Query 008250
Match_columns 572
No_of_seqs 422 out of 3286
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 21:44:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 9.2E-32 3.1E-36 280.0 15.4 187 208-469 159-345 (355)
2 3ukn_A Novel protein similar t 100.0 1.4E-31 5E-36 257.8 15.2 204 260-477 1-204 (212)
3 2ptm_A Hyperpolarization-activ 100.0 1.8E-30 6.1E-35 247.4 21.8 190 265-469 2-191 (198)
4 3bpz_A Potassium/sodium hyperp 100.0 5.6E-30 1.9E-34 244.8 20.2 189 264-468 2-190 (202)
5 4f8a_A Potassium voltage-gated 99.8 2.3E-19 7.8E-24 163.7 16.1 144 313-469 5-148 (160)
6 3dn7_A Cyclic nucleotide bindi 99.8 1E-17 3.4E-22 158.1 16.1 179 333-547 5-184 (194)
7 3gyd_A CNMP-BD protein, cyclic 99.7 3.5E-17 1.2E-21 153.9 16.8 151 313-474 13-168 (187)
8 1orq_C Potassium channel; volt 99.7 2.8E-17 9.7E-22 159.1 15.9 56 210-265 165-220 (223)
9 3ocp_A PRKG1 protein; serine/t 99.7 1.3E-17 4.3E-22 148.7 11.9 131 319-464 7-137 (139)
10 3fx3_A Cyclic nucleotide-bindi 99.7 1.3E-17 4.3E-22 162.6 10.7 129 332-471 8-137 (237)
11 3idb_B CAMP-dependent protein 99.7 2.3E-17 8E-22 150.9 11.5 126 327-463 30-155 (161)
12 3mdp_A Cyclic nucleotide-bindi 99.7 6.5E-17 2.2E-21 144.1 13.7 131 335-474 6-138 (142)
13 1wgp_A Probable cyclic nucleot 99.7 4.9E-18 1.7E-22 150.8 6.2 129 335-463 6-134 (137)
14 4ev0_A Transcription regulator 99.7 4E-16 1.4E-20 149.5 19.9 126 337-473 1-127 (216)
15 3e97_A Transcriptional regulat 99.7 1.3E-16 4.4E-21 154.8 16.0 129 334-473 5-134 (231)
16 2pqq_A Putative transcriptiona 99.7 1.1E-16 3.8E-21 143.6 13.7 123 334-467 4-127 (149)
17 3iwz_A CAP-like, catabolite ac 99.7 1.1E-16 3.9E-21 154.9 13.5 128 334-471 10-143 (230)
18 2z69_A DNR protein; beta barre 99.7 3.2E-16 1.1E-20 141.6 15.3 127 334-470 11-138 (154)
19 1zyb_A Transcription regulator 99.7 6E-17 2E-21 157.6 11.0 128 333-470 16-146 (232)
20 3d0s_A Transcriptional regulat 99.7 4.2E-16 1.4E-20 150.7 15.5 128 334-472 5-133 (227)
21 3dv8_A Transcriptional regulat 99.7 1.3E-15 4.3E-20 146.4 18.8 127 335-472 3-132 (220)
22 3dkw_A DNR protein; CRP-FNR, H 99.7 1E-15 3.4E-20 147.9 15.4 129 334-472 8-137 (227)
23 1o5l_A Transcriptional regulat 99.7 6.8E-16 2.3E-20 148.0 13.9 191 340-565 4-195 (213)
24 1vp6_A CNBD, cyclic-nucleotide 99.6 1.3E-15 4.4E-20 135.1 13.4 122 333-471 9-130 (138)
25 2gau_A Transcriptional regulat 99.6 1.5E-15 5.3E-20 147.2 15.0 124 339-473 14-138 (232)
26 3pna_A CAMP-dependent protein 99.6 1.5E-15 5.3E-20 137.7 13.4 118 331-463 34-151 (154)
27 2fmy_A COOA, carbon monoxide o 99.6 2.8E-15 9.7E-20 144.2 14.5 121 335-473 4-124 (220)
28 3shr_A CGMP-dependent protein 99.6 3.5E-15 1.2E-19 150.7 15.5 138 315-467 19-156 (299)
29 3ryp_A Catabolite gene activat 99.6 9.2E-15 3.1E-19 139.3 17.1 121 341-471 2-123 (210)
30 2oz6_A Virulence factor regula 99.6 1.8E-14 6E-19 137.0 18.4 119 346-471 1-120 (207)
31 1ft9_A Carbon monoxide oxidati 99.6 4.5E-15 1.5E-19 143.1 12.8 118 336-471 1-118 (222)
32 4ava_A Lysine acetyltransferas 99.6 8.9E-15 3E-19 150.1 15.0 128 334-474 12-140 (333)
33 2a9h_A Voltage-gated potassium 99.6 3E-15 1E-19 135.3 9.4 61 210-270 84-144 (155)
34 3kcc_A Catabolite gene activat 99.6 3.5E-14 1.2E-18 140.5 17.3 118 344-471 55-173 (260)
35 2d93_A RAP guanine nucleotide 99.6 1.4E-15 4.7E-20 134.5 6.2 124 321-459 2-127 (134)
36 2r9r_B Paddle chimera voltage 99.6 8.8E-15 3E-19 158.1 13.4 59 210-268 375-433 (514)
37 3shr_A CGMP-dependent protein 99.6 9.9E-15 3.4E-19 147.3 11.5 128 331-469 153-282 (299)
38 2qcs_B CAMP-dependent protein 99.5 1.1E-13 3.7E-18 138.9 16.3 127 331-468 153-281 (291)
39 3tnp_B CAMP-dependent protein 99.5 6E-14 2.1E-18 148.5 14.8 126 327-463 137-262 (416)
40 2qcs_B CAMP-dependent protein 99.5 1.2E-13 4.1E-18 138.6 16.1 127 330-471 34-160 (291)
41 3of1_A CAMP-dependent protein 99.5 4.6E-14 1.6E-18 137.6 12.3 121 333-468 5-125 (246)
42 3of1_A CAMP-dependent protein 99.5 5.2E-14 1.8E-18 137.3 12.6 118 332-463 122-239 (246)
43 3vou_A ION transport 2 domain 99.5 1.5E-13 5.3E-18 123.7 14.5 86 211-296 53-148 (148)
44 3e6c_C CPRK, cyclic nucleotide 99.5 1.7E-13 5.8E-18 134.6 14.0 124 336-473 10-134 (250)
45 4h33_A LMO2059 protein; bilaye 99.5 3.3E-14 1.1E-18 126.1 7.8 92 211-302 44-135 (137)
46 4din_B CAMP-dependent protein 99.5 1.1E-13 3.7E-18 144.9 11.4 128 331-469 244-373 (381)
47 3la7_A Global nitrogen regulat 99.5 6.7E-13 2.3E-17 129.8 16.3 115 348-471 30-148 (243)
48 4din_B CAMP-dependent protein 99.5 2.6E-13 8.8E-18 142.0 14.1 126 330-470 125-250 (381)
49 2bgc_A PRFA; bacterial infecti 99.4 2.1E-12 7.1E-17 125.8 17.3 119 344-473 2-125 (238)
50 3tnp_B CAMP-dependent protein 99.4 2.8E-13 9.6E-18 143.3 11.8 122 334-466 266-394 (416)
51 2ih3_C Voltage-gated potassium 99.4 5.2E-13 1.8E-17 116.0 11.3 59 210-268 61-119 (122)
52 1o7f_A CAMP-dependent RAP1 gua 99.4 7.8E-13 2.7E-17 142.1 14.1 136 319-466 26-164 (469)
53 1o7f_A CAMP-dependent RAP1 gua 99.4 8.7E-13 3E-17 141.7 12.2 122 330-465 332-455 (469)
54 3eff_K Voltage-gated potassium 99.3 9.2E-12 3.1E-16 110.9 12.2 59 210-268 40-98 (139)
55 4f7z_A RAP guanine nucleotide 99.3 1.3E-11 4.4E-16 144.8 14.9 135 316-463 24-161 (999)
56 3cf6_E RAP guanine nucleotide 99.3 7.1E-12 2.4E-16 140.3 11.8 132 315-461 13-146 (694)
57 3b02_A Transcriptional regulat 99.3 2E-11 6.7E-16 115.0 12.7 92 361-470 2-94 (195)
58 2q67_A Potassium channel prote 99.2 1.2E-10 4.1E-15 99.6 11.3 58 211-268 50-107 (114)
59 2zcw_A TTHA1359, transcription 99.2 7E-11 2.4E-15 111.7 10.7 97 355-470 2-101 (202)
60 4f7z_A RAP guanine nucleotide 99.1 1.7E-10 5.8E-15 135.3 14.2 114 331-458 333-448 (999)
61 2k1e_A Water soluble analogue 99.1 1.5E-11 5.1E-16 103.4 3.3 58 210-267 40-97 (103)
62 3ouf_A Potassium channel prote 99.1 3.4E-10 1.2E-14 93.8 11.0 55 211-265 33-87 (97)
63 3ldc_A Calcium-gated potassium 99.0 1.4E-09 4.7E-14 87.2 10.8 53 211-263 29-81 (82)
64 3pjs_K KCSA, voltage-gated pot 98.9 4.2E-11 1.4E-15 109.8 -2.1 63 209-271 66-128 (166)
65 3rvy_A ION transport protein; 98.8 1.5E-08 5E-13 101.4 11.0 61 208-268 178-244 (285)
66 1xl4_A Inward rectifier potass 98.8 1.3E-08 4.4E-13 101.9 9.8 55 210-264 82-136 (301)
67 3um7_A Potassium channel subfa 98.8 2.6E-08 8.9E-13 99.3 10.5 56 210-265 115-170 (309)
68 1p7b_A Integral membrane chann 98.7 8.9E-09 3E-13 104.2 6.2 56 211-266 97-152 (333)
69 3sya_A G protein-activated inw 98.6 1.8E-07 6.2E-12 94.4 10.5 56 211-266 92-149 (340)
70 2qks_A KIR3.1-prokaryotic KIR 98.6 9E-08 3.1E-12 96.5 7.7 56 210-265 78-133 (321)
71 4gx0_A TRKA domain protein; me 98.5 5.1E-07 1.7E-11 99.1 12.0 53 211-263 52-105 (565)
72 3um7_A Potassium channel subfa 98.4 2.5E-07 8.6E-12 92.2 7.6 57 211-267 225-287 (309)
73 3ukm_A Potassium channel subfa 98.4 4.5E-07 1.5E-11 89.0 8.0 55 210-264 93-147 (280)
74 3ukm_A Potassium channel subfa 98.4 1.2E-06 4E-11 86.1 10.3 56 211-266 202-264 (280)
75 3spc_A Inward-rectifier K+ cha 98.3 2.1E-06 7.3E-11 86.7 10.5 56 210-265 94-151 (343)
76 1lnq_A MTHK channels, potassiu 98.1 2E-07 6.7E-12 95.4 -1.8 55 211-265 46-100 (336)
77 4dxw_A Navrh, ION transport pr 97.3 0.0016 5.4E-08 62.3 11.2 54 210-263 165-223 (229)
78 2kyh_A KVAP, voltage-gated pot 93.0 0.084 2.9E-06 46.5 4.4 20 31-51 80-99 (147)
79 1ors_C Potassium channel; volt 91.8 0.14 4.7E-06 44.2 4.2 20 31-51 65-84 (132)
80 3fjs_A Uncharacterized protein 79.5 6.6 0.00023 32.2 7.9 67 358-445 38-104 (114)
81 2ozj_A Cupin 2, conserved barr 77.4 7.6 0.00026 31.5 7.6 67 359-446 41-107 (114)
82 3rns_A Cupin 2 conserved barre 76.8 8.1 0.00028 36.1 8.5 69 357-446 38-106 (227)
83 2pfw_A Cupin 2, conserved barr 72.2 19 0.00063 29.0 8.8 68 358-446 36-103 (116)
84 3lwc_A Uncharacterized protein 71.3 12 0.0004 31.1 7.3 46 359-412 43-88 (119)
85 1yhf_A Hypothetical protein SP 71.1 15 0.00051 29.6 7.9 68 358-446 42-109 (115)
86 3kg2_A Glutamate receptor 2; I 65.6 6 0.00021 44.4 5.6 71 210-286 563-633 (823)
87 4e2g_A Cupin 2 conserved barre 64.6 21 0.0007 29.3 7.6 48 358-412 43-90 (126)
88 2l53_B CAM, voltage-gated sodi 57.9 11 0.00037 23.4 3.2 21 477-497 4-24 (31)
89 2kxw_B Sodium channel protein 56.7 11 0.00038 22.5 3.0 19 478-496 5-23 (27)
90 1yfu_A 3-hydroxyanthranilate-3 55.8 15 0.00052 32.7 5.1 35 375-412 54-88 (174)
91 3rns_A Cupin 2 conserved barre 55.1 30 0.001 32.1 7.6 68 358-446 155-223 (227)
92 2gu9_A Tetracenomycin polyketi 54.1 22 0.00074 28.2 5.7 48 358-412 23-73 (113)
93 1v70_A Probable antibiotics sy 53.0 25 0.00086 27.2 5.9 48 358-412 30-78 (105)
94 3d0j_A Uncharacterized protein 51.1 26 0.0009 29.9 5.7 63 371-449 45-110 (140)
95 1o5u_A Novel thermotoga mariti 51.0 50 0.0017 26.3 7.3 47 358-412 33-79 (101)
96 2bnm_A Epoxidase; oxidoreducta 50.6 41 0.0014 30.0 7.6 50 360-412 121-173 (198)
97 1dgw_A Canavalin; duplicated s 50.3 21 0.00072 31.8 5.4 52 358-412 43-94 (178)
98 3h8u_A Uncharacterized conserv 48.6 28 0.00096 28.4 5.7 49 358-412 41-90 (125)
99 3d82_A Cupin 2, conserved barr 46.4 31 0.001 26.8 5.4 51 376-447 50-100 (102)
100 2q30_A Uncharacterized protein 46.1 79 0.0027 24.6 7.9 68 359-446 36-105 (110)
101 2qnk_A 3-hydroxyanthranilate 3 45.9 53 0.0018 31.5 7.5 65 368-450 44-108 (286)
102 2i45_A Hypothetical protein; n 45.8 14 0.00046 29.5 3.1 69 362-450 34-102 (107)
103 1zvf_A 3-hydroxyanthranilate 3 45.8 20 0.00067 31.9 4.2 61 374-450 52-115 (176)
104 3ibm_A Cupin 2, conserved barr 43.3 33 0.0011 30.1 5.5 48 358-412 58-105 (167)
105 2o1q_A Putative acetyl/propion 42.3 35 0.0012 29.2 5.4 52 357-413 45-96 (145)
106 1fi2_A Oxalate oxidase, germin 42.0 56 0.0019 29.5 7.0 53 358-412 74-130 (201)
107 3bcw_A Uncharacterized protein 41.4 22 0.00074 29.7 3.7 47 360-413 53-99 (123)
108 4axo_A EUTQ, ethanolamine util 40.7 58 0.002 28.2 6.5 31 375-412 83-113 (151)
109 4i4a_A Similar to unknown prot 40.7 1.4E+02 0.0048 24.0 9.5 80 359-459 37-120 (128)
110 1sfn_A Conserved hypothetical 40.3 86 0.003 29.3 8.3 66 359-447 53-118 (246)
111 3kgz_A Cupin 2 conserved barre 38.9 30 0.001 30.1 4.4 46 359-411 47-92 (156)
112 2b8m_A Hypothetical protein MJ 38.4 33 0.0011 27.6 4.4 46 360-412 31-77 (117)
113 3jzv_A Uncharacterized protein 38.3 30 0.001 30.5 4.4 47 359-412 56-102 (166)
114 3es4_A Uncharacterized protein 37.8 36 0.0012 28.1 4.5 45 362-413 48-92 (116)
115 1vj2_A Novel manganese-contain 37.7 36 0.0012 28.0 4.7 47 359-412 51-97 (126)
116 2f4p_A Hypothetical protein TM 37.7 57 0.002 27.7 6.1 49 358-412 50-98 (147)
117 2fqp_A Hypothetical protein BP 36.8 25 0.00086 27.4 3.3 50 358-412 20-70 (97)
118 1lr5_A Auxin binding protein 1 36.4 39 0.0013 29.2 4.9 52 358-412 43-99 (163)
119 1o4t_A Putative oxalate decarb 35.7 41 0.0014 28.0 4.7 47 359-412 60-107 (133)
120 4b29_A Dimethylsulfoniopropion 35.6 62 0.0021 29.9 6.1 46 361-412 137-182 (217)
121 1y9q_A Transcriptional regulat 34.9 60 0.0021 28.8 6.0 46 360-412 108-155 (192)
122 3es1_A Cupin 2, conserved barr 34.9 40 0.0014 29.9 4.6 48 358-411 81-128 (172)
123 4e2q_A Ureidoglycine aminohydr 34.2 58 0.002 31.1 5.9 71 358-448 72-142 (266)
124 2q1z_B Anti-sigma factor CHRR, 34.1 56 0.0019 29.5 5.6 65 357-446 126-192 (195)
125 3i7d_A Sugar phosphate isomera 34.1 37 0.0013 29.6 4.3 48 358-412 45-94 (163)
126 2vqa_A SLL1358 protein, MNCA; 34.0 68 0.0023 31.7 6.8 52 358-412 54-107 (361)
127 1j58_A YVRK protein; cupin, de 33.8 67 0.0023 32.2 6.8 52 358-412 81-133 (385)
128 2pyt_A Ethanolamine utilizatio 32.8 50 0.0017 27.8 4.7 46 359-413 60-105 (133)
129 2opk_A Hypothetical protein; p 32.3 45 0.0015 26.9 4.2 34 374-412 51-84 (112)
130 1uij_A Beta subunit of beta co 32.1 48 0.0016 34.0 5.3 54 356-412 49-102 (416)
131 3l2h_A Putative sugar phosphat 31.8 41 0.0014 29.0 4.1 47 358-411 48-96 (162)
132 3h7j_A Bacilysin biosynthesis 31.0 75 0.0026 29.6 6.2 47 358-411 36-82 (243)
133 1sfn_A Conserved hypothetical 31.0 65 0.0022 30.2 5.7 49 357-412 166-215 (246)
134 2d40_A Z3393, putative gentisa 31.0 1E+02 0.0036 30.6 7.5 73 359-452 271-343 (354)
135 2vqa_A SLL1358 protein, MNCA; 30.2 95 0.0033 30.7 7.1 52 358-412 236-289 (361)
136 2ea7_A 7S globulin-1; beta bar 29.7 56 0.0019 33.7 5.4 54 356-412 61-114 (434)
137 2oa2_A BH2720 protein; 1017534 29.0 82 0.0028 26.6 5.6 51 359-411 46-98 (148)
138 3ht1_A REMF protein; cupin fol 29.0 52 0.0018 27.4 4.3 47 361-412 44-90 (145)
139 3fz3_A Prunin; TREE NUT allerg 28.9 1.1E+02 0.0039 32.1 7.5 60 351-412 389-450 (531)
140 2vpv_A Protein MIF2, MIF2P; nu 28.3 38 0.0013 29.9 3.2 45 361-412 93-139 (166)
141 2cav_A Protein (canavalin); vi 28.1 63 0.0021 33.4 5.4 53 357-412 87-139 (445)
142 3cew_A Uncharacterized cupin p 28.0 59 0.002 26.4 4.3 48 358-412 28-77 (125)
143 3nw4_A Gentisate 1,2-dioxygena 27.9 83 0.0028 31.6 6.1 77 358-455 281-357 (368)
144 2d5f_A Glycinin A3B4 subunit; 27.9 1.2E+02 0.0043 31.6 7.7 60 351-412 362-423 (493)
145 3c3v_A Arachin ARAH3 isoform; 26.3 1.1E+02 0.0037 32.3 6.8 60 351-412 367-428 (510)
146 3h7j_A Bacilysin biosynthesis 26.2 1.2E+02 0.0042 28.0 6.7 47 360-413 149-196 (243)
147 1fxz_A Glycinin G1; proglycini 25.7 1.1E+02 0.0036 32.0 6.6 56 355-412 337-394 (476)
148 1j58_A YVRK protein; cupin, de 25.6 1.1E+02 0.0037 30.6 6.6 52 358-412 259-312 (385)
149 1sef_A Conserved hypothetical 25.6 81 0.0028 30.0 5.4 48 358-412 184-232 (274)
150 3bu7_A Gentisate 1,2-dioxygena 25.1 54 0.0019 33.3 4.1 48 359-412 126-173 (394)
151 1x82_A Glucose-6-phosphate iso 24.4 1.7E+02 0.0058 26.0 7.0 52 358-412 69-130 (190)
152 2e9q_A 11S globulin subunit be 23.9 1.6E+02 0.0054 30.5 7.5 61 350-412 316-378 (459)
153 1sq4_A GLXB, glyoxylate-induce 22.2 1.1E+02 0.0036 29.3 5.5 50 356-412 191-241 (278)
154 3bu7_A Gentisate 1,2-dioxygena 22.1 77 0.0027 32.2 4.6 75 358-453 296-373 (394)
155 2qnk_A 3-hydroxyanthranilate 3 21.7 2.3E+02 0.0078 27.2 7.4 96 321-448 180-277 (286)
156 1y3t_A Hypothetical protein YX 21.6 1.1E+02 0.0038 29.6 5.7 48 358-412 48-96 (337)
157 3lag_A Uncharacterized protein 21.5 33 0.0011 27.1 1.3 50 358-411 19-69 (98)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.97 E-value=9.2e-32 Score=279.98 Aligned_cols=187 Identities=24% Similarity=0.375 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhhc
Q 008250 208 FSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHR 287 (572)
Q Consensus 208 ~~~Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~ 287 (572)
+..|..|+||++.|+||+||||++|.+..+++++++++++|++++++.+|.+.+.+.+...+
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~------------------ 220 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR------------------ 220 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 34588999999999999999999999999999999999999999999999998777432110
Q ss_pred CCChhHHHHHHHHHHHHHHHhcCCChhhhhhcCChhHHHHHHHHHHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCc
Q 008250 288 LLPPDLRERVRRYDQYKWLETRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDST 367 (572)
Q Consensus 288 ~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge 367 (572)
+++.+ ..+.++++++|.++++++++.++..++.+.++|||
T Consensus 221 ----------~~~~~------------------------------~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge 260 (355)
T 3beh_A 221 ----------GDFVR------------------------------NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA 260 (355)
T ss_dssp ----------HHHHH------------------------------HHC--------------------------------
T ss_pred ----------Hhhcc------------------------------cchhhhcccccccCCHHHHHHHHHhceEEEECCCC
Confidence 00000 23567888999999999999999999999999999
Q ss_pred EEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeC
Q 008250 368 YIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALM 447 (572)
Q Consensus 368 ~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~ 447 (572)
.|+++||+++++|||.+|.++++..+ + ..+++|++|||.+++ .+. +++.+++|.++|+++.++
T Consensus 261 ~I~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~~fGe~~~l---~~~------~~~~~~~A~~~~~l~~i~ 323 (355)
T 3beh_A 261 VICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGEMALI---SGE------PRSATVSAATTVSLLSLH 323 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCCEEeehHHh---CCC------CcceEEEECccEEEEEEe
Confidence 99999999999999999999998654 1 478999999999863 222 267999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 008250 448 AEELKFVASQFRRLHSRQVQHT 469 (572)
Q Consensus 448 ~~~~~~l~~~~p~l~~~~l~~~ 469 (572)
+++|+++++++|++..+..+..
