Query 008250
Match_columns 572
No_of_seqs 422 out of 3286
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 21:25:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 7E-100 2E-104 822.2 41.8 507 1-570 134-641 (727)
2 PLN03192 Voltage-dependent pot 100.0 1.7E-59 3.8E-64 538.2 44.6 392 1-472 109-500 (823)
3 KOG0501 K+-channel KCNQ [Inorg 100.0 6.5E-59 1.4E-63 471.8 25.5 450 1-535 266-718 (971)
4 KOG0500 Cyclic nucleotide-gate 100.0 1.7E-57 3.7E-62 457.8 31.1 385 1-467 46-432 (536)
5 KOG0499 Cyclic nucleotide-gate 100.0 3E-48 6.4E-53 395.7 25.1 357 15-461 286-644 (815)
6 PRK09392 ftrB transcriptional 99.7 1.4E-15 3E-20 149.9 15.2 131 334-475 6-136 (236)
7 PRK11753 DNA-binding transcrip 99.6 2.4E-14 5.1E-19 138.5 15.2 116 344-469 6-122 (211)
8 PRK10402 DNA-binding transcrip 99.5 2.8E-13 6.1E-18 132.6 12.9 113 347-470 20-133 (226)
9 PRK11161 fumarate/nitrate redu 99.5 1E-12 2.2E-17 129.3 16.4 123 337-471 15-139 (235)
10 cd00038 CAP_ED effector domain 99.4 1.4E-12 2.9E-17 112.0 13.0 111 342-463 1-112 (115)
11 KOG3713 Voltage-gated K+ chann 99.4 1E-12 2.3E-17 135.4 13.1 60 212-271 379-438 (477)
12 smart00100 cNMP Cyclic nucleot 99.4 7.3E-12 1.6E-16 108.1 14.8 115 342-465 1-116 (120)
13 PF00027 cNMP_binding: Cyclic 99.4 3.7E-12 8.1E-17 105.1 10.3 90 360-460 1-91 (91)
14 COG0664 Crp cAMP-binding prote 99.3 4.4E-11 9.5E-16 115.2 17.8 122 339-471 4-126 (214)
15 TIGR03697 NtcA_cyano global ni 99.3 1.3E-11 2.8E-16 117.6 13.1 127 366-505 1-128 (193)
16 PRK09391 fixK transcriptional 99.3 6.9E-12 1.5E-16 123.1 11.5 105 353-471 33-138 (230)
17 PRK13918 CRP/FNR family transc 99.2 7.5E-11 1.6E-15 113.2 13.2 127 357-505 5-134 (202)
18 PF00520 Ion_trans: Ion transp 99.2 7.2E-11 1.6E-15 112.2 11.2 169 30-259 25-200 (200)
19 KOG0614 cGMP-dependent protein 99.2 3.7E-11 8.1E-16 123.7 7.7 131 332-471 269-400 (732)
20 PLN02868 acyl-CoA thioesterase 99.2 2.6E-10 5.7E-15 121.5 13.8 113 334-459 7-119 (413)
21 COG2905 Predicted signal-trans 99.1 6.5E-10 1.4E-14 116.3 14.7 116 334-463 6-121 (610)
22 KOG0614 cGMP-dependent protein 99.1 1E-10 2.3E-15 120.4 7.2 125 328-467 147-271 (732)
23 KOG1113 cAMP-dependent protein 99.0 6E-10 1.3E-14 110.3 8.2 113 333-460 120-232 (368)
24 KOG1545 Voltage-gated shaker-l 99.0 2.8E-10 6E-15 112.0 3.9 51 213-263 396-446 (507)
25 PF07885 Ion_trans_2: Ion chan 99.0 4.4E-09 9.5E-14 84.9 10.2 54 211-264 25-78 (79)
26 KOG1419 Voltage-gated K+ chann 98.8 2.2E-08 4.8E-13 104.1 12.2 88 208-302 267-354 (654)
27 KOG4390 Voltage-gated A-type K 98.8 6.8E-10 1.5E-14 110.2 -0.5 52 212-263 358-413 (632)
28 KOG1113 cAMP-dependent protein 98.7 2.4E-08 5.1E-13 99.2 6.9 117 328-458 233-349 (368)
29 KOG1420 Ca2+-activated K+ chan 98.2 8.7E-07 1.9E-11 92.3 2.6 136 209-352 287-427 (1103)
30 PRK10537 voltage-gated potassi 98.2 2.8E-05 6E-10 81.9 13.6 53 211-263 169-221 (393)
31 KOG3684 Ca2+-activated K+ chan 98.1 0.00012 2.7E-09 75.4 16.3 92 207-306 284-375 (489)
32 KOG2968 Predicted esterase of 98.0 9.6E-06 2.1E-10 89.1 7.3 114 349-473 499-613 (1158)
33 PF01007 IRK: Inward rectifier 97.7 0.00016 3.5E-09 74.3 9.7 57 209-265 83-141 (336)
34 KOG2968 Predicted esterase of 97.5 0.00054 1.2E-08 75.8 10.5 112 353-468 110-222 (1158)
35 KOG1418 Tandem pore domain K+ 97.4 0.0004 8.7E-09 74.2 7.6 59 211-269 116-174 (433)
36 PRK11832 putative DNA-binding 97.3 0.0059 1.3E-07 57.9 14.2 96 349-458 13-109 (207)
37 PF04831 Popeye: Popeye protei 97.3 0.014 3E-07 52.0 14.7 109 345-463 14-124 (153)
38 KOG4404 Tandem pore domain K+ 96.4 0.018 3.8E-07 57.4 9.2 57 211-267 187-251 (350)
39 KOG4404 Tandem pore domain K+ 95.6 0.002 4.4E-08 63.8 -1.4 46 208-253 78-123 (350)
40 KOG3542 cAMP-regulated guanine 95.6 0.022 4.9E-07 61.3 6.1 114 331-459 277-392 (1283)
41 KOG3827 Inward rectifier K+ ch 95.1 0.1 2.2E-06 53.4 8.7 59 211-269 113-173 (400)
42 PLN03223 Polycystin cation cha 93.7 12 0.00026 44.9 22.0 16 31-46 1208-1224(1634)
43 KOG1418 Tandem pore domain K+ 92.0 0.037 8.1E-07 59.0 -0.6 48 209-256 241-296 (433)
44 KOG3542 cAMP-regulated guanine 87.7 0.67 1.4E-05 50.5 4.5 93 334-449 36-128 (1283)
45 KOG2302 T-type voltage-gated C 86.9 32 0.00069 40.0 16.8 30 234-263 1358-1388(1956)
46 KOG3193 K+ channel subunit [In 83.5 2.2 4.7E-05 45.6 5.8 33 212-244 219-251 (1087)
47 TIGR00870 trp transient-recept 82.2 1E+02 0.0023 35.6 19.9 32 235-266 587-618 (743)
48 KOG2301 Voltage-gated Ca2+ cha 79.1 12 0.00026 46.5 10.6 35 218-252 1058-1092(1592)
49 KOG3676 Ca2+-permeable cation 78.3 81 0.0017 36.0 15.8 75 223-298 601-682 (782)
50 TIGR03037 anthran_nbaC 3-hydro 77.6 9.1 0.0002 34.9 7.0 75 358-450 29-105 (159)
51 COG4709 Predicted membrane pro 77.2 10 0.00022 35.3 7.2 71 276-348 6-80 (195)
52 PRK13290 ectC L-ectoine syntha 75.7 15 0.00032 32.2 7.7 69 359-446 38-106 (125)
53 PF07883 Cupin_2: Cupin domain 73.9 5.7 0.00012 30.3 4.2 45 361-412 3-48 (71)
54 PF13314 DUF4083: Domain of un 67.8 20 0.00044 26.4 5.5 50 236-285 4-56 (58)
55 PRK13264 3-hydroxyanthranilate 64.9 15 0.00032 34.1 5.4 71 364-452 42-113 (177)
56 PF08006 DUF1700: Protein of u 61.6 38 0.00083 31.5 7.9 55 276-332 6-64 (181)
57 KOG3599 Ca2+-modulated nonsele 61.2 3.2E+02 0.007 31.9 18.3 15 31-45 493-508 (798)
58 PF00060 Lig_chan: Ligand-gate 60.7 10 0.00023 33.6 3.8 74 208-287 42-115 (148)
59 KOG3614 Ca2+/Mg2+-permeable ca 60.0 3.3E+02 0.0072 33.3 16.2 71 27-101 853-923 (1381)
60 PF14377 DUF4414: Domain of un 55.0 17 0.00036 30.9 3.8 45 287-331 51-105 (108)
61 PF05899 Cupin_3: Protein of u 52.8 28 0.0006 27.2 4.5 42 363-412 14-55 (74)
62 smart00835 Cupin_1 Cupin. This 52.4 47 0.001 29.6 6.6 54 358-413 32-87 (146)
63 PF10011 DUF2254: Predicted me 51.7 78 0.0017 33.3 9.0 61 207-267 97-157 (371)
64 KOG1054 Glutamate-gated AMPA-t 51.3 21 0.00044 39.1 4.5 72 212-289 597-668 (897)
65 COG1917 Uncharacterized conser 50.3 43 0.00093 29.2 5.9 51 358-415 45-96 (131)
66 KOG0498 K+-channel ERG and rel 49.5 91 0.002 35.7 9.5 41 318-358 371-416 (727)
67 COG0662 {ManC} Mannose-6-phosp 45.0 62 0.0013 28.2 6.0 48 357-411 37-85 (127)
68 PF07697 7TMR-HDED: 7TM-HD ext 44.9 1.2E+02 0.0025 28.9 8.5 58 319-377 147-207 (222)
69 PF08016 PKD_channel: Polycyst 40.4 4.8E+02 0.01 27.8 13.7 23 24-46 230-253 (425)
70 KOG4440 NMDA selective glutama 39.2 67 0.0015 35.5 6.0 53 211-263 614-666 (993)
71 PLN03192 Voltage-dependent pot 37.1 7.5E+02 0.016 29.0 21.7 42 287-333 357-398 (823)
72 PF12973 Cupin_7: ChrR Cupin-l 34.7 78 0.0017 25.6 4.7 64 357-445 25-88 (91)
73 PRK04190 glucose-6-phosphate i 34.2 1.9E+02 0.0042 27.3 7.8 53 358-412 70-131 (191)
74 PF14377 DUF4414: Domain of un 34.0 70 0.0015 27.1 4.4 49 288-336 8-69 (108)
75 TIGR03404 bicupin_oxalic bicup 34.0 1.2E+02 0.0026 31.8 7.1 52 358-412 69-121 (367)
76 PF01484 Col_cuticle_N: Nemato 33.8 1.7E+02 0.0038 20.7 6.8 42 239-280 8-49 (53)
77 KOG3609 Receptor-activated Ca2 32.0 5.7E+02 0.012 29.7 12.1 19 212-230 555-573 (822)
78 PF00520 Ion_trans: Ion transp 30.7 4E+02 0.0087 24.0 9.7 54 205-258 136-194 (200)
79 TIGR03404 bicupin_oxalic bicup 30.1 1.5E+02 0.0033 31.1 7.1 51 358-411 247-299 (367)
80 COG1422 Predicted membrane pro 29.0 2.2E+02 0.0048 27.0 7.0 39 247-285 48-89 (201)
81 PRK06771 hypothetical protein; 28.7 3.3E+02 0.0073 22.4 7.5 49 238-289 3-51 (93)
82 KOG1545 Voltage-gated shaker-l 28.4 1.3E+02 0.0028 31.1 5.8 51 39-93 290-343 (507)
83 KOG2301 Voltage-gated Ca2+ cha 28.4 2.8E+02 0.006 35.1 9.6 15 32-46 501-516 (1592)
84 PRK11171 hypothetical protein; 27.9 1.5E+02 0.0033 29.5 6.4 49 357-412 185-234 (266)
85 PRK09108 type III secretion sy 27.5 2E+02 0.0044 30.0 7.3 66 234-299 176-241 (353)
86 PF00190 Cupin_1: Cupin; Inte 26.7 2.8E+02 0.0061 24.4 7.3 56 358-414 36-97 (144)
87 PRK13109 flhB flagellar biosyn 25.8 2.1E+02 0.0044 30.0 7.0 63 237-299 186-248 (358)
88 TIGR01404 FlhB_rel_III type II 25.1 2.2E+02 0.0047 29.6 7.0 62 239-300 178-239 (342)
89 PHA02909 hypothetical protein; 24.4 1E+02 0.0022 22.6 3.0 40 222-264 14-53 (72)
90 PF06249 EutQ: Ethanolamine ut 24.0 2E+02 0.0044 26.1 5.7 51 375-446 94-144 (152)
91 PF08566 Pam17: Mitochondrial 23.7 5.9E+02 0.013 23.6 9.3 62 231-292 69-133 (173)
92 COG3837 Uncharacterized conser 23.3 1.2E+02 0.0025 27.6 4.0 48 361-415 47-96 (161)
93 PRK11171 hypothetical protein; 22.8 1.8E+02 0.0039 29.0 5.8 48 358-412 63-112 (266)
94 COG3718 IolB Uncharacterized e 22.7 3.6E+02 0.0077 26.3 7.2 78 358-450 31-112 (270)
95 PHA01757 hypothetical protein 21.6 4.2E+02 0.0091 21.1 6.2 43 234-277 4-46 (98)
96 TIGR02272 gentisate_1_2 gentis 21.2 2.3E+02 0.0049 29.4 6.2 74 361-455 255-328 (335)
97 PF11151 DUF2929: Protein of u 21.1 71 0.0015 23.7 1.8 18 210-227 2-19 (57)
98 COG4792 EscU Type III secretor 20.9 5.5E+02 0.012 26.1 8.4 50 250-299 191-240 (349)
99 TIGR02451 anti_sig_ChrR anti-s 20.9 2.2E+02 0.0047 27.4 5.7 71 357-452 128-200 (215)
100 COG5559 Uncharacterized conser 20.6 1.1E+02 0.0024 22.7 2.6 23 285-307 7-29 (65)
101 PRK12721 secretion system appa 20.1 3.4E+02 0.0074 28.3 7.3 65 236-300 176-240 (349)
102 PF06052 3-HAO: 3-hydroxyanthr 20.0 1.9E+02 0.0041 26.1 4.6 60 374-450 51-110 (151)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=7.2e-100 Score=822.21 Aligned_cols=507 Identities=55% Similarity=0.914 Sum_probs=448.3
Q ss_pred CeEEeeeceecCCCcccCCCeEeeChHHHHHHhhhhhHHHHHHhhcchhHHHHhhhccCCCCchhhhhhHHHHHHHHHhh
Q 008250 1 MALQFRTAFIAPSSRVFGRGELVIDPAQIAKRYMRRYFIIDFLAVLPLPQIVVWRFLLRSNGSDVLATKQALFFIVLFQY 80 (572)
Q Consensus 1 I~l~F~t~y~~~~~~~~~~g~lV~d~~~I~~~Ylk~~F~~Dlis~lP~~~i~~~~~~~~~~~~~~~~~~~~Lrl~~l~~~ 80 (572)
|++||+|||++++| -++|.||++||+||+|+||++|++|++|+|+++.|.++ ...........|..+.++||
T Consensus 134 IvL~Frtayv~~~s-----~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~---~~~~~~~~~~~l~~il~~~r 205 (727)
T KOG0498|consen 134 IVLNFRTAYVDPSS-----YELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI---GSTSLALESTILVGILLLQR 205 (727)
T ss_pred HHHhheEEEECCCC-----ceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee---cccchhhhHHHHHHHHHHHH
Confidence 78999999999996 37999999999999999999999999999999998876 22222233346777778889
Q ss_pred hhHHHHhhchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhccCCCCCcccceecCCCC
Q 008250 81 FPRFFRILPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHVVGALWYLLALERNDTCWRKACSVTANCTKDFLYCGNQD 160 (572)
Q Consensus 81 l~rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~ll~~~l~~H~~ac~wy~~~~~~~~~cw~~~c~~~~~c~~~y~~~~~~~ 160 (572)
+||+.|++++++++++..+++.+++|++++++|++|||++||.||+||+++++++.+||+.+|- .+|...+++
T Consensus 206 L~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw--~~~l~~~~~----- 278 (727)
T KOG0498|consen 206 LPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATW--LGSLGRLLS----- 278 (727)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc--ccccccccc-----
Confidence 9999999999999999999999999999999999999999999999999999999999975421 111100222
Q ss_pred CcccccccccchhcccccCCCCCCCCCCCccchhhhhhcCcccchhhHHHHHHHHHHHHHhhhcccccccccCCchhHHH
Q 008250 161 MTGYAAWHDISNTTLESKCSADEDDPPFDFGIYSQALSSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIF 240 (572)
Q Consensus 161 ~~~~~~W~~~~~~~l~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~Y~~slywa~~tlttvGygdi~~~~~~E~~~ 240 (572)
| .+..|+||+| +.+.+|++|+||+++||||+|||+++|+|..|++|
T Consensus 279 ------------------~----~~~~~~fg~~------------s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iF 324 (727)
T KOG0498|consen 279 ------------------C----YNLSFTFGIY------------SLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIF 324 (727)
T ss_pred ------------------c----Ccccccccch------------hHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHH
Confidence 2 1233678876 45569999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCChhhhhhcC
Q 008250 241 SIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGVDEENLVQSL 320 (572)
Q Consensus 241 ~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~L 320 (572)
+|++|++|+++||++||||++++|+.+.+.++|+.|++++++||++|+||++||+||++|++|+|..++|+||+++|++|
T Consensus 325 si~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~L 404 (727)
T KOG0498|consen 325 SIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSL 404 (727)
T ss_pred HHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeee
Q 008250 321 PKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFF 400 (572)
Q Consensus 321 p~~Lr~~i~~~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~ 400 (572)
|++||+||++|+|.++++++|+|+++|++++++||.++++..|+|||+|++|||+.++||||.+|.+++.+.++|.+..
