHHHHH--HHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCC---------CC
Q 008249 117 DYRRHVAVIR--DLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMR---------PS 185 (572)
Q Consensus 117 ~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~ 185 (572)
|..|-..+++ .|..-|+.+.|.+-.+.+. +...|..+...+.+.++++-|.-.+-.|.... -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4445555554 3566788888877766554 34568888888888777776655544442210 11
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHH
Q 008249 186 PNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITST 265 (572)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 265 (572)
++ .+=....-.....|..++|..+|.+-++ |..|=..|-..|.+++|.++-+.--.. .-..||.
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi------HLr~Tyy 862 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI------HLRNTYY 862 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce------ehhhhHH
Confidence 11 1112222334467888888888887764 233445567788888888776543221 2234566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH----------hCC---------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 008249 266 ILMDSYFKNGDKFQALALWNDMF----------QKN---------IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRG 326 (572)
Q Consensus 266 ~l~~~~~~~g~~~~A~~~~~~~~----------~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 326 (572)
....-+-..++.+.|++.|++.. ... -..|...|.-....+-..|+.+.|+.+|....+
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-- 940 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-- 940 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence 66666667778888877776532 111 012334444445555567788888887776553
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008249 327 FLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLE 394 (572)
Q Consensus 327 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 394 (572)
|-.+++..|-.|+.++|.++-++- -|......+...|-..|++.+|...|.+...
T Consensus 941 -------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 -------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred -------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 456677777888888888776543 2667777888899999999999988887653
No 104
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.81 E-value=3.2e-05 Score=79.73 Aligned_cols=165 Identities=12% Similarity=-0.034 Sum_probs=123.6
Q ss_pred HhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCC-CCHHHHHHHHHH
Q 008249 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPS-PNCATYNAFITG 197 (572)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~ 197 (572)
..|..|...|+...+...|.+.|+...+.+ .-+........+.|++..+++.|..+.-...+..+. .-...|....-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 478999999998889999999999988764 346677888999999999999998885554443321 112234445556
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCH
Q 008249 198 YCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDK 277 (572)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 277 (572)
|...++...|+.-|+...+..+ -|...|..+..+|...|++..|.+.|.++....| .+...-.-..-..+..|.+
T Consensus 572 yLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP----~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP----LSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc----HhHHHHHHHHHHHHHhhhH
Confidence 7778888999999988887543 3777888999999999999999999988887654 4444433444456778888
Q ss_pred HHHHHHHHHHHh
Q 008249 278 FQALALWNDMFQ 289 (572)
Q Consensus 278 ~~A~~~~~~~~~ 289 (572)
.+|+..+..+..
T Consensus 647 keald~l~~ii~ 658 (1238)
T KOG1127|consen 647 KEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHH
Confidence 888888887764
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=1.3e-06 Score=84.71 Aligned_cols=217 Identities=17% Similarity=0.121 Sum_probs=109.4
Q ss_pred HHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 008249 128 LCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKA 207 (572)
Q Consensus 128 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 207 (572)
+.+.|++.+|.-.|+...... |-+..+|..|.......++-..|+..+++..+..| .|......|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHHH
Confidence 455566666666666655543 33555666666666666666666666666666555 3555666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHH-----------HHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008249 208 LHLFSTMANNGIRPNRVTHNILV-----------HALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 208 ~~~~~~m~~~g~~p~~~~~~~ll-----------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
+..++..+...++ |..+. ..+.....+....++|-++....+.. .|..++..|.-.|.-.|+
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~--~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTK--IDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCC--CChhHHhhhHHHHhcchH
Confidence 6666655433210 00000 00111112223344444444433322 445555555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHH
Q 008249 277 KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPD-VITYNTLLNCLCKQGKLDEASHFYG 355 (572)
Q Consensus 277 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~ 355 (572)
+++|.+.|+..+... +-|...||.|...++...+.++|+.-|.+.++. +|+ +.....|.-+|...|.+++|.+.|-
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 555555555555543 334455555555555555555555555555543 333 1222233334555555555555444
Q ss_pred H
Q 008249 356 V 356 (572)
Q Consensus 356 ~ 356 (572)
.
T Consensus 523 ~ 523 (579)
T KOG1125|consen 523 E 523 (579)
T ss_pred H
Confidence 3
No 106
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=0.00022 Score=73.85 Aligned_cols=204 Identities=16% Similarity=0.122 Sum_probs=132.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 008249 295 DIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQ 374 (572)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 374 (572)
.+..|..+..+-.+.|.+.+|++-|-+. .|+..|..+++...+.|.+++-.+++....+..-.|.. =+.++-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHH
Confidence 3456777777777777777776655432 25666777777777777777777777666665444433 346677
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008249 375 GLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFD 454 (572)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 454 (572)
+|++.++..+..+++ ..|+......+.+-|...|.++.|.-+|. ++..|..|...+...|++..
T Consensus 1175 AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHH
Confidence 777777766554443 23566666777777777777777776665 44456677777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 455 AFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQ 533 (572)
Q Consensus 455 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 533 (572)
|.+.-++. -+..||.-+-.+|...+.+.-|. |....+.....-..-++.-|...|.+++.+.+++...
T Consensus 1239 AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1239 AVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 76665543 25667877777777766655442 2222233444556677778888888888777776554
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.77 E-value=5.7e-06 Score=87.89 Aligned_cols=188 Identities=14% Similarity=0.085 Sum_probs=89.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008249 335 NTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRC 414 (572)
Q Consensus 335 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 414 (572)
.++++.-..-|.-+...++|+++.+. .....+|..|...|.+.+..++|.++++.|.++-- .....|...+..+.+.
T Consensus 1501 iA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1501 IAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred HHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcc
Confidence 33333333334444444555544442 11223444555555555555555555555554321 2344455555555555
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008249 415 GDLSNAFSIRDLMLSFGVS-SNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQL 493 (572)
Q Consensus 415 g~~~~A~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 493 (572)
.+-+.|..++.+..+.-+. -........+..-.+.|+.+.+..+|+......++ -...|+.+++.-.++|+.+.+..+
T Consensus 1578 ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHH
Confidence 5555555555554442111 01223333334444555555555555555544221 344566666666666666666666
Q ss_pred HHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHH
Q 008249 494 YDEMLRRGITPDI--ITYTELIKGHCARGNMKEAE 526 (572)
Q Consensus 494 ~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~ 526 (572)
|++....++.|-. ..|...+.---..|+-+.++
T Consensus 1657 feRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1657 FERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred HHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 6666655554443 34444444444445544333
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.76 E-value=7.5e-06 Score=87.01 Aligned_cols=231 Identities=14% Similarity=0.043 Sum_probs=121.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHH
Q 008249 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQK-NIQ---TDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITY 334 (572)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 334 (572)
.+...|-..|......++.++|.+++++.... +.+ --.-.|.++++.-..-|.-+...++|+++.+. + -....|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-c-d~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-C-DAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-c-chHHHH
Confidence 44455555555555555555555555555432 111 11223444444444445555556666655543 1 123345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 008249 335 NTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVP-EPHIWNVIIDGYGR 413 (572)
Q Consensus 335 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~ 413 (572)
..|...|.+.+++++|.++++.|.+. +......|...++.+.+.++-+.|..++.+.++.-++. ........+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 55666666666666666666666554 23445566666666666666666666666655532110 12233444455556
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 008249 414 CGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD--VFTYNLLIGASCNLGHIHLAL 491 (572)
Q Consensus 414 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~ 491 (572)
.|+.+++..+|+.....-++ -...|+..++.-.++|+.+.+..+|++....++.|- -..|...+..--..|+-+.+.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 66666666666666554222 445666666666666666666666666666655544 234444444444445544433
Q ss_pred HH
Q 008249 492 QL 493 (572)
Q Consensus 492 ~~ 493 (572)
.+
T Consensus 1692 ~V 1693 (1710)
T KOG1070|consen 1692 YV 1693 (1710)
T ss_pred HH
Confidence 33
No 109
>PLN02789 farnesyltranstransferase
Probab=98.73 E-value=2.2e-05 Score=74.40 Aligned_cols=124 Identities=11% Similarity=0.080 Sum_probs=52.5
Q ss_pred HHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCh-
Q 008249 162 ELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN-ELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLL- 239 (572)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~- 239 (572)
.+...+..++|+.+..++.+..| -+..+|+..-.++...| ++++++..++++.+...+ +..+|+.....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchh
Confidence 33344445555555555554443 13334444433444444 344455555444443211 223333333333333331
Q ss_pred -hHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008249 240 -GDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN 291 (572)
Q Consensus 240 -~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 291 (572)
+++..+++++++.++ .+..+|+...-.+...|+++++++.++++++.+
T Consensus 124 ~~~el~~~~kal~~dp----kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 124 ANKELEFTRKILSLDA----KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred hHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 334444444444333 444444444444444444444444444444433
No 110
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=0.00014 Score=73.63 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=41.6
Q ss_pred HHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 008249 128 LCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKA 207 (572)
Q Consensus 128 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 207 (572)
-...|.+++|..+|++-.+. ..|-..|...|.+++|.++-+.-.+... ..||......+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHH
Confidence 34557778888887776552 3344455666777777666554433222 23444444455555556666
Q ss_pred HHHHHH
Q 008249 208 LHLFST 213 (572)
Q Consensus 208 ~~~~~~ 213 (572)
++.|++
T Consensus 878 leyyEK 883 (1416)
T KOG3617|consen 878 LEYYEK 883 (1416)
T ss_pred HHHHHh
Confidence 555553
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.73 E-value=2.3e-06 Score=78.55 Aligned_cols=187 Identities=12% Similarity=0.047 Sum_probs=126.3
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCh---hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCH--H
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDV---LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNC--A 189 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~ 189 (572)
+.....+..+...+.+.|+++.|...|+++.... +.++ .++..+...+.+.|++++|...++++.+..|.... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456678888889999999999999999988763 2222 46777888999999999999999999887664322 2
Q ss_pred HHHHHHHHHHhc--------CCHhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCcc
Q 008249 190 TYNAFITGYCRV--------NELDKALHLFSTMANNGIRPNR-VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSD 260 (572)
Q Consensus 190 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 260 (572)
++..+..++... |++++|.+.|+.+... .|+. ..+..+..... . ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~----------- 165 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRL----------- 165 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHH-----------
Confidence 444455555544 6788888888888765 3332 22222211100 0 0000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 261 VITSTILMDSYFKNGDKFQALALWNDMFQKN--IQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 261 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
......+...|.+.|++++|+..++...+.. .+.....+..+...+.+.|++++|...++.+...
T Consensus 166 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112245667888888888888888887652 1223567788888888888888888888877654
No 112
>PLN02789 farnesyltranstransferase
Probab=98.72 E-value=2.4e-05 Score=74.06 Aligned_cols=214 Identities=14% Similarity=0.073 Sum_probs=143.7
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcC-ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIG-DLEKADHVIREMSEMRPSPNCATYNAFITGY 198 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 198 (572)
++..+-..+...++.++|+.+.+.+++.. +-+..+|+.-..++.+.| ++++++..++++.+..++ +..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 55555666677789999999999998863 335567777777777777 578999999999988774 666788776666
Q ss_pred HhcCCH--hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc--
Q 008249 199 CRVNEL--DKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN-- 274 (572)
Q Consensus 199 ~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 274 (572)
.+.|+. ++++.+++++.+... -|..+|.....++...|+++++++.++++++.++ .+..+|+.....+.+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~----~N~sAW~~R~~vl~~~~~ 191 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV----RNNSAWNQRYFVITRSPL 191 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC----CchhHHHHHHHHHHhccc
Confidence 666763 678889988887653 3778888888888899999999999999999876 7788888777666554
Q ss_pred -CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 008249 275 -GDK----FQALALWNDMFQKNIQTDIVAYNVLINGFCLN----GDISSAFAYFCQMLKRGFLPDVITYNTLLNCLC 342 (572)
Q Consensus 275 -g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 342 (572)
|.. ++.++...+++... +-|...|+-+...+... +...+|.+.+.+....+ +.+...+..|++.|+
T Consensus 192 l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 192 LGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred cccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 222 34455554555443 44555666555555442 22334555544443321 223344444444444
No 113
>PF12854 PPR_1: PPR repeat
Probab=98.69 E-value=2.2e-08 Score=59.31 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=24.4
Q ss_pred CCCcCHHhHHHHHHHHHhCCChhhHHHHHHHH
Q 008249 113 TLETDYRRHVAVIRDLCLGGKIGTALWLRRKM 144 (572)
Q Consensus 113 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 144 (572)
|++||+.+||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777776
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.67 E-value=4e-06 Score=73.82 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=109.4
Q ss_pred HHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 008249 125 IRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNEL 204 (572)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 204 (572)
+..|...|+++......+.+... . ..+...++.+++...++...+..| .+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCH
Confidence 34566677776654443322211 0 011225666777777788777776 5788888888888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHH-HhCCC--hhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 008249 205 DKALHLFSTMANNGIRPNRVTHNILVHAL-CKKGL--LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQAL 281 (572)
Q Consensus 205 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 281 (572)
++|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++.++.++ .+..++..+...+.+.|++++|+
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP----~~~~al~~LA~~~~~~g~~~~Ai 164 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA----NEVTALMLLASDAFMQADYAQAI 164 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC----CChhHHHHHHHHHHHcCCHHHHH
Confidence 88888888888764 22666777777654 56666 4888888888888776 77788888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHH
Q 008249 282 ALWNDMFQKNIQTDIVAY 299 (572)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~ 299 (572)
..|+++.+.. +|+..-+
T Consensus 165 ~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 165 ELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHHhhC-CCCccHH
Confidence 8888888765 4454433
No 115
>PF12854 PPR_1: PPR repeat
Probab=98.67 E-value=3.2e-08 Score=58.60 Aligned_cols=32 Identities=50% Similarity=0.871 Sum_probs=15.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 466 GIFPDVFTYNLLIGASCNLGHIHLALQLYDEM 497 (572)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 497 (572)
|+.||..||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=2.9e-06 Score=84.39 Aligned_cols=214 Identities=16% Similarity=0.080 Sum_probs=147.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008249 335 NTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRC 414 (572)
Q Consensus 335 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 414 (572)
..+...+.+.|-...|..+++++. .|...+.+|+..|+..+|..+..+-.++ +|++..|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 345566777777888888776653 3556777788888888888887777773 56777787777777666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 415 GDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLY 494 (572)
Q Consensus 415 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 494 (572)
.-+++|.++.+..... .-..+.......++++++.+.|+.-.+... .-..+|-.+..+..+.++++.|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHH
Confidence 6677777776654321 111112222336778888888877666422 24566667777777788888888888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008249 495 DEMLRRGITPD-IITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 495 ~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
...... .|| ...||.+-.+|.+.|+-.+|...++++.+.+ .-+...|...+-...+.|.+++|++.+.++++.
T Consensus 543 ~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 543 HRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 887763 444 4778888888888888888888888888775 334455666666677888888888888877653
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.64 E-value=6.8e-06 Score=72.41 Aligned_cols=156 Identities=10% Similarity=0.024 Sum_probs=114.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008249 373 IQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSI 452 (572)
Q Consensus 373 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 452 (572)
+..|...|+++......+.+.. |. ..+...++.+++...++...+..+ .|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCH
Confidence 4467788888876444322211 10 122346777888888888777654 3788899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 453 FDAFSLKKEMLLDGIFPDVFTYNLLIGAS-CNLGH--IHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVF 529 (572)
Q Consensus 453 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 529 (572)
++|...|++..+.... +...+..+..++ ...|+ .++|.+++++..+.+ +-+...+..+...+...|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998886433 577777777764 56676 589999999998864 456788888889999999999999999
Q ss_pred HHHHHcCCCCChHHH
Q 008249 530 AKIQTLGLAIDHIPF 544 (572)
Q Consensus 530 ~~m~~~g~~p~~~~~ 544 (572)
+++.+.. +|+..-+
T Consensus 168 ~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 168 QKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHhhC-CCCccHH
Confidence 9998873 4554433
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.63 E-value=7.5e-06 Score=75.17 Aligned_cols=188 Identities=11% Similarity=0.005 Sum_probs=130.3
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCC-C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH--hHH
Q 008249 151 PDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPS-P-NCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNR--VTH 226 (572)
Q Consensus 151 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~ 226 (572)
.....+..+...+.+.|+++.|...|+++....|. | ...++..+..++...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35566777888888999999999999998876653 1 1246777888888999999999999999875321111 134
Q ss_pred HHHHHHHHhC--------CChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008249 227 NILVHALCKK--------GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVA 298 (572)
Q Consensus 227 ~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 298 (572)
..+..++... |+.++|.+.++.++...+ .+...+..+..... .... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~a~~~~~~----~~~~------~--------~~~ 168 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP----NSEYAPDAKKRMDY----LRNR------L--------AGK 168 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC----CChhHHHHHHHHHH----HHHH------H--------HHH
Confidence 4555555544 678889999999888765 33333322221111 0000 0 011
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008249 299 YNVLINGFCLNGDISSAFAYFCQMLKRGF--LPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (572)
Q Consensus 299 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 360 (572)
...+...+.+.|++++|...+....+... +.....+..+...+.+.|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 22456678999999999999999987621 223567889999999999999999999988765
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.63 E-value=1.1e-05 Score=70.86 Aligned_cols=158 Identities=19% Similarity=0.123 Sum_probs=85.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhC
Q 008249 157 NYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKK 236 (572)
Q Consensus 157 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 236 (572)
..+-..+.-.|+-+.+..+........+ .+....+..+....+.|++.+|...+.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 3344444455555555555544433222 244444445555566666666666666655432 44555666666666666
Q ss_pred CChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 008249 237 GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAF 316 (572)
Q Consensus 237 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 316 (572)
|+++.|..-|.+.++..+ .+....|.+.-.|.-.|+.+.|..++......+ .-|...-..+.......|++++|.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~----~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 148 GRFDEARRAYRQALELAP----NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred cChhHHHHHHHHHHHhcc----CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHH
Confidence 666666666666665443 445555566666666666666666665555543 234455555555555566666665
Q ss_pred HHHHH
Q 008249 317 AYFCQ 321 (572)
Q Consensus 317 ~~~~~ 321 (572)
.+...
T Consensus 223 ~i~~~ 227 (257)
T COG5010 223 DIAVQ 227 (257)
T ss_pred hhccc
Confidence 55443
No 120
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.61 E-value=0.00071 Score=65.63 Aligned_cols=410 Identities=12% Similarity=0.097 Sum_probs=239.9
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHH
Q 008249 150 VPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNIL 229 (572)
Q Consensus 150 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 229 (572)
+-|..+|..||.-+..+ ..+++.+.++++...-| -....|..-|..-.+..+++....+|.+-+..-+ +...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP-~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFP-SSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 56888899998887766 88899999998887655 3567788888888889999999999988876533 45555555
Q ss_pred HHHHHh-CCChhH----HHHHHHHHHhCCCCCCCccHHHHHHHHHHH---------HhcCCHHHHHHHHHHHHhCCCCC-
Q 008249 230 VHALCK-KGLLGD----AVKFLGEVLADDDGKATSDVITSTILMDSY---------FKNGDKFQALALWNDMFQKNIQT- 294 (572)
Q Consensus 230 l~~~~~-~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~g~~~~A~~~~~~~~~~~~~~- 294 (572)
++--.+ .|+... ..+.|+-.+..-. ....+-..|+..+..+ ..+.+++...++++++....+.-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig-~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIG-MDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhc-cCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 543222 333333 3344444443222 2224445566665533 33445666677777776532111
Q ss_pred -----CHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHH--CCCCCCHhH---------------HHHHHHHHHHcC
Q 008249 295 -----DIVAYNVLINGFC-------LNGDISSAFAYFCQMLK--RGFLPDVIT---------------YNTLLNCLCKQG 345 (572)
Q Consensus 295 -----~~~~~~~li~~~~-------~~g~~~~a~~~~~~m~~--~g~~p~~~~---------------~~~ll~~~~~~g 345 (572)
|-..|..=|+... +...+..|.++++++.. .|+.-...+ |..+|.- -+.+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksN 250 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcC
Confidence 1122222222111 12244556666665543 243322222 2222211 1111
Q ss_pred CHH---------HHHHHHHHH-HhCCCCCCHhhHHHHHHHHHHcCC--------------HHHHHHHHHHHHhCCCCCCH
Q 008249 346 KLD---------EASHFYGVL-SKTGVAPDQISYKTIIQGLCIHGD--------------IVKAREFLLSMLEKSVVPEP 401 (572)
Q Consensus 346 ~~~---------~A~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~ 401 (572)
-.. ...-.+++. .-.+..|+ .|.-....+...++ -+++..+++...+.-..-+.
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~pe--iWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~ 328 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPE--IWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK 328 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 110 011111111 11122222 22222222222222 34555555554443222233
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 008249 402 HIWNVIIDGYGRCG---DLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFP-DVFTYNLL 477 (572)
Q Consensus 402 ~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l 477 (572)
.+|..+.+---..- ..+.....++++......--..+|..++..-.+...+..|..+|.++.+.+..+ +...++++
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 33433332221111 255566666666553222233567778888888888999999999999988777 67788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHHhcC
Q 008249 478 IGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDH--IPFRILKKRYRRMK 555 (572)
Q Consensus 478 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g 555 (572)
+.-+| .++...|.++|+--..+ ...+..--...+.-+...|+-..|..+|++....++.||. .+|..+++-=..-|
T Consensus 409 mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 409 MEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred HHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc
Confidence 88777 48889999999986654 3344455577888888999999999999999998766654 57999999888999
Q ss_pred CHHHHHHHHHHHHh
Q 008249 556 ESDKARDIHQKWLL 569 (572)
Q Consensus 556 ~~~~A~~~~~~~l~ 569 (572)
+..-+.++-+++..
T Consensus 487 dL~si~~lekR~~~ 500 (656)
T KOG1914|consen 487 DLNSILKLEKRRFT 500 (656)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999988877653
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=4.5e-06 Score=83.11 Aligned_cols=221 Identities=15% Similarity=0.068 Sum_probs=137.3
Q ss_pred CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHH
Q 008249 149 TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNI 228 (572)
Q Consensus 149 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 228 (572)
.+|--..-..+...+.+.|-...|..+|+++ ..|.-+|.+|+..|+..+|..+..+-.+. +||+..|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 3444444455566667777777777777665 34555666777777777777766666552 566666666
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008249 229 LVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL 308 (572)
Q Consensus 229 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 308 (572)
+.+.....--+++|.++.+..-. .+-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+
T Consensus 463 LGDv~~d~s~yEkawElsn~~sa----------rA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISA----------RAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQ 531 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhH----------HHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHH
Confidence 66666555556666666654322 122222333344667777777777666554 4456666666666677
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 008249 309 NGDISSAFAYFCQMLKRGFLPD-VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKARE 387 (572)
Q Consensus 309 ~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 387 (572)
.+++..|.+.|...... .|| ...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|++
T Consensus 532 lek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred HhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHH
Confidence 77777777777666653 333 4567777777777777777777777776665 3344555566666667777777777
Q ss_pred HHHHHHh
Q 008249 388 FLLSMLE 394 (572)
Q Consensus 388 ~~~~~~~ 394 (572)
.+.++..
T Consensus 609 A~~rll~ 615 (777)
T KOG1128|consen 609 AYHRLLD 615 (777)
T ss_pred HHHHHHH
Confidence 7766654
No 122
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.58 E-value=0.0014 Score=67.49 Aligned_cols=453 Identities=16% Similarity=0.164 Sum_probs=250.2
Q ss_pred HHHHHHHH-HHHhHHHHHHHHhcCCCCCCCCcCHHhHHHHHHH--HHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHH
Q 008249 86 VFNALDLI-LKENLDRLKTMRDTGPVRCTLETDYRRHVAVIRD--LCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNE 162 (572)
Q Consensus 86 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 162 (572)
+|..+++- .+..+.....+.+.. ||.. |..++.+ +.+.|+.++|..+++.....+.. |..+...+-..
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~-------Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~ 86 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKH-------PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNV 86 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHC-------CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHH
Confidence 55555543 244555566666554 3332 4444444 46789999999888887766533 78889999999
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCC-----
Q 008249 163 LCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKG----- 237 (572)
Q Consensus 163 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----- 237 (572)
|.+.|+.++|..++++.....| +......+..+|.+.+.+.+-.+.--+|-+. ++-+...+-++++.....-
T Consensus 87 y~d~~~~d~~~~~Ye~~~~~~P--~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 87 YRDLGKLDEAVHLYERANQKYP--SEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENE 163 (932)
T ss_pred HHHHhhhhHHHHHHHHHHhhCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcc
Confidence 9999999999999999988664 5777788888999988877665555555442 3445555555665554321
Q ss_pred -----ChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 008249 238 -----LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALW-NDMFQKNIQTDIVAYNVLINGFCLNGD 311 (572)
Q Consensus 238 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~ 311 (572)
-..-|.+.++.+++.+... .+..-.......+...|++++|++++ ....+.-...+...-+.-+..+...++
T Consensus 164 ~~~~i~l~LA~~m~~~~l~~~gk~--~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~ 241 (932)
T KOG2053|consen 164 LLDPILLALAEKMVQKLLEKKGKI--ESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNR 241 (932)
T ss_pred cccchhHHHHHHHHHHHhccCCcc--chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcC
Confidence 1234667777777765211 33333334455566788899999999 444444334455555667788888999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----------------cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 008249 312 ISSAFAYFCQMLKRGFLPDVITYNTLLNCLCK----------------QGKLDEASHFYGVLSKTGVAPDQISYKTIIQG 375 (572)
Q Consensus 312 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 375 (572)
|.+..++-.++...|. |. |...++.+.+ .+..+...+......... ....|-+-+..
T Consensus 242 w~~l~~l~~~Ll~k~~--Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel 314 (932)
T KOG2053|consen 242 WQELFELSSRLLEKGN--DD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLEL 314 (932)
T ss_pred hHHHHHHHHHHHHhCC--cc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHH
Confidence 9999999999888753 32 3332222111 112222222222222211 11223333333
Q ss_pred HH---HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHH
Q 008249 376 LC---IHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVF-------TFNALILA 445 (572)
Q Consensus 376 ~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~ll~~ 445 (572)
+. .-|+.+++.-.|-+-. |..| .|..=+..|...=..+.-..++....... ++.. .+...+..
T Consensus 315 ~kr~~~~gd~ee~~~~y~~kf--g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~ 387 (932)
T KOG2053|consen 315 DKRYKLIGDSEEMLSYYFKKF--GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLL 387 (932)
T ss_pred HHHhcccCChHHHHHHHHHHh--CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHH
Confidence 33 3467776554443222 2111 22222333333333333333333332211 1110 01111111
Q ss_pred HHhcCC-----HHHHHHHHHHHH---hCC------CCCCHH---------HHHHHHHHHHhcCCHH---HHHHHHHHHHH
Q 008249 446 ETRGGS-----IFDAFSLKKEML---LDG------IFPDVF---------TYNLLIGASCNLGHIH---LALQLYDEMLR 499 (572)
Q Consensus 446 ~~~~g~-----~~~a~~~~~~m~---~~~------~~p~~~---------~~~~li~~~~~~g~~~---~A~~~~~~m~~ 499 (572)
-...|. -+.-..++++.. ++| +-|+.. +-+.|++.+-+.++.. +|+-+++.-..
T Consensus 388 ~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt 467 (932)
T KOG2053|consen 388 LRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLT 467 (932)
T ss_pred HHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 111221 122222222221 112 223322 2356677777777655 45555555544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 500 RGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 500 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
.. +-|..+--.+|+.|+-.|-+..|.++|+.+.-..+.-|...|. +...+...|++..+...++..+
T Consensus 468 ~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 468 KS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHL 534 (932)
T ss_pred cC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHH
Confidence 32 3344555677888888888888888888887666666655543 3345556677777776666544
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.55 E-value=3.8e-05 Score=81.10 Aligned_cols=242 Identities=10% Similarity=0.026 Sum_probs=160.7
Q ss_pred CCCc-CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCh-hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHH
Q 008249 113 TLET-DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDV-LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCAT 190 (572)
Q Consensus 113 ~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 190 (572)
+..| +...|..|+..+...+++++|.++.+...+. .|+. ..|-.+...+...++.+++..+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--------------- 87 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--------------- 87 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh---------------
Confidence 3444 6678999999999999999999999987775 4544 3444444567777776666443
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Q 008249 191 YNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDS 270 (572)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (572)
.++.......++.-...++..|... .-+...+..+..+|-+.|+.++|..+++++++..+ .++.+.|.+...
T Consensus 88 --~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~----~n~~aLNn~AY~ 159 (906)
T PRK14720 88 --NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADR----DNPEIVKKLATS 159 (906)
T ss_pred --hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc----ccHHHHHHHHHH
Confidence 2333333444444444444555543 23555788899999999999999999999999876 889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHH
Q 008249 271 YFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEA 350 (572)
Q Consensus 271 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 350 (572)
|... +.++|++++.+.... +...+++.++.++|.++..... .+...+..+++.....-
T Consensus 160 ~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~~ki~~~~----- 217 (906)
T PRK14720 160 YEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIERKVLGHR----- 217 (906)
T ss_pred HHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc-ccchHHHHHHHHHHhhh-----
Confidence 9999 999999988887753 5566788888888888877521 12222222222111110
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008249 351 SHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYG 412 (572)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 412 (572)
|...-+.++..+-..|-..+++++++.+++.+++.... |.....-++.+|.
T Consensus 218 ----------~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 ----------EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ----------ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 12223344555556666677777777777777776554 4555555555554
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.00027 Score=62.28 Aligned_cols=249 Identities=16% Similarity=0.101 Sum_probs=146.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH
Q 008249 270 SYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDE 349 (572)
Q Consensus 270 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 349 (572)
-+.-.|.+..++..-...... +.+...-.-+.++|...|.+..... +.... -.|.......+......-+..+.
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcchhHH
Confidence 344455565555444333322 1233333344556666665543322 22222 13333333333333333333333
Q ss_pred H-HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 350 A-SHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLML 428 (572)
Q Consensus 350 A-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 428 (572)
- .++.+.+.......+......-...|+..|++++|++.+.... +......=+..+.+..+.+-|...++.|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3344444444333343444444456777888888888776621 23333333455667778888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008249 429 SFGVSSNVFTFNALILAETR----GGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITP 504 (572)
Q Consensus 429 ~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 504 (572)
+. -+..|.+.|..++.+ .+++.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++...+. .-
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~ 239 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AK 239 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CC
Confidence 74 356677777777654 35678888888888764 67888888888888888899999999998888764 44
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 008249 505 DIITYTELIKGHCARGNM-KEAEEVFAKIQTL 535 (572)
Q Consensus 505 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 535 (572)
++.+...++-+-...|.. +-..+.+.++...
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 566666666655566654 3445566666654
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.53 E-value=1.3e-05 Score=70.35 Aligned_cols=164 Identities=17% Similarity=0.118 Sum_probs=136.4
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
|..+ ..+-..+...|+-+....+....... .+.+....+..+....+.|++..|...|++.....| +|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHH
Confidence 4444 66777788888888887777665443 234566777789999999999999999999988776 78999999999
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008249 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
+|.+.|++++|..-|.+..+.- .-++..++.+.-.+.-.|+.+.|..++......+. .+..+-..+.......|+
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~----ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA----ADSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC----CchHHHHHHHHHHhhcCC
Confidence 9999999999999999998863 23567788888889999999999999999998775 788899999999999999
Q ss_pred HHHHHHHHHHHH
Q 008249 277 KFQALALWNDMF 288 (572)
Q Consensus 277 ~~~A~~~~~~~~ 288 (572)
+++|.++-..-.
T Consensus 218 ~~~A~~i~~~e~ 229 (257)
T COG5010 218 FREAEDIAVQEL 229 (257)
T ss_pred hHHHHhhccccc
Confidence 999998776554
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.51 E-value=2.4e-05 Score=81.84 Aligned_cols=136 Identities=13% Similarity=0.018 Sum_probs=70.6
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
+.++..+-.|.....+.|.+++|..+++...+.. +.+......+...+.+.+++++|+..+++.....| .+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHH
Confidence 3445555555555555555555555555555541 22334444455555555555555555555555444 244455555
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 008249 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADD 253 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 253 (572)
..++.+.|++++|..+|++....+ +-+..++..+..++.+.|+.++|...|+..++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 555555555555555555555422 1234455555555555555555555555555533
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.51 E-value=7.6e-05 Score=78.11 Aligned_cols=146 Identities=10% Similarity=-0.053 Sum_probs=91.3
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008249 363 APDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442 (572)
Q Consensus 363 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 442 (572)
+.+...+..|.....+.|..++|..+++...+..+. +......++..+.+.+++++|....++.....+. +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 445666666666666777777777777777665443 4455566666667777777777777766665433 45555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008249 443 ILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTEL 512 (572)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 512 (572)
..++.+.|++++|..+|+++...+.. +..++..+..++...|+.++|...|++..+. ..|-...|+.+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 66666777777777777777663221 3566666666677777777777777776654 23444444443
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.51 E-value=7.2e-05 Score=79.07 Aligned_cols=169 Identities=9% Similarity=0.069 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHH
Q 008249 186 PNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNR-VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITS 264 (572)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 264 (572)
.+...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+...++.+++.-+ .+...
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~------------ 92 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS------------ 92 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh------------
Confidence 46678888888888888888888888876654 4443 3333344456666666555544 33332
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 008249 265 TILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQ 344 (572)
Q Consensus 265 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 344 (572)
.....++.-...+...|.+. .-+...+..+..+|-+.|+.+++..+|+++.+.. +-|+...|.+...|...
T Consensus 93 ------~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 93 ------FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred ------cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 22222232222222333332 2233456666666777777777777777776664 34566666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008249 345 GKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK 395 (572)
Q Consensus 345 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 395 (572)
+.++|.+++.+.... +...+++..+.+++.++...
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 777777666665543 34444555555555555554
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=0.00066 Score=59.92 Aligned_cols=222 Identities=15% Similarity=0.087 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 008249 84 QAVFNALDLILKENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNEL 163 (572)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 163 (572)
...|++=...+.++......-...+. +.+.++..-.-+-++|...|++.....- +.. |-.|.......+....
T Consensus 10 d~LF~iRn~fY~Gnyq~~ine~~~~~---~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~ 82 (299)
T KOG3081|consen 10 DELFNIRNYFYLGNYQQCINEAEKFS---SSKTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYL 82 (299)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHhhc---cccchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHh
Confidence 45666666656555443333333222 2223444444455666666665443322 111 2223333333333333
Q ss_pred HHcCChhHHH-HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHH
Q 008249 164 CKIGDLEKAD-HVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDA 242 (572)
Q Consensus 164 ~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 242 (572)
..-++.++-. ++.+.+.......+......-...|+..|++++|++...... +......=...+.+..+++-|
T Consensus 83 ~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A 156 (299)
T KOG3081|consen 83 ELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLA 156 (299)
T ss_pred hCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHH
Confidence 3333333222 233333333222232223333345556666666666555411 112222222334455556666
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 008249 243 VKFLGEVLADDDGKATSDVITSTILMDSYFK----NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAY 318 (572)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 318 (572)
.+.++.|.+. .+-.+.+-|..++.+ .+.+.+|.-+|++|-++- +|++.+.+-...++...|++++|..+
T Consensus 157 ~~~lk~mq~i------ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 157 EKELKKMQQI------DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred HHHHHHHHcc------chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHH
Confidence 6666666552 222333333333332 334555566666655432 45555555555555556666666666
Q ss_pred HHHHHHC
Q 008249 319 FCQMLKR 325 (572)
Q Consensus 319 ~~~m~~~ 325 (572)
++.....
T Consensus 230 L~eaL~k 236 (299)
T KOG3081|consen 230 LEEALDK 236 (299)
T ss_pred HHHHHhc
Confidence 6555554
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.46 E-value=1.8e-05 Score=65.85 Aligned_cols=93 Identities=12% Similarity=-0.006 Sum_probs=43.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCC
Q 008249 159 LVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGL 238 (572)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 238 (572)
+...+...|++++|...|+......| .+...|..+..++.+.|++++|...|+...... +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 34444444555555555544444443 244444444444444555555555555444432 2234444444444444455
Q ss_pred hhHHHHHHHHHHhCC
Q 008249 239 LGDAVKFLGEVLADD 253 (572)
Q Consensus 239 ~~~a~~~~~~~~~~~ 253 (572)
.++|...|+..+...
T Consensus 108 ~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 108 PGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHHHhC
Confidence 555555555444433
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=0.00042 Score=66.55 Aligned_cols=112 Identities=17% Similarity=0.203 Sum_probs=56.0
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHH
Q 008249 307 CLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPD-QISYKTIIQGLCIHGDIVKA 385 (572)
Q Consensus 307 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A 385 (572)
...|++++|+..+..+.+. .+-|..........+.+.++.++|.+.++.+... .|+ ....-.+..+|.+.|++.+|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 3455555555555555544 1222333333344555555555555555555553 233 34444455555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008249 386 REFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFS 422 (572)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 422 (572)
+.+++........ |+..|..|..+|...|+..++..
T Consensus 394 i~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 394 IRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHH
Confidence 5555555544333 55555555555555555554443
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.41 E-value=2.9e-05 Score=64.59 Aligned_cols=95 Identities=15% Similarity=-0.020 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Q 008249 191 YNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDS 270 (572)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (572)
+..+...+...|++++|...|+...... +.+...+..+..++.+.|++++|...|+.++...+ .+...+..+..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p----~~~~a~~~lg~~ 101 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA----SHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----CCcHHHHHHHHH
Confidence 3445566666777777777777766543 23556666666677777777777777777776554 666667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 008249 271 YFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 271 ~~~~g~~~~A~~~~~~~~~~ 290 (572)
+...|+.++|...|+.....
T Consensus 102 l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777776665
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=0.00018 Score=68.96 Aligned_cols=183 Identities=19% Similarity=0.197 Sum_probs=119.3
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
.|+...+...+.+......-..+..++.+..+. -......-..-.+...|++++|+..++.+...-| .|+..+...
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHH
Confidence 345555555555544443333333333332221 1222222233344456788888888888777655 466677777
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh
Q 008249 195 ITGYCRVNELDKALHLFSTMANNGIRPN-RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (572)
...+.+.|+.++|.+.++++... .|+ ......+..++.+.|++.+|..+++......+ .++..|..|..+|..
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p----~dp~~w~~LAqay~~ 420 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP----EDPNGWDLLAQAYAE 420 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC----CCchHHHHHHHHHHH
Confidence 77888888888888888888765 455 44555677788888888888888888887665 777888888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 274 NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 274 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
.|+..++.....+ +|...|+++.|...+....+.
T Consensus 421 ~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 421 LGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred hCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 8887777654433 345677888888877777665
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.34 E-value=1.7e-05 Score=65.58 Aligned_cols=118 Identities=13% Similarity=0.022 Sum_probs=85.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008249 423 IRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGI 502 (572)
Q Consensus 423 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 502 (572)
.++...+..+. +......+...+...|++++|...++.+...+. .+...+..+...+...|++++|...+++..+.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 44555554322 345566667778888888888888888877542 267777788888888888888888888887753
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHH
Q 008249 503 TPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFR 545 (572)
Q Consensus 503 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 545 (572)
+.+...+..+...+...|++++|...|++..+. .|+...+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 556677777888888888888888888888876 45544433
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.0008 Score=58.97 Aligned_cols=187 Identities=14% Similarity=0.150 Sum_probs=124.3
Q ss_pred CChhhHHHHHHHHHhC---C-CCCChh-hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 008249 132 GKIGTALWLRRKMIQK---G-TVPDVL-THNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDK 206 (572)
Q Consensus 132 g~~~~A~~~~~~m~~~---g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 206 (572)
.+.++.++++..++.. | ..++.. .|-.++-+....|+.+.|...++.+.+.-|... ..-..-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~-RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK-RVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHhhchhh
Confidence 4556666666665542 2 334443 234455566677888888888888777654322 111111222335688888
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 207 ALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWND 286 (572)
Q Consensus 207 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 286 (572)
|.++|+.+.+.+ +.|..++..-+...-..|+.-+|++-+.+.++... .|...|.-+...|...|++++|.-.+++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~----~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM----NDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 888888888775 44667777666677777888888888888888555 8888888888888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHC
Q 008249 287 MFQKNIQTDIVAYNVLINGFCLNG---DISSAFAYFCQMLKR 325 (572)
Q Consensus 287 ~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~ 325 (572)
+.-.. |.++..+..+...+.-.| +.+-+.++|.+..+.