T Consensus 324 ~~~f~~ll~~~p~~~~~l~~~l 345 (355)
T 3beh_A 324 SADFQMLCSSSPEIAEIFRKTA 345 (355)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHCHHHHHHHHHHH
Confidence 9999999999998877555443
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=1.4e-31 Score=257.78 Aligned_cols=204 Identities=22% Similarity=0.361 Sum_probs=174.7
Q ss_pred HHHHHHhhHHHHHHHHHHhhHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCChhhhhhcCChhHHHHHHHHHHHHHhhc
Q 008250 260 QTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGVDEENLVQSLPKDLRRDIKRHLCLALVRR 339 (572)
Q Consensus 260 ~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~ll~~ 339 (572)
++++++++.+..+|+++++.+++||+++++|.+|+.||++||+|.|..+++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 367888999999999999999999999999999999999999999998899999999999999999999999998887 8
Q ss_pred CcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhh
Q 008250 340 VPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWA 419 (572)
Q Consensus 340 v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ 419 (572)
+|+|.++++++++.|+..++.+.|+||++|+++||+++++|||.+|.|+++. +| .+ +..+++|++||+.+++.+
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~--~~--~~--~~~l~~G~~fGe~~~~~~ 153 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK--DN--TV--LAILGKGDLIGSDSLTKE 153 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES--SS--CE--EEEECTTCEEECSCCSSS
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE--CC--eE--EEEecCCCCcCcHHhccC
Confidence 9999999999999999999999999999999999999999999999999986 33 23 789999999999987421
Q ss_pred cCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 008250 420 LDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQW 477 (572)
Q Consensus 420 ~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r~~s~~~ 477 (572)
.. ++++++++|+++|+++.|++++|.++++++|++..+.++...+..+...
T Consensus 154 ~~-------~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~l 204 (212)
T 3ukn_A 154 QV-------IKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNL 204 (212)
T ss_dssp SC-------CBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEEC
T ss_pred CC-------CCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcccc
Confidence 11 1378999999999999999999999999999998887777666555443
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=1.8e-30 Score=247.37 Aligned_cols=190 Identities=23% Similarity=0.433 Sum_probs=173.0
Q ss_pred HhhHHHHHHHHHHhhHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCChhhhhhcCChhHHHHHHHHHHHHHhhcCcCCc
Q 008250 265 SLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLFE 344 (572)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~ll~~v~~F~ 344 (572)
+++.+..+|+++++.+++||+++++|.+|+.||++|++|.|. +++.+++++++.||++||.++..+++.++++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 467788999999999999999999999999999999999997 5788999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCC
Q 008250 345 NMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKS 424 (572)
Q Consensus 345 ~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~ 424 (572)
++++++++.|+..++.+.|+||++|+++||+++.+|||.+|.|+++. .+|+ + +..+++|++||+.+++.+ .
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~-~~g~--~--~~~l~~G~~fGe~~~~~~-~--- 151 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM-SDGV--I--ATSLSDGSYFGEICLLTR-E--- 151 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC-TTSC--E--EEEECTTCEESCHHHHHS-S---
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe-cCCe--E--EEEecCCCEechHHHcCC-C---
Confidence 99999999999999999999999999999999999999999999987 4555 3 789999999999987532 2
Q ss_pred CCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHH
Q 008250 425 GVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHT 469 (572)
Q Consensus 425 ~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~ 469 (572)
+++++++|.++|+++.|++++|.++++++|++....++..
T Consensus 152 -----~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~ 191 (198)
T 2ptm_A 152 -----RRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIA 191 (198)
T ss_dssp -----CCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred -----ccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHH
Confidence 2679999999999999999999999999998877655443
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=5.6e-30 Score=244.82 Aligned_cols=189 Identities=26% Similarity=0.426 Sum_probs=170.0
Q ss_pred HHhhHHHHHHHHHHhhHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCChhhhhhcCChhHHHHHHHHHHHHHhhcCcCC
Q 008250 264 QSLTIRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLETRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLF 343 (572)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~ll~~v~~F 343 (572)
++++.+..+|+++++.+++||+++++|.+|+.||++|++|.|. +++.+++++++.||++||.++..+++.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 4678889999999999999999999999999999999999997 578899999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCC
Q 008250 344 ENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPK 423 (572)
Q Consensus 344 ~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~ 423 (572)
.++++++++.|+..++...|+||++|+++|++++.+|||.+|.|+++. .+|++ ..+++|++||+.+++.+ .
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~-----~~l~~G~~fGe~~~~~~-~-- 151 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKE-----MKLSDGSYFGEICLLTR-G-- 151 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCC-----EEEETTCEECHHHHHHC-S--
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeE-----EEEcCCCEeccHHHhcC-C--
Confidence 999999999999999999999999999999999999999999999975 45553 36799999999887532 2
Q ss_pred CCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHH
Q 008250 424 SGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQH 468 (572)
Q Consensus 424 ~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~ 468 (572)
+++++++|.++|+++.|++++|.++++++|++.....+.
T Consensus 152 ------~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~ 190 (202)
T 3bpz_A 152 ------RRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETV 190 (202)
T ss_dssp ------BCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHH
T ss_pred ------CcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHH
Confidence 267999999999999999999999999999876654443
No 5
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.82 E-value=2.3e-19 Score=163.69 Aligned_cols=144 Identities=24% Similarity=0.360 Sum_probs=119.2
Q ss_pred hhhhhhcCChhHHHHHHHHHHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEe
Q 008250 313 EENLVQSLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT 392 (572)
Q Consensus 313 e~~ll~~Lp~~Lr~~i~~~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~ 392 (572)
.+++++.||++||.++..+++.++++++++|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~- 83 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ- 83 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHH
Q 008250 393 DGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHT 469 (572)
Q Consensus 393 ~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~ 469 (572)
+ +.+ +..+++|++||+..++... +. ++..+++|.++|+++.|++++|.++++++|++....++..
T Consensus 84 -~--~~~--~~~~~~G~~fG~~~~~~~~-~~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 84 -D--DEV--VAILGKGDVFGDVFWKEAT-LA------QSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp -T--TEE--EEEEETTCEEECCTTTCSS-CC------BCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred -C--CEE--EEEecCCCEeCcHHHhcCc-cc------ceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 223 7899999999999874211 01 3779999999999999999999999999998877655543
No 6
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.76 E-value=1e-17 Score=158.10 Aligned_cols=179 Identities=12% Similarity=0.105 Sum_probs=120.4
Q ss_pred HHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeeeCCCCee
Q 008250 333 CLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFC 411 (572)
Q Consensus 333 ~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~f 411 (572)
...++++++.|.+++++.++.+...++.+.|+||++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++.+|++|
T Consensus 5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~--~~~~~~g~~~ 82 (194)
T 3dn7_A 5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQT--TQFAIENWWL 82 (194)
T ss_dssp CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEE
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEE--EEEccCCcEE
Confidence 356788899999999999999999999999999999999999999999999999999875 5688887 7899999999
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 008250 412 GEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRR 491 (572)
Q Consensus 412 Ge~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~~~~~~~~ 491 (572)
|+...+....| +..+++|+++|+++.|++++|.+++.++|++....++...+ ....
T Consensus 83 ge~~~~~~~~~--------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~----------------~l~~ 138 (194)
T 3dn7_A 83 SDYMAFQKQQP--------ADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQK----------------SFAA 138 (194)
T ss_dssp CCHHHHHHTCB--------CSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHH----------------HHHH
T ss_pred eehHHHhcCCC--------CceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHH----------------HHHH
Confidence 98754333322 67899999999999999999999999999877654443322 3444
Q ss_pred HHHHHHHHHhhhHHhHHhhhcccccCCCCCCCCcchhhHHHhHHHHHHHhhhhhcc
Q 008250 492 YSKRKKMEQTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAANALRGVHRNR 547 (572)
Q Consensus 492 ~~~r~~~~~~~~~e~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~ 547 (572)
..++.......++++|... .... .|++..+++-..+ +.+.|+.|..
T Consensus 139 ~~~~~~~l~~~~~~~Rl~~-----~L~~---~~~~~~~~t~~~i--A~~lG~sret 184 (194)
T 3dn7_A 139 AQLRSKFQHMYSKEEQYHN-----FSSR---FPEFIQRVPQYLL--ASYLGFTPEY 184 (194)
T ss_dssp HHHHHHHHHHC---------------------------------------------
T ss_pred HHHHHHHHhcCCHHHHHHH-----HHHH---ChHHHHHCCHHHH--HHHhCCCHHH
Confidence 5666667777778777543 2221 1344444444444 4456666654
No 7
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.74 E-value=3.5e-17 Score=153.94 Aligned_cols=151 Identities=17% Similarity=0.228 Sum_probs=125.5
Q ss_pred hhhhhhcCChhH----HHHHHHHHHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEE
Q 008250 313 EENLVQSLPKDL----RRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLE 388 (572)
Q Consensus 313 e~~ll~~Lp~~L----r~~i~~~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~ 388 (572)
+..+.+.++|++ +.+.......++++++|+|.+++++.++.++..++.+.+++|++|+++|++++.+|||.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 444555555543 2344455567899999999999999999999999999999999999999999999999999999
Q ss_pred EEEec-CCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHH
Q 008250 389 SVTTD-GGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQ 467 (572)
Q Consensus 389 v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~ 467 (572)
++..+ +|++.+ +..+.+|++||+.+++ ... ++..+++|+++|+++.|++++|.++++++|++..++++
T Consensus 93 v~~~~~~g~~~~--~~~~~~G~~fGe~~~l-~~~--------~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~ 161 (187)
T 3gyd_A 93 VIKDIPNKGIQT--IAKVGAGAIIGEMSMI-DGM--------PRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLI 161 (187)
T ss_dssp EEEEETTTEEEE--EEEEETTCEESHHHHH-HCC--------CCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEECCCCCeEE--EEEccCCCeeeeHHHh-CCC--------CeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHH
Confidence 98754 687777 7899999999999974 222 26789999999999999999999999999998887766
Q ss_pred HHHHHhh
Q 008250 468 HTFRFYS 474 (572)
Q Consensus 468 ~~~r~~s 474 (572)
...+..+
T Consensus 162 ~l~~~l~ 168 (187)
T 3gyd_A 162 RLLQLLT 168 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544333
No 8
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.74 E-value=2.8e-17 Score=159.14 Aligned_cols=56 Identities=27% Similarity=0.520 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008250 210 KYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQS 265 (572)
Q Consensus 210 ~Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~ 265 (572)
.|..|+||++.|+||+||||++|.+..|++++++++++|++++++.+|.+++.+++
T Consensus 165 ~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 165 SVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999998864
No 9
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.73 E-value=1.3e-17 Score=148.66 Aligned_cols=131 Identities=17% Similarity=0.252 Sum_probs=113.1
Q ss_pred cCChhHHHHHHHHHHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCcee
Q 008250 319 SLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSG 398 (572)
Q Consensus 319 ~Lp~~Lr~~i~~~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~ 398 (572)
++|+.+|.+...+...++++++++|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|++.. +|+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TTE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CCE--
Confidence 6888999999999999999999999999999999999999999999999999999999999999999999954 443
Q ss_pred eeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHH
Q 008250 399 FFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSR 464 (572)
Q Consensus 399 ~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~ 464 (572)
+ +..+.+|++||+..++. .. ++..+++|+++|+++.|++++|.++++++|.++.+
T Consensus 83 ~--~~~~~~G~~fGe~~~l~-~~--------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 83 K--LCTMGPGKVFGELAILY-NC--------TRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp E--EEEECTTCEESCHHHHH-CC--------CCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred E--EEEeCCCCEeccHHHHC-CC--------CcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 3 78999999999999742 22 26789999999999999999999999999977653
No 10
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.72 E-value=1.3e-17 Score=162.60 Aligned_cols=129 Identities=12% Similarity=0.156 Sum_probs=114.5
Q ss_pred HHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeeeCCCCe
Q 008250 332 LCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDF 410 (572)
Q Consensus 332 ~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~ 410 (572)
...++++++|+|.+++++.++.+...++.+.|+||++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++++|++
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~ 85 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAV--VSVFTRGES 85 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTEE
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEeCCCCE
Confidence 3457899999999999999999999999999999999999999999999999999999875 5688877 889999999
Q ss_pred echhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008250 411 CGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFR 471 (572)
Q Consensus 411 fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r 471 (572)
||+..++ ... ++..+++|+++|+++.|++++|.+++.++|.+...+++...+
T Consensus 86 ~G~~~~~-~~~--------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 137 (237)
T 3fx3_A 86 FGEAVAL-RNT--------PYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFG 137 (237)
T ss_dssp ECHHHHH-HTC--------CCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred echHHHh-cCC--------CCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999975 222 267899999999999999999999999999988766655544
No 11
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.72 E-value=2.3e-17 Score=150.88 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeC
Q 008250 327 DIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLK 406 (572)
Q Consensus 327 ~i~~~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~ 406 (572)
+-....+.++++++++|.+++++.++.|+..++.+.|++|++|+++|++++.+|||.+|.|+++...+|++.+ +..+.
T Consensus 30 ~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~--~~~~~ 107 (161)
T 3idb_B 30 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGNYD 107 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEE--EEEEE
T ss_pred HHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEE--EEEcC
Confidence 3345566789999999999999999999999999999999999999999999999999999999877888877 88999
Q ss_pred CCCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHH
Q 008250 407 EGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHS 463 (572)
Q Consensus 407 ~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~ 463 (572)
+|++||+.+++ ... ++..+++|+++|+++.|++++|.++++++|.++.
T Consensus 108 ~G~~fGe~~~~---~~~------~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~ 155 (161)
T 3idb_B 108 NRGSFGELALM---YNT------PRAATITATSPGALWGLDRVTFRRIIVKNNAKKR 155 (161)
T ss_dssp SCCEECGGGGT---CCC------CCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSC
T ss_pred CCCEechHHHH---cCC------CcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHH
Confidence 99999999874 222 2679999999999999999999999999997654
No 12
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.71 E-value=6.5e-17 Score=144.06 Aligned_cols=131 Identities=18% Similarity=0.231 Sum_probs=109.0
Q ss_pred HHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEec-CCceee-eeeeeeCCCCeec
Q 008250 335 ALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGF-FNRGFLKEGDFCG 412 (572)
Q Consensus 335 ~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~g~~~~-~~~~~l~~Gd~fG 412 (572)
++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ ..+..+.+|++||
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG 85 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFG 85 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEEC
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEec
Confidence 56889999999999999999999999999999999999999999999999999998644 354422 0147899999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 008250 413 EELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYS 474 (572)
Q Consensus 413 e~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r~~s 474 (572)
+.+++ .+. ++..+++|.++|+++.|++++|.+++.++|.+..++++...+..+
T Consensus 86 ~~~~~---~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~ 138 (142)
T 3mdp_A 86 VSSLI---KPY------HYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVL 138 (142)
T ss_dssp GGGSS---TTC------BCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred hHHHc---CCC------CceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence 98863 232 367899999999999999999999999999998877777665444
No 13
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.71 E-value=4.9e-18 Score=150.78 Aligned_cols=129 Identities=85% Similarity=1.360 Sum_probs=107.9
Q ss_pred HHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechh
Q 008250 335 ALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEE 414 (572)
Q Consensus 335 ~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~ 414 (572)
++++++++|..++++.++.|+..++.+.|++|++|+++||+++.+|||.+|.|++....+|++.+..+..+.+|++||+.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 45789999999999999999999999999999999999999999999999999976566788776222399999999999
Q ss_pred hhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHH
Q 008250 415 LLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHS 463 (572)
Q Consensus 415 ~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~ 463 (572)
.+++.+.+.+..+.++++++++|+++|+++.|++++|.++++++|++++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 8522233332222334678999999999999999999999999987654
No 14
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.71 E-value=4e-16 Score=149.48 Aligned_cols=126 Identities=18% Similarity=0.271 Sum_probs=109.3
Q ss_pred hhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeeeCCCCeechhh
Q 008250 337 VRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEEL 415 (572)
Q Consensus 337 l~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~ 415 (572)
++++|+|.+++++.++.++..++.+.|+||++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++++|++||+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERT--LALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEE--EEEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEeehh
Confidence 46789999999999999999999999999999999999999999999999999875 5688877 88999999999987
Q ss_pred hhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008250 416 LTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFY 473 (572)
Q Consensus 416 l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r~~ 473 (572)
++. +. ++..+++|+++|+++.+++++|.+++.++|++....++...+..
T Consensus 79 ~~~---~~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~ 127 (216)
T 4ev0_A 79 LLD---EG------ERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRL 127 (216)
T ss_dssp HHH---CC------BCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hcC---CC------CcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 642 22 26789999999999999999999999999998887766655433
No 15
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.71 E-value=1.3e-16 Score=154.77 Aligned_cols=129 Identities=19% Similarity=0.296 Sum_probs=113.6
Q ss_pred HHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCeec
Q 008250 334 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 334 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 412 (572)
.++++++|+|.+++++.++.++..++.+.|+||++|+++|++++.+|||.+|.|+++..+ +|++.+ +.++.+|++||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 82 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERV--LGDIYAPGVVG 82 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEE--EEEEESSEEES
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEE--EEecCCCCEEe
Confidence 467899999999999999999999999999999999999999999999999999998764 688877 88999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008250 413 EELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFY 473 (572)
Q Consensus 413 e~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r~~ 473 (572)
+.+++ .+. ++..+++|+++|+++.|++++|.+++.++|.+...+++...+..