T Consensus 405 P~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~- 483 (727)
T KOG0498|consen 405 PKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFV- 483 (727)
T ss_pred CHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEE-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988885544
Q ss_pred eeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHH
Q 008250 401 NRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTW 480 (572)
Q Consensus 401 ~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r~~s~~~~~~ 480 (572)
+..+++||+|||..++|.++. ++++||+|+|.|+++.|++++|++++++||++++++++|++++|+++|++|
T Consensus 484 -~~~L~~Gd~~GeEl~~~~~~~-------p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~ 555 (727)
T KOG0498|consen 484 -VAILGPGDFFGEELLTWCLDL-------PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTW 555 (727)
T ss_pred -EEEecCCCccchHHHHHHhcC-------CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhh
Confidence 899999999998777787731 147999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHHhhhcccccCCCCCCCCcchhhHHHhHHHHHHHhhhhhccc-ccchhcccCCC
Q 008250 481 AACFIQAAWRRYSKRKKMEQTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAANALRGVHRNRN-AKSARELVKLQ 559 (572)
Q Consensus 481 ~~~~~~~~~~~~~~r~~~~~~~~~e~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 559 (572)
+++++|.+|+++.+|+....+...++.... -..+.+....++++.+++++|+|..+.++.++. +.....++.++
T Consensus 556 aa~~iq~a~r~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (727)
T KOG0498|consen 556 AACFIQAAWRRHIKRKGEEELALEEEESAI-----RGDDRGSKSLLRAGILASRFAANGRPPLHTAASRGSSDCALLLLQ 630 (727)
T ss_pred hhhhHHHHHHHHHHhhccchhhhhcchhhh-----ccccccchhhhhcccccccccccCCCccccccccCccccccccCC
Confidence 999999999999999988777665443222 112234447899999999999999999887643 33446789999
Q ss_pred CCCCCCCCCCc
Q 008250 560 KPPEPDFTAED 570 (572)
Q Consensus 560 ~~~~~~~~~~~ 570 (572)
||.+|+|+.++
T Consensus 631 ~~~~p~f~~~~ 641 (727)
T KOG0498|consen 631 KPADPDFSDAE 641 (727)
T ss_pred CCCCCCccccc
Confidence 99999999653
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=1.7e-59 Score=538.15 Aligned_cols=392 Identities=22% Similarity=0.383 Sum_probs=328.2
Q ss_pred CeEEeeeceecCCCcccCCCeEeeChHHHHHHhhhhhHHHHHHhhcchhHHHHhhhccCCCCchhhhhhHHHHHHHHHhh
Q 008250 1 MALQFRTAFIAPSSRVFGRGELVIDPAQIAKRYMRRYFIIDFLAVLPLPQIVVWRFLLRSNGSDVLATKQALFFIVLFQY 80 (572)
Q Consensus 1 I~l~F~t~y~~~~~~~~~~g~lV~d~~~I~~~Ylk~~F~~Dlis~lP~~~i~~~~~~~~~~~~~~~~~~~~Lrl~~l~~~ 80 (572)
|+++|+|||++++ .|.+|.||++|++||+|+||++|++|++|++.+..... .. .......++|++++
T Consensus 109 i~l~f~~ay~d~~-----~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~-~~---~~~~~~~~~l~llr---- 175 (823)
T PLN03192 109 IVLTFFVAYIDPR-----TQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLIT-GT---VKLNLSYSLLGLLR---- 175 (823)
T ss_pred HHhheeEEEEeCC-----CcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhc-CC---ccchHHHHHHHHHH----
Confidence 5789999999987 48999999999999999999999999999987754221 11 11112233444443
Q ss_pred hhHHHHhhchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhccCCCCCcccceecCCCC
Q 008250 81 FPRFFRILPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHVVGALWYLLALERNDTCWRKACSVTANCTKDFLYCGNQD 160 (572)
Q Consensus 81 l~rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~ll~~~l~~H~~ac~wy~~~~~~~~~cw~~~c~~~~~c~~~y~~~~~~~ 160 (572)
+.|+.|+.+++.++.+.... ...|...++.++..++++||+||+||+++.. +
T Consensus 176 l~Rl~ri~~~~~~le~~~~~--~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~-------------------~------- 227 (823)
T PLN03192 176 FWRLRRVKQLFTRLEKDIRF--SYFWIRCARLLSVTLFLVHCAGCLYYLIADR-------------------Y------- 227 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------c-------
Confidence 34555555666665544332 2345565666666677899999999999731 0
Q ss_pred CcccccccccchhcccccCCCCCCCCCCCccchhhhhhcCcccchhhHHHHHHHHHHHHHhhhcccccccccCCchhHHH
Q 008250 161 MTGYAAWHDISNTTLESKCSADEDDPPFDFGIYSQALSSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIF 240 (572)
Q Consensus 161 ~~~~~~W~~~~~~~l~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~Y~~slywa~~tlttvGygdi~~~~~~E~~~ 240 (572)
...+.+| +... .+. ..+.+++.+|++|+||+++|||||||||++|.|..|++|
T Consensus 228 ~~~~~~W-------i~~~------~~~--------------~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~ 280 (823)
T PLN03192 228 PHQGKTW-------IGAV------IPN--------------FRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIF 280 (823)
T ss_pred CCCCCch-------HHHh------hhc--------------cccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHH
Confidence 1234678 3110 000 125688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCChhhhhhcC
Q 008250 241 SIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGVDEENLVQSL 320 (572)
Q Consensus 241 ~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~L 320 (572)
++++|++|+++|||+||+|++++.+.+.+..+|+++++.+++||+++++|+.||+||++|++++|+. .+.+++++++.|
T Consensus 281 ~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~~~~~~~~l~~L 359 (823)
T PLN03192 281 IIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKA-ESLNQQQLIDQL 359 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-ccccHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999999974 567889999999
Q ss_pred ChhHHHHHHHHHHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeee
Q 008250 321 PKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFF 400 (572)
Q Consensus 321 p~~Lr~~i~~~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~ 400 (572)
|++||.+|+.+++.+.++++++|++++++++.+|+..++++.|.|||.|+.+||.++++|||.+|.|+++..++|++.+
T Consensus 360 p~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~- 438 (823)
T PLN03192 360 PKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERV- 438 (823)
T ss_pred CHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCccee-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998877788877
Q ss_pred eeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008250 401 NRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRF 472 (572)
Q Consensus 401 ~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r~ 472 (572)
+..+++|++|||.+++. .. +++.+++|.++|+++.|++++|.++++++|+....++++..+.
T Consensus 439 -l~~l~~Gd~FGE~~~l~-~~--------p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~ 500 (823)
T PLN03192 439 -VGTLGCGDIFGEVGALC-CR--------PQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQH 500 (823)
T ss_pred -eEEccCCCEecchHHhc-CC--------CCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 78999999999999742 22 2678999999999999999999999999999888777776653
No 3
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-59 Score=471.81 Aligned_cols=450 Identities=23% Similarity=0.387 Sum_probs=363.1
Q ss_pred CeEEeeeceecCCCcccCCCeEeeChHHHHHHhhhhhHHHHHHhhcchhHHHHhhhccCCCCchhhhhhHHHHHHHHHhh
Q 008250 1 MALQFRTAFIAPSSRVFGRGELVIDPAQIAKRYMRRYFIIDFLAVLPLPQIVVWRFLLRSNGSDVLATKQALFFIVLFQY 80 (572)
Q Consensus 1 I~l~F~t~y~~~~~~~~~~g~lV~d~~~I~~~Ylk~~F~~Dlis~lP~~~i~~~~~~~~~~~~~~~~~~~~Lrl~~l~~~ 80 (572)
|++||+|.|+.|- ||+|.||+.|+.+|+|+||++|++|+||++.+..+... +...-..+..|+
T Consensus 266 IvLNFHTTFVGPg------GEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~----degI~SLFSaLK------- 328 (971)
T KOG0501|consen 266 IVLNFHTTFVGPG------GEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERD----DEGIGSLFSALK------- 328 (971)
T ss_pred hhhhcceeeecCC------CceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhcc----cccHHHHHHHHH-------
Confidence 7899999999995 99999999999999999999999999999988764321 112223445555
Q ss_pred hhHHHHhhchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhccCCCCCcccceecCCCC
Q 008250 81 FPRFFRILPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHVVGALWYLLALERNDTCWRKACSVTANCTKDFLYCGNQD 160 (572)
Q Consensus 81 l~rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~ll~~~l~~H~~ac~wy~~~~~~~~~cw~~~c~~~~~c~~~y~~~~~~~ 160 (572)
+.||+|+.|+.+++.+.. ++.-+.++..++.|++++||+||+||.++-.+.. .. ..+
T Consensus 329 VVRLLRLGRVaRKLD~Yl----EYGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~-----------------~~--~~n 385 (971)
T KOG0501|consen 329 VVRLLRLGRVARKLDHYL----EYGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVR-----------------DE--MDN 385 (971)
T ss_pred HHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHhheeccchhee-----------------cc--ccc
Confidence 567888888888876654 3444455666778999999999999999842210 00 011
Q ss_pred CcccccccccchhcccccCCCCCCCCCCCccchhhhhhcCc-ccchhhHHHHHHHHHHHHHhhhcccccccccCCchhHH
Q 008250 161 MTGYAAWHDISNTTLESKCSADEDDPPFDFGIYSQALSSGI-VSSKKFFSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVI 239 (572)
Q Consensus 161 ~~~~~~W~~~~~~~l~~~~~~~~~~~~~~~gi~~~~~~~~~-~~~~~~~~~Y~~slywa~~tlttvGygdi~~~~~~E~~ 239 (572)
....++|+-... ++.+..|+|..- +.+. +..++--..|+.|+||.++.|||||+|++.|.|..|++
T Consensus 386 ~i~~dsWL~kLa---------~~~~tpY~~~~s----~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKi 452 (971)
T KOG0501|consen 386 TIQPDSWLWKLA---------NDIGTPYNYNLS----NKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKI 452 (971)
T ss_pred ccccchHHHHHH---------hhcCCCceeccC----CCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHH
Confidence 234567832111 334566666411 1122 23556778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCChhhhhhc
Q 008250 240 FSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGVDEENLVQS 319 (572)
Q Consensus 240 ~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~ 319 (572)
|++.+|++|.++||.++|+|++++|++++....|++.++.+.+||+-..+|+.|.+||.+|.--.|..++|+|.+++|.-
T Consensus 453 F~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~ 532 (971)
T KOG0501|consen 453 FGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGY 532 (971)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceee
Q 008250 320 LPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGF 399 (572)
Q Consensus 320 Lp~~Lr~~i~~~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~ 399 (572)
.|+++|.||+.|+..+.++..|.|+-.++.++++++..++..+..|||.|++.||..+.++||++|.+++...++-
T Consensus 533 CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDEV---- 608 (971)
T KOG0501|consen 533 CPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDEV---- 608 (971)
T ss_pred CccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCcE----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999865432
Q ss_pred eeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHH
Q 008250 400 FNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRT 479 (572)
Q Consensus 400 ~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r~~s~~~~~ 479 (572)
+++++.||+||+.- |.-. .+..+.++++|+|.|.+..|.++.+.++++-|..+++ .
T Consensus 609 --VAILGKGDVFGD~F--WK~~-----t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFan---------------S 664 (971)
T KOG0501|consen 609 --VAILGKGDVFGDEF--WKEN-----TLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFAN---------------S 664 (971)
T ss_pred --EEEeecCccchhHH--hhhh-----hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHH---------------H
Confidence 79999999999974 3222 2334779999999999999999999999887765544 2
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHhhhHHhHHhhhcccccCCCCCCCCcchhhHHHhHH
Q 008250 480 WAACF--IQAAWRRYSKRKKMEQTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRF 535 (572)
Q Consensus 480 ~~~~~--~~~~~~~~~~r~~~~~~~~~e~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 535 (572)
+++.+ ..+..+|+..|+++...+++|+|+...+++++. -.++...|...+||
T Consensus 665 FaRNl~LTyNLr~RiiFRKvaDVKrEkE~~~krKNE~~L~----lp~DHpvRklf~rf 718 (971)
T KOG0501|consen 665 FARNLTLTYNLRHRIIFRKVADVKREKELRAKRKNEPKLT----LPNDHPVRKLFQRF 718 (971)
T ss_pred hhhceeeEeeccceeeeeehhhhhhhHHHHHhhcCCCCCC----CCCCchHHHHHHHH
Confidence 33322 234677888899999999999886553332221 12456667777776
No 4
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-57 Score=457.84 Aligned_cols=385 Identities=25% Similarity=0.420 Sum_probs=317.8
Q ss_pred CeEEeeeceecCCCcccCCCeEeeChHHHHHHhhhh-hHHHHHHhhcchhHHHHhhhccCCCCchhhhhhHHHHHHHHHh
Q 008250 1 MALQFRTAFIAPSSRVFGRGELVIDPAQIAKRYMRR-YFIIDFLAVLPLPQIVVWRFLLRSNGSDVLATKQALFFIVLFQ 79 (572)
Q Consensus 1 I~l~F~t~y~~~~~~~~~~g~lV~d~~~I~~~Ylk~-~F~~Dlis~lP~~~i~~~~~~~~~~~~~~~~~~~~Lrl~~l~~ 79 (572)
|++++||||++ +|.+|.|.++..+||..+ .|.+|++|++|++++.+|.. +. ...|
T Consensus 46 i~v~~R~gyle-------qGllV~~~~Kl~~hY~~s~~f~lD~l~liP~D~l~~~~~------~~-----~~~r------ 101 (536)
T KOG0500|consen 46 IIVRSRTGYLE-------QGLLVKDTSKLRKHYVHSTQFKLDVLSLIPLDLLLFKDG------SA-----SLER------ 101 (536)
T ss_pred HHHHHhhhhHh-------cCeeehhhHHHHHHHHHhhhhhhhhhhhcchhHHhhcCC------cc-----hHHH------
Confidence 46788999988 599999999999999988 89999999999999987521 11 1223
Q ss_pred hhhHHHHhhchhhhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccchhHHHHhccCCCCCcccceecCC
Q 008250 80 YFPRFFRILPLTSELKRTAGVFAETAWAGAAYYLLLY-MLASHVVGALWYLLALERNDTCWRKACSVTANCTKDFLYCGN 158 (572)
Q Consensus 80 ~l~rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~ll~~-~l~~H~~ac~wy~~~~~~~~~cw~~~c~~~~~c~~~y~~~~~ 158 (572)
+.|++|++|++.-+.++.+-.... -+..+.+++.+ +++.||.||+||+++...
