Query 008251
Match_columns 572
No_of_seqs 532 out of 4323
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 21:25:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 1.6E-64 3.4E-69 493.8 41.1 355 162-553 2-362 (397)
2 KOG0543 FKBP-type peptidyl-pro 100.0 1.7E-36 3.7E-41 297.0 21.1 349 45-514 1-358 (397)
3 KOG0545 Aryl-hydrocarbon recep 100.0 1.7E-36 3.6E-41 274.9 18.2 277 267-545 7-328 (329)
4 KOG0549 FKBP-type peptidyl-pro 100.0 1.9E-28 4.1E-33 213.4 13.8 169 85-262 1-177 (188)
5 KOG0549 FKBP-type peptidyl-pro 100.0 2.1E-27 4.5E-32 206.9 16.4 176 197-386 1-180 (188)
6 KOG0544 FKBP-type peptidyl-pro 99.9 1.3E-26 2.9E-31 176.9 11.7 106 38-143 2-107 (108)
7 COG0545 FkpA FKBP-type peptidy 99.9 4E-26 8.6E-31 204.0 12.8 108 33-143 97-204 (205)
8 KOG0544 FKBP-type peptidyl-pro 99.9 1.1E-24 2.4E-29 166.4 11.0 106 271-381 2-107 (108)
9 PRK11570 peptidyl-prolyl cis-t 99.9 6.1E-22 1.3E-26 184.5 14.5 108 33-143 98-205 (206)
10 TIGR03516 ppisom_GldI peptidyl 99.9 5E-21 1.1E-25 173.9 14.1 110 33-144 65-176 (177)
11 KOG0552 FKBP-type peptidyl-pro 99.9 2.9E-21 6.2E-26 177.7 12.5 108 33-143 116-225 (226)
12 COG0545 FkpA FKBP-type peptidy 99.8 7.6E-21 1.6E-25 170.2 11.9 103 150-260 98-204 (205)
13 KOG4234 TPR repeat-containing 99.8 1.1E-19 2.4E-24 161.0 15.0 144 395-551 91-234 (271)
14 KOG0553 TPR repeat-containing 99.8 5.2E-20 1.1E-24 174.3 12.5 125 394-533 76-200 (304)
15 PRK10902 FKBP-type peptidyl-pr 99.8 2.1E-19 4.6E-24 173.5 14.8 110 33-146 142-251 (269)
16 PF00254 FKBP_C: FKBP-type pep 99.8 1.4E-18 3.1E-23 143.0 11.9 93 49-141 1-94 (94)
17 PRK15095 FKBP-type peptidyl-pr 99.8 2.2E-18 4.9E-23 153.6 10.0 125 52-192 4-138 (156)
18 COG1047 SlpA FKBP-type peptidy 99.8 1.8E-18 3.8E-23 152.5 9.0 130 52-197 2-140 (174)
19 KOG0552 FKBP-type peptidyl-pro 99.8 5.2E-18 1.1E-22 156.3 12.0 105 149-260 116-225 (226)
20 TIGR03516 ppisom_GldI peptidyl 99.7 6.2E-17 1.3E-21 147.2 12.3 105 151-261 67-176 (177)
21 PRK10737 FKBP-type peptidyl-pr 99.7 4.3E-17 9.2E-22 148.9 11.2 124 52-192 2-134 (196)
22 PRK11570 peptidyl-prolyl cis-t 99.7 1.2E-16 2.5E-21 149.1 12.5 103 150-260 99-205 (206)
23 PF00254 FKBP_C: FKBP-type pep 99.7 1.3E-15 2.9E-20 125.3 12.2 94 282-379 1-94 (94)
24 KOG0548 Molecular co-chaperone 99.6 8.9E-16 1.9E-20 155.3 12.1 117 398-529 357-473 (539)
25 KOG0547 Translocase of outer m 99.6 3.6E-15 7.7E-20 148.8 14.2 130 388-532 104-234 (606)
26 KOG4648 Uncharacterized conser 99.6 1.8E-15 4E-20 144.6 10.2 122 391-527 89-210 (536)
27 PRK10902 FKBP-type peptidyl-pr 99.6 8.3E-15 1.8E-19 141.7 12.7 104 150-262 143-250 (269)
28 KOG0551 Hsp90 co-chaperone CNS 99.6 1.5E-14 3.3E-19 138.1 11.6 114 397-521 79-192 (390)
29 KOG0550 Molecular chaperone (D 99.5 4E-14 8.7E-19 138.9 11.0 131 394-536 244-374 (486)
30 PLN03088 SGT1, suppressor of 99.5 1.2E-13 2.6E-18 141.8 14.2 119 399-532 2-120 (356)
31 PRK15359 type III secretion sy 99.5 6.1E-13 1.3E-17 118.4 13.3 114 402-530 27-140 (144)
32 TIGR00990 3a0801s09 mitochondr 99.4 1.7E-12 3.6E-17 144.1 17.5 134 366-516 95-228 (615)
33 KOG0548 Molecular co-chaperone 99.4 5.1E-13 1.1E-17 135.5 11.5 113 399-526 2-114 (539)
34 KOG4642 Chaperone-dependent E3 99.4 9.6E-13 2.1E-17 120.5 8.4 117 397-528 8-129 (284)
35 COG1047 SlpA FKBP-type peptidy 99.4 1.4E-12 3.1E-17 115.3 9.1 124 168-308 2-134 (174)
36 PRK15095 FKBP-type peptidyl-pr 99.4 1.4E-12 2.9E-17 116.5 8.7 68 168-235 4-75 (156)
37 PRK15363 pathogenicity island 99.4 1.3E-11 2.8E-16 108.3 13.8 105 398-517 34-138 (157)
38 KOG0376 Serine-threonine phosp 99.3 2.4E-12 5.3E-17 129.7 8.1 122 398-534 3-124 (476)
39 TIGR02552 LcrH_SycD type III s 99.3 2.6E-11 5.5E-16 106.9 13.3 116 399-529 17-132 (135)
40 KOG0546 HSP90 co-chaperone CPR 99.3 2.9E-12 6.3E-17 124.2 7.5 155 391-545 214-372 (372)
41 KOG0624 dsRNA-activated protei 99.3 7.7E-12 1.7E-16 120.1 9.1 166 393-571 263-444 (504)
42 PRK10737 FKBP-type peptidyl-pr 99.3 1.5E-11 3.4E-16 112.6 8.8 80 169-261 3-85 (196)
43 KOG4626 O-linked N-acetylgluco 99.2 4.2E-11 9.2E-16 122.9 10.3 132 398-545 251-382 (966)
44 PF13414 TPR_11: TPR repeat; P 99.2 6.8E-11 1.5E-15 91.0 7.2 65 449-513 4-69 (69)
45 PRK11189 lipoprotein NlpI; Pro 99.2 4E-10 8.6E-15 113.2 13.8 104 398-516 63-166 (296)
46 PRK10370 formate-dependent nit 99.1 8.1E-10 1.8E-14 103.8 13.5 111 398-523 72-185 (198)
47 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.7E-09 3.7E-14 92.5 13.3 111 400-522 3-116 (119)
48 KOG4626 O-linked N-acetylgluco 99.1 3.8E-10 8.3E-15 116.1 10.5 111 400-525 355-465 (966)
49 TIGR00990 3a0801s09 mitochondr 99.1 1.5E-09 3.3E-14 120.6 14.6 137 398-534 330-485 (615)
50 KOG0624 dsRNA-activated protei 99.0 2.3E-09 5.1E-14 103.3 10.7 113 397-524 36-148 (504)
51 PF13432 TPR_16: Tetratricopep 99.0 1.6E-09 3.5E-14 82.1 7.7 65 452-516 1-65 (65)
52 PRK02603 photosystem I assembl 99.0 1.1E-08 2.4E-13 94.1 14.5 110 394-515 30-153 (172)
53 KOG1126 DNA-binding cell divis 99.0 1.2E-09 2.5E-14 114.1 8.6 114 400-528 422-535 (638)
54 KOG4555 TPR repeat-containing 99.0 3.7E-08 8.1E-13 82.2 15.1 134 392-546 36-173 (175)
55 COG3063 PilF Tfp pilus assembl 99.0 1.2E-08 2.6E-13 93.8 13.1 134 394-527 30-184 (250)
56 PRK15359 type III secretion sy 98.9 9.7E-09 2.1E-13 91.4 11.4 100 419-536 13-112 (144)
57 PRK09782 bacteriophage N4 rece 98.9 1.5E-08 3.2E-13 116.0 15.4 116 400-530 610-725 (987)
58 KOG0547 Translocase of outer m 98.9 1.2E-08 2.6E-13 102.8 12.8 116 396-528 323-438 (606)
59 PRK15331 chaperone protein Sic 98.9 1.2E-08 2.6E-13 90.0 11.3 103 399-517 37-139 (165)
60 TIGR03302 OM_YfiO outer membra 98.9 3.3E-08 7.1E-13 95.9 15.6 114 398-523 32-156 (235)
61 PF12895 Apc3: Anaphase-promot 98.9 4.8E-09 1E-13 84.1 7.7 83 412-508 2-84 (84)
62 KOG1155 Anaphase-promoting com 98.9 2.9E-08 6.2E-13 99.6 14.4 130 399-544 364-493 (559)
63 cd00189 TPR Tetratricopeptide 98.9 8.9E-09 1.9E-13 82.9 9.0 98 402-514 3-100 (100)
64 TIGR00115 tig trigger factor. 98.9 2.3E-09 5E-14 112.7 6.1 101 51-159 145-245 (408)
65 COG0544 Tig FKBP-type peptidyl 98.9 2E-09 4.4E-14 111.8 5.4 141 9-159 113-256 (441)
66 KOG1173 Anaphase-promoting com 98.9 1.8E-08 3.9E-13 103.3 11.7 120 401-528 416-535 (611)
67 CHL00033 ycf3 photosystem I as 98.9 8.1E-08 1.8E-12 88.0 15.0 110 395-516 31-154 (168)
68 PRK15179 Vi polysaccharide bio 98.9 2.6E-08 5.5E-13 109.9 13.7 124 398-536 85-208 (694)
69 KOG1308 Hsp70-interacting prot 98.8 3.1E-09 6.8E-14 102.8 5.4 109 391-514 106-214 (377)
70 KOG0553 TPR repeat-containing 98.8 2.2E-08 4.8E-13 95.8 10.7 100 439-544 77-176 (304)
71 PRK10370 formate-dependent nit 98.8 3.3E-08 7.2E-13 92.8 11.9 119 412-546 52-173 (198)
72 PF13371 TPR_9: Tetratricopept 98.8 1.9E-08 4.1E-13 78.2 8.5 71 454-524 1-71 (73)
73 PRK12370 invasion protein regu 98.8 3.9E-08 8.4E-13 107.6 13.9 107 404-525 343-450 (553)
74 PF13414 TPR_11: TPR repeat; P 98.8 5.2E-09 1.1E-13 80.4 5.1 66 399-479 3-69 (69)
75 PRK10803 tol-pal system protei 98.8 1.2E-07 2.7E-12 92.5 15.2 114 400-525 143-260 (263)
76 KOG1155 Anaphase-promoting com 98.8 3.7E-08 7.9E-13 98.8 11.6 119 404-537 335-453 (559)
77 COG5010 TadD Flp pilus assembl 98.8 6.7E-08 1.5E-12 90.9 12.7 120 401-535 102-221 (257)
78 PRK12370 invasion protein regu 98.8 4.1E-08 8.8E-13 107.5 13.2 93 412-519 317-409 (553)
79 TIGR02521 type_IV_pilW type IV 98.8 1.8E-07 3.9E-12 89.4 16.0 117 402-531 102-218 (234)
80 PRK11189 lipoprotein NlpI; Pro 98.8 8E-08 1.7E-12 96.5 13.4 107 413-530 40-146 (296)
81 TIGR02521 type_IV_pilW type IV 98.8 1.5E-07 3.2E-12 90.0 14.6 84 450-533 101-186 (234)
82 PRK09782 bacteriophage N4 rece 98.8 7.5E-08 1.6E-12 110.3 14.3 108 413-536 590-697 (987)
83 PRK01490 tig trigger factor; P 98.7 2.9E-08 6.3E-13 105.2 9.6 99 52-158 157-255 (435)
84 KOG1125 TPR repeat-containing 98.7 1.7E-08 3.6E-13 104.0 7.3 98 402-514 433-530 (579)
85 PF14559 TPR_19: Tetratricopep 98.7 2.7E-08 5.9E-13 76.1 6.7 67 459-525 2-68 (68)
86 TIGR02552 LcrH_SycD type III s 98.7 5.5E-08 1.2E-12 85.5 9.5 102 420-536 4-105 (135)
87 PF13525 YfiO: Outer membrane 98.7 3.9E-07 8.5E-12 86.1 15.4 131 398-540 4-151 (203)
88 PF13512 TPR_18: Tetratricopep 98.7 2.9E-07 6.3E-12 79.6 13.0 110 399-520 10-137 (142)
89 PRK10866 outer membrane biogen 98.7 5.5E-07 1.2E-11 87.3 16.3 130 399-540 32-185 (243)
90 PRK15174 Vi polysaccharide exp 98.7 1.2E-07 2.5E-12 105.8 13.0 111 405-530 218-332 (656)
91 KOG1126 DNA-binding cell divis 98.7 9.3E-08 2E-12 100.1 11.2 121 400-535 490-610 (638)
92 PRK15174 Vi polysaccharide exp 98.7 2.4E-07 5.3E-12 103.2 13.7 109 400-523 247-359 (656)
93 TIGR03302 OM_YfiO outer membra 98.6 8.3E-07 1.8E-11 86.0 15.3 125 400-536 71-223 (235)
94 PLN02789 farnesyltranstransfer 98.6 6.7E-07 1.4E-11 90.1 14.9 114 399-527 71-187 (320)
95 PF13429 TPR_15: Tetratricopep 98.6 1.2E-07 2.5E-12 94.7 8.4 123 399-536 146-268 (280)
96 PRK15363 pathogenicity island 98.6 4E-07 8.7E-12 80.2 10.6 88 450-537 37-124 (157)
97 PRK11447 cellulose synthase su 98.6 1.1E-06 2.4E-11 104.5 17.7 126 399-526 303-429 (1157)
98 COG1729 Uncharacterized protei 98.6 1.1E-06 2.3E-11 83.9 13.9 114 400-525 142-258 (262)
99 KOG0550 Molecular chaperone (D 98.6 5.5E-07 1.2E-11 89.4 11.7 133 399-534 203-339 (486)
100 PRK10049 pgaA outer membrane p 98.5 7.8E-07 1.7E-11 101.2 14.0 112 400-527 50-161 (765)
101 KOG2076 RNA polymerase III tra 98.5 2.1E-06 4.6E-11 92.9 16.3 116 398-513 138-272 (895)
102 PRK11447 cellulose synthase su 98.5 1.1E-06 2.4E-11 104.6 15.8 126 400-525 386-538 (1157)
103 COG3063 PilF Tfp pilus assembl 98.5 1.5E-06 3.2E-11 80.3 12.8 120 398-530 102-221 (250)
104 TIGR02917 PEP_TPR_lipo putativ 98.5 1.2E-06 2.6E-11 101.3 15.6 117 397-528 123-239 (899)
105 cd00189 TPR Tetratricopeptide 98.5 1.4E-06 3E-11 69.8 11.5 85 450-534 2-86 (100)
106 PLN03088 SGT1, suppressor of 98.5 9.2E-07 2E-11 91.1 12.3 84 451-534 5-88 (356)
107 PLN02789 farnesyltranstransfer 98.5 1.4E-06 3.1E-11 87.7 13.2 120 409-544 47-169 (320)
108 PRK15179 Vi polysaccharide bio 98.5 1.5E-06 3.2E-11 96.1 13.9 105 396-515 117-221 (694)
109 PRK11788 tetratricopeptide rep 98.5 2.8E-06 6E-11 88.9 15.2 66 450-515 182-247 (389)
110 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 4.9E-07 1.1E-11 92.3 9.0 65 448-512 75-142 (453)
111 PRK11788 tetratricopeptide rep 98.5 2.5E-06 5.5E-11 89.2 14.9 100 401-515 182-282 (389)
112 TIGR02917 PEP_TPR_lipo putativ 98.5 1.4E-06 3.1E-11 100.7 14.0 83 450-533 806-888 (899)
113 PF13432 TPR_16: Tetratricopep 98.4 2.3E-07 4.9E-12 70.3 4.5 64 404-482 2-65 (65)
114 PF13424 TPR_12: Tetratricopep 98.4 4.4E-07 9.6E-12 71.4 6.0 66 446-511 3-75 (78)
115 CHL00033 ycf3 photosystem I as 98.4 2.1E-06 4.5E-11 78.6 11.4 110 405-527 5-117 (168)
116 COG4785 NlpI Lipoprotein NlpI, 98.4 9E-07 2E-11 80.6 8.5 111 388-516 57-167 (297)
117 PRK10049 pgaA outer membrane p 98.4 3.1E-06 6.8E-11 96.3 14.0 108 400-522 360-467 (765)
118 KOG4162 Predicted calmodulin-b 98.4 1.6E-06 3.4E-11 92.4 10.4 103 399-516 684-788 (799)
119 PF06552 TOM20_plant: Plant sp 98.4 1.2E-06 2.6E-11 78.2 8.1 98 415-527 7-125 (186)
120 PF09976 TPR_21: Tetratricopep 98.4 4.6E-06 1E-10 74.3 11.8 94 402-508 51-144 (145)
121 KOG2003 TPR repeat-containing 98.4 7.4E-07 1.6E-11 89.0 7.1 115 400-529 491-605 (840)
122 KOG2002 TPR-containing nuclear 98.4 5.9E-06 1.3E-10 90.1 14.2 117 401-529 272-389 (1018)
123 TIGR02795 tol_pal_ybgF tol-pal 98.4 4.6E-06 9.9E-11 71.1 11.1 96 450-546 4-105 (119)
124 KOG1840 Kinesin light chain [C 98.3 8.5E-06 1.8E-10 86.1 15.0 146 396-549 238-399 (508)
125 COG4783 Putative Zn-dependent 98.3 7.8E-06 1.7E-10 83.3 13.7 125 399-538 306-430 (484)
126 KOG1310 WD40 repeat protein [G 98.3 1.1E-06 2.3E-11 89.6 7.4 113 393-520 368-483 (758)
127 PF14559 TPR_19: Tetratricopep 98.3 8E-07 1.7E-11 67.8 4.9 67 409-490 1-67 (68)
128 KOG1125 TPR repeat-containing 98.3 6.3E-06 1.4E-10 85.4 12.4 91 449-539 431-521 (579)
129 PRK02603 photosystem I assembl 98.3 6.5E-06 1.4E-10 75.7 11.3 82 447-528 34-118 (172)
130 KOG1128 Uncharacterized conser 98.3 2.2E-06 4.8E-11 90.8 9.0 122 399-535 485-606 (777)
131 KOG2002 TPR-containing nuclear 98.3 6.8E-06 1.5E-10 89.7 12.7 132 400-536 453-584 (1018)
132 PF13424 TPR_12: Tetratricopep 98.3 4.6E-06 9.9E-11 65.6 8.6 73 397-477 3-75 (78)
133 PRK14574 hmsH outer membrane p 98.3 1E-05 2.2E-10 91.2 14.3 149 399-549 34-201 (822)
134 COG4235 Cytochrome c biogenesi 98.3 7.9E-06 1.7E-10 79.0 11.5 113 398-525 155-270 (287)
135 COG5010 TadD Flp pilus assembl 98.3 7E-06 1.5E-10 77.4 10.7 85 453-537 105-189 (257)
136 TIGR00115 tig trigger factor. 98.2 3.5E-06 7.5E-11 88.7 9.0 84 168-262 146-231 (408)
137 PF13371 TPR_9: Tetratricopept 98.2 6E-06 1.3E-10 63.9 8.0 70 406-490 2-71 (73)
138 PF12895 Apc3: Anaphase-promot 98.1 4.6E-06 9.9E-11 66.7 5.6 76 461-537 2-79 (84)
139 PF12688 TPR_5: Tetratrico pep 98.1 4.1E-05 8.9E-10 65.2 11.5 98 401-510 3-103 (120)
140 PF14938 SNAP: Soluble NSF att 98.1 2.1E-05 4.6E-10 78.4 11.3 139 396-544 111-257 (282)
141 COG4783 Putative Zn-dependent 98.1 5.4E-05 1.2E-09 77.3 14.0 110 404-528 345-454 (484)
142 KOG1129 TPR repeat-containing 98.1 7E-06 1.5E-10 79.3 7.2 133 401-533 292-446 (478)
143 PF00515 TPR_1: Tetratricopept 98.1 5.7E-06 1.2E-10 53.5 4.4 34 482-515 1-34 (34)
144 PRK01490 tig trigger factor; P 98.1 1.9E-05 4.2E-10 83.8 10.6 84 168-262 157-242 (435)
145 PF03704 BTAD: Bacterial trans 98.1 0.00015 3.3E-09 64.5 14.8 110 401-510 8-124 (146)
146 cd05804 StaR_like StaR_like; a 98.1 7.8E-05 1.7E-09 76.9 14.7 116 401-516 45-182 (355)
147 PRK14720 transcript cleavage f 98.1 5.7E-05 1.2E-09 84.6 14.2 129 400-545 32-177 (906)
148 PRK14574 hmsH outer membrane p 98.0 5E-05 1.1E-09 85.8 13.1 113 406-534 109-221 (822)
149 PF09976 TPR_21: Tetratricopep 98.0 0.00018 3.9E-09 64.0 14.1 128 394-534 6-136 (145)
150 PRK10153 DNA-binding transcrip 98.0 7.8E-05 1.7E-09 80.2 13.8 118 399-517 339-488 (517)
151 PF13431 TPR_17: Tetratricopep 98.0 7.7E-06 1.7E-10 52.8 3.3 34 470-503 1-34 (34)
152 TIGR00540 hemY_coli hemY prote 98.0 0.00019 4.2E-09 75.7 16.0 124 395-533 80-204 (409)
153 COG2956 Predicted N-acetylgluc 98.0 0.00016 3.4E-09 70.2 13.5 144 386-533 97-266 (389)
154 KOG4648 Uncharacterized conser 98.0 1.5E-05 3.2E-10 77.5 6.6 63 453-515 102-164 (536)
155 KOG1840 Kinesin light chain [C 98.0 7.6E-05 1.7E-09 79.0 12.6 110 396-512 280-397 (508)
156 PF13429 TPR_15: Tetratricopep 98.0 4E-05 8.6E-10 76.5 10.0 122 402-536 113-234 (280)
157 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 9.9E-05 2.1E-09 75.7 12.8 73 394-478 70-142 (453)
158 PRK10747 putative protoheme IX 98.0 0.0002 4.4E-09 75.1 15.6 126 394-534 79-205 (398)
159 KOG1173 Anaphase-promoting com 97.9 6.3E-05 1.4E-09 77.9 11.2 117 404-535 385-508 (611)
160 KOG4151 Myosin assembly protei 97.9 2.9E-05 6.4E-10 83.6 9.0 124 391-525 45-170 (748)
161 PF07719 TPR_2: Tetratricopept 97.9 2.1E-05 4.6E-10 50.7 5.0 34 482-515 1-34 (34)
162 COG4105 ComL DNA uptake lipopr 97.9 0.00069 1.5E-08 64.4 16.8 130 399-540 34-177 (254)
163 TIGR00540 hemY_coli hemY prote 97.9 0.00014 3E-09 76.7 13.7 137 398-549 262-402 (409)
164 cd05804 StaR_like StaR_like; a 97.9 7.8E-05 1.7E-09 77.0 11.4 98 401-513 116-217 (355)
165 KOG1129 TPR repeat-containing 97.9 7.4E-05 1.6E-09 72.4 9.9 99 403-517 227-325 (478)
166 PF14853 Fis1_TPR_C: Fis1 C-te 97.9 9.1E-05 2E-09 52.8 7.5 48 483-530 2-49 (53)
167 KOG2076 RNA polymerase III tra 97.9 0.00024 5.3E-09 77.4 14.2 97 400-511 208-309 (895)
168 KOG1156 N-terminal acetyltrans 97.9 0.00011 2.5E-09 77.1 11.4 117 401-532 9-125 (700)
169 KOG1174 Anaphase-promoting com 97.8 0.00029 6.2E-09 70.5 13.1 125 401-525 234-377 (564)
170 PRK10803 tol-pal system protei 97.8 0.00021 4.5E-09 70.0 12.0 97 449-546 143-246 (263)
171 PF13428 TPR_14: Tetratricopep 97.8 4.9E-05 1.1E-09 52.3 5.4 41 483-523 2-42 (44)
172 PF12569 NARP1: NMDA receptor- 97.8 0.00016 3.5E-09 77.3 11.8 99 446-546 192-290 (517)
173 PF12688 TPR_5: Tetratrico pep 97.8 0.00027 5.8E-09 60.2 10.8 86 450-535 3-94 (120)
174 COG0544 Tig FKBP-type peptidyl 97.8 4.1E-05 9E-10 80.0 7.0 82 169-262 158-242 (441)
175 KOG1128 Uncharacterized conser 97.8 0.00013 2.8E-09 77.8 10.5 86 450-535 487-572 (777)
176 PRK11906 transcriptional regul 97.8 0.00019 4.1E-09 73.8 11.1 100 414-525 273-381 (458)
177 PF00515 TPR_1: Tetratricopept 97.8 3.2E-05 6.8E-10 49.9 3.6 33 449-481 2-34 (34)
178 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00011 2.4E-09 75.7 9.4 89 406-509 207-295 (395)
179 KOG4234 TPR repeat-containing 97.7 0.00031 6.8E-09 63.6 10.8 95 453-550 100-201 (271)
180 PF15015 NYD-SP12_N: Spermatog 97.7 0.00032 6.9E-09 70.2 11.6 111 399-509 176-289 (569)
181 PF12968 DUF3856: Domain of Un 97.7 0.00057 1.2E-08 56.5 11.1 108 401-511 11-129 (144)
182 KOG3060 Uncharacterized conser 97.7 0.00071 1.5E-08 63.7 13.1 138 402-539 89-248 (289)
183 KOG1130 Predicted G-alpha GTPa 97.7 4.7E-05 1E-09 75.8 5.3 111 394-513 190-306 (639)
184 KOG3060 Uncharacterized conser 97.7 0.00086 1.9E-08 63.1 13.0 90 398-502 153-245 (289)
185 KOG0545 Aryl-hydrocarbon recep 97.7 1.8E-05 3.8E-10 73.6 1.8 80 35-115 8-91 (329)
186 COG2956 Predicted N-acetylgluc 97.7 0.0013 2.8E-08 64.1 14.2 108 395-517 176-284 (389)
187 PF13428 TPR_14: Tetratricopep 97.6 0.0001 2.2E-09 50.7 4.9 42 450-491 3-44 (44)
188 KOG4642 Chaperone-dependent E3 97.6 9.1E-05 2E-09 68.8 5.7 76 453-528 15-90 (284)
189 PRK10747 putative protoheme IX 97.6 0.00091 2E-08 70.2 13.7 124 398-541 262-385 (398)
190 COG4235 Cytochrome c biogenesi 97.6 0.0013 2.9E-08 63.9 13.3 117 415-547 138-257 (287)
191 PF14938 SNAP: Soluble NSF att 97.6 0.00039 8.4E-09 69.3 10.0 106 396-511 32-144 (282)
192 PRK15331 chaperone protein Sic 97.6 0.00073 1.6E-08 60.1 10.1 84 451-534 40-123 (165)
193 PF13525 YfiO: Outer membrane 97.5 0.0033 7.2E-08 59.3 15.2 114 400-525 43-184 (203)
194 KOG1127 TPR repeat-containing 97.5 0.00052 1.1E-08 75.5 10.0 134 401-534 494-648 (1238)
195 PRK10941 hypothetical protein; 97.5 0.0012 2.7E-08 64.5 11.8 81 445-525 178-258 (269)
196 PF07719 TPR_2: Tetratricopept 97.5 0.00019 4.2E-09 46.1 4.3 33 449-481 2-34 (34)
197 KOG1586 Protein required for f 97.5 0.0031 6.6E-08 58.7 13.2 119 413-541 128-253 (288)
198 PF13181 TPR_8: Tetratricopept 97.5 0.00021 4.6E-09 45.9 4.2 33 483-515 2-34 (34)
199 COG4700 Uncharacterized protei 97.4 0.0044 9.5E-08 55.8 13.6 111 399-524 89-201 (251)
200 KOG4162 Predicted calmodulin-b 97.4 0.00094 2E-08 71.8 11.2 115 404-533 655-771 (799)
201 COG1729 Uncharacterized protei 97.4 0.0011 2.4E-08 63.6 10.6 95 451-546 144-244 (262)
202 KOG2003 TPR repeat-containing 97.4 0.0012 2.7E-08 66.5 11.2 131 395-525 554-703 (840)
203 PRK11906 transcriptional regul 97.4 0.00055 1.2E-08 70.5 8.7 88 414-516 319-406 (458)
204 PF04733 Coatomer_E: Coatomer 97.4 0.00072 1.6E-08 67.4 9.0 107 407-530 139-249 (290)
205 PRK14720 transcript cleavage f 97.4 0.00093 2E-08 75.1 10.6 110 400-512 66-179 (906)
206 KOG4555 TPR repeat-containing 97.4 0.0018 3.9E-08 54.7 9.5 63 453-515 48-110 (175)
207 PF13512 TPR_18: Tetratricopep 97.3 0.00096 2.1E-08 58.0 8.1 68 451-518 13-83 (142)
208 PF09295 ChAPs: ChAPs (Chs5p-A 97.3 0.0037 8E-08 64.6 13.7 108 411-536 181-288 (395)
209 PRK10866 outer membrane biogen 97.3 0.0011 2.5E-08 64.3 9.4 69 451-519 35-106 (243)
210 KOG3364 Membrane protein invol 97.2 0.0028 6E-08 53.9 9.2 84 447-530 31-119 (149)
211 KOG4507 Uncharacterized conser 97.2 0.00085 1.8E-08 69.8 7.3 106 406-525 614-719 (886)
212 KOG1174 Anaphase-promoting com 97.2 0.0021 4.6E-08 64.5 9.6 114 399-527 334-449 (564)
213 PF04733 Coatomer_E: Coatomer 97.2 0.00092 2E-08 66.6 7.3 94 413-521 181-275 (290)
214 PF14853 Fis1_TPR_C: Fis1 C-te 97.1 0.0016 3.5E-08 46.5 6.0 42 449-490 2-43 (53)
215 KOG1130 Predicted G-alpha GTPa 97.1 0.0026 5.7E-08 63.7 9.4 104 400-512 236-345 (639)
216 KOG4814 Uncharacterized conser 97.1 0.0041 8.9E-08 65.6 11.2 105 399-512 354-458 (872)
217 COG4785 NlpI Lipoprotein NlpI, 97.1 0.0014 3.1E-08 60.2 7.0 74 446-519 63-136 (297)
218 KOG1941 Acetylcholine receptor 97.1 0.0014 3.1E-08 64.5 7.2 125 398-522 5-162 (518)
219 KOG2796 Uncharacterized conser 97.1 0.016 3.6E-07 54.9 13.7 116 401-516 179-320 (366)
220 KOG1308 Hsp70-interacting prot 97.0 0.00033 7.1E-09 68.6 2.3 74 455-528 121-194 (377)
221 KOG0495 HAT repeat protein [RN 97.0 0.0059 1.3E-07 64.7 11.3 123 412-551 664-787 (913)
222 KOG3785 Uncharacterized conser 97.0 0.005 1.1E-07 60.6 9.8 97 408-522 31-127 (557)
223 KOG1156 N-terminal acetyltrans 97.0 0.0073 1.6E-07 64.0 11.6 105 402-521 44-148 (700)
224 KOG0376 Serine-threonine phosp 96.9 0.0008 1.7E-08 69.0 4.1 63 453-515 9-71 (476)
225 KOG0551 Hsp90 co-chaperone CNS 96.9 0.0054 1.2E-07 60.0 9.4 72 451-524 84-159 (390)
226 KOG0495 HAT repeat protein [RN 96.9 0.014 3.1E-07 61.9 13.0 127 404-530 589-733 (913)
227 KOG3785 Uncharacterized conser 96.8 0.029 6.3E-07 55.4 13.8 72 451-522 154-225 (557)
228 PF13174 TPR_6: Tetratricopept 96.8 0.002 4.3E-08 40.8 4.1 33 483-515 1-33 (33)
229 COG2976 Uncharacterized protei 96.8 0.027 5.8E-07 51.4 12.4 102 401-515 91-192 (207)
230 PF13181 TPR_8: Tetratricopept 96.8 0.0016 3.5E-08 41.7 3.4 33 449-481 2-34 (34)
231 KOG4340 Uncharacterized conser 96.8 0.0029 6.3E-08 60.9 6.4 94 398-506 143-265 (459)
232 PF12569 NARP1: NMDA receptor- 96.8 0.012 2.6E-07 63.2 11.6 78 449-526 5-82 (517)
233 PF06552 TOM20_plant: Plant sp 96.7 0.011 2.3E-07 53.3 9.0 67 464-530 7-83 (186)
234 PF10300 DUF3808: Protein of u 96.6 0.014 3E-07 62.5 10.9 101 401-513 269-378 (468)
235 KOG1127 TPR repeat-containing 96.6 0.035 7.6E-07 61.7 13.7 99 402-515 5-107 (1238)
236 KOG3824 Huntingtin interacting 96.6 0.012 2.6E-07 56.9 9.0 74 451-524 119-192 (472)
237 smart00028 TPR Tetratricopepti 96.6 0.0035 7.5E-08 38.7 3.9 32 483-514 2-33 (34)
238 KOG3081 Vesicle coat complex C 96.5 0.032 7E-07 53.2 11.2 129 403-531 112-256 (299)
239 COG4105 ComL DNA uptake lipopr 96.4 0.019 4.2E-07 54.7 9.3 71 448-518 34-107 (254)
240 PF13176 TPR_7: Tetratricopept 96.4 0.0058 1.2E-07 39.8 4.1 27 484-510 1-27 (36)
241 COG3071 HemY Uncharacterized e 96.4 0.15 3.3E-06 51.4 15.9 126 394-534 79-205 (400)
242 PF09986 DUF2225: Uncharacteri 96.2 0.1 2.2E-06 49.4 13.3 100 408-515 86-198 (214)
243 KOG1941 Acetylcholine receptor 96.2 0.01 2.2E-07 58.7 6.5 102 402-512 125-236 (518)
244 PF13174 TPR_6: Tetratricopept 96.1 0.0063 1.4E-07 38.4 3.1 32 450-481 2-33 (33)
245 PF13176 TPR_7: Tetratricopept 96.1 0.0076 1.7E-07 39.3 3.3 28 450-477 1-28 (36)
246 PF13431 TPR_17: Tetratricopep 96.0 0.0027 5.8E-08 40.8 0.9 33 421-468 1-33 (34)
247 PF08631 SPO22: Meiosis protei 96.0 0.37 8.1E-06 47.8 16.6 124 389-513 25-152 (278)
248 KOG2376 Signal recognition par 96.0 0.055 1.2E-06 57.0 10.7 114 400-516 13-144 (652)
249 COG3118 Thioredoxin domain-con 95.9 0.2 4.3E-06 48.9 13.5 116 400-530 135-286 (304)
250 COG0457 NrfG FOG: TPR repeat [ 95.9 0.21 4.6E-06 46.2 13.9 57 458-514 177-234 (291)