T Consensus 83 ~~~~~---~~~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 134 (231)
T 3e97_A 83 ETAVL---AHQ------ERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRV 134 (231)
T ss_dssp TTTTT---CCC------CCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred eHHHh---CCC------CceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 99863 222 36799999999999999999999999999999887777665544
No 16
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.70 E-value=1.1e-16 Score=143.65 Aligned_cols=123 Identities=24% Similarity=0.355 Sum_probs=109.0
Q ss_pred HHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCeec
Q 008250 334 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 334 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 412 (572)
.++++++++|.+++++.++.++..++.+.+++|++|+++|++++.+|||.+|.++++..+ +|++.+ +..+.+|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENM--LAVVGPSELIG 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEE--EEEECTTCEES
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEE--EEEcCCcCEec
Confidence 467899999999999999999999999999999999999999999999999999998754 588877 78999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHH
Q 008250 413 EELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQ 467 (572)
Q Consensus 413 e~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~ 467 (572)
+.+++ ... ++..+++|+++|+++.|++++|.++++++|++....++
T Consensus 82 ~~~~~---~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~ 127 (149)
T 2pqq_A 82 ELSLF---DPG------PRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLR 127 (149)
T ss_dssp GGGGT---SCE------ECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHH
T ss_pred hHHhc---CCC------CcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHH
Confidence 98763 222 36789999999999999999999999999987664443
No 17
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.69 E-value=1.1e-16 Score=154.88 Aligned_cols=128 Identities=18% Similarity=0.256 Sum_probs=101.9
Q ss_pred HHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeeeCCCCeec
Q 008250 334 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 334 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fG 412 (572)
...++..++|.+++++.++.+...++.+.|+||++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++++|++||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 87 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELV--LGYFGSGEFVG 87 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEE
Confidence 46788999999999999999999999999999999999999999999999999999864 4688877 88999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHh-----HHHHHHHHHHHHH
Q 008250 413 EELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQF-----RRLHSRQVQHTFR 471 (572)
Q Consensus 413 e~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~-----p~l~~~~l~~~~r 471 (572)
+..++. +. +++..+++|+++|+++.|++++|.+++.++ |++...+++...+
T Consensus 88 ~~~~~~---~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~ 143 (230)
T 3iwz_A 88 EMGLFI---ES-----DTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSK 143 (230)
T ss_dssp CGGGTS---CC-----SBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHH
T ss_pred ehhhhc---CC-----CCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHH
Confidence 998742 21 136789999999999999999999999999 9887766655443
No 18
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.69 E-value=3.2e-16 Score=141.58 Aligned_cols=127 Identities=15% Similarity=0.222 Sum_probs=108.1
Q ss_pred HHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCeec
Q 008250 334 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 334 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 412 (572)
.++++++++|..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +..+.+|++||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 88 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 88 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----C--CEEECTTEEES
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEccCCCeec
Confidence 578899999999999999999999999999999999999999999999999999998654 577777 78999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHH
Q 008250 413 EELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTF 470 (572)
Q Consensus 413 e~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~ 470 (572)
+..++ .+. +++..+++|+++|+++.|++++|.++++++|++...+++...
T Consensus 89 ~~~~~---~~~-----~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~ 138 (154)
T 2z69_A 89 EAMMF---MDT-----PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLS 138 (154)
T ss_dssp GGGGG---SSC-----SBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHhhc---cCC-----CCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHH
Confidence 99874 211 126789999999999999999999999999988776655443
No 19
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.69 E-value=6e-17 Score=157.56 Aligned_cols=128 Identities=13% Similarity=0.179 Sum_probs=112.2
Q ss_pred HHHHhhcCcCCccCCHHHHHHHHhc--cEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeeeCCCC
Q 008250 333 CLALVRRVPLFENMDERLLDAICER--LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGD 409 (572)
Q Consensus 333 ~~~ll~~v~~F~~l~~~~l~~l~~~--l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd 409 (572)
..+.++++++|..++++.++.++.. ++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++.+|+
T Consensus 16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--l~~~~~G~ 93 (232)
T 1zyb_A 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTV--IEQIEAPY 93 (232)
T ss_dssp HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEE--EEEEESSE
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEE--EEEccCCC
Confidence 4567899999999999999999998 99999999999999999999999999999999864 4688877 78999999
Q ss_pred eechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHH
Q 008250 410 FCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTF 470 (572)
Q Consensus 410 ~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~ 470 (572)
+||+..++ ... +++..+++|+++|+++.|++++|.+++.++|++....++...
T Consensus 94 ~fG~~~~~---~~~-----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~ 146 (232)
T 1zyb_A 94 LIEPQSLF---GMN-----TNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVS 146 (232)
T ss_dssp EECGGGGS---SSC-----CBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHH
T ss_pred eeeehHHh---CCC-----CCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHH
Confidence 99999874 221 126789999999999999999999999999988776665543
No 20
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.68 E-value=4.2e-16 Score=150.70 Aligned_cols=128 Identities=20% Similarity=0.370 Sum_probs=113.9
Q ss_pred HHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCeec
Q 008250 334 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 334 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 412 (572)
.++++++|+|.+++++.++.++..++.+.|+||++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++.+|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 82 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENL--LTIMGPSDMFG 82 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEE--EEEecCCCEEe
Confidence 467899999999999999999999999999999999999999999999999999998764 588877 88999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008250 413 EELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRF 472 (572)
Q Consensus 413 e~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r~ 472 (572)
+.+++ .+. ++..+++|+++|+++.|++++|.+++.++|.+....++...+.
T Consensus 83 ~~~~~---~~~------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 133 (227)
T 3d0s_A 83 ELSIF---DPG------PRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARR 133 (227)
T ss_dssp CHHHH---SCS------CCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred eHHHc---CCC------CceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 99874 222 2678999999999999999999999999999888777665543
No 21
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.68 E-value=1.3e-15 Score=146.41 Aligned_cols=127 Identities=16% Similarity=0.134 Sum_probs=110.8
Q ss_pred HHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeeeCCCCe--e
Q 008250 335 ALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDF--C 411 (572)
Q Consensus 335 ~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~--f 411 (572)
++++++|+|.+++++.++.+...++.+.|+||++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++++|++ |
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~~~ 80 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREIT--LYRLFDMDMCLL 80 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEESG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEE--EEecCCCCeeeh
Confidence 5788999999999999999999999999999999999999999999999999999875 4588877 789999999 6
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008250 412 GEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRF 472 (572)
Q Consensus 412 Ge~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r~ 472 (572)
|+.+++ .+. ++..+++|+++|+++.|++++|.+++.++|++....++...+.
T Consensus 81 g~~~~~---~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 132 (220)
T 3dv8_A 81 SASCIM---RSI------QFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATR 132 (220)
T ss_dssp GGGGGC---TTC------CCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hHHHHh---CCC------CCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 887763 222 2678999999999999999999999999999888766655443
No 22
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.66 E-value=1e-15 Score=147.88 Aligned_cols=129 Identities=15% Similarity=0.208 Sum_probs=113.0
Q ss_pred HHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeeeCCCCeec
Q 008250 334 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 334 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fG 412 (572)
.++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++++|++||
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 85 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 85 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBC--CCEECTTEEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEee
Confidence 46789999999999999999999999999999999999999999999999999999864 4578777 78999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008250 413 EELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRF 472 (572)
Q Consensus 413 e~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r~ 472 (572)
+..++ .+. |.+..+++|+++|+++.|++++|.+++.++|.+....++...+.
T Consensus 86 ~~~~~---~~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 137 (227)
T 3dkw_A 86 EAMMF---MDT-----PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTR 137 (227)
T ss_dssp CTTTT---TTC-----SBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHH
T ss_pred eHHhc---CCC-----CCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 98863 211 12678999999999999999999999999999887766665543
No 23
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.66 E-value=6.8e-16 Score=148.01 Aligned_cols=191 Identities=14% Similarity=0.112 Sum_probs=105.9
Q ss_pred CcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeeeCCCCeechhhhhh
Q 008250 340 VPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEELLTW 418 (572)
Q Consensus 340 v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~ 418 (572)
-|.|...++...+.+...++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++++|++||+..++.
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~~~~~~ 81 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLE--IDEIKPVQIIASGFIFS 81 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEE--EEEECSSEESSGGGTTS
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEeeeHHHhc
Confidence 36778888999999999999999999999999999999999999999999875 4688877 88999999999998742
Q ss_pred hcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 008250 419 ALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKKM 498 (572)
Q Consensus 419 ~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~~~~~~~~~~~r~~~ 498 (572)
.. +++..+++|+++|+++.|++++|.+++.++|++...+++...+.. ....++...
T Consensus 82 ---~~-----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~----------------~~~~~~~~~ 137 (213)
T 1o5l_A 82 ---SE-----PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHF----------------RVVSEKLFF 137 (213)
T ss_dssp ---SS-----CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH----------------HHHHHHHHH
T ss_pred ---CC-----CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH----------------HHHHHHHHH
Confidence 11 136789999999999999999999999999988776665544321 223455555
Q ss_pred HHhhhHHhHHhhhcccccCCCCCCCCcchhhHHHhHHHHHHHhhhhhcccccchhcccCCCCCCCCC
Q 008250 499 EQTRKEEEEEEASEGVQSSSTGGGSYSIGATFLATRFAANALRGVHRNRNAKSARELVKLQKPPEPD 565 (572)
Q Consensus 499 ~~~~~~e~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (572)
....++++|... ....-+...+ ...+++++-.-+.+.|++|.. .++.+..+.+.+..+
T Consensus 138 l~~~~~~~Rl~~-----~L~~~~~~~g-~~~~~~t~~~lA~~lg~sr~t---vsR~l~~L~~~G~I~ 195 (213)
T 1o5l_A 138 LTTKTLREKLMN-----FLVRHMNEKR-ELTLPVTLEELSRLFGCARPA---LSRVFQELEREGYIE 195 (213)
T ss_dssp HHCC---------------------------------------------------------------
T ss_pred HhhCCHHHHHHH-----HHHHHhccCC-cccCCCCHHHHHHHhCCCHHH---HHHHHHHHHHCCeEE
Confidence 666667776433 1111111111 223444444445566666654 445555555555443
No 24
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.65 E-value=1.3e-15 Score=135.07 Aligned_cols=122 Identities=25% Similarity=0.373 Sum_probs=106.5
Q ss_pred HHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 333 CLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 333 ~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
..++++++++|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.++++..+ + ..+.+|++||
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~-----~~~~~G~~~G 80 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFG 80 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---C-----EEECTTCEEC
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---c-----ceECCCCEee
Confidence 3578999999999999999999999999999999999999999999999999999997644 1 3689999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008250 413 EELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFR 471 (572)
Q Consensus 413 e~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r 471 (572)
+.+++. .. ++..+++|+++|+++.|++++|.++++++|++....++...+
T Consensus 81 ~~~~~~-~~--------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 130 (138)
T 1vp6_A 81 EMALIS-GE--------PRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALE 130 (138)
T ss_dssp HHHHHH-CC--------CCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ehHhcc-CC--------CceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 998742 22 256899999999999999999999999999988766655444
No 25
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.64 E-value=1.5e-15 Score=147.23 Aligned_cols=124 Identities=13% Similarity=0.229 Sum_probs=107.0
Q ss_pred cCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCeechhhhh
Q 008250 339 RVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCGEELLT 417 (572)
Q Consensus 339 ~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~ 417 (572)
.+|+|..++++.++.+...++.+.|+||++|+++|++++.+|||.+|.|+++..+ +|++.+ +.++.+|++||+.+++
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G~~~~~ 91 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHI--SRIVKPGQFFGMRPYF 91 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCE--EEEECTTCEESHHHHH
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEeCCCCEeeeehhh
Confidence 5788999999999999999999999999999999999999999999999998654 578877 7899999999999874
Q ss_pred hhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008250 418 WALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFY 473 (572)
Q Consensus 418 ~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r~~ 473 (572)
. .. ++..+++|+++|+++.|++++|.+++.++|++....++...+..
T Consensus 92 ~-~~--------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 138 (232)
T 2gau_A 92 A-EE--------TCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKEL 138 (232)
T ss_dssp H-TS--------CCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred C-CC--------CcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 2 22 26789999999999999999999999999998887776655433
No 26
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.64 E-value=1.5e-15 Score=137.68 Aligned_cols=118 Identities=17% Similarity=0.247 Sum_probs=104.3
Q ss_pred HHHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCe
Q 008250 331 HLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDF 410 (572)
Q Consensus 331 ~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~ 410 (572)
....++++++++|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++. +|+. +..+.+|++
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~~----~~~~~~G~~ 107 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNEW----ATSVGEGGS 107 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTEE----EEEECTTCE
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCEE----EEEecCCCE
Confidence 4456789999999999999999999999999999999999999999999999999999986 4442 678999999
Q ss_pred echhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHH
Q 008250 411 CGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHS 463 (572)
Q Consensus 411 fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~ 463 (572)
||+.+++. .. ++.++++|+++|+++.|++++|.+++.++|.++.
T Consensus 108 fGe~~~~~-~~--------~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~ 151 (154)
T 3pna_A 108 FGELALIY-GT--------PRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 151 (154)
T ss_dssp ECCHHHHH-CC--------CCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC-
T ss_pred eeehHhhc-CC--------CcceEEEECcceEEEEEeHHHHHHHHHhChHHHh
Confidence 99998753 22 2678999999999999999999999999986544
No 27
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.63 E-value=2.8e-15 Score=144.21 Aligned_cols=121 Identities=8% Similarity=0.148 Sum_probs=109.5
Q ss_pred HHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechh
Q 008250 335 ALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEE 414 (572)
Q Consensus 335 ~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~ 414 (572)
.+++++|+|..++++.++.++..++.+.|+||++|+++||+++.+|||.+|.|+++...+|++.+ +.++.+|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~~G~- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFT--LAILEAGDIFCT- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEE--EEEEETTCEEES-
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEeCC-
Confidence 45788999999999999999999999999999999999999999999999999997667788888 889999999998
Q ss_pred hhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008250 415 LLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFY 473 (572)
Q Consensus 415 ~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r~~ 473 (572)
| +..+++|+++|+++.|++++|.+++.++|++....++...+.+
T Consensus 81 -------~--------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~ 124 (220)
T 2fmy_A 81 -------H--------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLL 124 (220)
T ss_dssp -------C--------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred -------c--------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 2 5689999999999999999999999999998887776655433
No 28
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.62 E-value=3.5e-15 Score=150.67 Aligned_cols=138 Identities=16% Similarity=0.228 Sum_probs=120.3
Q ss_pred hhhhcCChhHHHHHHHHHHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecC
Q 008250 315 NLVQSLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDG 394 (572)
Q Consensus 315 ~ll~~Lp~~Lr~~i~~~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~ 394 (572)
....++|+..|.+...++..++++++++|.+++++.++.|+..++.+.|++|++|+++||+++.+|||.+|.|++.. +
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--~ 96 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--E 96 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--T
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--C
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999854 4
Q ss_pred CceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHH
Q 008250 395 GRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQ 467 (572)
Q Consensus 395 g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~ 467 (572)
|+ + +..+.+|++||+.+++ ... +++++++|.++|+++.|++++|.+++.++|........
T Consensus 97 g~--~--~~~~~~G~~fGe~~ll---~~~------~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~ 156 (299)
T 3shr_A 97 GV--K--LCTMGPGKVFGELAIL---YNC------TRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYM 156 (299)
T ss_dssp TE--E--EEEECTTCEESCSGGG---TTT------BCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred CE--E--EEEeCCCCeeeHhHHh---cCC------CCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHH
Confidence 43 2 6899999999999874 222 37899999999999999999999999999876554433
No 29
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.62 E-value=9.2e-15 Score=139.29 Aligned_cols=121 Identities=16% Similarity=0.249 Sum_probs=102.4
Q ss_pred cCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeeeCCCCeechhhhhhh
Q 008250 341 PLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEELLTWA 419 (572)
Q Consensus 341 ~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~ 419 (572)
+++..++++.++.+...++.+.|+||++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++.+|++||+..++.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~~~~- 78 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLFE- 78 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEE--EEEEETTCEESCTTTTS-
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEeeeHHHhc-
Confidence 3566799999999999999999999999999999999999999999999875 5688877 88999999999998742
Q ss_pred cCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008250 420 LDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFR 471 (572)
Q Consensus 420 ~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r 471 (572)
+. +++..+++|+++|+++.+++++|.+++.++|++....++...+
T Consensus 79 --~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 123 (210)
T 3ryp_A 79 --EG-----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR 123 (210)
T ss_dssp --TT-----CBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred --CC-----CCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHH
Confidence 21 1367899999999999999999999999999988766655443
No 30
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.61 E-value=1.8e-14 Score=136.98 Aligned_cols=119 Identities=24% Similarity=0.299 Sum_probs=101.1
Q ss_pred CCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCeechhhhhhhcCCCC
Q 008250 346 MDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCGEELLTWALDPKS 424 (572)
Q Consensus 346 l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~ 424 (572)
|+++.++.++..++.+.|+||++|+++|++++.+|||.+|.|+++..+ +|++.+ +.++.+|++||+..++.....
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~~~~~~~~~~-- 76 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMI--IGYLNSGDFFGELGLFEKEGS-- 76 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEESCTTTCC------
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCCcccHHHhcCCCC--
Confidence 588999999999999999999999999999999999999999998754 588877 889999999999987422110
Q ss_pred CCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008250 425 GVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFR 471 (572)
Q Consensus 425 ~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r 471 (572)
.+++..+++|+++|+++.|++++|.++++++|.+...+++...+
T Consensus 77 ---~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 120 (207)
T 2oz6_A 77 ---EQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMAD 120 (207)
T ss_dssp ----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ---CCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 00267899999999999999999999999999988766665444
No 31
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.60 E-value=4.5e-15 Score=143.06 Aligned_cols=118 Identities=11% Similarity=0.057 Sum_probs=106.1
Q ss_pred HhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhh
Q 008250 336 LVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEEL 415 (572)
Q Consensus 336 ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ 415 (572)
+++++|+|..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++...+|++.+ +.++.+|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~fG--- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREIS--LFYLTSGDMFC--- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEE--EEEEETTCEEE---
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEec---
Confidence 3678899999999999999999999999999999999999999999999999998666788887 88999999999
Q ss_pred hhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008250 416 LTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFR 471 (572)
Q Consensus 416 l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r 471 (572)
. ++..+++|+++|+++.|++++|.+++.++|.+...+++...+
T Consensus 76 -----~--------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 118 (222)
T 1ft9_A 76 -----M--------HSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGR 118 (222)
T ss_dssp -----S--------CSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred -----C--------CCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 1 267899999999999999999999999999887766655544
No 32
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.59 E-value=8.9e-15 Score=150.07 Aligned_cols=128 Identities=14% Similarity=0.206 Sum_probs=112.4
Q ss_pred HHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecC-CceeeeeeeeeCCCCeec
Q 008250 334 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDG-GRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 334 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~-g~~~~~~~~~l~~Gd~fG 412 (572)
.++++++|+|.++++++++.|+..++.+.|++|++|+++||+++.+|||.+|.|+++..+. |++ + +.++.+|++||
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~--~~~~~~G~~fG 88 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-I--IARALPGMIVG 88 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-E--EEEECTTCEES
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-E--EEEecCCCEee
Confidence 3678999999999999999999999999999999999999999999999999999987654 554 5 78999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 008250 413 EELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFYS 474 (572)
Q Consensus 413 e~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r~~s 474 (572)
+.+++.+ . +++++++|+++|+++.|++++|.+++ ++|.+..++++...+...
T Consensus 89 e~~l~~~-~--------~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~~ 140 (333)
T 4ava_A 89 EIALLRD-S--------PRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRLA 140 (333)
T ss_dssp HHHHHHT-C--------BCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHHH
T ss_pred HHHhcCC-C--------CceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHHH
Confidence 9987422 2 36799999999999999999999999 999988877766655443
No 33
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.58 E-value=3e-15 Score=135.32 Aligned_cols=61 Identities=16% Similarity=0.353 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008250 210 KYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRL 270 (572)
Q Consensus 210 ~Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~ 270 (572)
.|..|+||++.|+||+||||++|.+..+++++++.+++|++++++.+|.+++.+.+...+.
T Consensus 84 s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~ 144 (155)
T 2a9h_A 84 SYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQER 144 (155)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred cccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999997665433
No 34
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.58 E-value=3.5e-14 Score=140.52 Aligned_cols=118 Identities=15% Similarity=0.264 Sum_probs=100.4
Q ss_pred ccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeeeCCCCeechhhhhhhcCC
Q 008250 344 ENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEELLTWALDP 422 (572)
Q Consensus 344 ~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~ 422 (572)
..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++.+|++||+..++. .