T Consensus 102 -~nRllk~yRl~~F~~rTetrT~~P-n~fri~~lv~~~~ilfHWNaClYf~iS~~~------------------------ 155 (536)
T KOG0500|consen 102 -LNRLLKIYRLFEFFDRTETRTTYP-NAFRISKLVHYCLILFHWNACLYFLISKAI------------------------ 155 (536)
T ss_pred -HHHHHHHHHHHHHHHHhccccCCc-hHHHHHHHHHHHHHHHHHhhHHHHhhhHhc------------------------
Confidence 345555555555555544321111 12224555555 468999999999998421
Q ss_pred CCCcccccccccchhcccccCCCCCCCCCCCccchhhhhhcCcccchhhHHHHHHHHHHHHHhhhcccccccccCCchhH
Q 008250 159 QDMTGYAAWHDISNTTLESKCSADEDDPPFDFGIYSQALSSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLQTSTFPGEV 238 (572)
Q Consensus 159 ~~~~~~~~W~~~~~~~l~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~Y~~slywa~~tlttvGygdi~~~~~~E~ 238 (572)
+.+.++|+.. +-.++.|.. .. ..++..+|++|+||+..||||+|.- -+|.+..|.
T Consensus 156 --g~~~d~wvY~-----------~i~d~~~~~----------c~-~~n~~ReY~~S~YWStLTlTTiGe~-P~P~t~~ey 210 (536)
T KOG0500|consen 156 --GFTTDDWVYP-----------KINDPEFAT----------CD-AGNLTREYLYSLYWSTLTLTTIGEQ-PPPVTSSEY 210 (536)
T ss_pred --CccccccccC-----------CccCccccc----------cc-hhHHHHHHHHHHHHHhhhhhhccCC-CCCCcCchh
Confidence 2445668321 111121110 00 2468999999999999999999953 357888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCChhhhhh
Q 008250 239 IFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGVDEENLVQ 318 (572)
Q Consensus 239 ~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~ 318 (572)
+|.|+=.++|+++||.++|++++++.+++....+|+.+|+.+++||+.|++|..++.||.+||.|.|.+++-.||+++++
T Consensus 211 ~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~ 290 (536)
T KOG0500|consen 211 AFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLK 290 (536)
T ss_pred hHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred cCChhHHHHHHHHHHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCcee
Q 008250 319 SLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSG 398 (572)
Q Consensus 319 ~Lp~~Lr~~i~~~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~ 398 (572)
.||+.|+.+|+.+++.+.++++++|..+.+.++.++..+++++.|.|||+|+++||.+++||+|.+|.+++...++++.
T Consensus 291 ~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~- 369 (536)
T KOG0500|consen 291 LLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTV- 369 (536)
T ss_pred hCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcEE-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988666654
Q ss_pred eeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHH
Q 008250 399 FFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQ 467 (572)
Q Consensus 399 ~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~ 467 (572)
...+++|++|||.+++ +..+. .+..+|+++++++..+++++|+++|+-+++++||+-+..+.+
T Consensus 370 ---~~~L~~G~~FGEisIl-ni~g~--~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~ 432 (536)
T KOG0500|consen 370 ---FVTLKAGSVFGEISIL-NIKGN--KNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEE 432 (536)
T ss_pred ---EEEecCCceeeeeEEE-EEcCc--ccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHH
Confidence 5799999999999985 34432 345579999999999999999999999999999986665553
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3e-48 Score=395.69 Aligned_cols=357 Identities=22% Similarity=0.388 Sum_probs=296.9
Q ss_pred cccCCCeEeeChHHHHHHhhhh-hHHHHHHhhcchhHHHHhhhccCCCCchhhhhhHHHHHHHHHhhhhHHHHhhchhhh
Q 008250 15 RVFGRGELVIDPAQIAKRYMRR-YFIIDFLAVLPLPQIVVWRFLLRSNGSDVLATKQALFFIVLFQYFPRFFRILPLTSE 93 (572)
Q Consensus 15 ~~~~~g~lV~d~~~I~~~Ylk~-~F~~Dlis~lP~~~i~~~~~~~~~~~~~~~~~~~~Lrl~~l~~~l~rl~ri~~l~~~ 93 (572)
++..+|.+|.|.+...+||+++ .|-+|++|+||+++++.++- ... ++| ++|++++..++..
T Consensus 286 ~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G-----~~p------~wR-------~~R~lK~~sF~e~ 347 (815)
T KOG0499|consen 286 QFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFG-----FNP------MWR-------ANRMLKYTSFFEF 347 (815)
T ss_pred eeeeCceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhc-----cch------hhh-------hhhHHHHHHHHHH
Confidence 3444699999999999999998 89999999999999876431 112 333 3333333332222
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccchhHHHHhccCCCCCcccceecCCCCCcccccccccch
Q 008250 94 LKRTAGVFAETAWAGAAYYLLLYM-LASHVVGALWYLLALERNDTCWRKACSVTANCTKDFLYCGNQDMTGYAAWHDISN 172 (572)
Q Consensus 94 i~~~~~~~~~~~~~~~~~~ll~~~-l~~H~~ac~wy~~~~~~~~~cw~~~c~~~~~c~~~y~~~~~~~~~~~~~W~~~~~ 172 (572)
......++.+ +++..+...+.|| ..+|+.+|+||+.+- |- +.+.+-|+.
T Consensus 348 ~~~Le~i~s~-~y~~RV~rT~~YmlyilHinacvYY~~Sa--------------------yq------glG~~rWVy--- 397 (815)
T KOG0499|consen 348 NHHLESIMSK-AYIYRVIRTTGYLLYILHINACVYYWASA--------------------YQ------GLGTTRWVY--- 397 (815)
T ss_pred HHHHHHHhcc-hhhhhhHHHHHHHHHHHhhhHHHHHHHHh--------------------hc------ccccceeEE---
Confidence 2222222222 2232333334444 478999999999873 11 245677821
Q ss_pred hcccccCCCCCCCCCCCccchhhhhhcCcccchhhHHHHHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHH
Q 008250 173 TTLESKCSADEDDPPFDFGIYSQALSSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILF 252 (572)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~f 252 (572)
..-...|++|+|||+.|++|+| |.-.|.+.+|++|..+--+.|+++|
T Consensus 398 --------------------------------dg~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvF 444 (815)
T KOG0499|consen 398 --------------------------------DGEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVF 444 (815)
T ss_pred --------------------------------cCCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHH
Confidence 1123469999999999999999 7788999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCChhhhhhcCChhHHHHHHHHH
Q 008250 253 ALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGVDEENLVQSLPKDLRRDIKRHL 332 (572)
Q Consensus 253 a~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~~ 332 (572)
|.+||.|-.++...+..+++||..|++.-.||+.-++|.+.|.||+.+|+|.|+.++..||.+++..||..||-+++..+
T Consensus 445 slliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V 524 (815)
T KOG0499|consen 445 SLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDV 524 (815)
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 333 CLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 333 ~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
+...+.++.+|++++.+.+..+..+++.+.|.|||+|++.||++.+||+|..|.|.+....+|+.. +..+.+|++||
T Consensus 525 ~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~V---l~tL~~GsVFG 601 (815)
T KOG0499|consen 525 NYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTKV---LVTLKAGSVFG 601 (815)
T ss_pred ehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCCEE---EEEecccceee
Confidence 999999999999999999999999999999999999999999999999999999999876666643 68999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHH
Q 008250 413 EELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRL 461 (572)
Q Consensus 413 e~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l 461 (572)
|++++ +..+. .+|+++|+|-..|.+++|+++|+.+++..||+-
T Consensus 602 EISLL-aigG~-----nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~s 644 (815)
T KOG0499|consen 602 EISLL-AIGGG-----NRRTANVVAHGFANLFVLDKKDLNEILVHYPDS 644 (815)
T ss_pred eeeee-eecCC-----CccchhhhhcccceeeEecHhHHHHHHHhCccH
Confidence 99985 33222 258999999999999999999999999999963
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.66 E-value=1.4e-15 Score=149.91 Aligned_cols=131 Identities=18% Similarity=0.214 Sum_probs=115.3
Q ss_pred HHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeech
Q 008250 334 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGE 413 (572)
Q Consensus 334 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 413 (572)
.+.++.+++|..++++.++.+....+.+.|++|+.|+++|++++.+|+|.+|.++++...+|++.+ +.++.+|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~--i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETT--LAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEE--EEEeCCCchhhh
Confidence 457899999999999999999999999999999999999999999999999999998877777777 789999999999
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 008250 414 ELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQ 475 (572)
Q Consensus 414 ~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r~~s~ 475 (572)
.+++ ... ++..+++|+++|+++.+++++|.+++.++|.+....++...+.+..
T Consensus 84 ~~~~---~~~------~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~ 136 (236)
T PRK09392 84 AAVV---LDA------PYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRG 136 (236)
T ss_pred HHHh---CCC------CCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 8763 222 2678999999999999999999999999999888777665544333
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.59 E-value=2.4e-14 Score=138.52 Aligned_cols=116 Identities=15% Similarity=0.265 Sum_probs=100.6
Q ss_pred ccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCeechhhhhhhcCC
Q 008250 344 ENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCGEELLTWALDP 422 (572)
Q Consensus 344 ~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~ 422 (572)
..++++.++.+...++.+.|+||++|+.+|++++.+|||.+|.++++..+ +|++.+ +.++.+|++||+..++ .+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~---~~ 80 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF---EE 80 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehhhc---cC
Confidence 46899999999999999999999999999999999999999999998654 578877 7899999999998874 21
Q ss_pred CCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHH
Q 008250 423 KSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHT 469 (572)
Q Consensus 423 ~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~ 469 (572)
. +++..+++|.++|+++.+++++|.+++.++|++....++..
T Consensus 81 ~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~ 122 (211)
T PRK11753 81 G-----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQM 122 (211)
T ss_pred C-----CCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHH
Confidence 1 13568899999999999999999999999998876554443
No 8
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.48 E-value=2.8e-13 Score=132.59 Aligned_cols=113 Identities=20% Similarity=0.271 Sum_probs=94.6
Q ss_pred CHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCeechhhhhhhcCCCCC
Q 008250 347 DERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCGEELLTWALDPKSG 425 (572)
Q Consensus 347 ~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~ 425 (572)
.+-+..+|....+.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++.||++||+.+++ ...
T Consensus 20 ~~~~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~--~~~~~~g~~~G~~~~~---~~~-- 92 (226)
T PRK10402 20 KDCFSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSL--IDFFAAPCFIGEIELI---DKD-- 92 (226)
T ss_pred hhcCCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEee--eeecCCCCeEEeehhh---cCC--
Confidence 33344567788899999999999999999999999999999998754 588877 7899999999998853 222
Q ss_pred CCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHH
Q 008250 426 VNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTF 470 (572)
Q Consensus 426 ~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~ 470 (572)
+++.+++|+++|+++.+++++|.+++.++|.+....++...
T Consensus 93 ----~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~ 133 (226)
T PRK10402 93 ----HETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFLS 133 (226)
T ss_pred ----CCCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHH
Confidence 26789999999999999999999999999987776554443
No 9
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.48 E-value=1e-12 Score=129.34 Aligned_cols=123 Identities=16% Similarity=0.240 Sum_probs=102.4
Q ss_pred hhcCcCCccCCHHHHHHHHhccE-EEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCeechh
Q 008250 337 VRRVPLFENMDERLLDAICERLK-PCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCGEE 414 (572)
Q Consensus 337 l~~v~~F~~l~~~~l~~l~~~l~-~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~ 414 (572)
+++.+.|..+++++++.|..... .+.|+||+.|+++||+++.+|+|.+|.|+++..+ +|++.+ +.++.+|++||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i--~~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQI--TGFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEE--EEeccCCceeccc
Confidence 45556666799999999998876 4689999999999999999999999999998764 588877 7888999999986
Q ss_pred hhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008250 415 LLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFR 471 (572)
Q Consensus 415 ~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r 471 (572)
.+ ... .+..+++|+++|+++.|++++|++++.++|.+....++...+
T Consensus 93 ~~---~~~-------~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~ 139 (235)
T PRK11161 93 AI---GSG-------QHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSG 139 (235)
T ss_pred cc---cCC-------CCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHH
Confidence 54 111 134589999999999999999999999999987766655443
No 10
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.45 E-value=1.4e-12 Score=112.03 Aligned_cols=111 Identities=30% Similarity=0.550 Sum_probs=97.8
Q ss_pred CCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCeechhhhhhhc
Q 008250 342 LFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCGEELLTWAL 420 (572)
Q Consensus 342 ~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~~ 420 (572)
+|..++++.++.++..++.+.+.+|++|+.+|++.+.+|+|.+|.++++..+ +|++.+ +..+.+|++||+..++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~--- 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQI--VGFLGPGDLFGELALL--- 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEecCCccCcChHHHh---
Confidence 4788999999999999999999999999999999999999999999987654 466666 7899999999999864
Q ss_pred CCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHH
Q 008250 421 DPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHS 463 (572)
Q Consensus 421 ~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~ 463 (572)
... ++..+++|.++|+++.|+.++|.+++.++|.+..
T Consensus 76 ~~~------~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 112 (115)
T cd00038 76 GNG------PRSATVRALTDSELLVLPRSDFRRLLQEYPELAR 112 (115)
T ss_pred cCC------CCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHH
Confidence 222 2678999999999999999999999999997654
No 11
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.43 E-value=1e-12 Score=135.41 Aligned_cols=60 Identities=17% Similarity=0.289 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 008250 212 CYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLE 271 (572)
Q Consensus 212 ~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~ 271 (572)
-.|+|||+.|||||||||++|.|...++.+..++++|+++.|+-|..|.+-+.......+
T Consensus 379 Pa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k 438 (477)
T KOG3713|consen 379 PAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELK 438 (477)
T ss_pred cchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHH
Confidence 358999999999999999999999999999999999999999987766666654444333
No 12
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.40 E-value=7.3e-12 Score=108.07 Aligned_cols=115 Identities=24% Similarity=0.387 Sum_probs=98.6
Q ss_pred CCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCeechhhhhhhc
Q 008250 342 LFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCGEELLTWAL 420 (572)
Q Consensus 342 ~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~~ 420 (572)
+|.+++++.++.++..++.+.+++|++|+++|++.+.+|||.+|.++++..+ +|++.+ +..+.+|++||+..++ ..
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~-~~ 77 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQI--LGILGPGDFFGELALL-TN 77 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEE--EEeecCCceechhhhc-cC
Confidence 4788999999999999999999999999999999999999999999998764 466666 7899999999999873 11
Q ss_pred CCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHH
Q 008250 421 DPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQ 465 (572)
Q Consensus 421 ~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~ 465 (572)
.+. ++..+++|.++|+++.++.+++.....++|.+..+.
T Consensus 78 ~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 116 (120)
T smart00100 78 SRR------AASATAVALELATLLRIDFRDFLQLLQENPQLLLEL 116 (120)
T ss_pred CCc------ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHH
Confidence 122 367899999999999999999999999988765433
No 13
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.37 E-value=3.7e-12 Score=105.15 Aligned_cols=90 Identities=27% Similarity=0.362 Sum_probs=78.4
Q ss_pred EEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecC-CceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEe
Q 008250 360 PCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDG-GRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRAL 438 (572)
Q Consensus 360 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~-g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Al 438 (572)
.+.|+||++|+++|++++++|||++|.++++..++ |+..+ +..+.+|++||+..++... ++..+++|.