251 KOG2396 HAT (Half-A-TPR) repea 95.9 0.11 2.3E-06 54.0 12.0 99 417-530 89-188 (568)
252 KOG1915 Cell cycle control pro 95.8 0.12 2.7E-06 53.1 12.2 89 411-510 378-499 (677)
253 PF14561 TPR_20: Tetratricopep 95.8 0.073 1.6E-06 42.8 8.7 68 467-534 7-76 (90)
254 KOG1586 Protein required for f 95.7 0.12 2.7E-06 48.4 10.8 110 398-517 73-189 (288)
255 KOG2376 Signal recognition par 95.7 0.11 2.3E-06 55.0 11.5 68 403-488 83-150 (652)
256 KOG1585 Protein required for f 95.7 0.12 2.6E-06 48.8 10.6 128 404-542 115-248 (308)
257 smart00028 TPR Tetratricopepti 95.7 0.017 3.6E-07 35.4 3.7 32 450-481 3-34 (34)
258 KOG2471 TPR repeat-containing 95.7 0.036 7.8E-07 57.0 7.7 119 401-525 242-378 (696)
259 COG0457 NrfG FOG: TPR repeat [ 95.6 0.12 2.7E-06 47.8 11.1 66 449-514 203-268 (291)
260 PF10602 RPN7: 26S proteasome 95.6 0.19 4.2E-06 46.1 11.9 103 397-511 34-142 (177)
261 COG4976 Predicted methyltransf 95.5 0.021 4.6E-07 53.2 4.9 61 457-517 4-64 (287)
262 COG2912 Uncharacterized conser 95.5 0.12 2.6E-06 49.9 10.1 76 446-521 179-254 (269)
263 PRK10153 DNA-binding transcrip 95.4 0.16 3.4E-06 55.0 12.2 119 417-536 338-473 (517)
264 PF05843 Suf: Suppressor of fo 95.3 0.17 3.6E-06 50.4 11.0 98 404-516 6-104 (280)
265 COG3629 DnrI DNA-binding trans 95.2 0.09 1.9E-06 51.5 8.6 74 438-511 143-216 (280)
266 PRK04841 transcriptional regul 95.2 0.38 8.3E-06 56.3 15.6 102 403-513 495-604 (903)
267 PF06957 COPI_C: Coatomer (COP 95.2 0.11 2.3E-06 53.9 9.4 123 396-518 201-336 (422)
268 KOG2053 Mitochondrial inherita 95.2 0.26 5.5E-06 54.7 12.6 111 408-534 18-128 (932)
269 KOG3824 Huntingtin interacting 95.1 0.043 9.3E-07 53.3 5.7 83 395-492 112-194 (472)
270 KOG4340 Uncharacterized conser 95.0 0.17 3.6E-06 49.2 9.5 86 409-509 20-105 (459)
271 KOG1585 Protein required for f 94.9 0.63 1.4E-05 44.1 12.8 117 400-525 32-156 (308)
272 PF10952 DUF2753: Protein of u 94.9 0.24 5.2E-06 41.5 8.8 81 401-481 3-87 (140)
273 PF04781 DUF627: Protein of un 94.9 0.2 4.4E-06 41.4 8.4 103 405-512 2-108 (111)
274 COG3947 Response regulator con 94.8 0.29 6.4E-06 47.4 10.6 75 434-508 265-339 (361)
275 PLN03081 pentatricopeptide (PP 94.8 0.27 5.8E-06 55.8 12.3 62 450-511 496-557 (697)
276 COG4700 Uncharacterized protei 94.7 0.46 1E-05 43.1 10.8 75 451-525 92-169 (251)
277 PF04184 ST7: ST7 protein; In 94.7 0.35 7.7E-06 50.4 11.5 126 391-516 183-330 (539)
278 PF10579 Rapsyn_N: Rapsyn N-te 94.6 0.24 5.2E-06 38.2 7.5 69 397-477 4-72 (80)
279 KOG2796 Uncharacterized conser 94.5 0.72 1.6E-05 44.2 12.0 90 445-534 209-304 (366)
280 KOG4814 Uncharacterized conser 94.3 0.34 7.3E-06 51.8 10.5 77 447-523 353-435 (872)
281 PF02259 FAT: FAT domain; Int 94.3 0.8 1.7E-05 46.9 13.5 115 401-515 186-342 (352)
282 PRK04841 transcriptional regul 94.2 0.34 7.3E-06 56.8 11.9 99 403-511 456-560 (903)
283 KOG3081 Vesicle coat complex C 94.2 0.51 1.1E-05 45.3 10.5 91 413-518 187-278 (299)
284 PLN03081 pentatricopeptide (PP 94.2 0.59 1.3E-05 53.1 13.3 142 400-544 392-555 (697)
285 KOG1915 Cell cycle control pro 94.1 1.1 2.4E-05 46.5 13.3 100 402-516 76-175 (677)
286 PF13374 TPR_10: Tetratricopep 93.8 0.097 2.1E-06 34.8 3.8 29 449-477 3-31 (42)
287 PLN03218 maturation of RBCL 1; 93.7 1.7 3.7E-05 51.3 15.9 65 450-514 581-648 (1060)
288 PF03704 BTAD: Bacterial trans 93.7 1 2.2E-05 39.6 11.3 81 454-534 12-114 (146)
289 COG3071 HemY Uncharacterized e 93.6 1.1 2.5E-05 45.3 12.3 109 401-528 265-373 (400)
290 PF07079 DUF1347: Protein of u 93.6 1.2 2.5E-05 46.0 12.4 131 395-529 375-543 (549)
291 KOG4507 Uncharacterized conser 93.4 0.43 9.4E-06 50.5 9.3 129 402-543 215-347 (886)
292 KOG3364 Membrane protein invol 93.4 0.29 6.3E-06 41.9 6.6 44 447-490 70-113 (149)
293 PF12862 Apc5: Anaphase-promot 93.2 0.52 1.1E-05 38.2 7.8 64 408-477 7-70 (94)
294 PLN03218 maturation of RBCL 1; 93.2 2.6 5.7E-05 49.8 16.3 63 449-512 543-609 (1060)
295 PF04184 ST7: ST7 protein; In 93.1 0.84 1.8E-05 47.8 10.8 55 482-536 259-315 (539)
296 PF13374 TPR_10: Tetratricopep 93.0 0.22 4.9E-06 33.0 4.6 30 482-511 2-31 (42)
297 KOG2610 Uncharacterized conser 92.8 2 4.3E-05 42.7 12.2 108 400-507 104-234 (491)
298 PF12862 Apc5: Anaphase-promot 92.7 0.48 1E-05 38.4 6.9 59 457-515 7-74 (94)
299 PLN03077 Protein ECB2; Provisi 92.6 1.4 3.1E-05 51.3 13.4 134 401-536 556-711 (857)
300 PLN03077 Protein ECB2; Provisi 92.6 1.8 3.8E-05 50.5 14.1 60 451-510 660-719 (857)
301 KOG1070 rRNA processing protei 92.3 1.8 3.9E-05 50.6 12.9 125 401-525 1460-1609(1710)
302 KOG2471 TPR repeat-containing 92.3 0.13 2.9E-06 53.1 3.7 97 399-495 283-382 (696)
303 PF08631 SPO22: Meiosis protei 92.1 4.6 0.0001 40.0 14.5 104 409-519 3-124 (278)
304 PF10300 DUF3808: Protein of u 92.0 1.3 2.9E-05 47.4 11.1 75 450-524 269-347 (468)
305 KOG0292 Vesicle coat complex C 91.6 1.1 2.4E-05 49.7 9.9 125 396-520 988-1122(1202)
306 PRK10941 hypothetical protein; 91.5 1.3 2.8E-05 43.5 9.6 77 400-491 182-258 (269)
307 PF10516 SHNi-TPR: SHNi-TPR; 91.3 0.36 7.8E-06 31.8 3.7 30 483-512 2-31 (38)
308 COG5191 Uncharacterized conser 91.2 0.41 8.8E-06 46.8 5.5 76 450-525 109-185 (435)
309 PF09613 HrpB1_HrpK: Bacterial 91.2 2.5 5.5E-05 37.7 10.0 80 450-529 12-91 (160)
310 COG4976 Predicted methyltransf 91.1 0.28 6.1E-06 45.9 4.2 59 408-481 4-62 (287)
311 KOG0686 COP9 signalosome, subu 90.8 1.1 2.4E-05 45.5 8.3 98 400-509 151-256 (466)
312 COG2976 Uncharacterized protei 90.7 9.9 0.00022 35.1 13.5 97 412-508 47-152 (207)
313 PF05843 Suf: Suppressor of fo 90.5 3 6.6E-05 41.4 11.4 104 403-521 39-146 (280)
314 PF10602 RPN7: 26S proteasome 90.5 7.8 0.00017 35.5 13.2 77 448-524 36-117 (177)
315 PRK13184 pknD serine/threonine 90.1 3 6.6E-05 48.1 12.2 111 402-525 478-595 (932)
316 PF07720 TPR_3: Tetratricopept 89.9 1.1 2.3E-05 29.1 5.0 33 483-515 2-36 (36)
317 cd02681 MIT_calpain7_1 MIT: do 89.7 2.6 5.6E-05 32.6 7.8 35 397-431 4-38 (76)
318 KOG1070 rRNA processing protei 89.3 6.6 0.00014 46.3 13.7 110 401-525 1532-1643(1710)
319 KOG2053 Mitochondrial inherita 88.9 1.6 3.6E-05 48.6 8.4 97 404-516 48-144 (932)
320 PF02259 FAT: FAT domain; Int 88.8 8.4 0.00018 39.2 13.6 121 397-528 144-304 (352)
321 KOG2300 Uncharacterized conser 88.5 12 0.00027 39.2 13.7 99 398-512 366-475 (629)
322 KOG1550 Extracellular protein 88.1 5.9 0.00013 43.5 12.4 92 402-512 291-394 (552)
323 KOG2610 Uncharacterized conser 88.1 2.7 5.9E-05 41.8 8.5 89 413-516 189-283 (491)
324 KOG3617 WD40 and TPR repeat-co 87.9 7.4 0.00016 43.3 12.4 114 398-511 857-996 (1416)
325 cd02683 MIT_1 MIT: domain cont 87.8 3 6.6E-05 32.3 7.1 35 397-431 4-38 (77)
326 PF07721 TPR_4: Tetratricopept 87.6 0.78 1.7E-05 27.2 2.9 24 483-506 2-25 (26)
327 PF15015 NYD-SP12_N: Spermatog 87.4 2.9 6.4E-05 42.8 8.5 52 487-538 233-284 (569)
328 TIGR03504 FimV_Cterm FimV C-te 87.4 2.1 4.5E-05 29.2 5.2 25 486-510 3-27 (44)
329 PF09613 HrpB1_HrpK: Bacterial 87.4 21 0.00046 31.9 14.1 112 399-527 10-121 (160)
330 PF09986 DUF2225: Uncharacteri 87.2 3.4 7.3E-05 39.2 8.6 85 397-490 123-208 (214)
331 PF04910 Tcf25: Transcriptiona 86.8 7 0.00015 40.3 11.3 80 400-480 41-135 (360)
332 KOG2114 Vacuolar assembly/sort 86.6 13 0.00028 41.6 13.3 34 398-431 367-400 (933)
333 cd02682 MIT_AAA_Arch MIT: doma 86.4 6.2 0.00014 30.4 7.9 36 397-432 4-39 (75)
334 cd02677 MIT_SNX15 MIT: domain 86.0 5 0.00011 31.0 7.4 60 396-455 3-63 (75)
335 PF11817 Foie-gras_1: Foie gra 85.5 4.9 0.00011 39.0 9.1 65 402-475 181-245 (247)
336 cd02684 MIT_2 MIT: domain cont 85.4 4.3 9.4E-05 31.3 6.8 36 396-431 3-38 (75)
337 PF04212 MIT: MIT (microtubule 85.4 4.1 8.8E-05 30.7 6.6 35 397-431 3-37 (69)
338 cd02678 MIT_VPS4 MIT: domain c 85.3 5.9 0.00013 30.5 7.6 36 396-431 3-38 (75)
339 PHA02537 M terminase endonucle 85.1 11 0.00023 36.1 10.6 118 410-531 94-226 (230)
340 PF10345 Cohesin_load: Cohesin 85.0 20 0.00044 39.9 14.7 116 400-515 302-445 (608)
341 KOG2422 Uncharacterized conser 84.5 28 0.00061 37.4 14.2 115 326-482 256-377 (665)
342 cd02679 MIT_spastin MIT: domai 84.4 7.8 0.00017 30.2 7.8 66 396-461 5-76 (79)
343 PF12968 DUF3856: Domain of Un 84.3 10 0.00022 32.0 8.7 74 400-477 56-129 (144)
344 COG0790 FOG: TPR repeat, SEL1 84.1 23 0.00049 35.1 13.5 105 401-523 111-230 (292)
345 KOG2300 Uncharacterized conser 84.1 14 0.0003 38.8 11.5 101 398-506 45-151 (629)
346 KOG1497 COP9 signalosome, subu 84.0 27 0.00058 34.8 12.8 90 444-534 99-198 (399)
347 COG3898 Uncharacterized membra 83.9 20 0.00043 36.7 12.3 77 447-525 229-305 (531)
348 PF10373 EST1_DNA_bind: Est1 D 83.6 3.6 7.9E-05 40.4 7.4 62 467-528 1-62 (278)
349 cd02656 MIT MIT: domain contai 83.0 8.4 0.00018 29.5 7.7 35 397-431 4-38 (75)
350 COG4455 ImpE Protein of avirul 82.7 11 0.00025 35.3 9.4 70 456-525 9-78 (273)
351 PF10255 Paf67: RNA polymerase 82.5 3.8 8.3E-05 42.5 7.0 134 406-546 129-266 (404)
352 PF14863 Alkyl_sulf_dimr: Alky 82.5 3.1 6.8E-05 36.4 5.5 47 451-497 73-119 (141)
353 PF13281 DUF4071: Domain of un 82.4 39 0.00085 34.8 14.2 39 487-525 310-348 (374)
354 PF10345 Cohesin_load: Cohesin 81.9 38 0.00083 37.7 15.3 122 387-521 50-180 (608)
355 TIGR02561 HrpB1_HrpK type III 81.8 14 0.00029 32.6 9.1 78 452-529 14-91 (153)
356 cd02682 MIT_AAA_Arch MIT: doma 81.7 17 0.00037 28.0 8.5 19 499-517 30-48 (75)
357 PF10516 SHNi-TPR: SHNi-TPR; 81.5 2.3 5E-05 27.9 3.3 28 450-477 3-30 (38)
358 PF13281 DUF4071: Domain of un 81.2 46 0.001 34.3 14.2 99 448-546 141-255 (374)
359 PF14561 TPR_20: Tetratricopep 80.9 7.4 0.00016 31.2 6.8 48 419-481 8-55 (90)
360 KOG1310 WD40 repeat protein [G 80.9 5 0.00011 42.3 7.1 74 462-535 388-464 (758)
361 PF04910 Tcf25: Transcriptiona 80.6 12 0.00026 38.5 10.0 101 413-516 8-138 (360)
362 KOG1550 Extracellular protein 80.4 24 0.00052 38.8 12.8 113 399-525 244-369 (552)
363 PF14863 Alkyl_sulf_dimr: Alky 80.3 9.6 0.00021 33.4 7.8 53 480-532 68-120 (141)
364 smart00745 MIT Microtubule Int 79.8 18 0.00038 27.8 8.5 36 396-431 5-40 (77)
365 COG3118 Thioredoxin domain-con 79.6 8.2 0.00018 37.9 7.8 54 454-507 140-193 (304)
366 PF11817 Foie-gras_1: Foie gra 79.3 19 0.00042 34.9 10.5 83 417-508 156-244 (247)
367 PF07721 TPR_4: Tetratricopept 78.8 2.8 6E-05 24.8 2.8 23 450-472 3-25 (26)
368 PF08424 NRDE-2: NRDE-2, neces 78.7 57 0.0012 33.0 14.1 88 464-551 47-136 (321)
369 KOG3617 WD40 and TPR repeat-co 77.3 14 0.0003 41.3 9.3 104 407-510 808-940 (1416)
370 PF10579 Rapsyn_N: Rapsyn N-te 77.2 18 0.0004 28.0 7.5 59 453-511 11-72 (80)
371 cd02680 MIT_calpain7_2 MIT: do 77.1 4.7 0.0001 31.0 4.3 35 397-431 4-38 (75)
372 COG3914 Spy Predicted O-linked 77.0 26 0.00056 37.8 11.0 75 449-523 102-183 (620)
373 COG2912 Uncharacterized conser 76.6 9.8 0.00021 37.0 7.3 71 406-491 188-258 (269)
374 KOG2581 26S proteasome regulat 76.5 10 0.00022 38.9 7.5 69 449-517 210-282 (493)
375 KOG2047 mRNA splicing factor [ 75.9 42 0.00091 36.7 12.2 116 396-512 422-541 (835)
376 PF10255 Paf67: RNA polymerase 75.8 4.3 9.4E-05 42.1 5.0 58 452-510 126-192 (404)
377 PF10373 EST1_DNA_bind: Est1 D 74.6 8.1 0.00018 37.9 6.6 62 418-494 1-62 (278)
378 COG3914 Spy Predicted O-linked 74.5 31 0.00067 37.2 10.8 69 454-522 73-142 (620)
379 COG0790 FOG: TPR repeat, SEL1 73.9 35 0.00076 33.8 11.1 80 416-515 172-270 (292)
380 KOG0985 Vesicle coat protein c 73.5 25 0.00053 40.5 10.1 107 401-530 1196-1327(1666)
381 KOG0530 Protein farnesyltransf 73.4 61 0.0013 31.5 11.5 106 411-531 55-162 (318)
382 PF09205 DUF1955: Domain of un 73.2 37 0.0008 29.4 8.9 61 451-511 88-149 (161)
383 COG4941 Predicted RNA polymera 71.6 38 0.00083 34.0 10.0 75 451-525 332-408 (415)
384 COG2909 MalT ATP-dependent tra 71.5 1.9E+02 0.0042 33.1 16.4 105 402-512 418-527 (894)
385 PF09670 Cas_Cas02710: CRISPR- 71.4 56 0.0012 34.0 12.0 66 398-476 130-197 (379)
386 KOG0739 AAA+-type ATPase [Post 71.4 16 0.00034 36.1 7.3 37 395-431 6-42 (439)
387 PF07720 TPR_3: Tetratricopept 70.2 11 0.00025 24.3 4.2 31 451-481 4-36 (36)
388 TIGR03504 FimV_Cterm FimV C-te 70.0 6.8 0.00015 26.7 3.3 27 451-477 2-28 (44)
389 KOG1839 Uncharacterized protei 69.9 49 0.0011 39.2 11.9 109 397-512 971-1087(1236)
390 KOG2047 mRNA splicing factor [ 69.3 1.4E+02 0.003 32.9 14.2 114 402-527 390-522 (835)
391 COG5091 SGT1 Suppressor of G2 68.6 15 0.00033 35.4 6.4 124 407-536 3-132 (368)
392 KOG3783 Uncharacterized conser 67.5 44 0.00096 35.7 10.1 65 451-515 452-524 (546)
393 KOG3540 Beta amyloid precursor 67.3 1.4E+02 0.003 31.5 13.2 107 402-516 270-382 (615)
394 KOG0529 Protein geranylgeranyl 67.0 1.3E+02 0.0028 31.3 12.9 74 459-532 86-161 (421)
395 PF11846 DUF3366: Domain of un 66.1 31 0.00066 31.9 8.1 52 463-515 126-177 (193)
396 KOG1464 COP9 signalosome, subu 66.0 19 0.0004 35.0 6.4 51 460-510 39-93 (440)
397 PF04781 DUF627: Protein of un 65.7 79 0.0017 26.4 10.0 68 454-523 2-83 (111)
398 PRK15180 Vi polysaccharide bio 64.9 37 0.00081 35.7 8.8 90 407-511 297-386 (831)
399 KOG1839 Uncharacterized protei 64.6 32 0.0007 40.6 9.2 107 397-511 930-1044(1236)
400 smart00745 MIT Microtubule Int 64.4 26 0.00057 26.8 6.2 17 499-515 32-48 (77)
401 KOG1463 26S proteasome regulat 63.3 72 0.0016 32.2 10.1 117 400-526 210-328 (411)
402 KOG0530 Protein farnesyltransf 63.3 45 0.00097 32.4 8.4 86 461-546 56-142 (318)
403 cd02683 MIT_1 MIT: domain cont 62.7 28 0.0006 27.0 5.9 19 499-517 30-48 (77)
404 PF11207 DUF2989: Protein of u 62.6 27 0.0006 32.5 6.7 33 481-514 140-172 (203)
405 KOG0529 Protein geranylgeranyl 61.5 62 0.0013 33.5 9.6 99 413-526 89-193 (421)
406 PF04053 Coatomer_WDAD: Coatom 61.4 32 0.0007 36.5 8.0 25 401-425 349-373 (443)
407 PF04212 MIT: MIT (microtubule 60.3 69 0.0015 23.9 8.2 21 454-474 11-31 (69)
408 PF08424 NRDE-2: NRDE-2, neces 60.3 64 0.0014 32.7 9.8 77 469-546 6-94 (321)
409 PF10952 DUF2753: Protein of u 59.4 32 0.0007 29.2 5.9 64 451-514 4-86 (140)
410 PF12739 TRAPPC-Trs85: ER-Golg 59.4 86 0.0019 33.0 10.9 103 400-511 209-329 (414)
411 smart00386 HAT HAT (Half-A-TPR 58.5 30 0.00064 20.7 4.6 28 496-523 1-28 (33)
412 KOG0889 Histone acetyltransfer 58.3 1.2E+02 0.0027 40.0 13.0 90 445-535 2809-2906(3550)
413 PF00244 14-3-3: 14-3-3 protei 58.2 34 0.00074 32.9 7.0 55 415-476 142-197 (236)
414 COG3947 Response regulator con 57.5 32 0.0007 33.9 6.5 50 482-531 279-328 (361)
415 COG5159 RPN6 26S proteasome re 57.3 1.1E+02 0.0024 30.2 9.9 64 403-473 7-70 (421)
416 KOG0276 Vesicle coat complex C 56.7 1.3E+02 0.0027 33.0 11.1 28 400-427 667-694 (794)
417 COG4649 Uncharacterized protei 56.2 1.6E+02 0.0035 26.9 12.1 98 402-510 97-195 (221)
418 PF07163 Pex26: Pex26 protein; 55.4 1.9E+02 0.0041 28.5 11.2 110 405-517 41-152 (309)
419 PF07079 DUF1347: Protein of u 55.0 1.1E+02 0.0023 32.3 10.0 100 402-511 9-108 (549)
420 PF15469 Sec5: Exocyst complex 54.8 56 0.0012 29.9 7.6 25 408-432 95-119 (182)
421 COG1747 Uncharacterized N-term 54.6 1.8E+02 0.0039 31.2 11.6 55 461-515 218-292 (711)
422 COG3898 Uncharacterized membra 54.1 2.7E+02 0.0059 28.9 12.7 50 460-509 166-215 (531)
423 PF08238 Sel1: Sel1 repeat; I 54.1 29 0.00062 22.1 4.1 30 482-511 1-37 (39)
424 PF12925 APP_E2: E2 domain of 54.1 1.8E+02 0.004 26.9 10.8 91 441-534 91-183 (193)
425 PF12854 PPR_1: PPR repeat 54.0 34 0.00073 21.6 4.2 27 481-507 6-32 (34)
426 KOG3616 Selective LIM binding 53.7 89 0.0019 34.8 9.6 47 461-508 745-791 (1636)
427 PRK15180 Vi polysaccharide bio 53.6 27 0.00059 36.7 5.6 92 409-515 333-424 (831)
428 KOG4459 Membrane-associated pr 52.8 75 0.0016 33.3 8.6 122 402-526 34-177 (471)
429 TIGR02710 CRISPR-associated pr 52.7 2E+02 0.0044 29.8 11.8 63 400-472 131-195 (380)
430 cd02656 MIT MIT: domain contai 52.7 41 0.00088 25.7 5.4 16 499-514 30-45 (75)
431 smart00671 SEL1 Sel1-like repe 52.1 31 0.00067 21.4 4.0 29 483-511 2-34 (36)
432 KOG2041 WD40 repeat protein [G 51.9 52 0.0011 36.3 7.5 49 453-505 827-875 (1189)
433 PF01239 PPTA: Protein prenylt 51.3 40 0.00086 20.6 4.2 28 467-494 2-29 (31)
434 PRK13184 pknD serine/threonine 51.2 1E+02 0.0022 36.0 10.4 66 451-518 555-627 (932)
435 KOG1464 COP9 signalosome, subu 49.9 1.2E+02 0.0025 29.7 8.8 144 404-567 150-304 (440)
436 PF12652 CotJB: CotJB protein; 48.2 65 0.0014 25.0 5.7 57 491-551 4-60 (78)
437 KOG2581 26S proteasome regulat 47.9 2.1E+02 0.0046 29.7 10.7 113 397-521 245-359 (493)
438 KOG0276 Vesicle coat complex C 47.3 74 0.0016 34.6 7.7 53 454-511 643-695 (794)
439 KOG4563 Cell cycle-regulated h 46.8 64 0.0014 32.8 6.8 40 394-433 36-75 (400)
440 KOG2422 Uncharacterized conser 46.2 1.5E+02 0.0033 32.1 9.8 113 404-519 240-380 (665)
441 KOG3783 Uncharacterized conser 45.7 1.5E+02 0.0033 31.9 9.7 94 402-509 270-373 (546)
442 TIGR02561 HrpB1_HrpK type III 45.5 2.2E+02 0.0047 25.3 13.8 107 402-525 13-119 (153)
443 COG4455 ImpE Protein of avirul 45.5 2.4E+02 0.0053 26.8 9.9 62 406-482 8-69 (273)
444 cd02678 MIT_VPS4 MIT: domain c 44.9 1.4E+02 0.003 22.8 8.0 15 501-515 32-46 (75)
445 KOG2561 Adaptor protein NUB1, 44.0 2.3E+02 0.005 29.7 10.3 112 395-510 159-295 (568)
446 cd02677 MIT_SNX15 MIT: domain 41.8 1E+02 0.0022 23.7 5.9 14 465-478 4-17 (75)
447 cd02681 MIT_calpain7_1 MIT: do 41.7 94 0.002 24.0 5.7 19 455-473 13-31 (76)
448 PF11207 DUF2989: Protein of u 41.7 53 0.0011 30.6 5.1 58 399-468 141-198 (203)
449 COG4649 Uncharacterized protei 41.1 65 0.0014 29.4 5.3 50 445-495 164-213 (221)
450 KOG1914 mRNA cleavage and poly 40.8 1.6E+02 0.0034 31.8 8.8 105 441-547 13-121 (656)
451 COG2909 MalT ATP-dependent tra 40.5 2.5E+02 0.0055 32.2 10.8 85 402-496 461-551 (894)
452 cd02680 MIT_calpain7_2 MIT: do 39.7 49 0.0011 25.5 3.8 18 494-511 18-35 (75)
453 PF01535 PPR: PPR repeat; Int 38.9 44 0.00095 19.7 3.0 24 451-474 3-26 (31)
454 PF04053 Coatomer_WDAD: Coatom 38.1 3.3E+02 0.0072 29.0 11.2 46 459-509 329-374 (443)
455 COG3014 Uncharacterized protei 37.9 2.9E+02 0.0064 28.0 9.7 127 403-530 62-241 (449)
456 KOG0985 Vesicle coat protein c 37.9 5.9E+02 0.013 30.1 13.0 62 448-514 1104-1165(1666)
457 COG1747 Uncharacterized N-term 37.7 2.5E+02 0.0054 30.2 9.6 95 451-549 69-163 (711)
458 COG3014 Uncharacterized protei 36.8 2E+02 0.0043 29.2 8.4 123 396-521 122-252 (449)
459 COG3629 DnrI DNA-binding trans 36.4 1.3E+02 0.0027 29.8 7.1 48 480-527 151-198 (280)
460 smart00101 14_3_3 14-3-3 homol 35.8 1.3E+02 0.0029 29.1 7.1 55 415-476 144-199 (244)
461 PF04190 DUF410: Protein of un 35.4 3.6E+02 0.0079 26.3 10.3 103 400-506 11-114 (260)
462 KOG1463 26S proteasome regulat 35.1 5.1E+02 0.011 26.4 14.0 70 443-512 123-198 (411)
463 cd02684 MIT_2 MIT: domain cont 35.0 1.6E+02 0.0035 22.5 6.2 16 500-515 31-46 (75)
464 KOG0890 Protein kinase of the 34.7 6.6E+02 0.014 32.5 13.8 67 444-512 1666-1732(2382)
465 KOG0546 HSP90 co-chaperone CPR 34.0 29 0.00063 35.1 2.3 75 405-494 281-355 (372)
466 TIGR00756 PPR pentatricopeptid 33.9 85 0.0018 18.8 3.9 26 485-510 3-28 (35)
467 KOG3807 Predicted membrane pro 33.4 5.3E+02 0.011 26.2 12.7 27 487-513 280-306 (556)
468 PHA02122 hypothetical protein 33.1 65 0.0014 22.9 3.2 21 54-75 39-59 (65)
469 PF02064 MAS20: MAS20 protein 32.8 1E+02 0.0022 26.3 5.0 40 392-431 56-95 (121)
470 PF04010 DUF357: Protein of un 32.6 1.5E+02 0.0032 22.9 5.5 39 391-429 27-65 (75)
471 KOG2582 COP9 signalosome, subu 32.5 59 0.0013 33.0 4.1 101 400-511 103-212 (422)
472 PF07219 HemY_N: HemY protein 32.4 2.8E+02 0.0062 22.8 8.9 47 451-497 62-108 (108)
473 COG5191 Uncharacterized conser 31.9 1E+02 0.0022 30.8 5.5 65 408-486 116-180 (435)
474 PF09797 NatB_MDM20: N-acetylt 31.8 1.8E+02 0.0039 29.9 7.9 45 462-506 197-241 (365)
475 PF13041 PPR_2: PPR repeat fam 31.0 1.7E+02 0.0037 19.8 6.0 27 484-510 5-31 (50)
476 KOG0739 AAA+-type ATPase [Post 30.6 5.7E+02 0.012 25.7 10.6 57 464-530 7-66 (439)
477 KOG1538 Uncharacterized conser 30.6 1.4E+02 0.003 32.9 6.7 53 454-509 779-831 (1081)
478 PF13812 PPR_3: Pentatricopept 29.7 1E+02 0.0022 18.5 3.7 25 451-475 4-28 (34)
479 KOG4014 Uncharacterized conser 29.3 4.6E+02 0.01 24.2 10.6 81 413-512 87-198 (248)
480 PF10938 YfdX: YfdX protein; 29.0 2E+02 0.0043 25.7 6.6 109 400-510 3-145 (155)
481 COG5159 RPN6 26S proteasome re 28.3 5.5E+02 0.012 25.5 9.6 72 441-512 118-195 (421)
482 KOG4563 Cell cycle-regulated h 27.7 84 0.0018 32.0 4.2 55 451-505 44-106 (400)
483 cd02679 MIT_spastin MIT: domai 27.5 1.1E+02 0.0024 23.8 4.1 17 463-479 4-20 (79)
484 PF08969 USP8_dimer: USP8 dime 27.0 1.9E+02 0.0041 24.2 5.8 42 388-429 27-68 (115)
485 PF10475 DUF2450: Protein of u 26.8 4.4E+02 0.0096 26.1 9.5 98 396-509 124-224 (291)
486 KOG1258 mRNA processing protei 26.6 8.9E+02 0.019 26.6 14.2 45 459-503 377-421 (577)
487 PRK11619 lytic murein transgly 25.6 1.9E+02 0.0041 32.5 7.1 54 457-510 321-374 (644)
488 cd00280 TRFH Telomeric Repeat 25.3 3.9E+02 0.0085 24.7 7.6 31 453-484 116-146 (200)
489 KOG2041 WD40 repeat protein [G 25.2 2.4E+02 0.0052 31.5 7.3 65 447-523 795-859 (1189)
490 PF07219 HemY_N: HemY protein 25.2 1.4E+02 0.0031 24.6 4.7 36 393-428 53-88 (108)
491 COG2178 Predicted RNA-binding 25.0 5.7E+02 0.012 23.8 9.8 100 400-508 30-147 (204)
492 PF02184 HAT: HAT (Half-A-TPR) 24.2 1.5E+02 0.0032 18.8 3.3 24 464-488 3-26 (32)
493 PF02064 MAS20: MAS20 protein 22.9 1.9E+02 0.0042 24.6 5.0 32 487-518 68-99 (121)
494 PLN00122 serine/threonine prot 22.8 5E+02 0.011 23.6 7.9 69 479-547 94-163 (170)
495 TIGR00985 3a0801s04tom mitocho 22.5 2.4E+02 0.0053 24.9 5.7 41 391-431 82-123 (148)
496 PRK15326 type III secretion sy 22.4 3.8E+02 0.0083 20.9 7.6 33 496-528 21-53 (80)
497 PF10938 YfdX: YfdX protein; 21.7 1.7E+02 0.0036 26.1 4.7 71 398-476 74-145 (155)
498 PRK15490 Vi polysaccharide bio 21.6 6.5E+02 0.014 27.8 9.9 56 460-515 20-75 (578)
499 PHA02537 M terminase endonucle 21.5 3.8E+02 0.0083 25.6 7.3 79 399-486 129-217 (230)
500 PF03745 DUF309: Domain of unk 21.4 3.4E+02 0.0073 19.9 7.0 60 403-471 3-62 (62)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-64 Score=493.76 Aligned_cols=355 Identities=50% Similarity=0.808 Sum_probs=334.0
Q ss_pred cCcccCCCCCCCeEEEEEEEEeCCCeEeeec---cceEEEeCCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCC
Q 008251 162 EGEKWENPKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238 (572)
Q Consensus 162 ~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~~~~~ 238 (572)
+|.|+..|..|+.|.+||++++.+|+.|++| +|+.|.+|.|+++.||..++.+|+. |+.+.|
T Consensus 2 eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~p- 66 (397)
T KOG0543|consen 2 EGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGSP- 66 (397)
T ss_pred CCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCccccccccccccccc--------------cccCCC-
Confidence 6889999999999999999999999999988 5899999999999999999999998 555554
Q ss_pred CCCCCCCCCCCeEEEEEEEecccceeeeeCCcceEEEEEeCCCC-cCCCCCCCEEEEEEEEEecCCcEEEecCCCCCccc
Q 008251 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQL 317 (572)
Q Consensus 239 ~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~k~il~~G~g-~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~ 317 (572)
+.||++++|.|+|+|. |++|+|+|+++|.| ..+|..|..|+|||.|.+.|+ +|+++.. .