T Consensus 180 ~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 180 LLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 87664 445555555655554444 445567777776664
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.001 Score=58.28 Aligned_cols=187 Identities=15% Similarity=0.178 Sum_probs=99.0
Q ss_pred CCHhHHHHHHHHHHH---CC-CCCCHhH-HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008249 202 NELDKALHLFSTMAN---NG-IRPNRVT-HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 202 g~~~~A~~~~~~m~~---~g-~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
.+.++.++++.++.. .| ..|+..+ |..++-+....|+.+.|...++.+....+ .+..+-..-.-.+-..|+
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp----~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP----GSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC----CChhHHHHHHHHHHHhhc
Confidence 455666666665543 22 3444433 33444555566666677776666666544 222222222223344566
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 008249 277 KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGV 356 (572)
Q Consensus 277 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 356 (572)
+++|+++++.+.+.+ +.|.+++--=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 666666666666655 445555554444444555555666655555554 444666666666666666666666666666
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcC---CHHHHHHHHHHHHhC
Q 008249 357 LSKTGVAPDQISYKTIIQGLCIHG---DIVKAREFLLSMLEK 395 (572)
Q Consensus 357 ~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~ 395 (572)
+.-.. |.++..+..+.+.+.-.| +..-|.++|.+.++.
T Consensus 180 ~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 180 LLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 65531 223334444444443333 344555666665554
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.27 E-value=5.3e-05 Score=62.62 Aligned_cols=95 Identities=17% Similarity=0.047 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Q 008249 191 YNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDS 270 (572)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (572)
...+...+...|++++|.+.|+.....+ +.+...+..+...+.+.|++++|...++..+..++ .+...+..+...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~la~~ 94 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP----DDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CChHHHHHHHHH
Confidence 3344444444445555555554444432 22334444444444444455555554444444332 344444444444
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 008249 271 YFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 271 ~~~~g~~~~A~~~~~~~~~~ 290 (572)
+...|++++|...|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 44445555555544444443
No 138
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.22 E-value=0.011 Score=61.30 Aligned_cols=415 Identities=14% Similarity=0.114 Sum_probs=234.1
Q ss_pred HHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHH--HHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHh
Q 008249 128 LCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNE--LCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELD 205 (572)
Q Consensus 128 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 205 (572)
....+++..|++..+.+.+. .|+.. |..++.+ +.+.|+.++|..+++.....++. |..|...+-.+|-..|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 34568899999999998876 35544 3334443 56889999999999888776664 8889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC----------
Q 008249 206 KALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG---------- 275 (572)
Q Consensus 206 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------- 275 (572)
+|..+|+..... .|+......+..+|.+.+.+.+-.+.--++-+.-+ .+...+=++++.+...-
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p----k~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP----KRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----cccchHHHHHHHHHHhccCCcccccch
Confidence 999999999865 57777778888889998887665555444444333 44444444455444321
Q ss_pred CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 008249 276 DKFQALALWNDMFQKN-IQTDIVAYNVLINGFCLNGDISSAFAYFC-QMLKRGFLPDVITYNTLLNCLCKQGKLDEASHF 353 (572)
Q Consensus 276 ~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 353 (572)
-..-|.+.++.+.+.+ -.-+..-...-...+...|++++|.+++. ...+.-..-+...-+.-++.+...+++.+..++
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 1234566666666654 11122222222344556889999999994 333332333445556677888899999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHH----------------HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---Hhc
Q 008249 354 YGVLSKTGVAPDQISYKTIIQGLC----------------IHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGY---GRC 414 (572)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~li~~~~----------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~---~~~ 414 (572)
-.++...|. |. |...++.+. ..+..+...+..++......+ ++ |-+-+.++ ..-
T Consensus 249 ~~~Ll~k~~--Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~R-gp--~LA~lel~kr~~~~ 321 (932)
T KOG2053|consen 249 SSRLLEKGN--DD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSR-GP--YLARLELDKRYKLI 321 (932)
T ss_pred HHHHHHhCC--cc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccccc-Cc--HHHHHHHHHHhccc
Confidence 988888763 32 333333222 122333333444443332111 12 22223332 345
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCC-
Q 008249 415 GDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVF-------TYNLLIGASCNLGH- 486 (572)
Q Consensus 415 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-------~~~~li~~~~~~g~- 486 (572)
|+.+++...|-+ +.|-.| .|..=+..|...=..+.-..++...... .++.. .+.+.+..-.-.|.
T Consensus 322 gd~ee~~~~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~ 394 (932)
T KOG2053|consen 322 GDSEEMLSYYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLY 394 (932)
T ss_pred CChHHHHHHHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhcc
Confidence 777776655432 222222 1111111111111222222233222211 11110 01111111111221
Q ss_pred ----HHHHHHHHHHHH---HCC------CCCCH---------HHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCh
Q 008249 487 ----IHLALQLYDEML---RRG------ITPDI---------ITYTELIKGHCARGNMK---EAEEVFAKIQTLGLAIDH 541 (572)
Q Consensus 487 ----~~~A~~~~~~m~---~~g------~~p~~---------~~~~~l~~~~~~~g~~~---~A~~~~~~m~~~g~~p~~ 541 (572)
-+.-..++.+.. ++| +-|+. .+.+.|+..+.+.++.. +|+-+++.-.... +-|.
T Consensus 395 ~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf 473 (932)
T KOG2053|consen 395 EKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNF 473 (932)
T ss_pred ccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccH
Confidence 122222222221 122 22332 24567888899988866 4555555555541 2244
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 542 IPFRILKKRYRRMKESDKARDIHQKW 567 (572)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 567 (572)
.+--.+++.|+-.|-+..|.++|+.+
T Consensus 474 ~~KLlLiriY~~lGa~p~a~~~y~tL 499 (932)
T KOG2053|consen 474 QTKLLLIRIYSYLGAFPDAYELYKTL 499 (932)
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHhc
Confidence 45557899999999999999999876
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.22 E-value=0.0001 Score=61.57 Aligned_cols=128 Identities=19% Similarity=0.179 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 008249 438 TFNALILAETRGGSIFDAFSLKKEMLLDGIFPD--VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI--ITYTELI 513 (572)
Q Consensus 438 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~ 513 (572)
.|..++..+ ..++...+...++.+.+....-. ....-.+...+...|++++|...|+........|+. .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 444445444 36777888777888777532211 223334556777888888888888888876422221 3445577
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 514 KGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
..+...|++++|...++..... ...+..+...++.|.+.|++++|+..|++.+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8888888999988888664332 2344566778888888999999998888754
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.14 E-value=0.00017 Score=69.86 Aligned_cols=121 Identities=19% Similarity=0.161 Sum_probs=72.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCC
Q 008249 159 LVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGL 238 (572)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 238 (572)
|+..+...++++.|..+|+++.+..| + ....++..+...++..+|.+++.+..... +-+...+..-...+.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~p--e--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDP--E--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCC--c--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 33344445666677777777666542 2 22345555656666666666666666542 2244455555566666666
Q ss_pred hhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 239 LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMF 288 (572)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 288 (572)
.+.|.++.+++....| .+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 250 ~~lAL~iAk~av~lsP----~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSP----SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCc----hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666666554 556666666666666666666666666554
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.14 E-value=0.00011 Score=71.03 Aligned_cols=126 Identities=13% Similarity=0.177 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q 008249 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILM 268 (572)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (572)
..-..++..+...++++.|.++|+++.+.. |+ ....+++.+...++-.+|.+++.+.++..+ .+........
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p----~d~~LL~~Qa 241 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP----QDSELLNLQA 241 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC----CCHHHHHHHH
Confidence 344456667777899999999999998763 44 445577888888889999999999998665 7788888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008249 269 DSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQML 323 (572)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 323 (572)
..+.+.++.+.|+++.+++.... +-+..+|..|..+|.+.|+++.|+..++.+-
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88999999999999999999874 4456699999999999999999998888764
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.05 E-value=0.00031 Score=58.71 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=9.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 008249 268 MDSYFKNGDKFQALALWNDMFQ 289 (572)
Q Consensus 268 ~~~~~~~g~~~~A~~~~~~~~~ 289 (572)
...+...|++++|...|+....
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh
Confidence 3344444444444444444443
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.05 E-value=7.1e-06 Score=49.31 Aligned_cols=33 Identities=33% Similarity=0.624 Sum_probs=27.1
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD 152 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 152 (572)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888887776
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.01 E-value=1.2e-05 Score=48.32 Aligned_cols=33 Identities=55% Similarity=0.967 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008249 473 TYNLLIGASCNLGHIHLALQLYDEMLRRGITPD 505 (572)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 505 (572)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.97 E-value=0.00015 Score=55.14 Aligned_cols=95 Identities=21% Similarity=0.205 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 008249 475 NLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRM 554 (572)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 554 (572)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..... +.+...+..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 344555566666677776666666542 3333555666666666677777777776666642 22334556666666667
Q ss_pred CCHHHHHHHHHHHHhcC
Q 008249 555 KESDKARDIHQKWLLRN 571 (572)
Q Consensus 555 g~~~~A~~~~~~~l~~~ 571 (572)
|++++|...+++.++.+
T Consensus 82 ~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 82 GKYEEALEAYEKALELD 98 (100)
T ss_pred HhHHHHHHHHHHHHccC
Confidence 77777777776665543
No 146
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.95 E-value=0.028 Score=56.58 Aligned_cols=206 Identities=12% Similarity=0.010 Sum_probs=118.7
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHhhC-CCCC--------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 008249 150 VPDVLTHNYLVNELCKIGDLEKADHVIREMSEM-RPSP--------NCATYNAFITGYCRVNELDKALHLFSTMANNGIR 220 (572)
Q Consensus 150 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 220 (572)
.|.+..|..+...-...-.++.|+..|-+..+. |++. +...-.+ ..-.--|++++|.++|-+|.+.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~a--ei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRA--EISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhH--hHhhhhcchhHhhhhhhccchhh--
Confidence 588888888887777777788887777665442 2110 0011111 12223588899998888876542
Q ss_pred CCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008249 221 PNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYN 300 (572)
Q Consensus 221 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 300 (572)
..+..+.+.|++-...++++.--...... .-..+|+.+...+.....+++|.+.+..-.. ..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~--~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e 826 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDE--GKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TE 826 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hH
Confidence 23455667777766666654322111101 2346777788888777778877777654331 12
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 008249 301 VLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHG 380 (572)
Q Consensus 301 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 380 (572)
..+.++.+..++++-..+... ++.+....-.+..++.+.|.-++|.+.+-+. + .| ...+..|...+
T Consensus 827 ~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~Ln 892 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELN 892 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHH
Confidence 345555555555554443333 3334555666777777777777776655332 1 12 13345566667
Q ss_pred CHHHHHHHHHH
Q 008249 381 DIVKAREFLLS 391 (572)
Q Consensus 381 ~~~~A~~~~~~ 391 (572)
+|.+|.++-+.
T Consensus 893 QW~~avelaq~ 903 (1189)
T KOG2041|consen 893 QWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHh
Confidence 77777766554
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.95 E-value=1.4e-05 Score=47.64 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=26.2
Q ss_pred HhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCC
Q 008249 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVP 151 (572)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 151 (572)
.+|+.+|.++++.|+++.|.++|+.|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888877766
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.91 E-value=2.3e-05 Score=46.65 Aligned_cols=32 Identities=47% Similarity=0.759 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008249 473 TYNLLIGASCNLGHIHLALQLYDEMLRRGITP 504 (572)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 504 (572)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.89 E-value=0.00058 Score=54.79 Aligned_cols=97 Identities=19% Similarity=0.103 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCC--CCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Q 008249 193 AFITGYCRVNELDKALHLFSTMANNGIR--PNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDS 270 (572)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (572)
.+...+.+.|++++|.+.|+.+...... .....+..+..++.+.|++++|...++.+....+ ..+.....+..+..+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP-KSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC-CCCcccHHHHHHHHH
Confidence 3333444444444444444444332110 0012233344444444444444444444444332 100112333444444
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 008249 271 YFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 271 ~~~~g~~~~A~~~~~~~~~~ 290 (572)
+.+.|+.++|.+.++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 44444444444444444443
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.87 E-value=0.00043 Score=55.57 Aligned_cols=99 Identities=12% Similarity=0.005 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHH
Q 008249 437 FTFNALILAETRGGSIFDAFSLKKEMLLDGIF-P-DVFTYNLLIGASCNLGHIHLALQLYDEMLRRG--ITPDIITYTEL 512 (572)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l 512 (572)
.++..+...+.+.|++++|.+.+..+...... | ....+..+...+.+.|+++.|...|+.+.... .+.....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34556667777788888888888888764321 1 13455667777888888888888888877642 11124566777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 008249 513 IKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 513 ~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
..++...|+.++|.+.++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 77788888888888888888776
No 151
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.86 E-value=0.0046 Score=56.43 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=51.5
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhH---HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTH---NYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNA 193 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 193 (572)
+...+-.....+.+.|++++|...|+.+...- +-+.... -.++.++.+.++++.|...+++..+..|......|..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 34344445555677788888888888887752 2222222 3456777888888888888888887766544444444
Q ss_pred HHHHHH
Q 008249 194 FITGYC 199 (572)
Q Consensus 194 li~~~~ 199 (572)
.+.+.+
T Consensus 110 Y~~g~~ 115 (243)
T PRK10866 110 YMRGLT 115 (243)
T ss_pred HHHHHh
Confidence 444443
No 152
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.84 E-value=0.00037 Score=67.85 Aligned_cols=124 Identities=15% Similarity=0.204 Sum_probs=100.8
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008249 361 GVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKS--VVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFT 438 (572)
Q Consensus 361 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 438 (572)
+.+.+......+++.+....+++.+..++.+..... ...-+.|..++++.|...|..+.+..+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 345677777788888888888888999888887652 223345567899999999999999999998889999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008249 439 FNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNL 484 (572)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 484 (572)
+|.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999888877777777777777776665
No 153
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.82 E-value=0.0004 Score=67.60 Aligned_cols=125 Identities=18% Similarity=0.155 Sum_probs=96.1
Q ss_pred CCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008249 219 IRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVA 298 (572)
Q Consensus 219 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 298 (572)
.+.+...+..+++.+....+++.+..++-+...... ....-..+..++++.|.+.|..+.++++++.=...|+-||..+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~-~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPN-CSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcc-cccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 344666777777777777788888888888776532 1112234556888888999999999998888888898999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 008249 299 YNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQ 344 (572)
Q Consensus 299 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 344 (572)
+|.||+.+.+.|++..|.++...|..++...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999888888777666777777767666665
No 154
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.79 E-value=0.00091 Score=54.95 Aligned_cols=95 Identities=9% Similarity=-0.072 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008249 439 FNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCA 518 (572)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 518 (572)
.-.+...+...|++++|.++|+-+...... +..-|-.|.-++-..|++++|+..|....... +.|+..+..+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 334444456667777777777776654322 34555566666666777777777777776654 4455666677777777
Q ss_pred cCCHHHHHHHHHHHHHc
Q 008249 519 RGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 519 ~g~~~~A~~~~~~m~~~ 535 (572)
.|+.+.|.+.|+.....
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77777777777766654
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.76 E-value=0.00057 Score=51.86 Aligned_cols=89 Identities=20% Similarity=0.196 Sum_probs=35.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh
Q 008249 194 FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK 273 (572)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (572)
+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++......+ .+...+..+...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 80 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP----DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----cchhHHHHHHHHHHH
Confidence 3334444444444444444443321 11223333334444444444444444444443332 222333344444444
Q ss_pred cCCHHHHHHHHHHH
Q 008249 274 NGDKFQALALWNDM 287 (572)
Q Consensus 274 ~g~~~~A~~~~~~~ 287 (572)
.|+.++|...+...
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 44444444444333
No 156
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.0063 Score=57.34 Aligned_cols=156 Identities=12% Similarity=0.004 Sum_probs=93.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 008249 409 DGYGRCGDLSNAFSIRDLMLSF---GVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD-VFTYNLLIGASCNL 484 (572)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~ 484 (572)
+-..+.|++..|.+.|.+.+.. +..|+...|........+.|+.++|+.--++..+. .|. ...|..-..++...
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHH
Confidence 3456789999999999988763 33455666777777788889999999888887763 222 22333334455667
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH--H-hcCCHHHH
Q 008249 485 GHIHLALQLYDEMLRRGITP-DIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRY--R-RMKESDKA 560 (572)
Q Consensus 485 g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~--~-~~g~~~~A 560 (572)
+++++|.+-|+...+....+ ...++.-...++-+..+.+. ..++.-.......|....|..+.-.+ . ..|.-.+|
T Consensus 335 e~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~-ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~ea 413 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDW-YKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEA 413 (486)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhH-HHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHH
Confidence 88999999998887653222 22444444444443333221 22222222222344555665433222 2 35666788
Q ss_pred HHHHHHH
Q 008249 561 RDIHQKW 567 (572)
Q Consensus 561 ~~~~~~~ 567 (572)
...|++.
T Consensus 414 E~kFkev 420 (486)
T KOG0550|consen 414 EAKFKEV 420 (486)
T ss_pred HHHHHHH
Confidence 8777765
No 157
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.75 E-value=0.002 Score=53.04 Aligned_cols=94 Identities=10% Similarity=0.002 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 008249 156 HNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCK 235 (572)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 235 (572)
.-.+...+...|++++|..+|+.+....| .+..-|..|..++-..|++++|+..|.......+ -|+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 33444445555666666666666555544 3445555555555556666666666666555442 245555555556666
Q ss_pred CCChhHHHHHHHHHHh
Q 008249 236 KGLLGDAVKFLGEVLA 251 (572)
Q Consensus 236 ~g~~~~a~~~~~~~~~ 251 (572)
.|+.+.|++-|+.++.
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666655544
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.73 E-value=8.8e-05 Score=55.26 Aligned_cols=81 Identities=19% Similarity=0.230 Sum_probs=52.9
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHH
Q 008249 484 LGHIHLALQLYDEMLRRGI-TPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI-DHIPFRILKKRYRRMKESDKAR 561 (572)
Q Consensus 484 ~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 561 (572)
.|+++.|+.+++++.+..- .++...+..+..+|.+.|++++|.+++++ .+. .| +......++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4678888888888877531 12345555678888888888888888877 322 22 2234445577788888888888
Q ss_pred HHHHHH
Q 008249 562 DIHQKW 567 (572)
Q Consensus 562 ~~~~~~ 567 (572)
+.+++.
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 887763
No 159
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=4.7e-05 Score=44.16 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCC
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKG 148 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 148 (572)
+|+++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 67777888888888888888887777765
No 160
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.70 E-value=0.00064 Score=51.69 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=41.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008249 407 IIDGYGRCGDLSNAFSIRDLMLSFGV-SSNVFTFNALILAETRGG--------SIFDAFSLKKEMLLDGIFPDVFTYNLL 477 (572)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~~l 477 (572)
.|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. +.-+.+.+|++|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 33444444666666666666666666 566666666665554432 123344455555555555555555555
Q ss_pred HHHHH
Q 008249 478 IGASC 482 (572)
Q Consensus 478 i~~~~ 482 (572)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55443
No 161
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.66 E-value=0.019 Score=48.12 Aligned_cols=124 Identities=14% Similarity=0.062 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHH
Q 008249 399 PEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDG---IFPDVFTYN 475 (572)
Q Consensus 399 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~ 475 (572)
|+...--.|..+....|++.+|...|++...--+.-|....-.+.++....+++..|...++++.+.. -.|| +.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 44444445555555555555555555555443333444455555555555555555555555554432 1122 222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008249 476 LLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAE 526 (572)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 526 (572)
.+.+.+...|++.+|..-|+..... -|+...-......+.++|+.+++.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 3444555555555555555555542 344433333333444555444443
No 162
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.65 E-value=5.7e-05 Score=43.79 Aligned_cols=28 Identities=46% Similarity=0.845 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008249 473 TYNLLIGASCNLGHIHLALQLYDEMLRR 500 (572)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (572)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 163
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.63 E-value=0.015 Score=53.00 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=32.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 372 IIQGLCIHGDIVKAREFLLSMLEKS--VVPEPHIWNVIIDGYGRCGDLSNAFSIRDLM 427 (572)
Q Consensus 372 li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 427 (572)
+...|.+.|.+..|..-++.+.+.- .+........++.+|...|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4445666666666666666666542 2223344555666666666666666655444
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.63 E-value=0.0038 Score=53.89 Aligned_cols=89 Identities=15% Similarity=0.082 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHH
Q 008249 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRPN--RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTI 266 (572)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 266 (572)
..+..+...+...|++++|...|++....+..+. ...+..+...+.+.|++++|...+++.+...+ .+...+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~ 111 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP----KQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----ccHHHHHH
Confidence 3455555566666666666666666654332221 24566666666777777777777777766544 45556666
Q ss_pred HHHHHHhcCCHHHHH
Q 008249 267 LMDSYFKNGDKFQAL 281 (572)
Q Consensus 267 l~~~~~~~g~~~~A~ 281 (572)
+...+...|+...+.
T Consensus 112 lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 112 IAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHcCChHhHh
Confidence 666666666644433
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.62 E-value=0.0016 Score=55.98 Aligned_cols=80 Identities=13% Similarity=-0.027 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHH
Q 008249 189 ATYNAFITGYCRVNELDKALHLFSTMANNGIRP--NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTI 266 (572)
Q Consensus 189 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 266 (572)
..|..+...+...|++++|...|++.......| ...++..+...+...|+.++|...++..+...+ .....+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~----~~~~~~~~ 111 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP----FLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CcHHHHHH
Confidence 344555555555566666666666655432121 123455555666666666666666666665443 33444444
Q ss_pred HHHHHH
Q 008249 267 LMDSYF 272 (572)
Q Consensus 267 l~~~~~ 272 (572)
+...+.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 444444
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.62 E-value=0.0022 Score=62.47 Aligned_cols=88 Identities=11% Similarity=-0.039 Sum_probs=43.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008249 410 GYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHL 489 (572)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (572)
.+...|++++|...|+++.+.... +...|..+..+|.+.|++++|+..+++++..... +...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHH
Confidence 344445555555555555544322 3444444455555555555555555555543211 34444444555555555555
Q ss_pred HHHHHHHHHH
Q 008249 490 ALQLYDEMLR 499 (572)
Q Consensus 490 A~~~~~~m~~ 499 (572)
|...|++..+
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.61 E-value=0.0047 Score=62.91 Aligned_cols=146 Identities=11% Similarity=0.037 Sum_probs=96.4
Q ss_pred CCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHH
Q 008249 395 KSVVPEPHIWNVIIDGYGRC-----GDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGG--------SIFDAFSLKKE 461 (572)
Q Consensus 395 ~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~ 461 (572)
...+.+...|...+.+.... ++.+.|..+|++..+..+. ....|..+..++.... ++..+.+..+.
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34556778888888775432 2367888888888885432 3455555544443221 12333444444
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008249 462 MLLDG-IFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID 540 (572)
Q Consensus 462 m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 540 (572)
..... ...+...|..+.-.....|++++|...++++.+. .|+...|..+...+...|+.++|.+.++++... .|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 33321 2234566777766666778899999999988885 468888888888888999999999999888876 565
Q ss_pred hHHHH
Q 008249 541 HIPFR 545 (572)
Q Consensus 541 ~~~~~ 545 (572)
..+|.
T Consensus 486 ~pt~~ 490 (517)
T PRK10153 486 ENTLY 490 (517)
T ss_pred CchHH
Confidence 55553
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.59 E-value=0.002 Score=60.33 Aligned_cols=145 Identities=12% Similarity=0.111 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008249 402 HIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILA-ETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGA 480 (572)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 480 (572)
.+|..++...-+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|.++|+...+. ...+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4688888888888999999999999986432 233444444444 33356777799999998876 44577888889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 008249 481 SCNLGHIHLALQLYDEMLRRGITPDI---ITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRY 551 (572)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 551 (572)
+...|+.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+..+.+++.+. .|+...+..+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 99999999999999999875 33333 58999999999999999999999999886 45544444454444
No 169
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.59 E-value=0.0016 Score=49.55 Aligned_cols=72 Identities=21% Similarity=0.369 Sum_probs=32.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008249 270 SYFKNGDKFQALALWNDMFQKNI-QTDIVAYNVLINGFCLNG--------DISSAFAYFCQMLKRGFLPDVITYNTLLNC 340 (572)
Q Consensus 270 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (572)
.+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|..|...+++|+..+|+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33334555555555555555554 445555555544444332 112334444444444444444444444443
Q ss_pred H
Q 008249 341 L 341 (572)
Q Consensus 341 ~ 341 (572)
+
T Consensus 114 L 114 (120)
T PF08579_consen 114 L 114 (120)
T ss_pred H
Confidence 3
No 170
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.59 E-value=0.076 Score=50.91 Aligned_cols=138 Identities=9% Similarity=-0.021 Sum_probs=89.4
Q ss_pred CCCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 008249 113 TLETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYN 192 (572)
Q Consensus 113 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 192 (572)
.-|.|..+|-.||.-|..+|..++..+++++|..- .+--+.+|..-+.+=...+++...+.+|.+.+.... +...|.
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~ 113 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWM 113 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHH
Confidence 34678889999999999999999999999999764 344556777777777777899999999998877543 567777
Q ss_pred HHHHHHHhcCCH------hHHHHHHHHHHH-CCCCCCH-hHHHHHHHHHH---hC------CChhHHHHHHHHHHhCC
Q 008249 193 AFITGYCRVNEL------DKALHLFSTMAN-NGIRPNR-VTHNILVHALC---KK------GLLGDAVKFLGEVLADD 253 (572)
Q Consensus 193 ~li~~~~~~g~~------~~A~~~~~~m~~-~g~~p~~-~~~~~ll~~~~---~~------g~~~~a~~~~~~~~~~~ 253 (572)
..+..--+.+.. ....+.|+-... .++.|-. ..|+..+..+- .. .+++...+.+.+++...
T Consensus 114 lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP 191 (660)
T COG5107 114 LYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTP 191 (660)
T ss_pred HHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCc
Confidence 777655554321 122333443332 3445432 33444433322 22 34555667777777644
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.59 E-value=0.0023 Score=62.28 Aligned_cols=89 Identities=15% Similarity=-0.034 Sum_probs=43.1
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008249 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
.+...|++++|++.|++.++.. +-+...|..+..++.+.|++++|...+++++...+ .+...|..+..+|...|+
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P----~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP----SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----CCHHHHHHHHHHHHHhCC
Confidence 3334455555555555554432 11344444444555555555555555555555443 344445555555555555
Q ss_pred HHHHHHHHHHHHhC
Q 008249 277 KFQALALWNDMFQK 290 (572)
Q Consensus 277 ~~~A~~~~~~~~~~ 290 (572)
+++|+..|++..+.
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555554443
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.57 E-value=0.0002 Score=53.36 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=5.4
Q ss_pred HHHhcCCHhHHHHHH
Q 008249 197 GYCRVNELDKALHLF 211 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~ 211 (572)
++.+.|++++|..++
T Consensus 34 ~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 34 CYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHTTHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHH
Confidence 333333333333333
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.57 E-value=0.0057 Score=52.81 Aligned_cols=61 Identities=11% Similarity=0.054 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 404 WNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSN--VFTFNALILAETRGGSIFDAFSLKKEMLL 464 (572)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 464 (572)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++...
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444455555555555555443322111 23344444444455555555555544444
No 174
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.56 E-value=0.00041 Score=49.30 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 008249 505 DIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMK-ESDKARDIHQKWLLRNK 572 (572)
Q Consensus 505 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~~ 572 (572)
+..+|..+...+...|++++|+..|++..+.. +.+...|..+..++...| ++++|++.+++.++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45667777888888888888888888888763 224556777777888888 68888888888877664
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.56 E-value=0.0021 Score=55.23 Aligned_cols=96 Identities=17% Similarity=0.016 Sum_probs=58.9
Q ss_pred HhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008249 223 RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVL 302 (572)
Q Consensus 223 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 302 (572)
...+..+...+...|++++|...|++.+...+ .......++..+...+...|++++|++.+++..... +....++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 34556666667777888888888887776543 111234567777777778888888888877777653 3334445555
Q ss_pred HHHHH-------hCCCHHHHHHHHH
Q 008249 303 INGFC-------LNGDISSAFAYFC 320 (572)
Q Consensus 303 i~~~~-------~~g~~~~a~~~~~ 320 (572)
...+. ..|+++.|...++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHH
Confidence 55554 4555554444443
No 176
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.08 Score=50.26 Aligned_cols=278 Identities=12% Similarity=-0.019 Sum_probs=131.0
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008249 122 VAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRV 201 (572)
Q Consensus 122 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 201 (572)
.-..+.+.+..++..|+..+...++.+ +.+...|..-...+...|++++|.--.+.-.+..+. ....+.-.-.++...
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLAL 130 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhh
Confidence 334455667778888888888888764 334555555566666667777766555444443221 111222223333333
Q ss_pred CCHhHHHHHHHH---------------HHHCCC-CCCHhHHHHHH-HHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHH
Q 008249 202 NELDKALHLFST---------------MANNGI-RPNRVTHNILV-HALCKKGLLGDAVKFLGEVLADDDGKATSDVITS 264 (572)
Q Consensus 202 g~~~~A~~~~~~---------------m~~~g~-~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 264 (572)
++..+|.+.++. ...... +|...++..+- .++.-.|+.++|.++--.+++.+. .+....
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~----~n~~al 206 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA----TNAEAL 206 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc----chhHHH
Confidence 344444433331 111100 12222222221 233344555555555555444332 222222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 008249 265 TILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQ 344 (572)
Q Consensus 265 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 344 (572)
-.-..++.-.++.+.|...|++.+..+ |+... .+..-.-.+.++.+..+ .+-..+.
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~----------sk~~~~~~k~le~~k~~------------gN~~fk~ 262 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLD--PDHQK----------SKSASMMPKKLEVKKER------------GNDAFKN 262 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccC--hhhhh----------HHhHhhhHHHHHHHHhh------------hhhHhhc
Confidence 222223333444555555555444332 22111 01111111111222222 1234567
Q ss_pred CCHHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008249 345 GKLDEASHFYGVLSKTG---VAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAF 421 (572)
Q Consensus 345 g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 421 (572)
|.+..|.+.|.+.+... ..++...|........+.|+..+|+.--+...+.+.. -...|..-..++...+++++|.
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766532 3344455555555666777777777777666654211 1112233334455566777777
Q ss_pred HHHHHHHhC
Q 008249 422 SIRDLMLSF 430 (572)
Q Consensus 422 ~~~~~~~~~ 430 (572)
+-++...+.
T Consensus 342 ~d~~~a~q~ 350 (486)
T KOG0550|consen 342 EDYEKAMQL 350 (486)
T ss_pred HHHHHHHhh
Confidence 777666553
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.55 E-value=0.0054 Score=48.63 Aligned_cols=94 Identities=16% Similarity=0.177 Sum_probs=54.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCC--HhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH
Q 008249 194 FITGYCRVNELDKALHLFSTMANNGIRPN--RVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY 271 (572)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (572)
+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..++++.....+ ..+.+......+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p-~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP-DDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CccccHHHHHHHHHHH
Confidence 34455566777777777777766665443 23455566666677777777777777666543 1111333333344455
Q ss_pred HhcCCHHHHHHHHHHHH
Q 008249 272 FKNGDKFQALALWNDMF 288 (572)
Q Consensus 272 ~~~g~~~~A~~~~~~~~ 288 (572)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66666666666665544
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.54 E-value=0.0019 Score=60.49 Aligned_cols=83 Identities=10% Similarity=-0.007 Sum_probs=32.9
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCc-cHHHHHHHHHHHHhcCCHHHHHH
Q 008249 204 LDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATS-DVITSTILMDSYFKNGDKFQALA 282 (572)
Q Consensus 204 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 282 (572)
.+.|.++|+...+. +..+...|...++.+.+.|+.+.|..+|+..+..-... . ....|...+..-.+.|+.+.+.+
T Consensus 52 ~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~--~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 52 PKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKE--KQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCH--HHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCch--hHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33344444444432 22333344444444444444444444444444332100 1 12344444444444444444444
Q ss_pred HHHHHHh
Q 008249 283 LWNDMFQ 289 (572)
Q Consensus 283 ~~~~~~~ 289 (572)
+.+++.+
T Consensus 129 v~~R~~~ 135 (280)
T PF05843_consen 129 VEKRAEE 135 (280)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 179
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.54 E-value=0.011 Score=52.50 Aligned_cols=78 Identities=19% Similarity=0.193 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKG--TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (572)
.+-.....+.+.|++.+|...|+.+...- -+--..+...++.++.+.|+++.|...++++.+..|......+...+.+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 34445566778888999998888888752 1122345566778888888888888888888776654333333333333
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.52 E-value=0.021 Score=53.76 Aligned_cols=90 Identities=20% Similarity=0.251 Sum_probs=39.5
Q ss_pred HHHhC-CCHHHHHHHHHHHHHC----CCCCC--HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----CHh-hHHH
Q 008249 305 GFCLN-GDISSAFAYFCQMLKR----GFLPD--VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAP-----DQI-SYKT 371 (572)
Q Consensus 305 ~~~~~-g~~~~a~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~-~~~~ 371 (572)
.|... |++++|++.|.+..+. | .+. ...+..+...+.+.|++++|.++|+++....... +.. .+-.
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 34444 5666666666655432 1 111 2234445555666666666666666655432111 111 1112
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Q 008249 372 IIQGLCIHGDIVKAREFLLSMLEK 395 (572)
Q Consensus 372 li~~~~~~g~~~~A~~~~~~~~~~ 395 (572)
.+-++...||...|.+.+++....
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 222333455555565555555543
No 181
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.49 E-value=0.15 Score=51.71 Aligned_cols=203 Identities=10% Similarity=0.020 Sum_probs=127.9
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHH----------HHHcCChhHHHHHHHHHhhCCC
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNE----------LCKIGDLEKADHVIREMSEMRP 184 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~----------~~~~g~~~~A~~~~~~~~~~~~ 184 (572)
.|-+..|..|...-.+.-.++-|...|-+.... +.......|-.. -.--|++++|++++-++.+.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 466778988888777777888888887665443 222211111111 122488999999888775533
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHH
Q 008249 185 SPNCATYNAFITGYCRVNELDKALHLFSTMANNGI--RPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVI 262 (572)
Q Consensus 185 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 262 (572)
..|..+.+.|++-...++++.--. +. ..-...++.+...+.....+++|.+.+.....
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~----------- 824 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD----------- 824 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------
Confidence 345667788888887777654211 11 11135688888888888888888888865422
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 008249 263 TSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLC 342 (572)
Q Consensus 263 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 342 (572)
....+.++.+..++++...+-..+ +.+....-.+...+...|.-++|.+.|-+. +. | ...+..|.
T Consensus 825 -~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv 889 (1189)
T KOG2041|consen 825 -TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCV 889 (1189)
T ss_pred -hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHH
Confidence 123566677766666665555544 345556667778888888888888766432 21 2 13455667
Q ss_pred HcCCHHHHHHHHHH
Q 008249 343 KQGKLDEASHFYGV 356 (572)
Q Consensus 343 ~~g~~~~A~~~~~~ 356 (572)
..+++.+|.++-+.
T Consensus 890 ~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777766544
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.49 E-value=0.04 Score=46.24 Aligned_cols=103 Identities=8% Similarity=0.037 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHH
Q 008249 186 PNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITST 265 (572)
Q Consensus 186 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 265 (572)
|++.--..|..++...|+..+|...|++...--+.-|......+.++....+++..|...++.+.+..+.. .++.+.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~--r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF--RSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc--CCCCchH
Confidence 44444555556666666666666666665542234455555555555556666666666666655544333 2223333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 266 ILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 266 ~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
.+.+.+...|...+|...|+.....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh
Confidence 4445555555555555555555544
No 183
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.0018 Score=58.44 Aligned_cols=97 Identities=21% Similarity=0.171 Sum_probs=72.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 008249 410 GYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD-VFTYNLLIGASCNLGHIH 488 (572)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~ 488 (572)
-..+.+++.+|+..|.+.++..+. |.+-|..-..+|++.|.++.|++-.+..+.. .|. ..+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 355677888888888888876443 6777777778888888888888877777763 444 567888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH
Q 008249 489 LALQLYDEMLRRGITPDIITYTE 511 (572)
Q Consensus 489 ~A~~~~~~m~~~g~~p~~~~~~~ 511 (572)
+|++.|++.++ +.|+..+|-.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHH
Confidence 88888888776 5677666644
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.46 E-value=0.01 Score=60.42 Aligned_cols=144 Identities=14% Similarity=0.041 Sum_probs=96.7
Q ss_pred CCCCCHhhHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHH
Q 008249 361 GVAPDQISYKTIIQGLCIHG-----DIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCG--------DLSNAFSIRDLM 427 (572)
Q Consensus 361 ~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~~ 427 (572)
+.+.+...|..++.+..... +...|..+|++..+..+. ....|..+..++.... +...+.+..+..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34567788888888765422 367888889988887654 4555555544443321 123333344433
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008249 428 LSF-GVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI 506 (572)
Q Consensus 428 ~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 506 (572)
... ....+...|..+.......|++++|...++++...+ |+...|..+...+...|+.++|.+.+++..+. .|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC
Confidence 332 123345677777666667789999999999988854 67888888888899999999999999888774 5665
Q ss_pred HHH
Q 008249 507 ITY 509 (572)
Q Consensus 507 ~~~ 509 (572)
.+|
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 554
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.40 E-value=0.00078 Score=47.17 Aligned_cols=55 Identities=15% Similarity=0.185 Sum_probs=25.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 479 GASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
..+...|++++|...|+++++.. +-+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555554432 22334444455555555555555555555444
No 186
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.37 E-value=0.0028 Score=54.66 Aligned_cols=86 Identities=20% Similarity=0.264 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHH
Q 008249 400 EPHIWNVIIDGYGR-----CGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRG----------------GSIFDAFSL 458 (572)
Q Consensus 400 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----------------g~~~~a~~~ 458 (572)
+..+|..+++.|.+ .|..+-....++.|.+.|+.-|..+|+.|++.+-+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44444444444432 345555555556666666666666666666554431 123445556
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008249 459 KKEMLLDGIFPDVFTYNLLIGASCNLG 485 (572)
Q Consensus 459 ~~~m~~~~~~p~~~~~~~li~~~~~~g 485 (572)
+++|...|+-||..++..|++.+.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 666666666666666666655554433
No 187
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.013 Score=53.41 Aligned_cols=109 Identities=18% Similarity=0.223 Sum_probs=81.5
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhC---CChhHHHHHHHHHHhCC
Q 008249 177 REMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKK---GLLGDAVKFLGEVLADD 253 (572)
Q Consensus 177 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 253 (572)
+.-...+| -|...|-.|..+|...|+++.|...|.+..+.. .+++..+..+..++... ....++..+|++++..+
T Consensus 146 e~~L~~nP-~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D 223 (287)
T COG4235 146 ETHLQQNP-GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD 223 (287)
T ss_pred HHHHHhCC-CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC
Confidence 44445555 477888888888888888888888888887753 34566666666555433 23567888888888877
Q ss_pred CCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008249 254 DGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN 291 (572)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 291 (572)
+ .++.+...|...+...|++.+|...|+.|.+..