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~--~~~~~~g~~~g~~~~~~~~---------~~~~~~~a~ 69 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQI--IFFLGPGDIFGEIELLTGK---------PSPFTVIAL 69 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEE--EEEEETTEEESGHHHHHTS---------BBSSEEEES
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeee--ecceeeeccccceeecCCC---------ccEEEEEEc
Confidence 36899999999999999999999999999987665 55455 7899999999999885322 267999999
Q ss_pred ccceeeeeCHHHHHHHHHHhHH
Q 008250 439 KEVEAFALMAEELKFVASQFRR 460 (572)
Q Consensus 439 t~~~l~~l~~~~~~~l~~~~p~ 460 (572)
++|+++.|++++|.++++++|+
T Consensus 70 ~~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 70 TDSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp SSEEEEEEEHHHHHHHHHHSHH
T ss_pred cCEEEEEEeHHHHHHHHHhCcC
Confidence 9999999999999999999984
No 14
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.35 E-value=4.4e-11 Score=115.15 Aligned_cols=122 Identities=22% Similarity=0.349 Sum_probs=102.4
Q ss_pred cCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCeechhhhh
Q 008250 339 RVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCGEELLT 417 (572)
Q Consensus 339 ~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~ 417 (572)
..+.|..++.+....+......+.+++|++|+++||+++.+|+|.+|.++++... +|++.+ +.++++|++||+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~fg~~~l~ 81 (214)
T COG0664 4 ENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREII--LGFLGPGDFFGELALL 81 (214)
T ss_pred cccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEE--EEEecCCchhhhHHHh
Confidence 4456666777788887789999999999999999999999999999999998755 478877 7899999999999974
Q ss_pred hhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008250 418 WALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFR 471 (572)
Q Consensus 418 ~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r 471 (572)
. .. +++.+++|+++|+++.+++++|.+++.+.|.+...+++...+
T Consensus 82 ~---~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~ 126 (214)
T COG0664 82 G---GD------PRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLAR 126 (214)
T ss_pred c---CC------CccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 2 11 267899999999999999999999987788777766655444
No 15
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.33 E-value=1.3e-11 Score=117.55 Aligned_cols=127 Identities=17% Similarity=0.121 Sum_probs=94.6
Q ss_pred CcEEEccCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEeccceee
Q 008250 366 STYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAF 444 (572)
Q Consensus 366 ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~ 444 (572)
|+.|+++||+++.+|+|.+|.|+++.. .+|++.+ +.++.+|++||+..++ ...+ .++..+++|+++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~--l~~~~~g~~~G~~~~~---~~~~----~~~~~~~~A~~~~~v~ 71 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEIT--VALLRENSVFGVLSLI---TGHR----SDRFYHAVAFTRVELL 71 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEee--eEEccCCCEeeeeeec---cCCC----CccceEEEEecceEEE
Confidence 789999999999999999999999864 4588877 7899999999998763 2111 1234779999999999
Q ss_pred eeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008250 445 ALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKKMEQTRKEE 505 (572)
Q Consensus 445 ~l~~~~~~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~e 505 (572)
.+++++|++++.++|.+....++...+ ..................+|....++..++
T Consensus 72 ~i~~~~~~~l~~~~p~l~~~~~~~l~~----~l~~~~~~~~~l~~~~~~~Rla~~L~~l~~ 128 (193)
T TIGR03697 72 AVPIEQVEKAIEEDPDLSMLLLQGLSS----RILQTEMMIETLAHRDMGSRLVSFLLILCR 128 (193)
T ss_pred EeeHHHHHHHHHHChHHHHHHHHHHHH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999998877766544 222223333333444555566655554443
No 16
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.33 E-value=6.9e-12 Score=123.06 Aligned_cols=105 Identities=17% Similarity=0.141 Sum_probs=89.7
Q ss_pred HHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCc
Q 008250 353 AICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSS 431 (572)
Q Consensus 353 ~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s 431 (572)
.++.....+.|+||++|+.+||+++.+|||.+|.|+++..+ +|++.+ +.++.+|++||+.. .. ++
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i--~~~~~~Gd~fG~~~----~~--------~~ 98 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQI--GAFHLPGDVFGLES----GS--------TH 98 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCceecccC----CC--------cC
Confidence 45666789999999999999999999999999999998754 577777 78899999999642 11 25
Q ss_pred ccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008250 432 TRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFR 471 (572)
Q Consensus 432 ~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r 471 (572)
..+++|+++|+++.+++++|++++.++|.+....++.+.+
T Consensus 99 ~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~ 138 (230)
T PRK09391 99 RFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAG 138 (230)
T ss_pred CeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHH
Confidence 6899999999999999999999999999988877766554
No 17
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.25 E-value=7.5e-11 Score=113.21 Aligned_cols=127 Identities=16% Similarity=0.189 Sum_probs=92.6
Q ss_pred ccEEEEeCCCcEEEccCC--CCCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCccc
Q 008250 357 RLKPCLFTDSTYIVREGD--PVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTR 433 (572)
Q Consensus 357 ~l~~~~~~~ge~I~~~Gd--~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~ 433 (572)
.++.+.|+||++|+++|| +++.+|+|.+|.|+++..+ +|++.+ +.++.+||+||+..++ .. +++.
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~--l~~~~~Gd~~G~~~~~--~~--------~~~~ 72 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALT--LRYVRPGEYFGEEALA--GA--------ERAY 72 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCeechHHhc--CC--------CCCc
Confidence 467889999999999999 7799999999999998754 688888 8899999999996542 12 2567
Q ss_pred EEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008250 434 TVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKKMEQTRKEE 505 (572)
Q Consensus 434 tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~e 505 (572)
+++|+++|+++.|++++| .|++...++++..+..+... +.+.........+|....++..++
T Consensus 73 ~~~A~~~~~v~~i~~~~~------~~~~~~~l~~~l~~~~~~~~----~~~~~l~~~~~~~Rla~~Ll~l~~ 134 (202)
T PRK13918 73 FAEAVTDSRIDVLNPALM------SAEDNLVLTQHLVRTLARAY----ESIYRLVGQRLKNRIAAALLELSD 134 (202)
T ss_pred eEEEcCceEEEEEEHHHc------ChhhHHHHHHHHHHHHHHHH----HHHHHHHhCchHHHHHHHHHHHHH
Confidence 899999999999999987 45555555555554333322 222233444555666665555444
No 18
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.22 E-value=7.2e-11 Score=112.16 Aligned_cols=169 Identities=20% Similarity=0.356 Sum_probs=101.3
Q ss_pred HHHhhhh-hHHHHHHhhcchhHHHHhhhccCCCCchhhhhhHHHHHHHHHhhhhHHHHhhchhhhhhhhhhhHHHHHHHH
Q 008250 30 AKRYMRR-YFIIDFLAVLPLPQIVVWRFLLRSNGSDVLATKQALFFIVLFQYFPRFFRILPLTSELKRTAGVFAETAWAG 108 (572)
Q Consensus 30 ~~~Ylk~-~F~~Dlis~lP~~~i~~~~~~~~~~~~~~~~~~~~Lrl~~l~~~l~rl~ri~~l~~~i~~~~~~~~~~~~~~ 108 (572)
+++|+++ |.++|+++++|....+.... ....+.....+.+|+++ +.|++|+.+..+.+.+..+... .....
T Consensus 25 ~~~y~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~----~~R~l~~~~~~~~~~~~~~~~~-~~~~~ 96 (200)
T PF00520_consen 25 RRRYFRSWWNWFDFISVIPSIVSVILRS---YGSASAQSLLRIFRLLR----LLRLLRLLRRFRSLRRLLRALI-RSFPD 96 (200)
T ss_dssp -GCCCCSHHHHHHHHHHHHHCCHHCCHC---SS--HHCHCHHHHHHHH----HHHHHHHHHTTTSHHHHHHHHH-HHHHH
T ss_pred HHHHhcChhhcccccccccccccccccc---cccccccceEEEEEeec----cccccccccccccccccccccc-ccccc
Confidence 6889987 78899999999965543211 11111001222333222 3355555555444444433222 12223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHhccCCCCCcccceecCCCCCcccccccccchhcccccCCCCCCCCCC
Q 008250 109 AAYYLLLYMLASHVVGALWYLLALERNDTCWRKACSVTANCTKDFLYCGNQDMTGYAAWHDISNTTLESKCSADEDDPPF 188 (572)
Q Consensus 109 ~~~~ll~~~l~~H~~ac~wy~~~~~~~~~cw~~~c~~~~~c~~~y~~~~~~~~~~~~~W~~~~~~~l~~~~~~~~~~~~~ 188 (572)
....+++++++.|+.||+++.+.......|+.. .+ - +.+
T Consensus 97 l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~------------------------~~-------~-------~~~--- 135 (200)
T PF00520_consen 97 LFKFILLLFIVLLFFACIGYQLFGGSDNSCCDP------------------------TW-------D-------SEN--- 135 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTS-------------------------------S-------S-------------
T ss_pred ccccccccccccccccchhheeccccccccccc------------------------cc-------c-------ccc---
Confidence 344555667789999999998874432222100 00 0 000
Q ss_pred CccchhhhhhcCcccchhhHHHHHHHHHHHHHhhhcccccccccC-----CchhHHHH-HHHHHHHHHHHHHHHHHH
Q 008250 189 DFGIYSQALSSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLQTST-----FPGEVIFS-IALAIFGLILFALLIGNM 259 (572)
Q Consensus 189 ~~gi~~~~~~~~~~~~~~~~~~Y~~slywa~~tlttvGygdi~~~-----~~~E~~~~-i~~~i~G~~~fa~lig~~ 259 (572)
.....+..+.|..|+||+++++|+.|+||..+. +..+.++. +++.+++.++++.++|.|
T Consensus 136 ------------~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 136 ------------DIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp -------------SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------ccccccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 011345667899999999999999999999886 88899998 666777778899999875
No 19
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.18 E-value=3.7e-11 Score=123.67 Aligned_cols=131 Identities=27% Similarity=0.431 Sum_probs=111.5
Q ss_pred HHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCee
Q 008250 332 LCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFC 411 (572)
Q Consensus 332 ~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 411 (572)
-+.++++++|+|.+++++.+..|+..++...|..|++|+++|+.++.+|+|.+|.|.+...+++.+.-..+..+..||+|
T Consensus 269 ~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~F 348 (732)
T KOG0614|consen 269 QYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYF 348 (732)
T ss_pred HHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchh
Confidence 45688999999999999999999999999999999999999999999999999999998777653333337899999999
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEecc-ceeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008250 412 GEELLTWALDPKSGVNLPSSTRTVRALKE-VEAFALMAEELKFVASQFRRLHSRQVQHTFR 471 (572)
Q Consensus 412 Ge~~l~~~~~~~~~~~l~~s~~tv~Alt~-~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r 471 (572)
||-+++ .+. .|++++.|..+ ++++.|+++.|.+++....++..+......|
T Consensus 349 GE~al~--~ed-------vRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~~D~~r 400 (732)
T KOG0614|consen 349 GERALL--GED-------VRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDYGDEER 400 (732)
T ss_pred hHHHhh--ccC-------ccchhhhccCCCceEEEecHHHHHHhcccHHHhhhhhccchhh
Confidence 999974 222 26799999987 9999999999999999888777655554443
No 20
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.17 E-value=2.6e-10 Score=121.54 Aligned_cols=113 Identities=26% Similarity=0.395 Sum_probs=98.0
Q ss_pred HHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeech
Q 008250 334 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGE 413 (572)
Q Consensus 334 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 413 (572)
.++++++++|++++++.++.|+..++.+.|++|++|+++||.++.+|+|.+|.|+++..+.+.+.+ +..+++|++||+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~--l~~l~~Gd~fG~ 84 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRP--EFLLKRYDYFGY 84 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEE--EEEeCCCCEeeh
Confidence 456789999999999999999999999999999999999999999999999999998766533555 788999999997
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhH
Q 008250 414 ELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFR 459 (572)
Q Consensus 414 ~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p 459 (572)
. + . .. ++..+++|.++|+++.|++++|..+....+
T Consensus 85 ~-l--~--~~------~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 85 G-L--S--GS------VHSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred h-h--C--CC------CcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 4 3 1 22 267899999999999999999988876654
No 21
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.14 E-value=6.5e-10 Score=116.27 Aligned_cols=116 Identities=19% Similarity=0.287 Sum_probs=102.7
Q ss_pred HHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeech
Q 008250 334 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGE 413 (572)
Q Consensus 334 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 413 (572)
.+++.+.|.|..++++.++.|...+....|.|||.|+..|.+.+++|+|.+|.|+++.. +|+ . +..+.+||.||-
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~-~g~--v--~~~~~~gdlFg~ 80 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSD-GGE--V--LDRLAAGDLFGF 80 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcC-CCe--e--eeeeccCccccc
Confidence 57889999999999999999999999999999999999999999999999999998864 344 2 689999999999
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHH
Q 008250 414 ELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHS 463 (572)
Q Consensus 414 ~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~ 463 (572)
.+++.... ...++.|.+|+.+|.|+++.|.+++.++|.++.
T Consensus 81 ~~l~~~~~---------~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ 121 (610)
T COG2905 81 SSLFTELN---------KQRYMAAEEDSLCYLLPKSVFMQLMEENPEFAD 121 (610)
T ss_pred hhhcccCC---------CcceeEeeccceEEecCHHHHHHHHHhCcHHHH
Confidence 98753332 235788889999999999999999999998766
No 22
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.11 E-value=1e-10 Score=120.44 Aligned_cols=125 Identities=20% Similarity=0.360 Sum_probs=107.6
Q ss_pred HHHHHHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCC
Q 008250 328 IKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKE 407 (572)
Q Consensus 328 i~~~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~ 407 (572)
-...+..+.++.-.+.++++.+++.++...|-++.|.+|++|++|||+++++|.+.+|.+.+.. +|+- +..+++
T Consensus 147 ~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~--~g~l----l~~m~~ 220 (732)
T KOG0614|consen 147 GAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR--EGKL----LGKMGA 220 (732)
T ss_pred cHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee--CCee----eeccCC
Confidence 3456667788888889999999999999999999999999999999999999999999999875 3432 789999
Q ss_pred CCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHH
Q 008250 408 GDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQ 467 (572)
Q Consensus 408 Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~ 467 (572)
|..|||.+++++. +|+++|+|+|+|.+|+|+++-|+.++..--.-+.....
T Consensus 221 gtvFGELAILync---------tRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~ 271 (732)
T KOG0614|consen 221 GTVFGELAILYNC---------TRTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYM 271 (732)
T ss_pred chhhhHHHHHhCC---------cchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999997655 37899999999999999999999999876544443333
No 23
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.03 E-value=6e-10 Score=110.27 Aligned_cols=113 Identities=18% Similarity=0.223 Sum_probs=98.4
Q ss_pred HHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 333 CLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 333 ~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
..+.+++.-+|++++++.+..+...+.++.++.|+.|+++|+.++.+|+|.+|.+.++.. |+- +..+.+|..||
T Consensus 120 L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~--~~~----v~~~~~g~sFG 193 (368)
T KOG1113|consen 120 LEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN--GTY----VTTYSPGGSFG 193 (368)
T ss_pred HHHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC--CeE----EeeeCCCCchh
Confidence 356778888999999999999999999999999999999999999999999999999875 332 67899999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHH
Q 008250 413 EELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRR 460 (572)
Q Consensus 413 e~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~ 460 (572)
|.++.++ . ++.+|+.|.+++.+|.|++..|..++-....
T Consensus 194 ElALmyn-~--------PRaATv~a~t~~klWgldr~SFrrIi~~s~~ 232 (368)
T KOG1113|consen 194 ELALMYN-P--------PRAATVVAKSLKKLWGLDRTSFRRIIMKSCI 232 (368)
T ss_pred hhHhhhC-C--------CcccceeeccccceEEEeeceeEEEeeccch
Confidence 9998532 2 4789999999999999999999877655443
No 24
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.98 E-value=2.8e-10 Score=112.05 Aligned_cols=51 Identities=24% Similarity=0.436 Sum_probs=44.7
Q ss_pred HHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008250 213 YCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYL 263 (572)
Q Consensus 213 ~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l 263 (572)
.+||||+.|||||||||..|.|++.++...++.|.|++-.|.-+..+.+-+
T Consensus 396 daFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNF 446 (507)
T KOG1545|consen 396 DAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNF 446 (507)
T ss_pred ccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecc
Confidence 489999999999999999999999999999999999998887665544433
No 25
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.98 E-value=4.4e-09 Score=84.88 Aligned_cols=54 Identities=26% Similarity=0.551 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008250 211 YCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQ 264 (572)
Q Consensus 211 Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~ 264 (572)
|..++||++.|+||+||||+.|.+..+++++++.+++|+.++++.++.+++.+.