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~~~G~~~Ge~~~~~---~ 129 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLFE---E 129 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEE--EEEEETTCEESCTTTTS---T
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehHHhC---C
Confidence 5589999999999999999999999999999999999999999999875 5688877 88999999999998742 2
Q ss_pred CCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008250 423 KSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFR 471 (572)
Q Consensus 423 ~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r 471 (572)
. +++..+++|+++|+++.|++++|.+++.++|++...+++...+
T Consensus 130 ~-----~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~ 173 (260)
T 3kcc_A 130 G-----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR 173 (260)
T ss_dssp T-----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred C-----CCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 1 1367899999999999999999999999999987766655443
No 35
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.58 E-value=1.4e-15 Score=134.54 Aligned_cols=124 Identities=15% Similarity=0.239 Sum_probs=103.8
Q ss_pred ChhHHHHHHHHHHHHHhhcCcCCccCCHHHHHHHHhccEEEEeC-CCcEEEccCCCCCeEEEEEeeEEEEEEecCCceee
Q 008250 321 PKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFT-DSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGF 399 (572)
Q Consensus 321 p~~Lr~~i~~~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~-~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~ 399 (572)
||+.|.+-......++++++++|..++++.++.|+..++.+.++ +|++|+++|++++.+|||.+|.|+++. .+|++
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~g~~-- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH-PDGKV-- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC-SSSCE--
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc-CCCcE--
Confidence 44444444445566789999999999999999999999999999 999999999999999999999999985 45554
Q ss_pred eeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEE-EEeccceeeeeCHHHHHHHHHHhH
Q 008250 400 FNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTV-RALKEVEAFALMAEELKFVASQFR 459 (572)
Q Consensus 400 ~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv-~Alt~~~l~~l~~~~~~~l~~~~p 459 (572)
..+.+|++||+..++ ... ++..++ +|+++|+++.|++++|.+++++++
T Consensus 79 ---~~l~~G~~fG~~~~~---~~~------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 79 ---ENLFMGNSFGITPTL---DKQ------YMHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp ---EEECTTCEESCCSSS---CCE------ECCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred ---EEecCCCccChhHhc---CCC------cceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 457899999998863 222 255688 999999999999999999987654
No 36
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.57 E-value=8.8e-15 Score=158.14 Aligned_cols=59 Identities=22% Similarity=0.349 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008250 210 KYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTI 268 (572)
Q Consensus 210 ~Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~ 268 (572)
.|..|+||++.|+||+||||+.|.+..+++|+++++++|++++++.+|.+.+.++....
T Consensus 375 s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~ 433 (514)
T 2r9r_B 375 SIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 433 (514)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred chhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999999999887766554
No 37
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.56 E-value=9.9e-15 Score=147.31 Aligned_cols=128 Identities=20% Similarity=0.421 Sum_probs=112.9
Q ss_pred HHHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEec--CCceeeeeeeeeCCC
Q 008250 331 HLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD--GGRSGFFNRGFLKEG 408 (572)
Q Consensus 331 ~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~--~g~~~~~~~~~l~~G 408 (572)
.....+++++++|..++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+++|
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~--~~~l~~G 230 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVF--LRTLGKG 230 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEE--EEEEETT
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceE--EEEcCCC
Confidence 345678899999999999999999999999999999999999999999999999999998865 677776 7899999
Q ss_pred CeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHH
Q 008250 409 DFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHT 469 (572)
Q Consensus 409 d~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~ 469 (572)
++||+.+++ ... +++++++|.++|+++.|++++|.+++.++|++..+.++..
T Consensus 231 ~~fGe~~ll---~~~------~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l 282 (299)
T 3shr_A 231 DWFGEKALQ---GED------VRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDA 282 (299)
T ss_dssp CEECGGGGS---SSE------ECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHH
T ss_pred CEeChHHHh---CCC------CcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHH
Confidence 999999873 222 3779999999999999999999999999998766555443
No 38
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.53 E-value=1.1e-13 Score=138.93 Aligned_cols=127 Identities=22% Similarity=0.325 Sum_probs=109.5
Q ss_pred HHHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEec-CC-ceeeeeeeeeCCC
Q 008250 331 HLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GG-RSGFFNRGFLKEG 408 (572)
Q Consensus 331 ~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~g-~~~~~~~~~l~~G 408 (572)
.+...++++++.|..+++..+..++..++.+.+.+|++|+++|++++.+|||.+|.|+++... +| ++.. +..+++|
T Consensus 153 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~--~~~l~~G 230 (291)
T 2qcs_B 153 KMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVE--VGRLGPS 230 (291)
T ss_dssp HHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEE--EEEECTT
T ss_pred HHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEE--EEEeCCC
Confidence 344567788999999999999999999999999999999999999999999999999998644 33 4445 7899999
Q ss_pred CeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHH
Q 008250 409 DFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQH 468 (572)
Q Consensus 409 d~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~ 468 (572)
++|||.+++ .+. +++++++|.++|+++.|++++|.+++.++|++..+.++.
T Consensus 231 ~~fGe~~ll---~~~------~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~ 281 (291)
T 2qcs_B 231 DYFGEIALL---MNR------PKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQ 281 (291)
T ss_dssp CEECSGGGT---CCC------CCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHH
T ss_pred CEecHHHHc---CCC------CcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHH
Confidence 999999873 222 277999999999999999999999999999877655544
No 39
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.53 E-value=6e-14 Score=148.45 Aligned_cols=126 Identities=17% Similarity=0.210 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeC
Q 008250 327 DIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLK 406 (572)
Q Consensus 327 ~i~~~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~ 406 (572)
+-......+.++++++|.+++++.+..|+..++.+.|++|++|+++||.++.+|||.+|.|+++...+|++.+ +..+.
T Consensus 137 ~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~--v~~l~ 214 (416)
T 3tnp_B 137 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGNYD 214 (416)
T ss_dssp HHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEE--EEEEE
T ss_pred HHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEE--EEEec
Confidence 3345567889999999999999999999999999999999999999999999999999999999877888877 78999
Q ss_pred CCCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHH
Q 008250 407 EGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHS 463 (572)
Q Consensus 407 ~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~ 463 (572)
+|++||+.+++ ... ++.++++|+++|+++.|++++|..++.++|....
T Consensus 215 ~G~~fGe~all---~~~------pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~ 262 (416)
T 3tnp_B 215 NRGSFGELALM---YNT------PKAATITATSPGALWGLDRVTFRRIIVKNNAKKR 262 (416)
T ss_dssp SCCEECGGGGT---SCC------CCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHS
T ss_pred CCCEEeeHHHh---cCC------CcccEEEEccCeEEEEEeehhhhhhhhcchhHHH
Confidence 99999999874 222 3789999999999999999999999999987654
No 40
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.52 E-value=1.2e-13 Score=138.59 Aligned_cols=127 Identities=16% Similarity=0.239 Sum_probs=111.3
Q ss_pred HHHHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCC
Q 008250 330 RHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGD 409 (572)
Q Consensus 330 ~~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd 409 (572)
.+...++++++++|.+++++.++.++..++.+.+++|++|+++||+++.+|+|.+|.|+++. +|+ . +..+.+|+
T Consensus 34 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~g~--~--~~~l~~G~ 107 (291)
T 2qcs_B 34 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE--W--ATSVGEGG 107 (291)
T ss_dssp HHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE--TTE--E--EEEECTTC
T ss_pred HHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE--CCe--E--EEEcCCCC
Confidence 44567889999999999999999999999999999999999999999999999999999987 443 2 68999999
Q ss_pred eechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008250 410 FCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFR 471 (572)
Q Consensus 410 ~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r 471 (572)
+||+.+++ .+. ++.++++|.++|+++.|++++|.+++.++|.+..+.+....+
T Consensus 108 ~fGe~~l~---~~~------~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (291)
T 2qcs_B 108 SFGELALI---YGT------PRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 160 (291)
T ss_dssp EECGGGGT---CCC------BCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHh---cCC------CCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99998863 222 377999999999999999999999999999887766665544
No 41
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.52 E-value=4.6e-14 Score=137.64 Aligned_cols=121 Identities=16% Similarity=0.137 Sum_probs=105.7
Q ss_pred HHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 333 CLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 333 ~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
..++++++++|.+++++.++.++..++.+.+++|++|+++||+++.+|||.+|.|+++. +|+. +..+.+|++||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~--~~~~----~~~~~~g~~fG 78 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV--NDNK----VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES--TTSC----CEEECTTCEEC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE--CCEE----EEecCCCCeee
Confidence 46788999999999999999999999999999999999999999999999999999885 3443 67899999999
Q ss_pred hhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHH
Q 008250 413 EELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQH 468 (572)
Q Consensus 413 e~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~ 468 (572)
+.+++. .. +++++++|.++|+++.|++++|.+++.++|..+......
T Consensus 79 e~~l~~---~~------~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 125 (246)
T 3of1_A 79 ELALMY---NS------PRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDD 125 (246)
T ss_dssp HHHHHH---TC------CCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHH
T ss_pred hhHHhc---CC------CCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHH
Confidence 998753 22 267999999999999999999999999998765544433
No 42
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.52 E-value=5.2e-14 Score=137.30 Aligned_cols=118 Identities=19% Similarity=0.267 Sum_probs=105.0
Q ss_pred HHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCee
Q 008250 332 LCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFC 411 (572)
Q Consensus 332 ~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 411 (572)
+...++++++.|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.++++..+++ + +..+++|++|
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~---~--~~~l~~g~~f 196 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG---V--INKLKDHDYF 196 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE---E--EEEEETTCEE
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc---e--EEEcCCCCcc
Confidence 3456778899999999999999999999999999999999999999999999999999876554 3 7899999999
Q ss_pred chhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHH
Q 008250 412 GEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHS 463 (572)
Q Consensus 412 Ge~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~ 463 (572)
||.+++. .. +++++++|.++|+++.|++++|.+++..+|++..
T Consensus 197 Ge~~~~~---~~------~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 197 GEVALLN---DL------PRQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp CHHHHHH---TC------BCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred cHHHHhC---CC------CcccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 9999753 22 2679999999999999999999999999997644
No 43
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.52 E-value=1.5e-13 Score=123.73 Aligned_cols=86 Identities=19% Similarity=0.166 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----hhHHHHHHHHHHhhH
Q 008250 211 YCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQT------YLQS----LTIRLEEMRIKRRDS 280 (572)
Q Consensus 211 Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~------~l~~----~~~~~~~~~~~~~~~ 280 (572)
|..|+||++.|+||+||||++|.+..+++++++.+++|++++++.++.++. +.+. .+....+..++++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999999999999999999999999999999999999886 3332 244455666778899
Q ss_pred HHHHhhcCCChhHHHH
Q 008250 281 EQWMHHRLLPPDLRER 296 (572)
Q Consensus 281 ~~~m~~~~lp~~L~~r 296 (572)
++++++++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999999875
No 44
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.49 E-value=1.7e-13 Score=134.56 Aligned_cols=124 Identities=10% Similarity=0.113 Sum_probs=106.1
Q ss_pred HhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeeeCCCCeechh
Q 008250 336 LVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEE 414 (572)
Q Consensus 336 ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~ 414 (572)
++.++..+..+++++++.+...++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++++|++||+
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~- 86 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKL--LYYAGGNSLIGK- 86 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECC-
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEee-
Confidence 344445558899999999999999999999999999999999999999999999875 5688877 889999999999
Q ss_pred hhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008250 415 LLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFY 473 (572)
Q Consensus 415 ~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r~~ 473 (572)
.+ .+ . +..+++|+++|+++.|++++|.+++.++|++....++...+..
T Consensus 87 ~l----~~------~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l 134 (250)
T 3e6c_C 87 LY----PT------G-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKV 134 (250)
T ss_dssp CS----CC------S-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred ec----CC------C-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 32 11 1 4589999999999999999999999999998887766655433
No 45
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.49 E-value=3.3e-14 Score=126.10 Aligned_cols=92 Identities=14% Similarity=0.294 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhhcCCC
Q 008250 211 YCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLP 290 (572)
Q Consensus 211 Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~~~lp 290 (572)
|..|+||++.|+|||||||++|.|..|++++++++++|++++++++|.+++.+.....+..+.+...+..+...+..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 77899999999999999999999999999999999999999999999999988655443332222222222233445566
Q ss_pred hhHHHHHHHHHH
Q 008250 291 PDLRERVRRYDQ 302 (572)
Q Consensus 291 ~~L~~rv~~y~~ 302 (572)
++....++++.+
T Consensus 124 ~~~i~~l~~~l~ 135 (137)
T 4h33_A 124 KEEIAVVEQFLT 135 (137)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 666666666554
No 46
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=144.87 Aligned_cols=128 Identities=20% Similarity=0.296 Sum_probs=110.7
Q ss_pred HHHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecC--CceeeeeeeeeCCC
Q 008250 331 HLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDG--GRSGFFNRGFLKEG 408 (572)
Q Consensus 331 ~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~--g~~~~~~~~~l~~G 408 (572)
.++..++++++.|..+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+. +++.+ +..+++|
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~--v~~l~~G 321 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVE--VGRLGPS 321 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCE--EEEECTT
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEE--EEEeCCC
Confidence 4556788999999999999999999999999999999999999999999999999999987542 33444 7899999
Q ss_pred CeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHH
Q 008250 409 DFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHT 469 (572)
Q Consensus 409 d~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~ 469 (572)
++||+.+++ ... +++++++|+++|+++.|++++|.+++..+|++..+.+++.
T Consensus 322 d~fGe~all---~~~------~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~ 373 (381)
T 4din_B 322 DYFGEIALL---LNR------PRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRY 373 (381)
T ss_dssp CEECTTGGG---SCC------BCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHH
T ss_pred CEechHHHh---CCC------CceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999974 222 3779999999999999999999999999998766555443
No 47
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.47 E-value=6.7e-13 Score=129.76 Aligned_cols=115 Identities=15% Similarity=0.173 Sum_probs=97.4
Q ss_pred HHHHHHHHhccE---EEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeeeCCCCeechhhhhhhcCCC
Q 008250 348 ERLLDAICERLK---PCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEELLTWALDPK 423 (572)
Q Consensus 348 ~~~l~~l~~~l~---~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~ 423 (572)
+++++.|..... .+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +.++++|++||+.+++. ..|.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~--l~~~~~g~~~G~~~~~~-~~~~ 106 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEIT--VALLRENSVFGVLSLLT-GNKS 106 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEE--EEEECTTCEESCHHHHS-SCCS
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEcchHHhC-CCCC
Confidence 677888888887 999999999999999999999999999999864 4688877 88999999999988742 1221
Q ss_pred CCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 008250 424 SGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTFR 471 (572)
Q Consensus 424 ~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r 471 (572)
++..+++|+++|+++.|++++|.+++.++|++...+++...+
T Consensus 107 ------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 148 (243)
T 3la7_A 107 ------DRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSS 148 (243)
T ss_dssp ------BCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------cceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 134789999999999999999999999999988777665544
No 48
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.47 E-value=2.6e-13 Score=142.01 Aligned_cols=126 Identities=13% Similarity=0.231 Sum_probs=109.6
Q ss_pred HHHHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCC
Q 008250 330 RHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGD 409 (572)
Q Consensus 330 ~~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd 409 (572)
.....+.++++++|.+++++.+..|+..++.+.|++|++|+++||+++.+|||.+|.|+++. +|+. +..+.+|+
T Consensus 125 ~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~~----v~~l~~G~ 198 (381)
T 4din_B 125 MTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGEW----VTNISEGG 198 (381)
T ss_dssp HHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTEE----EEEEESSC
T ss_pred HHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCeE----eeeCCCCC
Confidence 44567899999999999999999999999999999999999999999999999999999986 3442 67899999
Q ss_pred eechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHH
Q 008250 410 FCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTF 470 (572)
Q Consensus 410 ~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~ 470 (572)
+||+.+++. .. ++.++++|.++|+++.|++++|.+++.++|.+..+.+....
T Consensus 199 ~fGe~all~---~~------~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L 250 (381)
T 4din_B 199 SFGELALIY---GT------PRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFL 250 (381)
T ss_dssp CBCGGGGTS---CC------BCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEchHHhc---CC------CcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHh
Confidence 999998742 22 37799999999999999999999999999987665554433
No 49
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.44 E-value=2.1e-12 Score=125.79 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=97.6
Q ss_pred ccCCHHHHHHHHh--ccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeeeeCCCCeechhhhhhhc
Q 008250 344 ENMDERLLDAICE--RLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEELLTWAL 420 (572)
Q Consensus 344 ~~l~~~~l~~l~~--~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~~ 420 (572)
++++++.++.+.. .++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++ +|++||+..++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~-~G~~~Ge~~~~--- 75 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMN--LQYY-KGAFVIMSGFI--- 75 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEE--EEEE-ESSEEEESBCT---
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEE--EEEc-CCCEecchhhh---
Confidence 3578888888874 699999999999999999999999999999999864 4688877 7788 99999999874
Q ss_pred CCCCCCCCCC-cccEEEEe-ccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008250 421 DPKSGVNLPS-STRTVRAL-KEVEAFALMAEELKFVASQFRRLHSRQVQHTFRFY 473 (572)
Q Consensus 421 ~~~~~~~l~~-s~~tv~Al-t~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~r~~ 473 (572)
...+ + +..++.|+ ++|+++.|++++|.+++.++|++....++...+..
T Consensus 76 ~~~~-----~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 125 (238)
T 2bgc_A 76 DTET-----SVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQV 125 (238)
T ss_dssp TTCC-----BSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cCCC-----cCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 2211 1 24678888 59999999999999999999998887776655433
No 50
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.44 E-value=2.8e-13 Score=143.32 Aligned_cols=122 Identities=13% Similarity=0.259 Sum_probs=104.1
Q ss_pred HHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecC-------CceeeeeeeeeC
Q 008250 334 LALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDG-------GRSGFFNRGFLK 406 (572)
Q Consensus 334 ~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~-------g~~~~~~~~~l~ 406 (572)
..++++++.|..++++.+..++..++.+.|.+|++|+++|++++.+|||.+|.|+++..+. |++.+ +..++
T Consensus 266 ~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~--l~~l~ 343 (416)
T 3tnp_B 266 ESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVE--IARCF 343 (416)
T ss_dssp SSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CE--EEEEC
T ss_pred HHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeE--EEEeC
Confidence 3467888999999999999999999999999999999999999999999999999986543 66666 78999
Q ss_pred CCCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHH
Q 008250 407 EGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQV 466 (572)
Q Consensus 407 ~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l 466 (572)
+|++||+.+++ ... +++++++|+++|+++.|++++|.+++..+|++..+.+
T Consensus 344 ~G~~fGE~all---~~~------~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~ 394 (416)
T 3tnp_B 344 RGQYFGELALV---TNK------PRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNI 394 (416)
T ss_dssp TTCEESGGGGT---CCS------CCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC-
T ss_pred CCCEecHHHHh---CCC------CceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHH
Confidence 99999999974 222 3789999999999999999999999999998755433
No 51
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.44 E-value=5.2e-13 Score=115.97 Aligned_cols=59 Identities=17% Similarity=0.359 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008250 210 KYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTI 268 (572)
Q Consensus 210 ~Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~ 268 (572)
.|..|+||++.|+||+||||++|.+..+++++++.+++|++++++.+|.+++.+.+...