T Consensus 224 ~----~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 224 P----ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred C----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 6 788888888888888888888888888888764
No 188
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.012 Score=51.96 Aligned_cols=134 Identities=10% Similarity=0.071 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC---CCccHHHHHH
Q 008249 190 TYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGK---ATSDVITSTI 266 (572)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~ 266 (572)
.-+.++..+.-.|.+.-...++.+..+...+.++.....|.+.-.+.|+.+.|...|+...+... . ...+..+...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhh
Confidence 34566666667777777777777777765555666777777777778888888887775554321 1 0123333344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 267 LMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 267 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
....|.-.+++.+|...+.++...+ +.++..-|.-.-+..-.|+..+|++.++.|+..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455666777777877787777665 445555555444455567788888888888776
No 189
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.33 E-value=0.0037 Score=56.54 Aligned_cols=86 Identities=19% Similarity=0.123 Sum_probs=48.1
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHH
Q 008249 200 RVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQ 279 (572)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 279 (572)
+.+++++|+..|.+.++.. +-|.+-|..-..+|++.|.++.|++-.+..+..++ ....+|..|..+|...|++++
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp----~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP----HYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHccCcHHH
Confidence 4555556666665555532 22444455555556666666666665555555544 455556666666666666666
Q ss_pred HHHHHHHHHhC
Q 008249 280 ALALWNDMFQK 290 (572)
Q Consensus 280 A~~~~~~~~~~ 290 (572)
|++.|++.++.
T Consensus 168 A~~aykKaLel 178 (304)
T KOG0553|consen 168 AIEAYKKALEL 178 (304)
T ss_pred HHHHHHhhhcc
Confidence 66665555544
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.31 E-value=0.009 Score=47.36 Aligned_cols=91 Identities=26% Similarity=0.193 Sum_probs=57.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 008249 442 LILAETRGGSIFDAFSLKKEMLLDGIFPD--VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPD----IITYTELIKG 515 (572)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~ 515 (572)
+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++.... .|+ ......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 34456667777888888887777765544 334555666777777888888777777654 132 2222333445
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 008249 516 HCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 516 ~~~~g~~~~A~~~~~~m~~ 534 (572)
+...|+.++|++.+-....
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6677777777777766554
No 191
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.31 E-value=0.0036 Score=54.04 Aligned_cols=104 Identities=16% Similarity=0.215 Sum_probs=61.3
Q ss_pred ccHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhH
Q 008249 259 SDVITSTILMDSYFK-----NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVIT 333 (572)
Q Consensus 259 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 333 (572)
.+..+|..+++.|.+ .|.++-....+..|.+-|+..|..+|+.|++.+=+ |.+- |.. .
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-F 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-H
Confidence 455566666666554 46777777778888888888888888888777654 2211 110 0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 008249 334 YNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGD 381 (572)
Q Consensus 334 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 381 (572)
+..+..-| -.+.+-|.+++++|...|+-||..++..+++.+++.+.
T Consensus 108 fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111101 11234566777777777777777777777777655543
No 192
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.30 E-value=0.12 Score=46.27 Aligned_cols=80 Identities=14% Similarity=0.062 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKG--TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (572)
.|+. +..-.+.|++++|...|+.+..+. -+-...+...++-++-+.++++.|+..+++.....|......|...|.+
T Consensus 37 LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 37 LYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 3444 444678899999999999998762 1223455666777888999999999999999887776555567777777
Q ss_pred HHh
Q 008249 198 YCR 200 (572)
Q Consensus 198 ~~~ 200 (572)
++.
T Consensus 116 Ls~ 118 (254)
T COG4105 116 LSY 118 (254)
T ss_pred HHH
Confidence 664
No 193
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.29 E-value=0.033 Score=52.41 Aligned_cols=175 Identities=14% Similarity=0.086 Sum_probs=81.6
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQK----GTVPD-VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
.|....+.|-..|++++|...|....+. +-+.. ...|......|.+ +++++|.+ .|...
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~---------------~~~~A 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIE---------------CYEKA 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHH---------------HHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHH---------------HHHHH
Confidence 4666666777777777777777665432 10000 0111111111111 13333322 33334
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhC-CChhHHHHHHHHHHhCCCC--CCCccHHHHHHHHHHH
Q 008249 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKK-GLLGDAVKFLGEVLADDDG--KATSDVITSTILMDSY 271 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~ 271 (572)
+..|...|++..|-+.+..+ ...|-.. |++++|.+.|+++...... ....-..++..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 44555566655555544443 3345455 6777777777766542110 1001234555666667
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-----CHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 272 FKNGDKFQALALWNDMFQKNIQT-----DIV-AYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 272 ~~~g~~~~A~~~~~~~~~~~~~~-----~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
.+.|++++|.++|++........ +.. .+-..+-++...|++..|.+.+++....
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777777777666542111 111 1222233445566666666666666543
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.28 E-value=0.0011 Score=46.90 Aligned_cols=63 Identities=21% Similarity=0.282 Sum_probs=41.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHH
Q 008249 482 CNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRIL 547 (572)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 547 (572)
...|++++|+++|+++.... +-+...+..++.+|.+.|++++|.++++++... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 35677777777777777652 446666677777777777777777777777765 4554444433
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.27 E-value=0.0055 Score=56.37 Aligned_cols=104 Identities=12% Similarity=-0.027 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHH
Q 008249 437 FTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD--VFTYNLLIGASCNLGHIHLALQLYDEMLRRG--ITPDIITYTEL 512 (572)
Q Consensus 437 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l 512 (572)
..|...+..+.+.|++++|...|+.+.+.-+... ...+-.+...|...|++++|...|+.+.+.- -+.....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555544566778888888888777532211 2456677777777888888888888877641 11123445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChH
Q 008249 513 IKGHCARGNMKEAEEVFAKIQTLGLAIDHI 542 (572)
Q Consensus 513 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 542 (572)
+..+...|+.++|.++|+++.+. .|+..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 66677778888888888877775 45544
No 196
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.017 Score=52.72 Aligned_cols=116 Identities=16% Similarity=0.030 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHH
Q 008249 417 LSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLG---HIHLALQL 493 (572)
Q Consensus 417 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~ 493 (572)
.+....-++.-...++. |...|-.|..+|...|+.+.|..-|....+.. .+|...+..+..++.... .-.++..+
T Consensus 138 ~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 44444445544444443 77888888888888888888888888887752 235666666666655432 35678888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 494 YDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 494 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
|+++.... +-|+.+...|...+...|++.+|...|+.|.+.
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 88888763 556677777778888888888888888888886
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.26 E-value=0.0011 Score=46.94 Aligned_cols=52 Identities=21% Similarity=0.388 Sum_probs=27.2
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 235 KKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 235 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
+.|++++|.++|+++....+ .+...+..++.+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP----DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT----TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555555555555555443 44555555555555555555555555555544
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.25 E-value=0.048 Score=48.44 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=22.6
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 233 LCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ 289 (572)
Q Consensus 233 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 289 (572)
+...|++++|.+.|+.+....+ ..+......-.++.++.+.|+++.|...+++..+
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P-~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYP-NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444333 1112233333444444444444444444444443
No 199
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.24 E-value=0.19 Score=47.50 Aligned_cols=121 Identities=16% Similarity=0.116 Sum_probs=71.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 008249 407 IIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLD-GIFPD-VFTYNLLIGASCNL 484 (572)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~p~-~~~~~~li~~~~~~ 484 (572)
-..++.+.|+..++-.+++.+-+..+.|+. +. +..+.+.|+ .+..-+++.... .++|| ....-.+..+-...
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda 342 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDA 342 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence 345667777777777777777665544442 11 111233333 333333332211 23444 45555666777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHc
Q 008249 485 GHIHLALQLYDEMLRRGITPDIITYTELIKGHCAR-GNMKEAEEVFAKIQTL 535 (572)
Q Consensus 485 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 535 (572)
|++..|..--+...+ ..|....|..|.+.-... |+-.++...+.+..+.
T Consensus 343 ~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 343 GEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 888777776666655 367777777777765544 8888888888777764
No 200
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.24 E-value=0.0019 Score=45.18 Aligned_cols=56 Identities=20% Similarity=0.282 Sum_probs=31.0
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 231 HALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 231 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
..+.+.|++++|.+.|+++++..+ .+...+..+..++...|++++|...|+++.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P----~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDP----DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCST----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555555666666665555443 45555555555555555555555555555543
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.22 E-value=0.0066 Score=57.08 Aligned_cols=284 Identities=16% Similarity=0.092 Sum_probs=141.8
Q ss_pred HHHHhCCChhhHHHHHHHHHhCCCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHHhh----CCCC-CCHHHHHHHHHH
Q 008249 126 RDLCLGGKIGTALWLRRKMIQKGTVP---DVLTHNYLVNELCKIGDLEKADHVIREMSE----MRPS-PNCATYNAFITG 197 (572)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~li~~ 197 (572)
.-+|+.|+....+.+|+..++.|... =..+|..|.++|.-.+++++|++....=.. .|-+ -...+...|...
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 34788888888888888888876321 123455666777777777777654322100 0000 011122223333
Q ss_pred HHhcCCHhHHHHHHHHH----HHCCC-CCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH
Q 008249 198 YCRVNELDKALHLFSTM----ANNGI-RPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYF 272 (572)
Q Consensus 198 ~~~~g~~~~A~~~~~~m----~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (572)
+--.|.+++|+-...+- .+.|- ......+-.+...|...|+.-....- .+.+ . .+..+-.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p----ee~g--~--f~~ev~~------- 169 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP----EEKG--A--FNAEVTS------- 169 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh----hhcc--c--ccHHHHH-------
Confidence 44455566555443322 11110 11223333444444444431100000 0000 0 0000000
Q ss_pred hcCCHHHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH----HCCCC-CCHhHHHHHHHHHH
Q 008249 273 KNGDKFQALALWNDMF----QKNI-QTDIVAYNVLINGFCLNGDISSAFAYFCQML----KRGFL-PDVITYNTLLNCLC 342 (572)
Q Consensus 273 ~~g~~~~A~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~-p~~~~~~~ll~~~~ 342 (572)
.++.|.+.|.+=. +.|- -.--..|..|.+.|.-.|+++.|+...+.-. +-|-. .....+..+.+++.
T Consensus 170 ---al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 170 ---ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI 246 (639)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence 1122222222211 1110 0122355666666677778888776654322 22211 22445667777788
Q ss_pred HcCCHHHHHHHHHHHH----hCC-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHH
Q 008249 343 KQGKLDEASHFYGVLS----KTG-VAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEK----S-VVPEPHIWNVIIDGYG 412 (572)
Q Consensus 343 ~~g~~~~A~~~~~~~~----~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~li~~~~ 412 (572)
-.|+++.|.+.|+... +.| -........+|.+.|.-..++++|+.++.+-+.. + ..-....+-+|..+|.
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 8888888877776542 222 1234456677777777777888888777653321 1 1113456677788888
Q ss_pred hcCCHHHHHHHHHHH
Q 008249 413 RCGDLSNAFSIRDLM 427 (572)
Q Consensus 413 ~~g~~~~A~~~~~~~ 427 (572)
..|..++|....+.-
T Consensus 327 alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 327 ALGEHRKALYFAELH 341 (639)
T ss_pred hhhhHHHHHHHHHHH
Confidence 888888877766554
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.14 E-value=0.011 Score=55.55 Aligned_cols=131 Identities=16% Similarity=0.035 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH----HhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHH
Q 008249 404 WNVIIDGYGRCGDLSNAFSIRDLM----LSFGVS-SNVFTFNALILAETRGGSIFDAFSLKKEMLLD----G-IFPDVFT 473 (572)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~-~~p~~~~ 473 (572)
|..|.+.|.-.|+++.|+...+.- .+.|-. .....+..+..++.-.|+++.|.+.|+..... | -.....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 445555555566666666544321 222211 12345566666666667777777666654321 1 1112334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 474 YNLLIGASCNLGHIHLALQLYDEMLR----R-GITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
..+|.+.|.-..++++|+.++++-.. . ...-....+.+|..+|...|..++|+.+.+.-.+
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44566666666667777766655332 1 1122345666777777777777777766655443
No 203
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.04 E-value=0.0037 Score=44.28 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 008249 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG-DKFQALALWNDMF 288 (572)
Q Consensus 224 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 288 (572)
.+|..+...+...|++++|+..|++.++..+ .+...|..+..+|...| ++++|++.+++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p----~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDP----NNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHST----THHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3444445555555555555555555555443 44455555555555555 4555555555444
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.03 E-value=0.019 Score=52.85 Aligned_cols=98 Identities=20% Similarity=0.213 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHH
Q 008249 190 TYNAFITGYCRVNELDKALHLFSTMANNGIRPNR----VTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITST 265 (572)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 265 (572)
.|...+..+.+.|++++|...|+.+.+.. |+. ..+..+...|...|++++|...|+.+++..+ ..+.....+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHH
Confidence 34444444445566666666666666542 222 3455555666666666666666666665544 2223344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 266 ILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 266 ~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
.++..+...|+.++|.+.|+.+.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555555666666666666666554
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.24 Score=44.16 Aligned_cols=132 Identities=14% Similarity=0.106 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-
Q 008249 225 THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLI- 303 (572)
Q Consensus 225 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li- 303 (572)
..+.++.++.-.|.+.-...++.++++..+ . .++.....|++.-.+.||.+.|...|+...+..-..|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~-e--~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYP-E--QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCC-c--ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 344555666666666666777777766543 2 566666777777777777777777777655543333333333332
Q ss_pred ----HHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008249 304 ----NGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (572)
Q Consensus 304 ----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 360 (572)
..|.-++++.+|...+.++.... +-|+...|.-.-+..-.|+..+|.+.++.|...
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23444566666776666666542 223444444444445566677777777777664
No 206
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.92 E-value=0.028 Score=46.94 Aligned_cols=70 Identities=21% Similarity=0.305 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHhH
Q 008249 263 TSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK-----RGFLPDVIT 333 (572)
Q Consensus 263 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 333 (572)
+...++..+...|++++|.+..+.+.... +.+...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44555666666777777777777776665 55666777777777777777777777766543 366666544
No 207
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.90 E-value=0.45 Score=45.92 Aligned_cols=419 Identities=13% Similarity=0.085 Sum_probs=232.5
Q ss_pred hHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008249 136 TALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMA 215 (572)
Q Consensus 136 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (572)
+-+++-+++.+. |.|..+|-.|+.-|..+|.+++..+++++|..-.| --..+|...+++-...+++.....+|.+-+
T Consensus 27 D~lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp-~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 27 DELRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFP-IMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred hHHHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCc-cccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 344666666665 66889999999999999999999999999976333 234678888888888899999999999998
Q ss_pred HCCCCCCHhHHHHHHHHHHhCCCh------hHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH---hcCC------HHHH
Q 008249 216 NNGIRPNRVTHNILVHALCKKGLL------GDAVKFLGEVLADDDGKATSDVITSTILMDSYF---KNGD------KFQA 280 (572)
Q Consensus 216 ~~g~~p~~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~------~~~A 280 (572)
...+. ...|...+.--.+.+.. ....+.|+-.+.--. ..+.....|+..+..+- ..|. .+..
T Consensus 104 ~k~l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~-~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~i 180 (660)
T COG5107 104 KKSLN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAI-FEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKI 180 (660)
T ss_pred hhhcc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhccc-ccccccchHHHHHHHHHhccccccHHHHHHHHHH
Confidence 76444 55555555443333211 112233333333111 11133444555444322 2233 4445
Q ss_pred HHHHHHHHhCCCCC------CHHHHHHHHHHHHh---CC----CHHHHHHHHHHHHH--CCCC----CCHhHHHHH----
Q 008249 281 LALWNDMFQKNIQT------DIVAYNVLINGFCL---NG----DISSAFAYFCQMLK--RGFL----PDVITYNTL---- 337 (572)
Q Consensus 281 ~~~~~~~~~~~~~~------~~~~~~~li~~~~~---~g----~~~~a~~~~~~m~~--~g~~----p~~~~~~~l---- 337 (572)
.+.+.++..-.+.- |-..|..=++.... .| -+-.|.+.++++.. .|+. .+..+++.+
T Consensus 181 R~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s 260 (660)
T COG5107 181 RNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTS 260 (660)
T ss_pred HHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccc
Confidence 55565555431110 11111111111100 01 12345555555432 2322 122233221
Q ss_pred -------HHHHHHc-----CC-H-HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008249 338 -------LNCLCKQ-----GK-L-DEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHI 403 (572)
Q Consensus 338 -------l~~~~~~-----g~-~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 403 (572)
|+-=... |+ . ....-++++.... +.-....|--.-..+...++-+.|++......+- .|+ .
T Consensus 261 ~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L 335 (660)
T COG5107 261 DSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--L 335 (660)
T ss_pred cchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--h
Confidence 1110000 01 0 1111122222221 2223334444444455667777777766554332 122 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH-------hC-------CC---------------CCCHHHHHHHHHHHHhcCCHHH
Q 008249 404 WNVIIDGYGRCGDLSNAFSIRDLML-------SF-------GV---------------SSNVFTFNALILAETRGGSIFD 454 (572)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~~~-------~~-------~~---------------~p~~~~~~~ll~~~~~~g~~~~ 454 (572)
-..+...|.-..+.+.....|+... +. +. ..-...|...+..-.+...++.
T Consensus 336 ~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~a 415 (660)
T COG5107 336 TMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEA 415 (660)
T ss_pred heeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHH
Confidence 1111112222222222221111110 00 00 0123456667777777788999
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHH
Q 008249 455 AFSLKKEMLLDG-IFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITY-TELIKGHCARGNMKEAEEVFAKI 532 (572)
Q Consensus 455 a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m 532 (572)
|..+|-++.+.+ +.++...+++++..++ .|++..|..+|+--..+ -||...| +-.+..+.+-++-+.|..+|+..
T Consensus 416 aR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFets 492 (660)
T COG5107 416 ARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETS 492 (660)
T ss_pred HHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 999999999888 6788888999888776 58889999999876554 3555444 56777788899999999999977
Q ss_pred HHcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 533 QTLGLAID--HIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 533 ~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
... +..+ ..+|..+++-=..-|+...+..+=+++.+
T Consensus 493 v~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 493 VER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 764 3334 56799999988899999999888777754
No 208
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.89 E-value=0.46 Score=45.94 Aligned_cols=393 Identities=14% Similarity=0.112 Sum_probs=204.7
Q ss_pred HHHHHHHH--HhCCChhhHHHHHHHHHhC--CCCC------------ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCC
Q 008249 121 HVAVIRDL--CLGGKIGTALWLRRKMIQK--GTVP------------DVLTHNYLVNELCKIGDLEKADHVIREMSEMRP 184 (572)
Q Consensus 121 ~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 184 (572)
|-.|..++ .+.+++++|.+.+...... +..| |-..-+..++.+.+.|++.+++.+++++...-.
T Consensus 80 ~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll 159 (549)
T PF07079_consen 80 YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL 159 (549)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 55555443 5678999999888877655 3222 112224567788899999999988888766443
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH---CCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 008249 185 ----SPNCATYNAFITGYCRVNELDKALHLFSTMAN---NGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKA 257 (572)
Q Consensus 185 ----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 257 (572)
..+..+|+.++-.+++. .|-++++ ..+-|+ |--++-.|.+.=..-++.. +++. .
T Consensus 160 krE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~~~-Y~k~------~- 220 (549)
T PF07079_consen 160 KRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQRP-YEKF------I- 220 (549)
T ss_pred hhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHHHhhch-HHhh------C-
Confidence 37888999877777654 2333322 112222 2233333432211111100 0000 0
Q ss_pred CccHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC----CC
Q 008249 258 TSDVITSTILMDSYFKNG--DKFQALALWNDMFQKNIQTDI-VAYNVLINGFCLNGDISSAFAYFCQMLKRGFL----PD 330 (572)
Q Consensus 258 ~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----p~ 330 (572)
|.......++....-.. +..--.++++.....-+.|+- -....+...+.. +.+++..+-+.+....+. -=
T Consensus 221 -peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~l 297 (549)
T PF07079_consen 221 -PEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEEL 297 (549)
T ss_pred -cHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHH
Confidence 22223333333222211 111112222222222233432 222333333333 444444444443332111 12
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHH-------HHHHHHH----cCCHHHHHHHHHHHHhCCCCC
Q 008249 331 VITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKT-------IIQGLCI----HGDIVKAREFLLSMLEKSVVP 399 (572)
Q Consensus 331 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------li~~~~~----~g~~~~A~~~~~~~~~~~~~~ 399 (572)
..++..++....+.++...|.+.+..+... .|+...-.. +.+..+. .-+..+-+.+++.....++.
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD- 374 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID- 374 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-
Confidence 456778888888889999998888877663 344332222 2222221 11223334455555544332
Q ss_pred CHHHHHHHHH---HHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHhc---CCHHHHHHHHHHHHhCCCC
Q 008249 400 EPHIWNVIID---GYGRCGD-LSNAFSIRDLMLSFGVSSNVFTFNALI----LAETRG---GSIFDAFSLKKEMLLDGIF 468 (572)
Q Consensus 400 ~~~~~~~li~---~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~ll----~~~~~~---g~~~~a~~~~~~m~~~~~~ 468 (572)
.......|+. -+-+.|. -++|..+++.+.+... -|...-|.+. ..|..+ ..+.+-..+-.-+.+.|+.
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 1122222222 2333444 7888999888877422 2333333222 233322 2344444444445566777
Q ss_pred CC----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChH
Q 008249 469 PD----VFTYNLLIGA--SCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHI 542 (572)
Q Consensus 469 p~----~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 542 (572)
|- ...-|.|.++ +...|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|.+++..+ +|+..
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~ 526 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNER 526 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchh
Confidence 64 3344555544 4568999988766555555 6899999999999999999999999988764 55665
Q ss_pred HHHH
Q 008249 543 PFRI 546 (572)
Q Consensus 543 ~~~~ 546 (572)
++++
T Consensus 527 ~~ds 530 (549)
T PF07079_consen 527 MRDS 530 (549)
T ss_pred hHHH
Confidence 5553
No 209
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.89 E-value=0.4 Score=46.11 Aligned_cols=93 Identities=16% Similarity=0.076 Sum_probs=54.7
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhCC---CCCChhhHHHHHHHHHH---cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008249 124 VIRDLCLGGKIGTALWLRRKMIQKG---TVPDVLTHNYLVNELCK---IGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (572)
Q Consensus 124 li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (572)
++-+|....+++..+++.+.+.... +..+...-....-++-+ .|+.++|++++..+......++..+|..+.+.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3335777777888888888777651 11122222334445555 67778888887775555555677777766665
Q ss_pred HHh---------cCCHhHHHHHHHHHHH
Q 008249 198 YCR---------VNELDKALHLFSTMAN 216 (572)
Q Consensus 198 ~~~---------~g~~~~A~~~~~~m~~ 216 (572)
|-. ....++|...|.+.-+
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 543 1134556666655443
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.86 E-value=0.0034 Score=45.83 Aligned_cols=64 Identities=23% Similarity=0.226 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008249 507 ITYTELIKGHCARGNMKEAEEVFAKIQTL----GLA-ID-HIPFRILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 507 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
.+|+.+...|...|++++|+..+++..+. |-. |+ ..++..++..+...|++++|.+++++.++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46677777888888888888888777643 211 12 345677777888888888888888887653
No 211
>PRK15331 chaperone protein SicA; Provisional
Probab=96.85 E-value=0.049 Score=45.19 Aligned_cols=88 Identities=10% Similarity=-0.039 Sum_probs=57.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008249 446 ETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEA 525 (572)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 525 (572)
+...|++++|..+|+-+...+.. |..-|..|..++-..+++++|+..|......+ .-|+..+.....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 44567777777777776654332 44445566666666777777777777766543 34445555667777777777777
Q ss_pred HHHHHHHHHc
Q 008249 526 EEVFAKIQTL 535 (572)
Q Consensus 526 ~~~~~~m~~~ 535 (572)
+..|+.....
T Consensus 125 ~~~f~~a~~~ 134 (165)
T PRK15331 125 RQCFELVNER 134 (165)
T ss_pred HHHHHHHHhC
Confidence 7777777663
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.84 E-value=0.39 Score=48.36 Aligned_cols=104 Identities=15% Similarity=0.121 Sum_probs=51.7
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008249 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (572)
+-...+.+-+..|..+|.+++|.++-- .|+ ...-|..|...-...=+++-|.+.+.++..
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iac----lgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRd-------------- 613 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIAC----LGV--TDTDWRELAMEALEALDFETARKAYIRVRD-------------- 613 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccc----cce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhc--------------
Confidence 333445555566777777777765422 121 222344444333333344444444444322
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHH
Q 008249 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGE 248 (572)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 248 (572)
-.+-+...-++++++.|-.|+... +...++-.|++.+|.++|.+
T Consensus 614 ------l~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 614 ------LRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ------cHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 112233334566677776666653 33445556777777777644
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.78 E-value=0.011 Score=42.37 Aligned_cols=56 Identities=16% Similarity=0.107 Sum_probs=39.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 479 GASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
..|.+.+++++|.++++++...+ |.+...|.....++...|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667777777777777777653 445566667777777777777777777777765
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.78 E-value=0.0064 Score=43.65 Aligned_cols=59 Identities=14% Similarity=0.023 Sum_probs=50.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008249 513 IKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRNK 572 (572)
Q Consensus 513 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 572 (572)
...|.+.+++++|.++++++...+ +.+...|......+.+.|++++|.+.|+++++.++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 457889999999999999999973 33666788899999999999999999999987653
No 215
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=1 Score=47.11 Aligned_cols=181 Identities=13% Similarity=0.113 Sum_probs=118.9
Q ss_pred HhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCh--hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008249 119 RRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDV--LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFIT 196 (572)
Q Consensus 119 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 196 (572)
.....-+..+++...+..|+.+...- +..++. .......+-+.+.|++++|..-+-+-... .+|. .+|.
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 34567888899999999999886542 222222 23344556667889999998877665432 1222 3566
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC
Q 008249 197 GYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD 276 (572)
Q Consensus 197 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 276 (572)
-|....+..+--.+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|... -| ....+..+.+.+-
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd---~e~al~Ilr~sny 478 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FD---VETALEILRKSNY 478 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--ee---HHHHHHHHHHhCh
Confidence 677777788888889999998876 66666789999999999998887776654 22101 12 2344555666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008249 277 KFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQML 323 (572)
Q Consensus 277 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 323 (572)
.++|..+-.+... +......+ +-..+++++|++++..+.
T Consensus 479 l~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 479 LDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 6666655544432 33333333 345688999999887653
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.66 E-value=0.44 Score=48.05 Aligned_cols=195 Identities=15% Similarity=0.127 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HhhHH-----HHHHHHHHcCCHHHHHH
Q 008249 314 SAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPD-QISYK-----TIIQGLCIHGDIVKARE 387 (572)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~g~~~~A~~ 387 (572)
+...-+++++++|-.|+... +...++-.|++.+|.++|.+- |.... ...|+ -..+-+...|..++-..
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKm 691 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKM 691 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHH
Confidence 34444567777777777643 334556677777777777543 21100 00111 01122223333333222
Q ss_pred HHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH------HHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHH
Q 008249 388 FLLSMLE--KSVVPEPHIWNVIIDGYGRCGDLSNAFSIRD------LMLSFGV---SSNVFTFNALILAETRGGSIFDAF 456 (572)
Q Consensus 388 ~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~------~~~~~~~---~p~~~~~~~ll~~~~~~g~~~~a~ 456 (572)
+.++--+ .+++- -.+....+...|+.++|..+.- .+.+-+- ..+..+...+...+.+...+.-|-
T Consensus 692 L~RKRA~WAr~~ke----PkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAa 767 (1081)
T KOG1538|consen 692 LIRKRADWARNIKE----PKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAA 767 (1081)
T ss_pred HHHHHHHHhhhcCC----cHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHH
Confidence 2222111 11110 1223344555666666655421 1111111 113334444444444455555666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 457 SLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAK 531 (572)
Q Consensus 457 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 531 (572)
++|..|-+. ..+++.....+++++|..+-++..+ +.||+ |.....-++...++++|.+.|.+
T Consensus 768 eIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dV--y~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 768 EIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDV--YMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred HHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccc--cchHHHHhhhhhhHHHHHHHHHH
Confidence 666555421 2455556666677777666655544 23333 23333444445555555544443
No 217
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.61 E-value=0.5 Score=45.53 Aligned_cols=26 Identities=12% Similarity=0.201 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 404 WNVIIDGYGRCGDLSNAFSIRDLMLS 429 (572)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~~~~ 429 (572)
+.+++.++.-.|++++|.+..+.|.+
T Consensus 308 ~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 308 VATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 34444444444455555554444444
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.57 E-value=0.029 Score=46.84 Aligned_cols=71 Identities=24% Similarity=0.266 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChHHH
Q 008249 473 TYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT-----LGLAIDHIPF 544 (572)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 544 (572)
....++..+...|++++|..+.+.+.... |.|...|..++.+|...|+..+|.+.|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34456666677788888888888877753 55667778888888888888888888777643 4777776653
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=96.36 E-value=0.1 Score=43.31 Aligned_cols=86 Identities=10% Similarity=-0.093 Sum_probs=35.0
Q ss_pred HHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 008249 128 LCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKA 207 (572)
Q Consensus 128 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 207 (572)
+.+.|++++|..+|.-+...+ +-+..-|..|..++-..+++++|...+......++ -|...+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 344444444444444444332 11233333344444444444444444444333222 1222233334444444444444
Q ss_pred HHHHHHHH
Q 008249 208 LHLFSTMA 215 (572)
Q Consensus 208 ~~~~~~m~ 215 (572)
...|+...
T Consensus 125 ~~~f~~a~ 132 (165)
T PRK15331 125 RQCFELVN 132 (165)
T ss_pred HHHHHHHH
Confidence 44444443
No 220
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.30 E-value=1.1 Score=42.78 Aligned_cols=109 Identities=17% Similarity=0.068 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008249 403 IWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASC 482 (572)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 482 (572)
+.+.-+.-+...|+...|..+..+. .+ |+..-|...+.+++..++|++-.++... +-.+.-|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444556666778877777775544 23 6788888888888888888877665432 123467778888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 483 NLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAK 531 (572)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 531 (572)
+.|+..+|..+..++ + +..-+..|.+.|++.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888877662 1 24566677788888887765443
No 221
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.28 E-value=1.1 Score=42.70 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008249 370 KTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRG 449 (572)
Q Consensus 370 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 449 (572)
+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-...... . -++..|-..+.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHC
Confidence 333444455566555555544331 24666666666666666666655544321 1 1235566666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008249 450 GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQL 493 (572)
Q Consensus 450 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 493 (572)
|...+|..+...+ . +..-+..|.++|++.+|.+.
T Consensus 251 ~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 251 GNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 6666666665541 1 13344556666666666554
No 222
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.18 E-value=0.9 Score=40.83 Aligned_cols=223 Identities=20% Similarity=0.075 Sum_probs=113.3
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 008249 310 GDISSAFAYFCQMLKRGFL-PDVITYNTLLNCLCKQGKLDEASHFYGVLSKT-GVAPDQISYKTIIQGLCIHGDIVKARE 387 (572)
Q Consensus 310 g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 387 (572)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...++...+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555555555443221 12445555566666666677666666665542 123344555555556666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 388 FLLSMLEKSVVPEPHIWNVIID-GYGRCGDLSNAFSIRDLMLSFGV--SSNVFTFNALILAETRGGSIFDAFSLKKEMLL 464 (572)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 464 (572)
.+.........+ ......... .+...|+++.|...++....... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666666544332 111222222 55666666666666666644211 01222333333334455666666666666555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 465 DGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPD-IITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 465 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
.........+..+...+...++++.|...+...... .|+ ...+..+...+...|..+++...+.+....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 321112445555555555666666666666666553 222 333333444444445566666666555554
No 223
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=2.1 Score=44.36 Aligned_cols=347 Identities=11% Similarity=0.029 Sum_probs=181.3
Q ss_pred hCCCCCChhhHH-----HHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH--hHHHHHHHHHHHCC
Q 008249 146 QKGTVPDVLTHN-----YLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNEL--DKALHLFSTMANNG 218 (572)
Q Consensus 146 ~~g~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g 218 (572)
..|++.+..-|. .+++.+...+.+..|+++-..+...-... ...|.....-+.+..+. +++++..++=....
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 446666666554 46778888899999998888775422211 45566666666665321 23333333322222
Q ss_pred CCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008249 219 IRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKAT--SDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDI 296 (572)
Q Consensus 219 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 296 (572)
. .....|..+.+.....|+.+-|..+++.=...+. .++ .+..-+..-+.-..+.|+.+-...++-.+... .+.
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~-qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~ 578 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGE-QVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNR 578 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccc-hhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHH
Confidence 2 3455678888878888999999888764322211 000 01111222222333334444333333333321 011
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH--HHHhC-CCCCCHhhHHHHH
Q 008249 297 VAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYG--VLSKT-GVAPDQISYKTII 373 (572)
Q Consensus 297 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~--~~~~~-~~~~~~~~~~~li 373 (572)
..+.. -..+...|..+|.+..+.. |..+ +-+.| +.++-.++..-|. ..... .+.+-........
T Consensus 579 s~l~~------~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a 645 (829)
T KOG2280|consen 579 SSLFM------TLRNQPLALSLYRQFMRHQ---DRAT---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKTAA 645 (829)
T ss_pred HHHHH------HHHhchhhhHHHHHHHHhh---chhh---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHHHH
Confidence 11111 1123344556666555421 1111 11122 2222222222111 10000 0111122223333
Q ss_pred HHHHHcCCHHH----------HHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008249 374 QGLCIHGDIVK----------AREFLLSMLE-KSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNAL 442 (572)
Q Consensus 374 ~~~~~~g~~~~----------A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 442 (572)
..+.+.....- -+++.+.+.. .+......+.+--+.-+...|+..+|.++-.+.+- ||...|-.-
T Consensus 646 ~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk 721 (829)
T KOG2280|consen 646 NAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLK 721 (829)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHH
Confidence 44444333111 1122222221 12222333455556667778888888888776543 788888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008249 443 ILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNM 522 (572)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 522 (572)
+.+++..+++++-+++-+.+. .+.-|...+.+|.+.|+.++|.+++-+... .. -...+|.+.|++
T Consensus 722 ~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~ 786 (829)
T KOG2280|consen 722 LTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDV 786 (829)
T ss_pred HHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccH
Confidence 899999999988777665543 245567788889999999999988766532 11 567788888888
Q ss_pred HHHHHHHH
Q 008249 523 KEAEEVFA 530 (572)
Q Consensus 523 ~~A~~~~~ 530 (572)
.+|.++--
T Consensus 787 ~eAad~A~ 794 (829)
T KOG2280|consen 787 KEAADLAA 794 (829)
T ss_pred HHHHHHHH
Confidence 88876543
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.06 E-value=0.033 Score=40.53 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 262 ITSTILMDSYFKNGDKFQALALWNDM 287 (572)
Q Consensus 262 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 287 (572)
.++..+..+|...|++++|++.+++.
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444444444444444443
No 225
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.94 E-value=1.6 Score=41.55 Aligned_cols=120 Identities=17% Similarity=0.090 Sum_probs=65.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcC
Q 008249 373 IQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS-FGVSS-NVFTFNALILAETRGG 450 (572)
Q Consensus 373 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p-~~~~~~~ll~~~~~~g 450 (572)
..++.+.|+..++-.+++.+-+..+.|+. +... .+.+.|+. +..-+++..+ ...+| +......+..+-...|
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~i--a~lY--~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~ 343 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPDI--ALLY--VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAG 343 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChHH--HHHH--HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence 34566777777777777777766444432 2221 22344432 2222222221 11222 3445555666666777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC
Q 008249 451 SIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN-LGHIHLALQLYDEMLRR 500 (572)
Q Consensus 451 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~ 500 (572)
++..|..--+.... ..|....|..|.+.--. .|+-.++...+.+.++.
T Consensus 344 e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 344 EFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 77776665555544 35666677666665443 47777777777777653
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.93 E-value=0.045 Score=53.24 Aligned_cols=64 Identities=17% Similarity=0.097 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 470 DVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI----ITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.++++.+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4778999999999999999999999999885 5664 35899999999999999999999999986
No 227
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.92 E-value=1.8 Score=42.07 Aligned_cols=430 Identities=13% Similarity=0.079 Sum_probs=224.4
Q ss_pred HHhCCChhhHHHHHHHHHhCCCCCC------hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH--HH
Q 008249 128 LCLGGKIGTALWLRRKMIQKGTVPD------VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG--YC 199 (572)
Q Consensus 128 ~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~ 199 (572)
+.+++++.+|..+|.++-+.- ..+ ...-+.++++|.-. +.+.....+....+..+ + ..|-.+..+ +-
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~--~-s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG--K-SAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC--C-chHHHHHHHHHHH
Confidence 456678888888887776542 112 22335567777653 45555444445444332 1 223333322 22
Q ss_pred hcCCHhHHHHHHHHHHHC--CCCC------------CHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC-CCCccHHHH
Q 008249 200 RVNELDKALHLFSTMANN--GIRP------------NRVTHNILVHALCKKGLLGDAVKFLGEVLADDDG-KATSDVITS 264 (572)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 264 (572)
+.+++.+|.+.+..-... +..| |...=+..++.+...|++.+++.+++++...-.. ....+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 567788888777766544 2221 1111234566777888888888888777653210 111567777
Q ss_pred HHHHHHHHhcCC---------------HHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 008249 265 TILMDSYFKNGD---------------KFQALALWNDMFQK------NIQTDIVAYNVLINGFCLN--GDISSAFAYFCQ 321 (572)
Q Consensus 265 ~~l~~~~~~~g~---------------~~~A~~~~~~~~~~------~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~ 321 (572)
+.++-.+.+.-- ++.+.-..++|... .+.|.......++....-. .+..--+++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 775554443211 11122222222211 1223333333333332221 122223333333
Q ss_pred HHHCCCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008249 322 MLKRGFLPDVI-TYNTLLNCLCKQGKLDEASHFYGVLSKTGVA----PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKS 396 (572)
Q Consensus 322 m~~~g~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 396 (572)
....-+.|+.. ....+...+.+ +.+++..+-+.+....+. .=..++..++....+.++...|.+.+.-+.-.+
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 33444555532 22334444443 555555555554433211 123467777777788888888888887776543
Q ss_pred CCCCHH-----HHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHhcCC-HHHHHHHHHHHH
Q 008249 397 VVPEPH-----IWNVIIDGYGR----CGDLSNAFSIRDLMLSFGVSSNVFTFNALI---LAETRGGS-IFDAFSLKKEML 463 (572)
Q Consensus 397 ~~~~~~-----~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll---~~~~~~g~-~~~a~~~~~~m~ 463 (572)
+..... +-..+.+..+. .-+...-..+|+......+. ....-..|+ .-+.+.|. -++|.++++...