T Consensus 25 ~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 25 FIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 678999999999999999999999999999999999999999999999998874
No 26
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.85 E-value=2.2e-08 Score=104.07 Aligned_cols=88 Identities=25% Similarity=0.432 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhhc
Q 008250 208 FSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHR 287 (572)
Q Consensus 208 ~~~Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~ 287 (572)
+.-|..|+||++.|+||+||||.+|.|...++.+.++.++|+.+||.--|.+++-+.-+-. ++.++ ++|-+.+
T Consensus 267 F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQ--eq~RQ-----KHf~rrr 339 (654)
T KOG1419|consen 267 FPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQ--EQHRQ-----KHFNRRR 339 (654)
T ss_pred chhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhH--HHHHH-----HHHHhhc
Confidence 4568999999999999999999999999999999999999999999988888877643222 22232 3667778
Q ss_pred CCChhHHHHHHHHHH
Q 008250 288 LLPPDLRERVRRYDQ 302 (572)
Q Consensus 288 ~lp~~L~~rv~~y~~ 302 (572)
+.-..|.+-..+||.
T Consensus 340 ~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 340 NPAASLIQCAWRYYA 354 (654)
T ss_pred chHHHHHHHHHHHHh
Confidence 888888888888774
No 27
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.80 E-value=6.8e-10 Score=110.17 Aligned_cols=52 Identities=21% Similarity=0.439 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 008250 212 CYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFAL----LIGNMQTYL 263 (572)
Q Consensus 212 ~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~----lig~~~~~l 263 (572)
-.+||+.+.||||+||||..|.++..++|..++.+.|+++.|. +++|++.+-
T Consensus 358 PaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIY 413 (632)
T KOG4390|consen 358 PAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIY 413 (632)
T ss_pred cHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHH
Confidence 4589999999999999999999999999999999999998877 456666655
No 28
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.71 E-value=2.4e-08 Score=99.15 Aligned_cols=117 Identities=21% Similarity=0.330 Sum_probs=102.7
Q ss_pred HHHHHHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCC
Q 008250 328 IKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKE 407 (572)
Q Consensus 328 i~~~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~ 407 (572)
..+.|+.++|+.+|++..++..+...++..+.++.|++|+.|+.+|+.++.+|+|.+|.|.+....+| + .+ .++.
T Consensus 233 kkrkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~---v-~v-kl~~ 307 (368)
T KOG1113|consen 233 KKRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG---V-EV-KLKK 307 (368)
T ss_pred hhhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC---e-EE-Eech
Confidence 45678999999999999999999999999999999999999999999999999999999998654444 2 14 8999
Q ss_pred CCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHh
Q 008250 408 GDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQF 458 (572)
Q Consensus 408 Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~ 458 (572)
||+|||.+++.+. ++.+++.|.++..+..+++..|+.|+.--
T Consensus 308 ~dyfge~al~~~~---------pr~Atv~a~~~~kc~~~dk~~ferllgpc 349 (368)
T KOG1113|consen 308 GDYFGELALLKNL---------PRAATVVAKGRLKCAKLDKPRFERLLGPC 349 (368)
T ss_pred hhhcchHHHHhhc---------hhhceeeccCCceeeeeChHHHHHHhhHH
Confidence 9999999984322 26799999999999999999999998753
No 29
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.16 E-value=8.7e-07 Score=92.32 Aligned_cols=136 Identities=20% Similarity=0.252 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhhcC
Q 008250 209 SKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRL 288 (572)
Q Consensus 209 ~~Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~ 288 (572)
-.|..|+|+-+.||+||||||+...+...++|.+|+.+.|+.+||--+..+..++.+..+---+++..- --+|--
T Consensus 287 ltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~eh-----gkkhiv 361 (1103)
T KOG1420|consen 287 LTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEH-----GKKHIV 361 (1103)
T ss_pred chhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhc-----CCeeEE
Confidence 458999999999999999999999999999999999999999999999999998876544333332110 001111
Q ss_pred CChh-HHHHHHHHHHHHHHHhc-CCC-hhhhhhcCChhHHHHHHHHHHHHHhhcCcCCcc--CCHHHHH
Q 008250 289 LPPD-LRERVRRYDQYKWLETR-GVD-EENLVQSLPKDLRRDIKRHLCLALVRRVPLFEN--MDERLLD 352 (572)
Q Consensus 289 lp~~-L~~rv~~y~~~~w~~~~-~~~-e~~ll~~Lp~~Lr~~i~~~~~~~ll~~v~~F~~--l~~~~l~ 352 (572)
+=.+ ..+.|-+|++-...+.+ .++ |--+|...||+|.-+ .+++.-+.++.+|.+ |++-.+.
T Consensus 362 vcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqgtvmnp~dl~ 427 (1103)
T KOG1420|consen 362 VCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQGTVMNPHDLA 427 (1103)
T ss_pred EecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecccccChhhhh
Confidence 1111 23445555544434444 334 335688999988644 345556678888865 5554443
No 30
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.15 E-value=2.8e-05 Score=81.89 Aligned_cols=53 Identities=21% Similarity=0.395 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008250 211 YCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYL 263 (572)
Q Consensus 211 Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l 263 (572)
+..|+||++.|+||+||||+.|.+...++|+++++++|+.+|++.++.+...+
T Consensus 169 ~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 169 LSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred HHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57799999999999999999999999999999999999999999998876644
No 31
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.09 E-value=0.00012 Score=75.36 Aligned_cols=92 Identities=15% Similarity=0.184 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhh
Q 008250 207 FFSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHH 286 (572)
Q Consensus 207 ~~~~Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~ 286 (572)
....|+.++|....|..++||||+.|.|...+..+++..++|.++.|.+++.++--+.- ..--+.+++||-.
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLeL--------t~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLEL--------TKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999988765532 2222346777777
Q ss_pred cCCChhHHHHHHHHHHHHHH
Q 008250 287 RLLPPDLRERVRRYDQYKWL 306 (572)
Q Consensus 287 ~~lp~~L~~rv~~y~~~~w~ 306 (572)
.++-+++++-..+-++..|.
T Consensus 356 tqLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777666666665555
No 32
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.02 E-value=9.6e-06 Score=89.10 Aligned_cols=114 Identities=22% Similarity=0.328 Sum_probs=95.5
Q ss_pred HHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCC
Q 008250 349 RLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVN 427 (572)
Q Consensus 349 ~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~ 427 (572)
.++..+-..+....+.+|+.++++||.++++|+|+.|.+|.... .+|+..+ +..++.||.+|+.+.++ .++
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i--~~EygrGd~iG~~E~lt---~~~--- 570 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI--VGEYGRGDLIGEVEMLT---KQP--- 570 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh--hhhccCcceeehhHHhh---cCC---
Confidence 35556666788899999999999999999999999999998654 4455545 68899999999999743 332
Q ss_pred CCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008250 428 LPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFY 473 (572)
Q Consensus 428 l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r~~ 473 (572)
+..|+.|+.++++..|+..-|..+..+||.+-.++.+-.++.+
T Consensus 571 ---R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 571 ---RATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred ---ccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999998887777766655
No 33
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.71 E-value=0.00016 Score=74.30 Aligned_cols=57 Identities=18% Similarity=0.367 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhhhcccccc--cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008250 209 SKYCYCLWWGLQNLSTLGQGL--QTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQS 265 (572)
Q Consensus 209 ~~Y~~slywa~~tlttvGygd--i~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~ 265 (572)
..+..+|+|++.|+||+|||. ++|....-.++.++=+++|+++.|+++|.+-.-++.
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~sr 141 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSR 141 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 357889999999999999998 567777777888888999999999999988766643
No 34
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.50 E-value=0.00054 Score=75.80 Aligned_cols=112 Identities=15% Similarity=0.164 Sum_probs=88.2
Q ss_pred HHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecC-CceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCc
Q 008250 353 AICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDG-GRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSS 431 (572)
Q Consensus 353 ~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~-g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s 431 (572)
+++.+.+...+..|++|++.|++.+.+|.+.+|.+.++..++ |++.. +..+.+|+-|.....+..-.|. ...+..
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~l--lk~V~~G~~~tSllSiLd~l~~--~ps~~~ 185 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYL--LKTVPPGGSFTSLLSILDSLPG--FPSLSR 185 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceee--EeeccCCCchHhHHHHHHhccC--CCcccc
Confidence 344778888999999999999999999999999999887654 77777 7899999877765543322221 112346
Q ss_pred ccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHH
Q 008250 432 TRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQH 468 (572)
Q Consensus 432 ~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~ 468 (572)
+..++|.++|.+..++...|.++...||+-..+.+|-
T Consensus 186 ~i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQv 222 (1158)
T KOG2968|consen 186 TIAAKAATDCTVARIPYTSFRESFHKNPESSIRIIQV 222 (1158)
T ss_pred eeeeeeecCceEEEeccchhhhhhccChHHHHHHHHH
Confidence 7789999999999999999999999999755544443
No 35
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.0004 Score=74.20 Aligned_cols=59 Identities=19% Similarity=0.421 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008250 211 YCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIR 269 (572)
Q Consensus 211 Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~ 269 (572)
+..|+|++.+++||+|||++.|.|...++++|+..++|+-++..++++++..+...-..
T Consensus 116 f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~ 174 (433)
T KOG1418|consen 116 FSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRK 174 (433)
T ss_pred cchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 56699999999999999999999999999999999999999999999999998654443
No 36
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.35 E-value=0.0059 Score=57.88 Aligned_cols=96 Identities=10% Similarity=0.070 Sum_probs=72.9
Q ss_pred HHHHHHHhccEEEEeCCCcEE-EccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCC
Q 008250 349 RLLDAICERLKPCLFTDSTYI-VREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVN 427 (572)
Q Consensus 349 ~~l~~l~~~l~~~~~~~ge~I-~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~ 427 (572)
...+.+....++..+++|..+ .-.....+.++++.+|.+.+. ..+| .. +.+..+..+||-... ..+..
T Consensus 13 ~L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir-r~d~--ll--~~t~~aP~IlGl~~~---~~~~~--- 81 (207)
T PRK11832 13 KLDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR-REEN--VL--IGITQAPYIMGLADG---LMKND--- 81 (207)
T ss_pred HHHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE-ecCC--eE--EEeccCCeEeecccc---cCCCC---
Confidence 345566777788999999997 444444477999999999994 3333 23 678888899998664 22322
Q ss_pred CCCcccEEEEeccceeeeeCHHHHHHHHHHh
Q 008250 428 LPSSTRTVRALKEVEAFALMAEELKFVASQF 458 (572)
Q Consensus 428 l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~ 458 (572)
....++|.++|+++.++.+++.+++++.
T Consensus 82 ---~~~~l~ae~~c~~~~i~~~~~~~iie~~ 109 (207)
T PRK11832 82 ---IPYKLISEGNCTGYHLPAKQTITLIEQN 109 (207)
T ss_pred ---ceEEEEEcCccEEEEeeHHHHHHHHHHh
Confidence 3468999999999999999999999886
No 37
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.27 E-value=0.014 Score=51.98 Aligned_cols=109 Identities=16% Similarity=0.217 Sum_probs=83.9
Q ss_pred cCCHHHHHHHHhc-cEEEEeCCCcEEEccCC-CCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCC
Q 008250 345 NMDERLLDAICER-LKPCLFTDSTYIVREGD-PVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDP 422 (572)
Q Consensus 345 ~l~~~~l~~l~~~-l~~~~~~~ge~I~~~Gd-~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~ 422 (572)
+.+......|+.. .+...+.+|+.-.-||. +.+.+-++++|.+++... |+- +..+.|.+|....+.. +..+
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~--g~f----LH~I~p~qFlDSPEW~-s~~~ 86 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD--GRF----LHYIYPYQFLDSPEWE-SLRP 86 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC--CEe----eEeecccccccChhhh-cccc
Confidence 3677778888776 67789999999999986 778999999999998753 332 6778888888776653 2211
Q ss_pred CCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHH
Q 008250 423 KSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHS 463 (572)
Q Consensus 423 ~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~ 463 (572)
.. -..-..|+.|.++|..+..+++.++.++.+.|-+++
T Consensus 87 s~---~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~ 124 (153)
T PF04831_consen 87 SE---DDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAA 124 (153)
T ss_pred CC---CCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHH
Confidence 11 112357999999999999999999999999986544
No 38
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.41 E-value=0.018 Score=57.35 Aligned_cols=57 Identities=19% Similarity=0.336 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhcccccccccCCc-------hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008250 211 YCYCLWWGLQNLSTLGQGLQTSTFP-------GE-VIFSIALAIFGLILFALLIGNMQTYLQSLT 267 (572)
Q Consensus 211 Y~~slywa~~tlttvGygdi~~~~~-------~E-~~~~i~~~i~G~~~fa~lig~~~~~l~~~~ 267 (572)
|+.|+|+.+.|+||+|+||..+.-. .+ ..++.+.+++|+.+++-+++.+.-.+..++
T Consensus 187 yfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~ 251 (350)
T KOG4404|consen 187 YFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMN 251 (350)
T ss_pred hhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8889999999999999999875432 22 457777788999888887776665554443
No 39
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.60 E-value=0.002 Score=63.82 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHH
Q 008250 208 FSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFA 253 (572)
Q Consensus 208 ~~~Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa 253 (572)
-.++..||||+.+.+||+|||..+|.|++.++|+|+..++|+-+--
T Consensus 78 qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~l 123 (350)
T KOG4404|consen 78 QWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTL 123 (350)
T ss_pred ccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHH
Confidence 3467789999999999999999999999999999999999875543
No 40
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.56 E-value=0.022 Score=61.34 Aligned_cols=114 Identities=19% Similarity=0.319 Sum_probs=88.0
Q ss_pred HHHHHHhhcCcCCccCCHHHHHHHHhccEEE-EeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCC
Q 008250 331 HLCLALVRRVPLFENMDERLLDAICERLKPC-LFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGD 409 (572)
Q Consensus 331 ~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~-~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd 409 (572)
+...+++.++|.|.+|+-...++||..|... .-..|.+|+..|+.-+..+.|+.|+|++...++.+ ..+.-|+
T Consensus 277 eqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~------e~l~mGn 350 (1283)
T KOG3542|consen 277 EQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKR------EELKMGN 350 (1283)
T ss_pred HHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCce------EEeeccc
Confidence 3456888999999999999999999887644 45789999999999999999999999999877654 3567789
Q ss_pred eechhhhhhhcCCCCCCCCCCcccEE-EEeccceeeeeCHHHHHHHHHHhH
Q 008250 410 FCGEELLTWALDPKSGVNLPSSTRTV-RALKEVEAFALMAEELKFVASQFR 459 (572)
Q Consensus 410 ~fGe~~l~~~~~~~~~~~l~~s~~tv-~Alt~~~l~~l~~~~~~~l~~~~p 459 (572)
-||..-- .+.+. ..-.+ .-+.||+...+...|+-.++.+.-
T Consensus 351 SFG~~PT---~dkqy------m~G~mRTkVDDCqFVciaqqDycrIln~ve 392 (1283)
T KOG3542|consen 351 SFGAEPT---PDKQY------MIGEMRTKVDDCQFVCIAQQDYCRILNTVE 392 (1283)
T ss_pred ccCCCCC---cchhh------hhhhhheecccceEEEeehhhHHHHHHHHH
Confidence 9996542 11110 01112 346899999999999998887643
No 41
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=95.09 E-value=0.1 Score=53.39 Aligned_cols=59 Identities=19% Similarity=0.456 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhhcccccccccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008250 211 YCYCLWWGLQNLSTLGQGLQTST--FPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIR 269 (572)
Q Consensus 211 Y~~slywa~~tlttvGygdi~~~--~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~ 269 (572)
+..+|-|++-|=+|+|||--.++ -+.-++.-++=+|+|+++-|+++|.+-.-+..-.+|
T Consensus 113 f~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkKR 173 (400)
T KOG3827|consen 113 FTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKKR 173 (400)
T ss_pred hhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 45678889999999999975433 345566666778899999999999887666543333
No 42
>PLN03223 Polycystin cation channel protein; Provisional
Probab=93.70 E-value=12 Score=44.91 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=12.9
Q ss_pred HHhhhh-hHHHHHHhhc
Q 008250 31 KRYMRR-YFIIDFLAVL 46 (572)
Q Consensus 31 ~~Ylk~-~F~~Dlis~l 46 (572)
+.|+++ |-|+|++.++
T Consensus 1208 laYFKSfWNwLEIl~Il 1224 (1634)
T PLN03223 1208 LAYFLSGWNYVDFASIG 1224 (1634)
T ss_pred hhHhccchHHHHHHHHH
Confidence 589998 9999996543
No 43
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=92.04 E-value=0.037 Score=58.97 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhhcccccccccCCchhH--------HHHHHHHHHHHHHHHHHH
Q 008250 209 SKYCYCLWWGLQNLSTLGQGLQTSTFPGEV--------IFSIALAIFGLILFALLI 256 (572)
Q Consensus 209 ~~Y~~slywa~~tlttvGygdi~~~~~~E~--------~~~i~~~i~G~~~fa~li 256 (572)
.-|+.|+|+++.++||+|+||+.|.+.... .+..++.++|...++.+.