T Consensus 61 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999875443
No 52
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.42 E-value=7.8e-13 Score=142.06 Aligned_cols=136 Identities=16% Similarity=0.173 Sum_probs=118.4
Q ss_pred cCChhHHHHHHHHHHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEec-CCc-
Q 008250 319 SLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGR- 396 (572)
Q Consensus 319 ~Lp~~Lr~~i~~~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~g~- 396 (572)
..|+..|.+-......+.++++++|.+++++.++.|+..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|+
T Consensus 26 ~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~ 105 (469)
T 1o7f_A 26 DKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQ 105 (469)
T ss_dssp TSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGG
T ss_pred cCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCC
Confidence 357777877778888899999999999999999999999999999999999999999999999999999998754 454
Q ss_pred -eeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHH
Q 008250 397 -SGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHSRQV 466 (572)
Q Consensus 397 -~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l 466 (572)
+.+ +.++++|++||+.+ +. .. +++++++|.++|+++.|++++|.+++.++|.+...++
T Consensus 106 ~~~~--~~~~~~G~~fGe~~-l~-~~--------~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~ 164 (469)
T 1o7f_A 106 DAVT--ICTLGIGTAFGESI-LD-NT--------PRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLL 164 (469)
T ss_dssp GCEE--EEEECTTCEECGGG-GG-TC--------BCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTS
T ss_pred cceE--EEEccCCCCcchhh-hC-CC--------CccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHH
Confidence 355 78999999999987 42 22 2679999999999999999999999999998655443
No 53
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.40 E-value=8.7e-13 Score=141.71 Aligned_cols=122 Identities=12% Similarity=0.163 Sum_probs=103.2
Q ss_pred HHHHHHHhhcCcCCccCCHHHHHHHHhccEE-EEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCC
Q 008250 330 RHLCLALVRRVPLFENMDERLLDAICERLKP-CLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEG 408 (572)
Q Consensus 330 ~~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~-~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~G 408 (572)
.....+.++++++|.+++++.++.++..+.. +.|++|++|+++||+++.+|||.+|.|+++..++ .+ +..+.+|
T Consensus 332 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~---~~--~~~l~~G 406 (469)
T 1o7f_A 332 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK---GV--VCTLHEG 406 (469)
T ss_dssp HHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT---EE--EEEEETT
T ss_pred HHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCC---ee--EEEecCC
Confidence 3445678999999999999999999999985 5999999999999999999999999999987432 23 7899999
Q ss_pred CeechhhhhhhcCCCCCCCCCCcccEEEEec-cceeeeeCHHHHHHHHHHhHHHHHHH
Q 008250 409 DFCGEELLTWALDPKSGVNLPSSTRTVRALK-EVEAFALMAEELKFVASQFRRLHSRQ 465 (572)
Q Consensus 409 d~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt-~~~l~~l~~~~~~~l~~~~p~l~~~~ 465 (572)
++||+.+++ ... +++++++|++ +|+++.|++++|.+++.++|++..++
T Consensus 407 ~~fGe~~ll---~~~------~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l 455 (469)
T 1o7f_A 407 DDFGKLALV---NDA------PRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRL 455 (469)
T ss_dssp CEECGGGGT---CCS------CCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC----
T ss_pred CEEEEehhh---cCC------CceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHH
Confidence 999999873 222 2789999999 79999999999999999999765543
No 54
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.33 E-value=9.2e-12 Score=110.86 Aligned_cols=59 Identities=19% Similarity=0.411 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008250 210 KYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTI 268 (572)
Q Consensus 210 ~Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~ 268 (572)
.|..|+||++.|+||+||||++|.+..+++++++.+++|+++++++++.+++.+.....
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~ 98 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999988865443
No 55
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.30 E-value=1.3e-11 Score=144.76 Aligned_cols=135 Identities=17% Similarity=0.191 Sum_probs=109.8
Q ss_pred hhhcCChhHHHHHHHHHHHHHhhcCcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecC-
Q 008250 316 LVQSLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDG- 394 (572)
Q Consensus 316 ll~~Lp~~Lr~~i~~~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~- 394 (572)
.|+.-| .-|.+=...+....++.+++|+++++.++.+||..+..+.+.+|++|+++||+++++|+|++|.|.++..+.
T Consensus 24 ~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~ 102 (999)
T 4f7z_A 24 CLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS 102 (999)
T ss_dssp HHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSS
T ss_pred HhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCC
Confidence 344433 334333334556778999999999999999999999999999999999999999999999999999987532
Q ss_pred --CceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHHHHHHHHHhHHHHH
Q 008250 395 --GRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEELKFVASQFRRLHS 463 (572)
Q Consensus 395 --g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~ 463 (572)
+.+.. +..+.+|+.||| +++. .. +|+++++|.++|++++|++++|..+..++|+...
T Consensus 103 ~~~~~~~--v~~l~~G~sFGE-all~---n~------pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~ 161 (999)
T 4f7z_A 103 SHQDAVT--ICTLGIGTAFGE-SILD---NT------PRHATIVTRESSELLRIEQEDFKALWEKYRQYMA 161 (999)
T ss_dssp CTTSCEE--EEEEETTCEECG-GGGG---TC------CCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred CCCCcee--EEEecCCcchhh-hhcc---CC------CcceEEEeccceEEEEEEHHHHHHHHHhChHHHH
Confidence 33444 689999999999 5432 11 3789999999999999999999999999987543
No 56
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.29 E-value=7.1e-12 Score=140.28 Aligned_cols=132 Identities=13% Similarity=0.186 Sum_probs=110.4
Q ss_pred hhhhcCChhHHHHHHHHHHHHHhhcCcCCccCCHHHHHHHHhccE-EEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEec
Q 008250 315 NLVQSLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLK-PCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD 393 (572)
Q Consensus 315 ~ll~~Lp~~Lr~~i~~~~~~~ll~~v~~F~~l~~~~l~~l~~~l~-~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~ 393 (572)
.++.. |+..|.+.......+.++++++|.+++++.++.++..+. .+.|++|++|+++||+++.+|||.+|.|+++..
T Consensus 13 ~iL~k-~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~- 90 (694)
T 3cf6_E 13 MILRK-PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY- 90 (694)
T ss_dssp HHHHS-CGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET-
T ss_pred HHHcC-ChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe-
Confidence 44543 344455444555678899999999999999999999998 789999999999999999999999999999875
Q ss_pred CCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEec-cceeeeeCHHHHHHHHHHhHHH
Q 008250 394 GGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALK-EVEAFALMAEELKFVASQFRRL 461 (572)
Q Consensus 394 ~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt-~~~l~~l~~~~~~~l~~~~p~l 461 (572)
|+ .+ +.++.+|++||+.+++ ... ++.++++|++ +|+++.|++++|.++++++|.+
T Consensus 91 -g~-~i--l~~l~~Gd~fGe~al~-~~~--------~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 91 -GK-GV--VCTLHEGDDFGKLALV-NDA--------PRAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp -TT-EE--EEEEETTCEECHHHHH-HTC--------BCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred -CC-EE--EEEeCCCCEeehHHHh-CCC--------CceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 33 34 7899999999998874 222 2679999999 5999999999999999988875
No 57
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.28 E-value=2e-11 Score=114.96 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=77.4
Q ss_pred EEeCCCcEEEccCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEec
Q 008250 361 CLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALK 439 (572)
Q Consensus 361 ~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt 439 (572)
+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +.++.+|++||+ +++ ... ++..+++|++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~Ge-~~~---~~~------~~~~~~~A~~ 69 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLIT--LRHVLPGDYFGE-EAL---EGK------AYRYTAEAMT 69 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECG-GGG---TCS------BCSSEEEESS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEech-hhh---CCC------CceeEEEECC
Confidence 579999999999999999999999999998654 688877 889999999999 763 222 2678999999
Q ss_pred cceeeeeCHHHHHHHHHHhHHHHHHHHHHHH
Q 008250 440 EVEAFALMAEELKFVASQFRRLHSRQVQHTF 470 (572)
Q Consensus 440 ~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~ 470 (572)
+|+++.|++++|. |++...+++...
T Consensus 70 ~~~v~~i~~~~~~------p~~~~~~~~~l~ 94 (195)
T 3b02_A 70 EAVVQGLEPRAMD------HEALHRVARNLA 94 (195)
T ss_dssp SEEEEEECGGGCC------HHHHHHHHHHHH
T ss_pred cEEEEEEcHHHcC------HHHHHHHHHHHH
Confidence 9999999999998 776665554443
No 58
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.19 E-value=1.2e-10 Score=99.62 Aligned_cols=58 Identities=22% Similarity=0.265 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008250 211 YCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTI 268 (572)
Q Consensus 211 Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~ 268 (572)
|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++.++.+++.++....
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 107 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 107 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999988854433
No 59
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.18 E-value=7e-11 Score=111.72 Aligned_cols=97 Identities=19% Similarity=0.204 Sum_probs=77.4
Q ss_pred HhccEEEEeCCCcEEEccCCCC--CeEEEEEeeEEEEEEe-cCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCc
Q 008250 355 CERLKPCLFTDSTYIVREGDPV--DEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSS 431 (572)
Q Consensus 355 ~~~l~~~~~~~ge~I~~~Gd~~--~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s 431 (572)
...++.+.|++|++|+++|+++ +.+|||.+|.|+++.. .+|++.+ +.++.+|++||+ +++. .. ++
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~-~~l~-~~--------~~ 69 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALT--LRLVRPGGFFGE-EALF-GQ--------ER 69 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEE--EEEECTTCEECT-HHHH-TC--------CB
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCCEeee-hhcC-CC--------Cc
Confidence 4567889999999999999999 9999999999999865 4688877 889999999999 6532 22 26
Q ss_pred ccEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHH
Q 008250 432 TRTVRALKEVEAFALMAEELKFVASQFRRLHSRQVQHTF 470 (572)
Q Consensus 432 ~~tv~Alt~~~l~~l~~~~~~~l~~~~p~l~~~~l~~~~ 470 (572)
..+++|+++|+++.| +++|. |++....++...
T Consensus 70 ~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~l~ 101 (202)
T 2zcw_A 70 IYFAEAATDVRLEPL-PENPD------PELLKDLAQHLS 101 (202)
T ss_dssp CSEEEESSCEEEEEC-CSSCC------HHHHHHHHHHHH
T ss_pred ceEEEEcccEEEEEE-hHhcC------HHHHHHHHHHHH
Confidence 789999999999999 98886 766655554433
No 60
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.15 E-value=1.7e-10 Score=135.30 Aligned_cols=114 Identities=12% Similarity=0.156 Sum_probs=98.2
Q ss_pred HHHHHHhhcCcCCccCCHHHHHHHHhccEEEE-eCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCC
Q 008250 331 HLCLALVRRVPLFENMDERLLDAICERLKPCL-FTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGD 409 (572)
Q Consensus 331 ~~~~~ll~~v~~F~~l~~~~l~~l~~~l~~~~-~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd 409 (572)
....+.+.+++.|.+++...++.|+..+.... +++|++|+++||.++.+|||.+|.|+++...++. +..+++||
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~-----v~~L~~Gd 407 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGV-----VCTLHEGD 407 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEE-----EEEEETTC
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcc-----eEEecCCC
Confidence 44567889999999999999999999999765 5779999999999999999999999998644332 68899999
Q ss_pred eechhhhhhhcCCCCCCCCCCcccEEEEecc-ceeeeeCHHHHHHHHHHh
Q 008250 410 FCGEELLTWALDPKSGVNLPSSTRTVRALKE-VEAFALMAEELKFVASQF 458 (572)
Q Consensus 410 ~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~-~~l~~l~~~~~~~l~~~~ 458 (572)
+|||.+++ ... ++.+||+|.++ |+++++++++|.+++.+.
T Consensus 408 ~FGElALL---~~~------PR~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 408 DFGKLALV---NDA------PRAASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp EECGGGGT---CSC------BCSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred cccchhhc---cCC------CeeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence 99999973 333 37899999985 999999999999999764
No 61
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.14 E-value=1.5e-11 Score=103.44 Aligned_cols=58 Identities=19% Similarity=0.348 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008250 210 KYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLT 267 (572)
Q Consensus 210 ~Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~ 267 (572)
.|..|+||++.|+||+||||++|.+..+++++++.+++|+++++++++.+.+.+.+..
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 97 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRRE 97 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677999999999999999999999999999999999999999999999998886543
No 62
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.13 E-value=3.4e-10 Score=93.85 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008250 211 YCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQS 265 (572)
Q Consensus 211 Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~ 265 (572)
|..|+||++.|+||+||||+.|.+..+++++++.+++|+.+++++++.++..++.
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6779999999999999999999999999999999999999999999999988754
No 63
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.04 E-value=1.4e-09 Score=87.23 Aligned_cols=53 Identities=23% Similarity=0.530 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008250 211 YCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYL 263 (572)
Q Consensus 211 Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l 263 (572)
|..|+||++.|+||+||||+.|.+..+++++++.+++|+.++++.++.+++.+
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67799999999999999999999999999999999999999999999998765
No 64
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.94 E-value=4.2e-11 Score=109.82 Aligned_cols=63 Identities=17% Similarity=0.387 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 008250 209 SKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLE 271 (572)
Q Consensus 209 ~~Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~ 271 (572)
..|..|+||++.|+|||||||++|.+..+++++++.+++|++++++++|.+++.+.....+..
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~ 128 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQ 128 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHH
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347789999999999999999999999999999999999999999999999998876554433
No 65
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.81 E-value=1.5e-08 Score=101.44 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhhhccccc-ccc-cCCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008250 208 FSKYCYCLWWGLQNLSTLGQG-LQT-STFPGE----VIFSIALAIFGLILFALLIGNMQTYLQSLTI 268 (572)
Q Consensus 208 ~~~Y~~slywa~~tlttvGyg-di~-~~~~~E----~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~ 268 (572)
+..+..|+||+++++||+||| |+. |.+... ..|++++++.|.++.+..+|.+.+.++....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999 985 665433 7899999999999999999999887765433
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.79 E-value=1.3e-08 Score=101.93 Aligned_cols=55 Identities=15% Similarity=0.245 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008250 210 KYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQ 264 (572)
Q Consensus 210 ~Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~ 264 (572)
.|..++||++.|+||+||||++|.+...++++++.+++|++++|+++|.+.+.+.
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999998877663
No 67
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.75 E-value=2.6e-08 Score=99.32 Aligned_cols=56 Identities=21% Similarity=0.352 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008250 210 KYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQS 265 (572)
Q Consensus 210 ~Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~ 265 (572)
.|..|+||+++|+||+||||++|.|...++|+++.+++|+.+++++++.+++.+..
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999988864
No 68
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.73 E-value=8.9e-09 Score=104.19 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008250 211 YCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSL 266 (572)
Q Consensus 211 Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~ 266 (572)
|..++||++.|+||+||||++|.+..+++++++.+++|++++++++|.+.+.+...
T Consensus 97 ~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp THHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999998887543
No 69
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.57 E-value=1.8e-07 Score=94.40 Aligned_cols=56 Identities=20% Similarity=0.437 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhhcccccccccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008250 211 YCYCLWWGLQNLSTLGQGLQTST--FPGEVIFSIALAIFGLILFALLIGNMQTYLQSL 266 (572)
Q Consensus 211 Y~~slywa~~tlttvGygdi~~~--~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~ 266 (572)
+..++||++.|+||+||||+.|. +...++++++.+++|+++.|+.+|.+.+-+..-
T Consensus 92 f~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp 149 (340)
T 3sya_A 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQP 149 (340)
T ss_dssp TTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45699999999999999999987 678899999999999999999999887776543
No 70
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.55 E-value=9e-08 Score=96.50 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008250 210 KYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQS 265 (572)
Q Consensus 210 ~Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~ 265 (572)
.|..|+||++.|+|||||||+.|.+...++++++.+++|++++|+++|.+.+.+..
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~ 133 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQ 133 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999987754
No 71
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.48 E-value=5.1e-07 Score=99.08 Aligned_cols=53 Identities=17% Similarity=0.410 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 008250 211 YCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGN-MQTYL 263 (572)
Q Consensus 211 Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~-~~~~l 263 (572)
|+.|+||++.|+||+||||++|.+..+++++++++++|++++++.++. +.+.+
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577999999999999999999999999999999999999999999987 55544
No 72
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.45 E-value=2.5e-07 Score=92.22 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhhcccccccccCCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008250 211 YCYCLWWGLQNLSTLGQGLQTSTFPGEV------IFSIALAIFGLILFALLIGNMQTYLQSLT 267 (572)
Q Consensus 211 Y~~slywa~~tlttvGygdi~~~~~~E~------~~~i~~~i~G~~~fa~lig~~~~~l~~~~ 267 (572)
|+.|+||++.|+|||||||+.|.+..++ +++++++++|+.+++++++.+++.+....
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~ 287 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVS 287 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999998886 59999999999999999999888876544
No 73
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.40 E-value=4.5e-07 Score=89.03 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008250 210 KYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQ 264 (572)
Q Consensus 210 ~Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~ 264 (572)
.|..|+||+++|+||+||||++|.|...++|+++.+++|+.+++++++.+...+.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999999886553
No 74
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.38 E-value=1.2e-06 Score=86.09 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhhcccccccccCCch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008250 211 YCYCLWWGLQNLSTLGQGLQTSTFPG-------EVIFSIALAIFGLILFALLIGNMQTYLQSL 266 (572)
Q Consensus 211 Y~~slywa~~tlttvGygdi~~~~~~-------E~~~~i~~~i~G~~~fa~lig~~~~~l~~~ 266 (572)
|+.|+||++.|+|||||||+.|.+.. -++++++++++|+.+++++++.+.++++..
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~ 264 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELK 264 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999875 499999999999999999999999887543
No 75
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.30 E-value=2.1e-06 Score=86.66 Aligned_cols=56 Identities=20% Similarity=0.441 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhhcccccccccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008250 210 KYCYCLWWGLQNLSTLGQGLQTST--FPGEVIFSIALAIFGLILFALLIGNMQTYLQS 265 (572)
Q Consensus 210 ~Y~~slywa~~tlttvGygdi~~~--~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~ 265 (572)
.+..++||++.|+||+||||+.|. +...++++.+.+++|+++.|+.+|.+.+-+..
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367799999999999999999864 78899999999999999999999988776644
No 76
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.12 E-value=2e-07 Score=95.42 Aligned_cols=55 Identities=22% Similarity=0.541 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008250 211 YCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQS 265 (572)
Q Consensus 211 Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~ 265 (572)
|..|+||++.|+||+||||++|.+..+++++++++++|+++++++++.+.+.+..
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLIN 100 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC--
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999999999999888754
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.25 E-value=0.0016 Score=62.31 Aligned_cols=54 Identities=15% Similarity=0.041 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhhcccccccc----cCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008250 210 KYCYCLWWGLQNLSTLGQGLQT----STFPG-EVIFSIALAIFGLILFALLIGNMQTYL 263 (572)
Q Consensus 210 ~Y~~slywa~~tlttvGygdi~----~~~~~-E~~~~i~~~i~G~~~fa~lig~~~~~l 263 (572)
....|+||.++++|+.|++|+. ..+.. =..|..++.+.+.++....+|.+.+-.
T Consensus 165 ~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f 223 (229)
T 4dxw_A 165 DLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVV 223 (229)
T ss_dssp SHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999999862 11112 223334444444555555555554443
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=93.01 E-value=0.084 Score=46.50 Aligned_cols=20 Identities=15% Similarity=0.446 Sum_probs=16.5
Q ss_pred HHhhhhhHHHHHHhhcchhHH
Q 008250 31 KRYMRRYFIIDFLAVLPLPQI 51 (572)
Q Consensus 31 ~~Ylk~~F~~Dlis~lP~~~i 51 (572)
++|+++ -|+|++|++|+...
T Consensus 80 ~~f~~~-~iiDllailP~~~~ 99 (147)
T 2kyh_A 80 AGYVKK-TLYEIPALVPAGLL 99 (147)
T ss_dssp HHHHHH-STTTHHHHCCHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHH
Confidence 578887 68999999999644
No 79
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=91.77 E-value=0.14 Score=44.17 Aligned_cols=20 Identities=15% Similarity=0.366 Sum_probs=17.0
Q ss_pred HHhhhhhHHHHHHhhcchhHH
Q 008250 31 KRYMRRYFIIDFLAVLPLPQI 51 (572)
Q Consensus 31 ~~Ylk~~F~~Dlis~lP~~~i 51 (572)
++|++ |-++|+++++|+...
T Consensus 65 ~~y~~-~niiDllailp~~~~ 84 (132)
T 1ors_C 65 AGYVK-KTLYEIPALVPAGLL 84 (132)
T ss_dssp TTTTT-TCGGGTGGGSCHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHH
Confidence 57888 899999999998643
No 80
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=79.53 E-value=6.6 Score=32.20 Aligned_cols=67 Identities=12% Similarity=0.146 Sum_probs=47.9
Q ss_pred cEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 008250 358 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRA 437 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~A 437 (572)
+....++||..+-..--+..++++|++|.+++.. +|+ ...+.+||.+--.. . ....+++
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ip~-------~-------~~H~~~~ 96 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV--DGA-----QRRLHQGDLLYLGA-------G-------AAHDVNA 96 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE--TTE-----EEEECTTEEEEECT-------T-------CCEEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE--CCE-----EEEECCCCEEEECC-------C-------CcEEEEe
Confidence 4556788998887666667899999999998865 333 35789999874322 1 2467888
Q ss_pred eccceeee
Q 008250 438 LKEVEAFA 445 (572)
Q Consensus 438 lt~~~l~~ 445 (572)
.++++++.
T Consensus 97 ~~~~~~~~ 104 (114)
T 3fjs_A 97 ITNTSLLV 104 (114)
T ss_dssp SSSEEEEE
T ss_pred CCCcEEEE
Confidence 88877554
No 81
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=77.38 E-value=7.6 Score=31.50 Aligned_cols=67 Identities=12% Similarity=0.099 Sum_probs=43.9
Q ss_pred EEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEe
Q 008250 359 KPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRAL 438 (572)
Q Consensus 359 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Al 438 (572)
....+.+|..+-....+..++++|++|.+++.. +|+ ...+.+||.+=-. +. ....+.+.