T Consensus 329 p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il 407 (549)
T PF07079_consen 329 PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL 407 (549)
T ss_pred CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 321110 01122222221 11233344556666555432 111222232 33455555 889999999888
Q ss_pred hCCCCC-CHHHHHHH----HHHHHh---cCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHH--HHhcCCHHHHHHHH
Q 008249 464 LDGIFP-DVFTYNLL----IGASCN---LGHIHLALQLYDEMLRRGITPDI----ITYTELIKG--HCARGNMKEAEEVF 529 (572)
Q Consensus 464 ~~~~~p-~~~~~~~l----i~~~~~---~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~--~~~~g~~~~A~~~~ 529 (572)
+- .| |...-|.+ =..|.. ...+..-..+-+-..+.|++|-. ..-|.|.+| +..+|++.++.-.-
T Consensus 408 ~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys 485 (549)
T PF07079_consen 408 QF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYS 485 (549)
T ss_pred Hh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 74 33 33332222 222322 23344444444445567877743 344555544 45789999987655
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 530 AKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 530 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
.-+.+ +.|.+.+|..++-++....++++|..++.++.-
T Consensus 486 ~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 486 SWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 55554 689999999999999999999999999987643
No 228
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.91 E-value=0.59 Score=47.43 Aligned_cols=164 Identities=18% Similarity=0.168 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCC-CCCCH-----hHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCCcc
Q 008249 191 YNAFITGYCRVNELDKALHLFSTMANNG-IRPNR-----VTHNILVHALCK----KGLLGDAVKFLGEVLADDDGKATSD 260 (572)
Q Consensus 191 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 260 (572)
...++....-.|+-+.+++++.+..+.+ +.-.. -+|...+..++. ....+.|.++++.+.+..| ..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP----~s 266 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP----NS 266 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC----Cc
Confidence 3355555566666666666666654432 11111 123333332322 3456677777777776553 34
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 008249 261 VITSTILMDSYFKNGDKFQALALWNDMFQKN--I-QTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTL 337 (572)
Q Consensus 261 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 337 (572)
....-.-.+.+...|++++|++.|++..... . ......+--+.-.+.-.++|++|.+.|..+.+.. .-+..+|.-+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 4444444556666777777777777544311 0 1123344445556666777777777777777642 1223333333
Q ss_pred HH-HHHHcCCH-------HHHHHHHHHHHh
Q 008249 338 LN-CLCKQGKL-------DEASHFYGVLSK 359 (572)
Q Consensus 338 l~-~~~~~g~~-------~~A~~~~~~~~~ 359 (572)
.. ++...|+. ++|.++|.++..
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 22 33445555 677777776644
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.88 E-value=0.2 Score=48.95 Aligned_cols=66 Identities=14% Similarity=0.013 Sum_probs=47.1
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCCh----hhHHHHHHHHHHcCChhHHHHHHHHHhhC
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDV----LTHNYLVNELCKIGDLEKADHVIREMSEM 182 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 182 (572)
+.+...|+.+..+|.+.|++++|+..|++.++.. |+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3355677777778888888888888887777653 442 34777777777777777777777777664
No 230
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.79 E-value=0.27 Score=39.42 Aligned_cols=98 Identities=14% Similarity=0.035 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008249 435 NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIK 514 (572)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 514 (572)
|..++..++.++++.|+.+....+++..-. +.++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345677777777777777777777655432 2211100 0000 0012234577777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHH
Q 008249 515 GHCARGNMKEAEEVFAKIQTL-GLAIDHIPFRILKKRYR 552 (572)
Q Consensus 515 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~ 552 (572)
+|+..|++..|.++++...+. +++.+..+|..|++-..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 777777777777777776653 55556666776665433
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.8 Score=41.94 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=69.8
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHH
Q 008249 163 LCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDA 242 (572)
Q Consensus 163 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 242 (572)
....|++.+|..+|.......++ +...--.++.+|...|+++.|..++..+...--.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34455666666666665555443 23444455566666666666666666554331111111212223333444433333
Q ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCC
Q 008249 243 VKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN-IQTDIVAYNVLINGFCLNGD 311 (572)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~ 311 (572)
..+-...-. ++ .|...-..+...+...|+.++|++.+-.+.+++ -.-|...-..++..+.-.|.
T Consensus 223 ~~l~~~~aa-dP----dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 223 QDLQRRLAA-DP----DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHh-CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 333333322 11 455566666666666666666666655555431 12344455555555555553
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=1.6 Score=40.09 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=25.4
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 234 CKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMF 288 (572)
Q Consensus 234 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 288 (572)
...|+..+|..+|.......+ .+...-..++.+|...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~----~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAP----ENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhCc----ccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 344555555555555554443 333444445555555555555555555544
No 233
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.72 E-value=0.26 Score=39.99 Aligned_cols=83 Identities=13% Similarity=0.099 Sum_probs=61.5
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKG--TVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (572)
.+-.-.....+.|++++|.+.|+.+..+- .+-...+...++.+|.+.|+++.|...+++..+..|..--..|...+.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 34444555678899999999999998871 1223456677889999999999999999999998876545566666666
Q ss_pred HHhcC
Q 008249 198 YCRVN 202 (572)
Q Consensus 198 ~~~~g 202 (572)
++...
T Consensus 92 L~~~~ 96 (142)
T PF13512_consen 92 LSYYE 96 (142)
T ss_pred HHHHH
Confidence 65543
No 234
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.72 E-value=0.21 Score=45.20 Aligned_cols=99 Identities=19% Similarity=0.146 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC--CCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHH
Q 008249 190 TYNAFITGYCRVNELDKALHLFSTMANNGIR--PNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTIL 267 (572)
Q Consensus 190 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 267 (572)
.|+.-+..+ +.|++..|.+.|...++.... -....+--|..++...|++++|..+|..+.+..+ ..+.-+...--|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P-~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP-KSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC-CCCCChHHHHHH
Confidence 455444333 555566666666666654211 1123344566666666666666666666666555 333444555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 008249 268 MDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 268 ~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
..+..+.|+.++|...|+++.++
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 66666666666666666666654
No 235
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.67 E-value=0.22 Score=40.01 Aligned_cols=99 Identities=20% Similarity=0.199 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008249 400 EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIG 479 (572)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 479 (572)
|..++..++.++++.|+.+....+.+.. .|+.++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 4567899999999999999999888654 344332110 0010 1123457899999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh
Q 008249 480 ASCNLGHIHLALQLYDEMLR-RGITPDIITYTELIKGHCA 518 (572)
Q Consensus 480 ~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~ 518 (572)
+|+..|++..|+++.+...+ .+++.+..+|..|+.-...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999876 4677788889888865443
No 236
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.64 E-value=0.9 Score=37.43 Aligned_cols=126 Identities=9% Similarity=0.060 Sum_probs=79.2
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008249 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR 200 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 200 (572)
-..+|..+.+.+.+..+..+++.+...+ ..++..++.++..|++.+ .++..+.++. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3467777877888888888888888776 367778888888888764 3333344332 1223334456777777
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhC-CChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH
Q 008249 201 VNELDKALHLFSTMANNGIRPNRVTHNILVHALCKK-GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYF 272 (572)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (572)
.+.++++.-++.++.. +...+..+... ++++.|.+++.+. .+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~---------~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ---------NNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC---------CCHHHHHHHHHHHH
Confidence 7777788777776632 11222223333 6777777776542 44556666665554
No 237
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.27 Score=46.86 Aligned_cols=61 Identities=16% Similarity=0.050 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 226 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
+..+.-++.+.+++.+|++..+..+..++ .|+....--..++...|+++.|+..|+++.+.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~----~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDP----NNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCC----CchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44444445555555555555555555443 44444444455555555555555555555544
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.26 Score=47.02 Aligned_cols=140 Identities=14% Similarity=0.022 Sum_probs=81.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008249 406 VIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLG 485 (572)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 485 (572)
.-.+.|.+.|++..|...|++....=- |...-+.++..... ..-...+..|.-++.+.+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~-------------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLE-------------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLK 271 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhh-------------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhh
Confidence 345677788888888888877654200 00001111111111 012234556666777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHH-HHHHHHHHHhcCC-HHHHHHH
Q 008249 486 HIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIP-FRILKKRYRRMKE-SDKARDI 563 (572)
Q Consensus 486 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~g~-~~~A~~~ 563 (572)
++.+|++.-+...+.+ ++|......-..+|...|+++.|+..|+++++. .|+... -.-|+..-.+..+ .++..++
T Consensus 272 ~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~ 348 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKM 348 (397)
T ss_pred hHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777764 566666666777777777788888877777775 454433 3344444333333 3344677
Q ss_pred HHHHHh
Q 008249 564 HQKWLL 569 (572)
Q Consensus 564 ~~~~l~ 569 (572)
|.+|+.
T Consensus 349 y~~mF~ 354 (397)
T KOG0543|consen 349 YANMFA 354 (397)
T ss_pred HHHHhh
Confidence 777764
No 239
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.61 E-value=3 Score=42.21 Aligned_cols=410 Identities=11% Similarity=0.064 Sum_probs=229.6
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChh-hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVL-THNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
.+...|+.||.---...+.+.+...++.++.. .|... -|......=.+.|..+.+.++|++-...-| .++..|...
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip-~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIP-LSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh-hHHHHHHHH
Confidence 45557888887666666667777888887765 35444 444555556778899999999998877544 677777776
Q ss_pred HHHHHh-cCCHhHHHHHHHHHHHC-CCC-CCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH
Q 008249 195 ITGYCR-VNELDKALHLFSTMANN-GIR-PNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSY 271 (572)
Q Consensus 195 i~~~~~-~g~~~~A~~~~~~m~~~-g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (572)
...++. .|+.+.....|+..+.. |.. -....|...|..-...+++.....+++.+++... .....+-.--..+
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~----~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL----HQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh----hHhHHHHHHHHHH
Confidence 665554 47788888888887653 322 1345577777777778888888888888887432 1111111111111
Q ss_pred HhcC------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhH--HHHHH-----
Q 008249 272 FKNG------DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVIT--YNTLL----- 338 (572)
Q Consensus 272 ~~~g------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll----- 338 (572)
.... ..+++.++-...... ..-...+...+-.+ ..+...+-+.+..+ .+.+-
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~--~~v~~~~~~s~~l~~~~~~l~~~~~~ 260 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELE--IGVKDSTDPSKSLTEEKTILKRIVSI 260 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHH--HHHhhccCccchhhHHHHHHHHHHHH
Confidence 1111 122222221111110 00000111111111 11111111111111 11111
Q ss_pred --HHHHHcCCHHHHHHHHHHHHhCC---C----CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008249 339 --NCLCKQGKLDEASHFYGVLSKTG---V----APDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIID 409 (572)
Q Consensus 339 --~~~~~~g~~~~A~~~~~~~~~~~---~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 409 (572)
..+-..-...+....++.-++.. + +++..+|...+..-.+.|+.+...-++++..-- +..-...|-..+.
T Consensus 261 ~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~ 339 (577)
T KOG1258|consen 261 HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYAR 339 (577)
T ss_pred HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHH
Confidence 11122222223333344333321 1 234578888999999999999999999988652 1123344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCC
Q 008249 410 GYGRCGDLSNAFSIRDLMLSFGVS--SNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFT-YNLLIGASCNLGH 486 (572)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~ 486 (572)
-....|+.+-|..++....+...+ |....+.+.+ .-..|++..|..+++..... . |+..- -..-+....+.|+
T Consensus 340 ~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~ 415 (577)
T KOG1258|consen 340 WMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGN 415 (577)
T ss_pred HHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcc
Confidence 555669999998888777664332 3333333332 23457999999999999876 3 66432 2233445567888
Q ss_pred HHHHHH---HHHHHHHCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 008249 487 IHLALQ---LYDEMLRRGITPDIITYTELIK-----GHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMK 555 (572)
Q Consensus 487 ~~~A~~---~~~~m~~~g~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 555 (572)
.+.+.. ++..... | .-+..+...+.- .+.-.++.+.|..++.++... ++++...|..+++.....+
T Consensus 416 ~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 416 LEDANYKNELYSSIYE-G-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 888873 3333222 1 222222222222 233467899999999999986 5667777888888776655
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.60 E-value=0.39 Score=43.46 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CC-CHhHHHHHH
Q 008249 155 THNYLVNELCKIGDLEKADHVIREMSEMRPS--PNCATYNAFITGYCRVNELDKALHLFSTMANNGI-RP-NRVTHNILV 230 (572)
Q Consensus 155 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~ll 230 (572)
.|+.-+..| +.|++..|...|....+..|. -....+.-|...+...|++++|..+|..+.+.-. .| -+..+.-|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444433 345566666666666665542 1223444456666666666666666666654321 11 124455555
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCC
Q 008249 231 HALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 231 ~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
....+.|+.++|...|+++++..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCC
Confidence 556666666666666666666554
No 241
>PRK11906 transcriptional regulator; Provisional
Probab=95.60 E-value=0.99 Score=44.35 Aligned_cols=80 Identities=16% Similarity=0.061 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 453 FDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI-ITYTELIKGHCARGNMKEAEEVFAK 531 (572)
Q Consensus 453 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 531 (572)
.+|.++.+...+.+.. |......+..+..-.++++.|..+|++.... .||. .+|......+.-.|+.++|.+.+++
T Consensus 321 ~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 321 QKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444322 4455445555445555555555555555553 2332 4444444455555555555555555
Q ss_pred HHHc
Q 008249 532 IQTL 535 (572)
Q Consensus 532 m~~~ 535 (572)
..+.
T Consensus 398 alrL 401 (458)
T PRK11906 398 SLQL 401 (458)
T ss_pred Hhcc
Confidence 5443
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.51 E-value=1.3 Score=44.91 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=72.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHhcCCHHH
Q 008249 449 GGSIFDAFSLKKEMLLDGIFPDVFTYNLL-IGASCNLGHIHLALQLYDEMLRRG--I-TPDIITYTELIKGHCARGNMKE 524 (572)
Q Consensus 449 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g--~-~p~~~~~~~l~~~~~~~g~~~~ 524 (572)
....+.|.++++.+... -|+...|... .+.+...|++++|++.|++..... . +.....+.-+...+...+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34567777888877764 4665555333 344556788888888888765311 0 1223445566777778888888
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHH-HHHhcCCH-------HHHHHHHHHHH
Q 008249 525 AEEVFAKIQTLGLAIDHIPFRILKK-RYRRMKES-------DKARDIHQKWL 568 (572)
Q Consensus 525 A~~~~~~m~~~g~~p~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~~l 568 (572)
|.+.|.++.+.. .-...+|..+.. ++...|+. ++|.++|+++.
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 888888888752 223334443332 34456777 77777777763
No 243
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.50 E-value=0.48 Score=37.41 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=24.3
Q ss_pred HHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 008249 163 LCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMAN 216 (572)
Q Consensus 163 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (572)
+...|+.+.|++.|.+....-| .....||.-..++--.|+.++|++=+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3444444455444444444333 2344444444444444444444444444433
No 244
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.37 E-value=5.5 Score=43.76 Aligned_cols=141 Identities=18% Similarity=0.100 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008249 369 YKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETR 448 (572)
Q Consensus 369 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 448 (572)
|.-.++..-++|.+++|..++..=.+. -...|.+..+.+...+.+++|.-.|+..-+. ...+.+|..
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~ 977 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKE 977 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHH
Confidence 334444445566666666554321111 1223444445555566777776666654321 234566777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008249 449 GGSIFDAFSLKKEMLLDGIFPDVF--TYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAE 526 (572)
Q Consensus 449 ~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 526 (572)
+|+|.+|+.+..++... -|.. +-..|+.-+...+++-+|-++..+.... | .-.+..|++...+++|.
T Consensus 978 ~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAl 1046 (1265)
T KOG1920|consen 978 CGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEAL 1046 (1265)
T ss_pred hccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHH
Confidence 78888888877766532 1222 2246667777788888888887776542 1 22344455566666666
Q ss_pred HHHHHHH
Q 008249 527 EVFAKIQ 533 (572)
Q Consensus 527 ~~~~~m~ 533 (572)
++.....
T Consensus 1047 rva~~~~ 1053 (1265)
T KOG1920|consen 1047 RVASKAK 1053 (1265)
T ss_pred HHHHhcc
Confidence 6554443
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.51 Score=43.73 Aligned_cols=153 Identities=10% Similarity=-0.026 Sum_probs=100.7
Q ss_pred HHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHH----HHHHHHHHhCCCh
Q 008249 164 CKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTH----NILVHALCKKGLL 239 (572)
Q Consensus 164 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~g~~ 239 (572)
.-.|++.+|-..++++.+..| .|..+++..=.++...|+.+.-...+++.... -.||...| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 345777777777888877665 47777777777888888888888888887643 12333222 2233344577888
Q ss_pred hHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhCCCHHHHH
Q 008249 240 GDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK---NIQTDIVAYNVLINGFCLNGDISSAF 316 (572)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~ 316 (572)
++|++.-++..+.++ .|...-.++.+.+-..|+..++.+...+-... +.-.-...|-...-.+...+.++.|+
T Consensus 192 ~dAEk~A~ralqiN~----~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 192 DDAEKQADRALQINR----FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred hhHHHHHHhhccCCC----cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 888888888888776 77777788888888888888888776654321 10011122223333455667888888
Q ss_pred HHHHHH
Q 008249 317 AYFCQM 322 (572)
Q Consensus 317 ~~~~~m 322 (572)
++|+.-
T Consensus 268 eIyD~e 273 (491)
T KOG2610|consen 268 EIYDRE 273 (491)
T ss_pred HHHHHH
Confidence 888753
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.27 E-value=0.72 Score=36.45 Aligned_cols=52 Identities=19% Similarity=0.212 Sum_probs=24.6
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 234 CKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ 289 (572)
Q Consensus 234 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 289 (572)
...|+++.|++.|.+.+..-+ .....||.-..++--.|+.++|++-+++..+
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P----~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAP----ERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HhccchHHHHHHHHHHHHhcc----cchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344445555555544444332 4444455544554445555555544444444
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.24 E-value=0.33 Score=48.48 Aligned_cols=130 Identities=15% Similarity=0.094 Sum_probs=74.3
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008249 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR 200 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 200 (572)
.+.++.-+-+.|.++.|+++-.+-. .-.....+.|+++.|.++.++. .+...|..|.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 5667777777777777776644322 2234455667777774443332 356677777777777
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHH
Q 008249 201 VNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQA 280 (572)
Q Consensus 201 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 280 (572)
.|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+.....+. +|....++.-.|+.++.
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~---------~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD---------INIAFQAALLLGDVEEC 421 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----------HHHHHHHHHHHT-HHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC---------HHHHHHHHHHcCCHHHH
Confidence 7777777777766532 44455556667777666666666655543 33444445555666666
Q ss_pred HHHHHH
Q 008249 281 LALWND 286 (572)
Q Consensus 281 ~~~~~~ 286 (572)
.+++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 248
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.24 E-value=4 Score=41.36 Aligned_cols=393 Identities=12% Similarity=0.019 Sum_probs=221.7
Q ss_pred HHHHHHHHhcCCCCCCCCcCHH-hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHH-HcCChhHHHHH
Q 008249 98 LDRLKTMRDTGPVRCTLETDYR-RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELC-KIGDLEKADHV 175 (572)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~ 175 (572)
.+.++.....+. +--|... -|-.....=.+.|..+.+.++|++..+ |++-+...|......++ ..|+.+...+.
T Consensus 61 ~~~~r~~y~~fL---~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~ 136 (577)
T KOG1258|consen 61 VDALREVYDIFL---SKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDL 136 (577)
T ss_pred HHHHHHHHHHHH---hhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 344555555543 2334444 455555555677999999999999887 46667777777666554 44778888888
Q ss_pred HHHHhhCC-CC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH---hCC------ChhHHHH
Q 008249 176 IREMSEMR-PS-PNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALC---KKG------LLGDAVK 244 (572)
Q Consensus 176 ~~~~~~~~-~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~---~~g------~~~~a~~ 244 (572)
|+.....- .. .+...|...|..-..++++.....+|++.++. | ...|+....-|. +.. ..+++.+
T Consensus 137 fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~ 212 (577)
T KOG1258|consen 137 FERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLNQNEEKILLSIDELIQ 212 (577)
T ss_pred HHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhcCChhhhcCHHHHHH
Confidence 88887632 21 34567888998888899999999999999874 2 222333322222 111 1222222
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHH-------HHHHHhCCCHHHH
Q 008249 245 FLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDI--VAYNVL-------INGFCLNGDISSA 315 (572)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l-------i~~~~~~g~~~~a 315 (572)
+-...... ......+...+-.+ ..+...+.+.+. ...+.+ -..+.......+.
T Consensus 213 l~~~~~~~----------------~~~~~~~~~~e~~~--~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~k 274 (577)
T KOG1258|consen 213 LRSDVAER----------------SKITHSQEPLEELE--IGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEK 274 (577)
T ss_pred HhhhHHhh----------------hhcccccChhHHHH--HHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 21111110 00000111111111 111111101111 111111 1122222333334
Q ss_pred HHHHHHHHHCC---C----CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 008249 316 FAYFCQMLKRG---F----LPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREF 388 (572)
Q Consensus 316 ~~~~~~m~~~g---~----~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 388 (572)
...|+.-.++- + .++..+|..-+..-.+.|+.+.+.-+|+...-. +..=...|-..+.-....|+.+-|..+
T Consensus 275 r~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~ 353 (577)
T KOG1258|consen 275 RWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNV 353 (577)
T ss_pred HHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHH
Confidence 44444443321 2 234567888888888999999999999887542 222234455555555666999999888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHh
Q 008249 389 LLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVF-TFNALILAETRGGSIFDAF---SLKKEMLL 464 (572)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~---~~~~~m~~ 464 (572)
+....+--.+..+.+--.-....-..|+++.|..+++.+.+.- |+.. .-..-+....+.|+.+.+. .++.....
T Consensus 354 ~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~ 431 (577)
T KOG1258|consen 354 LARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE 431 (577)
T ss_pred HHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc
Confidence 8877665443233222222222345689999999999998753 4432 2222334456778888877 33333333
Q ss_pred CCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008249 465 DGIFPDVFTYNLLIGA-----SCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNM 522 (572)
Q Consensus 465 ~~~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 522 (572)
... +....+.+.-- +.-.++.+.|..++.++.+. ++++...|..++..+..++..
T Consensus 432 ~~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 432 GKE--NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred ccc--CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCcc
Confidence 222 22222222222 23468999999999999987 577888899999887766633
No 249
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.23 E-value=0.15 Score=45.81 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008249 453 FDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGH 486 (572)
Q Consensus 453 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 486 (572)
+-+++++++|...|+.||..+-..|++++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 4567777777777777777777777777766654
No 250
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.21 E-value=2.2 Score=38.37 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=38.1
Q ss_pred HhCCCHHHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 008249 307 CLNGDISSAFAYFCQMLKRG--FLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLC 377 (572)
Q Consensus 307 ~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 377 (572)
.+.|++++|.+.|+.+..+- -+-...+...++.++.+.+++++|....++..+.-......-|...|.+++
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 35667777777777666541 111233444555566667777777776666665432222233444444443
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=0.78 Score=42.59 Aligned_cols=157 Identities=9% Similarity=0.006 Sum_probs=113.8
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHH
Q 008249 199 CRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (572)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (572)
-..|+..+|-..++++++. .+.|...+.-.-+++.-.|+.+.-...+++++..-....|....+-..+.-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3568888888899999875 566777888888889999999999999999887633133334555556667778899999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 008249 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR---GFLPDVITYNTLLNCLCKQGKLDEASHFYG 355 (572)
Q Consensus 279 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 355 (572)
+|.+.-++..+.+ +.|.-.-.+..+.+-..|++.++.++..+-... +--.-..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999998876 667777788888888999999998877653321 100011122233344566789999999997
Q ss_pred HH
Q 008249 356 VL 357 (572)
Q Consensus 356 ~~ 357 (572)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 53
No 252
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=5 Score=41.71 Aligned_cols=110 Identities=18% Similarity=0.203 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008249 435 NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIK 514 (572)
Q Consensus 435 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 514 (572)
..-+.+--+.-+...|+..+|.++-.+.. -||...|-.=+.+++..+++++-+++-+.+. .+.-|.....
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHH
Confidence 33445555666777899999998887765 4788899888999999999998777765543 2455778899
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 008249 515 GHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDI 563 (572)
Q Consensus 515 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 563 (572)
+|.+.|+.++|.+++-+.... .-.+.+|.+.|++.+|.++
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHH
Confidence 999999999999988765432 1456677788888777654
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.07 E-value=2.5 Score=41.86 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 476 LLIGASCNLGHIHLALQLYDEMLRRGITP--DIITYTELIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 476 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
.|..++-+.|+.++|++.+++|.+.. ++ +......|+.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44555556677777777777665431 22 234555666677777777777766666543
No 254
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.02 E-value=0.18 Score=45.37 Aligned_cols=120 Identities=16% Similarity=0.150 Sum_probs=78.2
Q ss_pred CCCcCHHhHHHHHHHHHhC-----CChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCC
Q 008249 113 TLETDYRRHVAVIRDLCLG-----GKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPN 187 (572)
Q Consensus 113 ~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 187 (572)
+-+.|-.+|-+.+..+... +.++--...+..|.+.|+.-|..+|+.|++.+-|..-.. ..+|++..
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~~F------- 132 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQKVF------- 132 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHHHH-------
Confidence 4556777777777766543 455666666777788888888888888887775532111 11222221
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCCh-hHHHHHHHHHHh
Q 008249 188 CATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLL-GDAVKFLGEVLA 251 (572)
Q Consensus 188 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 251 (572)
--|- .+-+-+++++++|...|+.||..+-..|++++.+.+-. .+..++.-.|.+
T Consensus 133 --------~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 133 --------LHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred --------hhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 1111 22356789999999999999999999999999887753 344444444443
No 255
>PRK11906 transcriptional regulator; Provisional
Probab=94.97 E-value=3 Score=41.10 Aligned_cols=146 Identities=10% Similarity=0.043 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHh---hCCCCCCHHHHHHHHHHHHh---------cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhC
Q 008249 169 LEKADHVIREMS---EMRPSPNCATYNAFITGYCR---------VNELDKALHLFSTMANNGIRPNRVTHNILVHALCKK 236 (572)
Q Consensus 169 ~~~A~~~~~~~~---~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 236 (572)
.+.|..+|.+.. +..|. ....|..+..++.. .....+|.++-++..+.+ +-|+.....+..+..-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~-~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTL-KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcc-cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 457778888887 44331 23444443333222 223456666666666654 23666666666666667
Q ss_pred CChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCCCHHHH
Q 008249 237 GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNI-QTDIVAYNVLINGFCLNGDISSA 315 (572)
Q Consensus 237 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a 315 (572)
++++.|...|++....++ ....+|....-...-.|+.++|.+.+++..+... +.-.......++.|+.. ..++|
T Consensus 352 ~~~~~a~~~f~rA~~L~P----n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIHST----DIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhcCC----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhh
Confidence 777777777777777665 4455555555555667777777777777655421 11112222233344433 34555
Q ss_pred HHHHHH
Q 008249 316 FAYFCQ 321 (572)
Q Consensus 316 ~~~~~~ 321 (572)
+++|-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 555543
No 256
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.93 E-value=0.82 Score=45.73 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=26.8
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 365 DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (572)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 429 (572)
+...|..|.+...+.|+++-|.+.|.+... +..|+-.|.-.|+.+...++.+....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555555555555555555544432 44444445555555554444444443
No 257
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.76 E-value=2 Score=35.39 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=19.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008249 371 TIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR 413 (572)
Q Consensus 371 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 413 (572)
.++..+...+.......+++.+...+. .++...+.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444445555555555444432 244444444444443
No 258
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.73 E-value=3.4 Score=40.96 Aligned_cols=58 Identities=16% Similarity=0.084 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 441 ALILAETRGGSIFDAFSLKKEMLLDGIFP-DVFTYNLLIGASCNLGHIHLALQLYDEML 498 (572)
Q Consensus 441 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (572)
.+..++.+.|+.++|.+.+++|.+..... +......|+.++...+.+.++..++.+..
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34444555566666666666665432111 22344456666666666666666665554
No 259
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.71 E-value=1.7 Score=34.52 Aligned_cols=62 Identities=27% Similarity=0.305 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008249 335 NTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLEKSV 397 (572)
Q Consensus 335 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 397 (572)
...++.+...|+-+.-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.+.-++|.
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33445555566666666666555542 244555555566666666666666666666655554
No 260
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.60 E-value=1.8 Score=34.37 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=32.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008249 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN 291 (572)
Q Consensus 226 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 291 (572)
....+..+...|+-++-.+++.++.+.+. +++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~----~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEE----INPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH---------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccC----CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444555566666666666666654332 555555566666666666666666666666555
No 261
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.60 E-value=1.5 Score=35.65 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=23.7
Q ss_pred HhcCCHhHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 008249 199 CRVNELDKALHLFSTMANNGI--RPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
.+.|++++|.+.|+.+...-. +-.......++.+|.+.+++++|...+++.++..|
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 344445555554444443310 00122233344444444444444444444444444
No 262
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.59 E-value=1.2 Score=41.80 Aligned_cols=230 Identities=11% Similarity=0.048 Sum_probs=112.6
Q ss_pred HHhCCCHHHHHHHHHHHHHC--CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC---HhhHHHHHHHHHH
Q 008249 306 FCLNGDISSAFAYFCQMLKR--GFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKT--GVAPD---QISYKTIIQGLCI 378 (572)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~li~~~~~ 378 (572)
+....+.++|+..+.+...+ ....--.+|..+..+.++.|.+++++..--..+.. ..... ...|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888877766543 11112345666667777777777665433211110 00111 1233344444444
Q ss_pred cCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhc
Q 008249 379 HGDIVKAREFLLSMLEK-SVVP---EPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGV-----SSNVFTFNALILAETRG 449 (572)
Q Consensus 379 ~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~ll~~~~~~ 449 (572)
.-++.+++.+-..-... |..| .-....++..++...+.++++.+.|+...+... ......+..|-..|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44455555444433332 1111 112233455666666677777777766654211 11234566666667777
Q ss_pred CCHHHHHHHHHHHHhC----CCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHH
Q 008249 450 GSIFDAFSLKKEMLLD----GIFPDVFTYN-----LLIGASCNLGHIHLALQLYDEMLR----RGITPD-IITYTELIKG 515 (572)
Q Consensus 450 g~~~~a~~~~~~m~~~----~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~ 515 (572)
.++++|.-+..+..+. ++.--..-|. .+.-++-..|++..|.+.-++..+ .|-.+. ......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 7777776665554431 2111011121 222334455666666666655543 231211 1223445566
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 008249 516 HCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 516 ~~~~g~~~~A~~~~~~m~~~ 535 (572)
|...|+.+.|..-|+.+...
T Consensus 256 yR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHhcccHhHHHHHHHHHHHH
Confidence 66666766666666665543
No 263
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.30 E-value=3.7 Score=36.60 Aligned_cols=19 Identities=16% Similarity=0.088 Sum_probs=8.3
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 008249 513 IKGHCARGNMKEAEEVFAK 531 (572)
Q Consensus 513 ~~~~~~~g~~~~A~~~~~~ 531 (572)
|-.+....++..|.+.++.
T Consensus 197 ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 197 ILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHhhHHHHHHHHHHhcc
Confidence 3333344444444444444
No 264
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.30 E-value=0.16 Score=31.92 Aligned_cols=29 Identities=28% Similarity=0.249 Sum_probs=14.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 008249 226 HNILVHALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 226 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
+..+...|...|++++|.++|+++++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 34444445555555555555555555443
No 265
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.30 E-value=10 Score=41.78 Aligned_cols=149 Identities=13% Similarity=-0.009 Sum_probs=86.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHhcCCHHHH
Q 008249 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALI----LAETRGGSIFDA 455 (572)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll----~~~~~~g~~~~a 455 (572)
++++.|+..+.++. ...|.-.++.--+.|-+.+|..++. |+...+.... ..+...+.+++|
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~A 958 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEA 958 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHH
Confidence 45555555555443 1223444444456677777766643 5555554444 444455667777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 456 FSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI--ITYTELIKGHCARGNMKEAEEVFAKIQ 533 (572)
Q Consensus 456 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 533 (572)
.-.|+..-+ ..-.+.+|..+|++.+|+.+..++.. .-+. .+-..|+.-+..+++.-+|-+++.+..
T Consensus 959 al~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 959 ALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 666654322 12346677888999999988887753 1222 223567778888888888888887766
Q ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 008249 534 TLGLAIDHIPFRILKKRYRRMKESDKARDI 563 (572)
Q Consensus 534 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 563 (572)
.. ..-.+..|++...|++|.++
T Consensus 1027 sd--------~~~av~ll~ka~~~~eAlrv 1048 (1265)
T KOG1920|consen 1027 SD--------PEEAVALLCKAKEWEEALRV 1048 (1265)
T ss_pred cC--------HHHHHHHHhhHhHHHHHHHH
Confidence 53 12233344555555555544
No 266
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=8.8 Score=40.61 Aligned_cols=148 Identities=12% Similarity=0.068 Sum_probs=94.9
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYC 199 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 199 (572)
..-...+-+.+.|++++|...|-+-+.. +.|. .++.-|....+..+--..++.+.+.|. .+...-..|+.+|.
T Consensus 370 i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYi 442 (933)
T KOG2114|consen 370 IHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYI 442 (933)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHH
Confidence 3444556677889999999888776543 1222 244455555566666777788888877 46666678999999
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHH
Q 008249 200 RVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQ 279 (572)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 279 (572)
+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.++|.-+-..... ....... .+-..|++++
T Consensus 443 Klkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~--------he~vl~i---lle~~~ny~e 508 (933)
T KOG2114|consen 443 KLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK--------HEWVLDI---LLEDLHNYEE 508 (933)
T ss_pred HhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc--------CHHHHHH---HHHHhcCHHH
Confidence 9999988777766554 2311 11134456666777777777766554422 2223333 3345688889
Q ss_pred HHHHHHHHH
Q 008249 280 ALALWNDMF 288 (572)
Q Consensus 280 A~~~~~~~~ 288 (572)
|++.+..+.
T Consensus 509 Al~yi~slp 517 (933)
T KOG2114|consen 509 ALRYISSLP 517 (933)
T ss_pred HHHHHhcCC
Confidence 988887764
No 267
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.20 E-value=0.11 Score=31.03 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 543 PFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
+|..|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678888888888888888888854
No 268
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.04 E-value=7 Score=38.78 Aligned_cols=79 Identities=11% Similarity=0.027 Sum_probs=54.4
Q ss_pred CCcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHH-HcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 008249 114 LETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELC-KIGDLEKADHVIREMSEMRPSPNCATYN 192 (572)
Q Consensus 114 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 192 (572)
++.|+..|...+.-+-+.+.+.+.-.+|..|.... +.++..|-.-..-.. ...+++.|..+|.+-.+..|. ++..|.
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd-sp~Lw~ 178 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD-SPKLWK 178 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC-ChHHHH
Confidence 34588899999987777777999999999999863 334555544443333 334589999999988887663 444444
Q ss_pred HH
Q 008249 193 AF 194 (572)
Q Consensus 193 ~l 194 (572)
..
T Consensus 179 ey 180 (568)
T KOG2396|consen 179 EY 180 (568)
T ss_pred HH
Confidence 33
No 269
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.86 E-value=3.4 Score=34.64 Aligned_cols=123 Identities=20% Similarity=0.162 Sum_probs=52.2
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHH-H--HHHHHHHHHhc
Q 008249 199 CRVNELDKALHLFSTMANNGIRPNRV-THNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVI-T--STILMDSYFKN 274 (572)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~--~~~l~~~~~~~ 274 (572)
.+.|..++|+.-|..+.+.|...-+. ............|+...|...|+++-...+ . |.+. - --.-.-.+...
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~--P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-I--PQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-C--cchhhHHHHHHHHHHHhcc
Confidence 34555666666666666555432111 111222334455666666666665554332 1 1111 0 00111123344
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 008249 275 GDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLK 324 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 324 (572)
|.+++.....+.+...+-+.-...-..|.-+-.+.|++.+|.++|..+..
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 44444444444443333222223333344444444555555555544443
No 270
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.70 E-value=0.23 Score=31.19 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=11.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCC
Q 008249 157 NYLVNELCKIGDLEKADHVIREMSEMR 183 (572)
Q Consensus 157 ~~li~~~~~~g~~~~A~~~~~~~~~~~ 183 (572)
..+...|...|++++|+++|+++.+..
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 333444444444444444444444433
No 271
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.65 E-value=0.8 Score=42.17 Aligned_cols=78 Identities=14% Similarity=0.230 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH-----CCCCCCHhHHHH
Q 008249 154 LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMAN-----NGIRPNRVTHNI 228 (572)
Q Consensus 154 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 228 (572)
.++..++..+...|+++.+.+.++++....| -+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3456677778888999999999999988877 5788899999999999999999999988865 578887777665
Q ss_pred HHHH
Q 008249 229 LVHA 232 (572)
Q Consensus 229 ll~~ 232 (572)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5554
No 272
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.60 E-value=6.4 Score=36.92 Aligned_cols=62 Identities=11% Similarity=0.052 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCChh---HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 225 THNILVHALCKKGLLG---DAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 225 ~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
++..++.++...+..+ +|.++++.+....+ ..+.++-.-+..+.+.++.+++.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~----~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYG----NKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC----CCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3445555555555433 34445445544332 22334444445555566666666666666654
No 273
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.56 E-value=1.2 Score=38.34 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CChHHHHH
Q 008249 472 FTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI--ITYTELIKGHCARGNMKEAEEVFAKIQTLGLA---IDHIPFRI 546 (572)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ 546 (572)
..+..+.+.|++.|+.++|.+.|.++.+....+.. ..+..+++.....|++..+...+.++...--. ++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45566777777777777777777777765433332 45566777777777777777777766543111 11111111
Q ss_pred HHH--HHHhcCCHHHHHHHHHHH
Q 008249 547 LKK--RYRRMKESDKARDIHQKW 567 (572)
Q Consensus 547 l~~--~~~~~g~~~~A~~~~~~~ 567 (572)
... .+...|++.+|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 111 233566777777666543
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.55 E-value=6.5 Score=36.86 Aligned_cols=163 Identities=12% Similarity=0.043 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008249 403 IWNVIIDGYGRCGDLS---NAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIG 479 (572)
Q Consensus 403 ~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 479 (572)
++..++.+|...+..+ +|..+++.+...... ....+..-+..+.+.++.+++.+.+.+|...-.. ....+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHH
Confidence 4566777777766654 455555555443222 2444445556666678888888888888875211 2233333333
Q ss_pred HH---HhcCCHHHHHHHHHHHHHCCCCCCHH-HHH-HHHH---HHHhcCC------HHHHHHHHHHHHHc-CCCCChHH-
Q 008249 480 AS---CNLGHIHLALQLYDEMLRRGITPDII-TYT-ELIK---GHCARGN------MKEAEEVFAKIQTL-GLAIDHIP- 543 (572)
Q Consensus 480 ~~---~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~-~l~~---~~~~~g~------~~~A~~~~~~m~~~-g~~p~~~~- 543 (572)
.+ .. .....|...++.+....+.|... ... .++. .....++ .+...++++...+. +.+.+..+
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 33 33 33455666666665443444443 111 1111 1112111 44444555543332 22233332
Q ss_pred --HHHHH----HHHHhcCCHHHHHHHHHHHH
Q 008249 544 --FRILK----KRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 544 --~~~l~----~~~~~~g~~~~A~~~~~~~l 568 (572)
..+++ ..+.+.+++++|.++|+-.+
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22222 34667899999999998554
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.52 E-value=0.97 Score=41.63 Aligned_cols=76 Identities=13% Similarity=0.186 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChHHHHHHH
Q 008249 474 YNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT-----LGLAIDHIPFRILK 548 (572)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l~ 548 (572)
+..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3444455555555555555555555442 33445555555555555555555555555443 35555555444443
Q ss_pred HH
Q 008249 549 KR 550 (572)
Q Consensus 549 ~~ 550 (572)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 33
No 276
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.45 E-value=0.22 Score=29.02 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008249 543 PFRILKKRYRRMKESDKARDIHQKWLLRNK 572 (572)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 572 (572)
+|..++..|...|++++|+..|+++++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 466667777777777777777777766553
No 277
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.41 E-value=6.8 Score=37.09 Aligned_cols=229 Identities=12% Similarity=0.123 Sum_probs=144.7
Q ss_pred HHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCC---HhHHHHHHHHHHH
Q 008249 271 YFKNGDKFQALALWNDMFQK--NIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR--GFLPD---VITYNTLLNCLCK 343 (572)
Q Consensus 271 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~~~~~ll~~~~~ 343 (572)
+....+.++|+..|.+-..+ +...-..+|..+..+.++.|.+++++..--.-+.. ..... ...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999887764 11223456777788888888888876653322221 11111 1234445555555
Q ss_pred cCCHHHHHHHHHHHHhC-CCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhc
Q 008249 344 QGKLDEASHFYGVLSKT-GVAPD---QISYKTIIQGLCIHGDIVKAREFLLSMLEKS-----VVPEPHIWNVIIDGYGRC 414 (572)
Q Consensus 344 ~g~~~~A~~~~~~~~~~-~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~ 414 (572)
.-++.+++.+-..-... |..|. -...-++..++...+.++++++.|+...+-. .......+..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555665555443332 22231 1334456667777888999999999887532 222345788999999999
Q ss_pred CCHHHHHHHHHHHHh----CCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHH
Q 008249 415 GDLSNAFSIRDLMLS----FGVSSNVFTFN-----ALILAETRGGSIFDAFSLKKEMLL----DGIFPD-VFTYNLLIGA 480 (572)
Q Consensus 415 g~~~~A~~~~~~~~~----~~~~p~~~~~~-----~ll~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~ 480 (572)
.++++|.-...+..+ .++.--..-|. .+..++...|...+|.+.-++..+ .|-.|. ......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999999877665533 34332222233 334567788988888888877654 342222 3345567888
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 008249 481 SCNLGHIHLALQLYDEMLR 499 (572)
Q Consensus 481 ~~~~g~~~~A~~~~~~m~~ 499 (572)
|-..|+.+.|..-|+....