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 458889999999999999999999987755 577788888888877766
No 44
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=87.67 E-value=0.67 Score=50.51 Aligned_cols=93 Identities=16% Similarity=0.221 Sum_probs=73.6
Q ss_pred HHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeech
Q 008250 334 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGE 413 (572)
Q Consensus 334 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 413 (572)
...+.++..|.++-...++++|...+...++...++++.|+.+.+.|++++|.|-+. | ...-|-..||-
T Consensus 36 ~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~----g-------qi~mp~~~fgk 104 (1283)
T KOG3542|consen 36 YEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE----G-------QIYMPYGCFGK 104 (1283)
T ss_pred HHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee----c-------ceecCcccccc
Confidence 446778888999999999999999999999999999999999999999999998653 2 12345556675
Q ss_pred hhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHH
Q 008250 414 ELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAE 449 (572)
Q Consensus 414 ~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~ 449 (572)
.. +. .++.++-.+++++.++++..
T Consensus 105 r~------g~------~r~~nclllq~semivid~~ 128 (1283)
T KOG3542|consen 105 RT------GQ------NRTHNCLLLQESEMIVIDYP 128 (1283)
T ss_pred cc------cc------ccccceeeecccceeeeecC
Confidence 43 11 26788888999999988543
No 45
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.93 E-value=32 Score=39.98 Aligned_cols=30 Identities=13% Similarity=0.324 Sum_probs=16.3
Q ss_pred CchhHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 008250 234 FPGEVIF-SIALAIFGLILFALLIGNMQTYL 263 (572)
Q Consensus 234 ~~~E~~~-~i~~~i~G~~~fa~lig~~~~~l 263 (572)
|.+-.++ .++..|+..++...++|.+..-+
T Consensus 1358 npwmllYfIsfllIvsffVlnmfVgvvvenf 1388 (1956)
T KOG2302|consen 1358 NPWMLLYFISFLLIVSFFVLNMFVGVVVENF 1388 (1956)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 34455555555566666666555
No 46
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=83.55 E-value=2.2 Score=45.57 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhhcccccccccCCchhHHHHHHH
Q 008250 212 CYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIAL 244 (572)
Q Consensus 212 ~~slywa~~tlttvGygdi~~~~~~E~~~~i~~ 244 (572)
+.|+|+.+.|.+||||||..|....-.++.+++
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~ 251 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVIL 251 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHH
Confidence 458899999999999999999876555544443
No 47
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=82.20 E-value=1e+02 Score=35.60 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=18.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008250 235 PGEVIFSIALAIFGLILFALLIGNMQTYLQSL 266 (572)
Q Consensus 235 ~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~ 266 (572)
.+-.+|.++..++.+++.=.+|+.|+...+..
T Consensus 587 ~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v 618 (743)
T TIGR00870 587 VGLLLFGAYNVIMYILLLNMLIAMMGNTYQLI 618 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44555566666666666666666666665544
No 48
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=79.14 E-value=12 Score=46.45 Aligned_cols=35 Identities=9% Similarity=0.019 Sum_probs=22.2
Q ss_pred HHHhhhcccccccccCCchhHHHHHHHHHHHHHHH
Q 008250 218 GLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILF 252 (572)
Q Consensus 218 a~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~f 252 (572)
....-+.++.|.+...+....+|-++..++|..+.
T Consensus 1058 ~~ids~~~~~~p~~~~~~~~~~ffvifii~~~ff~ 1092 (1592)
T KOG2301|consen 1058 AAIDSRGVNAQPILESNLYMYLFFVIFIIIGSFFT 1092 (1592)
T ss_pred HHhhhhccCcCCcccccccceeehhhhhhHHhhhh
Confidence 33444556666666667777777777766666554
No 49
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=78.28 E-value=81 Score=36.01 Aligned_cols=75 Identities=24% Similarity=0.389 Sum_probs=49.0
Q ss_pred hcccccccccCC------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHhhHHHHHhhcCCChhHHH
Q 008250 223 STLGQGLQTSTF------PGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRL-EEMRIKRRDSEQWMHHRLLPPDLRE 295 (572)
Q Consensus 223 ttvGygdi~~~~------~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~-~~~~~~~~~~~~~m~~~~lp~~L~~ 295 (572)
.|+|+||..... .+-.+|.+++.++.++++=.+|+.|+.-........ ++++.+...+ =.|-++.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~-iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAAT-ILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHH-HHHHHhcCCHHHHH
Confidence 578999875432 344566666777777777777777777666555444 5666544333 34556899999888
Q ss_pred HHH
Q 008250 296 RVR 298 (572)
Q Consensus 296 rv~ 298 (572)
+-+
T Consensus 680 ~~~ 682 (782)
T KOG3676|consen 680 RFR 682 (782)
T ss_pred HHh
Confidence 743
No 50
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=77.60 E-value=9.1 Score=34.88 Aligned_cols=75 Identities=11% Similarity=0.182 Sum_probs=47.9
Q ss_pred cEEEEe-CCCcEE-EccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEE
Q 008250 358 LKPCLF-TDSTYI-VREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTV 435 (572)
Q Consensus 358 l~~~~~-~~ge~I-~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv 435 (572)
++...+ .||+-. ++.. ..+++|++++|.+.+-..++|+.. ...+++||+|=-.. . ...+-
T Consensus 29 ~~v~~vgGpn~R~d~H~~-~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~flvP~--------g------vpHsP 90 (159)
T TIGR03037 29 FMVTVVGGPNARTDFHDD-PGEEFFYQLKGEMYLKVTEEGKRE---DVPIREGDIFLLPP--------H------VPHSP 90 (159)
T ss_pred EEEEEeCCCCCCcccccC-CCceEEEEEcceEEEEEEcCCcEE---EEEECCCCEEEeCC--------C------CCccc
Confidence 444444 554444 4443 379999999999999776766422 35799999974322 1 22444
Q ss_pred EEeccceeeeeCHHH
Q 008250 436 RALKEVEAFALMAEE 450 (572)
Q Consensus 436 ~Alt~~~l~~l~~~~ 450 (572)
++..+|.++++.+..
T Consensus 91 ~r~~~t~~LvIE~~r 105 (159)
T TIGR03037 91 QRPAGSIGLVIERKR 105 (159)
T ss_pred ccCCCcEEEEEEeCC
Confidence 556777777776654
No 51
>COG4709 Predicted membrane protein [Function unknown]
Probab=77.20 E-value=10 Score=35.28 Aligned_cols=71 Identities=21% Similarity=0.307 Sum_probs=52.2
Q ss_pred HHhhHHHHHhhcCCChhHHHHHHHHHHHHHHHhc--CCChhhhhhcC--ChhHHHHHHHHHHHHHhhcCcCCccCCH
Q 008250 276 KRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETR--GVDEENLVQSL--PKDLRRDIKRHLCLALVRRVPLFENMDE 348 (572)
Q Consensus 276 ~~~~~~~~m~~~~lp~~L~~rv~~y~~~~w~~~~--~~~e~~ll~~L--p~~Lr~~i~~~~~~~ll~~v~~F~~l~~ 348 (572)
-++++++|+ ..+|++.++.+..+|+-.+.+.. |.+|+++..+| |+++-+|+..+.-.+-.+.-|-+.+...
T Consensus 6 fL~eL~~yL--~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~ 80 (195)
T COG4709 6 FLNELEQYL--EGLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRR 80 (195)
T ss_pred HHHHHHHHH--HhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHH
Confidence 355677777 58999999999999988777654 67899999988 6677777776665555555555555444
No 52
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=75.66 E-value=15 Score=32.23 Aligned_cols=69 Identities=13% Similarity=0.090 Sum_probs=44.0
Q ss_pred EEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEe
Q 008250 359 KPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRAL 438 (572)
Q Consensus 359 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Al 438 (572)
....++||..+-..-....++++|++|.+++...++|+ ...+.+||.+--.. . ....+++.
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~~~~-------~-------~~H~~~N~ 98 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYALDK-------H-------DRHYLRAG 98 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEEECC-------C-------CcEEEEcC
Confidence 44578888755432222247999999999876333344 46799999875332 1 23456666
Q ss_pred ccceeeee
Q 008250 439 KEVEAFAL 446 (572)
Q Consensus 439 t~~~l~~l 446 (572)
++++++.+
T Consensus 99 e~~~~l~v 106 (125)
T PRK13290 99 EDMRLVCV 106 (125)
T ss_pred CCEEEEEE
Confidence 77777665
No 53
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=73.87 E-value=5.7 Score=30.26 Aligned_cols=45 Identities=24% Similarity=0.326 Sum_probs=33.2
Q ss_pred EEeCCCcEEEccCCCCC-eEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 361 CLFTDSTYIVREGDPVD-EMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 361 ~~~~~ge~I~~~Gd~~~-~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
..++||+..-..-.+.. ++++|++|.+.+. .+ |+ ...+.+||.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~-~~-----~~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VD-GE-----RVELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE-ET-TE-----EEEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ec-cE-----EeEccCCEEEE
Confidence 46788887666665666 9999999999887 33 33 35788999763
No 54
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=67.78 E-value=20 Score=26.43 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHhhHHHHHh
Q 008250 236 GEVIFSIALAIFGLILFALLIGNMQTYLQSLTIR---LEEMRIKRRDSEQWMH 285 (572)
Q Consensus 236 ~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~---~~~~~~~~~~~~~~m~ 285 (572)
+..++.+.+.++-+++++.+-+.+-.++++.+.+ ..+.++|++++-+.+.
T Consensus 4 ~~~Iy~~~Vi~l~vl~~~~Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 4 GDLIYYILVIILIVLFGASFTLFIRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 4455555443333333333333444445443322 2357888888877764
No 55
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=64.87 E-value=15 Score=34.13 Aligned_cols=71 Identities=11% Similarity=0.181 Sum_probs=47.2
Q ss_pred CCCc-EEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEeccce
Q 008250 364 TDST-YIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVE 442 (572)
Q Consensus 364 ~~ge-~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~ 442 (572)
.||+ .-++- ++.++++++++|.+.+...++|+.. ...+.+||+|=- |.. -..+-++..+|.
T Consensus 42 Gpn~r~d~H~-~~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fll--------P~g------vpHsP~r~~~tv 103 (177)
T PRK13264 42 GPNARTDFHY-DPGEEFFYQLEGDMYLKVQEDGKRR---DVPIREGEMFLL--------PPH------VPHSPQREAGSI 103 (177)
T ss_pred cCCccccccc-CCCceEEEEECCeEEEEEEcCCcee---eEEECCCCEEEe--------CCC------CCcCCccCCCeE
Confidence 5663 33333 5679999999999998877776422 357999999742 221 123445568888
Q ss_pred eeeeCHHHHH
Q 008250 443 AFALMAEELK 452 (572)
Q Consensus 443 l~~l~~~~~~ 452 (572)
.+++.+..-.
T Consensus 104 ~LviE~~r~~ 113 (177)
T PRK13264 104 GLVIERKRPE 113 (177)
T ss_pred EEEEEeCCCC
Confidence 8888766543
No 56
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=61.58 E-value=38 Score=31.53 Aligned_cols=55 Identities=25% Similarity=0.488 Sum_probs=41.9
Q ss_pred HHhhHHHHHhhcCCChhHHHHHHHHHHHHHHHh--cCCChhhhhhcC--ChhHHHHHHHHH
Q 008250 276 KRRDSEQWMHHRLLPPDLRERVRRYDQYKWLET--RGVDEENLVQSL--PKDLRRDIKRHL 332 (572)
Q Consensus 276 ~~~~~~~~m~~~~lp~~L~~rv~~y~~~~w~~~--~~~~e~~ll~~L--p~~Lr~~i~~~~ 332 (572)
=+++++++++ ++|++-++.+.+||+-...+. .|..|++++++| |+++-+++..+.
T Consensus 6 fL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 6 FLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 4556788886 599999999999998777753 467899999997 666666665443
No 57
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=61.25 E-value=3.2e+02 Score=31.92 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=11.4
Q ss_pred HHhhhh-hHHHHHHhh
Q 008250 31 KRYMRR-YFIIDFLAV 45 (572)
Q Consensus 31 ~~Ylk~-~F~~Dlis~ 45 (572)
++|+++ |.++|++-.
T Consensus 493 ~~y~~s~wN~ld~~i~ 508 (798)
T KOG3599|consen 493 GRYVRSKWNWLDLAIV 508 (798)
T ss_pred HHHHhhhHHHHHHHHH
Confidence 489988 988887543
No 58
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=60.74 E-value=10 Score=33.56 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhhc
Q 008250 208 FSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHR 287 (572)
Q Consensus 208 ~~~Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~ 287 (572)
......++|+.+.++.. +-++..|.+...+++.+++.++++++.+...|++++++... ..+...+.+++..++.
T Consensus 42 ~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~-----~~~~~i~sl~dL~~~~ 115 (148)
T PF00060_consen 42 RFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP-----KYEPPIDSLEDLANSG 115 (148)
T ss_dssp HHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-----HHTSS-SSHHHHHTHS
T ss_pred cccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CcCCCCCCHHHHHHCC
Confidence 45567788888888776 33568899999999999999999999999999999988542 2223455666766655
No 59
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=59.98 E-value=3.3e+02 Score=33.29 Aligned_cols=71 Identities=20% Similarity=0.204 Sum_probs=35.8
Q ss_pred HHHHHHhhhhhHHHHHHhhcchhHHHHhhhccCCCCchhhhhhHHHHHHHHHhhhhHHHHhhchhhhhhhhhhhH
Q 008250 27 AQIAKRYMRRYFIIDFLAVLPLPQIVVWRFLLRSNGSDVLATKQALFFIVLFQYFPRFFRILPLTSELKRTAGVF 101 (572)
Q Consensus 27 ~~I~~~Ylk~~F~~Dlis~lP~~~i~~~~~~~~~~~~~~~~~~~~Lrl~~l~~~l~rl~ri~~l~~~i~~~~~~~ 101 (572)
++++.-+-.-|+.+|+++++=|..-+..-..|.. ....-+..-.+-++ ++ -.||+.++.+.+.+.-...++
T Consensus 853 ~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~~-~~~~GRvIl~~d~i-~~--t~rLl~~f~V~~~lGPyI~mv 923 (1381)
T KOG3614|consen 853 QKVRVYFADFWNLIDLLAILLFLVGPVLRLLPID-SIYSGRVILCFDFI-LF--TLRLLHYFTVSKQLGPYIVMV 923 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhheeEecCcc-ceecceeeeeehHH-HH--HHHHhhheeeccccCchhHHH
Confidence 4454444456999999998876443333233311 01111111111111 11 357888888777665444433
No 60
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=54.97 E-value=17 Score=30.93 Aligned_cols=45 Identities=29% Similarity=0.561 Sum_probs=33.6
Q ss_pred cCCChhHHHHHHHHHHHHHHHh----------cCCChhhhhhcCChhHHHHHHHH
Q 008250 287 RLLPPDLRERVRRYDQYKWLET----------RGVDEENLVQSLPKDLRRDIKRH 331 (572)
Q Consensus 287 ~~lp~~L~~rv~~y~~~~w~~~----------~~~~e~~ll~~Lp~~Lr~~i~~~ 331 (572)
..||+++|..|...+...-... ...+...++..||++||++|...