T Consensus 67 ----p~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~-----~ 126 (397)
T KOG0543|consen 67 ----PKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQREL-----R 126 (397)
T ss_pred ----CCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceecccc-----c
Confidence 6799999999999998 89999999999999 689999999999999999988 7776543 3
Q ss_pred EEEEcCC-cchhhHHHHHHhccCCCcEEEEEEcCCCccCCccccccccCCCCCCcEEEEEEEEEee-ecccccCCChHHH
Q 008251 318 FEFKTDE-EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE-KEKESWDMNTEEK 395 (572)
Q Consensus 318 ~~~~lg~-~~vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~IeLl~~~-~~~~~~~~~~~e~ 395 (572)
|.|.+|+ ..+|.||++||++|++||++.|+|+|+|+||..+.. .+.|||++++.|+|+|++|. +...+|.|..+++
T Consensus 127 fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~--~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~ 204 (397)
T KOG0543|consen 127 FEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE--PPLIPPNATLLYEVELLDFELKEDESWKMFAEER 204 (397)
T ss_pred eEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC--CCCCCCCceEEEEEEEEeeecCcccccccchHHH
Confidence 8888999 589999999999999999999999999999955433 47899999999999999999 8899999999999
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHH
Q 008251 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (572)
Q Consensus 396 ~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al 475 (572)
+..|...++.||.+|+.|+|..|...|++|+.++.+....+.++......++..||+|+|.||+|+++|..|+.+|+++|
T Consensus 205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 008251 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMSMFGSA 553 (572)
Q Consensus 476 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 553 (572)
+++|+|+||+||+|+||+.+++|+.|+.+|++|++++|+|++++.+|..|.++.++++.+++++|++||.++......
T Consensus 285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~~~k 362 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEESAK 362 (397)
T ss_pred hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876443
No 2
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-36 Score=297.00 Aligned_cols=349 Identities=37% Similarity=0.553 Sum_probs=269.5
Q ss_pred EcccCCCCCCCCCEEEEEEEEEecCCCEEeecCCCCCceEEEcCCCccchhHHHHHcccccCcEEEEEecCCCccCCCCC
Q 008251 45 KEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS 124 (572)
Q Consensus 45 ~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~G~~~~~~g~e~al~gm~~Ge~~~i~ip~~~ayg~~~~ 124 (572)
++|+|++.|..||.|.+||++++.||+.||||.+ +.|+.|.+|.|.++.||..++..|+. |+.+.
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~ 65 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGS 65 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccc--------------cccCC
Confidence 4799999999999999999999999999999998 79999999999999999999999998 77888
Q ss_pred CCCCCCCCcEEEEEEEeEeeeccccccccceEEEEeecCcc-cCCCCCCCeEEEEEEEEeCCCeEeeec-cceEEEeCC-
Q 008251 125 PPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEK-WENPKDLDEVLVNYEARLEDGMVVGKA-DGVEFTVKD- 201 (572)
Q Consensus 125 ~~~ip~~~~l~~~v~l~~~~~~~~~~~d~~v~k~i~~~g~g-~~~~~~~d~V~v~y~~~~~~g~~~~~~-~~~~~~~g~- 201 (572)
++.+|+++++.|+|+++ |++++++|+.+|.| ..+|+.+..|.|||.+.+.++ +|+++ ..+.|..|.
T Consensus 66 pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~~fe~~~Ge~ 134 (397)
T KOG0543|consen 66 PPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRELRFEFGEGED 134 (397)
T ss_pred CCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccccceEEecCCc
Confidence 89999999999999997 89999999999999 999999999999999999888 66665 556788888
Q ss_pred CCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEEecccceeeeeCCcceEEEEEeCCC
Q 008251 202 GHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD 281 (572)
Q Consensus 202 ~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~k~il~~G~ 281 (572)
..+|.||+.+|..|++||++.|+|+|+++||+.+.. .+.||||++|.|+|+|++|....+-.
T Consensus 135 ~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~----~p~IPPnA~l~yEVeL~~f~~~~~~s-------------- 196 (397)
T KOG0543|consen 135 IDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE----PPLIPPNATLLYEVELLDFELKEDES-------------- 196 (397)
T ss_pred cchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC----CCCCCCCceEEEEEEEEeeecCcccc--------------
Confidence 479999999999999999999999999999954432 47899999999999999997412110
Q ss_pred CcCCCCCCCEEEEEEEEE-ecCCcEEEecCCCCCcccEEEEcCCc-chhhHHHHHHhccCCCcEEEEEEcCCCccCCccc
Q 008251 282 GFERPNEGAVVKVKLIGK-LQDGTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAES 359 (572)
Q Consensus 282 g~~~p~~~~~v~v~~~~~-l~~g~~~~~~~~~~~~~~~~~~lg~~-~vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~ 359 (572)
-..++..++....+ .+.|+.+ |.-|.. .-..-.++|+..|. .+..+
T Consensus 197 ----~~~~~~e~l~~A~~~ke~Gn~~-------------fK~gk~~~A~~~Yerav~~l~----------~~~~~----- 244 (397)
T KOG0543|consen 197 ----WKMFAEERLEAADRKKERGNVL-------------FKEGKFKLAKKRYERAVSFLE----------YRRSF----- 244 (397)
T ss_pred ----cccchHHHHHHHHHHHHhhhHH-------------HhhchHHHHHHHHHHHHHHhh----------ccccC-----
Confidence 01111111111100 1123222 222221 11222333332221 11000
Q ss_pred cccccCCCCCCcEEEEEEEEEeeecccccCCChHHHH---HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCC
Q 008251 360 QQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKI---EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG 436 (572)
Q Consensus 360 ~~~~~~ip~~~~l~f~IeLl~~~~~~~~~~~~~~e~~---~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~ 436 (572)
+. .+++. .....+.+.+.++.+.++|..|+....++|.+.+.+.
T Consensus 245 -----------------------------~~-ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~--- 291 (397)
T KOG0543|consen 245 -----------------------------DE-EEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV--- 291 (397)
T ss_pred -----------------------------CH-HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch---
Confidence 00 11111 1234567889999999999999999999999887755
Q ss_pred hHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHhCCC
Q 008251 437 DEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA-EFDIKKALEIDPD 514 (572)
Q Consensus 437 ~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A-~~~~~~al~l~P~ 514 (572)
++++.+|.|++.+++|+.|+.++++|++++|+|-.+...+..|..+..++.+. .+.|.+.+..-+.
T Consensus 292 ------------KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 292 ------------KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred ------------hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 44899999999999999999999999999999988888888888877777655 6777777765443
No 3
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-36 Score=274.92 Aligned_cols=277 Identities=26% Similarity=0.370 Sum_probs=240.0
Q ss_pred eCCcceEEEEEeCCCCc-CCCCCCCEEEEEEEEEecC--CcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcE
Q 008251 267 TDDKKVIKKILKEGDGF-ERPNEGAVVKVKLIGKLQD--GTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEV 343 (572)
Q Consensus 267 ~~d~~~~k~il~~G~g~-~~p~~~~~v~v~~~~~l~~--g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~ 343 (572)
+.-.++.|+||.+|.|. +.-.+|++|++||.+...+ ++++|+++. .+.|+++++|.....+.||.+|++|.++|+
T Consensus 7 l~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk--~gkPmeiiiGkkFkL~VwE~il~tM~v~Ev 84 (329)
T KOG0545|consen 7 LNVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRK--VGKPMEIIIGKKFKLEVWEIILTTMRVHEV 84 (329)
T ss_pred ccchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhh--cCCCeEEeeccccccHHHHHHHHHHhhhhH
Confidence 34567999999999985 4457899999999998765 578998876 799999999999999999999999999999
Q ss_pred EEEEEcCC----CccCCcccc-------c--------cc---------------cCCCCCCcEEEEEEEEEeee----cc
Q 008251 344 ALLTIAPE----YAFGSAESQ-------Q--------EL---------------AVVPPNSTVHYEVELVSFEK----EK 385 (572)
Q Consensus 344 ~~v~i~~~----~~yg~~~~~-------~--------~~---------------~~ip~~~~l~f~IeLl~~~~----~~ 385 (572)
+.|+|+.. |.|-+.... + .+ ......++|.|.|+|+.+.. ..
T Consensus 85 aqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~ 164 (329)
T KOG0545|consen 85 AQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQR 164 (329)
T ss_pred HHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhcc
Confidence 99988754 322221000 0 00 00123468999999998874 46
Q ss_pred cccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccC---CCChHHHHHHHHHHHHhHhhHHHHHHhcC
Q 008251 386 ESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT---SFGDEEKKQAKALKVACNLNNAACKLKLK 462 (572)
Q Consensus 386 ~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~---~~~~e~~~~~~~~~~~~~~nla~~~~k~~ 462 (572)
++|+|+.++++.....++++||.+|+.|+|.+|...|..|+-++.+.. ...+.+|.++......+++|.++|+++.+
T Consensus 165 e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~ 244 (329)
T KOG0545|consen 165 ETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE 244 (329)
T ss_pred ccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH
Confidence 889999999999999999999999999999999999999998877643 34568999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008251 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR-DVKLEYKTLKEKMKEYNKKEAKFYG 541 (572)
Q Consensus 463 ~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~-~~~~~l~~l~~~~~~~~~~~~~~~~ 541 (572)
+|.+++++|+.+|..+|.|+||||+||+|+....+..+|.++|+++|+++|.-+ .+..+++.+..++++.+..++..|.
T Consensus 245 e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~ 324 (329)
T KOG0545|consen 245 EYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCR 324 (329)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999964 6788999999999999999999999
Q ss_pred hhhh
Q 008251 542 NMFA 545 (572)
Q Consensus 542 ~~f~ 545 (572)
+||+
T Consensus 325 kmfs 328 (329)
T KOG0545|consen 325 KMFS 328 (329)
T ss_pred HhcC
Confidence 9996
No 4
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.9e-28 Score=213.37 Aligned_cols=169 Identities=32% Similarity=0.472 Sum_probs=139.4
Q ss_pred EEcCCCccchhHHHHHcccccCcEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeEeeecc---ccccccceEEEEee
Q 008251 85 FTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVK---DICKDGGIIKKILK 161 (572)
Q Consensus 85 ~~~G~~~~~~g~e~al~gm~~Ge~~~i~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~~---~~~~d~~v~k~i~~ 161 (572)
|.+|.+.+++|.+.++.||+.|+++.+++||+++||..+.. .-..+++.+.++...... .......+...++.
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~ 76 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG----DLNILVITILLVLLFRASAAEKWNPDEELQIGVLK 76 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc----cccceEEEeeeeehhhhhhhhhcCCCCceeEEEEE
Confidence 45788999999999999999999999999999999965532 112456666665544322 23334444444443
Q ss_pred c-CcccCCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEeCCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCC
Q 008251 162 E-GEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK 236 (572)
Q Consensus 162 ~-g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~~~ 236 (572)
. .........||.+++||++.+.||++||+| +|+.|++|.+++++||+.+|.+|++||+|++.|||++|||+.|.
T Consensus 77 ~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~ 156 (188)
T KOG0549|consen 77 KPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGA 156 (188)
T ss_pred CCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCccCCC
Confidence 3 335678889999999999999999999998 79999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCeEEEEEEEecccc
Q 008251 237 SASGNEGAVPPNATLQIALELVSWKT 262 (572)
Q Consensus 237 ~~~~~~~~ip~~~~l~~~v~l~~~~~ 262 (572)
+ +.||++++|+|+|+|+....
T Consensus 157 ~-----~~IP~~A~LiFdiELv~i~~ 177 (188)
T KOG0549|consen 157 P-----PKIPGDAVLIFDIELVKIER 177 (188)
T ss_pred C-----CCCCCCeeEEEEEEEEEeec
Confidence 5 56999999999999999764
No 5
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.1e-27 Score=206.88 Aligned_cols=176 Identities=28% Similarity=0.467 Sum_probs=144.2
Q ss_pred EEeCCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEEecccce---eeeeCCcceE
Q 008251 197 FTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTV---SEITDDKKVI 273 (572)
Q Consensus 197 ~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~---~d~~~d~~~~ 273 (572)
+++|.+.+++|.+.+|.+|+.|+++++++||+++||..+. ..-..+++.+.++.+... .....+..+.
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 71 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR---------GDLNILVITILLVLLFRASAAEKWNPDEELQ 71 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCccccccccc---------ccccceEEEeeeeehhhhhhhhhcCCCCcee
Confidence 3578899999999999999999999999999999995544 233446677776665421 2222334444
Q ss_pred EEEEeCC-CCcCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEEEEEEcCCC
Q 008251 274 KKILKEG-DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEY 352 (572)
Q Consensus 274 k~il~~G-~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i~~~~ 352 (572)
-.+++.= .+..+...|+.+++||++.++||++||+++. +++|++|+||.++||+|||++|..|++||+..++|||++
T Consensus 72 I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~--rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~L 149 (188)
T KOG0549|consen 72 IGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYS--RGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHL 149 (188)
T ss_pred EEEEECCccccccccCCCEEEEEEEEEecCCCEEeeecc--CCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccc
Confidence 4444432 2557788899999999999999999999874 789999999999999999999999999999999999999
Q ss_pred ccCCccccccccCCCCCCcEEEEEEEEEeeeccc
Q 008251 353 AFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386 (572)
Q Consensus 353 ~yg~~~~~~~~~~ip~~~~l~f~IeLl~~~~~~~ 386 (572)
+||+.+... .||++++|+|+|+|..+...+.
T Consensus 150 gYG~~G~~~---~IP~~A~LiFdiELv~i~~~~~ 180 (188)
T KOG0549|consen 150 GYGERGAPP---KIPGDAVLIFDIELVKIERGPP 180 (188)
T ss_pred cCccCCCCC---CCCCCeeEEEEEEEEEeecCCC
Confidence 999998764 5999999999999999987644
No 6
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.3e-26 Score=176.95 Aligned_cols=106 Identities=58% Similarity=1.029 Sum_probs=103.3
Q ss_pred CeEEEEEEcccCCCCCCCCCEEEEEEEEEecCCCEEeecCCCCCceEEEcCCCccchhHHHHHcccccCcEEEEEecCCC
Q 008251 38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL 117 (572)
Q Consensus 38 g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~G~~~~~~g~e~al~gm~~Ge~~~i~ip~~~ 117 (572)
|+.++++.+|+|...|+.||+|++||++.+.||+.|||+.+++.||.|.+|.|.+|.||++++..|.+|+++.++|+|++
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~ 81 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY 81 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence 68899999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCcEEEEEEEeEe
Q 008251 118 AYGESGSPPTIPPNATLQFDVELLSW 143 (572)
Q Consensus 118 ayg~~~~~~~ip~~~~l~~~v~l~~~ 143 (572)
|||..+.+..||||++|+|+|||+++
T Consensus 82 aYG~~G~p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 82 AYGPRGHPGGIPPNATLVFDVELLKV 107 (108)
T ss_pred ccCCCCCCCccCCCcEEEEEEEEEec
Confidence 99999999999999999999999876
No 7
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4e-26 Score=203.96 Aligned_cols=108 Identities=57% Similarity=0.977 Sum_probs=104.4
Q ss_pred eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEecCCCEEeecCCCCCceEEEcCCCccchhHHHHHcccccCcEEEEE
Q 008251 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (572)
Q Consensus 33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~G~~~~~~g~e~al~gm~~Ge~~~i~ 112 (572)
.+.++|++|++++.|+| ..|..+|.|.|||++++.||++|||++++++|+.|.+| ++|+||.++|.+|++|++++|+
T Consensus 97 ~~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~ 173 (205)
T COG0545 97 KTLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLT 173 (205)
T ss_pred eECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEE
Confidence 45899999999999999 99999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ecCCCccCCCCCCCCCCCCCcEEEEEEEeEe
Q 008251 113 IPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (572)
Q Consensus 113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~ 143 (572)
|||++|||..+.++.||||++|+|+|+|+++
T Consensus 174 IP~~laYG~~g~~g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 174 IPPELAYGERGVPGVIPPNSTLVFEVELLDV 204 (205)
T ss_pred eCchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence 9999999999988789999999999999986
No 8
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.1e-24 Score=166.45 Aligned_cols=106 Identities=38% Similarity=0.646 Sum_probs=99.3
Q ss_pred ceEEEEEeCCCCcCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEEEEEEcC
Q 008251 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAP 350 (572)
Q Consensus 271 ~~~k~il~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i~~ 350 (572)
++-+.+|.+|+|...|..|++|++||++.|.||+.|||+. +++.||.|.+|.+++|.||+.++..|.+||++.++|+|
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~--dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~p 79 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSR--DRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISP 79 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeeccc--ccCCCeeEEecCcceeechhhcchhccccccceeeecc
Confidence 3678899999999999999999999999999999999876 58999999999999999999999999999999999999
Q ss_pred CCccCCccccccccCCCCCCcEEEEEEEEEe
Q 008251 351 EYAFGSAESQQELAVVPPNSTVHYEVELVSF 381 (572)
Q Consensus 351 ~~~yg~~~~~~~~~~ip~~~~l~f~IeLl~~ 381 (572)
+|+||..+.+ ..||||++|.|++||+++
T Consensus 80 d~aYG~~G~p---~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 80 DYAYGPRGHP---GGIPPNATLVFDVELLKV 107 (108)
T ss_pred ccccCCCCCC---CccCCCcEEEEEEEEEec
Confidence 9999998843 589999999999999876
No 9
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.88 E-value=6.1e-22 Score=184.48 Aligned_cols=108 Identities=46% Similarity=0.776 Sum_probs=103.4
Q ss_pred eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEecCCCEEeecCCCCCceEEEcCCCccchhHHHHHcccccCcEEEEE
Q 008251 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (572)
Q Consensus 33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~G~~~~~~g~e~al~gm~~Ge~~~i~ 112 (572)
..+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.+| ++++||+++|.+|++|++++|+
T Consensus 98 ~~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~ 174 (206)
T PRK11570 98 NSTESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELT 174 (206)
T ss_pred EECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEE
Confidence 45899999999999999 78999999999999999999999999988899999997 7999999999999999999999
Q ss_pred ecCCCccCCCCCCCCCCCCCcEEEEEEEeEe
Q 008251 113 IPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (572)
Q Consensus 113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~ 143 (572)
|||++|||..+.++.|||+++|+|+|+|+++
T Consensus 175 IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 175 IPHELAYGERGAGASIPPFSTLVFEVELLEI 205 (206)
T ss_pred ECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence 9999999999988899999999999999886
No 10
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.86 E-value=5e-21 Score=173.94 Aligned_cols=110 Identities=35% Similarity=0.511 Sum_probs=102.5
Q ss_pred eecCCCeEEEEEEc--ccCCCCCCCCCEEEEEEEEEecCCCEEeecCCCCCceEEEcCCCccchhHHHHHcccccCcEEE
Q 008251 33 EIGNQGLKKKLVKE--GEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110 (572)
Q Consensus 33 ~~~~~g~~~~~~~~--G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~G~~~~~~g~e~al~gm~~Ge~~~ 110 (572)
..+++|++|.++.+ |+| ..|+.||.|.+||++++.||++|++++.. .|+.|.+|.+++++||+++|.+|++||+++
T Consensus 65 ~~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~ 142 (177)
T TIGR03516 65 ETSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGETAT 142 (177)
T ss_pred eECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCEEE
Confidence 45889999999976 666 68899999999999999999999999874 699999999999999999999999999999
Q ss_pred EEecCCCccCCCCCCCCCCCCCcEEEEEEEeEee
Q 008251 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWT 144 (572)
Q Consensus 111 i~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~ 144 (572)
|+|||++|||..+.+..||+|++|+|+|+|+++.
T Consensus 143 ~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 143 FLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence 9999999999999888999999999999999875
No 11
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.9e-21 Score=177.67 Aligned_cols=108 Identities=49% Similarity=0.872 Sum_probs=103.0
Q ss_pred eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEec-CCCEEeecCCCCCceE-EEcCCCccchhHHHHHcccccCcEEE
Q 008251 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFK-FTLGQGNVIKGWDIGIKTMKKGENAV 110 (572)
Q Consensus 33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~-~g~~~~~t~~~~~p~~-~~~G~~~~~~g~e~al~gm~~Ge~~~ 110 (572)
.+.++||.|+.++.|+| +.+..|+.|.+||.+++. +|++|++++.. .|+. |.+|.+.+|+||+.++.||++|++|+
T Consensus 116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRr 193 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGKRR 193 (226)
T ss_pred eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCeeE
Confidence 35899999999999999 999999999999999998 99999999974 8999 99999999999999999999999999
Q ss_pred EEecCCCccCCCCCCCCCCCCCcEEEEEEEeEe
Q 008251 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (572)
Q Consensus 111 i~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~ 143 (572)
|+|||++|||..+.+ .||+|++|+|+|+|+.+
T Consensus 194 viIPp~lgYg~~g~~-~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 194 VIIPPELGYGKKGVP-EIPPNSTLVFDVELLSV 225 (226)
T ss_pred EEeCccccccccCcC-cCCCCCcEEEEEEEEec
Confidence 999999999999976 99999999999999875
No 12
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=7.6e-21 Score=170.19 Aligned_cols=103 Identities=34% Similarity=0.585 Sum_probs=95.8
Q ss_pred ccccceEEEEeecCcccCCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEeCCCCCcchHHHHHhhccCCcEEEEEe
Q 008251 150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV 225 (572)
Q Consensus 150 ~~d~~v~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~v 225 (572)
+..+++.+.++..|.| ..|..++.|+|||++++.+|++||+| +|+.|.+| ++|+||.++|.+|++|++++++|
T Consensus 98 ~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~I 174 (205)
T COG0545 98 TLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTI 174 (205)
T ss_pred ECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEEe
Confidence 4678899999999998 88999999999999999999999987 78888888 99999999999999999999999
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEEecc
Q 008251 226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (572)
Q Consensus 226 p~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (572)
||++|||..|.+ +.||||++|+|+|+|+++
T Consensus 175 P~~laYG~~g~~-----g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 175 PPELAYGERGVP-----GVIPPNSTLVFEVELLDV 204 (205)
T ss_pred CchhccCcCCCC-----CCCCCCCeEEEEEEEEec
Confidence 999999999874 459999999999999985
No 13
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=1.1e-19 Score=161.01 Aligned_cols=144 Identities=34% Similarity=0.498 Sum_probs=127.5
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHH
Q 008251 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (572)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a 474 (572)
.+..+..+|.+||.+|+.|+|..|...|..||.++|.... ..+..||.|+|.|.+|++.|+.|+..|.+|
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~----------e~rsIly~Nraaa~iKl~k~e~aI~dcsKa 160 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST----------EERSILYSNRAAALIKLRKWESAIEDCSKA 160 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH----------HHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence 4677899999999999999999999999999999987552 567888999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 008251 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMSMFG 551 (572)
Q Consensus 475 l~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~~~ 551 (572)
|+++|++.+|+.|||.+|.++..|++|+.+|++.++++|.+.+++..+.++...+.+.+++.+. .|+.++.+++
T Consensus 161 iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKe---e~m~kLKdlG 234 (271)
T KOG4234|consen 161 IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKE---EMMEKLKDLG 234 (271)
T ss_pred HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHH---HHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999887777666655443 3555555544
No 14
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=5.2e-20 Score=174.29 Aligned_cols=125 Identities=33% Similarity=0.441 Sum_probs=119.0
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHH
Q 008251 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (572)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~ 473 (572)
+-...|+.+|.+||.+++.++|.+|+..|.+||.+.|.+..+ |+|+|++|.++++|..|+++|..
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVy---------------ycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVY---------------YCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchH---------------HHHHHHHHHHhcchHHHHHHHHH
Confidence 677889999999999999999999999999999999988766 99999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008251 474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (572)
Q Consensus 474 al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~ 533 (572)
||.+||.+.|+|-|+|.+|+.+|+|++|++.|++||+++|+|...+..|+.+.+++++..
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999888776554
No 15
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.81 E-value=2.1e-19 Score=173.52 Aligned_cols=110 Identities=49% Similarity=0.876 Sum_probs=102.8
Q ss_pred eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEecCCCEEeecCCCCCceEEEcCCCccchhHHHHHcccccCcEEEEE
Q 008251 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (572)
Q Consensus 33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~G~~~~~~g~e~al~gm~~Ge~~~i~ 112 (572)
..+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.++ +++|||+++|.+|++|++++|+
T Consensus 142 ~~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~ 218 (269)
T PRK10902 142 KTTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV 218 (269)
T ss_pred EECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEE
Confidence 34899999999999999 78999999999999999999999999988899999996 6999999999999999999999
Q ss_pred ecCCCccCCCCCCCCCCCCCcEEEEEEEeEeeec
Q 008251 113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146 (572)
Q Consensus 113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~ 146 (572)
||++++||..+.+ .||+|++++|+|+|+++...
T Consensus 219 IP~~laYG~~g~~-gIppns~LvfeVeLl~V~~~ 251 (269)
T PRK10902 219 IPPELAYGKAGVP-GIPANSTLVFDVELLDVKPA 251 (269)
T ss_pred ECchhhCCCCCCC-CCCCCCcEEEEEEEEEeccC
Confidence 9999999999864 79999999999999998753
No 16
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.78 E-value=1.4e-18 Score=143.01 Aligned_cols=93 Identities=56% Similarity=0.979 Sum_probs=86.7
Q ss_pred CCCCCCCCCEEEEEEEEEecCCCEEeecCCCCCceEEEcCCCccchhHHHHHcccccCcEEEEEecCCCccCCCCC-CCC
Q 008251 49 GWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS-PPT 127 (572)
Q Consensus 49 G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~G~~~~~~g~e~al~gm~~Ge~~~i~ip~~~ayg~~~~-~~~ 127 (572)
|..+|+.||.|.|||++++.+|++|++++..+.|+.|.+|.+++++||++||.+|++|++++|.|||++|||..+. +..
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ 80 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPK 80 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTT
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCC
Confidence 4457999999999999999999999999777799999999999999999999999999999999999999999887 457
Q ss_pred CCCCCcEEEEEEEe
Q 008251 128 IPPNATLQFDVELL 141 (572)
Q Consensus 128 ip~~~~l~~~v~l~ 141 (572)
||++++++|+|+|+
T Consensus 81 ip~~~~l~f~Iell 94 (94)
T PF00254_consen 81 IPPNSTLVFEIELL 94 (94)
T ss_dssp BTTTSEEEEEEEEE
T ss_pred cCCCCeEEEEEEEC
Confidence 99999999999985
No 17
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.76 E-value=2.2e-18 Score=153.64 Aligned_cols=125 Identities=24% Similarity=0.378 Sum_probs=97.3
Q ss_pred CCCCCCEEEEEEEEEecCCCEEeecCCCCCceEEEcCCCccchhHHHHHcccccCcEEEEEecCCCccCCCCCCCCCCCC
Q 008251 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (572)
Q Consensus 52 ~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~G~~~~~~g~e~al~gm~~Ge~~~i~ip~~~ayg~~~~~~~ip~~ 131 (572)
.++.|+.|.+||++++.||++|++|+..+.|+.|.+|.+++++||++||.||++|++++|.|||++|||+++
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d-------- 75 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS-------- 75 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC--------
Confidence 578999999999999999999999987679999999999999999999999999999999999999999877
Q ss_pred CcEEEEEEEeEeeecccc---------ccccc-eEEEEeecCcccCCCCCCCeEEEEEEEEeCCCeEeeec
Q 008251 132 ATLQFDVELLSWTSVKDI---------CKDGG-IIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA 192 (572)
Q Consensus 132 ~~l~~~v~l~~~~~~~~~---------~~d~~-v~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~ 192 (572)
..++..+....|...... ..++. +..+|++. .++.|++||||+++|.++.+.-
T Consensus 76 ~~~v~~vp~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~i--------~~~~v~vD~NHPLAGk~L~f~v 138 (156)
T PRK15095 76 PDLIQYFSRRDFMDAGEPEIGAIMLFTAMDGSEMPGVIREI--------NGDSITVDFNHPLAGQTVHFDI 138 (156)
T ss_pred hHHEEEecHHHCCcccCCCCCCEEEEECCCCCEEEEEEEEE--------cCCEEEEECCCcCCCCEEEEEE
Confidence 344444444443211000 01121 12233333 4589999999999999987764
No 18
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.8e-18 Score=152.54 Aligned_cols=130 Identities=28% Similarity=0.419 Sum_probs=100.4
Q ss_pred CCCCCCEEEEEEEEEecCCCEEeecCCCCCceEEEcCCCccchhHHHHHcccccCcEEEEEecCCCccCCCCCCCCCCCC
Q 008251 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (572)
Q Consensus 52 ~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~G~~~~~~g~e~al~gm~~Ge~~~i~ip~~~ayg~~~~~~~ip~~ 131 (572)
+++.||.|+|||++++.||++||+|...+.|+.|++|.|++++|||+||.||.+|++++|.|||+.|||+++.
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~------- 74 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDP------- 74 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCCh-------
Confidence 5789999999999999999999999875689999999999999999999999999999999999999999883
Q ss_pred CcEEEEEEEeEeeecccc---------ccccceEEEEeecCcccCCCCCCCeEEEEEEEEeCCCeEeeeccceEE
Q 008251 132 ATLQFDVELLSWTSVKDI---------CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEF 197 (572)
Q Consensus 132 ~~l~~~v~l~~~~~~~~~---------~~d~~v~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~ 197 (572)
.++-.+..-.|....+. ..++.+..++... .++.|+|||||++++.++.++.+-..+
T Consensus 75 -~lvq~vp~~~F~~~~~~~vGm~~~~~~~~~~~~~~V~~V--------~~~~V~VDfNHpLAGktL~feveVv~v 140 (174)
T COG1047 75 -DLVQRVPRDEFQGVGELEVGMEVEAEGGDGEIPGVVTEV--------SGDRVTVDFNHPLAGKTLHFEVEVVEV 140 (174)
T ss_pred -HHeEEecHHHhCcCCCCCCCcEEEEcCCCceeeEEEEEE--------cCCEEEEeCCCcCCCCeEEEEEEEEEE
Confidence 44444444444332111 1111223333333 348999999999999999887544433
No 19
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=5.2e-18 Score=156.25 Aligned_cols=105 Identities=30% Similarity=0.473 Sum_probs=97.9
Q ss_pred cccccceEEEEeecCcccCCCCCCCeEEEEEEEEeC-CCeEeeec---cceE-EEeCCCCCcchHHHHHhhccCCcEEEE
Q 008251 149 ICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLE-DGMVVGKA---DGVE-FTVKDGHFCPTLAKAVKTMKKGEKVLL 223 (572)
Q Consensus 149 ~~~d~~v~k~i~~~g~g~~~~~~~d~V~v~y~~~~~-~g~~~~~~---~~~~-~~~g~~~~~~gl~~~l~~m~~Ge~~~i 223 (572)
.+..+++.+.-+..|.| ..+..|++|.++|.+++. .|++|+++ .|+. |.+|.+++|+||+.++.+|++|.+|+|
T Consensus 116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrv 194 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRV 194 (226)
T ss_pred eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCeeEE
Confidence 45678889999999998 899999999999999999 89999987 7888 999999999999999999999999999
Q ss_pred EecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEEecc
Q 008251 224 AVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (572)
Q Consensus 224 ~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (572)
+|||++|||..|.+ .||||+||+|+|+|+.+
T Consensus 195 iIPp~lgYg~~g~~------~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 195 IIPPELGYGKKGVP------EIPPNSTLVFDVELLSV 225 (226)
T ss_pred EeCccccccccCcC------cCCCCCcEEEEEEEEec
Confidence 99999999999884 89999999999999875
No 20
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.71 E-value=6.2e-17 Score=147.23 Aligned_cols=105 Identities=23% Similarity=0.339 Sum_probs=92.8
Q ss_pred cccceEEEEeec--CcccCCCCCCCeEEEEEEEEeCCCeEeeec---cceEEEeCCCCCcchHHHHHhhccCCcEEEEEe
Q 008251 151 KDGGIIKKILKE--GEKWENPKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV 225 (572)
Q Consensus 151 ~d~~v~k~i~~~--g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~v 225 (572)
...++...++.. |+| ..|..||.|++||.+++.+|++|+++ .|+.|.+|.+++++||+++|.+|++||++++.|
T Consensus 67 t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~i 145 (177)
T TIGR03516 67 SQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGETATFLF 145 (177)
T ss_pred CCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCCEEEEEE
Confidence 345666666654 555 67899999999999999999999987 589999999999999999999999999999999
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEEeccc
Q 008251 226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261 (572)
Q Consensus 226 p~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~ 261 (572)
||++|||..|.+ ..||||++|+|+|+|+++.
T Consensus 146 P~~~AYG~~g~~-----~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 146 PSHKAYGYYGDQ-----NKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred CHHHcCCCCCCC-----CCcCcCCcEEEEEEEEEec
Confidence 999999998863 6799999999999999974
No 21
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.71 E-value=4.3e-17 Score=148.93 Aligned_cols=124 Identities=20% Similarity=0.267 Sum_probs=96.3
Q ss_pred CCCCCCEEEEEEEEEecCCCEEeecCCCCCceEEEcCCCccchhHHHHHcccccCcEEEEEecCCCccCCCCCCCCCCCC
Q 008251 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (572)
Q Consensus 52 ~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~G~~~~~~g~e~al~gm~~Ge~~~i~ip~~~ayg~~~~~~~ip~~ 131 (572)
+++.+++|+|+|++++.+|++|++|+. ..|+.|++|.++++|+||+||.||++|++++|.|||+.|||+++.
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~------- 73 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE------- 73 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh-------
Confidence 468899999999999999999999986 489999999999999999999999999999999999999999883
Q ss_pred CcEEEEEEEeEeeecccc---------ccccceEEEEeecCcccCCCCCCCeEEEEEEEEeCCCeEeeec
Q 008251 132 ATLQFDVELLSWTSVKDI---------CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA 192 (572)
Q Consensus 132 ~~l~~~v~l~~~~~~~~~---------~~d~~v~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~ 192 (572)
.++..|..-.|...... ..++.+..+|++. .++.|+|+|||+|++.++.++.
T Consensus 74 -~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev--------~~d~V~vD~NHPLAG~~L~F~v 134 (196)
T PRK10737 74 -NLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAV--------EDDHVVVDGNHMLAGQNLKFNV 134 (196)
T ss_pred -HHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEE--------cCCEEEEECCCcCCCCEEEEEE
Confidence 44444443333211111 1122223333333 3489999999999999887764
No 22
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.70 E-value=1.2e-16 Score=149.11 Aligned_cols=103 Identities=30% Similarity=0.536 Sum_probs=94.4
Q ss_pred ccccceEEEEeecCcccCCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEeCCCCCcchHHHHHhhccCCcEEEEEe
Q 008251 150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV 225 (572)
Q Consensus 150 ~~d~~v~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~v 225 (572)
..+.++.+++++.|.| ..|..+|.|++||.+++.+|++|+++ +|+.|.++ ++++||+++|.+|++|++++++|
T Consensus 99 ~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~I 175 (206)
T PRK11570 99 STESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTI 175 (206)
T ss_pred ECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEEE
Confidence 4567889999999999 68999999999999999999999986 68888885 69999999999999999999999
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEEecc
Q 008251 226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (572)
Q Consensus 226 p~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (572)
||+++||+.|.+ +.|||+++|+|+|+|+++
T Consensus 176 P~~lAYG~~g~~-----~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 176 PHELAYGERGAG-----ASIPPFSTLVFEVELLEI 205 (206)
T ss_pred CHHHcCCCCCCC-----CCcCCCCeEEEEEEEEEE
Confidence 999999998863 679999999999999885
No 23
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.65 E-value=1.3e-15 Score=125.26 Aligned_cols=94 Identities=39% Similarity=0.668 Sum_probs=85.1
Q ss_pred CcCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEEEEEEcCCCccCCccccc
Q 008251 282 GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQ 361 (572)
Q Consensus 282 g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~ 361 (572)
|..+|..|++|+|||.+++.+|++|+++.. ...|++|.+|.+.+++||+.+|..|+.||++.|.+++.++||+.+...