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 8899999999888887653
No 278
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.32 E-value=13 Score=39.53 Aligned_cols=191 Identities=18% Similarity=0.118 Sum_probs=96.5
Q ss_pred HcCCHHHHHHHHHHHHhCCC-CCC-------HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHHH
Q 008249 378 IHGDIVKAREFLLSMLEKSV-VPE-------PHIWNVIIDGYGRCGDLSNAFSIRD--------LMLSFGVSSNVFTFNA 441 (572)
Q Consensus 378 ~~g~~~~A~~~~~~~~~~~~-~~~-------~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~ 441 (572)
-.+++..|...+..+.+... .|+ +..+....-.+-..|+.+.|...|. .....+...+..++..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 47889999999998886421 111 2222222233345799999999997 4445555544444433
Q ss_pred H--HHHH--HhcCCHHH--HHHHHHHHHhC-CCCC--CHHHHHHH-HHHHHhcC--CHHHHHHHHHHHHHC---CCCCCH
Q 008249 442 L--ILAE--TRGGSIFD--AFSLKKEMLLD-GIFP--DVFTYNLL-IGASCNLG--HIHLALQLYDEMLRR---GITPDI 506 (572)
Q Consensus 442 l--l~~~--~~~g~~~~--a~~~~~~m~~~-~~~p--~~~~~~~l-i~~~~~~g--~~~~A~~~~~~m~~~---g~~p~~ 506 (572)
+ +..+ ......++ +.++++.+... .-.| +..++..+ +.++.... ...++...+.+..+. ....+.
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 2 1112 22222333 66666655532 1122 33333333 33333221 122444444333221 111121
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC--ChHHHH-----HHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 507 ---ITYTELIKGHCARGNMKEAEEVFAKIQTLGL-AI--DHIPFR-----ILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 507 ---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p--~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
.+++.+..-+. .|+..+..+.......... .| ....|. .+.+.+...|+.++|.+..++.-.
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 22333333333 7888877666665443211 12 333452 344558889999999999887654
No 279
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.23 E-value=7.6 Score=36.65 Aligned_cols=132 Identities=11% Similarity=0.154 Sum_probs=70.6
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh--CC----ChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCC-
Q 008249 204 LDKALHLFSTMANNGIRPNRVTHNILVHALCK--KG----LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGD- 276 (572)
Q Consensus 204 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 276 (572)
+++...+++.|.+.|+.-+..+|....-.... .. ....|..+++.|.+..+.-..++-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667788888888888777666553333222 12 345677888888877654444555555555443 2222
Q ss_pred ---HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhC-C--CHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 008249 277 ---KFQALALWNDMFQKNIQTDIV-AYNVLINGFCLN-G--DISSAFAYFCQMLKRGFLPDVITYNTL 337 (572)
Q Consensus 277 ---~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~-g--~~~~a~~~~~~m~~~g~~p~~~~~~~l 337 (572)
.+.+..+|+.+.+.|...+-. -+.+-+-++... . ....+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 245555666666655443322 111111122111 1 133566666666666666655555443
No 280
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.17 E-value=4.6 Score=33.95 Aligned_cols=136 Identities=17% Similarity=0.128 Sum_probs=88.3
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHH-HHH-
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPD-VLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCAT-YNA- 193 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~- 193 (572)
+...|..-++ +.+.+..++|+.-|..+.+.|...= +.............|+...|...|+++-...+.|-+.- ...
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3445655555 6777888999999999888765422 22233344556778888888888988877655554431 111
Q ss_pred -HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 008249 194 -FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADD 253 (572)
Q Consensus 194 -li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 253 (572)
-.-.+...|.+++.....+-+...+-+.....-..|.-+-.+.|++.+|.+.|..+....
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 122345678888887777777655433334444556666678888888888888877643
No 281
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.14 E-value=0.26 Score=28.62 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008249 543 PFRILKKRYRRMKESDKARDIHQKWLLRNK 572 (572)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 572 (572)
.|..+...+...|++++|++.|++.++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 455666777777777777777777766543
No 282
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.97 E-value=1.5 Score=40.42 Aligned_cols=106 Identities=20% Similarity=0.264 Sum_probs=76.1
Q ss_pred CCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH
Q 008249 147 KGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRP---SPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNR 223 (572)
Q Consensus 147 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 223 (572)
.|.+....+...++..-....+++++...+-+++...- .|+.. -.+.++.+ -.-++++++.++..=.+.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccch
Confidence 45555666667777777777888888888877765211 11111 11223333 334677999999888899999999
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 008249 224 VTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 224 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
++++.+++.+.+.+++.+|.++...++....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888876543
No 283
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.81 E-value=8.8 Score=36.23 Aligned_cols=132 Identities=12% Similarity=0.049 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCC-
Q 008249 382 IVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR--C----GDLSNAFSIRDLMLSFGV---SSNVFTFNALILAETRGGS- 451 (572)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~~~~~~~---~p~~~~~~~ll~~~~~~g~- 451 (572)
+++.+.+++.+.+.|..-+..+|-+....... . ....+|..+|+.|.+..+ .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34456677777777776665555443222222 1 134567777888877533 3445555555543 2233
Q ss_pred ---HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008249 452 ---IFDAFSLKKEMLLDGIFPDVF-TYNLLIGASCNL-G--HIHLALQLYDEMLRRGITPDIITYTELIKG 515 (572)
Q Consensus 452 ---~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~-g--~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 515 (572)
.+.++.+|+.+.+.|...+.. -+.+-+-+++.. . ....+.++++.+.+.|+++....|..++-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 245566677777766654422 222222222221 1 144677777777777777776666555443
No 284
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.71 E-value=11 Score=40.05 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=30.2
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008249 152 DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRV 201 (572)
Q Consensus 152 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 201 (572)
+......+|-.+.++|.+++|.++..+..... ......+...+..|...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~-~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQF-QKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS--TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHhC
Confidence 44556677778888888888888775544322 23344566666676654
No 285
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.50 E-value=7.4 Score=34.62 Aligned_cols=222 Identities=17% Similarity=0.077 Sum_probs=106.8
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 008249 275 GDKFQALALWNDMFQKNIQ-TDIVAYNVLINGFCLNGDISSAFAYFCQMLKR-GFLPDVITYNTLLNCLCKQGKLDEASH 352 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~A~~ 352 (572)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444454555444443211 02345555555556666666666665555432 122334444455555555555666666
Q ss_pred HHHHHHhCCCCCCHhhHHHHHH-HHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 353 FYGVLSKTGVAPDQISYKTIIQ-GLCIHGDIVKAREFLLSMLEKSV--VPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (572)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 429 (572)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666555532222 111122222 45566666666666666544211 11222333333334455666666666666555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 430 FGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD-VFTYNLLIGASCNLGHIHLALQLYDEMLR 499 (572)
Q Consensus 430 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (572)
.........+..+...+...++++.+...+...... .|+ ...+..+...+...+..+.+...+.+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 322112445555555555666666666666665553 222 22333333333344556666666665554
No 286
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.20 E-value=7.5 Score=34.05 Aligned_cols=65 Identities=20% Similarity=0.136 Sum_probs=44.3
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 008249 152 DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANN 217 (572)
Q Consensus 152 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 217 (572)
-+.+||.|.--+...|+++.|.+.|+...+.+|.-+-...|.-|.. ---|++.-|.+-|...-+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHHhc
Confidence 3567888888888888888888888888887765443333333322 2467888887777666554
No 287
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.18 E-value=3.6 Score=35.46 Aligned_cols=97 Identities=19% Similarity=0.058 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHhHHHH
Q 008249 262 ITSTILMDSYFKNGDKFQALALWNDMFQKNIQTD--IVAYNVLINGFCLNGDISSAFAYFCQMLKR---GFLPDVITYNT 336 (572)
Q Consensus 262 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~ 336 (572)
..+..+...|++.|+.++|++.|.++.+....+. ...+-.+|+.....+++..+...+.+.... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566777778888888888888887776532222 344556677777777877777777665543 11111111111
Q ss_pred HHH--HHHHcCCHHHHHHHHHHHH
Q 008249 337 LLN--CLCKQGKLDEASHFYGVLS 358 (572)
Q Consensus 337 ll~--~~~~~g~~~~A~~~~~~~~ 358 (572)
... .+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 1234566777666665443
No 288
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.06 E-value=0.2 Score=29.41 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=19.2
Q ss_pred HHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 008249 246 LGEVLADDDGKATSDVITSTILMDSYFKNGDKFQAL 281 (572)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 281 (572)
|++.++..| .+..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P----~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNP----NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCC----CCHHHHHHHHHHHHHCcCHHhhc
Confidence 344445444 56666666666666666666664
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.87 E-value=6.7 Score=32.73 Aligned_cols=53 Identities=17% Similarity=0.023 Sum_probs=27.9
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 234 CKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 234 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
.+.++.+++..++..+.-..|.. +...++.. ..+...|++.+|+.+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~--~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEF--PELDLFDG--WLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCc--hHHHHHHH--HHHHHhCCHHHHHHHHHHHhcc
Confidence 34556666666666665544422 33333332 2345566666666666665544
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.87 E-value=0.42 Score=28.43 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 508 TYTELIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 508 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
+|..|...|.+.|++++|++++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888553
No 291
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.81 E-value=19 Score=37.73 Aligned_cols=245 Identities=16% Similarity=0.097 Sum_probs=131.8
Q ss_pred hhHHHHHHHHHHhCCCCCCCccHHHHHHHH--HH-HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHh
Q 008249 239 LGDAVKFLGEVLADDDGKATSDVITSTILM--DS-YFKNGDKFQALALWNDMFQ-------KNIQTDIVAYNVLINGFCL 308 (572)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~ 308 (572)
...+.++++...+.+. ........++ .+ +....+.+.|+..|+.+.+ .| .+....-+...|.+
T Consensus 228 ~~~a~~~~~~~a~~g~----~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH----SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhcc----hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 4577888888777654 2222222222 22 3456788888888888876 44 33455666666666
Q ss_pred CC-----CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH----H
Q 008249 309 NG-----DISSAFAYFCQMLKRGFLPDVITYNTLLNCLCK-QGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLC----I 378 (572)
Q Consensus 309 ~g-----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~ 378 (572)
.. +.+.|+.++.+..+.|. |+.......+..... ..+...|.++|....+.|.. ..+..+..+|. -
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCc
Confidence 43 56778888888887764 344333322222222 24567888888888887742 22222222222 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hh----cC
Q 008249 379 HGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAE----TR----GG 450 (572)
Q Consensus 379 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~----~~----~g 450 (572)
..+...|..++.+.-+.| .|....-...+..+.. ++++.+...+..+.+.|.. ...+-...+..- .. ..
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhcccccccccccc
Confidence 346788888888888887 2232222233333444 7777777776666665543 222222222110 00 12
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHC
Q 008249 451 SIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNL----GHIHLALQLYDEMLRR 500 (572)
Q Consensus 451 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~ 500 (572)
+.+.+..++......| +......|.+.|... .+++.|...+......
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~ 504 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ 504 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh
Confidence 3445555555555443 334444444443322 2456666666665554
No 292
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.67 E-value=14 Score=35.99 Aligned_cols=66 Identities=14% Similarity=0.010 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 434 SNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFP---DVFTYNLLIGASCNLGHIHLALQLYDEMLR 499 (572)
Q Consensus 434 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (572)
....+|..+...+.+.|.++.|...+..+...+..+ ++...-.-.+.+-..|+..+|+..+++...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677888888888899998888888887643211 233333445666677888888888888776
No 293
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.46 E-value=2.9 Score=35.99 Aligned_cols=90 Identities=16% Similarity=0.017 Sum_probs=58.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008249 444 LAETRGGSIFDAFSLKKEMLLDGIFPD-----VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCA 518 (572)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 518 (572)
.-+.+.|++++|..-|.+.++. +.+. ...|..-..++.+.+.++.|+.-....++.+ +........-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 4466778888888888877765 2221 3344445556677778888877777777653 2223344444556777
Q ss_pred cCCHHHHHHHHHHHHHc
Q 008249 519 RGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 519 ~g~~~~A~~~~~~m~~~ 535 (572)
...+++|++=|+++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 77788888888887775
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.90 E-value=8.5 Score=32.12 Aligned_cols=50 Identities=22% Similarity=0.039 Sum_probs=24.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 448 RGGSIFDAFSLKKEMLLDGIFPDVFTY-NLLIGASCNLGHIHLALQLYDEMLR 499 (572)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~ 499 (572)
+.++.+++..++..+.-. .|..... ..-...+...|++.+|.++|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 445556666666555542 3332221 1122334455666666666666544
No 295
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.63 E-value=24 Score=36.90 Aligned_cols=180 Identities=17% Similarity=0.155 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHHHH--H-HHhcCCHhHHHHHHHHHHH-------CCCCCCHhHHHHHHHHHHhCC-
Q 008249 169 LEKADHVIREMSEMRPSPNCATYNAFIT--G-YCRVNELDKALHLFSTMAN-------NGIRPNRVTHNILVHALCKKG- 237 (572)
Q Consensus 169 ~~~A~~~~~~~~~~~~~~~~~~~~~li~--~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~g- 237 (572)
...|.+.++...+.|- .........+. + +....+.+.|+..|+.+.. .| .+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 3567777777766553 11111111221 2 3355678888888888766 44 3334555666665533
Q ss_pred ----ChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----h
Q 008249 238 ----LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFK-NGDKFQALALWNDMFQKNIQTDIVAYNVLINGFC----L 308 (572)
Q Consensus 238 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~ 308 (572)
+.+.|..++....+.+. ++....-..+..... ..+...|.+.|....+.|. +..+-.+..+|. .
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~----~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN----PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGV 376 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC----chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCc
Confidence 55668888887777665 554443333332222 2356778888877777762 222222222221 1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008249 309 NGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTG 361 (572)
Q Consensus 309 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 361 (572)
..+.+.|..++.+..+.| .|....-...+..+.. +.++.+.-.+..+...|
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 236677777777777776 2222222222233333 55666655555555544
No 296
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.51 E-value=9.9 Score=33.08 Aligned_cols=75 Identities=16% Similarity=0.038 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHH
Q 008249 205 DKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQA 280 (572)
Q Consensus 205 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 280 (572)
++|.+.|-.+...+.--++.....|...|. ..+.+++.+++..+++........|+..+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 556666666665554434444444444433 556666777666666544322235666666666666666666655
No 297
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.44 E-value=9.9 Score=32.14 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=8.9
Q ss_pred CCCCCChhhHHHHHHHHHHcCC
Q 008249 147 KGTVPDVLTHNYLVNELCKIGD 168 (572)
Q Consensus 147 ~g~~~~~~~~~~li~~~~~~g~ 168 (572)
.+++|+...+..+++.+.+.|+
T Consensus 23 ~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 23 HNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred cCCCCCHHHHHHHHHHHHHcCC
Confidence 3333444444444444444443
No 298
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.20 E-value=0.67 Score=26.87 Aligned_cols=29 Identities=24% Similarity=0.309 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 543 PFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
+|..+...|...|++++|.+.|++.++.+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45566677777777777777777776544
No 299
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.20 E-value=13 Score=33.24 Aligned_cols=205 Identities=14% Similarity=0.015 Sum_probs=93.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008249 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLING 305 (572)
Q Consensus 226 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 305 (572)
|..-..+|....++++|...+.+..+-.. .+...| -....++.|.-+.+++.+. +--+..|+.-...
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yE----nnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYE----NNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHH----hcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 44445566667777777776666653221 111111 1122234444444444432 1223344555556
Q ss_pred HHhCCCHHHHHHHHHHHHHC--CCCCCH--hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 008249 306 FCLNGDISSAFAYFCQMLKR--GFLPDV--ITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHGD 381 (572)
Q Consensus 306 ~~~~g~~~~a~~~~~~m~~~--g~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 381 (572)
|...|.++.|-..+++.-+. ++.|+. ..|..-+...-..++...|.++ +...-..+.+..+
T Consensus 101 Y~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGKCSRVLVRLEK 165 (308)
T ss_pred HHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHHhhhHhhhhHH
Confidence 66666666555555443321 223321 1122222222222222222222 2333344555555
Q ss_pred HHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHH
Q 008249 382 IVKAREFLLSMLEK----SVVPEP-HIWNVIIDGYGRCGDLSNAFSIRDLMLSFG---VSSNVFTFNALILAETRGGSIF 453 (572)
Q Consensus 382 ~~~A~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~ 453 (572)
+++|-..+.+-... ...++. ..|...|-.+.-..++..|...++.-.+.+ -+-+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 55554444332211 111111 224455556666677888888777643321 123556677777766 346666
Q ss_pred HHHHHH
Q 008249 454 DAFSLK 459 (572)
Q Consensus 454 ~a~~~~ 459 (572)
++.+++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 655443
No 300
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.17 E-value=7 Score=39.67 Aligned_cols=98 Identities=16% Similarity=0.081 Sum_probs=51.2
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH
Q 008249 234 CKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDIS 313 (572)
Q Consensus 234 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 313 (572)
.+.|+++.|.++..+. .+..-|..|.+.....|++..|.+.|....+ |..|+-.+...|+-+
T Consensus 648 l~lgrl~iA~~la~e~---------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA---------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAE 709 (794)
T ss_pred hhcCcHHHHHHHHHhh---------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChh
Confidence 4556666666655443 4455566666666666666666666655442 334444555555555
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 008249 314 SAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYG 355 (572)
Q Consensus 314 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 355 (572)
....+-....+.|.. |.-.-+|...|+++++.+++.
T Consensus 710 ~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 710 GLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 444444444444321 222234445566666555543
No 301
>PRK09687 putative lyase; Provisional
Probab=90.09 E-value=17 Score=34.15 Aligned_cols=219 Identities=14% Similarity=0.108 Sum_probs=110.6
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCh----hHHHHHHHHHhhCCCCCCHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDL----EKADHVIREMSEMRPSPNCAT 190 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~ 190 (572)
.+|.......+.++...|. ..+...+..+... +++..-...+.+++..|.. +++...+..+.... ++...
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D--~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED--KSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--CCHHH
Confidence 3566666677777777775 3444444445443 4666666677777777763 45666666664433 34444
Q ss_pred HHHHHHHHHhcCCH-----hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHH
Q 008249 191 YNAFITGYCRVNEL-----DKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITST 265 (572)
Q Consensus 191 ~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 265 (572)
-...+.++...+.. ..+.+.+..... .++..+-...+.++.+.++ +++...+-.+++.. +..+-.
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d~------~~~VR~ 177 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKDP------NGDVRN 177 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcCC------CHHHHH
Confidence 44555555544321 223333333332 2355555556666666665 45556665555532 222333
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 008249 266 ILMDSYFKNG-DKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQ 344 (572)
Q Consensus 266 ~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 344 (572)
..+.++.+.+ +.+.+...+..+.. .++..+-...+.++.+.|+. .|+..+-...+.+ + .....+.++...
T Consensus 178 ~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~i 248 (280)
T PRK09687 178 WAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGEL 248 (280)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhc
Confidence 3333333332 13345555554443 34555555666666666653 4444444444432 1 122444555555
Q ss_pred CCHHHHHHHHHHHHh
Q 008249 345 GKLDEASHFYGVLSK 359 (572)
Q Consensus 345 g~~~~A~~~~~~~~~ 359 (572)
|+. +|...+..+.+
T Consensus 249 g~~-~a~p~L~~l~~ 262 (280)
T PRK09687 249 GDK-TLLPVLDTLLY 262 (280)
T ss_pred CCH-hHHHHHHHHHh
Confidence 553 45555555444
No 302
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.72 E-value=12 Score=32.20 Aligned_cols=129 Identities=13% Similarity=0.055 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH---
Q 008249 401 PHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFN--ALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYN--- 475 (572)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--- 475 (572)
...|..++.... .+.. +.....+.+.........-++. .+...+...|++++|..-++..... |....+.
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence 444555555543 2333 4444444444432111111222 2234566677777777777766643 2222222
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008249 476 --LLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG 536 (572)
Q Consensus 476 --~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 536 (572)
.|.+.....|.+++|+..++...+.+. .......-.+.+...|+-++|+.-|++....+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 234445567777777777766554321 22233444566777777777777777777664
No 303
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.63 E-value=23 Score=35.08 Aligned_cols=126 Identities=15% Similarity=0.133 Sum_probs=82.7
Q ss_pred HHHHHhCCChhhHHH-HHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 008249 125 IRDLCLGGKIGTALW-LRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNE 203 (572)
Q Consensus 125 i~~~~~~g~~~~A~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 203 (572)
|.--...|+...|.+ +|+.+....-.|+... .....+...|.++.+...+......- .....+...+++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~-~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKII-GTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhh-cCCchHHHHHHHhhhchhh
Confidence 444455677777764 5555554433344333 33344566789999988877664432 2345677788888889999
Q ss_pred HhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 008249 204 LDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDD 254 (572)
Q Consensus 204 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 254 (572)
+++|..+-+-|....++ ++.......-..-..|-++++.-.++++....+
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 99999999999887666 444444443344456778888888888876554
No 304
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.46 E-value=0.49 Score=27.71 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhcCCHHHH
Q 008249 542 IPFRILKKRYRRMKESDKA 560 (572)
Q Consensus 542 ~~~~~l~~~~~~~g~~~~A 560 (572)
..|..+...|...|++++|
T Consensus 14 ~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 14 EAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHCcCHHhh
Confidence 3444444444444444444
No 305
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.22 E-value=13 Score=31.55 Aligned_cols=47 Identities=11% Similarity=0.176 Sum_probs=23.0
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHH
Q 008249 177 REMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHN 227 (572)
Q Consensus 177 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 227 (572)
+.+.+.+..|+...|..++..+.+.|++..- ..+...++-+|.....
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA 64 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLA 64 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHH
Confidence 3334445555555666666666666654333 2333334444444433
No 306
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.01 E-value=6.7 Score=36.40 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=52.5
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008249 364 PDQISYKTIIQGLCIHGDIVKAREFLLSMLEKS---VVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFN 440 (572)
Q Consensus 364 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 440 (572)
....+...++..-....+++.++..+-++.... ..|+.. -.+.++.+ -.-+.++++.++..=+..|+-||..+++
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchhhHH
Confidence 334444444444444556666666666665431 111111 11122222 2235556666666666666666777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 441 ALILAETRGGSIFDAFSLKKEMLL 464 (572)
Q Consensus 441 ~ll~~~~~~g~~~~a~~~~~~m~~ 464 (572)
.+++.+.+.+++.+|..+.-.|..
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Confidence 777766666666666666555554
No 307
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.50 E-value=40 Score=36.38 Aligned_cols=225 Identities=14% Similarity=0.042 Sum_probs=120.8
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCH-------hHHHHHHH-HHHHcCCHHHHHHHHHHHHhC----CCCCCHhhHHHHHH
Q 008249 307 CLNGDISSAFAYFCQMLKRGFLPDV-------ITYNTLLN-CLCKQGKLDEASHFYGVLSKT----GVAPDQISYKTIIQ 374 (572)
Q Consensus 307 ~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~ 374 (572)
....++.+|..++.++...-..|+. ..++.+-. .....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4567899999988887654222221 12333322 234568889988888776653 12345566777778
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHH--HHHHhcCCHH--HHHHHHHHHHhC-----CC-CCCHHHHHH
Q 008249 375 GLCIHGDIVKAREFLLSMLEKSVVPEPHIW---NVII--DGYGRCGDLS--NAFSIRDLMLSF-----GV-SSNVFTFNA 441 (572)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li--~~~~~~g~~~--~A~~~~~~~~~~-----~~-~p~~~~~~~ 441 (572)
+..-.|++++|..+..+..+..-.-+...+ ..+. ..+...|+.. +....|...... .. .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888889999999888877654222233322 2222 2344556332 223333333221 00 112344555
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHH
Q 008249 442 LILAETRG-GSIFDAFSLKKEMLLDGIFPDVFT--YNLLIGASCNLGHIHLALQLYDEMLRRGITP----DIITYTELIK 514 (572)
Q Consensus 442 ll~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l~~ 514 (572)
++.++.+. +...++..-++--......|-... +..|+......|++++|...++++......+ +...-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555552 122222222222222222222222 2367778888999999999999988643222 2222222222
Q ss_pred H--HHhcCCHHHHHHHHHH
Q 008249 515 G--HCARGNMKEAEEVFAK 531 (572)
Q Consensus 515 ~--~~~~g~~~~A~~~~~~ 531 (572)
. ....|+.+.+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2 2357888877776665
No 308
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.43 E-value=29 Score=34.77 Aligned_cols=163 Identities=12% Similarity=0.078 Sum_probs=82.5
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008249 365 DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALIL 444 (572)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 444 (572)
|....-+++..+..+.++.-...+..+|.+-| -+...|..++..|... ..+.-..+|+++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44445555566655555555566666666543 2445566666666655 445556666666665443 3444444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 008249 445 AETRGGSIFDAFSLKKEMLLDGIFPD------VFTYNLLIGASCNLGHIHLALQLYDEMLR-RGITPDIITYTELIKGHC 517 (572)
Q Consensus 445 ~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~ 517 (572)
.|.+ ++.+.+..+|.++... +-|. ...|.-|...- ..+.+..+.+...... .|..--...+.-+-.-|.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 4443 5556666666555543 1111 11233222211 2344555555555543 232333344455555566
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 008249 518 ARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 518 ~~g~~~~A~~~~~~m~~~ 535 (572)
...++++|++++....+.
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 666666666666665554
No 309
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.31 E-value=1.5 Score=25.35 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 508 TYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 508 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+|..+..+|...|++++|+..|+++.+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4555666666666666666666666654
No 310
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.25 E-value=5 Score=34.85 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCChHHHHHHHHHHHhcCCHHHHH
Q 008249 488 HLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL---GLAIDHIPFRILKKRYRRMKESDKAR 561 (572)
Q Consensus 488 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~ 561 (572)
+.|.+.|-++...+.--++.....|+..|. ..+.+++..++.+..+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 566777777766655556666666666555 45677777777777664 23567777888888888888877764
No 311
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.20 E-value=10 Score=38.59 Aligned_cols=99 Identities=17% Similarity=0.156 Sum_probs=48.5
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHH
Q 008249 199 CRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKF 278 (572)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 278 (572)
.+.|+.+.|.++..+.. +..-|..|.++....+++..|.+.|..... |..|+-.+...|+.+
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d------------~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD------------LGSLLLLYTSSGNAE 709 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc------------hhhhhhhhhhcCChh
Confidence 35556666555544332 344456666666666666666666544322 333444444555554
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008249 279 QALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQ 321 (572)
Q Consensus 279 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 321 (572)
....+-....+.| .-|. ..-+|...|+++++.+++..
T Consensus 710 ~l~~la~~~~~~g-~~N~-----AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 710 GLAVLASLAKKQG-KNNL-----AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHHHhhc-ccch-----HHHHHHHcCCHHHHHHHHHh
Confidence 4444444444444 2221 12234455666666655543
No 312
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.10 E-value=70 Score=38.76 Aligned_cols=319 Identities=10% Similarity=0.030 Sum_probs=159.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008249 228 ILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFC 307 (572)
Q Consensus 228 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 307 (572)
.+..+-.+.+.+..|...++.-..... .-......|..+...|...++++...-+...-.. .|+ .+ .-|-...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek-~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEK-EKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHHH
Confidence 344455677888888888887421111 1002334555566688888888887777664211 122 22 3344456
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHH-HHHHHHHcCCHHHHH
Q 008249 308 LNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKT-IIQGLCIHGDIVKAR 386 (572)
Q Consensus 308 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~ 386 (572)
..|++..|...|+.+...+ ++...+++-+++.....|.++...-..+-.... ..+....++. =+.+--+.++++...
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 7889999999999888763 223667777777777777777776655554443 1222222222 233335666777666
Q ss_pred HHHHHHHhCCCCCCHHHHHHH--HHHHHhcC--CHHHHHHHHHHHHhCCCCC---------CHHHHHHHHHHHHhcCCHH
Q 008249 387 EFLLSMLEKSVVPEPHIWNVI--IDGYGRCG--DLSNAFSIRDLMLSFGVSS---------NVFTFNALILAETRGGSIF 453 (572)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~~~~~~~~~~p---------~~~~~~~ll~~~~~~g~~~ 453 (572)
..+. .. +..+|... .....+.. +.-.-....+.+.+.-+.| -...|..++....-..-
T Consensus 1539 ~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el-- 1609 (2382)
T KOG0890|consen 1539 SYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL-- 1609 (2382)
T ss_pred hhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH--
Confidence 6555 11 22223222 22222221 1111112222222211110 11223333322211110
Q ss_pred HHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHH-HC----CCC-CCHHHHHHHHHHHHhcCC
Q 008249 454 DAFSLKKEMLLDGIFPD------VFTYNLLIGASCNLGHIHLALQLYDEML-RR----GIT-PDIITYTELIKGHCARGN 521 (572)
Q Consensus 454 ~a~~~~~~m~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~----g~~-p~~~~~~~l~~~~~~~g~ 521 (572)
....+... +..++ ..-|-.-+..-....+..+-+--+++.. .. ++. --..+|....+.....|+
T Consensus 1610 --~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1610 --ENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred --HHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 01111111 12222 1111111111111111222111111111 11 111 123678888888888999
Q ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008249 522 MKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARDIHQKWLLRN 571 (572)
Q Consensus 522 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 571 (572)
++.|...+-++.+.+ .| ..+.-..+.+...|+...|..++++.++.+
T Consensus 1686 ~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999999888888764 22 334456677888999999999999888654
No 313
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.08 E-value=1.6 Score=25.16 Aligned_cols=28 Identities=32% Similarity=0.304 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 508 TYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 508 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
.|..+...+...|++++|++.+++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556666777777777777777776664
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.61 E-value=1.4 Score=26.91 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 543 PFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
+++.|...|...|++++|..++++.++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 456666677777777777777776654
No 315
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.24 E-value=5 Score=30.00 Aligned_cols=42 Identities=7% Similarity=0.166 Sum_probs=19.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 492 QLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQ 533 (572)
Q Consensus 492 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 533 (572)
+-++.+....+.|++....+.+++|.+.+++..|.++++-.+
T Consensus 28 r~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 28 RGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333334444555555555555555555555555555444
No 316
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=86.89 E-value=21 Score=31.43 Aligned_cols=84 Identities=14% Similarity=0.033 Sum_probs=49.8
Q ss_pred CChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 008249 237 GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAF 316 (572)
Q Consensus 237 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 316 (572)
|-++-|.--|.+.+...| .-+.+||-|.--+...|+++.|.+.|+...+.+..-+-...|--|. +.-.|++.-|.
T Consensus 79 GL~~LAR~DftQaLai~P----~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq 153 (297)
T COG4785 79 GLRALARNDFSQALAIRP----DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQ 153 (297)
T ss_pred hHHHHHhhhhhhhhhcCC----CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhH
Confidence 444444455555555554 5566777777777888888888888888877642222222222222 22457777777
Q ss_pred HHHHHHHHC
Q 008249 317 AYFCQMLKR 325 (572)
Q Consensus 317 ~~~~~m~~~ 325 (572)
+-+-+.-+.
T Consensus 154 ~d~~~fYQ~ 162 (297)
T COG4785 154 DDLLAFYQD 162 (297)
T ss_pred HHHHHHHhc
Confidence 766665544
No 317
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.86 E-value=16 Score=30.04 Aligned_cols=51 Identities=10% Similarity=0.002 Sum_probs=24.8
Q ss_pred CCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 236 KGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 236 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
.++.+++..+++.+.-..|.. +...++... .+...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~--~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNL--KELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCc--cccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 455555555555555444322 233333322 234555566666666555544
No 318
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.45 E-value=2.3 Score=39.65 Aligned_cols=94 Identities=12% Similarity=0.021 Sum_probs=62.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008249 443 ILAETRGGSIFDAFSLKKEMLLDGIFP-DVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGN 521 (572)
Q Consensus 443 l~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 521 (572)
..-|.+.|.+++|+..|...+.. .| |.+++..-..+|.+..++..|..-....+..+ ..-...|..-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 45688899999999999887764 45 88888888889999999988887777776532 1111223333333333455
Q ss_pred HHHHHHHHHHHHHcCCCCCh
Q 008249 522 MKEAEEVFAKIQTLGLAIDH 541 (572)
Q Consensus 522 ~~~A~~~~~~m~~~g~~p~~ 541 (572)
..+|.+=++..++. .|+.
T Consensus 181 ~~EAKkD~E~vL~L--EP~~ 198 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL--EPKN 198 (536)
T ss_pred HHHHHHhHHHHHhh--Cccc
Confidence 55666656665554 5654
No 319
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.10 E-value=35 Score=33.17 Aligned_cols=65 Identities=11% Similarity=0.015 Sum_probs=40.9
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 365 DQISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVP---EPHIWNVIIDGYGRCGDLSNAFSIRDLMLS 429 (572)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 429 (572)
...+|..+...+.+.|.++.|...+..+...+... .+...-.-+..+-..|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566777777777777777777777776643211 233334445555666777777777766655
No 320
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.02 E-value=1.4 Score=25.08 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 008249 546 ILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
.++.++.+.|++++|.+.|+++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4555666666677777777666654
No 321
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.33 E-value=7.6 Score=29.39 Aligned_cols=41 Identities=7% Similarity=0.183 Sum_probs=18.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 494 YDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 494 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
++.+....+.|++.+..+.+++|.+.+++..|+++++-.+.
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333344445555555555555555555555555554443
No 322
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.11 E-value=27 Score=30.24 Aligned_cols=94 Identities=15% Similarity=0.110 Sum_probs=51.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 008249 230 VHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLN 309 (572)
Q Consensus 230 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 309 (572)
...+...|++++|...++..+.... .......+--.|.+.....|.+++|+..++.....+. .......-.+.+...
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~-De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTK-DENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccch-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 3455667777777777776664321 1001122333455566666777777777666654321 112223334556666
Q ss_pred CCHHHHHHHHHHHHHCC
Q 008249 310 GDISSAFAYFCQMLKRG 326 (572)
Q Consensus 310 g~~~~a~~~~~~m~~~g 326 (572)
|+-++|..-|.+....+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 77777777776666653
No 323
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.08 E-value=10 Score=28.43 Aligned_cols=61 Identities=8% Similarity=0.128 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008249 452 IFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELI 513 (572)
Q Consensus 452 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 513 (572)
.-++.+-++.+...++.|++......+++|-+.+++..|.++++-...+ +..+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 3445555666666677778887888888888888888888888776643 222444555544
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.99 E-value=2.9 Score=25.40 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 507 ITYTELIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 507 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888887765
No 325
>PRK11619 lytic murein transglycosylase; Provisional
Probab=83.87 E-value=65 Score=34.41 Aligned_cols=234 Identities=10% Similarity=0.015 Sum_probs=122.2
Q ss_pred CcCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 115 ETDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 115 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
+.+...-.....+....|+.++|......+-..|. ..+...+.++..+.+.|...... +.++|...-...+...-..+
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l 203 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYL 203 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHH
Confidence 45666667888889999998888877777766653 35677888888888777554332 22222211111122222222
Q ss_pred HHHHHh------------cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH--hCCChhHHHHHHHHHHhCCCCCCCcc
Q 008249 195 ITGYCR------------VNELDKALHLFSTMANNGIRPNRVTHNILVHALC--KKGLLGDAVKFLGEVLADDDGKATSD 260 (572)
Q Consensus 195 i~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~ 260 (572)
...+.. ..+...+..++.. +.|+...-..++.++. ...+.+.|..++..............
T Consensus 204 ~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~ 278 (644)
T PRK11619 204 AKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQR 278 (644)
T ss_pred HHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHH
Confidence 221100 0111111111111 1223211121122221 34456788888887655442111122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 008249 261 VITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNC 340 (572)
Q Consensus 261 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 340 (572)
..++..+.......+...++...++...... .+......-++.....++++.+...+..|-... .-...-.--+.++
T Consensus 279 ~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa 355 (644)
T PRK11619 279 QELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADL 355 (644)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHH
Confidence 3344445444444433456666666544332 244445555556667888888888887775432 2233344456666
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 008249 341 LCKQGKLDEASHFYGVLS 358 (572)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~ 358 (572)
+...|+.++|...|..+.
T Consensus 356 ~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 356 LLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHcCCHHHHHHHHHHHh
Confidence 667788888888887763
No 326
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.33 E-value=67 Score=34.19 Aligned_cols=416 Identities=14% Similarity=0.088 Sum_probs=212.4
Q ss_pred CHHhHHHHHHHHH-hCCChhhHHHHHHHHHhCCCCCChh-----hHHHHHHHHHHcCChhHHHHHHHHHhhCCCC----C
Q 008249 117 DYRRHVAVIRDLC-LGGKIGTALWLRRKMIQKGTVPDVL-----THNYLVNELCKIGDLEKADHVIREMSEMRPS----P 186 (572)
Q Consensus 117 ~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~ 186 (572)
+..++-.+...|. ...+++.|...+++.....-.++.. ....++..+.+.+... |...+++..+.--. +
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 5567788888887 5689999999999876543233222 2234567777776655 88888876653222 2
Q ss_pred CHHHHHHH-HHHHHhcCCHhHHHHHHHHHHHCC---CCCCHhHHHHHHHHHH--hCCChhHHHHHHHHHHhCC------C
Q 008249 187 NCATYNAF-ITGYCRVNELDKALHLFSTMANNG---IRPNRVTHNILVHALC--KKGLLGDAVKFLGEVLADD------D 254 (572)
Q Consensus 187 ~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~------~ 254 (572)
-...+..+ +..+...+++..|.+.++.+...- ..|-..++..++.+.. +.+..+++.+.++++.... +
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 23333333 333334479999999998886532 2344455555555443 4565677777777663311 1
Q ss_pred CCCCccHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhC-----CCC-------------------------CCHHHH---
Q 008249 255 GKATSDVITSTILMDSYF--KNGDKFQALALWNDMFQK-----NIQ-------------------------TDIVAY--- 299 (572)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~-----~~~-------------------------~~~~~~--- 299 (572)
...+|...+|..+++.++ ..|+++.+...++++.+. ... +....|
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~ 296 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPK 296 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCH
Confidence 123356777777777654 567776766665555321 000 111111
Q ss_pred ------HHHHH--HHHhCCCHHHHHHHHH-------HHH-HCCCCCC--------HhHHHHHHH---------HHHHcCC
Q 008249 300 ------NVLIN--GFCLNGDISSAFAYFC-------QML-KRGFLPD--------VITYNTLLN---------CLCKQGK 346 (572)
Q Consensus 300 ------~~li~--~~~~~g~~~~a~~~~~-------~m~-~~g~~p~--------~~~~~~ll~---------~~~~~g~ 346 (572)
.-++. ..+..+..+.|.++++ +.. .....+. ...+...+. ..+-.++
T Consensus 297 ~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~ 376 (608)
T PF10345_consen 297 EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD 376 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 11122 1233444445555544 444 1111111 111211221 2245688
Q ss_pred HHHHHHHHHHHHhCCC-CC-----CHhhHHHHHH--HHHHcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHH---
Q 008249 347 LDEASHFYGVLSKTGV-AP-----DQISYKTIIQ--GLCIHGDIVKAREFLL--------SMLEKSVVPEPHIWNVI--- 407 (572)
Q Consensus 347 ~~~A~~~~~~~~~~~~-~~-----~~~~~~~li~--~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l--- 407 (572)
+..|...+..+.+... .| ....+..++. .+-..|+.+.|...|. .....+...+...+..+
T Consensus 377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~ 456 (608)
T PF10345_consen 377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLA 456 (608)
T ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHH
Confidence 8889998888876421 11 1223333333 3345799999999998 44444444444433321
Q ss_pred -HHHHHhcCCHHH--HHHHHHHHHhC---CCCCCHHHHHHHH-HHHHhcCC--HHHHHHHHHHHHhC---CCCCC---HH
Q 008249 408 -IDGYGRCGDLSN--AFSIRDLMLSF---GVSSNVFTFNALI-LAETRGGS--IFDAFSLKKEMLLD---GIFPD---VF 472 (572)
Q Consensus 408 -i~~~~~~g~~~~--A~~~~~~~~~~---~~~p~~~~~~~ll-~~~~~~g~--~~~a~~~~~~m~~~---~~~p~---~~ 472 (572)
|--+.......+ +..+++.+... ....+..++..++ .++..... ..++...+.+..+. ....+ ..