T Consensus 41 ~~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i--~~~-----~~~l~~Gd~i~i~-------~~-------~~H~~~~~ 99 (114)
T 2ozj_A 41 SLFSFADGESVSEEEYFGDTLYLILQGEAVITF--DDQ-----KIDLVPEDVLMVP-------AH-------KIHAIAGK 99 (114)
T ss_dssp EEEEEETTSSCCCBCCSSCEEEEEEEEEEEEEE--TTE-----EEEECTTCEEEEC-------TT-------CCBEEEEE
T ss_pred EEEEECCCCccccEECCCCeEEEEEeCEEEEEE--CCE-----EEEecCCCEEEEC-------CC-------CcEEEEeC
Confidence 334466777665455567899999999998765 333 3578999976422 21 23556666
Q ss_pred ccceeeee
Q 008250 439 KEVEAFAL 446 (572)
Q Consensus 439 t~~~l~~l 446 (572)
+++.++.+
T Consensus 100 ~~~~~~~i 107 (114)
T 2ozj_A 100 GRFKMLQI 107 (114)
T ss_dssp EEEEEEEE
T ss_pred CCcEEEEE
Confidence 77776654
No 82
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=76.76 E-value=8.1 Score=36.08 Aligned_cols=69 Identities=12% Similarity=0.176 Sum_probs=53.8
Q ss_pred ccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEE
Q 008250 357 RLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVR 436 (572)
Q Consensus 357 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~ 436 (572)
.+....+.||+.+-..--+.+++.+|++|.+++... |+ ...+.+||++=- .+. ....+.
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~~~~-------p~~-------~~H~~~ 96 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE--NN-----KKTISNGDFLEI-------TAN-------HNYSIE 96 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES--SC-----EEEEETTEEEEE-------CSS-------CCEEEE
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC--CE-----EEEECCCCEEEE-------CCC-------CCEEEE
Confidence 345678999999988888899999999999998763 33 357899998632 221 357899
Q ss_pred Eeccceeeee
Q 008250 437 ALKEVEAFAL 446 (572)
Q Consensus 437 Alt~~~l~~l 446 (572)
|.+++.++.+
T Consensus 97 a~~~~~~l~i 106 (227)
T 3rns_A 97 ARDNLKLIEI 106 (227)
T ss_dssp ESSSEEEEEE
T ss_pred ECCCcEEEEE
Confidence 9999999877
No 83
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=72.24 E-value=19 Score=29.04 Aligned_cols=68 Identities=10% Similarity=0.055 Sum_probs=45.9
Q ss_pred cEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 008250 358 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRA 437 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~A 437 (572)
+....+.||..+-..--...++++|++|.+++.. +|+ ...+.+||.+-- .+. ....+.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~i-------p~~-------~~H~~~~ 94 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGV-----IKVLTAGDSFFV-------PPH-------VDHGAVC 94 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTCEEEE-------CTT-------CCEEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCE-----EEEeCCCCEEEE-------CcC-------CceeeEe
Confidence 4456778887754333446799999999998765 333 357899998632 221 2356777
Q ss_pred eccceeeee
Q 008250 438 LKEVEAFAL 446 (572)
Q Consensus 438 lt~~~l~~l 446 (572)
.++++++.+
T Consensus 95 ~~~~~~l~v 103 (116)
T 2pfw_A 95 PTGGILIDT 103 (116)
T ss_dssp SSCEEEEEE
T ss_pred CCCcEEEEE
Confidence 778877766
No 84
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=71.33 E-value=12 Score=31.08 Aligned_cols=46 Identities=17% Similarity=0.280 Sum_probs=34.7
Q ss_pred EEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 359 KPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 359 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
....+.||..+-..- ..+++++|++|.+++.. +|+ ...+++||.+-
T Consensus 43 ~~~~~~pG~~~~~H~-~~~E~~~Vl~G~~~~~~--~g~-----~~~l~~GD~v~ 88 (119)
T 3lwc_A 43 GYGRYAPGQSLTETM-AVDDVMIVLEGRLSVST--DGE-----TVTAGPGEIVY 88 (119)
T ss_dssp EEEEECTTCEEEEEC-SSEEEEEEEEEEEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEEECCCCCcCccC-CCCEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 345678887665543 78899999999999876 444 35789999874
No 85
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=71.07 E-value=15 Score=29.56 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=45.4
Q ss_pred cEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 008250 358 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRA 437 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~A 437 (572)
+....+.||..+-..--...++++|++|.+.+.. +|+ ...+.+||++-- .+. ....+.+
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~i-------p~~-------~~H~~~~ 100 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI--DQE-----TYRVAEGQTIVM-------PAG-------IPHALYA 100 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEEE-------CTT-------SCEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE--CCE-----EEEECCCCEEEE-------CCC-------CCEEEEE
Confidence 4455778888765444456799999999998764 333 357899998742 221 2356777
Q ss_pred eccceeeee
Q 008250 438 LKEVEAFAL 446 (572)
Q Consensus 438 lt~~~l~~l 446 (572)
.++++++.+
T Consensus 101 ~~~~~~~~v 109 (115)
T 1yhf_A 101 VEAFQMLLV 109 (115)
T ss_dssp SSCEEEEEE
T ss_pred CCCceEEEE
Confidence 777776654
No 86
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=65.63 E-value=6 Score=44.41 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhhcccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhh
Q 008250 210 KYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHH 286 (572)
Q Consensus 210 ~Y~~slywa~~tlttvGygdi~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~~~~~~~~~~~~~m~~ 286 (572)
....++||++.+++..| ++..|.+...+++.++++++++++.+...+++++++.. ..+...++.+++...+
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~-----~~~~~~I~s~~dL~~~ 633 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV-----ERMVSPIESAEDLSKQ 633 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHCCCCCSSHHHHHC
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-----cccCCCCCCHHHHhhC
Confidence 45679999999998888 67889999999999999999999999999999999864 2233344555555543
No 87
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=64.62 E-value=21 Score=29.30 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=35.7
Q ss_pred cEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
+....+.||..+-..--...++++|++|.+++.. +|+ ...+.+||.+-
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 90 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI--GEE-----TRVLRPGMAYT 90 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE
Confidence 4566788888775555556899999999998865 333 35789999863
No 88
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=57.87 E-value=11 Score=23.36 Aligned_cols=21 Identities=29% Similarity=0.263 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 008250 477 WRTWAACFIQAAWRRYSKRKK 497 (572)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~r~~ 497 (572)
-+.+++..||.+|+++.-|..
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 367899999999999987643
No 89
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=56.73 E-value=11 Score=22.52 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008250 478 RTWAACFIQAAWRRYSKRK 496 (572)
Q Consensus 478 ~~~~~~~~~~~~~~~~~r~ 496 (572)
+.+++..||.+|+++..+.
T Consensus 5 Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5689999999999987653
No 90
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=55.79 E-value=15 Score=32.69 Aligned_cols=35 Identities=34% Similarity=0.477 Sum_probs=28.0
Q ss_pred CCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 375 PVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 375 ~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
+.++++++++|.+.+-..++|+.. ...+++||+|=
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~---~v~l~eGE~f~ 88 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRE---RADLKEGDIFL 88 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEE---EEEECTTCEEE
T ss_pred CCceEEEEEeeEEEEEEEcCCcee---eEEECCCCEEE
Confidence 678999999999998877766432 35799999984
No 91
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=55.15 E-value=30 Score=32.07 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=48.8
Q ss_pred cEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 008250 358 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRA 437 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~A 437 (572)
+....+.||+.+-..--+.+++++|++|.+++.. +|+ ...+.+||.+=-.. . ....+.+
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~g~-----~~~l~~Gd~i~ip~-------~-------~~H~~~~ 213 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV--DGK-----PFIVKKGESAVLPA-------N-------IPHAVEA 213 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE--TTE-----EEEEETTEEEEECT-------T-------SCEEEEC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE--CCE-----EEEECCCCEEEECC-------C-------CcEEEEe
Confidence 4567889999887655667799999999998765 333 35789999864322 1 2467788
Q ss_pred -eccceeeee
Q 008250 438 -LKEVEAFAL 446 (572)
Q Consensus 438 -lt~~~l~~l 446 (572)
.++++++.+
T Consensus 214 ~~~~~~~ll~ 223 (227)
T 3rns_A 214 ETENFKMLLI 223 (227)
T ss_dssp CSSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 888877653
No 92
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=54.15 E-value=22 Score=28.23 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=34.2
Q ss_pred cEEEEeCCCcEEEcc--CCC-CCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYIVRE--GDP-VDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I~~~--Gd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
+....+.||..+-.. --. ..++++|++|.+++.. +++ ...+.+||++-
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 73 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV--DGH-----TQALQAGSLIA 73 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE--TTE-----EEEECTTEEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 445578888876544 334 6799999999998765 233 35789999763
No 93
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=53.03 E-value=25 Score=27.20 Aligned_cols=48 Identities=10% Similarity=0.091 Sum_probs=33.1
Q ss_pred cEEEEeCCCcEEEccCCC-CCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYIVREGDP-VDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
+....+.||..+-..--. ..++++|++|.+++.. +|+ ...+.+||++-
T Consensus 30 ~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~--~~~-----~~~l~~Gd~~~ 78 (105)
T 1v70_A 30 YDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV--GEE-----EALLAPGMAAF 78 (105)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 345577888876443333 3579999999998765 233 35789999863
No 94
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=51.11 E-value=26 Score=29.93 Aligned_cols=63 Identities=11% Similarity=0.095 Sum_probs=41.1
Q ss_pred ccCCCCCeEEEEEeeEEEEEEecCC---ceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeC
Q 008250 371 REGDPVDEMLFIIRGRLESVTTDGG---RSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALM 447 (572)
Q Consensus 371 ~~Gd~~~~lyfI~~G~v~v~~~~~g---~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~ 447 (572)
+.-+..|++|+|++|.+++...+++ .+.- ...+.+|+++-- |+. -..+-.|-++|.++.+.
T Consensus 45 h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~--~V~l~~Ge~yvV--------PkG------veH~p~a~~e~~vLLiE 108 (140)
T 3d0j_A 45 EIHHSTDEQFILSAGKAILITAEKENDKFNIE--LTLMEKGKVYNV--------PAE------CWFYSITQKDTKMMYVQ 108 (140)
T ss_dssp EEESSCCEEEEEEESCEEEEEEEEETTEEEEE--EEECCTTCCEEE--------CTT------CEEEEEECTTCEEEEEE
T ss_pred ccCCCCCeEEEEEecEEEEEEecCcCCCCccc--eEEecCCCEEEe--------CCC------ccCcccCCCceEEEEEE
Confidence 3445679999999999998765321 1111 457899998743 222 23456677888887775
Q ss_pred HH
Q 008250 448 AE 449 (572)
Q Consensus 448 ~~ 449 (572)
..
T Consensus 109 p~ 110 (140)
T 3d0j_A 109 DS 110 (140)
T ss_dssp ES
T ss_pred eC
Confidence 44
No 95
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=51.00 E-value=50 Score=26.27 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=34.1
Q ss_pred cEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
+....+.||+.-.. -...++++|++|.+++.. ++|+ ...+.+||.+-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i-~~g~-----~~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTT-EDGK-----KYVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEE-TTCC-----EEEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEE-CCCC-----EEEECCCCEEE
Confidence 34567788876544 446899999999999865 3244 45789999874
No 96
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=50.61 E-value=41 Score=30.03 Aligned_cols=50 Identities=16% Similarity=0.148 Sum_probs=33.2
Q ss_pred EEEeCCCcEEE---ccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 360 PCLFTDSTYIV---REGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 360 ~~~~~~ge~I~---~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
...+.||...- ..-....++++|++|.+++...++|... ...+.+||.+-
T Consensus 121 ~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~---~~~l~~GD~~~ 173 (198)
T 2bnm_A 121 VVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK---EALLPTGASMF 173 (198)
T ss_dssp EEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE---EEEECTTCEEE
T ss_pred EEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc---cEEECCCCEEE
Confidence 44677876543 1223457999999999998764422211 46899999874
No 97
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=50.30 E-value=21 Score=31.80 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=36.6
Q ss_pred cEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
+....+.||......-..++++++|++|.+++...+.+... ...+++||.+-
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~---~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE---EEEECCCCEEE
Confidence 55668889987655433468999999999998654332222 45799999874
No 98
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=48.61 E-value=28 Score=28.42 Aligned_cols=49 Identities=20% Similarity=0.172 Sum_probs=33.9
Q ss_pred cEEEEeCCCcEEEccCCC-CCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYIVREGDP-VDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
+....+.||..+-..--. ..++++|++|.+++.. ++|+ ...+.+||++-
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~-~~~~-----~~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ-GNGI-----VTHLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC-STTC-----EEEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE-CCCe-----EEEeCCCCEEE
Confidence 455678888877554444 3689999999998754 2344 35789999763
No 99
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=46.45 E-value=31 Score=26.75 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=34.8
Q ss_pred CCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeC
Q 008250 376 VDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALM 447 (572)
Q Consensus 376 ~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~ 447 (572)
..++++|++|.+.+... |+ ...+.+||.+-- .+. ....+.+.+++.++.++
T Consensus 50 ~~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~~i-------p~~-------~~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFR--DQ-----NITLQAGEMYVI-------PKG-------VEHKPMAKEECKIMIIE 100 (102)
T ss_dssp CCEEEEEEESEEEEECS--SC-----EEEEETTEEEEE-------CTT-------CCBEEEEEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEEC--CE-----EEEEcCCCEEEE-------CCC-------CeEeeEcCCCCEEEEEE
Confidence 37999999999987642 33 357889997632 221 23556666788887765
No 100
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=46.08 E-value=79 Score=24.63 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=41.9
Q ss_pred EEEEeCCCcEEEccCCCC-CeE-EEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEE
Q 008250 359 KPCLFTDSTYIVREGDPV-DEM-LFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVR 436 (572)
Q Consensus 359 ~~~~~~~ge~I~~~Gd~~-~~l-yfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~ 436 (572)
....+.+|..+-..--.. .++ ++|++|.+++... +|+ ...+.+||.+--.. . ....+.
T Consensus 36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~-~~~-----~~~l~~Gd~~~ip~-------~-------~~H~~~ 95 (110)
T 2q30_A 36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGD-GDA-----VIPAPRGAVLVAPI-------S-------TPHGVR 95 (110)
T ss_dssp EEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECG-GGC-----EEEECTTEEEEEET-------T-------SCEEEE
T ss_pred EEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeC-CCE-----EEEECCCCEEEeCC-------C-------CcEEEE
Confidence 445678887765433332 466 8999999987652 133 35789999764322 1 235667
Q ss_pred Eeccceeeee
Q 008250 437 ALKEVEAFAL 446 (572)
Q Consensus 437 Alt~~~l~~l 446 (572)
+.++++++.+
T Consensus 96 ~~~~~~~l~~ 105 (110)
T 2q30_A 96 AVTDMKVLVT 105 (110)
T ss_dssp ESSSEEEEEE
T ss_pred EcCCcEEEEE
Confidence 7777665543
No 101
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=45.93 E-value=53 Score=31.54 Aligned_cols=65 Identities=8% Similarity=0.168 Sum_probs=44.3
Q ss_pred EEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeC
Q 008250 368 YIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALM 447 (572)
Q Consensus 368 ~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~ 447 (572)
..++ -+..+++|++++|.+.+-..++|+-. ...+++|++|-- |.. -.++=++-++|..++|.
T Consensus 44 ~d~H-~~~~dE~FyqlkG~m~l~~~d~g~~~---~V~i~eGemfll--------P~g------v~HsP~r~~et~gLviE 105 (286)
T 2qnk_A 44 KDYH-IEEGEEVFYQLEGDMVLRVLEQGKHR---DVVIRQGEIFLL--------PAR------VPHSPQRFANTVGLVVE 105 (286)
T ss_dssp CCEE-ECSSCEEEEEEESCEEEEEEETTEEE---EEEECTTEEEEE--------CTT------CCEEEEECTTCEEEEEE
T ss_pred ccCc-CCCCCeEEEEEeCeEEEEEEeCCcee---eEEECCCeEEEe--------CCC------CCcCCcccCCeEEEEEe
Confidence 4444 45678999999999998777766422 357899999842 221 13455667788888887
Q ss_pred HHH
Q 008250 448 AEE 450 (572)
Q Consensus 448 ~~~ 450 (572)
+..
T Consensus 106 ~~R 108 (286)
T 2qnk_A 106 RRR 108 (286)
T ss_dssp ECC
T ss_pred ecC
Confidence 543
No 102
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=45.79 E-value=14 Score=29.55 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=41.4
Q ss_pred EeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEeccc
Q 008250 362 LFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEV 441 (572)
Q Consensus 362 ~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~ 441 (572)
...+|+...+.-+...++++|++|.+++...+ |+ ...+.+||.+--. +. ....+.+.+++
T Consensus 34 ~~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~-~~-----~~~l~~Gd~~~ip-------~~-------~~H~~~~~~~~ 93 (107)
T 2i45_A 34 VKLLGDYGWHTHGYSDKVLFAVEGDMAVDFAD-GG-----SMTIREGEMAVVP-------KS-------VSHRPRSENGC 93 (107)
T ss_dssp EEEEEECCCBCC--CCEEEEESSSCEEEEETT-SC-----EEEECTTEEEEEC-------TT-------CCEEEEEEEEE
T ss_pred EECCCCCcceeCCCCCEEEEEEeCEEEEEECC-Cc-----EEEECCCCEEEEC-------CC-------CcEeeEeCCCe
Confidence 33455543333333489999999999876533 23 4678999987322 21 22455556778
Q ss_pred eeeeeCHHH
Q 008250 442 EAFALMAEE 450 (572)
Q Consensus 442 ~l~~l~~~~ 450 (572)
.++.+....
T Consensus 94 ~~l~i~~~~ 102 (107)
T 2i45_A 94 SLVLIELSD 102 (107)
T ss_dssp EEEEEECC-
T ss_pred EEEEEECCC
Confidence 888776544
No 103
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=45.77 E-value=20 Score=31.95 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=39.5
Q ss_pred CCCCeEEEEEeeEEEEEEecCC---ceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCHHH
Q 008250 374 DPVDEMLFIIRGRLESVTTDGG---RSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMAEE 450 (572)
Q Consensus 374 d~~~~lyfI~~G~v~v~~~~~g---~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~~~ 450 (572)
++.++++++++|.+.+-..++| .+. ....+++||+|=-- +. -..+-++-.++..+.+.++.
T Consensus 52 ~~~eE~Fy~lkG~m~l~v~d~g~~~~~~--~dv~i~eGdmfllP-------~g-------vpHsP~r~~e~v~lviErkR 115 (176)
T 1zvf_A 52 NPTPEWFYQKKGSMLLKVVDETDAEPKF--IDIIINEGDSYLLP-------GN-------VPHSPVRFADTVGIVVEQDR 115 (176)
T ss_dssp CSSCEEEEEEESCEEEEEEECSSSSCEE--EEEEECTTEEEEEC-------TT-------CCEEEEECTTCEEEEEEECC
T ss_pred CCCceEEEEEeCEEEEEEEcCCCcccce--eeEEECCCCEEEcC-------CC-------CCcCCcccCCcEEEEEEecC
Confidence 4567999999999998877755 111 13679999998432 21 12344455677777765543
No 104
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=43.27 E-value=33 Score=30.09 Aligned_cols=48 Identities=19% Similarity=0.163 Sum_probs=33.5
Q ss_pred cEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
+....+.||..+-..--...++++|++|.+++.. +|+ ...+.+||++-
T Consensus 58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 105 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL--DDR-----VEPLTPLDCVY 105 (167)
T ss_dssp EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 4455677777654333457899999999998764 233 45789999863
No 105
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=42.30 E-value=35 Score=29.21 Aligned_cols=52 Identities=10% Similarity=0.068 Sum_probs=36.5
Q ss_pred ccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeech
Q 008250 357 RLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGE 413 (572)
Q Consensus 357 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 413 (572)
.+....++||..+-...-+..+.++|++|..+. .+|.... -..+++||++-.