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~--~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~ 78 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQ--EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP 78 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTT--TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeee--cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC
Confidence 445699999999999999999999998753 688999999999999999999999999999999999999999887643
Q ss_pred cccCCCCCCcEEEEEEEE
Q 008251 362 ELAVVPPNSTVHYEVELV 379 (572)
Q Consensus 362 ~~~~ip~~~~l~f~IeLl 379 (572)
..+|++++|.|+|+|+
T Consensus 79 --~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 79 --PKIPPNSTLVFEIELL 94 (94)
T ss_dssp --TTBTTTSEEEEEEEEE
T ss_pred --CCcCCCCeEEEEEEEC
Confidence 3599999999999985
No 24
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=8.9e-16 Score=155.34 Aligned_cols=117 Identities=36% Similarity=0.489 Sum_probs=110.5
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhc
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (572)
.+...+.+||.+|+.|+|..|+..|++||+..|.+.. +|.|+|.||.+++++..|+.+|++++++
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~---------------lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR---------------LYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4778899999999999999999999999999887664 4999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008251 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (572)
Q Consensus 478 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~ 529 (572)
+|++.++|+|.|.|+..+.+|++|++.|++++++||++.++...+++|...+
T Consensus 422 ~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 422 DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999997754
No 25
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=3.6e-15 Score=148.82 Aligned_cols=130 Identities=32% Similarity=0.416 Sum_probs=109.2
Q ss_pred cCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHH
Q 008251 388 WDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA 467 (572)
Q Consensus 388 ~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~A 467 (572)
-.++.+++++.|..+|.+||.+|+.|+|++||.+|+.||+++|..+.+ |.|+|.||..+|+|++.
T Consensus 104 ~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF---------------YsNraAcY~~lgd~~~V 168 (606)
T KOG0547|consen 104 KAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF---------------YSNRAACYESLGDWEKV 168 (606)
T ss_pred hccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh---------------hhhHHHHHHHHhhHHHH
Confidence 346788999999999999999999999999999999999999976544 88999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHH
Q 008251 468 EKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID-PDNRDVKLEYKTLKEKMKEY 532 (572)
Q Consensus 468 i~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~-P~~~~~~~~l~~l~~~~~~~ 532 (572)
+++|.+||+++|+++|||+||+.||.++|++.+|+.+..-.--++ =+|..+...+.++.+++.+.
T Consensus 169 ied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ 234 (606)
T KOG0547|consen 169 IEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMK 234 (606)
T ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999986433322 22444444455544444333
No 26
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.62 E-value=1.8e-15 Score=144.56 Aligned_cols=122 Identities=31% Similarity=0.440 Sum_probs=113.7
Q ss_pred ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHH
Q 008251 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL 470 (572)
Q Consensus 391 ~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~ 470 (572)
-.++.+..+..++++||.||++|.|.+|+.||.+++...|.+... +.|+|.+|++++.|..|..+
T Consensus 89 I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~---------------~~NRA~AYlk~K~FA~AE~D 153 (536)
T KOG4648|consen 89 IAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVY---------------HINRALAYLKQKSFAQAEED 153 (536)
T ss_pred HHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccc---------------hhhHHHHHHHHHHHHHHHHh
Confidence 346678888889999999999999999999999999999987765 78999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008251 471 CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (572)
Q Consensus 471 ~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~ 527 (572)
|+.|+.+|....|||-||+.|...+|+..+|.++++.+|+|+|++.+.+..+..+..
T Consensus 154 C~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 154 CEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999888888887755
No 27
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.59 E-value=8.3e-15 Score=141.72 Aligned_cols=104 Identities=34% Similarity=0.602 Sum_probs=93.0
Q ss_pred ccccceEEEEeecCcccCCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEeCCCCCcchHHHHHhhccCCcEEEEEe
Q 008251 150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV 225 (572)
Q Consensus 150 ~~d~~v~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~v 225 (572)
..+.++.++++.+|+| ..|..+|.|.|||.+.+.+|++|+++ .|+.|.+ +.++|||+++|.+|++|+++.|+|
T Consensus 143 ~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--~~vipG~~EaL~~Mk~Gek~~l~I 219 (269)
T PRK10902 143 TTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVI 219 (269)
T ss_pred ECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEec--CCcchHHHHHHhcCCCCcEEEEEE
Confidence 4577899999999999 68999999999999999999999986 4566655 579999999999999999999999
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEEecccc
Q 008251 226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT 262 (572)
Q Consensus 226 p~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~ 262 (572)
||+++||..|. +.||||++|+|+|+|+++..
T Consensus 220 P~~laYG~~g~------~gIppns~LvfeVeLl~V~~ 250 (269)
T PRK10902 220 PPELAYGKAGV------PGIPANSTLVFDVELLDVKP 250 (269)
T ss_pred CchhhCCCCCC------CCCCCCCcEEEEEEEEEecc
Confidence 99999999876 36999999999999999764
No 28
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.5e-14 Score=138.11 Aligned_cols=114 Identities=28% Similarity=0.380 Sum_probs=102.7
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHh
Q 008251 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (572)
Q Consensus 397 ~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (572)
+.|+.+|+.||.+|+.++|..|+.+|+++|+....+.. +.+.+|+|+|+|++-+++|..|+.+|.+|+.
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-----------lnavLY~NRAAa~~~l~NyRs~l~Dcs~al~ 147 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-----------LNAVLYTNRAAAQLYLGNYRSALNDCSAALK 147 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-----------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37999999999999999999999999999998766654 4678899999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008251 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (572)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~ 521 (572)
++|+|.||+||-|.|++.|.++.+|..|++..+.++-+++.+...
T Consensus 148 ~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l 192 (390)
T KOG0551|consen 148 LKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIEL 192 (390)
T ss_pred cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999888877665544433
No 29
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4e-14 Score=138.88 Aligned_cols=131 Identities=25% Similarity=0.379 Sum_probs=116.9
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHH
Q 008251 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (572)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~ 473 (572)
-.++..+.++++||.+|+.|+|..|.++|+.||.+.|.+.. ..+.||.|+|.+..++++..+|+.+|+.
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~-----------~naklY~nra~v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK-----------TNAKLYGNRALVNIRLGRLREAISDCNE 312 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc-----------hhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence 35667788999999999999999999999999999887553 3678899999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008251 474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (572)
Q Consensus 474 al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~ 536 (572)
|+.+|+...|||.++|.||+.+++|++|+++|++|++++.+ .+.+..++++...+++.+.+.
T Consensus 313 Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd 374 (486)
T KOG0550|consen 313 ALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKD 374 (486)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999877 678888888777766555443
No 30
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.52 E-value=1.2e-13 Score=141.81 Aligned_cols=119 Identities=20% Similarity=0.311 Sum_probs=109.7
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (572)
+..++.+|+.+|..++|..|+..|.+|+++.+.+. .+++++|.||+++++|++|+.+|++|++++
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~---------------~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA---------------ELYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34578899999999999999999999999888654 348899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008251 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (572)
Q Consensus 479 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~ 532 (572)
|+++.+|+++|.+|+.+|+|++|+.+|+++++++|++..+...+..|..++...
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999987777543
No 31
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.47 E-value=6.1e-13 Score=118.44 Aligned_cols=114 Identities=17% Similarity=0.214 Sum_probs=104.0
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008251 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (572)
Q Consensus 402 ~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (572)
+...|..++..|+|.+|+..|.+++...|.+.. +++++|.++.++|+|++|+..|+++++++|++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---------------a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWR---------------AHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 556799999999999999999999998876554 38899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008251 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (572)
Q Consensus 482 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~ 530 (572)
+.+++++|.|+..+|++++|+..|+++++++|++.........+...+.
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888877776655443
No 32
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.45 E-value=1.7e-12 Score=144.11 Aligned_cols=134 Identities=31% Similarity=0.384 Sum_probs=115.0
Q ss_pred CCCCCcEEEEEEEEEeeecccccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHH
Q 008251 366 VPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445 (572)
Q Consensus 366 ip~~~~l~f~IeLl~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~ 445 (572)
.|+...+....++..+. ....|.++.+++...+..++++|+.+|+.|+|..|+..|++++.+.|. .
T Consensus 95 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~------------ 160 (615)
T TIGR00990 95 APKNAPVEPADELPEID-ESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P------------ 160 (615)
T ss_pred CCCCCCCCccccccccc-hhhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h------------
Confidence 34444444444444333 355689999999999999999999999999999999999999998763 1
Q ss_pred HHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008251 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (572)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 516 (572)
..|+|+|.||+++++|++|+.+|+++|+++|++.++|+++|.+|..+|+|++|+.+|..++.+++.+.
T Consensus 161 ---~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~ 228 (615)
T TIGR00990 161 ---VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN 228 (615)
T ss_pred ---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 24889999999999999999999999999999999999999999999999999999999988877653
No 33
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=5.1e-13 Score=135.55 Aligned_cols=113 Identities=26% Similarity=0.332 Sum_probs=106.0
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (572)
+..++++||..|..|+|+.|+.+|+.|+.+.|.+. .+|.|++.||.++++|.+|+.+..+..+++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nh---------------vlySnrsaa~a~~~~~~~al~da~k~~~l~ 66 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNH---------------VLYSNRSAAYASLGSYEKALKDATKTRRLN 66 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCcc---------------chhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999988744 348999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008251 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (572)
Q Consensus 479 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~ 526 (572)
|+.+|+|.|+|.++..+|+|++|+..|.+.|+.+|+|+.....+..+.
T Consensus 67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999999999999999999998888888776
No 34
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=9.6e-13 Score=120.51 Aligned_cols=117 Identities=32% Similarity=0.409 Sum_probs=104.9
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHh
Q 008251 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (572)
Q Consensus 397 ~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (572)
..+++++++||.+|..++|..|+.+|.+||.+.|....+ +.|+|.||+++++|+.+..+|.+|++
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y---------------~tnralchlk~~~~~~v~~dcrralq 72 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASY---------------YTNRALCHLKLKHWEPVEEDCRRALQ 72 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchh---------------hhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence 458899999999999999999999999999999987766 77999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHH
Q 008251 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD-----NRDVKLEYKTLKEK 528 (572)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~-----~~~~~~~l~~l~~~ 528 (572)
++|+.+|++|-+|.+.+....|++|+..+++|+.+... -.++..+|+.++.+
T Consensus 73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~ 129 (284)
T KOG4642|consen 73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK 129 (284)
T ss_pred cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence 99999999999999999999999999999999776422 23577777776554
No 35
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.4e-12 Score=115.32 Aligned_cols=124 Identities=25% Similarity=0.358 Sum_probs=94.1
Q ss_pred CCCCCCeEEEEEEEEeCCCeEeeec----cceEEEeCCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCC
Q 008251 168 NPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEG 243 (572)
Q Consensus 168 ~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~~~~~~~~~~ 243 (572)
.+..++.|+++|+.++.+|+++++| .|+.|.+|.+++++||++||.+|.+|++.++.|||+.|||....
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~------- 74 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDP------- 74 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCCh-------
Confidence 3567899999999999999999987 59999999999999999999999999999999999999997643
Q ss_pred CCCCCCeEEEEEEEecccceeeeeCCcceEEEEEeCCC-----CcCCCCCCCEEEEEEEEEecCCcEEEe
Q 008251 244 AVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD-----GFERPNEGAVVKVKLIGKLQDGTVFVK 308 (572)
Q Consensus 244 ~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~k~il~~G~-----g~~~p~~~~~v~v~~~~~l~~g~~~~~ 308 (572)
.|+-.+.+..|.... +..+-..+.-++. |...-..+..|+|+|++.|++.++.++
T Consensus 75 ------~lvq~vp~~~F~~~~----~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~fe 134 (174)
T COG1047 75 ------DLVQRVPRDEFQGVG----ELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHFE 134 (174)
T ss_pred ------HHeEEecHHHhCcCC----CCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEEE
Confidence 455556665654411 2222223333231 223345688899999999987766543
No 36
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.38 E-value=1.4e-12 Score=116.55 Aligned_cols=68 Identities=24% Similarity=0.452 Sum_probs=63.4
Q ss_pred CCCCCCeEEEEEEEEeCCCeEeeec----cceEEEeCCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCC
Q 008251 168 NPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKG 235 (572)
Q Consensus 168 ~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~~ 235 (572)
.++.++.|++||++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|+++.+.|||+.|||...
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 4577899999999999999999986 6899999999999999999999999999999999999999654
No 37
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.37 E-value=1.3e-11 Score=108.32 Aligned_cols=105 Identities=12% Similarity=0.175 Sum_probs=96.8
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhc
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (572)
..+.+...|..++..|+|+.|...|+-.+.+.+.+... ++|||.|+..+++|.+|+..|.+++.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y---------------~~gLG~~~Q~~g~~~~AI~aY~~A~~L 98 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDY---------------WFRLGECCQAQKHWGEAIYAYGRAAQI 98 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35668899999999999999999999999998876655 889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008251 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (572)
Q Consensus 478 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~ 517 (572)
+|+++.++++.|.||+.+|+.+.|++.|+.|+...-+++.
T Consensus 99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 9999999999999999999999999999999998855443
No 38
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.33 E-value=2.4e-12 Score=129.75 Aligned_cols=122 Identities=22% Similarity=0.306 Sum_probs=113.8
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhc
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (572)
.|..++++++.+|+.+.|+.|+..|.+|+++.++...+ +.|+|++++|.++|..|+.++.+|+++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~---------------~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIY---------------FANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceee---------------echhhhhheeechhhhHHHHHHhhhhc
Confidence 46778999999999999999999999999999987665 679999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008251 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (572)
Q Consensus 478 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~ 534 (572)
+|...|+|+|+|.++++++++.+|..+|++...+.|+++.+...+..|+...+++.-
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~f 124 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKF 124 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999887765443
No 39
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.32 E-value=2.6e-11 Score=106.87 Aligned_cols=116 Identities=20% Similarity=0.288 Sum_probs=104.0
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (572)
+......|..+++.|+|..|+..|++++...+.+. .++.++|.|++++++|..|+..+++++..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS---------------RYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45578899999999999999999999998876543 347899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008251 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (572)
Q Consensus 479 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~ 529 (572)
|+++..++++|.+|..+|++++|+..|+++++++|++........++...+
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988777766665443
No 40
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.9e-12 Score=124.22 Aligned_cols=155 Identities=31% Similarity=0.450 Sum_probs=137.9
Q ss_pred ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHH----HHHHHHHHHHhHhhHHHHHHhcCCHHH
Q 008251 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEE----KKQAKALKVACNLNNAACKLKLKDYKQ 466 (572)
Q Consensus 391 ~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~----~~~~~~~~~~~~~nla~~~~k~~~~~~ 466 (572)
+....+..++..++.|+..|++++|..|...|.+++++..........+ +..+..++..++.|+|.|-++.+.|..
T Consensus 214 ~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~ 293 (372)
T KOG0546|consen 214 DFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGG 293 (372)
T ss_pred ccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCc
Confidence 4455677788899999999999999999999999999887422211111 344677888889999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008251 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (572)
Q Consensus 467 Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (572)
|+..|..+++.++.+.+|+||++.+++.+.++++|+++++.+....|++..+...+....++..+++.++++.+.+||.
T Consensus 294 a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s 372 (372)
T KOG0546|consen 294 ARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS 372 (372)
T ss_pred ceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999984
No 41
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.30 E-value=7.7e-12 Score=120.11 Aligned_cols=166 Identities=23% Similarity=0.272 Sum_probs=132.0
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHH
Q 008251 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472 (572)
Q Consensus 393 ~e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~ 472 (572)
-.+++......+.+......++|..++..+++.++..|....+ +...+--++.|+..-+++-+||..|+
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i-----------r~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI-----------RYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce-----------eeeeeheeeecccccCCHHHHHHHHH
Confidence 3456666777778888889999999999999999877764433 22234468899999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH----------------H
Q 008251 473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK----------------E 536 (572)
Q Consensus 473 ~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~----------------~ 536 (572)
++|+++|+++.+|..||.||+.-..|+.|+.+|++|++++++|..++.-+.++++..++..+. -
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI 411 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEI 411 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHH
Confidence 999999999999999999999999999999999999999999999999988887665443322 2
Q ss_pred HHHHHhhhhcccCCCCCccCCCCCCCCCCCCcCCC
Q 008251 537 AKFYGNMFAKMSMFGSAESNKAEPKEAEPMSVDSK 571 (572)
Q Consensus 537 ~~~~~~~f~~~~~~~~~~~~~~~k~~~e~~~~~~~ 571 (572)
.+.|++|-.+- ..+.=..+++||++|++|-+|-
T Consensus 412 ~KAYRKlAqkW--HPDNFqdEeEKKkAEKKFIDIA 444 (504)
T KOG0624|consen 412 TKAYRKLAQKW--HPDNFQDEEEKKKAEKKFIDIA 444 (504)
T ss_pred HHHHHHHHHhc--CCccccCHHHHHHHHHhhhhHH
Confidence 34455554321 2234456788999999998873
No 42
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.26 E-value=1.5e-11 Score=112.55 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=70.0
Q ss_pred CCCCCeEEEEEEEEeCCCeEeeec---cceEEEeCCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008251 169 PKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV 245 (572)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~~~~~~~~~~~i 245 (572)
+..++.|+++|+.++.+|++++++ .|+.|.+|.++++|+|+++|.+|.+|++.+|.|||+.|||....
T Consensus 3 I~~~~vV~l~Y~l~~~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~--------- 73 (196)
T PRK10737 3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE--------- 73 (196)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh---------
Confidence 456799999999999999999987 89999999999999999999999999999999999999997643
Q ss_pred CCCCeEEEEEEEeccc
Q 008251 246 PPNATLQIALELVSWK 261 (572)
Q Consensus 246 p~~~~l~~~v~l~~~~ 261 (572)
.+++.|....|.
T Consensus 74 ----~lV~~vpr~~F~ 85 (196)
T PRK10737 74 ----NLVQRVPKDVFM 85 (196)
T ss_pred ----HHEEEecHHHCC
Confidence 355566555553
No 43
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.22 E-value=4.2e-11 Score=122.92 Aligned_cols=132 Identities=17% Similarity=0.108 Sum_probs=107.6
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhc
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (572)
.+..+.+.||.+-..+.|++|+.+|.+|+.+-|..... +.|+|..|+.+|..+.||.+|+++|++
T Consensus 251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a---------------~gNla~iYyeqG~ldlAI~~Ykral~~ 315 (966)
T KOG4626|consen 251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVA---------------HGNLACIYYEQGLLDLAIDTYKRALEL 315 (966)
T ss_pred chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhh---------------ccceEEEEeccccHHHHHHHHHHHHhc
Confidence 45678899999999999999999999999887765544 778888888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008251 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (572)
Q Consensus 478 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (572)
+|+.+.||.++|.|+..+|+..+|..+|++||.+.|+++++..+|+.++..+...+.+- .+|++.|.
T Consensus 316 ~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~-~ly~~al~ 382 (966)
T KOG4626|consen 316 QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEAT-RLYLKALE 382 (966)
T ss_pred CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHH-HHHHHHHh
Confidence 88888888888888888888888888888888888888888888888776665544433 35555544
No 44
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.18 E-value=6.8e-11 Score=91.01 Aligned_cols=65 Identities=31% Similarity=0.474 Sum_probs=62.9
Q ss_pred HhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCC
Q 008251 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDP 513 (572)
Q Consensus 449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~-~~~~A~~~~~~al~l~P 513 (572)
.+++++|.+++.+++|++|+.+|+++++++|+++.+|+++|.||..++ ++++|+++|+++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 458899999999999999999999999999999999999999999999 79999999999999998
No 45
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=4e-10 Score=113.20 Aligned_cols=104 Identities=19% Similarity=0.129 Sum_probs=97.8
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhc
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (572)
.+..+..+|..+...|++..|+..|++|+++.|.+. .+++++|.++..+++|+.|+..+++++++
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~Al~l 127 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA---------------DAYNYLGIYLTQAGNFDAAYEAFDSVLEL 127 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 466789999999999999999999999999887654 34889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008251 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (572)
Q Consensus 478 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 516 (572)
+|++..+++++|.++...|++++|+++|+++++++|++.
T Consensus 128 ~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 128 DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999999999999996
No 46
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.13 E-value=8.1e-10 Score=103.77 Aligned_cols=111 Identities=18% Similarity=0.126 Sum_probs=97.6
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHH-HhcCC--HHHHHHHHHHH
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK-LKLKD--YKQAEKLCTKV 474 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~-~k~~~--~~~Ai~~~~~a 474 (572)
.+..+...|..+...|+|+.|+..|.+|+++.|.+.. +++++|.++ ...++ +++|+..++++
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~---------------~~~~lA~aL~~~~g~~~~~~A~~~l~~a 136 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE---------------LYAALATVLYYQAGQHMTPQTREMIDKA 136 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3567889999999999999999999999999887654 388999985 67777 59999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008251 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (572)
Q Consensus 475 l~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~ 523 (572)
++.+|+++.+++.+|.++..+|+|++|+.+++++++++|.+.+-...++
T Consensus 137 l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~ 185 (198)
T PRK10370 137 LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE 185 (198)
T ss_pred HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 9999999999999999999999999999999999999998754444443
No 47
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.10 E-value=1.7e-09 Score=92.54 Aligned_cols=111 Identities=17% Similarity=0.188 Sum_probs=96.8
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (572)
..+...|..+++.|+|.+|+..|.+++...+.... ...+++++|.++++.++|+.|+..+++++..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY------------APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 45678999999999999999999999987664321 123578999999999999999999999999988
Q ss_pred CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008251 480 RN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (572)
Q Consensus 480 ~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l 522 (572)
++ ..+++.+|.++.+++++++|+..|.++++..|++..+....
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 85 68899999999999999999999999999999997655443
No 48
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.10 E-value=3.8e-10 Score=116.05 Aligned_cols=111 Identities=20% Similarity=0.220 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (572)
..+.+.||.+...|.++.|.+.|.+|+...|.. ..+++|||..|-.++++++|+.+|+.||+++|
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~v~p~~---------------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P 419 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALEVFPEF---------------AAAHNNLASIYKQQGNLDDAIMCYKEALRIKP 419 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhChhh---------------hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence 334444444444444444444444444444432 33456666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 480 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
+.+.||.++|..|..+|+.+.|+.+|.+|+.++|...++..+|+.+
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi 465 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASI 465 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHH
Confidence 6666666666666666666666666666666666655555555544
No 49
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.06 E-value=1.5e-09 Score=120.56 Aligned_cols=137 Identities=15% Similarity=0.109 Sum_probs=87.2
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCC-------------ChHHHH------HHHHHHHHhHhhHHHHH
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKK------QAKALKVACNLNNAACK 458 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~e~~~------~~~~~~~~~~~nla~~~ 458 (572)
.+..+...|..++..|++++|+..|++++...|..... .++-.. ........+++++|.++
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLH 409 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34556777888888888888888888888776643211 000000 00011234566677777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008251 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (572)
Q Consensus 459 ~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~ 534 (572)
+.+|+|++|+.+|+++++++|++..+++++|.++..+|++++|+..|++++++.|++..+...+..+...+....+
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 7777777777777777777777777777777777777777777777777777777776666666666555444443
No 50
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.00 E-value=2.3e-09 Score=103.28 Aligned_cols=113 Identities=23% Similarity=0.257 Sum_probs=101.6
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHh
Q 008251 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (572)
Q Consensus 397 ~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (572)
..++.+.+.|+.++.+|+|..|+..|..|++..|.+... ++.+|..|+.+|+-..|+.++.++|+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~a---------------ifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQA---------------IFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHH---------------HHHHHHHHhhhcCCccchhhHHHHHh
Confidence 347889999999999999999999999999998876533 78999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008251 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (572)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 524 (572)
+.|+..-|...||.+++++|+++.|..+|+++|..+|++-.......+
T Consensus 101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqsk 148 (504)
T KOG0624|consen 101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSK 148 (504)
T ss_pred cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHH
Confidence 999999999999999999999999999999999999976544444333
No 51
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.99 E-value=1.6e-09 Score=82.15 Aligned_cols=65 Identities=29% Similarity=0.309 Sum_probs=60.8
Q ss_pred hhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008251 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (572)
Q Consensus 452 ~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 516 (572)
+++|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999984
No 52
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.99 E-value=1.1e-08 Score=94.14 Aligned_cols=110 Identities=24% Similarity=0.248 Sum_probs=96.4
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHH
Q 008251 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (572)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~ 473 (572)
.+...+..+...|..++..|+|.+|+..|+++++..+.... ...++.++|.++.++++|+.|+..+.+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 97 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND------------RSYILYNMGIIYASNGEHDKALEYYHQ 97 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35566778899999999999999999999999987654221 134688999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCCCC
Q 008251 474 VLDLDSRNVKALYRRAQAYIQMAD--------------LDLAEFDIKKALEIDPDN 515 (572)
Q Consensus 474 al~~~p~~~ka~~~~g~a~~~l~~--------------~~~A~~~~~~al~l~P~~ 515 (572)
++..+|++..+++.+|.+|..+++ +++|++.+++++.++|++
T Consensus 98 al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 98 ALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999999999999999988 678888888888889888
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=1.2e-09 Score=114.09 Aligned_cols=114 Identities=21% Similarity=0.271 Sum_probs=67.9
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (572)
+.+...||++--+++++.|+++|++|+.+.+.+.-+ |.-+|.-+..+++|+.|..+|++||..+|
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYa---------------yTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYA---------------YTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchh---------------hhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 568899999999999999999999999998865422 33444444444444444444444444444
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008251 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (572)
Q Consensus 480 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~ 528 (572)
.+-.|||-+|.+|++.++++.|.-.|++|++++|.|..+.-.+.....+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~ 535 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ 535 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH
Confidence 4444444444444444444444444444444444444444444443333
No 54
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.96 E-value=3.7e-08 Score=82.18 Aligned_cols=134 Identities=19% Similarity=0.189 Sum_probs=108.3
Q ss_pred hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHH
Q 008251 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC 471 (572)
Q Consensus 392 ~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~ 471 (572)
....++.+..+--+|..+-..|+.+.|++.|.+++.++|...+. |+|+|+.+.-+++.++|+.++
T Consensus 36 ~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSa---------------yNNRAQa~RLq~~~e~ALdDL 100 (175)
T KOG4555|consen 36 DTQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERASA---------------YNNRAQALRLQGDDEEALDDL 100 (175)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHh---------------hccHHHHHHHcCChHHHHHHH
Confidence 34567778888899999999999999999999999999876654 999999999999999999999
Q ss_pred HHHHhcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 008251 472 TKVLDLDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (572)
Q Consensus 472 ~~al~~~p~~----~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~ 546 (572)
++|+++.... ..++..||..|..+|+.+.|+.+|..|.++-... ++..+-.+.- +..-..+|...||.+
T Consensus 101 n~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F--Ar~QLV~lNP----YAAlCN~MLa~~f~q 173 (175)
T KOG4555|consen 101 NKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF--AREQLVELNP----YAALCNQMLADAFDQ 173 (175)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH--HHHHHHhcCh----HHHHHHHHHHHHHHh
Confidence 9999986543 4688999999999999999999999999987555 5555544432 222333444555544
No 55
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.95 E-value=1.2e-08 Score=93.82 Aligned_cols=134 Identities=23% Similarity=0.173 Sum_probs=89.8
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCC----------------ChHHHHHHH---HHHHHhHhhH
Q 008251 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF----------------GDEEKKQAK---ALKVACNLNN 454 (572)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~----------------~~e~~~~~~---~~~~~~~~nl 454 (572)
..-..+....+.|..++..|++..|....++||+..|+.... ..++..+.- .-...+++|.
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence 344567888999999999999999999999999988865432 001111111 1122344555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008251 455 AACKLKLKDYKQAEKLCTKVLDL--DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (572)
Q Consensus 455 a~~~~k~~~~~~Ai~~~~~al~~--~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~ 527 (572)
|.-+..+++|++|..++++|+.. .+..+..|-|+|.|-++.|+++.|..+|+++|+++|++......+.+.+-
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~ 184 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHY 184 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHH
Confidence 55555555555555555555542 12335677789999999999999999999999999998766665555433
No 56
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.93 E-value=9.7e-09 Score=91.39 Aligned_cols=100 Identities=11% Similarity=0.009 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 008251 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL 498 (572)
Q Consensus 419 ~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~ 498 (572)
...|+++++..|.. +.++|.++..+|+|++|+.+|++++.++|.+..+|+.+|.++..+|++
T Consensus 13 ~~~~~~al~~~p~~------------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 13 EDILKQLLSVDPET------------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHHHcCHHH------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence 35677777766531 457899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008251 499 DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (572)
Q Consensus 499 ~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~ 536 (572)
++|+..|++++.++|++..+...+..+...+++..++.
T Consensus 75 ~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi 112 (144)
T PRK15359 75 TTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAR 112 (144)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999988877766665544
No 57
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.92 E-value=1.5e-08 Score=116.04 Aligned_cols=116 Identities=5% Similarity=-0.038 Sum_probs=91.3
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (572)
..+...|..+.+.|++++|+..|.+++...|.+. .+++|+|.++..++++++|+..++++++++|
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~---------------~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNS---------------NYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3455667777777777777777777777766544 3477888888888899999999999999889
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008251 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (572)
Q Consensus 480 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~ 530 (572)
+++.+++++|.++..+|++++|+..|++++.++|++..+...+..+.....
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~ 725 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRF 725 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHH
Confidence 889999999999999999999999999999999988777777666544443
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.2e-08 Score=102.82 Aligned_cols=116 Identities=22% Similarity=0.197 Sum_probs=100.1
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHH
Q 008251 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (572)
Q Consensus 396 ~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al 475 (572)
...|..+.-+|..+|-.|++-.|...++.++.+.+..... |..+|..|+.+++-.+-..++++|.
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l---------------yI~~a~~y~d~~~~~~~~~~F~~A~ 387 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL---------------YIKRAAAYADENQSEKMWKDFNKAE 387 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH---------------HHHHHHHHhhhhccHHHHHHHHHHH
Confidence 4568889999999999999999999999999988765532 7789999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008251 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (572)
Q Consensus 476 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~ 528 (572)
.+||+|+..||.||+.++-+++|++|+++|++|++|+|+| +...+..|-..
T Consensus 388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~--~~~~iQl~~a~ 438 (606)
T KOG0547|consen 388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN--AYAYIQLCCAL 438 (606)
T ss_pred hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh--hHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 55555554333
No 59
>PRK15331 chaperone protein SicA; Provisional
Probab=98.92 E-value=1.2e-08 Score=90.05 Aligned_cols=103 Identities=14% Similarity=0.178 Sum_probs=92.3
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (572)
.+.....|-.+|.+|+|++|...|+-...+.+.+..+ ++.||.|+..+++|++|+..|..+..++
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y---------------~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~ 101 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDY---------------TMGLAAVCQLKKQFQKACDLYAVAFTLL 101 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4667888999999999999999999888776665443 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008251 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (572)
Q Consensus 479 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~ 517 (572)
++++...|+.|.||+.+++.+.|+.+|..++. .|.+..
T Consensus 102 ~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 102 KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDES 139 (165)
T ss_pred cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHH
Confidence 99999999999999999999999999999998 456543
No 60
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.91 E-value=3.3e-08 Score=95.93 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=98.9
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhc
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (572)
.+..+...|..++..|+|..|+..|++++...|.+.. ...+++++|.+++++++|+.|+..++++++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY------------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999998875432 2345789999999999999999999999999
Q ss_pred CCCCHH---HHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008251 478 DSRNVK---ALYRRAQAYIQM--------ADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (572)
Q Consensus 478 ~p~~~k---a~~~~g~a~~~l--------~~~~~A~~~~~~al~l~P~~~~~~~~l~ 523 (572)
+|+++. +++.+|.++..+ +++++|+..|+++++.+|++..+...+.
T Consensus 100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 998876 799999999987 8899999999999999999976554443
No 61
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.90 E-value=4.8e-09 Score=84.09 Aligned_cols=83 Identities=29% Similarity=0.380 Sum_probs=72.1
Q ss_pred cCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008251 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (572)
Q Consensus 412 ~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a 491 (572)
+++|+.|+..|+++++..+.+. ....++++|.||+++++|++|+..+++ ++.++.+....+.+|+|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-------------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-------------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC 67 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-------------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-------------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence 5899999999999999887521 123477899999999999999999999 88999999999999999
Q ss_pred HHhcCCHHHHHHHHHHH
Q 008251 492 YIQMADLDLAEFDIKKA 508 (572)
Q Consensus 492 ~~~l~~~~~A~~~~~~a 508 (572)
+.++++|++|+..|++|
T Consensus 68 ~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcC
Confidence 99999999999999875
No 62
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.9e-08 Score=99.55 Aligned_cols=130 Identities=16% Similarity=0.146 Sum_probs=110.7
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (572)
+..+.-.|.++...++-..|+..|.+|++++|.+..+ ++-+|++|.-++..-=|+-++++|+++.
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA---------------WYGLGQaYeim~Mh~YaLyYfqkA~~~k 428 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA---------------WYGLGQAYEIMKMHFYALYYFQKALELK 428 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH---------------HhhhhHHHHHhcchHHHHHHHHHHHhcC
Confidence 4456677888888888899999999999988877644 8899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008251 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (572)
Q Consensus 479 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f 544 (572)
|++...|--+|.||.++++.++|+++|++|+.....+..+.-.|+++.+.++..+++. +.|.+..