T Consensus 457 ~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~ 536 (608)
T PF10345_consen 457 IILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAI 536 (608)
T ss_pred HHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 111122222333 66777766442 1122334444443 33322111 12444433332211 11111 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHH
Q 008249 473 TYNLLIGASCNLGHIHLALQLYDEMLRRG-ITP--DIITYTE-----LIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~-----l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
+++.+...+. .|+..+............ -.| ....|.. +...+...|+.++|.....+...
T Consensus 537 ~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 537 LLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 3333333343 688777665555433211 112 3345533 33446678999999998877654
No 327
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.20 E-value=73 Score=34.50 Aligned_cols=227 Identities=15% Similarity=0.052 Sum_probs=124.4
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCH-------hhHHHHHHH-HHHcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHH
Q 008249 341 LCKQGKLDEASHFYGVLSKTGVAPDQ-------ISYKTIIQG-LCIHGDIVKAREFLLSMLEK----SVVPEPHIWNVII 408 (572)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li 408 (572)
.....++++|..+..++...-..|+. ..++.+-.. ....|++++|.++.+...+. -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567899999988887664222222 123333222 23468889999888877653 2344566778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHH--HHHHhcCCH--HHHHHHHHHHHhC-----CC-CCCHHHHH
Q 008249 409 DGYGRCGDLSNAFSIRDLMLSFGVSSNVFT---FNALI--LAETRGGSI--FDAFSLKKEMLLD-----GI-FPDVFTYN 475 (572)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~ll--~~~~~~g~~--~~a~~~~~~m~~~-----~~-~p~~~~~~ 475 (572)
.+..-.|++++|..+.....+..-.-++.. |..+. ..+...|+. .+....+...... .. .+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888889999999988877655322223333 33332 234556632 2333333333221 10 11234455
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----ChHHHHHHH
Q 008249 476 LLIGASCNL-GHIHLALQLYDEMLRRGITPDIIT--YTELIKGHCARGNMKEAEEVFAKIQTLGLAI----DHIPFRILK 548 (572)
Q Consensus 476 ~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l~ 548 (572)
.+..++.+. +...++..-+.--......|-..- +..|+..+...|+.++|...+.++......+ +...-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 555555551 222222222222222211121222 2367788889999999999999988753333 222222222
Q ss_pred H--HHHhcCCHHHHHHHHHHH
Q 008249 549 K--RYRRMKESDKARDIHQKW 567 (572)
Q Consensus 549 ~--~~~~~g~~~~A~~~~~~~ 567 (572)
+ .....|+.+++.....+-
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred hHHHhcccCCHHHHHHHHHhc
Confidence 2 234678888887776663
No 328
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.04 E-value=69 Score=34.09 Aligned_cols=102 Identities=14% Similarity=0.131 Sum_probs=59.7
Q ss_pred HHHHHhCCChhhHHHHHHHHHhCCCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008249 125 IRDLCLGGKIGTALWLRRKMIQKGTVP---DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRV 201 (572)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 201 (572)
|+-+.+.+.+++|+.+.+..... .| .......+|..+...|++++|-...-.|.. -+..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 45567777888887776654432 33 234566777777778888888777777743 4555666666666555
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 008249 202 NELDKALHLFSTMANNGIRPNRVTHNILVHALCK 235 (572)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 235 (572)
++......+ +.......++..|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 554433222 2211112345566666666655
No 329
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.69 E-value=7.5 Score=36.49 Aligned_cols=94 Identities=17% Similarity=0.054 Sum_probs=64.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008249 408 IDGYGRCGDLSNAFSIRDLMLSFGVSS-NVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGH 486 (572)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 486 (572)
.+-|.+.|.+++|+..|...... .| |.+++..-..+|.+...+..|+.-....+..+ ..-...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 35689999999999999887764 34 78888888889999998888777666655431 1112334444444444566
Q ss_pred HHHHHHHHHHHHHCCCCCCH
Q 008249 487 IHLALQLYDEMLRRGITPDI 506 (572)
Q Consensus 487 ~~~A~~~~~~m~~~g~~p~~ 506 (572)
..+|.+-++...+ +.|+.
T Consensus 181 ~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 181 NMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred HHHHHHhHHHHHh--hCccc
Confidence 7777777776666 46663
No 330
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.68 E-value=31 Score=29.97 Aligned_cols=21 Identities=38% Similarity=0.382 Sum_probs=10.9
Q ss_pred HHHcCChhHHHHHHHHHhhCC
Q 008249 163 LCKIGDLEKADHVIREMSEMR 183 (572)
Q Consensus 163 ~~~~g~~~~A~~~~~~~~~~~ 183 (572)
+.+.|++++|..-+.+.++.-
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c 125 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC 125 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC
Confidence 445555555555555555433
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.62 E-value=2.3 Score=24.22 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=15.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 511 ELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 511 ~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
.+..++.+.|++++|.+.|+++.+.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4455556666666666666666654
No 332
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.21 E-value=42 Score=31.08 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 008249 263 TSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQML 323 (572)
Q Consensus 263 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 323 (572)
+.+.....|..+|.+.+|.++-+.....+ +.+...+-.++..+...|+--.+.+.++.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34444556666777777777666666654 5566666666677777776666666655554
No 333
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.79 E-value=44 Score=30.98 Aligned_cols=71 Identities=17% Similarity=0.140 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChHHH
Q 008249 473 TYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT-----LGLAIDHIPF 544 (572)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 544 (572)
+++.....|..+|.+.+|.++.++.+... +.+...|-.++..+...|+--.|.+.++++.+ .|+..|..++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34455667788888899988888888753 56677788888888888887778777777653 3666665543
No 334
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.78 E-value=13 Score=32.61 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=25.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 008249 195 ITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVL 250 (572)
Q Consensus 195 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 250 (572)
++.+.+.+...+++.+.++-.+.. +.|..+-..++..+|-.|++++|..-++-+-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 444445555555555554444432 1133334444455555555555554444433
No 335
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.47 E-value=0.54 Score=38.91 Aligned_cols=122 Identities=9% Similarity=0.040 Sum_probs=77.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008249 441 ALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARG 520 (572)
Q Consensus 441 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 520 (572)
.++..+.+.+.++....+++.+...+..-+....+.++..|++.++.++..++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 356777778888888888888887665667888888999999888878888777621 1122345777788888
Q ss_pred CHHHHHHHHHHHHHcC--CC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 521 NMKEAEEVFAKIQTLG--LA--IDHIPFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 521 ~~~~A~~~~~~m~~~g--~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
.+++|.-++.++.... +. -+...+...+..+.+.++.+-...+.+..++
T Consensus 85 l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~ 137 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLD 137 (143)
T ss_dssp SHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 8888888888765431 11 1222344444445555554444444444443
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.28 E-value=11 Score=33.02 Aligned_cols=59 Identities=20% Similarity=0.146 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 227 NILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQ 289 (572)
Q Consensus 227 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 289 (572)
+.-++.+.+.+.+++++...++-++..+ .+...-..+++.+|-.|++++|..-++..-+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakP----tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKP----TDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCC----ccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3445556666777777777777776555 5566666677777777777777766665544
No 337
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.76 E-value=17 Score=31.06 Aligned_cols=109 Identities=16% Similarity=0.107 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHHH-------HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 008249 417 LSNAFSIRDLMLSFGVSSNVFTFNA---LILAETRGGSIFDA-------FSLKKEMLLDGIFPD-VFTYNLLIGASCNLG 485 (572)
Q Consensus 417 ~~~A~~~~~~~~~~~~~p~~~~~~~---ll~~~~~~g~~~~a-------~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g 485 (572)
++.|.+.++.-...++ .|...++. .+.-+++..+..++ +.-|++.+. +.|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~nP-~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNP-LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 3455555555444332 24443333 33333333443334 333444444 4565 466667777766443
Q ss_pred C-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008249 486 H-----------IHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG 536 (572)
Q Consensus 486 ~-----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 536 (572)
. +++|...|++..+ ..|+..+|+.-+... ++|-++..++.+.+
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 2 4455555555555 367777777766654 24566666666554
No 338
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.46 E-value=0.68 Score=38.33 Aligned_cols=85 Identities=12% Similarity=0.106 Sum_probs=58.5
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008249 123 AVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN 202 (572)
Q Consensus 123 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 202 (572)
.+|..+.+.+.+..+.++++.+...+...+....+.++..|++.+..++..+.++.... .-...++..+.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcc
Confidence 36677777888888888888888776566788888999999998877887666652211 22335566666677
Q ss_pred CHhHHHHHHHHH
Q 008249 203 ELDKALHLFSTM 214 (572)
Q Consensus 203 ~~~~A~~~~~~m 214 (572)
.+++|.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 777776666554
No 339
>PRK09687 putative lyase; Provisional
Probab=79.59 E-value=55 Score=30.71 Aligned_cols=235 Identities=12% Similarity=-0.028 Sum_probs=131.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH----HHHHHHHHHHHhCCCCCCHhh
Q 008249 293 QTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKL----DEASHFYGVLSKTGVAPDQIS 368 (572)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~ 368 (572)
.+|.......+.++...|. +++...+..+... +|...-...+.++++.|+. +++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 3455556666666666654 3333333344332 3444445556666666653 3456666555332 355555
Q ss_pred HHHHHHHHHHcCC-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008249 369 YKTIIQGLCIHGD-----IVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALI 443 (572)
Q Consensus 369 ~~~li~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 443 (572)
-...+.++...+. ...+...+...... ++..+-...+.++.+.++. .+...+-.+.+. +|...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHH
Confidence 5566666655432 12333444333332 3555556667777777764 455555555542 3444444555
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008249 444 LAETRGG-SIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNM 522 (572)
Q Consensus 444 ~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 522 (572)
.++.+.+ ..+.+...+..+.. .+|...-...+.++.+.|+. .|+..+-...+.+ + .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 5555442 23456666666664 35667777778888888874 4555555555432 2 234677777788875
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 008249 523 KEAEEVFAKIQTLGLAIDHIPFRILKKRYR 552 (572)
Q Consensus 523 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 552 (572)
+|...+.++.+. .||..+-...+.++.
T Consensus 252 -~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 688888888764 356666665655554
No 340
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=79.50 E-value=61 Score=31.17 Aligned_cols=115 Identities=12% Similarity=0.072 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 008249 454 DAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCA---RGNMKEAEEVFA 530 (572)
Q Consensus 454 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~ 530 (572)
.-+.+++++.+.+. -+...+..++..+.+..+.++..+-|+++.... +-+...|...+..... .-.++....+|.
T Consensus 49 ~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 33445555555422 234444555555555555555566666665541 2244555555544433 123444444444
Q ss_pred HHHHc------CC------CCC--hH---HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008249 531 KIQTL------GL------AID--HI---PFRILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 531 ~m~~~------g~------~p~--~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
+..+. +. .++ .. .+..+...+..+|..+.|..+++.+++.
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 43321 11 000 01 1222333345677777777777766654
No 341
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=79.25 E-value=74 Score=32.02 Aligned_cols=410 Identities=11% Similarity=0.088 Sum_probs=196.3
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCCHhHHHHHHHHHH
Q 008249 137 ALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR-VNELDKALHLFSTMA 215 (572)
Q Consensus 137 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~ 215 (572)
-..+|+....+ ...|+..|...+..+-+.+.+.+...+|..|....| .++..|-.-..-... .-+++.|..+|.+-+
T Consensus 90 Iv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp-~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 90 IVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHP-NNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 34455555554 344889999999988888889999999999999776 355555444433333 344999999998887
Q ss_pred HCCCCCC-HhHHHHHHHH---HH-hC-------C-ChhHH-HHHHHH--HHhCCCCCCCccHHHHHHH---HHHHHhcCC
Q 008249 216 NNGIRPN-RVTHNILVHA---LC-KK-------G-LLGDA-VKFLGE--VLADDDGKATSDVITSTIL---MDSYFKNGD 276 (572)
Q Consensus 216 ~~g~~p~-~~~~~~ll~~---~~-~~-------g-~~~~a-~~~~~~--~~~~~~~~~~~~~~~~~~l---~~~~~~~g~ 276 (572)
+. .|+ +..|....+. +. +. | +.++- .++-.. .-...... .+..-++.- .+...+...
T Consensus 168 R~--npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s--~~~~~~~~k~~e~~~~~~~d~ 243 (568)
T KOG2396|consen 168 RF--NPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANS--VDIIKGAVKSVELSVAEKFDF 243 (568)
T ss_pred hc--CCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccc--hhhhhcchhhcchHHHHHHHH
Confidence 75 344 3333322221 11 00 0 00000 111000 00000000 000000000 000001011
Q ss_pred HHHHH-HHHHHHHhCCCCCCHHHHHHHHH----HHHh---------------CCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 008249 277 KFQAL-ALWNDMFQKNIQTDIVAYNVLIN----GFCL---------------NGDISSAFAYFCQMLKRGFLPDVITYNT 336 (572)
Q Consensus 277 ~~~A~-~~~~~~~~~~~~~~~~~~~~li~----~~~~---------------~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 336 (572)
..+.. .+.+.+. .+.+.++.+|.-+.. .+.+ .-+.+....+|++.... .|+...++.
T Consensus 244 ~kel~k~i~d~~~-~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~ 320 (568)
T KOG2396|consen 244 LKELQKNIIDDLQ-SKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWEC 320 (568)
T ss_pred HHHHHHHHHHHHh-ccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHH
Confidence 11111 1122222 222445555543322 1111 01223344555555543 345555555
Q ss_pred HHHHHHHcC------CHHHHHHHHHHHHhCC-CCC-CHhhHHHHHHHHHHcCCHH-HHHHHHHHHHhCCCCCCHHHHHHH
Q 008249 337 LLNCLCKQG------KLDEASHFYGVLSKTG-VAP-DQISYKTIIQGLCIHGDIV-KAREFLLSMLEKSVVPEPHIWNVI 407 (572)
Q Consensus 337 ll~~~~~~g------~~~~A~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l 407 (572)
.|..|...- .......+++.....+ ..+ ....|..+.-.++...... -|..+..+... -+...|-.-
T Consensus 321 YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~----~s~k~~~~k 396 (568)
T KOG2396|consen 321 YITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFR----DSGKMWQLK 396 (568)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhc----chHHHHHHH
Confidence 555554322 2333444444444332 222 2344555555555544332 23333323322 244444443
Q ss_pred HHHHHhcC-CHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHH-HH-HHHHHHhCCCCCCHHHH-HHHHHHH
Q 008249 408 IDGYGRCG-DLSNA-FSIRDLMLSFGVSSNVFTFNALILAETRGGS-IFDA-FS-LKKEMLLDGIFPDVFTY-NLLIGAS 481 (572)
Q Consensus 408 i~~~~~~g-~~~~A-~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~-~~~a-~~-~~~~m~~~~~~p~~~~~-~~li~~~ 481 (572)
+....... +.+-- ..++......-..+....|+... .|+ +... .. ++...... ..|+..++ +.+++-+
T Consensus 397 l~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-~~~~~~tl~s~~l~~~ 470 (568)
T KOG2396|consen 397 LQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV-IGADSVTLKSKYLDWA 470 (568)
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-cCCceeehhHHHHHHH
Confidence 33333221 22111 11222233322223333343333 122 1111 11 22222222 34555544 5677778
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHH
Q 008249 482 CNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCA--RGNMKEAEEVFAKIQTL-GLAIDHIPFRILKKRYRRMKESD 558 (572)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~ 558 (572)
.+.|-..+|...+..+.... +|+...|..++..-.. .-+...+.++++.|... | .|+..|.-.+.-=...|..+
T Consensus 471 ~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~e 547 (568)
T KOG2396|consen 471 YESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPE 547 (568)
T ss_pred HHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcc
Confidence 88899999999999998863 6677778877764332 23477888999998875 5 56666776666556788888
Q ss_pred HHHHHHHHHH
Q 008249 559 KARDIHQKWL 568 (572)
Q Consensus 559 ~A~~~~~~~l 568 (572)
.+-.++.+++
T Consensus 548 n~~~~~~ra~ 557 (568)
T KOG2396|consen 548 NCGQIYWRAM 557 (568)
T ss_pred cccHHHHHHH
Confidence 8777776654
No 342
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.49 E-value=3.5 Score=22.21 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=10.3
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 008249 546 ILKKRYRRMKESDKARDIHQ 565 (572)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~ 565 (572)
.+...+...|+.++|.++++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555543
No 343
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.83 E-value=7 Score=22.37 Aligned_cols=29 Identities=34% Similarity=0.260 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 507 ITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 507 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
.+|..+...|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677788888888888888888887764
No 344
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.83 E-value=5.7 Score=24.87 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=14.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 512 LIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 512 l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 555666666666666666666644
No 345
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=77.77 E-value=98 Score=32.61 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 008249 518 ARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKR 550 (572)
Q Consensus 518 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 550 (572)
+.|++.+|.+.+-.+.+.++.|...-...|.++
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ---------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 457778887777777777666766544444443
No 346
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.74 E-value=23 Score=30.24 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC----C-------HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCC
Q 008249 278 FQALALWNDMFQKNIQTDIVAYNVLINGFCLNG----D-------ISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGK 346 (572)
Q Consensus 278 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~-------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 346 (572)
++|+.-|++....+ |....++..+..+|...+ + +++|.+.|++..+. .|+...|+.-+....
T Consensus 52 edAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~---- 124 (186)
T PF06552_consen 52 EDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA---- 124 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH----
Confidence 34444444444432 223355555555554432 2 34444444444443 677777777766553
Q ss_pred HHHHHHHHHHHHhCC
Q 008249 347 LDEASHFYGVLSKTG 361 (572)
Q Consensus 347 ~~~A~~~~~~~~~~~ 361 (572)
+|-+++.++.+.+
T Consensus 125 --kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 --KAPELHMEIHKQG 137 (186)
T ss_dssp --THHHHHHHHHHSS
T ss_pred --hhHHHHHHHHHHH
Confidence 3555555555554
No 347
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.35 E-value=29 Score=26.38 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=15.8
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008249 176 IREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMA 215 (572)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 215 (572)
+..+.....-|.+....+.+++|-+.+++..|.++|+-.+
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444443
No 348
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.29 E-value=4.5 Score=22.09 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 008249 544 FRILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 544 ~~~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
|..+...+...|++++|...|++.++.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 344455555555555555555555443
No 349
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.72 E-value=5 Score=25.13 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 008249 546 ILKKRYRRMKESDKARDIHQKWLLR 570 (572)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~~~l~~ 570 (572)
.|..+|...|+.+.|++++++.++.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 4778999999999999999999854
No 350
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=76.34 E-value=35 Score=27.55 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 469 PDVFTYNLLIGASCNLG---HIHLALQLYDEMLRRGITPDI--ITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 469 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
++..+--.+..++.+.. +..+.+.++++..+.. +|+. .....|.-++.+.|+++++.++++.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 44444444555555443 3445566666665422 2221 22233445566666666666666666664
No 351
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=76.32 E-value=66 Score=29.92 Aligned_cols=115 Identities=12% Similarity=0.149 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-CC-CHHHHHHHHHHHHH-CCCCCCHhHHHHHHHHHHHcCCHHHHH
Q 008249 276 DKFQALALWNDMFQ-KNIQTDIVAYNVLINGFCL-NG-DISSAFAYFCQMLK-RGFLPDVITYNTLLNCLCKQGKLDEAS 351 (572)
Q Consensus 276 ~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~A~ 351 (572)
.+.+|+++|+.... ..+-.|..+...+++.... .+ ....-.++.+-+.. .|-.++..+...+++.++..+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666653221 2234566666666666554 21 22223333333332 245667777778888888888888888
Q ss_pred HHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 008249 352 HFYGVLSKT-GVAPDQISYKTIIQGLCIHGDIVKAREFLL 390 (572)
Q Consensus 352 ~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 390 (572)
++++..... +...|...|..+|......|+..-..++..
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 888777665 555678888888888888888765555544
No 352
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=75.46 E-value=39 Score=30.13 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=12.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 512 LIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 512 l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+.....+.|+.++|.+.|.++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 334444555555555555555554
No 353
>PHA02875 ankyrin repeat protein; Provisional
Probab=75.44 E-value=92 Score=31.13 Aligned_cols=16 Identities=6% Similarity=0.248 Sum_probs=7.0
Q ss_pred HHHHHcCCHHHHHHHH
Q 008249 339 NCLCKQGKLDEASHFY 354 (572)
Q Consensus 339 ~~~~~~g~~~~A~~~~ 354 (572)
...+..|+.+.+..++
T Consensus 73 ~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 73 HDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHCCCHHHHHHHH
Confidence 3344455554443333
No 354
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.09 E-value=46 Score=30.69 Aligned_cols=88 Identities=10% Similarity=0.076 Sum_probs=47.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHH-----
Q 008249 159 LVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHAL----- 233 (572)
Q Consensus 159 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----- 233 (572)
-|++++..|++.+++...-+-.+..-+.-......-|-.|.+.+++..+.++-..-.+..-.-+...|..++..|
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 456666667766666554444332222223334444556667777777777666665532222333355444443
Q ss_pred HhCCChhHHHHHH
Q 008249 234 CKKGLLGDAVKFL 246 (572)
Q Consensus 234 ~~~g~~~~a~~~~ 246 (572)
.-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 3457777777666
No 355
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=75.03 E-value=72 Score=29.70 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHH-CCCCCCHhHHHHHHHHHHH-cCC-HHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHHcCCHHHH
Q 008249 310 GDISSAFAYFCQMLK-RGFLPDVITYNTLLNCLCK-QGK-LDEASHFYGVLSK-TGVAPDQISYKTIIQGLCIHGDIVKA 385 (572)
Q Consensus 310 g~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~g~-~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A 385 (572)
..+.+|+++|+.... ..+--|..+...+++.... .+. ...-.++.+.+.. .+-.++..+...++..+++.+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345666776663222 2244466666666666554 222 1222233333332 23456666777777777778888777
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 386 REFLLSMLEK-SVVPEPHIWNVIIDGYGRCGDLSNAFSIRDL 426 (572)
Q Consensus 386 ~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 426 (572)
.+++...... +...|...|..+|..-...|+..-...+.++
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 7777766654 4555667777777777777777655555543
No 356
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.67 E-value=1.4e+02 Score=32.89 Aligned_cols=39 Identities=8% Similarity=0.094 Sum_probs=24.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008249 375 GLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR 413 (572)
Q Consensus 375 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 413 (572)
.|......+-++.+++.+....-.++....+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 344556666777777777766555566666666666654
No 357
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.64 E-value=40 Score=31.08 Aligned_cols=91 Identities=12% Similarity=0.006 Sum_probs=64.9
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008249 121 HVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR 200 (572)
Q Consensus 121 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 200 (572)
...=|++++.-+++.+++.+.-.--+.--...+.+...=|-.|.|.|++..+.++-....+..-..+...|..++..|..
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 44558999999999998866544433322234455566677799999999998888887775444445557777666654
Q ss_pred -----cCCHhHHHHHH
Q 008249 201 -----VNELDKALHLF 211 (572)
Q Consensus 201 -----~g~~~~A~~~~ 211 (572)
.|.+++|.++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 69999999887
No 358
>PHA02875 ankyrin repeat protein; Provisional
Probab=73.99 E-value=1e+02 Score=30.87 Aligned_cols=111 Identities=11% Similarity=0.128 Sum_probs=48.9
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhCCCCCChh--hHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHH---HHHHHHHHH
Q 008249 124 VIRDLCLGGKIGTALWLRRKMIQKGTVPDVL--THNYLVNELCKIGDLEKADHVIREMSEMRPSPNCA---TYNAFITGY 198 (572)
Q Consensus 124 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~ 198 (572)
.+...+..|+.+ +.+.+.+.|..|+.. ....-+...++.|+.+.+..+++ .|...+.. .-.+.+...
T Consensus 38 pL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A 109 (413)
T PHA02875 38 PIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LGKFADDVFYKDGMTPLHLA 109 (413)
T ss_pred HHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cCCcccccccCCCCCHHHHH
Confidence 444455666654 333444555544322 11233445556677766644443 22211100 011233344
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhH--HHHHHHHHHhCCChhHHHHHH
Q 008249 199 CRVNELDKALHLFSTMANNGIRPNRVT--HNILVHALCKKGLLGDAVKFL 246 (572)
Q Consensus 199 ~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~a~~~~ 246 (572)
+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+.-++
T Consensus 110 ~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 110 TILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI 155 (413)
T ss_pred HHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 455654 34444455565554321 112334445566655444443
No 359
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=73.62 E-value=99 Score=30.63 Aligned_cols=333 Identities=17% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhC
Q 008249 157 NYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKK 236 (572)
Q Consensus 157 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 236 (572)
|-++.-|...|+..+|.+..+++ ..+.......-+++...+.-..|..+.-.+...+..-+...-..+.+++.+.
T Consensus 218 n~~l~eyv~~getrea~rciR~L-----~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~ 292 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIREL-----GVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRK 292 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHh-----CCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhh
Q ss_pred C--------ChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008249 237 G--------LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCL 308 (572)
Q Consensus 237 g--------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 308 (572)
+ +...|...|+.+....+ . ..-..-+.+-..-...|+.+.....=+.+. .+|+-|..
T Consensus 293 ~~slddl~ldiP~a~~~~esiv~Ka~-s--~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~------------~IIqEYFl 357 (645)
T KOG0403|consen 293 GGSLDDLVLDIPSARYDFESIVPKAP-S--GGWLDENSFKETSVLPGDSENLRAFKKDLT------------PIIQEYFL 357 (645)
T ss_pred ccccccccccCcchhhhhhhhcccCC-C--CCccchhhhcccccCCCcchHHHHHHHhhH------------HHHHHHHh
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC----CHHH
Q 008249 309 NGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGLCIHG----DIVK 384 (572)
Q Consensus 309 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~ 384 (572)
.|+..+..+.++.+-.....|-...+..-+..=.+...-+.|-.++..+.-. +-++...-+.+...+-... +...
T Consensus 358 sgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e-~fsteDv~~~F~mLLesaedtALD~p~ 436 (645)
T KOG0403|consen 358 SGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGE-VFSTEDVEKGFDMLLESAEDTALDIPR 436 (645)
T ss_pred cCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcc-cCCHHHHHHHHHHHHhcchhhhccccc
Q ss_pred HHHHHHHHHhCCCCCCHHHH--------------------------------------------------------HHHH
Q 008249 385 AREFLLSMLEKSVVPEPHIW--------------------------------------------------------NVII 408 (572)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~--------------------------------------------------------~~li 408 (572)
|-+.+...+.+.+.-++-.- ..|+
T Consensus 437 a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LL 516 (645)
T KOG0403|consen 437 ASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLL 516 (645)
T ss_pred cHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--
Q 008249 409 DGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGH-- 486 (572)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-- 486 (572)
.-|...|+..+|....+++.---+. ....+-+++.+..+.|+-...+.++++.-..|+- |-+.+-.+|.+..+
T Consensus 517 eEY~~~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI----T~nQMtkGf~RV~dsl 591 (645)
T KOG0403|consen 517 EEYELSGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI----TTNQMTKGFERVYDSL 591 (645)
T ss_pred HHHHhccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce----eHHHhhhhhhhhhccC
Q ss_pred ------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008249 487 ------IHLALQLYDEMLRRGITPDIITYTELIKGH 516 (572)
Q Consensus 487 ------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 516 (572)
+..|.+.|+...+.+ ..+-..|..|-..|
T Consensus 592 ~DlsLDvPna~ekf~~~Ve~~-~~~G~i~~~l~~~~ 626 (645)
T KOG0403|consen 592 PDLSLDVPNAYEKFERYVEEC-FQNGIISKQLRDLC 626 (645)
T ss_pred cccccCCCcHHHHHHHHHHHH-HHcCchhHHhhhcc
No 360
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=73.22 E-value=8.1 Score=39.08 Aligned_cols=88 Identities=14% Similarity=0.153 Sum_probs=49.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 008249 483 NLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRRMKESDKARD 562 (572)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 562 (572)
..|+...|...+..+....-.-..+..-.|.....+.|....|..++.+..... ...+.++..+++++....+.++|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 456666666666655432101111233445555556666666666666666553 3345556666666666667777777
Q ss_pred HHHHHHhcC
Q 008249 563 IHQKWLLRN 571 (572)
Q Consensus 563 ~~~~~l~~~ 571 (572)
.|+.+++.+
T Consensus 698 ~~~~a~~~~ 706 (886)
T KOG4507|consen 698 AFRQALKLT 706 (886)
T ss_pred HHHHHHhcC
Confidence 776666543
No 361
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.15 E-value=52 Score=27.19 Aligned_cols=49 Identities=12% Similarity=0.221 Sum_probs=28.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 273 KNGDKFQALALWNDMFQKNIQTD---IVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 273 ~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
..++.+++..+++.|.-. .|+ ..++.. ..+...|+|++|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDG--WLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHH--HHHHHcCCHHHHHHHHHhhhcc
Confidence 356666776666666543 222 222222 2345667777777777776665
No 362
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.61 E-value=27 Score=35.57 Aligned_cols=103 Identities=22% Similarity=0.127 Sum_probs=66.2
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHH
Q 008249 200 RVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQ 279 (572)
Q Consensus 200 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 279 (572)
-.|+...|...+............+....|.....+.|-..+|-.++.+.+.... ..+.++-.+.++|.-..+++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~----sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS----SEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc----cCchHHHhcchhHHHHhhhHH
Confidence 3577777777776665432222334455566666667777777777777766553 455667777777777788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008249 280 ALALWNDMFQKNIQTDIVAYNVLINGFC 307 (572)
Q Consensus 280 A~~~~~~~~~~~~~~~~~~~~~li~~~~ 307 (572)
|++.|+...+.. +.+.+.-+.|...-|
T Consensus 695 a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 888887777765 445555666555444
No 363
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.21 E-value=14 Score=26.46 Aligned_cols=44 Identities=16% Similarity=0.052 Sum_probs=19.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 008249 449 GGSIFDAFSLKKEMLLDGIFPD--VFTYNLLIGASCNLGHIHLALQ 492 (572)
Q Consensus 449 ~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~ 492 (572)
..+.++|+..|+...+.-..|. -.++..|+.+|+..|++.+++.
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444322221 2234444455555555544443
No 364
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=70.72 E-value=75 Score=28.89 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHc---CCCCChHHHHHHHH-----HHHhcCCHHHHHHHHHHHHh
Q 008249 522 MKEAEEVFAKIQTL---GLAIDHIPFRILKK-----RYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 522 ~~~A~~~~~~m~~~---g~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~l~ 569 (572)
.+.|.+.|+++... .++|...++-.|+- .|-..|+.++|.++-++.++
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 35566666665432 25565554433322 24457888888888777654
No 365
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=70.55 E-value=1.1e+02 Score=29.93 Aligned_cols=100 Identities=11% Similarity=0.024 Sum_probs=60.3
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHhC-------CC------------------CCChhhHHH---HHHHHHHcCC
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQK-------GT------------------VPDVLTHNY---LVNELCKIGD 168 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~------------------~~~~~~~~~---li~~~~~~g~ 168 (572)
-+.++..+-..+.++|+.+.|..+.++.+-. .+ .-|...|.+ .+..+.+.|.
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 3446777888888899988888877775311 11 012222222 3455666777
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHhHHHHHHHHHHH
Q 008249 169 LEKADHVIREMSEMRPSPNCATYNAFITGYC-RVNELDKALHLFSTMAN 216 (572)
Q Consensus 169 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~ 216 (572)
+..|.++.+-+...+|.-|...-..+|+.|+ +.++++--+++++....
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 7777777777777666555555555555554 45666666666665543
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.66 E-value=15 Score=26.38 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=7.3
Q ss_pred CCChhHHHHHHHHHHhC
Q 008249 236 KGLLGDAVKFLGEVLAD 252 (572)
Q Consensus 236 ~g~~~~a~~~~~~~~~~ 252 (572)
.++.++|+..+..+++.
T Consensus 19 ~~~~~~Al~~W~~aL~k 35 (80)
T PF10579_consen 19 QNETQQALQKWRKALEK 35 (80)
T ss_pred cchHHHHHHHHHHHHhh
Confidence 33444444444444443
No 367
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=69.59 E-value=1.1e+02 Score=29.44 Aligned_cols=63 Identities=10% Similarity=-0.089 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH
Q 008249 205 DKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYF 272 (572)
Q Consensus 205 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (572)
+.-+.++++.++.+ +.+...+..++..+.+..+.++..+.+++++...+ .+...|...++...
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~----~~~~LW~~yL~~~q 110 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP----GSPELWREYLDFRQ 110 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC----CChHHHHHHHHHHH
Confidence 34455555555542 22444455555666666666666666666666544 45555555555443
No 368
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=69.20 E-value=1.4e+02 Score=30.38 Aligned_cols=180 Identities=14% Similarity=0.084 Sum_probs=110.9
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008249 151 PDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILV 230 (572)
Q Consensus 151 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 230 (572)
.|....-+++..+...-...-.+.+..+|.+.|. +-..|..++.+|..+ ..++-..+++++.+..+. |++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 3555666778888877777777888888888663 567788888888887 567788888888876543 444444455
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 008249 231 HALCKKGLLGDAVKFLGEVLADDDGKATSD---VITSTILMDSYFKNGDKFQALALWNDMFQK-NIQTDIVAYNVLINGF 306 (572)
Q Consensus 231 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~ 306 (572)
..|-+ ++.+.+..+|.+++..-... ..+ ...|..+... -..+.+..+.+..++... |...-.+.+.-+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~-~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPR-RQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcch-hhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 54444 78888888888877643300 011 1244444331 134555556655555443 3334445555566667
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 008249 307 CLNGDISSAFAYFCQMLKRGFLPDVITYNTLLN 339 (572)
Q Consensus 307 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 339 (572)
....++.+|++++..+.+.. ..|...-..++.
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 77777777777777766653 224444444444
No 369
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.26 E-value=50 Score=25.07 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=28.2
Q ss_pred HHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 008249 162 ELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNG 218 (572)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 218 (572)
.+...|++++|..+.+.+ +.||...|-+|-.. +.|.-+++..-+.+|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 345566666665555444 45666666555433 4555555555555555554
No 370
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=67.98 E-value=42 Score=26.95 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 524 EAEEVFAKIQTLGLAIDHI-PFRILKKRYRRMKESDKARDIHQKW 567 (572)
Q Consensus 524 ~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 567 (572)
.+.++|+.|...|+--... .|......+...|++++|.++|+..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 7777777777776655433 4666777777778888887777654
No 371
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.23 E-value=1.1e+02 Score=28.45 Aligned_cols=198 Identities=15% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCC-------HhHHHHHHHHHHHcCCHHHHHHHH----HHHHhCCCCCCHhhHH
Q 008249 302 LINGFCLNGDISSAFAYFCQMLKRGFLPD-------VITYNTLLNCLCKQGKLDEASHFY----GVLSKTGVAPDQISYK 370 (572)
Q Consensus 302 li~~~~~~g~~~~a~~~~~~m~~~g~~p~-------~~~~~~ll~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~ 370 (572)
+.+-..+.+++++|+..+.++...|+..| ..+...+...|.+.|+...-.+.. +.|....-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHH-----HHHHHHHHhcCCHHHHHH----HHHHHHhCCCCCCHHHHH
Q 008249 371 TIIQGLCIHGD-IVKAREFLLSMLEKSVVPEPHIW-----NVIIDGYGRCGDLSNAFS----IRDLMLSFGVSSNVFTFN 440 (572)
Q Consensus 371 ~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~----~~~~~~~~~~~p~~~~~~ 440 (572)
+++..+....+ ++.-++++....+...+-..... ..++..+.+.|.+.+|.. ++.++.+..-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Q ss_pred HHH-HHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHH
Q 008249 441 ALI-LAETRGGSIFDAFSLKKEMLLD----GIFPDVFTYNLLIGA--SCNLGHIHLALQLYDEMLR 499 (572)
Q Consensus 441 ~ll-~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~ 499 (572)
.+= .+|-+..++.++..-+...... -++|-...---|+++ .|...++..|...|-+..+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
No 372
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=66.93 E-value=1.8e+02 Score=30.99 Aligned_cols=67 Identities=9% Similarity=-0.084 Sum_probs=41.8
Q ss_pred cCHHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCC-------hhHHHHHHHHHhhCCC
Q 008249 116 TDYRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGD-------LEKADHVIREMSEMRP 184 (572)
Q Consensus 116 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~~~ 184 (572)
.+...|- +|--+.|.|++++|.++..+.... .......+...+..|....+ -++...-++...+...
T Consensus 110 ~~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 110 NGDPIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp TTEEHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred CCCccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 3445675 666689999999999999555443 34555677778888866532 2345555666655444
No 373
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.66 E-value=2.2e+02 Score=31.49 Aligned_cols=116 Identities=12% Similarity=0.151 Sum_probs=66.5
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhCC---CCCChhhHHHHHHHHHHcCCh--hHHHHHHHHHhhCCCCCCHHHHHH-
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKMIQKG---TVPDVLTHNYLVNELCKIGDL--EKADHVIREMSEMRPSPNCATYNA- 193 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~- 193 (572)
-|..|+-.|...|+.++|++++.+..... ..--...+-.++..+.+.+.. +-.++.-+......+.-....+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 37788888999999999999998887632 111122333355555555544 444444444444333211111111
Q ss_pred -----------HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 008249 194 -----------FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCK 235 (572)
Q Consensus 194 -----------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 235 (572)
.+-.|+.....+-+...++.+....-.++..-.+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 223455666677777778877665555566666667666654
No 374
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.51 E-value=52 Score=26.19 Aligned_cols=43 Identities=7% Similarity=0.098 Sum_probs=21.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 457 SLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLR 499 (572)
Q Consensus 457 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 499 (572)
+-+..+...++.|++......+++|-+.+++..|.++|+-...