T Consensus 45 ~~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~---~~g~~~~--~~~~~~Gd~~~~ 96 (145)
T 2o1q_A 45 WTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV---RGGKAAG--GDTAIAPGYGYE 96 (145)
T ss_dssp EEEEEEECTTEEECCEEESSCEEEEEEEEEEEE---TTCGGGT--SEEEESSEEEEE
T ss_pred EEEEEEECCCCCCCccCCCCCEEEEEEEeEEEE---cCCCEec--ceEeCCCEEEEE
Confidence 356778999999877766778889999999873 2333210 146788888643
No 106
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=41.96 E-value=56 Score=29.53 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=35.9
Q ss_pred cEEEEeCCCcEEEccCCC-CCeEEEEEeeEEEEEEecCC---ceeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYIVREGDP-VDEMLFIIRGRLESVTTDGG---RSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~g---~~~~~~~~~l~~Gd~fG 412 (572)
+....+.||...-..--+ ..++++|++|.+++...+++ .+.. ...+.+||.+-
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~--~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY--SRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEE--EEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEE--EEEECCCCEEE
Confidence 456678888865433333 57999999999998664432 2222 35789999874
No 107
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=41.42 E-value=22 Score=29.71 Aligned_cols=47 Identities=21% Similarity=0.126 Sum_probs=32.2
Q ss_pred EEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeech
Q 008250 360 PCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGE 413 (572)
Q Consensus 360 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 413 (572)
.-...||..-.+..+ .+++++|++|.+++.. ++|+ ...+++||.+--
T Consensus 53 ~w~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~-~~g~-----~~~l~~GD~~~i 99 (123)
T 3bcw_A 53 VWESTSGSFQSNTTG-YIEYCHIIEGEARLVD-PDGT-----VHAVKAGDAFIM 99 (123)
T ss_dssp EEEEEEEEEECCCTT-EEEEEEEEEEEEEEEC-TTCC-----EEEEETTCEEEE
T ss_pred EEEECCCceeeEcCC-CcEEEEEEEEEEEEEE-CCCe-----EEEECCCCEEEE
Confidence 345566766554332 3899999999998764 3454 357899998753
No 108
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=40.72 E-value=58 Score=28.23 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=24.5
Q ss_pred CCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 375 PVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 375 ~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
..+++++|++|.+++.. +|+ ...+++||.+=
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~-----~~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGR-----KVSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEE--CCE-----EEEEcCCCEEE
Confidence 46799999999999875 454 45789999874
No 109
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=40.67 E-value=1.4e+02 Score=23.99 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=48.4
Q ss_pred EEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEe
Q 008250 359 KPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRAL 438 (572)
Q Consensus 359 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Al 438 (572)
....+.||...-..--...++++|++|.+++.. +|+ ...+.+||++--. +. ....+.+.
T Consensus 37 ~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i--~~~-----~~~l~~Gd~~~i~-------~~-------~~H~~~~~ 95 (128)
T 4i4a_A 37 AWCIVRPETKSFRHSHNEYELFIVIQGNAIIRI--NDE-----DFPVTKGDLIIIP-------LD-------SEHHVINN 95 (128)
T ss_dssp EEEEECTTEECCCBCCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEEEC-------TT-------CCEEEEEC
T ss_pred EEEEECCCCccCCEecCCeEEEEEEeCEEEEEE--CCE-----EEEECCCcEEEEC-------CC-------CcEEeEeC
Confidence 445667776543333456799999999998765 333 4578999986422 21 12344543
Q ss_pred --ccce--eeeeCHHHHHHHHHHhH
Q 008250 439 --KEVE--AFALMAEELKFVASQFR 459 (572)
Q Consensus 439 --t~~~--l~~l~~~~~~~l~~~~p 459 (572)
++++ ++.++.+-+..++.+.+
T Consensus 96 ~~~~~~~~~i~f~~~~~~~~~~~~~ 120 (128)
T 4i4a_A 96 NQEDFHFYTIWWDKESTLNFLTRLE 120 (128)
T ss_dssp SSSCEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEECHHHHHHHHHhcc
Confidence 3333 45667777766665543
No 110
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=40.35 E-value=86 Score=29.27 Aligned_cols=66 Identities=12% Similarity=0.180 Sum_probs=43.9
Q ss_pred EEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEe
Q 008250 359 KPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRAL 438 (572)
Q Consensus 359 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Al 438 (572)
-...++||...-..- .+++.+|++|.+++.. +|+ ...+.+||.+--.. . ....+++.
T Consensus 53 ~~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~~~~p~-------~-------~~H~~~n~ 109 (246)
T 1sfn_A 53 FTAEMPAGAQATESV--YQRFAFVLSGEVDVAV--GGE-----TRTLREYDYVYLPA-------G-------EKHMLTAK 109 (246)
T ss_dssp EEEEECTTCEEECCS--SEEEEEEEEEEEEEEC--SSC-----EEEECTTEEEEECT-------T-------CCCEEEEE
T ss_pred EEEEECCCCcCCCCc--eeEEEEEEECEEEEEE--CCE-----EEEECCCCEEEECC-------C-------CCEEEEeC
Confidence 355778887765443 7889999999998865 344 46799999874322 1 12445555
Q ss_pred ccceeeeeC
Q 008250 439 KEVEAFALM 447 (572)
Q Consensus 439 t~~~l~~l~ 447 (572)
++++++.+.
T Consensus 110 ~~~~~l~v~ 118 (246)
T 1sfn_A 110 TDARVSVFE 118 (246)
T ss_dssp EEEEEEEEE
T ss_pred CCEEEEEEE
Confidence 777776664
No 111
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=38.90 E-value=30 Score=30.11 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=31.2
Q ss_pred EEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCee
Q 008250 359 KPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFC 411 (572)
Q Consensus 359 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 411 (572)
....+.||..+-..--...++++|++|.+++.. +|+ ...+.+||++
T Consensus 47 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~-----~~~l~~Gd~i 92 (156)
T 3kgz_A 47 RYFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GET-----ISDVAQGDLV 92 (156)
T ss_dssp EEEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEE
T ss_pred EEEEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEE
Confidence 344566766554333456789999999998875 333 4578899976
No 112
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=38.39 E-value=33 Score=27.64 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=30.0
Q ss_pred EEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeee-eeCCCCeec
Q 008250 360 PCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRG-FLKEGDFCG 412 (572)
Q Consensus 360 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~-~l~~Gd~fG 412 (572)
...+.||..+-..--...++++|++|.+++.. +++ .. .+.+||++-
T Consensus 31 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~-----~~~~l~~Gd~i~ 77 (117)
T 2b8m_A 31 HIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL--EDQ-----EPHNYKEGNIVY 77 (117)
T ss_dssp EEEEETTCBCCCEECSSCEEEEEEESEEEEEE--TTS-----CCEEEETTCEEE
T ss_pred EEEECCCCcCCCEeCCCcEEEEEEeCEEEEEE--CCE-----EEEEeCCCCEEE
Confidence 34566666542222346689999999998765 233 24 688999763
No 113
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=38.29 E-value=30 Score=30.48 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=32.1
Q ss_pred EEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 359 KPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 359 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
....+.||..+-..--...++++|++|.+++.. +|+ ...+.+||++-
T Consensus 56 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v--~g~-----~~~l~~GD~i~ 102 (166)
T 3jzv_A 56 RYFEVGPGGHSTLERHQHAHGVMILKGRGHAMV--GRA-----VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEEEECCCBBCSSCEEEEEEEECEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 344567776654433456789999999998764 333 46789999763
No 114
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=37.75 E-value=36 Score=28.11 Aligned_cols=45 Identities=9% Similarity=0.127 Sum_probs=31.8
Q ss_pred EeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeech
Q 008250 362 LFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGE 413 (572)
Q Consensus 362 ~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 413 (572)
...||..-... +..++++.|++|.+++.. ++|. ...+++||.+--
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~-ddG~-----~~~l~aGD~~~~ 92 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQ-ADAD-----PVKIGPGSIVSI 92 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEE-TTCC-----CEEECTTEEEEE
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEe-CCCe-----EEEECCCCEEEE
Confidence 56667655544 334599999999998764 4455 357899998754
No 115
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=37.74 E-value=36 Score=27.97 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=31.7
Q ss_pred EEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 359 KPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 359 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
....+.||..+-..--...++++|++|.+++.. +++ ...+.+||++-
T Consensus 51 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 97 (126)
T 1vj2_A 51 RLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK--EQG-----EETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEEECCSSCEEEEEEESEEEEEC--SSC-----EEEEETTEEEE
T ss_pred EEEEECCCCcCCceeCCCcEEEEEEEeEEEEEE--CCE-----EEEECCCCEEE
Confidence 344566666554333447799999999998764 233 35788999763
No 116
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=37.72 E-value=57 Score=27.71 Aligned_cols=49 Identities=20% Similarity=0.338 Sum_probs=32.9
Q ss_pred cEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
+....+.||..+-..--...++++|++|.+++... +++ ...+.+||++-
T Consensus 50 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~--~~~----~~~l~~Gd~i~ 98 (147)
T 2f4p_A 50 VYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQER--GKP----ARILKKGDVVE 98 (147)
T ss_dssp EEEEEECTTCEECSEECTTCEEEEEEEEEEEEEET--TSC----CEEEETTCEEE
T ss_pred EEEEEECCCCccCceECCCceEEEEEeCEEEEEEC--CEE----EEEECCCCEEE
Confidence 34567778876643333457999999999987653 331 15688999874
No 117
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=36.78 E-value=25 Score=27.45 Aligned_cols=50 Identities=14% Similarity=0.040 Sum_probs=32.2
Q ss_pred cEEEEeCCCcEEEccCCCC-CeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYIVREGDPV-DEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~~-~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
+....++||...-..--.. .++++|++|.+++... +|.+ ...+.+||.+-
T Consensus 20 ~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~g~~----~~~l~~Gd~~~ 70 (97)
T 2fqp_A 20 VTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETP-EGSV----TSQLTRGVSYT 70 (97)
T ss_dssp EEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEET-TEEE----EEEECTTCCEE
T ss_pred EEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeC-CCCE----EEEEcCCCEEE
Confidence 3456778887642222233 3599999999987653 3311 45789999874
No 118
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=36.37 E-value=39 Score=29.20 Aligned_cols=52 Identities=4% Similarity=-0.023 Sum_probs=33.5
Q ss_pred cEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCc-----eeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGR-----SGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~-----~~~~~~~~l~~Gd~fG 412 (572)
+....+.||..+-..--...++++|++|.+++...+.++ .. ...+.+||++-
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~---~~~l~~Gd~i~ 99 (163)
T 1lr5_A 43 VWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQ---EIPFFQNTTFS 99 (163)
T ss_dssp EEEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCE---EEEECTTEEEE
T ss_pred EEEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccE---EEEeCCCCEEE
Confidence 345567787654222224568999999999987755221 11 45789999863
No 119
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=35.68 E-value=41 Score=27.99 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=32.4
Q ss_pred EEEEeCCCcEEEccCCC-CCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 359 KPCLFTDSTYIVREGDP-VDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 359 ~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
....+.||..+-..--. ..++++|++|.+++.. +|+ ...+.+||.+-
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 107 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD--NGK-----DVPIKAGDVCF 107 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE--TTE-----EEEEETTEEEE
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEE--CCE-----EEEeCCCcEEE
Confidence 45578888766432223 4689999999998765 333 45789999863
No 120
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=35.64 E-value=62 Score=29.87 Aligned_cols=46 Identities=11% Similarity=-0.003 Sum_probs=31.3
Q ss_pred EEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 361 CLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 361 ~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
..+.||..+=.---+.+++|+|++|.++.... +|+ ...+++||.+=
T Consensus 137 v~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~-~g~-----~~~l~pGd~v~ 182 (217)
T 4b29_A 137 GYWGPGLDYGWHEHLPEELYSVVSGRALFHLR-NAP-----DLMLEPGQTRF 182 (217)
T ss_dssp EEECSSCEEEEEECSSEEEEEEEEECEEEEET-TSC-----CEEECTTCEEE
T ss_pred EEECCCCcCCCCCCCCceEEEEEeCCEEEEEC-CCC-----EEecCCCCEEE
Confidence 45555555433345678999999999987653 333 35789999764
No 121
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=34.91 E-value=60 Score=28.79 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=32.3
Q ss_pred EEEeCCCcEEEc--cCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 360 PCLFTDSTYIVR--EGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 360 ~~~~~~ge~I~~--~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
...+.||...-. ......++++|++|.+++.. +|+ ...+.+||.+-
T Consensus 108 ~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~GD~i~ 155 (192)
T 1y9q_A 108 EITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF--DEQ-----WHELQQGEHIR 155 (192)
T ss_dssp EEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE
Confidence 456778876542 22345799999999998765 333 45799999863
No 122
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=34.89 E-value=40 Score=29.94 Aligned_cols=48 Identities=8% Similarity=0.123 Sum_probs=33.6
Q ss_pred cEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCee
Q 008250 358 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFC 411 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 411 (572)
+....+.||...-..-....+..+|++|.+++... +|+ ...+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld-~ge-----~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELD-DGA-----KRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECG-GGC-----EEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEEC-CCe-----EEEECCCCEE
Confidence 45667888875433333455788999999998653 233 3578999998
No 123
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=34.18 E-value=58 Score=31.14 Aligned_cols=71 Identities=6% Similarity=0.107 Sum_probs=46.4
Q ss_pred cEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 008250 358 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRA 437 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~A 437 (572)
+-...+.||..--......+++.||++|.+++... +|+ ...+++||.+=... . ...+++.
T Consensus 72 ~~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~-~g~-----~~~L~~Gds~y~p~-------~-------~~H~~~N 131 (266)
T 4e2q_A 72 MYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNT-SSS-----SKKLTVDSYAYLPP-------N-------FHHSLDC 131 (266)
T ss_dssp EEEEEECSSEECCCCCTTEEEEEEEEEECEEEEC---CC-----CEEECTTEEEEECT-------T-------CCCEEEE
T ss_pred EEEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEEC-CCc-----EEEEcCCCEEEECC-------C-------CCEEEEe
Confidence 34567888876433334567999999999988653 144 35789999874322 1 2355666
Q ss_pred eccceeeeeCH
Q 008250 438 LKEVEAFALMA 448 (572)
Q Consensus 438 lt~~~l~~l~~ 448 (572)
.++++++.+.+
T Consensus 132 ~~~Ar~l~V~k 142 (266)
T 4e2q_A 132 VESATLVVFER 142 (266)
T ss_dssp SSCEEEEEEEE
T ss_pred CCCEEEEEEEe
Confidence 67888887754
No 124
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=34.09 E-value=56 Score=29.53 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=46.8
Q ss_pred ccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEE
Q 008250 357 RLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVR 436 (572)
Q Consensus 357 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~ 436 (572)
.+....+.||..+-...-.+.++.+|++|.++ ++ ...+.+||++=.- +. +..+..
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de-------~~~~~~Gd~~~~p-------~g-------~~H~p~ 180 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DE-------TDRFGAGDIEIAD-------QE-------LEHTPV 180 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CS-------SSEEETTCEEEEC-------SS-------CCCCCE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CC-------cEEECCCeEEEeC-------cC-------CccCCE
Confidence 45678899999998888889999999999965 22 1357899986432 21 334555
Q ss_pred E--eccceeeee
Q 008250 437 A--LKEVEAFAL 446 (572)
Q Consensus 437 A--lt~~~l~~l 446 (572)
+ .++|.++..
T Consensus 181 a~~~~gc~~l~~ 192 (195)
T 2q1z_B 181 AERGLDCICLAA 192 (195)
T ss_dssp ECSSSCEEEEEE
T ss_pred eCCCCCEEEEEE
Confidence 6 678877764
No 125
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=34.07 E-value=37 Score=29.59 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=32.4
Q ss_pred cEEEEeCCCcEEE--ccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYIV--REGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I~--~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
+....+.||.... +.-...+++++|++|.+++... ++ ...+.+||.+-
T Consensus 45 ~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~--~~-----~~~l~~GD~i~ 94 (163)
T 3i7d_A 45 VNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD--QG-----EHPMVPGDCAA 94 (163)
T ss_dssp EEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC--CE-----EEEeCCCCEEE
Confidence 4456778887542 2222346999999999988753 33 35789999764
No 126
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=33.95 E-value=68 Score=31.75 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=36.0
Q ss_pred cEEEEeCCCcEEEccCCC-CCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYIVREGDP-VDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 412 (572)
+....+.||...--.--. .+++++|++|.+++...+ +|+.. ...+++||++-
T Consensus 54 ~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~---~~~l~~GD~~~ 107 (361)
T 2vqa_A 54 GVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE---IADVDKGGLWY 107 (361)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred eEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE---EEEEcCCCEEE
Confidence 445677888865433234 789999999999987654 34322 35789999764
No 127
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=33.79 E-value=67 Score=32.22 Aligned_cols=52 Identities=19% Similarity=0.116 Sum_probs=37.0
Q ss_pred cEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 412 (572)
+....+.||...-..--...++++|++|.+++...+ +|+..+ ..+.+||++-
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~---~~l~~GD~~~ 133 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFI---DDVGEGDLWY 133 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEE---EEEETTEEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEE---EEeCCCCEEE
Confidence 455678898866433334789999999999987765 355322 4789999863
No 128
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=32.79 E-value=50 Score=27.76 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=31.8
Q ss_pred EEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeech
Q 008250 359 KPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGE 413 (572)
Q Consensus 359 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 413 (572)
-...+.||..-.+. ..+++++|++|.+++.. +|+ ...+++||.+--
T Consensus 60 ~~~~~~pG~~~~h~--~~~E~~~VLeG~~~l~~--~g~-----~~~l~~GD~i~~ 105 (133)
T 2pyt_A 60 GFMQWDNAFFPWTL--NYDEIDMVLEGELHVRH--EGE-----TMIAKAGDVMFI 105 (133)
T ss_dssp EEEEEEEEEEEEEC--SSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEEEE
T ss_pred EEEEECCCCccccC--CCCEEEEEEECEEEEEE--CCE-----EEEECCCcEEEE
Confidence 34567778432332 46899999999998765 344 357899998753
No 129
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=32.31 E-value=45 Score=26.90 Aligned_cols=34 Identities=18% Similarity=0.391 Sum_probs=24.5
Q ss_pred CCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 374 DPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 374 d~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
...+++++|++|.+++...++ .+ ...+++||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~-~~----~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGD-TA----PRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTC-SS----CEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEECCE-EE----EEEECCCCEEE
Confidence 456799999999998876332 11 14789999874
No 130
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=32.05 E-value=48 Score=33.98 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=39.2
Q ss_pred hccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 356 ERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 356 ~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
-.+....+.||..+...-...+++++|++|..++...+.+... ...+++||++-
T Consensus 49 ~s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 102 (416)
T 1uij_A 49 YRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD---SYNLHPGDAQR 102 (416)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE---EEEECTTEEEE
T ss_pred EEEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCe---EEEecCCCEEE
Confidence 3466788999987766655678999999999997654333322 36789999873
No 131
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=31.82 E-value=41 Score=29.04 Aligned_cols=47 Identities=11% Similarity=0.144 Sum_probs=31.9
Q ss_pred cEEEEeCCCcE-E-EccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCee
Q 008250 358 LKPCLFTDSTY-I-VREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFC 411 (572)
Q Consensus 358 l~~~~~~~ge~-I-~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 411 (572)
+....+.||.. . .+.-....++++|++|.+++.. +|+ ...+.+||++
T Consensus 48 ~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 96 (162)
T 3l2h_A 48 IHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM--END-----QYPIAPGDFV 96 (162)
T ss_dssp EEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE--TTE-----EEEECTTCEE
T ss_pred EEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE--CCE-----EEEeCCCCEE
Confidence 34567788874 2 1212256799999999998764 333 3578999987
No 132
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=31.03 E-value=75 Score=29.58 Aligned_cols=47 Identities=9% Similarity=0.049 Sum_probs=35.2
Q ss_pred cEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCee
Q 008250 358 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFC 411 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 411 (572)
+....+.||..+-..--+..++++|++|.+++.. +|+ ...+.+||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV--GDV-----TRKMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE--CCE-----EEEECCCCEE
Confidence 4555688998876655567899999999998875 343 4578999943
No 133
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=31.01 E-value=65 Score=30.18 Aligned_cols=49 Identities=12% Similarity=0.044 Sum_probs=36.4
Q ss_pred ccEEEEeCCCcEEEc-cCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 357 RLKPCLFTDSTYIVR-EGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 357 ~l~~~~~~~ge~I~~-~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
.+....++||..+-. +--...+.++|++|.+.+.. +|+ ...+.+||++-
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~--~~~-----~~~l~~GD~~~ 215 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL--EEN-----YYPVTAGDIIW 215 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE--CCE-----EEEcCCCCEEE
Confidence 466778999987754 34456799999999997654 444 45789999864
No 134
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=30.95 E-value=1e+02 Score=30.61 Aligned_cols=73 Identities=7% Similarity=0.038 Sum_probs=49.6
Q ss_pred EEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEe
Q 008250 359 KPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRAL 438 (572)
Q Consensus 359 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Al 438 (572)
....+++|..--..-....++|+|++|..++.. +|+ ...+.+||+|---.- ....+.+.