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa-~~yek~v 493 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA-QYYEKYV 493 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH-HHHHHHH
Confidence 9999999999999999999999999999999998888888888888888887766544 3444443
No 63
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.89 E-value=8.9e-09 Score=82.94 Aligned_cols=98 Identities=35% Similarity=0.451 Sum_probs=86.8
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008251 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (572)
Q Consensus 402 ~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (572)
+...|..++..|++..|+..|.++++..+... .+++++|.++...++++.|+.++++++...|.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 67 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA---------------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDN 67 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 56788899999999999999999998765432 347789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008251 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (572)
Q Consensus 482 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 514 (572)
..+++.+|.++...+++++|...+.++++..|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 68 AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999988874
No 64
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.87 E-value=2.3e-09 Score=112.69 Aligned_cols=101 Identities=23% Similarity=0.402 Sum_probs=86.8
Q ss_pred CCCCCCCEEEEEEEEEecCCCEEeecCCCCCceEEEcCCCccchhHHHHHcccccCcEEEEEecCCCccCCCCCCCCCCC
Q 008251 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP 130 (572)
Q Consensus 51 ~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~G~~~~~~g~e~al~gm~~Ge~~~i~ip~~~ayg~~~~~~~ip~ 130 (572)
..++.||.|.|+|+++. +|+.|+++.. .++.|.+|.+.+++||+++|.||++|++++|.++++.+|+..+. +
T Consensus 145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~~--~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----~ 216 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI-DGEAFEGGKA--ENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----A 216 (408)
T ss_pred cccCCCCEEEEEEEEEE-CCEECcCCCC--CCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----C
Confidence 46789999999999986 8999988753 78999999999999999999999999999999999999987664 6
Q ss_pred CCcEEEEEEEeEeeeccccccccceEEEE
Q 008251 131 NATLQFDVELLSWTSVKDICKDGGIIKKI 159 (572)
Q Consensus 131 ~~~l~~~v~l~~~~~~~~~~~d~~v~k~i 159 (572)
|.++.|.|+|.++........+..+++.+
T Consensus 217 gk~~~f~v~i~~I~~~~~peldDefak~~ 245 (408)
T TIGR00115 217 GKEATFKVTVKEVKEKELPELDDEFAKEL 245 (408)
T ss_pred CCeEEEEEEEEEeccCCCCCCCHHHHHhc
Confidence 79999999999998766555555555543
No 65
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2e-09 Score=111.81 Aligned_cols=141 Identities=23% Similarity=0.381 Sum_probs=113.8
Q ss_pred CCCCCCccCCCCCCCcCccCCcee---eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEecCCCEEeecCCCCCceEE
Q 008251 9 AANEMDADMDLPDDAPMMKVGEEK---EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKF 85 (572)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~ 85 (572)
+...+|++..++...|...+.++. .|..-.-...++.+-++ . ++.||.|+|+|.++. ||..|++... ..+.|
T Consensus 113 Pev~l~d~~~i~v~~~~~ev~d~dvd~~L~~l~~~~a~~~~~e~-~-a~~gD~v~IDf~g~i-Dg~~fegg~a--e~~~l 187 (441)
T COG0544 113 PEVELGDYKGIEVEKPVVEVTDEDVDEELEKLRKRFATLEPVEG-A-AENGDRVTIDFEGSV-DGEEFEGGKA--ENFSL 187 (441)
T ss_pred eceecCccccceeecCCcccCHHHHHHHHHHHHHhcCccccccc-c-cccCCEEEEEEEEEE-cCeeccCccc--cCeEE
Confidence 346788898999999988888554 12333334455555555 3 899999999999975 9999988864 57999
Q ss_pred EcCCCccchhHHHHHcccccCcEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeEeeeccccccccceEEEE
Q 008251 86 TLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKI 159 (572)
Q Consensus 86 ~~G~~~~~~g~e~al~gm~~Ge~~~i~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~d~~v~k~i 159 (572)
.||.|++||||+++|+||++|+++.|.+..+..|..... +|.+..|.|.|..+........+..+.+.+
T Consensus 188 ~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L-----aGK~a~F~V~vkeVk~~elpEldDEfAk~~ 256 (441)
T COG0544 188 ELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL-----AGKEATFKVKVKEVKKRELPELDDEFAKKL 256 (441)
T ss_pred EEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh-----CCCceEEEEEEEEEeecCCCCCCHHHHHhc
Confidence 999999999999999999999999999999888987665 679999999999999877776666666655
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.8e-08 Score=103.33 Aligned_cols=120 Identities=23% Similarity=0.205 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (572)
.+++.|...|..+.|.+|...|+.++...+..... . ..-...++|+|..+.|++.|.+||.+++++|.+.|.
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e---~-----~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE---K-----IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc---c-----cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 35566777777777777777777777444332110 0 012344789999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008251 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (572)
Q Consensus 481 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~ 528 (572)
++.++--.|.+|..+|+++.|++.|.+||-++|+|..+...|+.+-..
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998888888866443
No 67
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.85 E-value=8.1e-08 Score=88.00 Aligned_cols=110 Identities=18% Similarity=0.084 Sum_probs=92.2
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHH
Q 008251 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (572)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a 474 (572)
....+..+...|..++..|+|+.|+..|.+|+.+.+... ....+++|+|.++..++++++|+..|.++
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY------------DRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344678889999999999999999999999998754321 12346899999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHH-------hcCCHH-------HHHHHHHHHHHhCCCCH
Q 008251 475 LDLDSRNVKALYRRAQAYI-------QMADLD-------LAEFDIKKALEIDPDNR 516 (572)
Q Consensus 475 l~~~p~~~ka~~~~g~a~~-------~l~~~~-------~A~~~~~~al~l~P~~~ 516 (572)
+.++|.+..+++++|.+|. .+|+++ +|+..+++++.++|.+.
T Consensus 99 l~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 99 LERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9999999999999999998 777876 55666667788888874
No 68
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.85 E-value=2.6e-08 Score=109.88 Aligned_cols=124 Identities=5% Similarity=-0.024 Sum_probs=111.4
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhc
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (572)
.+..++..|......|+|++|...+..++.+.|.+.. ++.++|.++.+++++++|+..|++++..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~---------------a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE---------------AFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH---------------HHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 3667888999999999999999999999999887553 4889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008251 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (572)
Q Consensus 478 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~ 536 (572)
+|++..+++.+|.++.++|+|++|++.|++++..+|++..+...+..+.+.+.+..++.
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR 208 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999888888887777666555544
No 69
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.84 E-value=3.1e-09 Score=102.83 Aligned_cols=109 Identities=23% Similarity=0.260 Sum_probs=102.3
Q ss_pred ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHH
Q 008251 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL 470 (572)
Q Consensus 391 ~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~ 470 (572)
..++.+++|...+-++..++..|.|+.|+..|..|+.+.+.... +|.+++.++++++++..|+++
T Consensus 106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~---------------l~~kr~sv~lkl~kp~~airD 170 (377)
T KOG1308|consen 106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAI---------------LYAKRASVFLKLKKPNAAIRD 170 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhh---------------hcccccceeeeccCCchhhhh
Confidence 56788999999999999999999999999999999999887554 388999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008251 471 CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (572)
Q Consensus 471 ~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 514 (572)
|+.|++++|+..+-|-.++.++..+|+|++|..+|..|++++-+
T Consensus 171 ~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 171 CDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999755
No 70
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=2.2e-08 Score=95.79 Aligned_cols=100 Identities=27% Similarity=0.345 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008251 439 EKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (572)
Q Consensus 439 ~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~ 518 (572)
-....+.++ +-|.-+++.++|.+|+..|++||+++|+|+-.|.+||.||.+||+|+.|+++++.|+.+||....+
T Consensus 77 ~~~~AE~LK-----~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yska 151 (304)
T KOG0553|consen 77 DKALAESLK-----NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKA 151 (304)
T ss_pred HHHHHHHHH-----HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHH
Confidence 344444444 788889999999999999999999999999999999999999999999999999999999999777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008251 519 KLEYKTLKEKMKEYNKKEAKFYGNMF 544 (572)
Q Consensus 519 ~~~l~~l~~~~~~~~~~~~~~~~~~f 544 (572)
..-|..+...+.+..++... |++-.
T Consensus 152 y~RLG~A~~~~gk~~~A~~a-ykKaL 176 (304)
T KOG0553|consen 152 YGRLGLAYLALGKYEEAIEA-YKKAL 176 (304)
T ss_pred HHHHHHHHHccCcHHHHHHH-HHhhh
Confidence 77777776666666655543 44443
No 71
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.83 E-value=3.3e-08 Score=92.84 Aligned_cols=119 Identities=13% Similarity=0.068 Sum_probs=100.8
Q ss_pred cCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008251 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (572)
Q Consensus 412 ~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a 491 (572)
.++..+++..|.++++..|.+... ++++|.+|+.+++++.|+..|+++++++|+++.+++.+|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~---------------w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~a 116 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQ---------------WALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATV 116 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHH---------------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 567788888999999888776543 88999999999999999999999999999999999999998
Q ss_pred H-HhcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 008251 492 Y-IQMAD--LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (572)
Q Consensus 492 ~-~~l~~--~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~ 546 (572)
+ ...|+ +++|++.|+++++++|++..+...+..+...+.+.+++.. .|.++.+.
T Consensus 117 L~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~-~~~~aL~l 173 (198)
T PRK10370 117 LYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE-LWQKVLDL 173 (198)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH-HHHHHHhh
Confidence 5 67787 5999999999999999999999999888777666665553 44444433
No 72
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.83 E-value=1.9e-08 Score=78.17 Aligned_cols=71 Identities=25% Similarity=0.398 Sum_probs=65.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008251 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (572)
Q Consensus 454 la~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 524 (572)
|...|+..++|+.|+.++++++.++|+++.+++.+|.+|..+|++++|+.+|+++++.+|++..+......
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 35678999999999999999999999999999999999999999999999999999999999877665543
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=98.82 E-value=3.9e-08 Score=107.64 Aligned_cols=107 Identities=12% Similarity=-0.054 Sum_probs=52.8
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 008251 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (572)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k 483 (572)
..|..+...|++++|+..|++|+++.|.+.. +++++|.++..+|++++|+..++++++++|.++.
T Consensus 343 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------------a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~ 407 (553)
T PRK12370 343 LLGLINTIHSEYIVGSLLFKQANLLSPISAD---------------IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA 407 (553)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh
Confidence 4444455555555555555555555443322 2445555555555555555555555555555554
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Q 008251 484 ALYRRAQAYIQMADLDLAEFDIKKALEID-PDNRDVKLEYKTL 525 (572)
Q Consensus 484 a~~~~g~a~~~l~~~~~A~~~~~~al~l~-P~~~~~~~~l~~l 525 (572)
+++.++.+++.+|++++|+..+++++... |++..+...+..+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~ 450 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMF 450 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 44444444444555555555555555443 4444444444433
No 74
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.82 E-value=5.2e-09 Score=80.37 Aligned_cols=66 Identities=29% Similarity=0.384 Sum_probs=60.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcC-CHHHHHHHHHHHHhc
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDL 477 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~-~~~~Ai~~~~~al~~ 477 (572)
|..+...|..++..++|++|+..|++|+++.|.+. .+++|+|.||.+++ +|.+|+.++++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~---------------~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA---------------EAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH---------------HHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 67789999999999999999999999999987643 45999999999999 799999999999999
Q ss_pred CC
Q 008251 478 DS 479 (572)
Q Consensus 478 ~p 479 (572)
+|
T Consensus 68 ~P 69 (69)
T PF13414_consen 68 DP 69 (69)
T ss_dssp ST
T ss_pred Cc
Confidence 88
No 75
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.80 E-value=1.2e-07 Score=92.52 Aligned_cols=114 Identities=13% Similarity=0.082 Sum_probs=96.8
Q ss_pred hhhHHHHHHH-HHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008251 400 GKKKEQGNTL-FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (572)
Q Consensus 400 ~~~k~~G~~~-~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (572)
......+..+ ++.|+|.+|+..|+..++..|...- ...+++.+|.+|+..++|+.|+..+.+++...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~------------a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y 210 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY------------QPNANYWLGQLNYNKGKKDDAAYYFASVVKNY 210 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3445666666 6679999999999999999887542 23458899999999999999999999999988
Q ss_pred CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 479 SRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 479 p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
|++ +.+++++|.++..+|++++|+..|+++++..|++..+.....++
T Consensus 211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 874 78999999999999999999999999999999997665554444
No 76
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=3.7e-08 Score=98.80 Aligned_cols=119 Identities=19% Similarity=0.182 Sum_probs=108.4
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 008251 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (572)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k 483 (572)
--||-+--+++.+.|+..|++|++++|.... ++.-+|.-|..+++-..|+..|++|++++|.+-+
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALkLNp~~~~---------------aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR 399 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALKLNPKYLS---------------AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR 399 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHhcCcchhH---------------HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH
Confidence 3578888889999999999999999987554 3778999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008251 484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA 537 (572)
Q Consensus 484 a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~ 537 (572)
|||-+|++|.-++...-|+-+|++|+++-|+++.+...|+.|..++.+-.++.+
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999999999999999999999999999999999887766665553
No 77
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.80 E-value=6.7e-08 Score=90.86 Aligned_cols=120 Identities=15% Similarity=0.130 Sum_probs=108.7
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (572)
.+..+|..+++.|+|..|+..+.++....|.++.. ++-+|.+|.++|+++.|...|.+++++.|+
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~---------------~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~ 166 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA---------------WNLLGAALDQLGRFDEARRAYRQALELAPN 166 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh---------------hhHHHHHHHHccChhHHHHHHHHHHHhccC
Confidence 45559999999999999999999999999988866 789999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008251 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (572)
Q Consensus 481 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~ 535 (572)
++.++.|+|..|+-.|+++.|...+..+...-+.+..+..++..+......-..+
T Consensus 167 ~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 167 EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 9999999999999999999999999999999888999999988876655444433
No 78
>PRK12370 invasion protein regulator; Provisional
Probab=98.80 E-value=4.1e-08 Score=107.45 Aligned_cols=93 Identities=14% Similarity=0.071 Sum_probs=85.3
Q ss_pred cCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008251 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (572)
Q Consensus 412 ~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a 491 (572)
.+++.+|+..+++|+++.|.+.. ++.++|.++..++++++|+..|+++++++|+++.+++.+|.+
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~---------------a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 381 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQ---------------ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWN 381 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHH---------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45689999999999999887553 377899999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008251 492 YIQMADLDLAEFDIKKALEIDPDNRDVK 519 (572)
Q Consensus 492 ~~~l~~~~~A~~~~~~al~l~P~~~~~~ 519 (572)
|..+|++++|+..|+++++++|.+..+.
T Consensus 382 l~~~G~~~eAi~~~~~Al~l~P~~~~~~ 409 (553)
T PRK12370 382 LFMAGQLEEALQTINECLKLDPTRAAAG 409 (553)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCChhhH
Confidence 9999999999999999999999986553
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.79 E-value=1.8e-07 Score=89.39 Aligned_cols=117 Identities=21% Similarity=0.283 Sum_probs=89.1
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008251 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (572)
Q Consensus 402 ~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (572)
+...|..++..|+|++|+..|.+++...... .....+.++|.++...+++++|+..+.+++..+|++
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP-------------QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhccccc-------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 4455666666667777777776666532110 112347789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008251 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (572)
Q Consensus 482 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~ 531 (572)
..+++.+|.++..+|++++|+..+++++.+.|.+......+..+......
T Consensus 169 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 169 PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGD 218 (234)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999988886666555555444333
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.78 E-value=8e-08 Score=96.53 Aligned_cols=107 Identities=13% Similarity=-0.002 Sum_probs=90.1
Q ss_pred CcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008251 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY 492 (572)
Q Consensus 413 g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~ 492 (572)
...+.++..+.+++...+.+. ......|+++|.+|..+|++..|+..++++++++|+++.+|+.+|.+|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~-----------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 108 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTD-----------EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYL 108 (296)
T ss_pred hHHHHHHHHHHHHHccccCCc-----------HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 356788888988886544222 123456899999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008251 493 IQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (572)
Q Consensus 493 ~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~ 530 (572)
..+|++++|+..|+++++++|++..+...+..+....+
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 146 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGG 146 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999887777666544333
No 81
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.77 E-value=1.5e-07 Score=90.00 Aligned_cols=84 Identities=21% Similarity=0.255 Sum_probs=58.3
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008251 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLD--SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (572)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~--p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~ 527 (572)
++.+++.++...+++++|+..+.+++... +.....++.+|.++...|++++|...|.+++..+|++..+...+..+..
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 180 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYY 180 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHH
Confidence 45677777777777777777777777643 4456677777777888888888888888888877777666655555544
Q ss_pred HHHHHH
Q 008251 528 KMKEYN 533 (572)
Q Consensus 528 ~~~~~~ 533 (572)
...+..
T Consensus 181 ~~~~~~ 186 (234)
T TIGR02521 181 LRGQYK 186 (234)
T ss_pred HcCCHH
Confidence 444433
No 82
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.76 E-value=7.5e-08 Score=110.32 Aligned_cols=108 Identities=11% Similarity=0.100 Sum_probs=91.7
Q ss_pred CcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008251 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY 492 (572)
Q Consensus 413 g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~ 492 (572)
|++++|+..|.+++...|. ..+++|+|.++.+++++++|+..+.++++++|+++.+++++|.++
T Consensus 590 Gr~~eAl~~~~~AL~l~P~----------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS----------------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL 653 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5555555555555555442 245889999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008251 493 IQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (572)
Q Consensus 493 ~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~ 536 (572)
..+|++++|+..|++|++++|++..+...+..+...+.+..++.
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999988888877766655544
No 83
>PRK01490 tig trigger factor; Provisional
Probab=98.75 E-value=2.9e-08 Score=105.24 Aligned_cols=99 Identities=25% Similarity=0.445 Sum_probs=84.7
Q ss_pred CCCCCCEEEEEEEEEecCCCEEeecCCCCCceEEEcCCCccchhHHHHHcccccCcEEEEEecCCCccCCCCCCCCCCCC
Q 008251 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (572)
Q Consensus 52 ~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~G~~~~~~g~e~al~gm~~Ge~~~i~ip~~~ayg~~~~~~~ip~~ 131 (572)
.++.||.|.|+|+++. +|+.|+++.. .++.|.+|.+.+++||+++|.||++|++++|.++++..|+.... +|
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~--~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l-----ag 228 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGGKA--EDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL-----AG 228 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCCCC--CceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC-----CC
Confidence 5789999999999997 8988887753 68999999999999999999999999999999999999987664 67
Q ss_pred CcEEEEEEEeEeeeccccccccceEEE
Q 008251 132 ATLQFDVELLSWTSVKDICKDGGIIKK 158 (572)
Q Consensus 132 ~~l~~~v~l~~~~~~~~~~~d~~v~k~ 158 (572)
.++.|.|+|.++........+..+++.
T Consensus 229 k~~~f~v~v~~V~~~~~pel~Defak~ 255 (435)
T PRK01490 229 KEATFKVTVKEVKEKELPELDDEFAKK 255 (435)
T ss_pred CeEEEEEEEEEeccCCCCCCCHHHHHh
Confidence 999999999999876555555555543
No 84
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=1.7e-08 Score=104.02 Aligned_cols=98 Identities=16% Similarity=0.158 Sum_probs=91.8
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008251 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (572)
Q Consensus 402 ~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (572)
....|..|+-.++|++|+.+|+.||...|.+... ++.||+.+..-.+..+|+..|++||++.|+.
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~l---------------WNRLGAtLAN~~~s~EAIsAY~rALqLqP~y 497 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLL---------------WNRLGATLANGNRSEEAISAYNRALQLQPGY 497 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHH---------------HHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence 4468899999999999999999999999987654 8899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008251 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (572)
Q Consensus 482 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 514 (572)
+++.|++|.+++.+|-|.+|..+|-.||.+.+.
T Consensus 498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999876
No 85
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.74 E-value=2.7e-08 Score=76.08 Aligned_cols=67 Identities=31% Similarity=0.388 Sum_probs=61.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 459 ~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
++.|+|++|+..+++++..+|+|..+++.+|.||++.|++++|...+++++..+|+++.+...+.++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999998777776643
No 86
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.73 E-value=5.5e-08 Score=85.49 Aligned_cols=102 Identities=14% Similarity=0.016 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 008251 420 KRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLD 499 (572)
Q Consensus 420 ~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~ 499 (572)
..|.+++...|... ..++++|.++++.+++++|+..+++++..+|++..+++++|.++..+++++
T Consensus 4 ~~~~~~l~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~ 68 (135)
T TIGR02552 4 ATLKDLLGLDSEQL---------------EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYE 68 (135)
T ss_pred hhHHHHHcCChhhH---------------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 35667776655432 337799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008251 500 LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (572)
Q Consensus 500 ~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~ 536 (572)
+|+..|+++++++|++......++.+....++.+.+.
T Consensus 69 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 105 (135)
T TIGR02552 69 EAIDAYALAAALDPDDPRPYFHAAECLLALGEPESAL 105 (135)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999988888888877665555443
No 87
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.72 E-value=3.9e-07 Score=86.13 Aligned_cols=131 Identities=20% Similarity=0.242 Sum_probs=100.0
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhc
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (572)
.+..+...|..++..|+|..|+..|++.+...|...- ...+.+.+|.++++.++|..|+..+++.++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------------APQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999998876543 2445789999999999999999999999999
Q ss_pred CCCC---HHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 008251 478 DSRN---VKALYRRAQAYIQMAD-----------LDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNKKEAKFY 540 (572)
Q Consensus 478 ~p~~---~ka~~~~g~a~~~l~~-----------~~~A~~~~~~al~l~P~~~---~~~~~l~~l~~~~~~~~~~~~~~~ 540 (572)
.|++ ..|+|.+|.+++.+.+ ..+|+..|+..++.-|++. +++..+..|...+.+.+-.-.+.|
T Consensus 72 yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y 151 (203)
T PF13525_consen 72 YPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFY 151 (203)
T ss_dssp -TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 4799999999877643 3589999999999999985 455556666666655554444443
No 88
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.72 E-value=2.9e-07 Score=79.62 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=94.7
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (572)
+..+...|...++.|+|..|+..|+......|...-. ..+.++++-+|++.++|.+|+..+++-++++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya------------~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA------------EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3457888999999999999999999988776654322 3457799999999999999999999999999
Q ss_pred CCCH---HHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHhCCCCHHHHH
Q 008251 479 SRNV---KALYRRAQAYIQMAD---------------LDLAEFDIKKALEIDPDNRDVKL 520 (572)
Q Consensus 479 p~~~---ka~~~~g~a~~~l~~---------------~~~A~~~~~~al~l~P~~~~~~~ 520 (572)
|+|+ -|+|++|.+++.+.. ...|..+|++.++.-|++.-+..
T Consensus 78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 9885 699999999999987 88999999999999999865433
No 89
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.71 E-value=5.5e-07 Score=87.33 Aligned_cols=130 Identities=17% Similarity=0.240 Sum_probs=102.3
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (572)
+..+...|..+++.|+|..|+..|++++...|... ....+.+++|.+|+++++|..|+..+++.++.+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~------------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP------------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34577889999999999999999999998777542 233447799999999999999999999999999
Q ss_pred CCC---HHHHHHHHHHHHhcCC------------------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHH
Q 008251 479 SRN---VKALYRRAQAYIQMAD------------------LDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNK 534 (572)
Q Consensus 479 p~~---~ka~~~~g~a~~~l~~------------------~~~A~~~~~~al~l~P~~~---~~~~~l~~l~~~~~~~~~ 534 (572)
|++ ..|+|.+|.++..++. ..+|+..|++.++.-|+.. +++..+..|+.++.+.+-
T Consensus 100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL 179 (243)
T ss_pred cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 977 5789999999866641 2578899999999999985 455555566666655554
Q ss_pred HHHHHH
Q 008251 535 KEAKFY 540 (572)
Q Consensus 535 ~~~~~~ 540 (572)
.-.+.|
T Consensus 180 ~ia~~Y 185 (243)
T PRK10866 180 SVAEYY 185 (243)
T ss_pred HHHHHH
Confidence 444433
No 90
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.70 E-value=1.2e-07 Score=105.76 Aligned_cols=111 Identities=21% Similarity=0.168 Sum_probs=70.8
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHH----HHHHHHHHHhcCCC
Q 008251 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ----AEKLCTKVLDLDSR 480 (572)
Q Consensus 405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~----Ai~~~~~al~~~p~ 480 (572)
.|..++..|++++|+..|.+++...+.+. .+++++|.++..++++++ |+..|+++++++|+
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~---------------~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDGA---------------ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 45667778888888888888887655432 235566666666666654 56666666666666
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008251 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (572)
Q Consensus 481 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~ 530 (572)
++.+++.+|.++...|++++|+..|++++.++|++..+...+..+.....
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVG 332 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 66666666666666666666666666666666666655555555444433
No 91
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=9.3e-08 Score=100.13 Aligned_cols=121 Identities=18% Similarity=0.189 Sum_probs=73.5
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (572)
..+.-.|..|.++++|+.|.-+|++|++++|.+... ..-++..+.++++.++|+..+++|+-+||
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi---------------~~~~g~~~~~~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVI---------------LCHIGRIQHQLKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhH---------------HhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 345555556666666666666666666555544322 34456666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008251 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (572)
Q Consensus 480 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~ 535 (572)
.|+-.-|.+|..+..+++|++|+..|++.-++.|++..+..++.++.++++..+.+
T Consensus 555 kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 555 KNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred CCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHH
Confidence 66666666666666666666666666666666666666666666665555544433
No 92
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.65 E-value=2.4e-07 Score=103.20 Aligned_cols=109 Identities=11% Similarity=0.060 Sum_probs=89.6
Q ss_pred hhhHHHHHHHHHcCcHHH----HHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHH
Q 008251 400 GKKKEQGNTLFKAGKYAR----ASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~----A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al 475 (572)
..+...|..++..|++.+ |+..|++++...|.+. .++.++|.++.+++++++|+..+++++
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV---------------RIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445667888899999885 7899999998877543 347788999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008251 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (572)
Q Consensus 476 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~ 523 (572)
+++|+++.+++.+|.+|.++|++++|+..|++++..+|++......+.
T Consensus 312 ~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 312 ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 999999999999999999999999999999999999888755443333
No 93
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.63 E-value=8.3e-07 Score=86.04 Aligned_cols=125 Identities=11% Similarity=0.065 Sum_probs=101.0
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhc--------CCHHHHHHHH
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--------KDYKQAEKLC 471 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~--------~~~~~Ai~~~ 471 (572)
..+...|..+++.+++..|+..|+++++..|..... ..+++++|.|++++ ++++.|+..+
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~ 138 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF 138 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 456788999999999999999999999998876543 12467888888876 8899999999
Q ss_pred HHHHhcCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHH
Q 008251 472 TKVLDLDSRNVKAL-----------------YRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKE 531 (572)
Q Consensus 472 ~~al~~~p~~~ka~-----------------~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~---~~~~~l~~l~~~~~~ 531 (572)
++++..+|++..++ +.+|.+|+..|++++|+..|+++++..|+++ .+...+..+...+.+
T Consensus 139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence 99999999986442 4678999999999999999999999987753 566666666666555
Q ss_pred HHHHH
Q 008251 532 YNKKE 536 (572)
Q Consensus 532 ~~~~~ 536 (572)
..+..
T Consensus 219 ~~~A~ 223 (235)
T TIGR03302 219 KDLAQ 223 (235)
T ss_pred HHHHH
Confidence 54444
No 94
>PLN02789 farnesyltranstransferase
Probab=98.63 E-value=6.7e-07 Score=90.11 Aligned_cols=114 Identities=13% Similarity=-0.034 Sum_probs=95.6
Q ss_pred HhhhHHHHHHHHHcC-cHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCH--HHHHHHHHHHH
Q 008251 399 AGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY--KQAEKLCTKVL 475 (572)
Q Consensus 399 a~~~k~~G~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~--~~Ai~~~~~al 475 (572)
...+..+|..+...+ ++.+|+..+.+++...+.+... +++++.++.+++++ .+++..++++|
T Consensus 71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa---------------W~~R~~~l~~l~~~~~~~el~~~~kal 135 (320)
T PLN02789 71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI---------------WHHRRWLAEKLGPDAANKELEFTRKIL 135 (320)
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH---------------hHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence 445667777777777 5788888888888887765543 77888888888874 78899999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008251 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (572)
Q Consensus 476 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~ 527 (572)
+.+|.|..||+.|+.++..+++|++|++++.++++++|+|..+......+..
T Consensus 136 ~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~ 187 (320)
T PLN02789 136 SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT 187 (320)
T ss_pred HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888777766543
No 95
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.60 E-value=1.2e-07 Score=94.71 Aligned_cols=123 Identities=20% Similarity=0.198 Sum_probs=97.5
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (572)
+..+...|..+.+.|++++|++.|++|++..|.+.. +..+++.++...++++++...+.......
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~---------------~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD---------------ARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH---------------HHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------------HHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 445778899999999999999999999999887543 36678888999999999888888888888
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008251 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (572)
Q Consensus 479 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~ 536 (572)
|+++..+..+|.+|..+|++++|+.+|+++++.+|+|..+...+..+.......+++.
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------
T ss_pred cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 8888899999999999999999999999999999999999988888866666555444
No 96
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.59 E-value=4e-07 Score=80.16 Aligned_cols=88 Identities=11% Similarity=0.051 Sum_probs=80.5
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008251 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (572)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~ 529 (572)
..+.+|..++..|++++|...++.+..+||.+...||++|.|+..+|+|.+|+..|.+|+.++|+++....++..|.-.+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HHHHHHHH
Q 008251 530 KEYNKKEA 537 (572)
Q Consensus 530 ~~~~~~~~ 537 (572)
.+...+.+
T Consensus 117 G~~~~A~~ 124 (157)
T PRK15363 117 DNVCYAIK 124 (157)
T ss_pred CCHHHHHH
Confidence 66655543
No 97
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.59 E-value=1.1e-06 Score=104.50 Aligned_cols=126 Identities=21% Similarity=0.213 Sum_probs=101.8
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHH-HHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhc
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK-KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~-~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (572)
+..+...|..+++.|++++|+..|+++++..+...... .+ ..+......+..++|.++++.+++++|+..|+++++.
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~--~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD--KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh--HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44567889999999999999999999998877543221 11 1111122233457789999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008251 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (572)
Q Consensus 478 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~ 526 (572)
+|++..+++.+|.+|..+|++++|++.|+++++++|++..+...+..+.
T Consensus 381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987766665553
No 98
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.58 E-value=1.1e-06 Score=83.93 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=100.3
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (572)
....+.+..+++.|+|..|...|..-++..|...-. ..+++.|+.|++.+++|+.|...+..+.+-.|
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~------------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P 209 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT------------PNAYYWLGESLYAQGDYEDAAYIFARVVKDYP 209 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc------------chhHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence 348899999999999999999999999988876533 34689999999999999999999999999888
Q ss_pred CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 480 RN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 480 ~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
++ +.+++.+|.|..++++.++|...|+++++.-|....+...-..+
T Consensus 210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 76 57799999999999999999999999999999997665544433
No 99
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=5.5e-07 Score=89.39 Aligned_cols=133 Identities=19% Similarity=0.212 Sum_probs=103.6
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (572)
+.+++-+|.++|-..+.+.|+.+|+++|++.|...... ......-.....-+.|.-.++.|+|..|-+.|..+|.+|
T Consensus 203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk---~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 203 AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSK---SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHH---hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 56778889999999999999999999999887654221 111111233345588999999999999999999999999
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008251 479 SRN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (572)
Q Consensus 479 p~~----~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~ 534 (572)
|+| ++.|++||.++.++|+..+|+.+++.|++++|..-.+....++|...+.++..
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 975 78999999999999999999999999999999883333333444444544443
No 100
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.54 E-value=7.8e-07 Score=101.19 Aligned_cols=112 Identities=11% Similarity=0.042 Sum_probs=100.9
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (572)
..+...|..+...|++.+|+..|++++...|.+.. +++++|.++...+++++|+..++++++.+|
T Consensus 50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~---------------a~~~la~~l~~~g~~~eA~~~l~~~l~~~P 114 (765)
T PRK10049 50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD---------------YQRGLILTLADAGQYDEALVKAKQLVSGAP 114 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 34778899999999999999999999998776543 266999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008251 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (572)
Q Consensus 480 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~ 527 (572)
++.. ++.+|.++...|++++|+..|+++++++|++..+...+..+..
T Consensus 115 ~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 115 DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999 9999999999999999999999999999999888777666543
No 101
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.54 E-value=2.1e-06 Score=92.88 Aligned_cols=116 Identities=19% Similarity=0.208 Sum_probs=75.3
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCCh----------HHHHHHHHHHHHhH---------hhHHHHH
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD----------EEKKQAKALKVACN---------LNNAACK 458 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~----------e~~~~~~~~~~~~~---------~nla~~~ 458 (572)
.+.++..+||.+|.+|++++|...+..+++..|....... +..+-++.....++ .-+|...
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3778899999999999999999999999999887654311 11111111222222 2344444
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008251 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513 (572)
Q Consensus 459 ~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P 513 (572)
.++++++.|+-+|.+||+++|.|.+.+++++..|.++|++-.|...|.+.+.++|
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 4556666666666666666666666666666666666666666666666666666
No 102
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.54 E-value=1.1e-06 Score=104.62 Aligned_cols=126 Identities=20% Similarity=0.198 Sum_probs=101.2
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCCh-----------HHH-H---------------HHHHHHHHhHh
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-----------EEK-K---------------QAKALKVACNL 452 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-----------e~~-~---------------~~~~~~~~~~~ 452 (572)
..+...|..++..|++++|+..|+++++..|.+..... ++. . ....+....+.
T Consensus 386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 465 (1157)
T PRK11447 386 YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLA 465 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHH
Confidence 45667899999999999999999999988775432100 000 0 01122234567
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
++|.++...+++++|+..|+++++.+|+++.+++++|.+|..+|++++|+..|+++++++|++..+...+..+
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~ 538 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLY 538 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999998766554433
No 103
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.53 E-value=1.5e-06 Score=80.27 Aligned_cols=120 Identities=18% Similarity=0.197 Sum_probs=96.1
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhc
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (572)
.+..+.+-|..++.+|+|++|...|.+|+.. |.... ....+.|++.|.++.|+++.|.++++++|++
T Consensus 102 ~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~------------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 102 NGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGE------------PSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred ccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCC------------cchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 3456778888888888888888888888853 22111 1234779999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008251 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (572)
Q Consensus 478 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~ 530 (572)
+|+++-+...++..++..++|-.|...+++...--+-+.+...+.-++.+++.
T Consensus 169 dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~g 221 (250)
T COG3063 169 DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLG 221 (250)
T ss_pred CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998877766544444444444443
No 104
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.53 E-value=1.2e-06 Score=101.33 Aligned_cols=117 Identities=26% Similarity=0.315 Sum_probs=93.6
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHh
Q 008251 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (572)
Q Consensus 397 ~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (572)
..+..+...|..++..|+|++|+..|.++++..|.... +++.+|.+++..++|++|+..++++++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------~~~~la~~~~~~~~~~~A~~~~~~~~~ 187 (899)
T TIGR02917 123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY---------------AKLGLAQLALAENRFDEARALIDEVLT 187 (899)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh---------------hHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567788999999999999999999999988765432 366788888888888888888888888
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008251 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (572)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~ 528 (572)
.+|.+..+++.+|.++...|++++|+..|++++.++|++..+...+..+...
T Consensus 188 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 239 (899)
T TIGR02917 188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIE 239 (899)
T ss_pred hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888886665555554433
No 105
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.53 E-value=1.4e-06 Score=69.83 Aligned_cols=85 Identities=34% Similarity=0.442 Sum_probs=75.3
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008251 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (572)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~ 529 (572)
+++++|.++...+++++|+..+.++++..|++..+++.+|.++...+++++|+..|++++.+.|.+..+...+..+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 47799999999999999999999999999999999999999999999999999999999999999987766666665555
Q ss_pred HHHHH
Q 008251 530 KEYNK 534 (572)
Q Consensus 530 ~~~~~ 534 (572)
.+...