T Consensus 51 ~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 51 AALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 4689999999999886543321 12345679999999999998754
No 61
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=52.77 E-value=28 Score=27.23 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=28.5
Q ss_pred eCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 363 FTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 363 ~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
..||..-..-. .+++.+|++|.+.+... +|. ...+++||.+-
T Consensus 14 ~~pg~~~~~~~--~~E~~~vleG~v~it~~-~G~-----~~~~~aGD~~~ 55 (74)
T PF05899_consen 14 CTPGKFPWPYP--EDEFFYVLEGEVTITDE-DGE-----TVTFKAGDAFF 55 (74)
T ss_dssp EECEEEEEEES--SEEEEEEEEEEEEEEET-TTE-----EEEEETTEEEE
T ss_pred ECCceeEeeCC--CCEEEEEEEeEEEEEEC-CCC-----EEEEcCCcEEE
Confidence 34555433322 28899999999987643 555 35789999874
No 62
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=52.42 E-value=47 Score=29.63 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=38.2
Q ss_pred cEEEEeCCCcEEEccCCC-CCeEEEEEeeEEEEEEecC-CceeeeeeeeeCCCCeech
Q 008250 358 LKPCLFTDSTYIVREGDP-VDEMLFIIRGRLESVTTDG-GRSGFFNRGFLKEGDFCGE 413 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~-g~~~~~~~~~l~~Gd~fGe 413 (572)
+....+.||...-..--+ ..++++|++|...+...+. |++.. ...+.+||.+-.
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~--~~~l~~GD~~~i 87 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVY--DARLREGDVFVV 87 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEE--EEEecCCCEEEE
Confidence 556678888876554433 5789999999999876443 34433 578999997743
No 63
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=51.68 E-value=78 Score=33.31 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008250 207 FFSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLT 267 (572)
Q Consensus 207 ~~~~Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~ 267 (572)
..--|+.+|-+++..+.+++-++....-..-..+++++.+++++.|-+.|..++..++-.+
T Consensus 97 vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ 157 (371)
T PF10011_consen 97 VLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSN 157 (371)
T ss_pred HHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 3456788888888888877766652222233888888889999999999999988886443
No 64
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=51.30 E-value=21 Score=39.06 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhhcCC
Q 008250 212 CYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLL 289 (572)
Q Consensus 212 ~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~l 289 (572)
+.|+||++...+.-| -|+.|.+...++..-++-++.+++.+--.+|++..+. .+.+..-+..+++..++..+
T Consensus 597 fNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT-----vErMvsPIESaEDLAkQteI 668 (897)
T KOG1054|consen 597 FNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT-----VERMVSPIESAEDLAKQTEI 668 (897)
T ss_pred hHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh-----HHhhcCcchhHHHHhhccee
Confidence 459999999999877 5999999999999988888877777666777777763 34455555556666665554
No 65
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=50.25 E-value=43 Score=29.18 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=40.8
Q ss_pred cEEEEeCCCcEEEccCCC-CCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhh
Q 008250 358 LKPCLFTDSTYIVREGDP-VDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEEL 415 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ 415 (572)
.....++||..+-..--+ .....+|++|.+++... |. ...+.+||++-...
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~-----~~~l~~Gd~i~ip~ 96 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GE-----KKELKAGDVIIIPP 96 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--CC-----ceEecCCCEEEECC
Confidence 456789999999888877 77999999999998765 44 45789999986543
No 66
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=49.50 E-value=91 Score=35.73 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=32.3
Q ss_pred hcCChhHHHHHHHHHHHHHhh-----cCcCCccCCHHHHHHHHhcc
Q 008250 318 QSLPKDLRRDIKRHLCLALVR-----RVPLFENMDERLLDAICERL 358 (572)
Q Consensus 318 ~~Lp~~Lr~~i~~~~~~~ll~-----~v~~F~~l~~~~l~~l~~~l 358 (572)
+.||++||++|..+....... .-.++++++++..+.|+.++
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL 416 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHL 416 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHH
Confidence 469999999999998776643 33466788998888888776
No 67
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=44.98 E-value=62 Score=28.21 Aligned_cols=48 Identities=19% Similarity=0.251 Sum_probs=35.1
Q ss_pred ccEEEEeCCCcEE-EccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCee
Q 008250 357 RLKPCLFTDSTYI-VREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFC 411 (572)
Q Consensus 357 ~l~~~~~~~ge~I-~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 411 (572)
..+...+++|+-+ .+--...++.|+|++|...+... |+ ...+++||.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~-----~~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GE-----EVEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CE-----EEEecCCCEE
Confidence 4667788888885 44444479999999999988753 33 3467888875
No 68
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=44.87 E-value=1.2e+02 Score=28.91 Aligned_cols=58 Identities=22% Similarity=0.428 Sum_probs=38.7
Q ss_pred cCChhHHHHHHHHHHHHHhhcCcCC-ccCCHHHHHHHHhccEEEE--eCCCcEEEccCCCCC
Q 008250 319 SLPKDLRRDIKRHLCLALVRRVPLF-ENMDERLLDAICERLKPCL--FTDSTYIVREGDPVD 377 (572)
Q Consensus 319 ~Lp~~Lr~~i~~~~~~~ll~~v~~F-~~l~~~~l~~l~~~l~~~~--~~~ge~I~~~Gd~~~ 377 (572)
.+|+. .+.+...+...++.---.| ...++...++......+.. +.+|+.|+++|+..+
T Consensus 147 ~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 147 NLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred CCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 44555 3344444444433332233 3467778888888899988 999999999999765
No 69
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=40.35 E-value=4.8e+02 Score=27.77 Aligned_cols=23 Identities=13% Similarity=0.371 Sum_probs=16.8
Q ss_pred eChHHHHHHhhhh-hHHHHHHhhc
Q 008250 24 IDPAQIAKRYMRR-YFIIDFLAVL 46 (572)
Q Consensus 24 ~d~~~I~~~Ylk~-~F~~Dlis~l 46 (572)
.+-++..++|+++ |-++|++.++
T Consensus 230 ~~i~~~g~~y~~~~WN~~e~~ii~ 253 (425)
T PF08016_consen 230 KKIRREGRAYFKSFWNWLELLIIL 253 (425)
T ss_pred HHHHHhhhHHhhhcCcHHHHHHHH
Confidence 3445556789988 8899988765
No 70
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=39.15 E-value=67 Score=35.51 Aligned_cols=53 Identities=21% Similarity=0.359 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008250 211 YCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYL 263 (572)
Q Consensus 211 Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l 263 (572)
.-.++||+-..|..-|-|.-+|.+..-+++.++++=+..++-|--.+|++..+
T Consensus 614 lssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFL 666 (993)
T KOG4440|consen 614 LSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFL 666 (993)
T ss_pred hhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhe
Confidence 34578888888888888889999999999988888777777666677777665
No 71
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=37.12 E-value=7.5e+02 Score=29.05 Aligned_cols=42 Identities=10% Similarity=0.122 Sum_probs=29.9
Q ss_pred cCCChhHHHHHHHHHHHHHHHhcCCChhhhhhcCChhHHHHHHHHHH
Q 008250 287 RLLPPDLRERVRRYDQYKWLETRGVDEENLVQSLPKDLRRDIKRHLC 333 (572)
Q Consensus 287 ~~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~ 333 (572)
.++|+.|+.++..++.... +..-.+++.++++...++...+.
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~-----l~~~~lF~~~s~~~l~~L~~~~~ 398 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPV-----VEKVYLFKGVSREILLLLVTKMK 398 (823)
T ss_pred HHcCHHHHHHHHHHHHHHH-----HhhCcchhcCCHHHHHHHHHhhh
Confidence 4789999999887764432 23346788888888877776664
No 72
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=34.75 E-value=78 Score=25.62 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=44.7
Q ss_pred ccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEE
Q 008250 357 RLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVR 436 (572)
Q Consensus 357 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~ 436 (572)
.+....+.||..+=...-.+.+..||++|.+.- ++| .+.+||++=... -+..+..
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d---~~~--------~~~~G~~~~~p~--------------g~~h~~~ 79 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD---GDG--------RYGAGDWLRLPP--------------GSSHTPR 79 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE---TTC--------EEETTEEEEE-T--------------TEEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE---CCc--------cCCCCeEEEeCC--------------CCccccC
Confidence 456678889988887777788889999999862 222 347888864332 1567788
Q ss_pred Eeccceeee
Q 008250 437 ALKEVEAFA 445 (572)
Q Consensus 437 Alt~~~l~~ 445 (572)
+.++|.++.
T Consensus 80 s~~gc~~~v 88 (91)
T PF12973_consen 80 SDEGCLILV 88 (91)
T ss_dssp ESSCEEEEE
T ss_pred cCCCEEEEE
Confidence 888998875
No 73
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=34.20 E-value=1.9e+02 Score=27.27 Aligned_cols=53 Identities=8% Similarity=-0.014 Sum_probs=34.4
Q ss_pred cEEEEeCCCcEE---------EccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYI---------VREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I---------~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
+-...+.||... +++.....++|+|++|...+...+...+.. ...+.+||.+-
T Consensus 70 ~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~--~~~v~pGd~v~ 131 (191)
T PRK04190 70 FGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEAR--WIEMEPGTVVY 131 (191)
T ss_pred EEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEE--EEEECCCCEEE
Confidence 455677888753 334334569999999999877643321121 46789999763
No 74
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=34.04 E-value=70 Score=27.10 Aligned_cols=49 Identities=24% Similarity=0.342 Sum_probs=31.5
Q ss_pred CCChhHHHHHHHHHHHHHHHh---c------CC----ChhhhhhcCChhHHHHHHHHHHHHH
Q 008250 288 LLPPDLRERVRRYDQYKWLET---R------GV----DEENLVQSLPKDLRRDIKRHLCLAL 336 (572)
Q Consensus 288 ~lp~~L~~rv~~y~~~~w~~~---~------~~----~e~~ll~~Lp~~Lr~~i~~~~~~~l 336 (572)
-||+++|..|..-....-... . .. -..++|..||+++|.+|...-....
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~~ 69 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRER 69 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHHH
Confidence 488999988855443321100 0 00 1257999999999999987765543
No 75
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=34.03 E-value=1.2e+02 Score=31.84 Aligned_cols=52 Identities=13% Similarity=0.053 Sum_probs=35.7
Q ss_pred cEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecC-CceeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDG-GRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~-g~~~~~~~~~l~~Gd~fG 412 (572)
+....+.||...--.--...++.+|++|.+++...+. |+.. ...+.+||++-
T Consensus 69 ~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~---~~~L~~GD~~~ 121 (367)
T TIGR03404 69 GVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNY---IDDVGAGDLWY 121 (367)
T ss_pred ceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEE---EeEECCCCEEE
Confidence 4456777887653322345689999999999877553 4432 24799999874
No 76
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=33.76 E-value=1.7e+02 Score=20.70 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH
Q 008250 239 IFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDS 280 (572)
Q Consensus 239 ~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~~~~~~~~~~ 280 (572)
.++.+..+..++....+...++.+-.......+++|..-+++
T Consensus 8 ~~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~ 49 (53)
T PF01484_consen 8 VVSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDA 49 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445455555566666666666666666776665544
No 77
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=32.01 E-value=5.7e+02 Score=29.70 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhhccccccc
Q 008250 212 CYCLWWGLQNLSTLGQGLQ 230 (572)
Q Consensus 212 ~~slywa~~tlttvGygdi 230 (572)
.-+++|++-+++-++-.++
T Consensus 555 ~~tLFWsiFglv~~~~~~l 573 (822)
T KOG3609|consen 555 SKTLFWSIFGLVVLGSVVL 573 (822)
T ss_pred HHHHHHHHHhcccccceec
Confidence 4589999987776554443
No 78
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=30.70 E-value=4e+02 Score=23.96 Aligned_cols=54 Identities=13% Similarity=-0.022 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHHHhhhcccccccccCCchh-----HHHHHHHHHHHHHHHHHHHHH
Q 008250 205 KKFFSKYCYCLWWGLQNLSTLGQGLQTSTFPGE-----VIFSIALAIFGLILFALLIGN 258 (572)
Q Consensus 205 ~~~~~~Y~~slywa~~tlttvGygdi~~~~~~E-----~~~~i~~~i~G~~~fa~lig~ 258 (572)
.........++..++-++...--|+--...... ...+.+..++-.++.++++.+
T Consensus 136 ~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~n 194 (200)
T PF00520_consen 136 DIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLN 194 (200)
T ss_dssp -SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHH
Confidence 344556666666776666655545444333333 334444444444444444433
No 79
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=30.11 E-value=1.5e+02 Score=31.07 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=35.7
Q ss_pred cEEEEeCCCcEEEccCCC-CCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCee
Q 008250 358 LKPCLFTDSTYIVREGDP-VDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFC 411 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~f 411 (572)
+....+.||...-..=-+ .+++++|++|.+++...+ +|+.. ...+++||.+
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~---~~~l~~GD~~ 299 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNAR---TFDYQAGDVG 299 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEE---EEEECCCCEE
Confidence 566778888876444333 679999999999987543 34332 3569999975
No 80
>COG1422 Predicted membrane protein [Function unknown]
Probab=29.01 E-value=2.2e+02 Score=26.99 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHhhHHHHHh
Q 008250 247 FGLILFALLIGNMQTYLQSLT---IRLEEMRIKRRDSEQWMH 285 (572)
Q Consensus 247 ~G~~~fa~lig~~~~~l~~~~---~~~~~~~~~~~~~~~~m~ 285 (572)
+++++.|.++|.+.++++... .+.+++++.+++.++.++
T Consensus 48 lvilV~avi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~ 89 (201)
T COG1422 48 LVILVAAVITGLYITILQKLLIDQEKMKELQKMMKEFQKEFR 89 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 345555666777777776654 344555556666655554
No 81
>PRK06771 hypothetical protein; Provisional
Probab=28.72 E-value=3.3e+02 Score=22.42 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhhcCC
Q 008250 238 VIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLL 289 (572)
Q Consensus 238 ~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~l 289 (572)
.+.-|.+.++|. .|+...++.+-+.++.+....+.+++.+.+.+.....
T Consensus 3 ~~ili~~~~~~~---i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi~~~ 51 (93)
T PRK06771 3 FWMIIPIAIFGF---IYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGIVDR 51 (93)
T ss_pred hhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 333344434443 3445555666666667777777777777666654444
No 82
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=28.40 E-value=1.3e+02 Score=31.15 Aligned_cols=51 Identities=25% Similarity=0.356 Sum_probs=27.1
Q ss_pred HHHHHhhcchhHHHHhhhccCC-CC--chhhhhhHHHHHHHHHhhhhHHHHhhchhhh
Q 008250 39 IIDFLAVLPLPQIVVWRFLLRS-NG--SDVLATKQALFFIVLFQYFPRFFRILPLTSE 93 (572)
Q Consensus 39 ~~Dlis~lP~~~i~~~~~~~~~-~~--~~~~~~~~~Lrl~~l~~~l~rl~ri~~l~~~ 93 (572)
++|++|++|+..-+.-....+. .+ ....-...+||++| |.|++||++|.+.
T Consensus 290 iIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRViR----LVRVFRIFKLSRH 343 (507)
T KOG1545|consen 290 IIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVIR----LVRVFRIFKLSRH 343 (507)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHHH----HHHHhhheeeccc
Confidence 7999999999654432222221 11 12222234555444 4566666666553
No 83
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=28.37 E-value=2.8e+02 Score=35.06 Aligned_cols=15 Identities=47% Similarity=0.915 Sum_probs=10.1
Q ss_pred Hhhhh-hHHHHHHhhc
Q 008250 32 RYMRR-YFIIDFLAVL 46 (572)
Q Consensus 32 ~Ylk~-~F~~Dlis~l 46 (572)
.|.++ |.++|.+-+.