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3334444444555555555555555555555555555555443
No 375
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=65.09 E-value=59 Score=24.72 Aligned_cols=49 Identities=20% Similarity=0.141 Sum_probs=20.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 008249 271 YFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKR 325 (572)
Q Consensus 271 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 325 (572)
+...|++++|..+.+... .||...|-+|... +.|.-+.....+..|..+
T Consensus 49 LmNrG~Yq~Al~l~~~~~----~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKLC----YPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHccchHHHHHHhcCCCC----CchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 344444444444443331 3444444443221 334334444444444433
No 376
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=63.91 E-value=2.2e+02 Score=30.85 Aligned_cols=98 Identities=19% Similarity=0.165 Sum_probs=61.5
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---hcCCHhHHHHHHHHHHHCCCCCCHhHHHH
Q 008249 152 DVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYC---RVNELDKALHLFSTMANNGIRPNRVTHNI 228 (572)
Q Consensus 152 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 228 (572)
+...+..||..+.+.|++++....-..|.+.-| .+...|-..+.... ..+...++..+|++....-. ++..|.-
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~p-l~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~v~iw~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAP-LPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--SVPIWEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--cchHHHH
Confidence 556677788888899998877777777766555 34555555444332 34677788888888765432 3444444
Q ss_pred HHHHHHh-------CCChhHHHHHHHHHHhC
Q 008249 229 LVHALCK-------KGLLGDAVKFLGEVLAD 252 (572)
Q Consensus 229 ll~~~~~-------~g~~~~a~~~~~~~~~~ 252 (572)
.+..+.. .++++....+|.+++..
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHhh
Confidence 4444443 24566677777777654
No 377
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=63.78 E-value=3.6e+02 Score=33.33 Aligned_cols=314 Identities=11% Similarity=0.006 Sum_probs=160.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHH----HHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHH
Q 008249 193 AFITGYCRVNELDKALHLFSTM----ANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILM 268 (572)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (572)
.+..+-.+.+.+.+|...++.- ... .....-|..+...|+..+++|....+....... ++ . ..-+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~------~s--l-~~qi 1456 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD------PS--L-YQQI 1456 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC------cc--H-HHHH
Confidence 3445566778888888888873 221 112233445555888888888887776642111 22 2 2233
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHH-HHHHHHcCCH
Q 008249 269 DSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTL-LNCLCKQGKL 347 (572)
Q Consensus 269 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~ 347 (572)
-.....|++..|...|+.+.+.+ ++...+++-++......|.+..++-..+-.... ..+....++.+ +.+--+.+++
T Consensus 1457 l~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1457 LEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcch
Confidence 44567889999999999998876 455777887777777788888777765555443 23333333332 3344566777
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHH--HHHHHHHcC--CHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHhc
Q 008249 348 DEASHFYGVLSKTGVAPDQISYKT--IIQGLCIHG--DIVKAREFLLSMLEKSVV---------PEPHIWNVIIDGYGRC 414 (572)
Q Consensus 348 ~~A~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g--~~~~A~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~ 414 (572)
+.....+. .. +..+|.. +...+.+.. |.-.-.+.++.+.+.-+. .-...|..++....-.
T Consensus 1535 D~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~ 1607 (2382)
T KOG0890|consen 1535 DLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL 1607 (2382)
T ss_pred hhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH
Confidence 76666554 11 2222222 222222222 111111223322221111 1112233333332211
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHH-HHhCCCCCC-----HHHHHHHHHHHH
Q 008249 415 GDLSNAFSIRDLMLSFGVSSNVF------TFNALILAETRGGSIFDAFSLKKE-MLLDGIFPD-----VFTYNLLIGASC 482 (572)
Q Consensus 415 g~~~~A~~~~~~~~~~~~~p~~~------~~~~ll~~~~~~g~~~~a~~~~~~-m~~~~~~p~-----~~~~~~li~~~~ 482 (572)
.-.. ..+.. .+..++.. -|-.-+.--....+..+-+--+++ +......|+ ...|-...+..-
T Consensus 1608 el~~----~~~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR 1681 (2382)
T KOG0890|consen 1608 ELEN----SIEEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIAR 1681 (2382)
T ss_pred HHHH----HHHHh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH
Confidence 1111 11111 11122211 111111110000111111111111 111111222 456777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 483 NLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
++|+++.|...+-.+.+.+ . ...+--.+.-+...|+...|+.++++-.+.
T Consensus 1682 ~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1682 LAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred hcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 8999999988877776654 3 344556677788999999999999988864
No 378
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.77 E-value=21 Score=24.32 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 505 DIITYTELIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 505 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
|..-.-.++.+|...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444555666666666666666655543
No 379
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.15 E-value=36 Score=29.75 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=38.1
Q ss_pred hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 483 NLGHIHLALQLYDEMLRR-GITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
...+.+......+.+.+. ...|+..+|..++.++...|+.++|.+..+++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555444444433321 24789999999999999999999999999998886
No 380
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.10 E-value=1.3e+02 Score=27.63 Aligned_cols=212 Identities=13% Similarity=0.107 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhCCCHHHHHHHHHHHHHC-----CCCCCHhHHHHHHHHHHHc
Q 008249 273 KNGDKFQALALWNDMFQKNIQTDIVAYNVL---INGFCLNGDISSAFAYFCQMLKR-----GFLPDVITYNTLLNCLCKQ 344 (572)
Q Consensus 273 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~ 344 (572)
+..++++|+.-|.+..+........-|.+| +..+.+.|++++.++.|.++... .-.-+..+.|.+++.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Q ss_pred CCHHHHHHHHHHHHhC-----CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHh------------CCCCCCHHHHHHH
Q 008249 345 GKLDEASHFYGVLSKT-----GVAPDQISYKTIIQGLCIHGDIVKAREFLLSMLE------------KSVVPEPHIWNVI 407 (572)
Q Consensus 345 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~~~~~l 407 (572)
.+.+.-...++.-.+. +-..--.|-..+...|...+.+.+..+++.++.. +|.. =...|..-
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQ-LLEiYAlE 197 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQ-LLEIYALE 197 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccch-hhhhHhhH
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHH
Q 008249 408 IDGYGRCGDLSNAFSIRDLMLS-FGVSSNVFTFNALILA----ETRGGSIFDAFSLKKEMLLD------GIFPDVFTYNL 476 (572)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~ll~~----~~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~ 476 (572)
|..|....+-.+...++++... ...-|.+.....+-.+ ..+.|++++|..-|-+..+. .-.....-|-.
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLV 277 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLV 277 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHH
Q ss_pred HHHHHHhcC
Q 008249 477 LIGASCNLG 485 (572)
Q Consensus 477 li~~~~~~g 485 (572)
|.+.+.+.|
T Consensus 278 LANMLmkS~ 286 (440)
T KOG1464|consen 278 LANMLMKSG 286 (440)
T ss_pred HHHHHHHcC
No 381
>PRK11619 lytic murein transglycosylase; Provisional
Probab=61.81 E-value=2.3e+02 Score=30.40 Aligned_cols=118 Identities=8% Similarity=-0.073 Sum_probs=66.1
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCCH--hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008249 344 QGKLDEASHFYGVLSKTG-VAPDQ--ISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNA 420 (572)
Q Consensus 344 ~g~~~~A~~~~~~~~~~~-~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 420 (572)
..+.+.|..++....... ..+.. .++..+.......+..++|...+........ +......-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~--~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ--STSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC--CcHHHHHHHHHHHHccCHHHH
Confidence 345677888887764432 22221 2233333333333225566666665443322 333344444455578888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 421 FSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLL 464 (572)
Q Consensus 421 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 464 (572)
...+..|....- -...-.--+..++...|+.++|...|+.+..
T Consensus 332 ~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 332 NTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888887744221 1333344456666668888999888888743
No 382
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=61.55 E-value=51 Score=24.71 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=29.7
Q ss_pred HhcCCHHHHHHHHHHHHH----CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 482 CNLGHIHLALQLYDEMLR----RGITPD----IITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~----~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
.+.|++.+|.+.+.+..+ .+.... ......+.......|+.++|...+++..+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456777777555555443 221110 122233445556667777777777777765
No 383
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.32 E-value=1.9e+02 Score=29.24 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=33.4
Q ss_pred HhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChh
Q 008249 129 CLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLE 170 (572)
Q Consensus 129 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 170 (572)
...+.++...++...+...|.....+.+|.-+..|.+.|...
T Consensus 28 f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 28 FNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred cCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 445788888889999888887777777888888888887654
No 384
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=60.96 E-value=23 Score=23.24 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=9.1
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 008249 550 RYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 550 ~~~~~g~~~~A~~~~~~~l~ 569 (572)
++.+.|++++|.+..+.+++
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 44444555555544444443
No 385
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.55 E-value=66 Score=25.65 Aligned_cols=44 Identities=7% Similarity=0.152 Sum_probs=25.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 492 QLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 492 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+-+..+...++.|++.....-+++|.+-+++..|.++|+-...+
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33344444455666666666666666666666666666665543
No 386
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.54 E-value=1.3e+02 Score=27.19 Aligned_cols=117 Identities=9% Similarity=-0.044 Sum_probs=61.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHH
Q 008249 411 YGRCGDLSNAFSIRDLMLSFGVSSNV-FTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFT-YNLLIGASCNLGHIH 488 (572)
Q Consensus 411 ~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~ 488 (572)
|....+++.|..-|.+.+.. .|+. .-|+.-+.++.+..+++.+..--...++ +.||.+- .-.+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 44555667777766665553 3444 3344455566666777766665555554 3555432 223444555666777
Q ss_pred HHHHHHHHHHH----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 489 LALQLYDEMLR----RGITPDIITYTELIKGHCARGNMKEAEEVFAK 531 (572)
Q Consensus 489 ~A~~~~~~m~~----~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 531 (572)
+|+..+++... ..+++-...+..|..+=-..=...+..++.++
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 77777777643 22333334455554443333333344444443
No 387
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.85 E-value=2.3e+02 Score=29.36 Aligned_cols=157 Identities=12% Similarity=0.011 Sum_probs=89.2
Q ss_pred CChhhHHHHHHHHHhCC-----------CCCChhhHHHHHHHHHHcCChhHHHHHHHHH-------hhCCCCC-------
Q 008249 132 GKIGTALWLRRKMIQKG-----------TVPDVLTHNYLVNELCKIGDLEKADHVIREM-------SEMRPSP------- 186 (572)
Q Consensus 132 g~~~~A~~~~~~m~~~g-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~~~------- 186 (572)
..+++|...|.-....- .+-.+.+...+...+..+|+.+.|..++++. ..-...|
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 44666666666554431 1223344555666777888877766655543 2211111
Q ss_pred ------CHHHHHH---HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH-hCCChhHHHHHHHHHHhCCCCC
Q 008249 187 ------NCATYNA---FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALC-KKGLLGDAVKFLGEVLADDDGK 256 (572)
Q Consensus 187 ------~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~ 256 (572)
|...|-+ -|..+.+.|.+..|++..+.+.+....-|+.....+|+.|+ +..+++..++++++........
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 2222222 24556677888888888888877654446667777776664 5677888888887775544333
Q ss_pred CCccHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 008249 257 ATSDVITSTILMDSYFKNGD---KFQALALWNDMF 288 (572)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~ 288 (572)
.-|+..--.+++..|..... -+.|+..+.+..
T Consensus 412 ~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 412 QLPNFGYSLALARFFLRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred hcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 33554444555555655544 334444444444
No 388
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=57.49 E-value=1.1e+02 Score=25.28 Aligned_cols=80 Identities=13% Similarity=0.215 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhhCCC-----CCCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 008249 157 NYLVNELCKIGDLEKADHVIREMSEMRP-----SPNCATYNAFITGYCRVNE-LDKALHLFSTMANNGIRPNRVTHNILV 230 (572)
Q Consensus 157 ~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll 230 (572)
|.++.-....+++.-...+++.+.-..+ ..+...|..++.+.....- --.+..+|.-|++.+.++++.-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4455555555555555555555422111 1344567777777755554 445677777787777777888888888
Q ss_pred HHHHhC
Q 008249 231 HALCKK 236 (572)
Q Consensus 231 ~~~~~~ 236 (572)
.++.+-
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 776543
No 389
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=56.89 E-value=2.2e+02 Score=28.63 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=72.0
Q ss_pred cCChhHHH-HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHH
Q 008249 166 IGDLEKAD-HVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVK 244 (572)
Q Consensus 166 ~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 244 (572)
.|+.-.|- +++..+......|+.....+. .....|+++.+.+.+...... +.....+...+++...+.|++++|..
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34544443 344444433333544443333 344678888888887766543 34456677778888888888888888
Q ss_pred HHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008249 245 FLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKN 291 (572)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 291 (572)
.-+-|+.... .+......-....-..|-++++.-.|++....+
T Consensus 379 ~a~~~l~~ei----e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 379 TAEMMLSNEI----EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHhcccc----CChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 8888877655 333333333333345566788888888777654
No 390
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=56.74 E-value=32 Score=23.47 Aligned_cols=22 Identities=5% Similarity=0.090 Sum_probs=10.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 008249 546 ILKKRYRRMKESDKARDIHQKW 567 (572)
Q Consensus 546 ~l~~~~~~~g~~~~A~~~~~~~ 567 (572)
.++.+|...|++++|.++++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444555555555444444
No 391
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.30 E-value=3.1e+02 Score=30.08 Aligned_cols=172 Identities=14% Similarity=0.120 Sum_probs=83.0
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhCCCCCCh--hhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008249 124 VIRDLCLGGKIGTALWLRRKMIQKGTVPDV--LTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRV 201 (572)
Q Consensus 124 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 201 (572)
+-..|...|+++.|++..+.- |+. .++..-.+.|...+++..|-+++-++. ..+..+.--+...
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~--------~~FEEVaLKFl~~ 429 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETL--------SSFEEVALKFLEI 429 (911)
T ss_pred HHHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh--------hhHHHHHHHHHhc
Confidence 445677788888888775432 222 233344556777788888888887762 2233444444445
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHhHHHHHH-----HHHH-hCCChh----HHHHHHHHH--------HhCCCCCCCccHHH
Q 008249 202 NELDKALHLFSTMANNGIRPNRVTHNILV-----HALC-KKGLLG----DAVKFLGEV--------LADDDGKATSDVIT 263 (572)
Q Consensus 202 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-----~~~~-~~g~~~----~a~~~~~~~--------~~~~~~~~~~~~~~ 263 (572)
.+.+ ++..|-.=+-..+.|...+-..++ ..|. +.++.+ ++..-++.- ....... .+...
T Consensus 430 ~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~--~~~~n 506 (911)
T KOG2034|consen 430 NQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLH--KDELN 506 (911)
T ss_pred CCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhh--HHhhh
Confidence 5544 444432222223455444433322 2221 223222 222111111 0000000 22222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 008249 264 STILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFAYFCQ 321 (572)
Q Consensus 264 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 321 (572)
+.+........|+.++...+-.-|. -|..++..+++.+.+++|++++..
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344455566665555444443 255666667777777777776654
No 392
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=55.28 E-value=2e+02 Score=27.57 Aligned_cols=83 Identities=13% Similarity=0.231 Sum_probs=50.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHH-HHH
Q 008249 442 LILAETRGGSIFDAFSLKKEMLLD---GIFPDVFTYN--LLIGASCNLGHIHLALQLYDEMLR-----RGITPDII-TYT 510 (572)
Q Consensus 442 ll~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~-~~~ 510 (572)
++...-+.++.++|.++++++.+. .-.|+.+.|. .....+...|+.+++.+++++..+ -|++|++. .|.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 344445556788888888877643 2345665553 344556677888888888877776 46666553 355
Q ss_pred HHHHHHH-hcCCHHH
Q 008249 511 ELIKGHC-ARGNMKE 524 (572)
Q Consensus 511 ~l~~~~~-~~g~~~~ 524 (572)
.+-.-|. ..|++..
T Consensus 161 ~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHHHhHHH
Confidence 5554443 3445543
No 393
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=55.02 E-value=1.9e+02 Score=27.44 Aligned_cols=15 Identities=13% Similarity=0.293 Sum_probs=8.1
Q ss_pred cCCHHHHHHHHHHHH
Q 008249 379 HGDIVKAREFLLSML 393 (572)
Q Consensus 379 ~g~~~~A~~~~~~~~ 393 (572)
..++.+|-.+|-+..
T Consensus 194 vR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 194 VRNFKEAADLFLDSV 208 (393)
T ss_pred HHhHHHHHHHHHHHc
Confidence 345556655555544
No 394
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.80 E-value=69 Score=27.98 Aligned_cols=53 Identities=17% Similarity=-0.159 Sum_probs=36.1
Q ss_pred hcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008249 448 RGGSIFDAFSLKKEMLLD-GIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRR 500 (572)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 500 (572)
...+.+......+.+.+. ...|+...|..++..+...|+.++|.+..+++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444444333333221 24688888888888888999999998888888764
No 395
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.43 E-value=54 Score=20.94 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=15.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChHHHHHH
Q 008249 518 ARGNMKEAEEVFAKIQTLGLAIDHIPFRIL 547 (572)
Q Consensus 518 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 547 (572)
+.|-..++..++++|.+.|+..+...+..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 444445555555555555555555444443
No 396
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=53.98 E-value=15 Score=29.47 Aligned_cols=32 Identities=31% Similarity=0.345 Sum_probs=19.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 008249 517 CARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKR 550 (572)
Q Consensus 517 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 550 (572)
...|.-..|-.+|++|++.|-+||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3445556677777777777766665 5555543
No 397
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=53.92 E-value=1.6e+02 Score=26.76 Aligned_cols=48 Identities=19% Similarity=0.126 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHH---CCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHH
Q 008249 487 IHLALQLYDEMLR---RGITPDIITYTELIK-----GHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 487 ~~~A~~~~~~m~~---~g~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~m~~ 534 (572)
.+.|.+.|+++.+ ..++|...++..|+- -|-..|+.++|.++.++...
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3556666666553 225677666544443 33468999999988877654
No 398
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=53.80 E-value=1.3e+02 Score=29.78 Aligned_cols=57 Identities=11% Similarity=0.033 Sum_probs=42.0
Q ss_pred HHHHHhCCChhhHHHHHHHHHhCCCCCChh--hHHHHHHHHHHc--CChhHHHHHHHHHhhC
Q 008249 125 IRDLCLGGKIGTALWLRRKMIQKGTVPDVL--THNYLVNELCKI--GDLEKADHVIREMSEM 182 (572)
Q Consensus 125 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~--g~~~~A~~~~~~~~~~ 182 (572)
+..+.+.+++..|.++|+.+.++ ++++.. .+..+..+|... -++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44566889999999999999987 555554 455666666554 4677898988887653
No 399
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.71 E-value=56 Score=20.87 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=20.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008249 482 CNLGHIHLALQLYDEMLRRGITPDIITYTELIK 514 (572)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 514 (572)
.+.|-+.++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355666667777777776676666666655543
No 400
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=52.26 E-value=2.1e+02 Score=26.89 Aligned_cols=123 Identities=20% Similarity=0.110 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 008249 416 DLSNAFSIRDLMLSFGVSSNVFTFNALILAETRG-------GSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCN----L 484 (572)
Q Consensus 416 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~ 484 (572)
+..+|...++...+.|..+...+...+...|... -+...|...+.++...+ +......|...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 5555555555555555432212222222222221 12235666666666654 33333333333322 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHcCCCCChHHHH
Q 008249 485 GHIHLALQLYDEMLRRGITPDIITYTELIKGHCARG---------------NMKEAEEVFAKIQTLGLAIDHIPFR 545 (572)
Q Consensus 485 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m~~~g~~p~~~~~~ 545 (572)
.+.++|...|....+.|. ......+. .+...| +...|...+......|.........
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 467777777777777663 22222222 333333 5666666666666665444444433
No 401
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=51.93 E-value=66 Score=21.13 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=14.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChH
Q 008249 512 LIKGHCARGNMKEAEEVFAKIQTLGLAIDHI 542 (572)
Q Consensus 512 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 542 (572)
+.-++.+.|++++|.+..+.+.+. .|+..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcH
Confidence 344555666666666666666554 44443
No 402
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=51.90 E-value=2.1e+02 Score=26.93 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 008249 471 VFTYNLLIGASCNLGHIHLA 490 (572)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A 490 (572)
..+|..|+.++|..|+.+-.
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 33566666666666665543
No 403
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=51.83 E-value=2.1e+02 Score=26.84 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=9.5
Q ss_pred hcCCHhHHHHHHHHHHH
Q 008249 200 RVNELDKALHLFSTMAN 216 (572)
Q Consensus 200 ~~g~~~~A~~~~~~m~~ 216 (572)
..+.+..+...+.....
T Consensus 53 ~~~~~~~a~~~~~~a~~ 69 (292)
T COG0790 53 YPPDYAKALKSYEKAAE 69 (292)
T ss_pred ccccHHHHHHHHHHhhh
Confidence 34555666666655554
No 404
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=51.51 E-value=2.1e+02 Score=26.89 Aligned_cols=161 Identities=17% Similarity=0.208 Sum_probs=78.6
Q ss_pred CChhhHHHHH-HHHHHcCC-hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHH
Q 008249 151 PDVLTHNYLV-NELCKIGD-LEKADHVIREMSEMRPSPNCATYNAFITGYCRVNELDKALHLFSTMANNGIRPNRVTHNI 228 (572)
Q Consensus 151 ~~~~~~~~li-~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 228 (572)
|+...++.|. +.+.+.|- ..-|.++|..... ....+.++..+-+.+.-+.-.++ ++|+..+-..
T Consensus 163 ~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~------Ek~i~~lis~Lrkg~md~rLmef--------fPpnkrs~E~ 228 (412)
T KOG2297|consen 163 LPATVLQSLLNDNLVKEGIALSFAVKLFKEWLV------EKDINDLISSLRKGKMDDRLMEF--------FPPNKRSVEH 228 (412)
T ss_pred CCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHh------hccHHHHHHHHHhcChHhHHHHh--------cCCcchhHHH
Confidence 3444444444 34555553 2446666766543 22345666666444433333333 4677666665
Q ss_pred HHHHHHhCCC-----------hhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCH
Q 008249 229 LVHALCKKGL-----------LGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALW-NDMFQKNIQTDI 296 (572)
Q Consensus 229 ll~~~~~~g~-----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~ 296 (572)
....+...|- ...+.+-++. .|..-..+...+++..... ++|.+.++ |++
T Consensus 229 Fak~Ft~agL~elvey~~~q~~~~a~kElq~-----------------~L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~ 290 (412)
T KOG2297|consen 229 FAKYFTDAGLKELVEYHRNQQSEGARKELQK-----------------ELQEQVSEEDPVKEVILYVKEEMKRNNL-PET 290 (412)
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHhccCCCHHHHHHHHHHHHHhcCC-CCc
Confidence 5555554442 2222222222 2222233334445544443 45555553 444
Q ss_pred ----HHHHHHHHHHHhCCCHH-HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 008249 297 ----VAYNVLINGFCLNGDIS-SAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASH 352 (572)
Q Consensus 297 ----~~~~~li~~~~~~g~~~-~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 352 (572)
..|..++++---+.+-+ -|.+.++. ..+|..|+.+++..|+.+..+-
T Consensus 291 eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~g~sEL~Ll 342 (412)
T KOG2297|consen 291 EVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQGQSELELL 342 (412)
T ss_pred eEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCChHHHHHH
Confidence 35666666543332211 12233322 3457888999999998776543
No 405
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=51.32 E-value=3.2e+02 Score=28.84 Aligned_cols=26 Identities=27% Similarity=0.157 Sum_probs=18.0
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHH
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRK 143 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~ 143 (572)
++.=|+ .+..+.-.|.++.|.+++..
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 356676 67778888999999888843
No 406
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=50.89 E-value=1.9e+02 Score=25.99 Aligned_cols=99 Identities=18% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008249 466 GIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITP-----DIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID 540 (572)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 540 (572)
.+.+...-+|.|+--|.-...+.+|...|.. +.|+.| +..--..-|+.....|++++|++.+....-.-+..|
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Q ss_pred hHHHHHHHHH----HHhcCCHHHHHHHHHH
Q 008249 541 HIPFRILKKR----YRRMKESDKARDIHQK 566 (572)
Q Consensus 541 ~~~~~~l~~~----~~~~g~~~~A~~~~~~ 566 (572)
...+-.|..- +.+.|..++|.++.+.
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 407
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.69 E-value=93 Score=23.27 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=13.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHh
Q 008249 229 LVHALCKKGLLGDAVKFLGEVLA 251 (572)
Q Consensus 229 ll~~~~~~g~~~~a~~~~~~~~~ 251 (572)
+.......|++++|.+.+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444555666666666666554
No 408
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=50.64 E-value=1.1e+02 Score=26.43 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhhCCCCCCH--H-----HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 008249 169 LEKADHVIREMSEMRPSPNC--A-----TYNAFITGYCRVNELDKALHLFSTMAN 216 (572)
Q Consensus 169 ~~~A~~~~~~~~~~~~~~~~--~-----~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (572)
.+.|+.+++.+.+..+.|.. . .-...+..|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 34556666655554433211 0 112234456677777777777777664
No 409
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.27 E-value=33 Score=32.03 Aligned_cols=35 Identities=34% Similarity=0.400 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 008249 474 YNLLIGASCNLGHIHLALQLYDEMLRRGITPDIIT 508 (572)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 508 (572)
|+..|....+.||+++|+.+++++.+.|+.--..+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 34666666666666666666666666664433333
No 410
>PRK10941 hypothetical protein; Provisional
Probab=50.11 E-value=2.2e+02 Score=26.55 Aligned_cols=60 Identities=13% Similarity=-0.017 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 475 NLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 475 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
+.+-.+|.+.++++.|+++.+.+.... +.+..-+.--.-.|.+.|.+..|..=++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 445556667777777777777776642 334444555555666777777777766666654
No 411
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=50.08 E-value=1.1e+02 Score=25.35 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=26.0
Q ss_pred HHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008249 143 KMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCR 200 (572)
Q Consensus 143 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 200 (572)
.+.+.|.++++. -..++..+...++.-.|.++++++.+.+|..+..|-...+..+..
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e 67 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEE 67 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHH
Confidence 334444443332 233444555554555555555555555554444433333333333
No 412
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.31 E-value=3.2e+02 Score=28.32 Aligned_cols=134 Identities=17% Similarity=0.091 Sum_probs=87.4
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHH-------HhCCCCC-------------ChhhHHH---HHHHHHHcCChhHHHHHH
Q 008249 120 RHVAVIRDLCLGGKIGTALWLRRKM-------IQKGTVP-------------DVLTHNY---LVNELCKIGDLEKADHVI 176 (572)
Q Consensus 120 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~g~~~-------------~~~~~~~---li~~~~~~g~~~~A~~~~ 176 (572)
+.-.+..++..+|+.+.|..+.++. ..-.+.| |..-|.+ -+..+.+.|.+..|.+..
T Consensus 286 sLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~c 365 (665)
T KOG2422|consen 286 SLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWC 365 (665)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 4455556777888877666655543 3222222 2222333 345677889999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHH-hcCCHhHHHHHHHHHHHCC---CCCCHhHHHHHHHHHHhCCC---hhHHHHHHHHH
Q 008249 177 REMSEMRPSPNCATYNAFITGYC-RVNELDKALHLFSTMANNG---IRPNRVTHNILVHALCKKGL---LGDAVKFLGEV 249 (572)
Q Consensus 177 ~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~ 249 (572)
+-+....|.-|+...-.+|..|+ +..+++-.+++++.....+ .-||-.--..+...|..... .+.|...+.++
T Consensus 366 KlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qA 445 (665)
T KOG2422|consen 366 KLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQA 445 (665)
T ss_pred HHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHH
Confidence 99999888778888888888776 5678888888888775433 34554444445566665554 45677777777
Q ss_pred HhCC
Q 008249 250 LADD 253 (572)
Q Consensus 250 ~~~~ 253 (572)
+...
T Consensus 446 l~~~ 449 (665)
T KOG2422|consen 446 LKHH 449 (665)
T ss_pred HHhC
Confidence 6644
No 413
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.07 E-value=2.4e+02 Score=27.89 Aligned_cols=56 Identities=13% Similarity=-0.002 Sum_probs=36.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHhC
Q 008249 409 DGYGRCGDLSNAFSIRDLMLSFGVSSNVF--TFNALILAET--RGGSIFDAFSLKKEMLLD 465 (572)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~ll~~~~--~~g~~~~a~~~~~~m~~~ 465 (572)
..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445778888888888888776 444443 3444444443 456777888888776654
No 414
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=48.76 E-value=3.1e+02 Score=27.86 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=29.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008249 480 ASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCA 518 (572)
Q Consensus 480 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 518 (572)
.|...|++-.|.+.|.+.... +..++..|..|..+|..
T Consensus 344 ~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 344 LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 466788888888888888764 56788888888888864
No 415
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.03 E-value=1.3e+02 Score=23.36 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhh
Q 008249 156 HNYLVNELCKIGDLEKADHVIREMSE 181 (572)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~ 181 (572)
|..|+..|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555555555555555555544
No 416
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.32 E-value=4.5e+02 Score=29.99 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 226 HNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALW 284 (572)
Q Consensus 226 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 284 (572)
|..+++.+-+.+-.+.+.++-..+++.-+..-|.-..+++.+.+.....|.+.+|...+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 45556666666666666666666655433222233445566666666666666665544
No 417
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=47.23 E-value=2.4e+02 Score=26.15 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=16.9
Q ss_pred CHhHHHHHHHHHHhCCChhHHHHHH
Q 008249 222 NRVTHNILVHALCKKGLLGDAVKFL 246 (572)
Q Consensus 222 ~~~~~~~ll~~~~~~g~~~~a~~~~ 246 (572)
++.....+...|.+.|++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5566667777778888887777666
No 418
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.11 E-value=2.9e+02 Score=27.21 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHhHHHHHHH
Q 008249 310 GDISSAFAYFCQMLKR-----GFLPDVITYNTLLN 339 (572)
Q Consensus 310 g~~~~a~~~~~~m~~~-----g~~p~~~~~~~ll~ 339 (572)
+++...+++++++... -+.|.+.+.-.+|+
T Consensus 318 sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 318 SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 4566666666665543 23455555544443
No 419
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.53 E-value=26 Score=33.21 Aligned_cols=90 Identities=11% Similarity=-0.047 Sum_probs=39.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 008249 413 RCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPD-VFTYNLLIGASCNLGHIHLAL 491 (572)
Q Consensus 413 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 491 (572)
..|.++.|++.|...+..++ +....|..-.+++.+.+++..|++=+....+. .|| ..-|-.-..+..-.|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 34555555555555544322 23334444444455555555555544444432 222 112222222223345555555
Q ss_pred HHHHHHHHCCCCCC
Q 008249 492 QLYDEMLRRGITPD 505 (572)
Q Consensus 492 ~~~~~m~~~g~~p~ 505 (572)
..+....+.++.+.
T Consensus 203 ~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 203 HDLALACKLDYDEA 216 (377)
T ss_pred HHHHHHHhccccHH
Confidence 55555555443333
No 420
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=46.27 E-value=2.3e+02 Score=25.73 Aligned_cols=55 Identities=11% Similarity=-0.084 Sum_probs=22.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 229 LVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDM 287 (572)
Q Consensus 229 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 287 (572)
-+-++.+..+++.+..--...++..+ ..+.....+..+......+++|+..+.+.
T Consensus 50 ralchlk~~~~~~v~~dcrralql~~----N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 50 RALCHLKLKHWEPVEEDCRRALQLDP----NLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHhcCh----HHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 33344444444444444444443322 22333333334444444444444444444
No 421
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=44.68 E-value=2.7e+02 Score=26.05 Aligned_cols=99 Identities=8% Similarity=0.092 Sum_probs=54.5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--
Q 008249 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQK----NIQTDIVAYNV-LINGFCLNGDISSAFAYFCQMLKRGFLPDV-- 331 (572)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-- 331 (572)
.-..++..+...|++.++.+.+.+...+..+. |.+.|+...-+ |.-.|....-+++-++..+.|.+.|..-+.
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 34567777888888888888887776665543 44444432222 122233333456677777777777654332
Q ss_pred --hHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008249 332 --ITYNTLLNCLCKQGKLDEASHFYGVLSK 359 (572)
Q Consensus 332 --~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 359 (572)
.+|.-+- +....++.+|-.++.+...
T Consensus 193 RyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 193 RYKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred hHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 2232222 1223456666666665544
No 422
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=44.19 E-value=54 Score=17.92 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=6.8
Q ss_pred ChhHHHHHHHHHHh
Q 008249 238 LLGDAVKFLGEVLA 251 (572)
Q Consensus 238 ~~~~a~~~~~~~~~ 251 (572)
+.+.+..+|+.++.
T Consensus 2 ~~~~~r~i~e~~l~ 15 (33)
T smart00386 2 DIERARKIYERALE 15 (33)
T ss_pred cHHHHHHHHHHHHH
Confidence 34445555555544
No 423
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.12 E-value=59 Score=30.41 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=35.7
Q ss_pred CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHHH
Q 008249 502 ITPDIIT-YTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRI 546 (572)
Q Consensus 502 ~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 546 (572)
+.||..+ |+.-|..-.+.||+++|+.+++++.+.|+.--..+|-.
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 4466654 57999999999999999999999999997754445443
No 424
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=43.72 E-value=3.4e+02 Score=26.98 Aligned_cols=88 Identities=18% Similarity=0.213 Sum_probs=58.7
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--------HhcCCHHHHHHHHHHHHHc
Q 008249 464 LDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGH--------CARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 464 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~--------~~~g~~~~A~~~~~~m~~~ 535 (572)
...+.||..+.|.+...+...-..+-...+|+-..+.+ .|-...+.++|-.- .+...-++++++++.|...
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~ 254 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ 254 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh
Confidence 44688999999999888888888888999999888875 44444443333211 2345678899999988764
Q ss_pred CCCCChHHHHHHHHHHH
Q 008249 536 GLAIDHIPFRILKKRYR 552 (572)
Q Consensus 536 g~~p~~~~~~~l~~~~~ 552 (572)
=--.|..-+-+|...|+
T Consensus 255 L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 255 LSVEDVPDFFSLAQYYS 271 (669)
T ss_pred cccccchhHHHHHHHHh
Confidence 11224445555655554
No 425
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=43.56 E-value=51 Score=29.42 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=41.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 480 ASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 480 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
...+.++.+.|.+++.+..+. .+-....|..+...-.+.|+++.|.+.|++..+.
T Consensus 4 ~~~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 345677888888888888764 2445577777887778888888888888888876
No 426
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=43.46 E-value=2.7e+02 Score=25.76 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=17.6
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 259 SDVITSTILMDSYFKNGDKFQALALW 284 (572)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~A~~~~ 284 (572)
.++.....+...|.+.|++.+|...|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 56777778888888888887777655
No 427
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=43.40 E-value=1.6e+02 Score=30.97 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=53.1
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhC--CCCCChhhHHHHHHHHHHcCChh------HHHHHHHHHhhCCCCCCHHHHHHH
Q 008249 123 AVIRDLCLGGKIGTALWLRRKMIQK--GTVPDVLTHNYLVNELCKIGDLE------KADHVIREMSEMRPSPNCATYNAF 194 (572)
Q Consensus 123 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l 194 (572)
+|+.+|..+|++-.+.++++..... |-..=...+|..|+.+.+.|.++ .|.++++... ..-|.-||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7999999999999999999998875 22233456788888888888775 3444444443 34566777777
Q ss_pred HHHHHh
Q 008249 195 ITGYCR 200 (572)
Q Consensus 195 i~~~~~ 200 (572)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665444
No 428
>PRK10941 hypothetical protein; Provisional
Probab=43.01 E-value=2.8e+02 Score=25.82 Aligned_cols=59 Identities=7% Similarity=-0.082 Sum_probs=28.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 008249 194 FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADD 253 (572)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 253 (572)
+-.+|.+.++++.|+.+.+.+.... +.++.-+.--.-.|.+.|.+..|..=++..++.-
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 3344455555555555555555432 1123333334444555555555555555555443
No 429
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=42.88 E-value=2.3e+02 Score=24.72 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=31.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCC--------------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008249 371 TIIQGLCIHGDIVKAREFLLSMLEKSVV--------------PEPHIWNVIIDGYGRCGDLSNAFSIRD 425 (572)
Q Consensus 371 ~li~~~~~~g~~~~A~~~~~~~~~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~ 425 (572)
+++..|-+..+|.+..++++.|.+..+. +.-...|.....+.+.|..|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 3455566666777777777776654322 122234555555566666666666555
No 430
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=42.81 E-value=1.9e+02 Score=23.86 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008249 438 TFNALILAETRGGS-IFDAFSLKKEMLLDGIFPDVFTYNLLIGASC 482 (572)
Q Consensus 438 ~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 482 (572)
.|..++.+..+... --.+..+|.-+.+.+.+++..-|..++.++.
T Consensus 81 sf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l 126 (145)
T PF13762_consen 81 SFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAAL 126 (145)
T ss_pred hHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34444444433332 2233344444444444444444444444443
No 431
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=42.15 E-value=1.5e+02 Score=24.46 Aligned_cols=60 Identities=10% Similarity=0.027 Sum_probs=29.0
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008249 390 LSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGG 450 (572)
Q Consensus 390 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 450 (572)
..+.+.|.++++. -..++..+...++.-.|..+++.+.+.++..+..|.-.-+..+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344445544332 33445555555555666666666666555544444333334444333
No 432
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=42.10 E-value=3.6e+02 Score=26.82 Aligned_cols=87 Identities=14% Similarity=0.095 Sum_probs=46.3
Q ss_pred CCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHH--------HHhcCCHHHHHHHHHHHH
Q 008249 217 NGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDS--------YFKNGDKFQALALWNDMF 288 (572)
Q Consensus 217 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~ 288 (572)
..+.||..+.+-+...++..-..+-...+++-.++++. |-...+-+++-. -.+...-+++++.++.|.
T Consensus 177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaD----PF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp 252 (669)
T KOG3636|consen 177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQAD----PFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMP 252 (669)
T ss_pred cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC----ceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCc
Confidence 34677777777766666666666666677776666553 333333332211 122334566777777665
Q ss_pred hCCCCCCHHHHHHHHHHHH
Q 008249 289 QKNIQTDIVAYNVLINGFC 307 (572)
Q Consensus 289 ~~~~~~~~~~~~~li~~~~ 307 (572)
..--..|+.-+-.|...|+
T Consensus 253 ~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 253 AQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred hhcccccchhHHHHHHHHh
Confidence 4321234444444444443
No 433
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=41.96 E-value=2.1e+02 Score=30.15 Aligned_cols=90 Identities=10% Similarity=0.227 Sum_probs=55.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHhCCChh------HHHHHHHHHHhCCCCCCCccHHHH
Q 008249 193 AFITGYCRVNELDKALHLFSTMANNG--IRPNRVTHNILVHALCKKGLLG------DAVKFLGEVLADDDGKATSDVITS 264 (572)
Q Consensus 193 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~~ 264 (572)
+|+.+|..+|++..+.++++.+.... -+.-...++..++-..+.|.++ .|.+.++...- . .|..||
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~l----n--~d~~t~ 106 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARL----N--GDSLTY 106 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc----C--CcchHH
Confidence 78888888999999988888887542 2223456777777788888654 23344433321 2 567777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 265 TILMDSYFKNGDKFQALALWNDMF 288 (572)
Q Consensus 265 ~~l~~~~~~~g~~~~A~~~~~~~~ 288 (572)
..|+.+-...-+-.-.+-++.+..