T Consensus 82 ~~~~~ 86 (100)
T cd00189 82 GKYEE 86 (100)
T ss_pred HhHHH
Confidence 54443
No 106
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.51 E-value=9.2e-07 Score=91.05 Aligned_cols=84 Identities=31% Similarity=0.362 Sum_probs=75.1
Q ss_pred HhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008251 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~ 530 (572)
+...|..++..++|..|+..|++||+++|+++.+|+++|.||..+|++++|+.++++|+.++|++..+...++.+...++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 44678999999999999999999999999999999999999999999999999999999999999888877777655554
Q ss_pred HHHH
Q 008251 531 EYNK 534 (572)
Q Consensus 531 ~~~~ 534 (572)
+...
T Consensus 85 ~~~e 88 (356)
T PLN03088 85 EYQT 88 (356)
T ss_pred CHHH
Confidence 4443
No 107
>PLN02789 farnesyltranstransferase
Probab=98.50 E-value=1.4e-06 Score=87.71 Aligned_cols=120 Identities=11% Similarity=0.085 Sum_probs=100.8
Q ss_pred HHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcC-CHHHHHHHHHHHHhcCCCCHHHHHH
Q 008251 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDSRNVKALYR 487 (572)
Q Consensus 409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~-~~~~Ai~~~~~al~~~p~~~ka~~~ 487 (572)
+...+++.+|+..+.++|.+.|.+.. ++++++.++.+++ ++++++..++++++.+|+|..+|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~yt---------------aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYT---------------VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHH---------------HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 55678899999999999999887654 4889999999998 6899999999999999999999999
Q ss_pred HHHHHHhcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008251 488 RAQAYIQMADL--DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (572)
Q Consensus 488 ~g~a~~~l~~~--~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f 544 (572)
|+.++.++++. ++++..++++++++|+|-.+....+-+...+...++ +-..+.++.
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e-eL~~~~~~I 169 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED-ELEYCHQLL 169 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH-HHHHHHHHH
Confidence 99999999974 788999999999999999888888777666655443 333444443
No 108
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.48 E-value=1.5e-06 Score=96.10 Aligned_cols=105 Identities=10% Similarity=-0.080 Sum_probs=96.5
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHH
Q 008251 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (572)
Q Consensus 396 ~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al 475 (572)
.+.+......++.+++.+++++|+..+.+++...|.+... ++++|.|..++|+|++|+..|++++
T Consensus 117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~---------------~~~~a~~l~~~g~~~~A~~~y~~~~ 181 (694)
T PRK15179 117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE---------------ILLEAKSWDEIGQSEQADACFERLS 181 (694)
T ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH---------------HHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4456778899999999999999999999999988876543 8899999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008251 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (572)
Q Consensus 476 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 515 (572)
..+|++++++..+|.++..+|+.++|...|++|+.....-
T Consensus 182 ~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 182 RQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 9999999999999999999999999999999999987654
No 109
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.48 E-value=2.8e-06 Score=88.95 Aligned_cols=66 Identities=23% Similarity=0.173 Sum_probs=46.9
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008251 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (572)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 515 (572)
.++++|.++++.+++++|+..++++++.+|++..+++.+|.+|.+.|++++|++.|++++..+|.+
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 355667777777777777777777777777777777777777777777777777777777766665
No 110
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.47 E-value=4.9e-07 Score=92.27 Aligned_cols=65 Identities=17% Similarity=0.056 Sum_probs=61.0
Q ss_pred HHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008251 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA---LYRRAQAYIQMADLDLAEFDIKKALEID 512 (572)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka---~~~~g~a~~~l~~~~~A~~~~~~al~l~ 512 (572)
...++|+|.+|+++++|++|+..|++||+++|++..+ ||++|.||..+|++++|+++|++|+++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3458899999999999999999999999999999865 9999999999999999999999999983
No 111
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.47 E-value=2.5e-06 Score=89.25 Aligned_cols=100 Identities=18% Similarity=0.112 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (572)
.+...|..+++.+++++|+..|.++++..+... .+++++|.++.+.+++++|+..++++++.+|.
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCV---------------RASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 345667777777888888888888777654322 12445555666666666666666666655554
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008251 481 N-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (572)
Q Consensus 481 ~-~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 515 (572)
+ ..++..++.+|...|++++|+..++++++..|++
T Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 282 (389)
T PRK11788 247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA 282 (389)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4 3345555556666666666666666666555554
No 112
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.46 E-value=1.4e-06 Score=100.67 Aligned_cols=83 Identities=20% Similarity=0.129 Sum_probs=56.1
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008251 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (572)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~ 529 (572)
++.+++..+.+.++ .+|+..+++++++.|+++..+..+|.++..+|++++|+..|+++++++|.+..+...+..+....
T Consensus 806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 806 VLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLAT 884 (899)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Confidence 35566677777766 66777777777777777777777777777777777777777777777777766666666555444
Q ss_pred HHHH
Q 008251 530 KEYN 533 (572)
Q Consensus 530 ~~~~ 533 (572)
....
T Consensus 885 g~~~ 888 (899)
T TIGR02917 885 GRKA 888 (899)
T ss_pred CCHH
Confidence 4433
No 113
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.45 E-value=2.3e-07 Score=70.25 Aligned_cols=64 Identities=20% Similarity=0.267 Sum_probs=56.4
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 008251 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482 (572)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ 482 (572)
.+|..+++.|+|++|+..|+++++..|.+. .+++.+|.|++.+|++++|+..++++++.+|+|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNP---------------EAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHH---------------HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 578999999999999999999998877533 4588999999999999999999999999999985
No 114
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.43 E-value=4.4e-07 Score=71.42 Aligned_cols=66 Identities=24% Similarity=0.270 Sum_probs=57.3
Q ss_pred HHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcC----CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008251 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD----SR---NVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (572)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~----p~---~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 511 (572)
....+++|+|.+|..+++|++|+.++++++++. ++ -+.+++++|.+|..+|++++|++.+++|+++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 346678999999999999999999999999752 22 3689999999999999999999999999976
No 115
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.43 E-value=2.1e-06 Score=78.64 Aligned_cols=110 Identities=12% Similarity=0.022 Sum_probs=87.9
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC---
Q 008251 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN--- 481 (572)
Q Consensus 405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~--- 481 (572)
+.+.+|-.+.|..+...+...++... ......+++++|.++..+++|++|+..+++++.+.|++
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 71 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILPTTS-------------GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR 71 (168)
T ss_pred cccccccccccccchhhhhHhccCCc-------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh
Confidence 44566666777777777755443221 12356678999999999999999999999999887653
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008251 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (572)
Q Consensus 482 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~ 527 (572)
+.+++++|.+|..+|++++|+..|++++.++|.+......+..+..
T Consensus 72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999877766666555
No 116
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=9e-07 Score=80.62 Aligned_cols=111 Identities=20% Similarity=0.114 Sum_probs=99.9
Q ss_pred cCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHH
Q 008251 388 WDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA 467 (572)
Q Consensus 388 ~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~A 467 (572)
-.++.++ .|.-+.++|+.+-..|-...|...|++++.+.|..++ +++.+|..+...++|+.|
T Consensus 57 ~~l~~ee---RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~---------------vfNyLG~Yl~~a~~fdaa 118 (297)
T COG4785 57 RALTDEE---RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE---------------VFNYLGIYLTQAGNFDAA 118 (297)
T ss_pred ccCChHH---HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH---------------HHHHHHHHHHhcccchHH
Confidence 3445554 4777889999988889999999999999999887554 488899999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008251 468 EKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (572)
Q Consensus 468 i~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 516 (572)
.+.++.++++||.+.-|..+||.++.--|+|.-|.++|.+...-||+++
T Consensus 119 ~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 119 YEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred HHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 9999999999999999999999999999999999999999999999997
No 117
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.39 E-value=3.1e-06 Score=96.28 Aligned_cols=108 Identities=11% Similarity=0.044 Sum_probs=97.5
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (572)
......|..+...|++++|+..+.+++...|.+. .+++++|.++...+++++|+..++++++++|
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~---------------~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P 424 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ---------------GLRIDYASVLQARGWPRAAENELKKAEVLEP 424 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence 3445778889999999999999999999887654 3488999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008251 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (572)
Q Consensus 480 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l 522 (572)
++..+++.+|.+++.++++++|...++++++..|++..+...-
T Consensus 425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~ 467 (765)
T PRK10049 425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLA 467 (765)
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999999999999999999999998665443
No 118
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.39 E-value=1.6e-06 Score=92.39 Aligned_cols=103 Identities=23% Similarity=0.195 Sum_probs=91.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHH--HHHHHHh
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK--LCTKVLD 476 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~--~~~~al~ 476 (572)
+..++..|..+..+|++.+|...|..|+.+.|.+... ...+|.|+++.|+-.-|.+ ....+++
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s---------------~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS---------------MTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH---------------HHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 4567888999999999999999999999998876643 6689999999998888888 8899999
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008251 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (572)
Q Consensus 477 ~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 516 (572)
+||.|.+|||.+|.++.++|+.+.|.++|+.|+++++.++
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999999998875
No 119
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.38 E-value=1.2e-06 Score=78.22 Aligned_cols=98 Identities=22% Similarity=0.230 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCHHH
Q 008251 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL----------KDYKQAEKLCTKVLDLDSRNVKA 484 (572)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~----------~~~~~Ai~~~~~al~~~p~~~ka 484 (572)
|+.|.+.|+.....+|.+.+. ++|-|.+++.+ ..+++|+.-+++||.++|+...|
T Consensus 7 FE~ark~aea~y~~nP~Dadn---------------L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA 71 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADN---------------LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA 71 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHH---------------HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHHHhCcHhHHH---------------HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 567888888877777765322 33444444333 45788999999999999999999
Q ss_pred HHHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008251 485 LYRRAQAYIQMAD-----------LDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (572)
Q Consensus 485 ~~~~g~a~~~l~~-----------~~~A~~~~~~al~l~P~~~~~~~~l~~l~~ 527 (572)
++.+|.||..++. |++|..+|++|..++|+|...+.-|....+
T Consensus 72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 9999999998865 789999999999999999888887776643
No 120
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.37 E-value=4.6e-06 Score=74.30 Aligned_cols=94 Identities=21% Similarity=0.206 Sum_probs=45.3
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008251 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (572)
Q Consensus 402 ~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (572)
....|..++..|+|++|+..|+.++...+. ..+...+.+++|.+++.+++|++|+..++.+ .-.+-.
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d------------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~ 117 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANAPD------------PELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFK 117 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchH
Confidence 344455555555555555555555543211 0122333445555555555555555555331 222223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008251 482 VKALYRRAQAYIQMADLDLAEFDIKKA 508 (572)
Q Consensus 482 ~ka~~~~g~a~~~l~~~~~A~~~~~~a 508 (572)
+.++..+|.+|.++|++++|+..|++|
T Consensus 118 ~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 118 ALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 444555555555555555555555554
No 121
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=7.4e-07 Score=89.01 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=99.3
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (572)
..+.++||..|..|+|+.|.+.|+.||.-... ...+++|++..+-++++.++|+.++-+.-.+--
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndas---------------c~ealfniglt~e~~~~ldeald~f~klh~il~ 555 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDAS---------------CTEALFNIGLTAEALGNLDEALDCFLKLHAILL 555 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchH---------------HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999964322 244588999999999999999999988777677
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008251 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (572)
Q Consensus 480 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~ 529 (572)
+|+..++.++..|.-+.+...|+++|-++-.+-|+++.+...|..+....
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQE 605 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc
Confidence 89999999999999999999999999999999999999988888775443
No 122
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.36 E-value=5.9e-06 Score=90.13 Aligned_cols=117 Identities=24% Similarity=0.256 Sum_probs=104.1
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (572)
.+.-.++.+|-+|+|..+...+..|+..... ..+....++++|.+|..+|+|++|..+|.+++..+++
T Consensus 272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d 339 (1018)
T KOG2002|consen 272 ALNHLANHFYFKKDYERVWHLAEHAIKNTEN------------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND 339 (1018)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhhhh------------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC
Confidence 4556788999999999999999999875422 2345556899999999999999999999999999999
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008251 481 N-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (572)
Q Consensus 481 ~-~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~ 529 (572)
| .-+++.+|+.|++.|+++.|+.+|+++++..|++.+....|+.+....
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 8 899999999999999999999999999999999999999999887665
No 123
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.36 E-value=4.6e-06 Score=71.07 Aligned_cols=96 Identities=17% Similarity=0.168 Sum_probs=76.5
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 008251 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLEYK 523 (572)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~---~~~~~~l~ 523 (572)
.++++|..+++.++|++|+..|.+++..+|++ ..+++.+|.++.+.+++++|+..|++++...|++ ..+...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 47899999999999999999999999999877 6899999999999999999999999999999986 34555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 008251 524 TLKEKMKEYNKKEAKFYGNMFAK 546 (572)
Q Consensus 524 ~l~~~~~~~~~~~~~~~~~~f~~ 546 (572)
.+........+.. ..+......
T Consensus 84 ~~~~~~~~~~~A~-~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAK-ATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHH-HHHHHHHHH
Confidence 5554444433333 344444444
No 124
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.35 E-value=8.5e-06 Score=86.14 Aligned_cols=146 Identities=23% Similarity=0.224 Sum_probs=113.8
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHH
Q 008251 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (572)
Q Consensus 396 ~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al 475 (572)
+..+..++..|+.|...++|.+|+..|++|+.+........ +...+.++.|||..|.+.|+|.+|..+|++|+
T Consensus 238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERAL 310 (508)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 44556667899999999999999999999999877543322 24466778999999999999999999999998
Q ss_pred hcCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHHHHHHHHHHH
Q 008251 476 DLDS--------RNVKALYRRAQAYIQMADLDLAEFDIKKALEID-----PDN---RDVKLEYKTLKEKMKEYNKKEAKF 539 (572)
Q Consensus 476 ~~~p--------~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~-----P~~---~~~~~~l~~l~~~~~~~~~~~~~~ 539 (572)
++-. .-...+.+.+..+..++++++|...+++++++- ++| ..++..|+.+...+++.++++ .+
T Consensus 311 ~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~-~~ 389 (508)
T KOG1840|consen 311 EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE-EL 389 (508)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH-HH
Confidence 8632 235678899999999999999999999999863 334 345666777777777777666 46
Q ss_pred HHhhhhcccC
Q 008251 540 YGNMFAKMSM 549 (572)
Q Consensus 540 ~~~~f~~~~~ 549 (572)
|++...+...
T Consensus 390 ~k~ai~~~~~ 399 (508)
T KOG1840|consen 390 YKKAIQILRE 399 (508)
T ss_pred HHHHHHHHHh
Confidence 6666655533
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=7.8e-06 Score=83.33 Aligned_cols=125 Identities=15% Similarity=0.053 Sum_probs=105.2
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (572)
....+.++...|..|+++.|...+...+...|.+..+ ...++..+++.++..+|++.+++++.++
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~---------------~~~~~~i~~~~nk~~~A~e~~~kal~l~ 370 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYY---------------LELAGDILLEANKAKEAIERLKKALALD 370 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 3456777888889999999999998877777754422 4467889999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008251 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538 (572)
Q Consensus 479 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~~ 538 (572)
|+..-..+++|.+|++.|++.+|+..++..+.-+|+++..+..|.+....+....+....
T Consensus 371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 999999999999999999999999999999999999999999999887776555444433
No 126
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.33 E-value=1.1e-06 Score=89.56 Aligned_cols=113 Identities=23% Similarity=0.125 Sum_probs=99.7
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhc---CCHHHHHH
Q 008251 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---KDYKQAEK 469 (572)
Q Consensus 393 ~e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~---~~~~~Ai~ 469 (572)
.+....++..+.+||..|-......|+..|.+++...+. ...+|.|+|.+++|. ++--.|+.
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~---------------~~~~l~nraa~lmkRkW~~d~~~Alr 432 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD---------------AIYLLENRAAALMKRKWRGDSYLALR 432 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc---------------hhHHHHhHHHHHHhhhccccHHHHHH
Confidence 566778999999999999999999999999999987664 345688999999986 57888999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008251 470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520 (572)
Q Consensus 470 ~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~ 520 (572)
+|-.|++++|...||+|+++.|+..++++.+|+.+...+....|.+.+...
T Consensus 433 Dch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~ 483 (758)
T KOG1310|consen 433 DCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQN 483 (758)
T ss_pred hHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhh
Confidence 999999999999999999999999999999999999988888897654433
No 127
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.32 E-value=8e-07 Score=67.82 Aligned_cols=67 Identities=33% Similarity=0.383 Sum_probs=58.2
Q ss_pred HHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 008251 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR 488 (572)
Q Consensus 409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~ 488 (572)
+++.|+|++|+..|++++...|.+.. +++++|.||++.|++++|...+.+++..+|+++.++.-+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~---------------~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPE---------------ARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHH---------------HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 47889999999999999999887543 377999999999999999999999999999988777666
Q ss_pred HH
Q 008251 489 AQ 490 (572)
Q Consensus 489 g~ 490 (572)
++
T Consensus 66 a~ 67 (68)
T PF14559_consen 66 AQ 67 (68)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 128
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=6.3e-06 Score=85.40 Aligned_cols=91 Identities=10% Similarity=0.072 Sum_probs=82.6
Q ss_pred HhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008251 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (572)
Q Consensus 449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~ 528 (572)
.++.-||..|...++|++|+.+++.||..+|++...|.|+|-.+..-.+..+|+..|++|++|.|....++..++....-
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN 510 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN 510 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh
Confidence 45677899999999999999999999999999999999999999999999999999999999999998888898888777
Q ss_pred HHHHHHHHHHH
Q 008251 529 MKEYNKKEAKF 539 (572)
Q Consensus 529 ~~~~~~~~~~~ 539 (572)
+..++++-+.+
T Consensus 511 lG~ykEA~~hl 521 (579)
T KOG1125|consen 511 LGAYKEAVKHL 521 (579)
T ss_pred hhhHHHHHHHH
Confidence 77777766543
No 129
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.30 E-value=6.5e-06 Score=75.67 Aligned_cols=82 Identities=17% Similarity=0.177 Sum_probs=71.9
Q ss_pred HHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008251 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (572)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~ 523 (572)
...+++++|.++...+++++|+.+|++++...|+. ..+++++|.+|..+|++++|+..|++++.+.|++......+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 45568999999999999999999999999887653 579999999999999999999999999999999987766666
Q ss_pred HHHHH
Q 008251 524 TLKEK 528 (572)
Q Consensus 524 ~l~~~ 528 (572)
.+...
T Consensus 114 ~~~~~ 118 (172)
T PRK02603 114 VIYHK 118 (172)
T ss_pred HHHHH
Confidence 65444
No 130
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=2.2e-06 Score=90.81 Aligned_cols=122 Identities=16% Similarity=0.236 Sum_probs=103.5
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (572)
+.+.+..|+..+.+++|++|.++++.++++.+-.. ..+++++.|.+++++++.|..+|.+.+.++
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~---------------~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQL---------------GTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccch---------------hHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 34456666777788999999999999998876433 448999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008251 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (572)
Q Consensus 479 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~ 535 (572)
|+|..+|.+++.+|..+++-.+|...+++|++-+-+|..+..++..+.........+
T Consensus 550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHH
Confidence 999999999999999999999999999999999988877777777666655555443
No 131
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.29 E-value=6.8e-06 Score=89.69 Aligned_cols=132 Identities=20% Similarity=0.208 Sum_probs=111.7
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (572)
+.+.+.|..+|..|+|..|...|..|+..+...... ++. +...+++.+|+|.|+-.++++..|...|..++..+|
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~--de~---~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp 527 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK--DEG---KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP 527 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc--ccc---ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc
Confidence 457889999999999999999999999874422111 111 233467789999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008251 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (572)
Q Consensus 480 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~ 536 (572)
..+.+|.|+|......++..+|..+++.++..+..|++++.+++.+.....++...+
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc
Confidence 999999999987888899999999999999999999999999998877766665544
No 132
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.28 E-value=4.6e-06 Score=65.57 Aligned_cols=73 Identities=25% Similarity=0.310 Sum_probs=61.0
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHh
Q 008251 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (572)
Q Consensus 397 ~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (572)
..+..+...|..++..|+|++|+..|++|+++...... .......++.|+|.|+..+|++++|+.+++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45778899999999999999999999999998544332 1234577899999999999999999999999997
Q ss_pred c
Q 008251 477 L 477 (572)
Q Consensus 477 ~ 477 (572)
+
T Consensus 75 i 75 (78)
T PF13424_consen 75 I 75 (78)
T ss_dssp H
T ss_pred h
Confidence 6
No 133
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.27 E-value=1e-05 Score=91.24 Aligned_cols=149 Identities=13% Similarity=0.028 Sum_probs=106.8
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCC-----------Ch-HH-HHHHHHH------HHHhHhhHHHHHH
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-----------GD-EE-KKQAKAL------KVACNLNNAACKL 459 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-----------~~-e~-~~~~~~~------~~~~~~nla~~~~ 459 (572)
+...+.++...+++|+|..|+..|.++++..|..... .. ++ ...++.. ....+..+|.++.
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 4467889999999999999999999999988876311 00 00 1111111 1222334477888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008251 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539 (572)
Q Consensus 460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~~~ 539 (572)
.+++|++|+..|+++++.+|+|+.+++.++.+|..++++++|++.++++...+|.+... ..+..+........ +....
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~-~AL~~ 191 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNY-DALQA 191 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHH-HHHHH
Confidence 89999999999999999999999999999999999999999999999999999997654 33333332222222 35667
Q ss_pred HHhhhhcccC
Q 008251 540 YGNMFAKMSM 549 (572)
Q Consensus 540 ~~~~f~~~~~ 549 (572)
|++++.....
T Consensus 192 ~ekll~~~P~ 201 (822)
T PRK14574 192 SSEAVRLAPT 201 (822)
T ss_pred HHHHHHhCCC
Confidence 7777766443
No 134
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=7.9e-06 Score=79.02 Aligned_cols=113 Identities=19% Similarity=0.152 Sum_probs=96.3
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhc---CCHHHHHHHHHHH
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---KDYKQAEKLCTKV 474 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~---~~~~~Ai~~~~~a 474 (572)
.++.+--.|..++..+++..|...|.+|+++.+.+... +.-+|.+++.. ..-.++...++++
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~---------------~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI---------------LLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 45678889999999999999999999999999876643 44555555544 3577899999999
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 475 l~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
+..||+|+.+++.+|..++..|+|.+|...++..+++.|.+..-+..+.+.
T Consensus 220 l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 220 LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 999999999999999999999999999999999999999987666665544
No 135
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.27 E-value=7e-06 Score=77.45 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=76.2
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008251 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (572)
Q Consensus 453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~ 532 (572)
-++..++..|+|..|+..+.++..++|++.++|.-+|.+|.++|++++|...|.+++++.|+++.+..++.-..-.....
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 48888999999999999999999999999999999999999999999999999999999999999998888765555555
Q ss_pred HHHHH
Q 008251 533 NKKEA 537 (572)
Q Consensus 533 ~~~~~ 537 (572)
+.+++
T Consensus 185 ~~A~~ 189 (257)
T COG5010 185 EDAET 189 (257)
T ss_pred HHHHH
Confidence 54443
No 136
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.23 E-value=3.5e-06 Score=88.72 Aligned_cols=84 Identities=17% Similarity=0.291 Sum_probs=73.0
Q ss_pred CCCCCCeEEEEEEEEeCCCeEeeec--cceEEEeCCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008251 168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV 245 (572)
Q Consensus 168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~~~~~~~~~~~i 245 (572)
.+..||.|+++|.+.. +|+.++++ .++.|.+|.+.+++||+++|.||++|+++++.+|....|+..+.
T Consensus 146 ~~~~gD~V~v~~~~~~-dg~~~~~~~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~--------- 215 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI-DGEAFEGGKAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL--------- 215 (408)
T ss_pred ccCCCCEEEEEEEEEE-CCEECcCCCCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC---------
Confidence 4678999999999976 78888765 78899999999999999999999999999999986657765433
Q ss_pred CCCCeEEEEEEEecccc
Q 008251 246 PPNATLQIALELVSWKT 262 (572)
Q Consensus 246 p~~~~l~~~v~l~~~~~ 262 (572)
+|.++.|.|.|.++..
T Consensus 216 -~gk~~~f~v~i~~I~~ 231 (408)
T TIGR00115 216 -AGKEATFKVTVKEVKE 231 (408)
T ss_pred -CCCeEEEEEEEEEecc
Confidence 6899999999999865
No 137
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.23 E-value=6e-06 Score=63.91 Aligned_cols=70 Identities=23% Similarity=0.301 Sum_probs=62.4
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 008251 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL 485 (572)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~ 485 (572)
.+.+++.++|+.|+..+++++.+.|.+... ++++|.|+.++|+|.+|+.+++++++.+|++..+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---------------~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPEL---------------WLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchh---------------hHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 357899999999999999999998886654 88999999999999999999999999999998887
Q ss_pred HHHHH
Q 008251 486 YRRAQ 490 (572)
Q Consensus 486 ~~~g~ 490 (572)
.-++.
T Consensus 67 ~~~a~ 71 (73)
T PF13371_consen 67 ALRAM 71 (73)
T ss_pred HHHHh
Confidence 65553
No 138
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.13 E-value=4.6e-06 Score=66.67 Aligned_cols=76 Identities=30% Similarity=0.410 Sum_probs=66.0
Q ss_pred cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008251 461 LKDYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA 537 (572)
Q Consensus 461 ~~~~~~Ai~~~~~al~~~p~--~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~ 537 (572)
.++|+.|+..++++++.+|. +...++++|.||+++|+|++|+..+++ ++.+|.+..+...+++|...+.+.+++..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57899999999999999995 577888999999999999999999999 88999988888888888888877777654
No 139
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.12 E-value=4.1e-05 Score=65.20 Aligned_cols=98 Identities=18% Similarity=0.005 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (572)
.+++.|..+-..|+.++|+..|.+|+..-... ..+..++.++|.++..+|++++|+..+++++...|+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~------------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSG------------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 46788889999999999999999999842211 123456889999999999999999999999998887
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008251 481 ---NVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (572)
Q Consensus 481 ---~~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 510 (572)
+.....-.+.++..+|++++|+.++-.++.
T Consensus 71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778888899999999999999999988774
No 140
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.11 E-value=2.1e-05 Score=78.42 Aligned_cols=139 Identities=22% Similarity=0.285 Sum_probs=98.1
Q ss_pred HHHHhhhHHHHHHHHHc-CcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHH
Q 008251 396 IEAAGKKKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (572)
Q Consensus 396 ~~~a~~~k~~G~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a 474 (572)
...|..+...|..+... ++++.|+..|++|+++...... ......++.++|.++.++++|++|+..|+++
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---------PHSAAECLLKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34567778888888888 8999999999999998775442 2345677889999999999999999999999
Q ss_pred HhcCCC------CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008251 475 LDLDSR------NVK-ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (572)
Q Consensus 475 l~~~p~------~~k-a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f 544 (572)
....-+ +++ .+++.+.|++.++++..|...|++....+|.... ..+..-+...+...+..+...|....
T Consensus 182 ~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~-s~E~~~~~~l~~A~~~~D~e~f~~av 257 (282)
T PF14938_consen 182 AKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS-SREYKFLEDLLEAYEEGDVEAFTEAV 257 (282)
T ss_dssp HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT-SHHHHHHHHHHHHHHTT-CCCHHHHC
T ss_pred HHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 875322 233 5678999999999999999999999999986432 22223334444444444444444333
No 141
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.11 E-value=5.4e-05 Score=77.34 Aligned_cols=110 Identities=19% Similarity=0.141 Sum_probs=96.1
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 008251 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (572)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k 483 (572)
..+..+++.++..+|++.+++++...|... .+..|+|+.+++.|++.+|+..++..+..+|+++.
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~l~P~~~---------------~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~ 409 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALALDPNSP---------------LLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN 409 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCcc---------------HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence 457788899999999999999999988753 34779999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008251 484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (572)
Q Consensus 484 a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~ 528 (572)
.|..+|++|..+|+-.+|...+...+.+..+-..+...+.+++++
T Consensus 410 ~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 410 GWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999888888887776666666655444
No 142
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=7e-06 Score=79.27 Aligned_cols=133 Identities=14% Similarity=0.090 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCC-----------ChHHHH-----HHH---HHHHHhHhhHHHHHHhc
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-----------GDEEKK-----QAK---ALKVACNLNNAACKLKL 461 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-----------~~e~~~-----~~~---~~~~~~~~nla~~~~k~ 461 (572)
-+...+..+-..++++.|++.|+.+++..+.+.+. ...|.. .+- .....+++|+|.|++--
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ya 371 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYA 371 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh
Confidence 34456666667778888888888888876654321 111111 111 12345789999999999
Q ss_pred CCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008251 462 KDYKQAEKLCTKVLDLDS---RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (572)
Q Consensus 462 ~~~~~Ai~~~~~al~~~p---~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~ 533 (572)
++|+-++..+.+|+..-. .....||++|.+....|++.-|..+|+-||.-||++.++..+|..+..+.....
T Consensus 372 qQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 372 QQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDIL 446 (478)
T ss_pred cchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchH
Confidence 999999999999998643 347899999999999999999999999999999999999999988866544433
No 143
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.08 E-value=5.7e-06 Score=53.50 Aligned_cols=34 Identities=41% Similarity=0.614 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008251 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (572)
Q Consensus 482 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 515 (572)
+++|+++|.+|..++++++|+.+|++|++++|+|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678888888888888888888888888888864
No 144
>PRK01490 tig trigger factor; Provisional
Probab=98.07 E-value=1.9e-05 Score=83.76 Aligned_cols=84 Identities=15% Similarity=0.283 Sum_probs=71.8
Q ss_pred CCCCCCeEEEEEEEEeCCCeEeeec--cceEEEeCCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008251 168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV 245 (572)
Q Consensus 168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~~~~~~~~~~~i 245 (572)
.+..||.|+++|.+.. +|+.++++ .++.|.+|.+.+++||+++|.||+.|+++.|.++....|+...
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~---------- 225 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGGKAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAED---------- 225 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCCCCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcccccccc----------
Confidence 4689999999999998 77777754 7889999999999999999999999999999997555675443
Q ss_pred CCCCeEEEEEEEecccc
Q 008251 246 PPNATLQIALELVSWKT 262 (572)
Q Consensus 246 p~~~~l~~~v~l~~~~~ 262 (572)
.+|.++.|.|.|.++..
T Consensus 226 lagk~~~f~v~v~~V~~ 242 (435)
T PRK01490 226 LAGKEATFKVTVKEVKE 242 (435)
T ss_pred CCCCeEEEEEEEEEecc
Confidence 36788999999999764
No 145
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.06 E-value=0.00015 Score=64.52 Aligned_cols=110 Identities=18% Similarity=0.137 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccC-------CCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHH
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-------~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~ 473 (572)
.+...|......++...++..|.+++.+..... .+.......++.....+...++.++...++++.|+..|.+
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 445567777788899999999999998764321 2233566778888888999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008251 474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (572)
Q Consensus 474 al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 510 (572)
++..+|.+..++..+-.+|..+|+..+|+..|+++.+
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988753
No 146
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.05 E-value=7.8e-05 Score=76.93 Aligned_cols=116 Identities=11% Similarity=-0.019 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCC-------------Ch--HHHHHHH-------HHHHHhHhhHHHHH
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GD--EEKKQAK-------ALKVACNLNNAACK 458 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~--e~~~~~~-------~~~~~~~~nla~~~ 458 (572)
...-+|..++..|++..|+..+.++++..|.+... .. ....... ......+.++|.++
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence 34567889999999999999999999887754311 00 0000000 11123456888999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008251 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (572)
Q Consensus 459 ~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 516 (572)
..+|++++|+..|+++++++|+++.++..+|.+|...|++++|+..+++++...|.+.
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~ 182 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS 182 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc
Confidence 9999999999999999999999999999999999999999999999999999988543
No 147
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.05 E-value=5.7e-05 Score=84.60 Aligned_cols=129 Identities=15% Similarity=0.074 Sum_probs=87.6
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHH---------
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL--------- 470 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~--------- 470 (572)
..+-...+.+...+++++|+.....+++..|....+ |+.+|..++..++++.+...
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~---------------yy~~G~l~~q~~~~~~~~lv~~l~~~~~~ 96 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA---------------LYISGILSLSRRPLNDSNLLNLIDSFSQN 96 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh---------------HHHHHHHHHhhcchhhhhhhhhhhhcccc
Confidence 345556667778999999999999999988876544 44455555554444333332
Q ss_pred --------HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008251 471 --------CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGN 542 (572)
Q Consensus 471 --------~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 542 (572)
+...+...+++-.|++.+|.||-++|++++|.+.++++++++|+|..+...++...... ...+...++++
T Consensus 97 ~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~K 174 (906)
T PRK14720 97 LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYLKK 174 (906)
T ss_pred cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHHHH
Confidence 22222224555589999999999999999999999999999999988888887765555 23333344444
Q ss_pred hhh
Q 008251 543 MFA 545 (572)
Q Consensus 543 ~f~ 545 (572)
...
T Consensus 175 AV~ 177 (906)
T PRK14720 175 AIY 177 (906)
T ss_pred HHH
Confidence 433
No 148
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.02 E-value=5e-05 Score=85.79 Aligned_cols=113 Identities=8% Similarity=-0.020 Sum_probs=91.2
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 008251 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL 485 (572)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~ 485 (572)
|..+...|+|+.|+..|+++++..|.+... ++-++..|...+++++|+..+.+++..+|.+...
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~---------------l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~- 172 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDL---------------ISGMIMTQADAGRGGVVLKQATELAERDPTVQNY- 172 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---------------HHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-
Confidence 456677899999999999999998876432 5577999999999999999999999999986554
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008251 486 YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (572)
Q Consensus 486 ~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~ 534 (572)
..++..+..++++.+|++.|+++++++|++.++...+-.+....+....
T Consensus 173 l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~ 221 (822)
T PRK14574 173 MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEP 221 (822)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHH
Confidence 4445556567888779999999999999998887777666555544433
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.01 E-value=0.00018 Score=64.03 Aligned_cols=128 Identities=19% Similarity=0.123 Sum_probs=95.3
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHH
Q 008251 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (572)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~ 473 (572)
.+...+..........+..++...+...+...+.-.+... ....+.+.+|.+++..++|++|+..++.
T Consensus 6 ~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~------------ya~~A~l~lA~~~~~~g~~~~A~~~l~~ 73 (145)
T PF09976_consen 6 QQAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP------------YAALAALQLAKAAYEQGDYDEAKAALEK 73 (145)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh------------HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3455677778888888889999998888888777655431 2345578899999999999999999999
Q ss_pred HHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008251 474 VLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (572)
Q Consensus 474 al~~~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~ 534 (572)
++...|+. ..+.+|+|.+++..++|++|+..++.. .-.+-...+...++.+.....+..+
T Consensus 74 ~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~ 136 (145)
T PF09976_consen 74 ALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDE 136 (145)
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHH
Confidence 99987655 568999999999999999999999762 2222233455555555554444443
No 150
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.00 E-value=7.8e-05 Score=80.17 Aligned_cols=118 Identities=17% Similarity=0.052 Sum_probs=90.1
Q ss_pred HhhhHHHHHHHHHcCc---HHHHHHHHHHHHHHhhccCCC--------------C---hHHHHHHHHH------------
Q 008251 399 AGKKKEQGNTLFKAGK---YARASKRYEKAVKYIEYDTSF--------------G---DEEKKQAKAL------------ 446 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~---~~~A~~~y~~al~~~~~~~~~--------------~---~e~~~~~~~~------------ 446 (572)
|-.+.-+|..++.+.+ +..|+.+|++|++..|..... . ......+...