T Consensus 501 ~yF~~~~n~fD~~iv~ 516 (1592)
T KOG2301|consen 501 NYFRRGWNIFDLIIVL 516 (1592)
T ss_pred HHHhhhcchheEEEEe
Confidence 34543 7788887777
No 84
>PRK11171 hypothetical protein; Provisional
Probab=27.90 E-value=1.5e+02 Score=29.50 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=38.1
Q ss_pred ccEEEEeCCCcEEEcc-CCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 357 RLKPCLFTDSTYIVRE-GDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 357 ~l~~~~~~~ge~I~~~-Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
.+....++||..+-.. .....+.++|++|.+++.. +|+ ...+.+||++-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~--~~~-----~~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL--NND-----WVEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 4667889999998773 6677799999999998753 444 45789999764
No 85
>PRK09108 type III secretion system protein HrcU; Validated
Probab=27.53 E-value=2e+02 Score=30.01 Aligned_cols=66 Identities=6% Similarity=0.171 Sum_probs=40.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhhcCCChhHHHHHHH
Q 008250 234 FPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRR 299 (572)
Q Consensus 234 ~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~ 299 (572)
.....++.++..++..+..++++-.+..+.-+...-.++++-..+++++-+|+..-+++++.|.|+
T Consensus 176 ~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq 241 (353)
T PRK09108 176 DLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKR 241 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 344455566666666666665555555555443333444455556788888888888888887665
No 86
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=26.71 E-value=2.8e+02 Score=24.44 Aligned_cols=56 Identities=23% Similarity=0.257 Sum_probs=36.0
Q ss_pred cEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEe-cCC-----ceeeeeeeeeCCCCeechh
Q 008250 358 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGG-----RSGFFNRGFLKEGDFCGEE 414 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~g-----~~~~~~~~~l~~Gd~fGe~ 414 (572)
+....+.||....-.=..+.++.+|.+|..++... .++ +.....+ .+++||+|--.
T Consensus 36 ~~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v-~l~~Gdv~~vP 97 (144)
T PF00190_consen 36 VRRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKV-RLKAGDVFVVP 97 (144)
T ss_dssp EEEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEE-EEETTEEEEE-
T ss_pred EEeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeecee-eeecccceeec
Confidence 44556688887765544788999999999996433 333 1111112 49999998643
No 87
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=25.84 E-value=2.1e+02 Score=30.03 Aligned_cols=63 Identities=13% Similarity=0.228 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhhcCCChhHHHHHHH
Q 008250 237 EVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRR 299 (572)
Q Consensus 237 E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~ 299 (572)
..+...+..+++.++.++++-.+..+.-+...-.++++-..+++++-+|+..-+++++.|.|+
T Consensus 186 ~~~~~~~~~l~~~~~~~~~via~~D~~~q~~~~~k~lkMSkqEVKdE~Ke~EGdP~iK~r~Rq 248 (358)
T PRK13109 186 ELILTVAIRLVSAVAIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQAEGDPSVKARLRS 248 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 334444444444444444444444444333333344444455778888888888888877665
No 88
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=25.11 E-value=2.2e+02 Score=29.65 Aligned_cols=62 Identities=6% Similarity=0.176 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhhcCCChhHHHHHHHH
Q 008250 239 IFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRY 300 (572)
Q Consensus 239 ~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~y 300 (572)
++..+..+++.+..++++-.+..+.-+...-.++++-..+++++-+|+..-+++++.|.|+-
T Consensus 178 ~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~r~R~~ 239 (342)
T TIGR01404 178 VGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRREL 239 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 44444444444444443333333332222223344444557888888888888888887664
No 89
>PHA02909 hypothetical protein; Provisional
Probab=24.36 E-value=1e+02 Score=22.58 Aligned_cols=40 Identities=25% Similarity=0.399 Sum_probs=25.1
Q ss_pred hhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008250 222 LSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQ 264 (572)
Q Consensus 222 lttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~ 264 (572)
|.+|.||+-.-.+..|..|+|.+. .++|..++-.|-.++.
T Consensus 14 mlsvdygngkkvyytentfcimvs---filfviiflsmftila 53 (72)
T PHA02909 14 MLSVDYGNGKKVYYTENTFCIMVS---FILFVIIFLSMFTILA 53 (72)
T ss_pred EEEEecCCCeEEEEeccchhHHHH---HHHHHHHHHHHHHHHH
Confidence 567888887777778888877553 3444444444544443
No 90
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=23.97 E-value=2e+02 Score=26.05 Aligned_cols=51 Identities=29% Similarity=0.326 Sum_probs=32.4
Q ss_pred CCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeee
Q 008250 375 PVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFAL 446 (572)
Q Consensus 375 ~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l 446 (572)
..+++.+|++|.+.+. .+|+ .....+||.+=- |+. ++.+..+-..++++..
T Consensus 94 ~YDEi~~VlEG~L~i~--~~G~-----~~~A~~GDvi~i--------PkG------s~I~fst~~~a~~~Yv 144 (152)
T PF06249_consen 94 TYDEIKYVLEGTLEIS--IDGQ-----TVTAKPGDVIFI--------PKG------STITFSTPDYARFFYV 144 (152)
T ss_dssp SSEEEEEEEEEEEEEE--ETTE-----EEEEETT-EEEE---------TT-------EEEEEEEEEEEEEEE
T ss_pred ecceEEEEEEeEEEEE--ECCE-----EEEEcCCcEEEE--------CCC------CEEEEecCCCEEEEEE
Confidence 3578999999999876 3465 457889998631 222 4556666666666654
No 91
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=23.74 E-value=5.9e+02 Score=23.60 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=38.2
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh--HHHHHHHHHHhhHHHHHhhcCCChh
Q 008250 231 TSTFPGEVIFSIALAIFGLILFALLIGN-MQTYLQSLT--IRLEEMRIKRRDSEQWMHHRLLPPD 292 (572)
Q Consensus 231 ~~~~~~E~~~~i~~~i~G~~~fa~lig~-~~~~l~~~~--~~~~~~~~~~~~~~~~m~~~~lp~~ 292 (572)
.+.--.+-++.+.++.+++...++++|- +++.+=.+. ....++..|-.+.-+-.+++.+++.
T Consensus 69 ~~I~GlDP~~~~g~~t~a~g~lG~L~GP~~G~~vf~l~~r~~~~~~~~Ke~eF~~rIkknRvDps 133 (173)
T PF08566_consen 69 QQIMGLDPFMVYGLATLACGALGWLVGPSLGNQVFRLLNRKYLKQMDAKEKEFLARIKKNRVDPS 133 (173)
T ss_pred ccccCcCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 3444568888999999999999998873 333332221 2334555555556566666666553
No 92
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=23.33 E-value=1.2e+02 Score=27.62 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=32.2
Q ss_pred EEeCCCc--EEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhh
Q 008250 361 CLFTDST--YIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEEL 415 (572)
Q Consensus 361 ~~~~~ge--~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ 415 (572)
..++||. ...+--...+++..|++|...+.. ++| ...++|||+.|--+
T Consensus 47 ~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~-d~~------e~~lrpGD~~gFpA 96 (161)
T COG3837 47 EIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE-DGG------ETRLRPGDSAGFPA 96 (161)
T ss_pred EEeCCCCccccccccccCceEEEEEcCceEEEE-CCe------eEEecCCceeeccC
Confidence 3444442 233334567899999999987654 444 35789999998755
No 93
>PRK11171 hypothetical protein; Provisional
Probab=22.79 E-value=1.8e+02 Score=28.96 Aligned_cols=48 Identities=15% Similarity=0.195 Sum_probs=33.3
Q ss_pred cEEEEeCCCcEEEccCC--CCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYIVREGD--PVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd--~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
+....+.||.-.-.... ..+++++|++|.+++.. +|+ ...+.+||.+=
T Consensus 63 ~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~--~g~-----~~~L~~GDsi~ 112 (266)
T PRK11171 63 QYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL--EGK-----THALSEGGYAY 112 (266)
T ss_pred EEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 34567788875433332 24689999999999875 344 46789999864
No 94
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=22.70 E-value=3.6e+02 Score=26.33 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=46.3
Q ss_pred cEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCC-CCeech---hhhhhhcCCCCCCCCCCccc
Q 008250 358 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKE-GDFCGE---ELLTWALDPKSGVNLPSSTR 433 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~-Gd~fGe---~~l~~~~~~~~~~~l~~s~~ 433 (572)
++...+++|+..-.+-...+.+..++.|.+.+..... . ...++. -+.|-. .++ .-|. -+..
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g~--~----f~~iG~R~SvFe~~p~~~v---Yvp~------g~~~ 95 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSAHGS--T----FGEIGTRMSVFERKPPDSV---YVPA------GSAF 95 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEeeccc--h----HhhcccccccccCCCCCeE---EecC------CceE
Confidence 5667889999987776666777788899998764321 0 011110 011111 000 1111 2678
Q ss_pred EEEEeccceeeeeCHHH
Q 008250 434 TVRALKEVEAFALMAEE 450 (572)
Q Consensus 434 tv~Alt~~~l~~l~~~~ 450 (572)
++.|.+++++..-+.--
T Consensus 96 ~vtA~t~~~vAvC~AP~ 112 (270)
T COG3718 96 SVTATTDLEVAVCSAPG 112 (270)
T ss_pred EEEeecceEEEEEeCCC
Confidence 99999999887766544
No 95
>PHA01757 hypothetical protein
Probab=21.60 E-value=4.2e+02 Score=21.06 Aligned_cols=43 Identities=16% Similarity=0.099 Sum_probs=29.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 008250 234 FPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKR 277 (572)
Q Consensus 234 ~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~~~~~~~ 277 (572)
+..|..+--|+...|.+.-++++|.+.-+... ..+.+.|....
T Consensus 4 ~l~e~al~gf~a~~g~l~~~fii~e~~hlyne-k~~nenf~~Av 46 (98)
T PHA01757 4 TLLEGALYGFFAVTGALSASFIIGEIVHLYNE-KQRNENFAKAI 46 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HhhhHhHHHHH
Confidence 45677777888899999999999988766532 22334444443
No 96
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=21.19 E-value=2.3e+02 Score=29.41 Aligned_cols=74 Identities=9% Similarity=0.022 Sum_probs=50.5
Q ss_pred EEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEecc
Q 008250 361 CLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKE 440 (572)
Q Consensus 361 ~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~ 440 (572)
+.+++|..--..-..+..+|+|.+|.-.+.. +|+ ....++||+|---+- +..+..+.++
T Consensus 255 q~L~~G~~t~~~r~T~s~Vf~VieG~G~s~i--g~~-----~~~W~~gD~f~vPsW--------------~~~~h~a~~d 313 (335)
T TIGR02272 255 QLLPKGFRTATYRSTDATVFCVVEGRGQVRI--GDA-----VFRFSPKDVFVVPSW--------------HPVRFEASDD 313 (335)
T ss_pred hccCCCCCCCCccccccEEEEEEeCeEEEEE--CCE-----EEEecCCCEEEECCC--------------CcEecccCCC
Confidence 4566776665666677899999999887665 333 346899999875442 1234455567
Q ss_pred ceeeeeCHHHHHHHH
Q 008250 441 VEAFALMAEELKFVA 455 (572)
Q Consensus 441 ~~l~~l~~~~~~~l~ 455 (572)
+.++.++-.-+.+-+
T Consensus 314 a~Lf~~~D~Pll~~L 328 (335)
T TIGR02272 314 AVLFSFSDRPVQQKL 328 (335)
T ss_pred eEEEEecCHHHHHHh
Confidence 878888877766544
No 97
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=21.12 E-value=71 Score=23.74 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhhhcccc
Q 008250 210 KYCYCLWWGLQNLSTLGQ 227 (572)
Q Consensus 210 ~Y~~slywa~~tlttvGy 227 (572)
||+.++.|++.-.--+||
T Consensus 2 kyivt~fWs~il~~vvgy 19 (57)
T PF11151_consen 2 KYIVTFFWSFILGEVVGY 19 (57)
T ss_pred cEEehhHHHHHHHHHHHH
Confidence 688888998776666666
No 98
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=20.93 E-value=5.5e+02 Score=26.12 Aligned_cols=50 Identities=12% Similarity=0.242 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhhcCCChhHHHHHHH
Q 008250 250 ILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRR 299 (572)
Q Consensus 250 ~~fa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~ 299 (572)
+..+|++-.+..+.-+...-..+++-..+++.+-.+..+-+++++.+=|+
T Consensus 191 ~~~~ylv~sv~Dy~fqr~~~~K~lkMSKdEVkRE~Kd~eG~PeiKskRRq 240 (349)
T COG4792 191 VAVGYLVFSVADYAFQRYQILKELKMSKDEVKREYKDMEGDPEIKSKRRQ 240 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHhcccCCchhhHHHHH
Confidence 35666666666665444455555665666777777777777777655333
No 99
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=20.91 E-value=2.2e+02 Score=27.40 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=51.6
Q ss_pred ccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEE
Q 008250 357 RLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVR 436 (572)
Q Consensus 357 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~ 436 (572)
.+....+.||..+-.....+.++.+|++|.+. +++ ..+.+||++=.-. . +..+.+
T Consensus 128 ~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~----de~-------g~y~~Gd~i~~p~-------~-------~~H~p~ 182 (215)
T TIGR02451 128 RVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS----DET-------GVYGVGDFEEADG-------S-------VQHQPR 182 (215)
T ss_pred EEEEEEECCCCccCCCcCCCcEEEEEEEEEEE----cCC-------CccCCCeEEECCC-------C-------CCcCcc
Confidence 46678899999999999999999999999963 222 3468999874322 1 345666
Q ss_pred Eec--cceeeeeCHHHHH
Q 008250 437 ALK--EVEAFALMAEELK 452 (572)
Q Consensus 437 Alt--~~~l~~l~~~~~~ 452 (572)
|.+ +|.++.+.-..+.
T Consensus 183 a~~~~~Cicl~v~dapl~ 200 (215)
T TIGR02451 183 TVSGGDCLCLAVLDAPLR 200 (215)
T ss_pred cCCCCCeEEEEEecCCcc
Confidence 664 4988888776653
No 100
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=20.58 E-value=1.1e+02 Score=22.74 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=19.7
Q ss_pred hhcCCChhHHHHHHHHHHHHHHH
Q 008250 285 HHRLLPPDLRERVRRYDQYKWLE 307 (572)
Q Consensus 285 ~~~~lp~~L~~rv~~y~~~~w~~ 307 (572)
-..++|++|++.|..|.+|...+
T Consensus 7 lfqkLPDdLKrEvldY~EfLlek 29 (65)
T COG5559 7 LFQKLPDDLKREVLDYIEFLLEK 29 (65)
T ss_pred HHHHCcHHHHHHHHHHHHHHHHH
Confidence 35689999999999999998664
No 101
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=20.13 E-value=3.4e+02 Score=28.29 Aligned_cols=65 Identities=14% Similarity=0.246 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhhcCCChhHHHHHHHH
Q 008250 236 GEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRY 300 (572)
Q Consensus 236 ~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~y 300 (572)
...+...+..+++.++.++++-.+..+.-+...-.++.+-..+++++-.|+..-+++++.|.|+-
T Consensus 176 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~rrR~~ 240 (349)
T PRK12721 176 LPVVSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRREL 240 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 34445555555555555544444444443333333444444567788888888888888877653
No 102
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=20.02 E-value=1.9e+02 Score=26.08 Aligned_cols=60 Identities=12% Similarity=0.272 Sum_probs=33.9
Q ss_pred CCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHH
Q 008250 374 DPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEE 450 (572)
Q Consensus 374 d~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~ 450 (572)
++..++++-++|.+.+-..++|+.. ...+.+|++|=--. +.| .+-+=-.++.-+++.++.
T Consensus 51 ne~eE~FyQ~kG~m~Lkv~e~g~~k---di~I~EGe~fLLP~-----------~vp---HsP~R~~~tiGLViEr~R 110 (151)
T PF06052_consen 51 NETEEFFYQLKGDMCLKVVEDGKFK---DIPIREGEMFLLPA-----------NVP---HSPQRPADTIGLVIERKR 110 (151)
T ss_dssp -SS-EEEEEEES-EEEEEEETTEEE---EEEE-TTEEEEE-T-----------T-----EEEEE-TT-EEEEEEE--
T ss_pred CCcceEEEEEeCcEEEEEEeCCceE---EEEeCCCcEEecCC-----------CCC---CCCcCCCCcEEEEEEecc
Confidence 3556999999999988777777654 35789999984322 112 333334677777776653
Done!