T Consensus 271 ~~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v--~~~-----~~~~~~GD~~~vP~~--------------~~H~~~n~ 329 (354)
T 2d40_A 271 FLQLLPKGFASRVARTTDSTIYHVVEGSGQVII--GNE-----TFSFSAKDIFVVPTW--------------HGVSFQTT 329 (354)
T ss_dssp EEEEECTTCBCCCBEESSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEEEECTT--------------CCEEEEEE
T ss_pred EEEEECCCCCCCceecCCcEEEEEEeCeEEEEE--CCE-----EEEEcCCCEEEECCC--------------CeEEEEeC
Confidence 455777777654444456699999999998766 443 457899999753321 23556667
Q ss_pred ccceeeeeCHHHHH
Q 008250 439 KEVEAFALMAEELK 452 (572)
Q Consensus 439 t~~~l~~l~~~~~~ 452 (572)
+++.++.++..-+.
T Consensus 330 e~~~l~~~~d~p~~ 343 (354)
T 2d40_A 330 QDSVLFSFSDRPVQ 343 (354)
T ss_dssp EEEEEEEEESHHHH
T ss_pred CCEEEEEEcCHHHH
Confidence 88888888655443
No 135
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=30.15 E-value=95 Score=30.66 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=36.3
Q ss_pred cEEEEeCCCcEEEccCCC-CCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYIVREGDP-VDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 412 (572)
+....+.||..+-..--+ ..++++|++|.+++...+ +|+.. ...+++||++-
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~---~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKAS---VSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEE---EEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEE---EEEECCCCEEE
Confidence 456688898876543333 489999999999986543 34411 35789999874
No 136
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=29.71 E-value=56 Score=33.67 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=39.8
Q ss_pred hccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 356 ERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 356 ~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
-.+....+.||..+.-.-..++++++|++|..++...+++... ...+++||++-
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 114 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRD---SYILEQGHAQK 114 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE---EEEEETTEEEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCE---EEEeCCCCEEE
Confidence 3467789999998877655677999999999988654443322 46788999763
No 137
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=29.04 E-value=82 Score=26.60 Aligned_cols=51 Identities=14% Similarity=-0.029 Sum_probs=31.7
Q ss_pred EEEEeCCCcEEEccCC-CCCeEEEEEeeEEEEEEecCCce-eeeeeeeeCCCCee
Q 008250 359 KPCLFTDSTYIVREGD-PVDEMLFIIRGRLESVTTDGGRS-GFFNRGFLKEGDFC 411 (572)
Q Consensus 359 ~~~~~~~ge~I~~~Gd-~~~~lyfI~~G~v~v~~~~~g~~-~~~~~~~l~~Gd~f 411 (572)
....+.||..+-..-- ..+++++|++|.+.+...+.... .. ...+.+||++
T Consensus 46 ~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~--~~~l~~Gd~i 98 (148)
T 2oa2_A 46 TLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHF--QEEVFDDYAI 98 (148)
T ss_dssp EEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCE--EEEEETTCEE
T ss_pred EEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCcccccee--eEEECCCCEE
Confidence 3456778775532222 34599999999999876433210 00 1578899975
No 138
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=29.04 E-value=52 Score=27.40 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=28.7
Q ss_pred EEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 361 CLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 361 ~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
..+.||..+-..--...++.+|++|.+++....+|+ ...+.+||++-
T Consensus 44 ~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~~-----~~~l~~Gd~~~ 90 (145)
T 3ht1_A 44 FEVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQGR-----TEEVGPGEAIF 90 (145)
T ss_dssp EEEEEEEECCCEECSSCEEEEEEEECEEEEEGGGTE-----EEEECTTCEEE
T ss_pred EEECCCCcCCCccCCCceEEEEEEeEEEEEEeECCE-----EEEECCCCEEE
Confidence 345555543222233556778999999876323343 46789999763
No 139
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=28.86 E-value=1.1e+02 Score=32.13 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=43.1
Q ss_pred HHHHHhccEEEEeCCCcEEEccC-CCCCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCeec
Q 008250 351 LDAICERLKPCLFTDSTYIVREG-DPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 351 l~~l~~~l~~~~~~~ge~I~~~G-d~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 412 (572)
+..+--.+....+.||-++--.= -.++++.+|++|.+++...+ +|+..+ ...+.+||+|-
T Consensus 389 L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~--~~~L~~GDV~v 450 (531)
T 3fz3_A 389 LRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAIL--DQEVQQGQLFI 450 (531)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred cccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEE--EEEecCCeEEE
Confidence 44444567788999998875432 23689999999999986544 355443 57899999874
No 140
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=28.33 E-value=38 Score=29.94 Aligned_cols=45 Identities=11% Similarity=0.026 Sum_probs=30.2
Q ss_pred EEeCC-CcE-EEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 361 CLFTD-STY-IVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 361 ~~~~~-ge~-I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
..++| |.. =-+.-..+.+++||++|.+++.. +|+ ...+.+||.+=
T Consensus 93 v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl--~g~-----~~~L~~Gds~~ 139 (166)
T 2vpv_A 93 LKLPAISGQKKLSNSFRTYITFHVIQGIVEVTV--CKN-----KFLSVKGSTFQ 139 (166)
T ss_dssp EEECSSGGGCEEEECCSEEEEEEEEESEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEECCCCCCCCCccCCCceEEEEEEEeEEEEEE--CCE-----EEEEcCCCEEE
Confidence 46777 531 11123356789999999999876 333 45789999874
No 141
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=28.11 E-value=63 Score=33.44 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=38.4
Q ss_pred ccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 357 RLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 357 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
.+....+.||..+...--.++++++|++|.+++...+.+... ...+++||++-
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 139 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCE---EEEecCCCEEE
Confidence 456678999987766644578999999999987654333222 46789999874
No 142
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=28.02 E-value=59 Score=26.44 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=30.1
Q ss_pred cEEEEeCCCcEEE--ccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYIV--REGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I~--~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
+....+.||..+- ..-+....+|+|++|.+.+.. +++ ...+.+||++-
T Consensus 28 ~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 77 (125)
T 3cew_A 28 VSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI--DGE-----KIELQAGDWLR 77 (125)
T ss_dssp EEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE--TTE-----EEEEETTEEEE
T ss_pred EEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 3445677876552 222223456779999998765 233 35788999764
No 143
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=27.92 E-value=83 Score=31.58 Aligned_cols=77 Identities=12% Similarity=0.097 Sum_probs=56.5
Q ss_pred cEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 008250 358 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRA 437 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~A 437 (572)
+....+.+|+..-..-..+..+|.|.+|.-.+.. +|+ ....++||.|---.- ...+..+
T Consensus 281 ~~~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I--~~~-----~~~w~~gD~fvvP~w--------------~~h~~~n 339 (368)
T 3nw4_A 281 CEFHRLRAGTETATRNEVGSTVFQVFEGAGAVVM--NGE-----TTKLEKGDMFVVPSW--------------VPWSLQA 339 (368)
T ss_dssp EEEEEECTTCBCCCEEESSCEEEEEEESCEEEEE--TTE-----EEEECTTCEEEECTT--------------CCEEEEE
T ss_pred hheEEECCCCccCCeeccccEEEEEEeCcEEEEE--CCE-----EEEecCCCEEEECCC--------------CcEEEEe
Confidence 4466788888775555677899999999987654 343 356899999864432 3467788
Q ss_pred eccceeeeeCHHHHHHHH
Q 008250 438 LKEVEAFALMAEELKFVA 455 (572)
Q Consensus 438 lt~~~l~~l~~~~~~~l~ 455 (572)
.++|.++.++-.-+.+-+
T Consensus 340 ~~~a~Lf~~~D~Pl~~~L 357 (368)
T 3nw4_A 340 ETQFDLFRFSDAPIMEAL 357 (368)
T ss_dssp SSSEEEEEEESHHHHHHT
T ss_pred CCCEEEEEEeCHHHHHHh
Confidence 899999999887776543
No 144
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=27.90 E-value=1.2e+02 Score=31.63 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=41.5
Q ss_pred HHHHHhccEEEEeCCCcEEEccCCC-CCeEEEEEeeEEEEEEecC-CceeeeeeeeeCCCCeec
Q 008250 351 LDAICERLKPCLFTDSTYIVREGDP-VDEMLFIIRGRLESVTTDG-GRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 351 l~~l~~~l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~-g~~~~~~~~~l~~Gd~fG 412 (572)
+..+-..+....+.||..+--.=-+ ++++++|++|.+++...+. |+..+ ...+.+||++=
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~--~~~l~~GDv~v 423 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVF--DGELRRGQLLV 423 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEE--eEEEcCCCEEE
Confidence 4444456777888999876444333 6899999999999865443 44332 35699999874
No 145
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=26.32 E-value=1.1e+02 Score=32.27 Aligned_cols=60 Identities=17% Similarity=0.219 Sum_probs=41.3
Q ss_pred HHHHHhccEEEEeCCCcEEEccCCC-CCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCeec
Q 008250 351 LDAICERLKPCLFTDSTYIVREGDP-VDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 351 l~~l~~~l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 412 (572)
+..+--.+....+.||..+--.=-+ ++++++|++|.+++...+ +|.+.+ ...+.+||++-
T Consensus 367 L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~--~~~l~~GDv~v 428 (510)
T 3c3v_A 367 LRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVY--DEELQEGHVLV 428 (510)
T ss_dssp HHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred cccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEE--eEEEcCCcEEE
Confidence 3444455677888999876443333 689999999999986544 344433 35699999873
No 146
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=26.17 E-value=1.2e+02 Score=28.03 Aligned_cols=47 Identities=11% Similarity=-0.033 Sum_probs=34.2
Q ss_pred EEEeCC-CcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeech
Q 008250 360 PCLFTD-STYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGE 413 (572)
Q Consensus 360 ~~~~~~-ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 413 (572)
...+.| |..+-..--...++++|++|.+++... |+ ...+.+||.+--
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~i 196 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVE--GC-----TVEMKFGTAYFC 196 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEET--TE-----EEEECTTCEEEE
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEEC--CE-----EEEECCCCEEEE
Confidence 456888 877655445567999999999987652 33 356899998753
No 147
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=25.68 E-value=1.1e+02 Score=32.01 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=39.3
Q ss_pred HhccEEEEeCCCcEEEccCCC-CCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCeec
Q 008250 355 CERLKPCLFTDSTYIVREGDP-VDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 355 ~~~l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 412 (572)
--.+....+.||..+--.=-+ ++++++|++|.+++...+ +|.+.+ ...+.+||++-
T Consensus 337 ~is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~--~~~l~~GDv~v 394 (476)
T 1fxz_A 337 RLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVF--DGELQEGRVLI 394 (476)
T ss_dssp TCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred cceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEe--eeEEcCCCEEE
Confidence 345677888999876444333 689999999999986544 354433 35689999873
No 148
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=25.56 E-value=1.1e+02 Score=30.63 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=36.2
Q ss_pred cEEEEeCCCcEEEccCCCC-CeEEEEEeeEEEEEEe-cCCceeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYIVREGDPV-DEMLFIIRGRLESVTT-DGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~~-~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fG 412 (572)
+....+.||...-..--.. .++++|++|.+++... .+|+.. ...+.+||.+-
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~---~~~l~~GD~~~ 312 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHAR---TFNYQAGDVGY 312 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEE---EEEEESSCEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEE---EEEEcCCCEEE
Confidence 4556788888765433344 8999999999987654 344322 35789999874
No 149
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=25.55 E-value=81 Score=29.98 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=34.5
Q ss_pred cEEEEeCCCcEEEc-cCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYIVR-EGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I~~-~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
+....+.||..+-. .--...++++|++|.+++.. +|+ ...+++||++-
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i--~~~-----~~~l~~GD~i~ 232 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL--DNE-----WYPVEKGDYIF 232 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 45567889887643 33356799999999998765 333 45789999874
No 150
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=25.15 E-value=54 Score=33.31 Aligned_cols=48 Identities=17% Similarity=0.110 Sum_probs=35.8
Q ss_pred EEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 359 KPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 359 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
....+.||+.+-..--...++|||++|.-.. +..+|+ ...+++||++-
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~-t~v~G~-----~~~~~~GD~i~ 173 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAY-TIVDGH-----KVELGANDFVL 173 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEE-EEETTE-----EEEECTTCEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEE-EEECCE-----EEEEcCCCEEE
Confidence 6778999998866555667999999998644 334555 35789999874
No 151
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=24.41 E-value=1.7e+02 Score=25.99 Aligned_cols=52 Identities=8% Similarity=0.006 Sum_probs=33.3
Q ss_pred cEEEEeCCCcEEE-------ccCC--CCCeEEEEEeeEEEEEEecC-CceeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYIV-------REGD--PVDEMLFIIRGRLESVTTDG-GRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I~-------~~Gd--~~~~lyfI~~G~v~v~~~~~-g~~~~~~~~~l~~Gd~fG 412 (572)
+....+.||...- +.-. ...++++|++|.+.+...+. |+. . ...+.+||.+-
T Consensus 69 ~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~~-~--~~~l~~GD~v~ 130 (190)
T 1x82_A 69 FATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDA-K--WISMEPGTVVY 130 (190)
T ss_dssp EEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCE-E--EEEECTTCEEE
T ss_pred EEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCcE-E--EEEECCCcEEE
Confidence 3445788887621 1111 23699999999999876544 332 2 36799999863
No 152
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=23.92 E-value=1.6e+02 Score=30.54 Aligned_cols=61 Identities=16% Similarity=0.234 Sum_probs=42.4
Q ss_pred HHHHHHhccEEEEeCCCcEEEccC-CCCCeEEEEEeeEEEEEEec-CCceeeeeeeeeCCCCeec
Q 008250 350 LLDAICERLKPCLFTDSTYIVREG-DPVDEMLFIIRGRLESVTTD-GGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 350 ~l~~l~~~l~~~~~~~ge~I~~~G-d~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 412 (572)
.+..+--.+....+.||.+..-.= -.++++++|++|.+++...+ +|++.+ -..+.+||+|=
T Consensus 316 ~L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~--~~~l~~GDv~v 378 (459)
T 2e9q_A 316 ILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVF--DGEVREGQVLM 378 (459)
T ss_dssp THHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred cccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEE--eeEEeCCcEEE
Confidence 345555567778889988765432 23689999999999986544 354433 35799999874
No 153
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=22.25 E-value=1.1e+02 Score=29.34 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=37.2
Q ss_pred hccEEEEeCCCcEEEc-cCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 356 ERLKPCLFTDSTYIVR-EGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 356 ~~l~~~~~~~ge~I~~-~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
..+....++||..+-. +-....+.++|++|...+.. +|+ ...+++||++-
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~--~~~-----~~~v~~GD~~~ 241 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL--NQD-----WVEVEAGDFMW 241 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE--TTE-----EEEEETTCEEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 3467789999999974 44445688999999997653 444 46789999863
No 154
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=22.09 E-value=77 Score=32.15 Aligned_cols=75 Identities=11% Similarity=0.018 Sum_probs=49.0
Q ss_pred cEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEE
Q 008250 358 LKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRA 437 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~A 437 (572)
+....+.||+..-..--...++|+|++|...+.. +|+ ...+++||+|-.-.- ....+..
T Consensus 296 ~~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V--~ge-----~~~~~~GD~~~iP~g--------------~~H~~~N 354 (394)
T 3bu7_A 296 ASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV--GGK-----RFDWSEHDIFCVPAW--------------TWHEHCN 354 (394)
T ss_dssp EEEEEECTTCBCCCEEESSCEEEEEEECCEEEEE--TTE-----EEEECTTCEEEECTT--------------CCEEEEE
T ss_pred EEEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE--CCE-----EEEEeCCCEEEECCC--------------CeEEeEe
Confidence 4667888988876655567789999999885433 454 357899999754321 1234444
Q ss_pred e---ccceeeeeCHHHHHH
Q 008250 438 L---KEVEAFALMAEELKF 453 (572)
Q Consensus 438 l---t~~~l~~l~~~~~~~ 453 (572)
. +++.++.++..-+.+
T Consensus 355 ~g~~e~~~ll~i~D~Pl~~ 373 (394)
T 3bu7_A 355 TQERDDACLFSFNDFPVME 373 (394)
T ss_dssp CCSSCCEEEEEEESHHHHH
T ss_pred CCCCCCeEEEEeeCHHHHH
Confidence 3 467777776554443
No 155
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=21.72 E-value=2.3e+02 Score=27.18 Aligned_cols=96 Identities=17% Similarity=0.134 Sum_probs=64.8
Q ss_pred ChhHHHHHHHHHHHHHhhc--CcCCccCCHHHHHHHHhccEEEEeCCCcEEEccCCCCCeEEEEEeeEEEEEEecCCcee
Q 008250 321 PKDLRRDIKRHLCLALVRR--VPLFENMDERLLDAICERLKPCLFTDSTYIVREGDPVDEMLFIIRGRLESVTTDGGRSG 398 (572)
Q Consensus 321 p~~Lr~~i~~~~~~~ll~~--v~~F~~l~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~g~~~ 398 (572)
|-+|+.-+..|. .++-.+ +.+|.. . -..+...+.+|+.+..+... +..+.+++|...+.. +|.
T Consensus 180 pf~Lk~Wl~~h~-~ei~s~~~~sLFg~-~--------~eteV~l~G~Ges~~~~~~~-d~wiWqLEGss~Vt~--~~q-- 244 (286)
T 2qnk_A 180 PMSLDAWLDSHH-RELQAGTPLSLFGD-T--------YETQVIAYGQGSSEGLRQNV-DVWLWQLEGSSVVTM--GGR-- 244 (286)
T ss_dssp CEEHHHHHHHTH-HHHHTTCCEESSCT-T--------SSEEEEEECSEEEEECCCSS-CEEEEEEESCEEEEE--TTE--
T ss_pred CcCHHHHHHhhh-HHHhcCCccccccC-C--------CceEEEEEcCCccccccCcC-cEEEEEEcCceEEEE--CCe--
Confidence 456776666554 233333 345642 1 12566779999999999888 999999999986433 333
Q ss_pred eeeeeeeCCCCeechhhhhhhcCCCCCCCCCCcccEEEEeccceeeeeCH
Q 008250 399 FFNRGFLKEGDFCGEELLTWALDPKSGVNLPSSTRTVRALKEVEAFALMA 448 (572)
Q Consensus 399 ~~~~~~l~~Gd~fGe~~l~~~~~~~~~~~l~~s~~tv~Alt~~~l~~l~~ 448 (572)
...|.+||..---+ ...++..+.++|.++.+..
T Consensus 245 ---~~~L~~~DsLLIpa--------------~~~y~~~r~~gsv~L~I~~ 277 (286)
T 2qnk_A 245 ---RLSLAPDDSLLVLA--------------GTSYAWERTQGSVALSVTQ 277 (286)
T ss_dssp ---EEEECTTEEEEECT--------------TCCEEEEECTTCEEEEEEE
T ss_pred ---EEeccCCCEEEecC--------------CCeEEEEecCCeEEEEEEE
Confidence 46788988753222 1457899999999998754
No 156
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=21.64 E-value=1.1e+02 Score=29.64 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=33.9
Q ss_pred cEEEEeCCCcEEEccCCC-CCeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCeec
Q 008250 358 LKPCLFTDSTYIVREGDP-VDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCG 412 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 412 (572)
+......||...-..--. .+++++|++|.+++.. +|+ ...+.+||++-
T Consensus 48 ~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 96 (337)
T 1y3t_A 48 IVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL--DGE-----RYLLISGDYAN 96 (337)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEEEeCCCCCCCceeCCCceEEEEEEECEEEEEE--CCE-----EEEECCCCEEE
Confidence 345577888766333233 7899999999998764 344 35799999864
No 157
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=21.53 E-value=33 Score=27.14 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=32.1
Q ss_pred cEEEEeCCCcEEEccCCCC-CeEEEEEeeEEEEEEecCCceeeeeeeeeCCCCee
Q 008250 358 LKPCLFTDSTYIVREGDPV-DEMLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFC 411 (572)
Q Consensus 358 l~~~~~~~ge~I~~~Gd~~-~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 411 (572)
++...++||+-+-..--+. ...++|.+|.+++...+ |... ...+.+|+.+
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d-~~~~---~~~l~~G~~~ 69 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPD-GTRS---LAQLKTGRSY 69 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTT-SCEE---CCCBCTTCCE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCC-CceE---EEEecCCcEE
Confidence 4567889998876554444 46788889999876533 3322 2457788754
Done!