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~ 418 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV 418 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence 4456666777766544 889999999999987764211 1 1111111111
Q ss_pred HHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008251 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (572)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~ 517 (572)
...+|.-+|..++..+++++|...+++|++++| +..+|+.+|+++...|++++|++.|++|+.++|.++.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 114466778888889999999999999999999 5789999999999999999999999999999999863
No 151
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.97 E-value=7.7e-06 Score=52.77 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=31.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008251 470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEF 503 (572)
Q Consensus 470 ~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~ 503 (572)
.|++||+++|+|+.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999973
No 152
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.97 E-value=0.00019 Score=75.65 Aligned_cols=124 Identities=18% Similarity=0.189 Sum_probs=79.0
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHH
Q 008251 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (572)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a 474 (572)
+.+.+.....+|...+..|+|..|.+...++.+..+... ..++-.|.++..+|+++.|..++.++
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~---------------~~~llaA~aa~~~g~~~~A~~~l~~a 144 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPV---------------LNLIKAAEAAQQRGDEARANQHLEEA 144 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555778888999999999999999999999887654321 11334455556666666666666666
Q ss_pred HhcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008251 475 LDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (572)
Q Consensus 475 l~~~p~~~-ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~ 533 (572)
.+..|++. .+...++..++..++++.|...+++.++..|+|+.+...+..+....++++
T Consensus 145 ~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 145 AELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 66555553 333334666666666666666666666666666655555555544444443
No 153
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.97 E-value=0.00016 Score=70.23 Aligned_cols=144 Identities=19% Similarity=0.173 Sum_probs=106.3
Q ss_pred cccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhc----------cCCCChHHHHH-------------
Q 008251 386 ESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY----------DTSFGDEEKKQ------------- 442 (572)
Q Consensus 386 ~~~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~----------~~~~~~e~~~~------------- 442 (572)
++.+++.+++. ..+.+.|..|+..|-|++|...|....+.-.. ....+ -+|++
T Consensus 97 ~spdlT~~qr~---lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~t-reW~KAId~A~~L~k~~~ 172 (389)
T COG2956 97 ESPDLTFEQRL---LALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQAT-REWEKAIDVAERLVKLGG 172 (389)
T ss_pred cCCCCchHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHcCC
Confidence 34456666654 45678899999999999999998775542110 00000 01111
Q ss_pred --HHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHH
Q 008251 443 --AKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-RDVK 519 (572)
Q Consensus 443 --~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~-~~~~ 519 (572)
.+-..+..|+.+|+.++...+++.|+....+|++.+|+++.|-..+|.+++..|+|+.|++.++.+++.||+. .++.
T Consensus 173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 1223456788999999999999999999999999999999999999999999999999999999999999997 3555
Q ss_pred HHHHHHHHHHHHHH
Q 008251 520 LEYKTLKEKMKEYN 533 (572)
Q Consensus 520 ~~l~~l~~~~~~~~ 533 (572)
..|..|...+.+-.
T Consensus 253 ~~L~~~Y~~lg~~~ 266 (389)
T COG2956 253 EMLYECYAQLGKPA 266 (389)
T ss_pred HHHHHHHHHhCCHH
Confidence 55666655554333
No 154
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.97 E-value=1.5e-05 Score=77.48 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=60.4
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008251 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (572)
Q Consensus 453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 515 (572)
..|.-|+|+|.|++||.+|.+++..+|.|+-.+.+||.||+++..|..|..+|..|+.|+...
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y 164 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY 164 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 689999999999999999999999999999999999999999999999999999999998665
No 155
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.97 E-value=7.6e-05 Score=79.03 Aligned_cols=110 Identities=25% Similarity=0.229 Sum_probs=93.3
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHH
Q 008251 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (572)
Q Consensus 396 ~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al 475 (572)
...|..+.+.|..|++.|+|++|..++++|+++......... .-....++|++..+..+++|+.|+.++.+++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~-------~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASH-------PEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCh-------HHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 457888999999999999999999999999999876333322 2344568899999999999999999999998
Q ss_pred hcC-----CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008251 476 DLD-----SR---NVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (572)
Q Consensus 476 ~~~-----p~---~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 512 (572)
++- +. -++.+-++|.+|+.+|+|++|.+.|++|+...
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 752 23 36888999999999999999999999999875
No 156
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.96 E-value=4e-05 Score=76.45 Aligned_cols=122 Identities=22% Similarity=0.190 Sum_probs=90.6
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008251 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (572)
Q Consensus 402 ~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (572)
+......++..+++..+...+.++........ ...+++.+|.++.+.|++++|+..++++++++|++
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~ 179 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEELPAAPD-------------SARFWLALAEIYEQLGDPDKALRDYRKALELDPDD 179 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-T---T--------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 44455567888999999999888774322111 23457889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008251 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (572)
Q Consensus 482 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~ 536 (572)
..++..++.++...|++++|...++...+..|.++.+...+..+...+.+.+++-
T Consensus 180 ~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al 234 (280)
T PF13429_consen 180 PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEAL 234 (280)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccc
Confidence 9999999999999999999999999998888888777777877777666555443
No 157
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.96 E-value=9.9e-05 Score=75.75 Aligned_cols=73 Identities=21% Similarity=0.237 Sum_probs=63.6
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHH
Q 008251 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (572)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~ 473 (572)
.....+..+.+.|+.|++.|+|++|+..|++||++.|.+... ..+|+|+|.||.+++++++|+.++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA------------~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA------------QAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345567889999999999999999999999999998875421 13489999999999999999999999
Q ss_pred HHhcC
Q 008251 474 VLDLD 478 (572)
Q Consensus 474 al~~~ 478 (572)
|+++.
T Consensus 138 ALels 142 (453)
T PLN03098 138 ALRDY 142 (453)
T ss_pred HHHhc
Confidence 99973
No 158
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.95 E-value=0.0002 Score=75.12 Aligned_cols=126 Identities=17% Similarity=0.177 Sum_probs=91.8
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHH
Q 008251 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (572)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~ 473 (572)
-+.+.+.....+|...+..|+|+.|.+...++-+..+. + ...++..|....++|+++.|..++.+
T Consensus 79 rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p--------------~l~~llaA~aA~~~g~~~~A~~~l~~ 143 (398)
T PRK10747 79 RKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-P--------------VVNYLLAAEAAQQRGDEARANQHLER 143 (398)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-h--------------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 35567788889999999999999999666665443111 0 11133445555888888888888888
Q ss_pred HHhcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008251 474 VLDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (572)
Q Consensus 474 al~~~p~~~-ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~ 534 (572)
+.+.+|++. -.....+..+...|+++.|.+.++++.+.+|+|..+...+..+....+++++
T Consensus 144 A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 144 AAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 888888874 3334568888888888888888888888888888877777776665555544
No 159
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=6.3e-05 Score=77.89 Aligned_cols=117 Identities=16% Similarity=0.158 Sum_probs=88.8
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCC----
Q 008251 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS---- 479 (572)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p---- 479 (572)
-.|..+.+.+++..|-..|.+|+.+.|.++- ++..+|.+.+..+.|.+|+.+++.+++.-+
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~ai~P~Dpl---------------v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~ 449 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQALAIAPSDPL---------------VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN 449 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCcch---------------hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence 3455555556666666666666666665543 266899999999999999999999994322
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008251 480 ---RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (572)
Q Consensus 480 ---~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~ 535 (572)
...-.+.++|.+|.+++.|++|+..|++||.+.|.+..+..-++-+...+..-+.+
T Consensus 450 e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~A 508 (611)
T KOG1173|consen 450 EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKA 508 (611)
T ss_pred cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHH
Confidence 12345789999999999999999999999999999998888887776666544443
No 160
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.94 E-value=2.9e-05 Score=83.55 Aligned_cols=124 Identities=31% Similarity=0.468 Sum_probs=108.2
Q ss_pred ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhc--CCHHHHH
Q 008251 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--KDYKQAE 468 (572)
Q Consensus 391 ~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~--~~~~~Ai 468 (572)
+.+.-+..+...+++||.+|++++|..|.-.|..++.++|.+.. ....++.|.+.||+.+ ++|..++
T Consensus 45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~-----------~~a~~~~~~~s~~m~~~l~~~~~~~ 113 (748)
T KOG4151|consen 45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHH-----------VVATLRSNQASCYMQLGLGEYPKAI 113 (748)
T ss_pred chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccch-----------hhhhHHHHHHHHHhhcCccchhhhc
Confidence 55667888999999999999999999999999999999985432 2456688999999875 6899999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 469 KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 469 ~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
..|+-|+...|...+++++|+.+|..++.++-|.+++.-....+|++.++...+.++
T Consensus 114 ~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~el 170 (748)
T KOG4151|consen 114 PECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEEL 170 (748)
T ss_pred CchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999996655544443
No 161
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.94 E-value=2.1e-05 Score=50.66 Aligned_cols=34 Identities=41% Similarity=0.560 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008251 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (572)
Q Consensus 482 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 515 (572)
+++++++|.+|..+|++++|+++|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678888888888888888888888888888875
No 162
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.92 E-value=0.00069 Score=64.40 Aligned_cols=130 Identities=21% Similarity=0.251 Sum_probs=101.0
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (572)
+..+.++|...++.|+|..|++.|+......|...- ...+.+.++.+++|.++|+.|+...++=+.+.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~------------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY------------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc------------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 566889999999999999999999998866554332 13456789999999999999999999999999
Q ss_pred CCC---HHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 008251 479 SRN---VKALYRRAQAYIQMAD--------LDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNKKEAKFY 540 (572)
Q Consensus 479 p~~---~ka~~~~g~a~~~l~~--------~~~A~~~~~~al~l~P~~~---~~~~~l~~l~~~~~~~~~~~~~~~ 540 (572)
|++ .-++|.+|.+++..=+ -.+|...|+..+..-|+.+ ++...+..++..+...+-.-.+.|
T Consensus 102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY 177 (254)
T COG4105 102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYY 177 (254)
T ss_pred CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877 4688899999776532 3588899999999999975 555556656555555554444443
No 163
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.92 E-value=0.00014 Score=76.73 Aligned_cols=137 Identities=15% Similarity=0.048 Sum_probs=104.0
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhc
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (572)
........|..+...|+++.|.....++++..+.+.... ...-+....+..++...++..++++++.
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~-------------~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS-------------LPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch-------------hHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 445566788899999999999999999999877654320 0112333344567889999999999999
Q ss_pred CCCCH--HHHHHHHHHHHhcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 008251 478 DSRNV--KALYRRAQAYIQMADLDLAEFDIK--KALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMSM 549 (572)
Q Consensus 478 ~p~~~--ka~~~~g~a~~~l~~~~~A~~~~~--~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~ 549 (572)
+|+++ ..+..+|..++++++|++|.++|+ ++++.+|++... ..+..+...+.+.+++ .+.|++-...+..
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~-~~La~ll~~~g~~~~A-~~~~~~~l~~~~~ 402 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL-AMAADAFDQAGDKAEA-AAMRQDSLGLMLA 402 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH-HHHHHHHHHcCCHHHH-HHHHHHHHHHHhc
Confidence 99999 888899999999999999999999 688899988664 4777777766654444 4556655444433
No 164
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.91 E-value=7.8e-05 Score=76.96 Aligned_cols=98 Identities=15% Similarity=0.044 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (572)
.+...|..+...|+|.+|...|+++++..|.+.. ++.++|.+++..|++++|+.++++++...|.
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~---------------~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW---------------AVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH---------------HHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 3456788899999999999999999998877542 3779999999999999999999999998874
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008251 481 N----VKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513 (572)
Q Consensus 481 ~----~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P 513 (572)
+ ...++.+|.++..+|++++|+..|++++...|
T Consensus 181 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 181 SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 3 24677899999999999999999999987777
No 165
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=7.4e-05 Score=72.36 Aligned_cols=99 Identities=18% Similarity=0.124 Sum_probs=77.0
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 008251 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482 (572)
Q Consensus 403 k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ 482 (572)
.+.|.+|++.|-+.+|...++.+|+..+. +..++.++.+|.+..+...|+..+.+.++..|.++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~----------------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V 290 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH----------------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV 290 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc----------------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh
Confidence 36799999999999999999999986553 22366777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008251 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (572)
Q Consensus 483 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~ 517 (572)
..+...|++|..++++++|.+.|+.+++++|.|-+
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE 325 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE 325 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce
Confidence 77777777777777777777777777777776644
No 166
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.86 E-value=9.1e-05 Score=52.81 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008251 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (572)
Q Consensus 483 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~ 530 (572)
..+|.+|.++.++|+|++|+.+++.+|+++|+|..+..+...+..+++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence 468899999999999999999999999999999988888777766554
No 167
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.86 E-value=0.00024 Score=77.37 Aligned_cols=97 Identities=20% Similarity=0.187 Sum_probs=81.1
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (572)
.-++..+...-+.|++.+|.-+|.+|+...|.++.. ..+++..|.++|++..|+..+.++++++|
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~---------------~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWEL---------------IYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHH---------------HHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 456677777778888999999999999988876543 77999999999999999999999999999
Q ss_pred C----CHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008251 480 R----NVKAL-YRRAQAYIQMADLDLAEFDIKKALEI 511 (572)
Q Consensus 480 ~----~~ka~-~~~g~a~~~l~~~~~A~~~~~~al~l 511 (572)
. ...+. ++.++.+...++-+.|++.+..++..
T Consensus 273 ~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 273 PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 3 23333 45599999999999999999999983
No 168
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.86 E-value=0.00011 Score=77.14 Aligned_cols=117 Identities=15% Similarity=0.073 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (572)
.++.+....|..++|...+...+..|+..+...+. +...|.....+|+-++|...+..++..|+.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHges---------------lAmkGL~L~~lg~~~ea~~~vr~glr~d~~ 73 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGES---------------LAMKGLTLNCLGKKEEAYELVRLGLRNDLK 73 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchh---------------HHhccchhhcccchHHHHHHHHHHhccCcc
Confidence 46677788899999999999999888866654432 445667777788888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008251 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (572)
Q Consensus 481 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~ 532 (572)
..-+|.-.|..+..-.+|++|+++|+.|+.++|+|..+..-+..++..++..
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence 8888888888888888888888888888888888877777777666655543
No 169
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00029 Score=70.47 Aligned_cols=125 Identities=18% Similarity=0.148 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHH---------HHHHHHHHHH----------hHhhHHHHHHhc
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEE---------KKQAKALKVA----------CNLNNAACKLKL 461 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~---------~~~~~~~~~~----------~~~nla~~~~k~ 461 (572)
-+-+.|..+|..|++.+|+..|+++..+.|.....-++. .+....+-.. -++--+...+..
T Consensus 234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~ 313 (564)
T KOG1174|consen 234 LMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDE 313 (564)
T ss_pred HHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhh
Confidence 456789999999999999999999998877654321110 1111111111 122234455667
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 462 ~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
++|..|+.+..++|+.+|.+..+|..+|.++.++++.++|+-.|+.|..+.|..-++..-|-.+
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS 377 (564)
T ss_pred hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999986665555443
No 170
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.82 E-value=0.00021 Score=70.02 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=73.4
Q ss_pred HhHhhHHHHH-HhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 008251 449 ACNLNNAACK-LKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLE 521 (572)
Q Consensus 449 ~~~~nla~~~-~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~---~~~~~ 521 (572)
...++.|.++ ++.++|++|+..|+..+...|++ +.++|++|.+|+..|+|++|+..|+++++..|++. ++...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3467888876 66799999999999999999988 58999999999999999999999999999999864 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 008251 522 YKTLKEKMKEYNKKEAKFYGNMFAK 546 (572)
Q Consensus 522 l~~l~~~~~~~~~~~~~~~~~~f~~ 546 (572)
+..+...+.+.. +-+..|......
T Consensus 223 lg~~~~~~g~~~-~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTA-KAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHH-HHHHHHHHHHHH
Confidence 454544333222 223444444433
No 171
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.81 E-value=4.9e-05 Score=52.35 Aligned_cols=41 Identities=29% Similarity=0.381 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008251 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (572)
Q Consensus 483 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~ 523 (572)
.+++.+|.+|..+|++++|++.|+++++.+|+|..++..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 45666666666666666666666666666666665555544
No 172
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.80 E-value=0.00016 Score=77.31 Aligned_cols=99 Identities=18% Similarity=0.159 Sum_probs=79.7
Q ss_pred HHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
...-+++.+|++|..+|++++|+.++++||+..|+.+..|+.+|++|-+.|++.+|.++++.|..+|+.++-+.....+.
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy 271 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999996555444433
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 008251 526 KEKMKEYNKKEAKFYGNMFAK 546 (572)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~f~~ 546 (572)
.++..+-.++..--.+|.+
T Consensus 272 --~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 272 --LLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred --HHHCCCHHHHHHHHHhhcC
Confidence 3333344444444455544
No 173
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.80 E-value=0.00027 Score=60.22 Aligned_cols=86 Identities=19% Similarity=0.098 Sum_probs=70.7
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 008251 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD---NRDVKLEYK 523 (572)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~---~~~~~~~l~ 523 (572)
+++++|.++-.+|+.++|+..|++++....+. ..++..+|.+|..+|++++|+..|++++...|+ +..+...+.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 47899999999999999999999999975443 689999999999999999999999999999888 666665555
Q ss_pred HHHHHHHHHHHH
Q 008251 524 TLKEKMKEYNKK 535 (572)
Q Consensus 524 ~l~~~~~~~~~~ 535 (572)
.+.....+.++.
T Consensus 83 l~L~~~gr~~eA 94 (120)
T PF12688_consen 83 LALYNLGRPKEA 94 (120)
T ss_pred HHHHHCCCHHHH
Confidence 554444444433
No 174
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=4.1e-05 Score=79.98 Aligned_cols=82 Identities=18% Similarity=0.366 Sum_probs=67.0
Q ss_pred CCCCCeEEEEEEEEeCCCeEeeec--cceEEEeCCCCCcchHHHHHhhccCCcEEEEEec-CCCccCCCCCCCCCCCCCC
Q 008251 169 PKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK-PQYGFGEKGKSASGNEGAV 245 (572)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp-~~~~~g~~~~~~~~~~~~i 245 (572)
+..||.|+|+|.+.. ||..|... +.+.+++|+|+++|||+.+|.||+.|+...|.|. |+ .|....
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~-dy~a~~---------- 225 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGGKAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPE-DYHAEE---------- 225 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCccccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEccc-ccchhH----------
Confidence 889999999999966 77777654 8899999999999999999999999999998664 32 344332
Q ss_pred CCCCeEEEEEEEecccc
Q 008251 246 PPNATLQIALELVSWKT 262 (572)
Q Consensus 246 p~~~~l~~~v~l~~~~~ 262 (572)
.+|.+..|.|.|..+..
T Consensus 226 LaGK~a~F~V~vkeVk~ 242 (441)
T COG0544 226 LAGKEATFKVKVKEVKK 242 (441)
T ss_pred hCCCceEEEEEEEEEee
Confidence 36777899999988765
No 175
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.79 E-value=0.00013 Score=77.81 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=74.9
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008251 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (572)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~ 529 (572)
+...+|...+..++|.+|..+++..++++|-....||++|.|.+++++++.|..+|.++..++|+|.++.+++..+..++
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~ 566 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL 566 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH
Confidence 34455555566799999999999999999999999999999999999999999999999999999999999998876666
Q ss_pred HHHHHH
Q 008251 530 KEYNKK 535 (572)
Q Consensus 530 ~~~~~~ 535 (572)
.+..++
T Consensus 567 ~~k~ra 572 (777)
T KOG1128|consen 567 KKKKRA 572 (777)
T ss_pred hhhHHH
Confidence 554443
No 176
>PRK11906 transcriptional regulator; Provisional
Probab=97.77 E-value=0.00019 Score=73.80 Aligned_cols=100 Identities=15% Similarity=0.078 Sum_probs=75.0
Q ss_pred cHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCHHH
Q 008251 414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---------KDYKQAEKLCTKVLDLDSRNVKA 484 (572)
Q Consensus 414 ~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~---------~~~~~Ai~~~~~al~~~p~~~ka 484 (572)
....|+..|.+|+...+.++.+ ..+|.-+|.||+.. .+-.+|+....+|+++||.++.|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~------------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a 340 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLK------------TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKI 340 (458)
T ss_pred HHHHHHHHHHHHhhcccCCccc------------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHH
Confidence 3567888899999333322221 23466666666654 24567888888899999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 485 LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 485 ~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
++.+|.++...++++.|...|++|+.++|+...+...+..+
T Consensus 341 ~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~ 381 (458)
T PRK11906 341 LAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV 381 (458)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 99999999989999999999999999999988777776654
No 177
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.76 E-value=3.2e-05 Score=49.93 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=29.9
Q ss_pred HhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008251 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (572)
Q Consensus 449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (572)
.+++++|.||+.+++|++|+.+|++||+++|+|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468999999999999999999999999999974
No 178
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.76 E-value=0.00011 Score=75.66 Aligned_cols=89 Identities=20% Similarity=0.261 Sum_probs=53.8
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 008251 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL 485 (572)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~ 485 (572)
+..++..++-.+|++...+++...|.+. .++...|..+++.++|+.|+..+++++++.|++.++|
T Consensus 207 A~v~l~~~~E~~AI~ll~~aL~~~p~d~---------------~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W 271 (395)
T PF09295_consen 207 ARVYLLMNEEVEAIRLLNEALKENPQDS---------------ELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETW 271 (395)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHH
Confidence 3344444555556666666554444321 2244556666666777777777777777777777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 008251 486 YRRAQAYIQMADLDLAEFDIKKAL 509 (572)
Q Consensus 486 ~~~g~a~~~l~~~~~A~~~~~~al 509 (572)
+.+|.||..+|+|++|+..+..+-
T Consensus 272 ~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 272 YQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777776655443
No 179
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.00031 Score=63.59 Aligned_cols=95 Identities=22% Similarity=0.256 Sum_probs=70.9
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-
Q 008251 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNV-----KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK- 526 (572)
Q Consensus 453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~~-----ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~- 526 (572)
--|.-+++.|+|.+|...|..||+++|... -.|.+||.|+++++.++.|+.++.+|++|+|.+ .+.+.+++.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty--~kAl~RRAea 177 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY--EKALERRAEA 177 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh--HHHHHHHHHH
Confidence 456778899999999999999999999753 467799999999999999999999999999998 444444443
Q ss_pred -HHHHHHHHHHHHHHHhhhhcccCC
Q 008251 527 -EKMKEYNKKEAKFYGNMFAKMSMF 550 (572)
Q Consensus 527 -~~~~~~~~~~~~~~~~~f~~~~~~ 550 (572)
..+...+. .-.-|+++.......
T Consensus 178 yek~ek~ee-aleDyKki~E~dPs~ 201 (271)
T KOG4234|consen 178 YEKMEKYEE-ALEDYKKILESDPSR 201 (271)
T ss_pred HHhhhhHHH-HHHHHHHHHHhCcch
Confidence 33322222 223466666554443
No 180
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.74 E-value=0.00032 Score=70.22 Aligned_cols=111 Identities=13% Similarity=0.187 Sum_probs=91.2
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCC---ChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHH
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---GDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~---~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al 475 (572)
.+.....|..+|++++|..|+-.|..||+++...... ...+...+-.+..-+.-.+..||+++++.+.|+.+.-+.|
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence 3444677889999999999999999999998764321 1223344555555667789999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008251 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (572)
Q Consensus 476 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al 509 (572)
.++|.+..-+.|.|.|+..+.+|.+|-..+--|.
T Consensus 256 ~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 256 NLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988775554
No 181
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.73 E-value=0.00057 Score=56.46 Aligned_cols=108 Identities=17% Similarity=0.205 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhc---
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL--- 477 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~--- 477 (572)
.....|...+..|-|.+|...|.+|.+.....+. ++.-.-.-.-..||.-|+.++..+++|++++....++|.+
T Consensus 11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~---eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIPA---EEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-T---TS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCh---HhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 3456778888999999999999999998665432 2222333445667889999999999999999999999864
Q ss_pred ----CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008251 478 ----DSR----NVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (572)
Q Consensus 478 ----~p~----~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 511 (572)
+.+ ...+-|++|.++..+|+.++|+..|+++-+.
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 333 3567789999999999999999999988653
No 182
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.00071 Score=63.71 Aligned_cols=138 Identities=21% Similarity=0.167 Sum_probs=100.9
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCC-------------ChHHHHHHHHHH------HHhHhhHHHHHHhcC
Q 008251 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAKALK------VACNLNNAACKLKLK 462 (572)
Q Consensus 402 ~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~e~~~~~~~~~------~~~~~nla~~~~k~~ 462 (572)
.+-.|..+-..|+|++|++.|...+.-.|.+... +.+-.+.++.+. ..++..+|..|+..+
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG 168 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence 3456777888899999999999988776654322 222233333332 235678999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008251 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA---DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539 (572)
Q Consensus 463 ~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~---~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~~~ 539 (572)
+|.+|.-++++++-+.|.|+-.+-|+|..++-+| +++-|+++|.++++++|.|..+...+-.|-..+.+.-+.+.+.
T Consensus 169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~~~k~ 248 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKAELKR 248 (289)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 9999999999999999999999999999988766 5778999999999999977555555555555555554444444
No 183
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.70 E-value=4.7e-05 Score=75.77 Aligned_cols=111 Identities=16% Similarity=0.248 Sum_probs=87.5
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHH
Q 008251 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (572)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~ 473 (572)
.+..+...+=+.||.||-.|+|+.|+..-+.-|.+....-. +.....++.|+|.||.-+++|+.|+++|.+
T Consensus 190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---------RAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---------HHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 35555667788999999999999999999988877554321 112334688999999999999999999998
Q ss_pred HHhc----CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008251 474 VLDL----DSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513 (572)
Q Consensus 474 al~~----~p~--~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P 513 (572)
++.+ -.. .+...|.+|.+|.-+.++++|+.++.+-|.+.-
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7654 222 356679999999999999999999998877653
No 184
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.00086 Score=63.14 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=74.5
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcC---CHHHHHHHHHHH
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEKLCTKV 474 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~---~~~~Ai~~~~~a 474 (572)
..+.+.+.+..|+..++|..|.-+|++.+-..|..+ .++..+|..++-++ ++..|..+|.++
T Consensus 153 D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~---------------l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 153 DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP---------------LYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 346788999999999999999999999998777644 33667888888765 788999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008251 475 LDLDSRNVKALYRRAQAYIQMADLDLAE 502 (572)
Q Consensus 475 l~~~p~~~ka~~~~g~a~~~l~~~~~A~ 502 (572)
++++|.+..++|.+-.|..++-+...+.
T Consensus 218 lkl~~~~~ral~GI~lc~~~la~~sk~~ 245 (289)
T KOG3060|consen 218 LKLNPKNLRALFGIYLCGSALAQISKAE 245 (289)
T ss_pred HHhChHhHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999988887766555444
No 185
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=1.8e-05 Score=73.62 Aligned_cols=80 Identities=28% Similarity=0.489 Sum_probs=69.9
Q ss_pred cCCCeEEEEEEcccCCCCC--CCCCEEEEEEEEEec--CCCEEeecCCCCCceEEEcCCCccchhHHHHHcccccCcEEE
Q 008251 35 GNQGLKKKLVKEGEGWDTP--ENGDEVEVHYTGTLL--DGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110 (572)
Q Consensus 35 ~~~g~~~~~~~~G~G~~~~--~~gd~V~v~y~~~~~--~g~~~~~t~~~~~p~~~~~G~~~~~~g~e~al~gm~~Ge~~~ 110 (572)
.-.||.++|+..|.| +-| ..|..|.+||..... .++++|+|+.-|+|+.+++|.---++-||..|..|+++|.+.
T Consensus 8 ~~~gv~Kril~~G~g-~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Evaq 86 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTG-ELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQ 86 (329)
T ss_pred cchhhhHhhccCCCc-cCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHH
Confidence 457899999999999 554 589999999988665 357999999889999999999888999999999999999988
Q ss_pred EEecC
Q 008251 111 FTIPP 115 (572)
Q Consensus 111 i~ip~ 115 (572)
|.|.-
T Consensus 87 F~~d~ 91 (329)
T KOG0545|consen 87 FWCDT 91 (329)
T ss_pred hhhhh
Confidence 87654
No 186
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.66 E-value=0.0013 Score=64.06 Aligned_cols=108 Identities=17% Similarity=0.156 Sum_probs=94.6
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHH
Q 008251 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (572)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a 474 (572)
+.+.|.-+-+.+..+....+++.|.....+|+...+....+ -..+|.+++..|+|..|++.+..+
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA---------------si~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRA---------------SIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceeh---------------hhhhhHHHHhccchHHHHHHHHHH
Confidence 45567778888888999999999999999999888765543 447899999999999999999999
Q ss_pred HhcCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008251 475 LDLDSRN-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (572)
Q Consensus 475 l~~~p~~-~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~ 517 (572)
++.||.. +..+-.+..||.++|+.++.+..+.++.+..+....
T Consensus 241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 9999987 578889999999999999999999999999887643
No 187
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.64 E-value=0.0001 Score=50.72 Aligned_cols=42 Identities=29% Similarity=0.241 Sum_probs=39.2
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008251 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (572)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a 491 (572)
+++.+|.+|..+|++++|+..++++++.+|+|+.+++.+|.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 477999999999999999999999999999999999998863
No 188
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=9.1e-05 Score=68.83 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=66.6
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008251 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (572)
Q Consensus 453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~ 528 (572)
.-+.+++.-+.|..|+..|.+||.++|+.+..|-++|.||+++++|+.+..++++|++++|+......-++.+...
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 4567777889999999999999999999999999999999999999999999999999999986655555554333
No 189
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.60 E-value=0.00091 Score=70.22 Aligned_cols=124 Identities=15% Similarity=0.143 Sum_probs=95.1
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhc
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (572)
........+..+...|+.+.|.....++++. +.+.. .-+...++..+++++++..+++.++.
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~-----------------l~~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDER-----------------LVLLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHH-----------------HHHHHhhccCCChHHHHHHHHHHHhh
Confidence 3445566788899999999999999999873 22110 01222233459999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008251 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYG 541 (572)
Q Consensus 478 ~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 541 (572)
+|+++..++-.|..+++.++|++|++.|+++++++|++.. ...+..+.....+.++.. ..|+
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~-~~~~ 385 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAA-AMRR 385 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHH-HHHH
Confidence 9999999999999999999999999999999999999855 346777766665544443 3444
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0013 Score=63.85 Aligned_cols=117 Identities=17% Similarity=0.066 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 008251 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ 494 (572)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~ 494 (572)
.+..+...+.-+..+|.+... +.-||.+|+.++++..|...|.+|+++.|+|+..+.-.|.+++.
T Consensus 138 ~~~l~a~Le~~L~~nP~d~eg---------------W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~ 202 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEG---------------WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYY 202 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchh---------------HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 455566666777777776655 67899999999999999999999999999999999999999887
Q ss_pred cCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 008251 495 MAD---LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547 (572)
Q Consensus 495 l~~---~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~ 547 (572)
..+ -.+|...|++++++||.|..+..+|........++.++ ...+..|.+.+
T Consensus 203 ~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A-~~~Wq~lL~~l 257 (287)
T COG4235 203 QAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEA-AAAWQMLLDLL 257 (287)
T ss_pred hcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHH-HHHHHHHHhcC
Confidence 654 56899999999999999977777777554433333322 23344555443
No 191
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.57 E-value=0.00039 Score=69.34 Aligned_cols=106 Identities=25% Similarity=0.215 Sum_probs=82.8
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHH
Q 008251 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (572)
Q Consensus 396 ~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al 475 (572)
...+..+..-|+.+-..++|.+|.+.|.+|.++...... ......+|.+.+.||.+. ++..|+.++++|+
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~---------~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~ 101 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD---------KFEAAKAYEEAANCYKKG-DPDEAIECYEKAI 101 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH
Confidence 345667777888888899999999999999988765332 123455677888888776 9999999999998
Q ss_pred hcC--CCC----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHh
Q 008251 476 DLD--SRN----VKALYRRAQAYIQM-ADLDLAEFDIKKALEI 511 (572)
Q Consensus 476 ~~~--p~~----~ka~~~~g~a~~~l-~~~~~A~~~~~~al~l 511 (572)
++. .++ .+++.++|.+|... +++++|++.|++|+.+
T Consensus 102 ~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 863 222 68999999999998 9999999999999987
No 192
>PRK15331 chaperone protein SicA; Provisional
Probab=97.55 E-value=0.00073 Score=60.05 Aligned_cols=84 Identities=12% Similarity=-0.098 Sum_probs=73.4
Q ss_pred HhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008251 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~ 530 (572)
.+..|.-++..|+|++|...+.-+..+||.|.+.++.+|.|+..+++|++|+..|-.|..++++|+........|...++
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 55788888999999999999999999999999999999999999999999999999999999998876666666655554
Q ss_pred HHHH
Q 008251 531 EYNK 534 (572)
Q Consensus 531 ~~~~ 534 (572)
+...
T Consensus 120 ~~~~ 123 (165)
T PRK15331 120 KAAK 123 (165)
T ss_pred CHHH
Confidence 4333
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.53 E-value=0.0033 Score=59.32 Aligned_cols=114 Identities=14% Similarity=0.106 Sum_probs=86.2
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhc-----------CCHHHHH
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----------KDYKQAE 468 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~-----------~~~~~Ai 468 (572)
......|..+|+.++|..|+..|++.++..|..... ..+++.+|.|++++ .....|+
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~ 110 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA------------DYALYMLGLSYYKQIPGILRSDRDQTSTRKAI 110 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH------------HHHHHHHHHHHHHHHHHHH-TT---HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch------------hhHHHHHHHHHHHhCccchhcccChHHHHHHH
Confidence 456788999999999999999999999998876643 33466677776654 3356899
Q ss_pred HHHHHHHhcCCCCH-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 469 KLCTKVLDLDSRNV-----------------KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 469 ~~~~~al~~~p~~~-----------------ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
..++..++..|++. .--+..|.-|++.+.|..|+.-|+.+++.-|+.......+..+
T Consensus 111 ~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l 184 (203)
T PF13525_consen 111 EEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARL 184 (203)
T ss_dssp HHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 99999999999863 1224678899999999999999999999999987655544443
No 194
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.49 E-value=0.00052 Score=75.49 Aligned_cols=134 Identities=14% Similarity=0.084 Sum_probs=99.5
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCC---------hHHHHHHH------------HHHHHhHhhHHHHHH
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG---------DEEKKQAK------------ALKVACNLNNAACKL 459 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~---------~e~~~~~~------------~~~~~~~~nla~~~~ 459 (572)
.+--.|..|..--+..+|..+|.+|.++.+.+.... .+.++... ..+...+..+|..|+
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 344455555444466788888888888877654321 11111111 122233455899999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008251 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (572)
Q Consensus 460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~ 534 (572)
+.+++..|+.+++.|++.+|++..+|.-+|.+|...|+|..|++.|.+|..++|.+.-.+.....+.....+++.