T Consensus 107 all~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 107 ALLCQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHHHHhhcChHhHHhccHHHHHHH
Confidence 777766554333333334444444
No 434
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=41.41 E-value=1.9e+02 Score=24.58 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=19.9
Q ss_pred ceecc--cCCCCchHHHHHHHHhHhHHHHHHhHHHhh
Q 008249 3 LFIAC--GESSSPVHIQILRFLYQTFDSIKLNVARIF 37 (572)
Q Consensus 3 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (572)
||||| .|.++++-++++| ..++.+...++
T Consensus 7 lLIsCL~~q~~k~s~~KiL~------~iVs~Va~~v~ 37 (174)
T PF04510_consen 7 LLISCLTMQETKESDFKILR------RIVSHVAYEVF 37 (174)
T ss_pred HHHHHHHhhcccHhHHHHHH------HHHHHHHHHHH
Confidence 78998 5677788899988 34444444443
No 435
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=41.11 E-value=1.5e+02 Score=22.00 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008249 380 GDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGD 416 (572)
Q Consensus 380 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 416 (572)
|+.+.|.+++..+. +|. ..|..+++++...|.
T Consensus 50 g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~ 81 (88)
T cd08819 50 GNESGARELLKRIV-QKE----GWFSKFLQALRETEH 81 (88)
T ss_pred CcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCc
Confidence 44444444444444 322 134444444444444
No 436
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=40.23 E-value=70 Score=18.47 Aligned_cols=22 Identities=14% Similarity=0.495 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH
Q 008249 487 IHLALQLYDEMLRRGITPDIITYT 510 (572)
Q Consensus 487 ~~~A~~~~~~m~~~g~~p~~~~~~ 510 (572)
++.|..+|++.+. +.|++.+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 3444444444444 234444443
No 437
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.21 E-value=3.8e+02 Score=26.51 Aligned_cols=62 Identities=11% Similarity=0.050 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 008249 155 THNYLVNELCKIGDLEKADHVIREMSEMRP--SPNCATYNAFITGYCRVNELDKALHLFSTMAN 216 (572)
Q Consensus 155 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (572)
.+.-+.+.|...|+++.|++.+-+.++.-. +..+..|-.+|..-...|+|........+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 345566666667777777776666443211 12334455555555556666665555555543
No 438
>PRK09857 putative transposase; Provisional
Probab=39.99 E-value=2.3e+02 Score=26.80 Aligned_cols=66 Identities=11% Similarity=0.061 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008249 474 YNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID 540 (572)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 540 (572)
+..+++.....++.++-.++++.+.+. .++......+++.-+...|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 334444445566666666666666554 333444455666667777777778888888888876654
No 439
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.94 E-value=1.8e+02 Score=22.61 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 264 STILMDSYFKNGDKFQALALWNDMFQ 289 (572)
Q Consensus 264 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 289 (572)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55666666666666666666666654
No 440
>PRK13342 recombination factor protein RarA; Reviewed
Probab=38.82 E-value=4.2e+02 Score=26.58 Aligned_cols=34 Identities=29% Similarity=0.157 Sum_probs=19.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008249 449 GGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASC 482 (572)
Q Consensus 449 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 482 (572)
..+.+.|+..+..|.+.|..|....-..++.++-
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~e 276 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASE 276 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3566667777777776666665544444444433
No 441
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=38.68 E-value=2.1e+02 Score=22.98 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008249 241 DAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWND 286 (572)
Q Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 286 (572)
.+.++|..|...+.+. .-...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~--~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGT--KLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTST--TBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccH--HHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6666666666655544 5566666666666666666666666654
No 442
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=38.58 E-value=69 Score=31.98 Aligned_cols=100 Identities=17% Similarity=0.093 Sum_probs=44.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCH
Q 008249 410 GYGRCGDLSNAFSIRDLMLSFGVSSNVFT-FNALILAETRGGSIFDAFSLKKEMLLDGIFPD-VFTYNLLIGASCNLGHI 487 (572)
Q Consensus 410 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~ 487 (572)
.....+.++.|..++.++.+. .||... |..-..++.+.+++..|+.=+..+++.. |+ ...|--=..++.+.+.+
T Consensus 13 ~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHH
Confidence 334455566666666655553 233222 2222245555555555555554444432 22 12222222333344445
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008249 488 HLALQLYDEMLRRGITPDIITYTELIKG 515 (572)
Q Consensus 488 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 515 (572)
.+|...|+.... +.|+..-....+.-
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHH
Confidence 555555555443 34554444444433
No 443
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=37.81 E-value=1.7e+02 Score=21.78 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=14.9
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 259 SDVITSTILMDSYFKNGDKFQALALWNDMFQK 290 (572)
Q Consensus 259 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 290 (572)
.|...-..+...+...|++++|++.+-++.+.
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44444444555555555555555555554443
No 444
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=37.51 E-value=2.2e+02 Score=22.89 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHH
Q 008249 524 EAEEVFAKIQTLGLAIDHI-PFRILKKRYRRMKESDKARDIHQ 565 (572)
Q Consensus 524 ~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~ 565 (572)
+..++|..|.+.|+-.... .|......+...|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566777777776555433 35566666677777777777765
No 445
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=37.21 E-value=2.5e+02 Score=24.36 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=11.2
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 008249 445 AETRGGSIFDAFSLKKEMLL 464 (572)
Q Consensus 445 ~~~~~g~~~~a~~~~~~m~~ 464 (572)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 35555555555555555554
No 446
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.06 E-value=2.1e+02 Score=26.14 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 511 ELIKGHCARGNMKEAEEVFAKIQTL----GL-AIDHIPFRILKKRYRRMKESDKARDIHQKWL 568 (572)
Q Consensus 511 ~l~~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 568 (572)
.+..-|.+.|++++|.++|+.+... |. .+...+...+..++.+.|+.++...+.=+++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4555666666777776666666422 11 1123334455566666677666666554443
No 447
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.05 E-value=2.1e+02 Score=26.23 Aligned_cols=57 Identities=14% Similarity=0.038 Sum_probs=29.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHh----CCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008249 229 LVHALCKKGLLGDAVKFLGEVLA----DDDGKATSDVITSTILMDSYFKNGDKFQALALWNDM 287 (572)
Q Consensus 229 ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 287 (572)
+..-|.+.|++++|.++|+.+.. .+... ....+...+..++.+.|+.+..+.+--++
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~--l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWS--LLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44555555555555555555532 22212 44455555666666666666555544333
No 448
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=36.95 E-value=2.9e+02 Score=24.16 Aligned_cols=61 Identities=11% Similarity=0.084 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHH-HHHhCC--CHHHHHHHHHHHHHC
Q 008249 265 TILMDSYFKNGDKFQALALWNDMFQK--NIQTDIVAYNVLIN-GFCLNG--DISSAFAYFCQMLKR 325 (572)
Q Consensus 265 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~-~~~~~g--~~~~a~~~~~~m~~~ 325 (572)
...+-.....|++++|.+-++++.+. .+..-...|..+.. +++..+ .+-+|.-++.-....
T Consensus 33 s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 33 SGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 33344445667777777666665432 11111223333333 444443 344555555554443
No 449
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=36.41 E-value=67 Score=22.22 Aligned_cols=47 Identities=19% Similarity=0.194 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008249 470 DVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHC 517 (572)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 517 (572)
....++-++..+++..-+++++..+.++.+.| ..+..+|.--++.++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 33344444444444444555555555555444 233444444444333
No 450
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=35.77 E-value=7e+02 Score=28.31 Aligned_cols=200 Identities=16% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHhc-CCHhHHHHHHHHHHHCCCCCCHhHHHH-----
Q 008249 158 YLVNELCKIGDLEKADHVIREMSEMR---PSPNCATYNAFITGYCRV-NELDKALHLFSTMANNGIRPNRVTHNI----- 228 (572)
Q Consensus 158 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~----- 228 (572)
..+.-+...+++.+|..+.++-+=.- ..-+...|-.=+..+.++ ++.+---.++..+.+.++.-+.+.-..
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~~~~~~~~~ 778 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYKDTYPPSSE 778 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccccccccccccccc
Q ss_pred -----HHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008249 229 -----LVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNG--DKFQALALWNDMFQKNIQTDIVAYNV 301 (572)
Q Consensus 229 -----ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~ 301 (572)
-.......++++...+.+.+.+.... ....-...++.+|.+.+ ++++|+....++.+.
T Consensus 779 ~~~~~~~~~~~~~~KVn~ICdair~~l~~~~----~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----------- 843 (928)
T PF04762_consen 779 AQPNSNSSTASSESKVNKICDAIRKALEKPK----DKDKYLQPILTAYVKKSPPDLEEALQLIKELREE----------- 843 (928)
T ss_pred cccccccCCCccccHHHHHHHHHHHHhcccc----cchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc-----------
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH-----
Q 008249 302 LINGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLCKQGKLDEASHFYGVLSKTGVAPDQISYKTIIQGL----- 376 (572)
Q Consensus 302 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----- 376 (572)
.....++|++.+--+.. .+.|-+.....=+++-|..+-++-.+ |+.-|-.+++-+
T Consensus 844 ------~~~~ae~alkyl~fLvD---------vn~Ly~~ALG~YDl~Lal~VAq~SQk-----DPKEYLPfL~~L~~l~~ 903 (928)
T PF04762_consen 844 ------DPESAEEALKYLCFLVD---------VNKLYDVALGTYDLELALMVAQQSQK-----DPKEYLPFLQELQKLPP 903 (928)
T ss_pred ------ChHHHHHHHhHheeecc---------HHHHHHHHhhhcCHHHHHHHHHHhcc-----ChHHHHHHHHHHHhCCh
Q ss_pred --------HHcCCHHHHHHHHHHH
Q 008249 377 --------CIHGDIVKAREFLLSM 392 (572)
Q Consensus 377 --------~~~g~~~~A~~~~~~~ 392 (572)
...+++++|++.+.++
T Consensus 904 ~~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 904 LYRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred hheeeeHhhhhCCHHHHHHHHHhh
No 451
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.70 E-value=2.8e+02 Score=24.20 Aligned_cols=30 Identities=17% Similarity=-0.037 Sum_probs=19.0
Q ss_pred CHHhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 008249 117 DYRRHVAVIRDLCLGGKIGTALWLRRKMIQ 146 (572)
Q Consensus 117 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 146 (572)
+..-+..-.-.....|++++|..-++++.+
T Consensus 28 ei~r~s~~aI~~~H~~~~eeA~~~l~~a~~ 57 (204)
T COG2178 28 EIVRLSGEAIFLLHRGDFEEAEKKLKKASE 57 (204)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444455555556677778877777766544
No 452
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.67 E-value=31 Score=27.80 Aligned_cols=33 Identities=33% Similarity=0.415 Sum_probs=24.1
Q ss_pred HHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHH
Q 008249 128 LCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNE 162 (572)
Q Consensus 128 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 162 (572)
+...|.-.+|..+|..|+++|.+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34446777899999999999987764 5555543
No 453
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=35.62 E-value=2.1e+02 Score=22.21 Aligned_cols=8 Identities=25% Similarity=0.426 Sum_probs=2.7
Q ss_pred hCCChhHH
Q 008249 235 KKGLLGDA 242 (572)
Q Consensus 235 ~~g~~~~a 242 (572)
..|++++|
T Consensus 52 NrG~Yq~A 59 (116)
T PF09477_consen 52 NRGDYQEA 59 (116)
T ss_dssp HTT-HHHH
T ss_pred hhHHHHHH
Confidence 33333333
No 454
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.56 E-value=26 Score=33.17 Aligned_cols=48 Identities=10% Similarity=0.064 Sum_probs=19.7
Q ss_pred CChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 237 GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMF 288 (572)
Q Consensus 237 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 288 (572)
|.++.|++.|...+...+ +....|..-.+.+.+.+++..|++=+....
T Consensus 128 G~~~~ai~~~t~ai~lnp----~~a~l~~kr~sv~lkl~kp~~airD~d~A~ 175 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNP----PLAILYAKRASVFLKLKKPNAAIRDCDFAI 175 (377)
T ss_pred cchhhhhcccccccccCC----chhhhcccccceeeeccCCchhhhhhhhhh
Confidence 334444444444444332 333333333444444444444444333333
No 455
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=35.49 E-value=2.2e+02 Score=26.84 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=22.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 457 SLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEML 498 (572)
Q Consensus 457 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 498 (572)
++++.+.+.++.|.-.++..+--.+.+.=.+.+.+.+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344555555555555555555444555555555555555554
No 456
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.86 E-value=2.4e+02 Score=24.05 Aligned_cols=41 Identities=10% Similarity=-0.023 Sum_probs=18.1
Q ss_pred HHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008249 162 ELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN 202 (572)
Q Consensus 162 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 202 (572)
.+...++.-.|.++++.+.+.++..+..|-..-+..+...|
T Consensus 34 ~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 34 LMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33333444455555555555444444444333344444433
No 457
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.76 E-value=3.5e+02 Score=24.54 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=10.3
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 008249 412 GRCGDLSNAFSIRDLMLSF 430 (572)
Q Consensus 412 ~~~g~~~~A~~~~~~~~~~ 430 (572)
+..+++.+|+.+|++....
T Consensus 165 a~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555666666555443
No 458
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=34.49 E-value=1.9e+02 Score=21.41 Aligned_cols=65 Identities=17% Similarity=0.036 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008249 385 AREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDA 455 (572)
Q Consensus 385 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 455 (572)
+.+++..+.++|+- +......+-.+-...|+.+.|.+++..+. .|. ..|...+.++...|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhh
Confidence 34555556665543 33333333332234566677777776666 432 2455666666555554433
No 459
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.43 E-value=80 Score=21.85 Aligned_cols=28 Identities=11% Similarity=0.007 Sum_probs=11.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhhCC
Q 008249 156 HNYLVNELCKIGDLEKADHVIREMSEMR 183 (572)
Q Consensus 156 ~~~li~~~~~~g~~~~A~~~~~~~~~~~ 183 (572)
++.++..+++..-.++++..+.+....|
T Consensus 11 ~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 11 SNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333333333333334444444443333
No 460
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.03 E-value=5e+02 Score=26.04 Aligned_cols=45 Identities=22% Similarity=0.100 Sum_probs=27.0
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008249 369 YKTIIQGLCI---HGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGR 413 (572)
Q Consensus 369 ~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 413 (572)
+..++.++.+ .++.+.|+..+..|.+.|..|....-..++.++-.
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3444444444 46788888888888887766655444444444433
No 461
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=33.64 E-value=90 Score=31.23 Aligned_cols=102 Identities=15% Similarity=0.017 Sum_probs=54.0
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHhHH-HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhc
Q 008249 196 TGYCRVNELDKALHLFSTMANNGIRPNRVTH-NILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKN 274 (572)
Q Consensus 196 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (572)
.-+...+.++.|..++.+.++. .||...| ..-..++.+.+++..|+.=+..+++..+ .....|..-..++.+.
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP----~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDP----TYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCc----hhhheeeeccHHHHhH
Confidence 3444566677777777777653 5544433 3333566667777777666666666543 3333333333344444
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008249 275 GDKFQALALWNDMFQKNIQTDIVAYNVLING 305 (572)
Q Consensus 275 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 305 (572)
+.+.+|+..|+..... .|+..-....+.-
T Consensus 86 ~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKL--APNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHHHHhhhc--CcCcHHHHHHHHH
Confidence 4455555555544433 4554444444433
No 462
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=33.62 E-value=4.3e+02 Score=25.15 Aligned_cols=84 Identities=14% Similarity=0.097 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHhCCCCC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 008249 239 LGDAVKFLGEVLADDDGK-ATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAFA 317 (572)
Q Consensus 239 ~~~a~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 317 (572)
.+.|.+.|+.....+... ...++.....+.....+.|+.+.-..+++.... .++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 345566666666542210 013344444445555555554444444443332 2344555555566655556555555
Q ss_pred HHHHHHHC
Q 008249 318 YFCQMLKR 325 (572)
Q Consensus 318 ~~~~m~~~ 325 (572)
+++.....
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 55555543
No 463
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.48 E-value=5.3e+02 Score=26.24 Aligned_cols=126 Identities=12% Similarity=-0.003 Sum_probs=64.1
Q ss_pred HHHHHHcC--ChhHHHHHHHHHhhCCCCCCHH--HHHHHHHH-HHhcCCHhHHHHHHHHHHHC-CCCCC-----HhHHHH
Q 008249 160 VNELCKIG--DLEKADHVIREMSEMRPSPNCA--TYNAFITG-YCRVNELDKALHLFSTMANN-GIRPN-----RVTHNI 228 (572)
Q Consensus 160 i~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~-~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~~~~~ 228 (572)
...+.+.| +...+++.++......+.--+. +.-.+... +....+++.|..-++..-.. ..-|+ ..++..
T Consensus 14 Ae~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~Sl 93 (629)
T KOG2300|consen 14 AEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASL 93 (629)
T ss_pred HHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHH
Confidence 33444445 5556666666665544421111 11112221 12245566666665554211 11122 234556
Q ss_pred HHHHHHhCC-ChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008249 229 LVHALCKKG-LLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWN 285 (572)
Q Consensus 229 ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 285 (572)
|.+.|.... .+..+..++++.++.....+...-....-|+..+.-..++..|.+++.
T Consensus 94 La~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 94 LAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 666676655 677788888877765442221233334445666666777777777643
No 464
>PRK09462 fur ferric uptake regulator; Provisional
Probab=32.21 E-value=2.7e+02 Score=22.99 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=15.8
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008249 168 DLEKADHVIREMSEMRPSPNCATYNAFITGYCRVN 202 (572)
Q Consensus 168 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 202 (572)
..-.|.++++.+.+.++..+..|-..-+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34455555555555444444444333344444433
No 465
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=31.14 E-value=4.7e+02 Score=24.86 Aligned_cols=81 Identities=17% Similarity=-0.074 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008249 417 LSNAFSIRDLMLSFGV----SSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQ 492 (572)
Q Consensus 417 ~~~A~~~~~~~~~~~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (572)
.+.|.+.|+.....+. ..+...-..++....+.|..+.-..+++.... .++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 3455555655554211 23444444455555555554444444443333 2345555666666666666666666
Q ss_pred HHHHHHHC
Q 008249 493 LYDEMLRR 500 (572)
Q Consensus 493 ~~~~m~~~ 500 (572)
+++.....
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 66666653
No 466
>PRK09857 putative transposase; Provisional
Probab=30.81 E-value=4e+02 Score=25.23 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008249 227 NILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQ 293 (572)
Q Consensus 227 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 293 (572)
..++.-....++.++..++++.+.+..+ .......++..-+...|..++++++..+|...|+.
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~~----~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERSP----KHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhCc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3444444455555555555555544322 11222234444444555444555555555555543
No 467
>PRK09462 fur ferric uptake regulator; Provisional
Probab=30.80 E-value=2.9e+02 Score=22.83 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=34.6
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008249 461 EMLLDGIFPDVFTYNLLIGASCNL-GHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNM 522 (572)
Q Consensus 461 ~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 522 (572)
.+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34455666554433 334444443 45667777777777766555666655556666666644
No 468
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=30.62 E-value=4.7e+02 Score=25.16 Aligned_cols=95 Identities=15% Similarity=0.011 Sum_probs=58.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008249 227 NILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGF 306 (572)
Q Consensus 227 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 306 (572)
.-=.+-|.+..++..|...|.+-++..+.....+...|+.-..+....|++..|+.=-....... +.....|--=..++
T Consensus 85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 85 KEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGAKCL 163 (390)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhhHHH
Confidence 33445577778888888888888887765533456777777777777777777777666666543 22233333333344
Q ss_pred HhCCCHHHHHHHHHHH
Q 008249 307 CLNGDISSAFAYFCQM 322 (572)
Q Consensus 307 ~~~g~~~~a~~~~~~m 322 (572)
....++.+|..+.++.
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4555555555555443
No 469
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=30.38 E-value=2.3e+02 Score=20.97 Aligned_cols=43 Identities=9% Similarity=0.092 Sum_probs=25.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008249 492 QLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 534 (572)
Q Consensus 492 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 534 (572)
++|+-....|+..|...|..++..+.-.=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666666666666666666655544455555555555543
No 470
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.36 E-value=3.2e+02 Score=23.29 Aligned_cols=62 Identities=8% Similarity=-0.112 Sum_probs=40.0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008249 462 MLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKE 524 (572)
Q Consensus 462 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 524 (572)
+...|++++..-. .++..+...++.-.|.++++.+.+.+...+..|...-+..+...|-+.+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 4455666554433 4445555556667788888888887766666666666777777775543
No 471
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.93 E-value=5.2e+02 Score=25.01 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008249 452 IFDAFSLKKEMLLDGIFPD----VFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHC 517 (572)
Q Consensus 452 ~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 517 (572)
.++...++.+++.. -|+ ..-|-+++......|.++..+.+|++++..|..|-...-..++..+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 35666666666654 344 33466677777778888888888888888887776666666666554
No 472
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=29.64 E-value=2.7e+02 Score=21.64 Aligned_cols=80 Identities=16% Similarity=0.134 Sum_probs=40.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 008249 237 GLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLINGFCLNGDISSAF 316 (572)
Q Consensus 237 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 316 (572)
...++|..+.+.+...+. ....+--.-+..+...|++++|+. .- .....||...|-+|-. .+.|--+++.
T Consensus 20 HcH~EA~tIa~wL~~~~~----~~E~v~lIr~~sLmNrG~Yq~ALl---~~-~~~~~pdL~p~~AL~a--~klGL~~~~e 89 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE----MEEVVALIRLSSLMNRGDYQEALL---LP-QCHCYPDLEPWAALCA--WKLGLASALE 89 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT----THHHHHHHHHHHHHHTT-HHHHHH---HH-TTS--GGGHHHHHHHH--HHCT-HHHHH
T ss_pred HHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHHhhHHHHHHHH---hc-ccCCCccHHHHHHHHH--HhhccHHHHH
Confidence 345666666666666543 333444444455666777777721 11 1222566666655532 3566666666
Q ss_pred HHHHHHHHCC
Q 008249 317 AYFCQMLKRG 326 (572)
Q Consensus 317 ~~~~~m~~~g 326 (572)
..+.++..+|
T Consensus 90 ~~l~rla~~g 99 (116)
T PF09477_consen 90 SRLTRLASSG 99 (116)
T ss_dssp HHHHHHCT-S
T ss_pred HHHHHHHhCC
Confidence 6666665543
No 473
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=29.59 E-value=5e+02 Score=24.68 Aligned_cols=44 Identities=16% Similarity=0.278 Sum_probs=29.8
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 008249 208 LHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLA 251 (572)
Q Consensus 208 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 251 (572)
.++++.|...++.|.-..+.-+.-.+.+.=.+.+.+.+++.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 35666666677777777666666666666667777777777765
No 474
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=29.37 E-value=5.2e+02 Score=24.80 Aligned_cols=136 Identities=14% Similarity=0.127 Sum_probs=77.5
Q ss_pred CCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC
Q 008249 219 IRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMFQK----NIQT 294 (572)
Q Consensus 219 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~ 294 (572)
+..|...++.|... +..++++-.+..+...+..... .-...+-.....||+.|+.+.|++.+.+..+. |.+.
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~--ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~ki 141 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGES--EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKI 141 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccch
Confidence 34455444444332 1223334444444444432111 33456677788899999999999988876554 6667
Q ss_pred CHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008249 295 DIVAYNVLING-FCLNGDISSAFAYFCQMLKRGFLPDV----ITYNTLLNCLCKQGKLDEASHFYGVLSKT 360 (572)
Q Consensus 295 ~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 360 (572)
|+.-+..-+.. |....-+.+-++..+.+.+.|..-+. .+|..+- +....++.+|-.+|-+....
T Consensus 142 DVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 142 DVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 77666554333 33333345556666666677655442 3344332 34456788888888776654
No 475
>PF10569 Thiol-ester_cl: Alpha-macro-globulin thiol-ester bond-forming region; InterPro: IPR019565 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ]. This short highly conserved region of proteinase-binding alpha-macro-globulins contains the cysteine and a glutamine of a thiol-ester bond that is cleaved at the moment of proteinase binding, and mediates the covalent binding of the alpha-macro-globulin to the proteinase. The GCGEQ motif is highly conserved. ; PDB: 2B39_B 2PN5_A 4ACQ_C 1HZF_A 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=28.92 E-value=9.9 Score=21.69 Aligned_cols=8 Identities=38% Similarity=0.891 Sum_probs=6.1
Q ss_pred ccCCCCch
Q 008249 7 CGESSSPV 14 (572)
Q Consensus 7 ~~~~~~~~ 14 (572)
|||+|++.
T Consensus 12 CgEQtm~~ 19 (31)
T PF10569_consen 12 CGEQTMSS 19 (31)
T ss_dssp STTHHHHH
T ss_pred cHHHHHHH
Confidence 99998543
No 476
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=28.86 E-value=4.2e+02 Score=23.64 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=14.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 008249 477 LIGASCNLGHIHLALQLYDEMLRR 500 (572)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~m~~~ 500 (572)
+.....+.|+.++|.+.|.++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 334445566666666666666654
No 477
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=28.55 E-value=2.5e+02 Score=20.88 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHH
Q 008249 503 TPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAI-DHIPFRILKKRYRRMKESDKA 560 (572)
Q Consensus 503 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A 560 (572)
+.|...-..+...+...|++++|.+.+-++.+..-.. +...-..++..+...|.-+..
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~pl 77 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPL 77 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChH
Confidence 4455666677777777778877777777777653222 344456666666666665433
No 478
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=28.22 E-value=4.1e+02 Score=23.26 Aligned_cols=25 Identities=4% Similarity=-0.105 Sum_probs=16.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 008249 441 ALILAETRGGSIFDAFSLKKEMLLD 465 (572)
Q Consensus 441 ~ll~~~~~~g~~~~a~~~~~~m~~~ 465 (572)
+++..|-+..+|.++.++++.|.+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777777654
No 479
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.88 E-value=8.2e+02 Score=26.64 Aligned_cols=141 Identities=13% Similarity=0.163 Sum_probs=79.8
Q ss_pred HHhHHHHHHHHHhCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008249 118 YRRHVAVIRDLCLGGKIGTALWLRRKMIQKGTVPDVLTHNYLVNELCKIGDLEKADHVIREMSEMRPSPNCATYNAFITG 197 (572)
Q Consensus 118 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 197 (572)
...+-..|..|.-.|++++|-...-.|... +..-|-.-+..+...++.... +.-+-...+..+...|..++..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~I---a~~lPt~~~rL~p~vYemvLve 464 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDI---APYLPTGPPRLKPLVYEMVLVE 464 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchh---hccCCCCCcccCchHHHHHHHH
Confidence 346888999999999999999999988865 666677777777777666443 1222222223456678888877
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCH
Q 008249 198 YCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDK 277 (572)
Q Consensus 198 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 277 (572)
+.. .+. .-|.+..+. .+ ...|..+--.-+ .. .+..+.. .+...-..|+..|...+++
T Consensus 465 ~L~-~~~----~~F~e~i~~-Wp--~~Lys~l~iisa-------~~---~q~~q~S-----e~~~L~e~La~LYl~d~~Y 521 (846)
T KOG2066|consen 465 FLA-SDV----KGFLELIKE-WP--GHLYSVLTIISA-------TE---PQIKQNS-----ESTALLEVLAHLYLYDNKY 521 (846)
T ss_pred HHH-HHH----HHHHHHHHh-CC--hhhhhhhHHHhh-------cc---hHHHhhc-----cchhHHHHHHHHHHHccCh
Confidence 766 222 222222221 12 222332211100 00 1111111 2222333477888888888
Q ss_pred HHHHHHHHHHH
Q 008249 278 FQALALWNDMF 288 (572)
Q Consensus 278 ~~A~~~~~~~~ 288 (572)
+.|+.++-...
T Consensus 522 ~~Al~~ylklk 532 (846)
T KOG2066|consen 522 EKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHhcc
Confidence 88888776665
No 480
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=27.68 E-value=3.2e+02 Score=21.98 Aligned_cols=61 Identities=20% Similarity=0.304 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChHHHH-HHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 506 IITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFR-ILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 506 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
..+..++..++.-.|..++|.++++... ..++-...| -+++.|.+..+.++..++-++.++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~Fk---WG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~le 127 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFK---WGHTFLELNKELLEAYAKCKTSEEVIEIQNEYLE 127 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 3456777777888888888888776543 122333333 577888888888787777766653
No 481
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=27.19 E-value=5.8e+02 Score=24.70 Aligned_cols=44 Identities=14% Similarity=0.032 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008249 262 ITSTILMDSYFKNGDKFQALALWNDMFQKNIQTDIVAYNVLING 305 (572)
Q Consensus 262 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 305 (572)
.-|-.++......|.+++++.+|++.+..|-.|-...-..++..
T Consensus 141 KYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 141 KYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 34555555556666666666666666666555544444444443
No 482
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=27.10 E-value=1.8e+02 Score=22.64 Aligned_cols=10 Identities=10% Similarity=0.418 Sum_probs=3.7
Q ss_pred HHHHHHHHhh
Q 008249 172 ADHVIREMSE 181 (572)
Q Consensus 172 A~~~~~~~~~ 181 (572)
|.++++.+.+
T Consensus 19 a~ei~~~l~~ 28 (116)
T cd07153 19 AEEIYERLRK 28 (116)
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 483
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=26.72 E-value=2.9e+02 Score=21.29 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=9.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 008249 267 LMDSYFKNGDKFQALALWNDM 287 (572)
Q Consensus 267 l~~~~~~~g~~~~A~~~~~~~ 287 (572)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444455555555555443
No 484
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=26.71 E-value=1.6e+02 Score=21.34 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=6.3
Q ss_pred CCHHHHHHHHHHH
Q 008249 520 GNMKEAEEVFAKI 532 (572)
Q Consensus 520 g~~~~A~~~~~~m 532 (572)
|+.++|+.+|++.
T Consensus 22 g~~e~Al~~Y~~g 34 (79)
T cd02679 22 GDKEQALAHYRKG 34 (79)
T ss_pred CCHHHHHHHHHHH
Confidence 4445555555443
No 485
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.43 E-value=7.6e+02 Score=25.77 Aligned_cols=54 Identities=9% Similarity=0.158 Sum_probs=30.2
Q ss_pred HHHHHHHHHH---HhHHHHHHHHhcCCCCCCCCcCHHhHHHHHHHHHhCCChhhHHHHHHH
Q 008249 86 VFNALDLILK---ENLDRLKTMRDTGPVRCTLETDYRRHVAVIRDLCLGGKIGTALWLRRK 143 (572)
Q Consensus 86 ~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 143 (572)
+++.++.++. ..+..++.+.+. ..++|...+--.+-..|...|++++|+...-.
T Consensus 28 In~~vDqlwpeIsddl~~Ie~lydd----~sf~~remaaL~~SKvYy~LgeY~~Ai~yAL~ 84 (926)
T COG5116 28 INAHVDQLWPEISDDLRYIEALYDD----DSFDPREMAALCLSKVYYVLGEYQQAIEYALR 84 (926)
T ss_pred HHHHHHHhhhhhhchhhHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 4455666553 223333333332 13455544555566778888999988876544
No 486
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=26.28 E-value=5.8e+02 Score=24.40 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=25.5
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008249 231 HALCKKGLLGDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWNDMF 288 (572)
Q Consensus 231 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 288 (572)
-+..+.|+..+|.+.|+.+.+..+.. .-......|+.++....-+.+...++-+..
T Consensus 283 MCARklGrlrEA~K~~RDL~ke~pl~--t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 283 MCARKLGRLREAVKIMRDLMKEFPLL--TMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33345566666666666665533211 112233344444444444444444444333
No 487
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=26.28 E-value=3.4e+02 Score=21.75 Aligned_cols=44 Identities=7% Similarity=0.003 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008249 240 GDAVKFLGEVLADDDGKATSDVITSTILMDSYFKNGDKFQALALWN 285 (572)
Q Consensus 240 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 285 (572)
++..++|..|...+.+. .-...|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~--~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGT--KLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcch--hhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33556666666665544 555566666666666666666666664
No 488
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=26.16 E-value=1.8e+02 Score=22.66 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=31.6
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhCCChh
Q 008249 194 FITGYCRVNELDKALHLFSTMANNGIRPNRVTHNILVHALCKKGLLG 240 (572)
Q Consensus 194 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 240 (572)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44555555666678888888887776667766666667777766543
No 489
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=25.55 E-value=3.8e+02 Score=21.97 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=19.8
Q ss_pred HHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 008249 171 KADHVIREMSE-MRPSPNCATYNAFITGYCRVNELDKALHLFSTMAN 216 (572)
Q Consensus 171 ~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 216 (572)
+.+.+++.+.+ ..|.........|.-++.+.++++.++++.+.+.+
T Consensus 53 ~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 53 EGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 33444444443 22222223333344444455555555555555444
No 490
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=25.05 E-value=73 Score=31.72 Aligned_cols=56 Identities=7% Similarity=0.126 Sum_probs=30.9
Q ss_pred CCHHHHHHHH---HHH----HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 008249 485 GHIHLALQLY---DEM----LRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDH 541 (572)
Q Consensus 485 g~~~~A~~~~---~~m----~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 541 (572)
-.+++++.-| +++ .++|++.+..++..+...+ -.--+..|..+++.+...|...+.
T Consensus 140 ~~Le~si~~wqy~~rl~~~y~e~gv~in~E~fg~l~~~l-~pptla~aiaylea~la~glgV~~ 202 (428)
T cd00245 140 VPLEKSIENWQYCDRLVGFYEENGVPINREPFGPLTGTL-VPPSILIAIQILEALLAAEQGVKS 202 (428)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCceecccCCcCcccCc-CCcHHHHHHHHHHHHHHccCCCCE
Confidence 3455555555 222 2457776766665543222 122356677777777777666555
No 491
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=24.92 E-value=3.1e+02 Score=21.45 Aligned_cols=31 Identities=16% Similarity=0.058 Sum_probs=19.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 008249 477 LIGASCNLGHIHLALQLYDEMLRRGITPDIIT 508 (572)
Q Consensus 477 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 508 (572)
+++.+-++...++|+++++-|.+.| ..+...
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~ 97 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEE 97 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 3444566677777777777777766 344433
No 492
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=24.57 E-value=2.4e+02 Score=19.27 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=13.4
Q ss_pred HcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008249 165 KIGDLEKADHVIREMSEMRPSPNCATYNAFI 195 (572)
Q Consensus 165 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 195 (572)
..|++=+|.++++.+=...+.+....+..+|
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglI 41 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLI 41 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHH
Confidence 3455555555555554333323333444444
No 493
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=24.52 E-value=1.8e+02 Score=22.94 Aligned_cols=16 Identities=13% Similarity=0.277 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHhhCCC
Q 008249 169 LEKADHVIREMSEMRP 184 (572)
Q Consensus 169 ~~~A~~~~~~~~~~~~ 184 (572)
.-.|.++++.+.+.++
T Consensus 23 ~~ta~ei~~~l~~~~~ 38 (120)
T PF01475_consen 23 HLTAEEIYDKLRKKGP 38 (120)
T ss_dssp SEEHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHhhhccC
Confidence 3334444444433333
No 494
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=24.10 E-value=6.6e+02 Score=24.26 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008249 416 DLSNAFSIRDLMLSFGVSSNVFTFNALILAETR------GGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHL 489 (572)
Q Consensus 416 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (572)
-.+++..++++....+. |..+.....|.++-. .-+|.....+|+.+......| .++.|--+ +.....-++.
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-vV~LNRAV-Ala~~~Gp~a 347 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-VVTLNRAV-ALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-eEeehHHH-HHHHhhhHHh
Confidence 35666666766665544 566666666554421 235666666666666543222 23333322 2333444566
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008249 490 ALQLYDEMLRRG-ITPDIITYTELIKGHCARGNMKEAEEVFAKIQTL 535 (572)
Q Consensus 490 A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 535 (572)
++...+.+...+ +.--...+..-...+.+.|+.++|...|++....
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 666666665542 1111222333445566777777777777777665
No 495
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=23.88 E-value=1.2e+03 Score=27.22 Aligned_cols=131 Identities=14% Similarity=0.128 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 008249 434 SNVFTFNALILAETRGGSIFDAFSLKKEML-------LDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRR-----G 501 (572)
Q Consensus 434 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-------~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g 501 (572)
+....|..+...+-+.|+.++|...-.... ...-.-+...|..+.-.+...++...|...+.+.... |
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g 1050 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG 1050 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC
Confidence 345566777777777788777776544322 1111112444555555555666777777777666542 1
Q ss_pred -CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC--CChHHHHHHHHHHHhcCCHHHHHHHH
Q 008249 502 -ITPDI-ITYTELIKGHCARGNMKEAEEVFAKIQTL-----GLA--IDHIPFRILKKRYRRMKESDKARDIH 564 (572)
Q Consensus 502 -~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~ 564 (572)
..|.. .+++.+-..+...++++.|.++++.+.+. |.+ ....++..+.+.+...+++..|....
T Consensus 1051 e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1051 EDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 12333 33333333344457777888877777653 111 13344555555555555555554433
No 496
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=23.84 E-value=6.6e+02 Score=24.22 Aligned_cols=93 Identities=17% Similarity=0.015 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 008249 439 FNALILAETRGGSIFDAFSLKKEMLLDGI---FPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDI-ITYTELIK 514 (572)
Q Consensus 439 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~ 514 (572)
|--=.+-|.+..++..|...|.+-++..+ ..+.+.|+.-..+-...|++..|+.=....... .|+. ..|..=..
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRGAK 161 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--CcchhhhhhhhhH
Confidence 33334445566666666666666554321 223455555555555566666666655555543 3332 33433444
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 008249 515 GHCARGNMKEAEEVFAKIQ 533 (572)
Q Consensus 515 ~~~~~g~~~~A~~~~~~m~ 533 (572)
++....++++|....++..
T Consensus 162 c~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 4455555555555555443
No 497
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=23.82 E-value=7e+02 Score=24.47 Aligned_cols=55 Identities=11% Similarity=0.066 Sum_probs=29.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 008249 303 INGFCLNGDISSAFAYFCQMLKRGFLPDVITYNTLLNCLC-KQGKLDEASHFYGVL 357 (572)
Q Consensus 303 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~A~~~~~~~ 357 (572)
|..+.+.|-+..|+++.+-+......-|......+|+.|+ +.++++--.++.+..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 3445566666666666666665543334444455555443 445555555555443
No 498
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=23.58 E-value=5.7e+02 Score=23.31 Aligned_cols=137 Identities=15% Similarity=0.122 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008249 367 ISYKTIIQGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIDGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAE 446 (572)
Q Consensus 367 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 446 (572)
.....-+..|...-++.-|-...+++.+ ...+-.++++ |.+..+..--.++.+-....+++-+......++ +
T Consensus 131 QAlRRtMEiyS~ttRFalaCN~s~KIiE-----PIQSRCAiLR-ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--f 202 (333)
T KOG0991|consen 131 QALRRTMEIYSNTTRFALACNQSEKIIE-----PIQSRCAILR-YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--F 202 (333)
T ss_pred HHHHHHHHHHcccchhhhhhcchhhhhh-----hHHhhhHhhh-hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--h
Q ss_pred HhcCCHHHHHHHHHHHHhC------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008249 447 TRGGSIFDAFSLKKEMLLD------------GIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTEL 512 (572)
Q Consensus 447 ~~~g~~~~a~~~~~~m~~~------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 512 (572)
...|+..+|+.-++.-... --.|.+.....++..|.+ +++++|.+++.++.+.|+.|....-+.+
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 499
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=23.55 E-value=3.5e+02 Score=20.83 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=6.7
Q ss_pred HHHHcCCHHHHHHHHHH
Q 008249 375 GLCIHGDIVKAREFLLS 391 (572)
Q Consensus 375 ~~~~~g~~~~A~~~~~~ 391 (572)
.|...++.++|...+.+
T Consensus 11 ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 11 EYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHT-HHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHH
Confidence 33334444444444433
No 500
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=22.63 E-value=1.9e+02 Score=17.45 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008249 543 PFRILKKRYRRMKESDKARDIHQKWLL 569 (572)
Q Consensus 543 ~~~~l~~~~~~~g~~~~A~~~~~~~l~ 569 (572)
+|..|+..-...++++.|.+=|++.++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Done!