T Consensus 574 ea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred CccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 999999999999999999999999999999999999999999999999999999997766665555555555444
No 195
>PRK10941 hypothetical protein; Provisional
Probab=97.48 E-value=0.0012 Score=64.52 Aligned_cols=81 Identities=15% Similarity=0.107 Sum_probs=71.9
Q ss_pred HHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008251 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (572)
Q Consensus 445 ~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 524 (572)
.+....+.|+=.+|++.++|..|+.+++.++.++|+++.-+.-||.+|.+++.+..|..+|+..++..|+++.+......
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 34555677999999999999999999999999999999999999999999999999999999999999999866544444
Q ss_pred H
Q 008251 525 L 525 (572)
Q Consensus 525 l 525 (572)
+
T Consensus 258 l 258 (269)
T PRK10941 258 I 258 (269)
T ss_pred H
Confidence 4
No 196
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.48 E-value=0.00019 Score=46.07 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=29.8
Q ss_pred HhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008251 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (572)
Q Consensus 449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (572)
.+++++|.+++++++|++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 357899999999999999999999999999986
No 197
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.0031 Score=58.75 Aligned_cols=119 Identities=22% Similarity=0.304 Sum_probs=86.7
Q ss_pred CcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HH-HH
Q 008251 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN------VK-AL 485 (572)
Q Consensus 413 g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~------~k-a~ 485 (572)
.++..|+.+|+.|-++..... .......|++-.|.....+++|.+|+..|+++....-+| +| .+
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ee---------s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEE---------SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchh---------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 578889999998888766433 234566788888888889999999999999988766554 23 45
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008251 486 YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYG 541 (572)
Q Consensus 486 ~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 541 (572)
+..|.||+-..+.-.|...+++..+++|...+-+ +..-++..+...++.....|.
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR-Eckflk~L~~aieE~d~e~ft 253 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR-ECKFLKDLLDAIEEQDIEKFT 253 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH-HHHHHHHHHHHHhhhhHHHHH
Confidence 6889999999999999999999999999975432 223333333444444444433
No 198
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.46 E-value=0.00021 Score=45.95 Aligned_cols=33 Identities=39% Similarity=0.564 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008251 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (572)
Q Consensus 483 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 515 (572)
++|+.+|.+|..+|++++|++.|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578888888888888888888888888888854
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.45 E-value=0.0044 Score=55.76 Aligned_cols=111 Identities=16% Similarity=0.240 Sum_probs=91.3
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (572)
.+.....|+.+...|+|.+|...|.+++.-+--+. ..+++-+|++++..+++..|...++++.+.+
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d--------------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD--------------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC--------------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 34567789999999999999999999996432211 2347789999999999999999999999998
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008251 479 SR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (572)
Q Consensus 479 p~--~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 524 (572)
|. .+....-.|++|..+|.+..|...|+.++...|.-. ++-.+..
T Consensus 155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~~Y~e 201 (251)
T COG4700 155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ-ARIYYAE 201 (251)
T ss_pred CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 85 477788889999999999999999999999998853 4444443
No 200
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.45 E-value=0.00094 Score=71.82 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=98.1
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 008251 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (572)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k 483 (572)
-.+..+.+.++-++|..+..+|-.+.+ +.+..|+.+|.++...+++.+|...|..|+.+||+++.
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~---------------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~ 719 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDP---------------LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP 719 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcch---------------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH
Confidence 444555566667778888888776654 34556889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008251 484 ALYRRAQAYIQMADLDLAEF--DIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (572)
Q Consensus 484 a~~~~g~a~~~l~~~~~A~~--~~~~al~l~P~~~~~~~~l~~l~~~~~~~~ 533 (572)
...-+|.+|+..|+-.-|.. .+..|++++|.|.+++..++.+.+.+...+
T Consensus 720 s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 99999999999999888888 999999999999999999999877766554
No 201
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.44 E-value=0.0011 Score=63.57 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=77.3
Q ss_pred HhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHH
Q 008251 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYKT 524 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~---~~~~~l~~ 524 (572)
.+|.|.-+++.++|..|...+..=++..|+. +.|+|++|.+++.+|+|+.|...|..+.+-.|+++ +....+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6799999999999999999999999999986 68999999999999999999999999999988874 55566666
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 008251 525 LKEKMKEYNKKEAKFYGNMFAK 546 (572)
Q Consensus 525 l~~~~~~~~~~~~~~~~~~f~~ 546 (572)
+..++++.+.+. .+|....++
T Consensus 224 ~~~~l~~~d~A~-atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEAC-ATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHH-HHHHHHHHH
Confidence 666665555444 344444433
No 202
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.0012 Score=66.53 Aligned_cols=131 Identities=15% Similarity=0.003 Sum_probs=104.7
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCCh-------HHHHHHHHH------------HHHhHhhHH
Q 008251 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-------EEKKQAKAL------------KVACNLNNA 455 (572)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-------e~~~~~~~~------------~~~~~~nla 455 (572)
.+..++.+.+.++.|--..+..+|++.|.++..++|.++.... .+-.+.+.. .+...-.||
T Consensus 554 l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ 633 (840)
T KOG2003|consen 554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA 633 (840)
T ss_pred HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH
Confidence 3456788999999999999999999999999998887653210 010111100 111223688
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 456 ~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
..|+...=|++|+.++++|--+.|+..|-....+.|+.+.|+|+.|.+.|+...+..|++-++...|-++
T Consensus 634 ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999998887777655
No 203
>PRK11906 transcriptional regulator; Provisional
Probab=97.41 E-value=0.00055 Score=70.49 Aligned_cols=88 Identities=15% Similarity=0.074 Sum_probs=76.8
Q ss_pred cHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008251 414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYI 493 (572)
Q Consensus 414 ~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~ 493 (572)
+-.+|.+.-.+|+++.+.+.. ++..+|.+....++++.|+..+++|+.++|+.+.+||..|..+.
T Consensus 319 ~~~~a~~~A~rAveld~~Da~---------------a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~ 383 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGK---------------ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF 383 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHH---------------HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 345666777777777666553 37788998888999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCH
Q 008251 494 QMADLDLAEFDIKKALEIDPDNR 516 (572)
Q Consensus 494 ~l~~~~~A~~~~~~al~l~P~~~ 516 (572)
..|+.++|++.+++|++++|.-.
T Consensus 384 ~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 384 HNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred HcCCHHHHHHHHHHHhccCchhh
Confidence 99999999999999999999864
No 204
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.38 E-value=0.00072 Score=67.36 Aligned_cols=107 Identities=20% Similarity=0.142 Sum_probs=66.1
Q ss_pred HHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHh--cC--CHHHHHHHHHHHHhcCCCCH
Q 008251 407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--LK--DYKQAEKLCTKVLDLDSRNV 482 (572)
Q Consensus 407 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k--~~--~~~~Ai~~~~~al~~~p~~~ 482 (572)
..+.+.++++.|.+.++.+-+..+. .+..++|.++.. .| .++.|...|+...+..+.++
T Consensus 139 qi~L~~~R~dlA~k~l~~~~~~~eD-----------------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~ 201 (290)
T PF04733_consen 139 QILLKMNRPDLAEKELKNMQQIDED-----------------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTP 201 (290)
T ss_dssp HHHHHTT-HHHHHHHHHHHHCCSCC-----------------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCc-----------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCH
Confidence 3556677777777777665433211 113344443333 23 57788888887777667777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008251 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (572)
Q Consensus 483 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~ 530 (572)
..+..+|.|++.+|+|++|...+++|+..+|++.++..++..+...+.
T Consensus 202 ~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~g 249 (290)
T PF04733_consen 202 KLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLG 249 (290)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhC
Confidence 787888888888888888888888888888887776666655544443
No 205
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.37 E-value=0.00093 Score=75.15 Aligned_cols=110 Identities=14% Similarity=0.045 Sum_probs=81.8
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHH--HHHHHH--HHHHhHhhHHHHHHhcCCHHHHHHHHHHHH
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEE--KKQAKA--LKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~--~~~~~~--~~~~~~~nla~~~~k~~~~~~Ai~~~~~al 475 (572)
.-+.-.|..+++++++..|... .++...+......--+ ...+.. -...+++.+|.||-+++++++|...++++|
T Consensus 66 ~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L 143 (906)
T PRK14720 66 SALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLV 143 (906)
T ss_pred ehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3455667777777777777766 6666555443221000 000000 112368899999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008251 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (572)
Q Consensus 476 ~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 512 (572)
+++|+|+.++.+.|..|... ++++|+..+++|+...
T Consensus 144 ~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 144 KADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred hcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 99999999999999999999 9999999999998764
No 206
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.36 E-value=0.0018 Score=54.66 Aligned_cols=63 Identities=30% Similarity=0.227 Sum_probs=57.9
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008251 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (572)
Q Consensus 453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 515 (572)
..|......++.+.|++.+.++|.+.|.++.+|.+|++++.-.++.++|++++.+|+++....
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 346666778999999999999999999999999999999999999999999999999997554
No 207
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.35 E-value=0.00096 Score=57.96 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=62.9
Q ss_pred HhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008251 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~ 518 (572)
+++.|...++.++|.+|++.++.+....|-. ..|.+.++.+|+..++|++|+..+++.++|+|.++.+
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 6789999999999999999999999988754 6899999999999999999999999999999998743
No 208
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.33 E-value=0.0037 Score=64.59 Aligned_cols=108 Identities=17% Similarity=0.151 Sum_probs=94.3
Q ss_pred HcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008251 411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQ 490 (572)
Q Consensus 411 ~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~ 490 (572)
..++++.|++.+++..+..|. +..-+|.+++..++-.+|+....++|...|.+...+.-.|.
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe------------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE------------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAE 242 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 356789999998886654431 13458899999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008251 491 AYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (572)
Q Consensus 491 a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~ 536 (572)
.++..++++.|+...++|.++.|++...+..|.++...+.+.+.+-
T Consensus 243 fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999988887777664
No 209
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.32 E-value=0.0011 Score=64.27 Aligned_cols=69 Identities=22% Similarity=0.226 Sum_probs=62.8
Q ss_pred HhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008251 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV---KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~---ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~ 519 (572)
++..|.-+++.++|+.|+..+++++...|... .+.+++|.+|+++++|++|+..|++++++.|+++.+-
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 66889999999999999999999999999875 4559999999999999999999999999999986543
No 210
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.21 E-value=0.0028 Score=53.89 Aligned_cols=84 Identities=17% Similarity=0.224 Sum_probs=68.3
Q ss_pred HHHhHhhHHHHHHhcCC---HHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008251 447 KVACNLNNAACKLKLKD---YKQAEKLCTKVLD-LDSR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (572)
Q Consensus 447 ~~~~~~nla~~~~k~~~---~~~Ai~~~~~al~-~~p~-~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~ 521 (572)
...+.+|+|-|+.+..+ -++.+..+...++ -+|. .-..+|.+|..|.++++|++|+.+++..++.+|+|.++..+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 34557899999988764 5677888888886 4443 46889999999999999999999999999999999998877
Q ss_pred HHHHHHHHH
Q 008251 522 YKTLKEKMK 530 (572)
Q Consensus 522 l~~l~~~~~ 530 (572)
-+.++.++.
T Consensus 111 k~~ied~it 119 (149)
T KOG3364|consen 111 KETIEDKIT 119 (149)
T ss_pred HHHHHHHHh
Confidence 776655543
No 211
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.20 E-value=0.00085 Score=69.83 Aligned_cols=106 Identities=16% Similarity=0.152 Sum_probs=91.2
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 008251 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL 485 (572)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~ 485 (572)
|-.+-..|+-..|+.+...|+...|.....+ ..|+|++.++.+....|-..+.++|.+....+-.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~--------------~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~ 679 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVP--------------LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTF 679 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhccc--------------HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHH
Confidence 3333456888999999999997766443321 56999999999999999999999999998889999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 486 YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 486 ~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
|-.|++|+.+.+.+.|++.|+.|++++|++..+..-|..+
T Consensus 680 ~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 680 LSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 9999999999999999999999999999999888777655
No 212
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0021 Score=64.46 Aligned_cols=114 Identities=16% Similarity=0.090 Sum_probs=80.6
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (572)
.+.+.-+|+.+.+.++..+|+-.|..|..+.|. +..+|--+-.||+..+.+.+|....+.++..-
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~---------------rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~ 398 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPY---------------RLEIYRGLFHSYLAQKRFKEANALANWTIRLF 398 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcchh---------------hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence 345666777777777777777777777766554 23446677888888888888888888888888
Q ss_pred CCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008251 479 SRNVKALYRRA-QAYI-QMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (572)
Q Consensus 479 p~~~ka~~~~g-~a~~-~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~ 527 (572)
|++++++--.| .+++ .-.--++|.+.++++|+++|....+-..++.+..
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~ 449 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ 449 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHH
Confidence 88888887775 3333 2333578888888888888888555555554443
No 213
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.18 E-value=0.00092 Score=66.61 Aligned_cols=94 Identities=21% Similarity=0.235 Sum_probs=75.2
Q ss_pred CcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008251 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY 492 (572)
Q Consensus 413 g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~ 492 (572)
.++..|...|++..+..+. ...+++.+|.|++.+++|++|...+.++++.+|+++.++.+++.|.
T Consensus 181 e~~~~A~y~f~El~~~~~~---------------t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~ 245 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGS---------------TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCS 245 (290)
T ss_dssp TCCCHHHHHHHHHHCCS-----------------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCC---------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3699999999986543221 1244678999999999999999999999999999999999999999
Q ss_pred HhcCCH-HHHHHHHHHHHHhCCCCHHHHHH
Q 008251 493 IQMADL-DLAEFDIKKALEIDPDNRDVKLE 521 (572)
Q Consensus 493 ~~l~~~-~~A~~~~~~al~l~P~~~~~~~~ 521 (572)
..+|+. +.+.+.+.+....+|+++-+...
T Consensus 246 ~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 246 LHLGKPTEAAERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp HHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence 999998 67778888888899999755433
No 214
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.13 E-value=0.0016 Score=46.45 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=34.5
Q ss_pred HhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008251 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQ 490 (572)
Q Consensus 449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~ 490 (572)
.+++.+|..++++++|..|..+|+.+|+++|+|..|.--+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 357899999999999999999999999999999887654433
No 215
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.11 E-value=0.0026 Score=63.70 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=83.8
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcC-
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD- 478 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~- 478 (572)
..+-+.||++.-.|+|..|+++|++++.+...... +..-+...+.||..|.-+++|++||.+.++-|.+-
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~---------r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN---------RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc---------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999877553322 12223346689999999999999999999866543
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008251 479 -----SRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (572)
Q Consensus 479 -----p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 512 (572)
-....|+|.+|.+|..+|+.+.|+.+..+.+++.
T Consensus 307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 2457999999999999999999999998888763
No 216
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.0041 Score=65.56 Aligned_cols=105 Identities=17% Similarity=0.146 Sum_probs=90.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (572)
-..+.+.+..+|+..+|..|++.|...++..+.+... ....+..-|++.||+++.+.+.|++++..|=+.+
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~---------~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d 424 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYS---------DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD 424 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhh---------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence 3457889999999999999999999999988875432 2236667799999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008251 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (572)
Q Consensus 479 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 512 (572)
|.++-..+...++...-+.-++|+..+.+.....
T Consensus 425 ~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 425 RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 9999999999999999999999999888776543
No 217
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.11 E-value=0.0014 Score=60.21 Aligned_cols=74 Identities=14% Similarity=0.054 Sum_probs=68.4
Q ss_pred HHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008251 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519 (572)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~ 519 (572)
.++.+++.+|..|-.+|-|.-|..++.++|.+.|+-+.++..+|.-+...|+|+.|.+.|...+++||.+.-+.
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~ 136 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH 136 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999985443
No 218
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.08 E-value=0.0014 Score=64.53 Aligned_cols=125 Identities=19% Similarity=0.246 Sum_probs=95.2
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccC----------CCCh-----HH-------------HHHHHHHHHH
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT----------SFGD-----EE-------------KKQAKALKVA 449 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~----------~~~~-----e~-------------~~~~~~~~~~ 449 (572)
++.+..+.|..+|...++.+|+..+.+.|..+.... .... ++ ..+-...+..
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999887654321 0100 00 0111224556
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008251 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN-----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (572)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~-----~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l 522 (572)
+++|++..+.++.+|.+++.+|...+.+-... ..+..-+|.|++.++.|+.|++.|++|++..-++.+...++
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 78999999999999999999999998874333 36778899999999999999999999999977765544443
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.016 Score=54.94 Aligned_cols=116 Identities=21% Similarity=0.315 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCC------------CChHH------------HHHHH--HHHHHhHhhH
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS------------FGDEE------------KKQAK--ALKVACNLNN 454 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~------------~~~e~------------~~~~~--~~~~~~~~nl 454 (572)
......+++...|+|.-.+..|.+.++..+.... +.+++ ...+. .....++.|.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666777777777777777777765532111 11110 00111 1245567899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008251 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (572)
Q Consensus 455 a~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 516 (572)
|..|+-.++|..|...+++.+..||.++-|-.++|.|++.+|+...|++.++.++...|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999964
No 220
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.03 E-value=0.00033 Score=68.64 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=61.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008251 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (572)
Q Consensus 455 a~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~ 528 (572)
|.-.+..|.++.|+.+|..+++++|...-.|-.|+.+++++++...|+.+|..|++++|+...-......++..
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl 194 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL 194 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH
Confidence 44455678899999999999999999999999999999999999999999999999999975433333333333
No 221
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.00 E-value=0.0059 Score=64.67 Aligned_cols=123 Identities=13% Similarity=0.053 Sum_probs=84.8
Q ss_pred cCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008251 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (572)
Q Consensus 412 ~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a 491 (572)
.++.++|++..++||+..|. ..++|+.+|+.+-.+++.+.|...|..-++.+|+.+-.|.-+++.
T Consensus 664 ld~~eeA~rllEe~lk~fp~---------------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPD---------------FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCc---------------hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 34455555555555554443 345688899999999999999999999999999999999999998
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhcccCCC
Q 008251 492 YIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA-KFYGNMFAKMSMFG 551 (572)
Q Consensus 492 ~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~f~~~~~~~ 551 (572)
-.+.|+.-.|+..|.++...+|.|... .|..++..++.....++ .+..+...++...+
T Consensus 729 eEk~~~~~rAR~ildrarlkNPk~~~l--wle~Ir~ElR~gn~~~a~~lmakALQecp~sg 787 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNPKNALL--WLESIRMELRAGNKEQAELLMAKALQECPSSG 787 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCCCcchh--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc
Confidence 888889999999999999999998544 44444444443333222 22334444444433
No 222
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.005 Score=60.59 Aligned_cols=97 Identities=20% Similarity=0.139 Sum_probs=74.6
Q ss_pred HHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 008251 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR 487 (572)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~ 487 (572)
.+..+.+|..|+...+-.+... .||. ..+.+.+|.|++.+++|++|+..|.-+.+.+..+.+.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~-------~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vn 96 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLD-------REEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVN 96 (557)
T ss_pred HHHhcccchhHHHHHHHhhccc-------hhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchh
Confidence 4666788988888877666321 1222 2335679999999999999999999999988888999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008251 488 RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (572)
Q Consensus 488 ~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l 522 (572)
+|.|++-+|.|.+|...-.+| |+++-...++
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLl 127 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKA----PKTPLCIRLL 127 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhC----CCChHHHHHH
Confidence 999999999999998765544 5665444333
No 223
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.97 E-value=0.0073 Score=64.02 Aligned_cols=105 Identities=20% Similarity=0.136 Sum_probs=59.7
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008251 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (572)
Q Consensus 402 ~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (572)
+-.+|-.+...|+-++|...-..+++..... ..|+.-+|..+...++|++|+.+|..||.++|+|
T Consensus 44 lAmkGL~L~~lg~~~ea~~~vr~glr~d~~S---------------~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN 108 (700)
T KOG1156|consen 44 LAMKGLTLNCLGKKEEAYELVRLGLRNDLKS---------------HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN 108 (700)
T ss_pred HHhccchhhcccchHHHHHHHHHHhccCccc---------------chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc
Confidence 3345555555666666666655555532211 1345556666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008251 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (572)
Q Consensus 482 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~ 521 (572)
...|+-++..-.++++|+-....-.+.+++.|.+...+.-
T Consensus 109 ~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~ 148 (700)
T KOG1156|consen 109 LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIG 148 (700)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHH
Confidence 6666666666666666666666666666666665443333
No 224
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.92 E-value=0.0008 Score=69.00 Aligned_cols=63 Identities=32% Similarity=0.351 Sum_probs=60.5
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008251 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (572)
Q Consensus 453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 515 (572)
+-|.-.++-+.|+.|+..|.+||+++|+++..+-+|+.+|++.++|..|+.++.+|++++|..
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~ 71 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY 71 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence 677788899999999999999999999999999999999999999999999999999999987
No 225
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0054 Score=60.00 Aligned_cols=72 Identities=24% Similarity=0.214 Sum_probs=61.2
Q ss_pred HhhHHHHHHhcCCHHHHHHHHHHHHhcC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008251 451 NLNNAACKLKLKDYKQAEKLCTKVLDLD---SR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~---p~-~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 524 (572)
|-.-|+-|+|.++|..|+..|.+.|... |+ |+-.|.|||-|.+.+|+|..|+.++.+|+.++|.+ ++..++-
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h--~Ka~~R~ 159 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH--LKAYIRG 159 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch--hhhhhhh
Confidence 4467888999999999999999999864 32 56788899999999999999999999999999999 4444443
No 226
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.90 E-value=0.014 Score=61.90 Aligned_cols=127 Identities=18% Similarity=0.135 Sum_probs=101.0
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhccCCC---------ChHHHHHHHHHHHH---------hHhhHHHHHHhcCCHH
Q 008251 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKKQAKALKVA---------CNLNNAACKLKLKDYK 465 (572)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~e~~~~~~~~~~~---------~~~nla~~~~k~~~~~ 465 (572)
.-+...+..|+...|......|.+..|+.... ...+.+.++.+... +++--+....-+++.+
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHH
Confidence 44566778899999999999999988874332 11233444444443 3344455555678999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008251 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (572)
Q Consensus 466 ~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~ 530 (572)
+|+..|+.+|+..|+..|.|..+|+.+.++++.+.|++.|...++.-|...-..-.|.++..+..
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999888888888866653
No 227
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.029 Score=55.43 Aligned_cols=72 Identities=19% Similarity=0.159 Sum_probs=62.1
Q ss_pred HhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008251 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l 522 (572)
.+.+|..++..-.|++||+.|.++|.-+|+..-.-..+|.||.++.=|+-+.+.++-.|+.-|+..-+..+.
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLk 225 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLK 225 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHH
Confidence 346777777788899999999999999898877778899999999999999999999999999987554443
No 228
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.84 E-value=0.002 Score=40.82 Aligned_cols=33 Identities=33% Similarity=0.497 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008251 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (572)
Q Consensus 483 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 515 (572)
.|+|++|.|+..+|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367778888888888888888888877777763
No 229
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.82 E-value=0.027 Score=51.38 Aligned_cols=102 Identities=21% Similarity=0.156 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (572)
...+.+..++..++|+.|....+.++..-.. ..++..+-+++|.+++.+++++.|+..++..-.. .-
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w 157 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKD------------ENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SW 157 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchh------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cH
Confidence 4567788899999999999999998853211 1345556779999999999999999987655432 11
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008251 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (572)
Q Consensus 481 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 515 (572)
.+...-.+|.++...|+-++|+..|++|+..++++
T Consensus 158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 158 AAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 23345689999999999999999999999998665
No 230
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.80 E-value=0.0016 Score=41.71 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=29.8
Q ss_pred HhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008251 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (572)
Q Consensus 449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (572)
.+++++|.+|.+++++++|+.+++++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 358899999999999999999999999999864
No 231
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.0029 Score=60.86 Aligned_cols=94 Identities=21% Similarity=0.334 Sum_probs=77.0
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhc
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (572)
.|....+.|..+|+.|+|+.|++.|+.|+..-...+- +-+|+|.|+++.++|..|+++....++.
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl---------------lAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL---------------LAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCch---------------hHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3566788999999999999999999999987554332 3579999999999999999999988764
Q ss_pred ----CCC----------------C---------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008251 478 ----DSR----------------N---------VKALYRRAQAYIQMADLDLAEFDIK 506 (572)
Q Consensus 478 ----~p~----------------~---------~ka~~~~g~a~~~l~~~~~A~~~~~ 506 (572)
.|. | ..|+.-++..+++.++++.|.+.+.
T Consensus 208 G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 208 GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 332 1 2577788899999999999987763
No 232
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.75 E-value=0.012 Score=63.22 Aligned_cols=78 Identities=18% Similarity=0.139 Sum_probs=70.1
Q ss_pred HhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008251 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (572)
Q Consensus 449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~ 526 (572)
.+++..+.++...|++++|+.++...-..-.+....+-.+|.+|+++|++++|...|...++.+|+|......+..+.
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 346678888899999999999999888877888999999999999999999999999999999999988777777765
No 233
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.71 E-value=0.011 Score=53.35 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008251 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL----------DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (572)
Q Consensus 464 ~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~----------~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~ 530 (572)
|+.|.+.+..+...+|.++.+++|.|.+++.+.++ ++|+.-|+.||.++|+..++.-.+..+...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999998654 67899999999999999888888877655443
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.62 E-value=0.014 Score=62.47 Aligned_cols=101 Identities=20% Similarity=0.220 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (572)
-+..+|..+..+|+.+.|++.|++|+... .+.+++...|++.+|-|++-+.+|++|..++.+.++.+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q-----------~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~- 336 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQ-----------SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK- 336 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccch-----------hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-
Confidence 35678888889999999999999988421 234566778899999999999999999999999998543
Q ss_pred CHHH--HHHHHHHHHhcCCH-------HHHHHHHHHHHHhCC
Q 008251 481 NVKA--LYRRAQAYIQMADL-------DLAEFDIKKALEIDP 513 (572)
Q Consensus 481 ~~ka--~~~~g~a~~~l~~~-------~~A~~~~~~al~l~P 513 (572)
..++ .|-.|.|+..+++. ++|.+.|.++-.+-.
T Consensus 337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 3444 46789999999999 888888888876643
No 235
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.59 E-value=0.035 Score=61.74 Aligned_cols=99 Identities=17% Similarity=0.144 Sum_probs=83.6
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCC-HHHHHHHHHHHHhcCCC
Q 008251 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-YKQAEKLCTKVLDLDSR 480 (572)
Q Consensus 402 ~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~-~~~Ai~~~~~al~~~p~ 480 (572)
....+......++|++|++.-+++++..|++..+ +.-+|.++..+++ .++|-++|-.|.+++|+
T Consensus 5 aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA---------------~vFLGvAl~sl~q~le~A~ehYv~AaKldpd 69 (1238)
T KOG1127|consen 5 ALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNA---------------QVFLGVALWSLGQDLEKAAEHYVLAAKLDPD 69 (1238)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchh---------------hhHHHHHHHhccCCHHHHHHHHHHHHhcChh
Confidence 4456777888899999999999999998887765 6688999999988 99999999999999999
Q ss_pred CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCC
Q 008251 481 NVKALYRRAQAYIQ---MADLDLAEFDIKKALEIDPDN 515 (572)
Q Consensus 481 ~~ka~~~~g~a~~~---l~~~~~A~~~~~~al~l~P~~ 515 (572)
|.-||-.++..|.+ ..+++++-..|++++.+.++.
T Consensus 70 nlLAWkGL~nLye~~~dIl~ld~~~~~yq~~~l~le~q 107 (1238)
T KOG1127|consen 70 NLLAWKGLGNLYERYNDILDLDRAAKCYQRAVLILENQ 107 (1238)
T ss_pred hhHHHHHHHHHHHccchhhhhhHhHHHHHHHHHhhhhh
Confidence 99998888888877 456788889998888877764
No 236
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.58 E-value=0.012 Score=56.94 Aligned_cols=74 Identities=23% Similarity=0.171 Sum_probs=66.9
Q ss_pred HhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008251 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 524 (572)
-++.|.-..+.|+.++|...+..|+.++|+|+.++.+.|.....-++.-+|-.+|-+||.++|.|.++..+..+
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 44777777889999999999999999999999999999999999999999999999999999999877665543
No 237
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.58 E-value=0.0035 Score=38.70 Aligned_cols=32 Identities=44% Similarity=0.657 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008251 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (572)
Q Consensus 483 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 514 (572)
.+++++|.++..++++++|+.+|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45677777777777777777777777777665
No 238
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.032 Score=53.21 Aligned_cols=129 Identities=15% Similarity=0.119 Sum_probs=88.4
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhc-------cC----CCChHHHHHHHHHH-HHhHhhHHHHHHhc----CCHHH
Q 008251 403 KEQGNTLFKAGKYARASKRYEKAVKYIEY-------DT----SFGDEEKKQAKALK-VACNLNNAACKLKL----KDYKQ 466 (572)
Q Consensus 403 k~~G~~~~~~g~~~~A~~~y~~al~~~~~-------~~----~~~~e~~~~~~~~~-~~~~~nla~~~~k~----~~~~~ 466 (572)
..-|..+...++|++|++.......+-.. .. .....+.+..+..- -..+..||.++.++ ++++.
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhh
Confidence 34567778889999998877653221000 00 00001111111111 11244577777764 46899
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008251 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (572)
Q Consensus 467 Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~ 531 (572)
|...|+..-+..|.++..+...+.|++.+++|++|...++.||..++++++...++-.+-.....
T Consensus 192 AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 192 AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 99999998887788899999999999999999999999999999999998888777766555443
No 239
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.42 E-value=0.019 Score=54.73 Aligned_cols=71 Identities=20% Similarity=0.206 Sum_probs=64.6
Q ss_pred HHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008251 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (572)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~ 518 (572)
...+++-|+..+..|+|.+|+..++.+....|.. .++.+.++.++++.++|++|+..+++.+++.|.++++
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 3447899999999999999999999999988765 6999999999999999999999999999999998754
No 240
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.42 E-value=0.0058 Score=39.85 Aligned_cols=27 Identities=30% Similarity=0.231 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008251 484 ALYRRAQAYIQMADLDLAEFDIKKALE 510 (572)
Q Consensus 484 a~~~~g~a~~~l~~~~~A~~~~~~al~ 510 (572)
+|.++|.+|..+|+|++|+..|+++|.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666666666666666666443
No 241
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.42 E-value=0.15 Score=51.36 Aligned_cols=126 Identities=17% Similarity=0.181 Sum_probs=87.0
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHH
Q 008251 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (572)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~ 473 (572)
-|...|.....+|-..+-.|+|.+|.+...++-+.-+. ...+|+--|.+.-.+|+++.|=.+..+
T Consensus 79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~---------------p~l~~l~aA~AA~qrgd~~~an~yL~e 143 (400)
T COG3071 79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ---------------PVLAYLLAAEAAQQRGDEDRANRYLAE 143 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc---------------hHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 56777888888999999999999999998886543221 223344556666667777777777777
Q ss_pred HHhcCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008251 474 VLDLDS-RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (572)
Q Consensus 474 al~~~p-~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~ 534 (572)
+-+.-+ ++.-++.-++..+...+++..|...+.++++..|.++.+.....++....+.+++
T Consensus 144 aae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 144 AAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred HhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence 777632 3456666777777777777777777777777777777766666666555544443
No 242
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.25 E-value=0.1 Score=49.44 Aligned_cols=100 Identities=13% Similarity=0.093 Sum_probs=74.5
Q ss_pred HHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCC-------HHHHHHHHHHHHhcCCC
Q 008251 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-------YKQAEKLCTKVLDLDSR 480 (572)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~-------~~~Ai~~~~~al~~~p~ 480 (572)
.+-....++.|+..|.-|+-........ ....+.+++.+|=+|..+++ +..|+..+.+|++....
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~--------~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~ 157 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEK--------PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF 157 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 5555678999999999998764432211 12456678888888888887 45566666666665422
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008251 481 ------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (572)
Q Consensus 481 ------~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 515 (572)
....+|.+|..+.++|++++|+.+|.+++..--.+
T Consensus 158 ~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 158 PIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 36899999999999999999999999999765444
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.24 E-value=0.01 Score=58.68 Aligned_cols=102 Identities=22% Similarity=0.257 Sum_probs=83.6
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCC-
Q 008251 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR- 480 (572)
Q Consensus 402 ~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~- 480 (572)
+...|+.+...+.|++|++.|+.|+++.....+.. +-..++..++..+-.++++++|+-+..+|+++-.+
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~---------LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~ 195 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAM---------LELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY 195 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCce---------eeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc
Confidence 34478888899999999999999999876654431 22345778999999999999999999999886432
Q ss_pred -----C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008251 481 -----N----VKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (572)
Q Consensus 481 -----~----~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 512 (572)
+ .-++|+++.+|..+|+.-.|.++++.|.++.
T Consensus 196 ~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 196 GLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred CcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 2 3578999999999999999999999998774
No 244
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.13 E-value=0.0063 Score=38.43 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=29.7
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008251 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (572)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (572)
+++++|.|+.+++++++|+..++++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 47899999999999999999999999999874
No 245
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.08 E-value=0.0076 Score=39.26 Aligned_cols=28 Identities=21% Similarity=0.162 Sum_probs=24.0
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHHHHHhc
Q 008251 450 CNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (572)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (572)
++.|+|.+|.++|+|++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3779999999999999999999996654
No 246
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.03 E-value=0.0027 Score=40.84 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=29.1
Q ss_pred HHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHH
Q 008251 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE 468 (572)
Q Consensus 421 ~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai 468 (572)
+|++||++.|.+... |+|+|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a---------------~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEA---------------YNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHH---------------HHHHHHHHHHCcCHHhhc
Confidence 488999999887654 999999999999999986
No 247
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.00 E-value=0.37 Score=47.82 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=91.9
Q ss_pred CCChHHHHHHHhhhHHHHHHHHHcC-cHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHH
Q 008251 389 DMNTEEKIEAAGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA 467 (572)
Q Consensus 389 ~~~~~e~~~~a~~~k~~G~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~A 467 (572)
.+++......+..+.+-|..+++++ +|..|+...++|.++++.... .........+++..++..++.+|+..+.++..
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDKLSPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 4456667788999999999999999 999999999999999754211 01122345677888899999999998876654
Q ss_pred HH---HHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008251 468 EK---LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513 (572)
Q Consensus 468 i~---~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P 513 (572)
.+ ..+.+-.-.|+.+..++-.-.++.+.++.+++.+.+.+.+.--+
T Consensus 104 ~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 104 EKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 44 33333334577777776666667778888999998888887543
No 248
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=0.055 Score=57.03 Aligned_cols=114 Identities=21% Similarity=0.174 Sum_probs=78.8
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCC---------ChHHHHH----HH-----HHHHHhHhhHHHHHHhc
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKKQ----AK-----ALKVACNLNNAACKLKL 461 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~e~~~~----~~-----~~~~~~~~nla~~~~k~ 461 (572)
..+...-|.+-..++|++|+..-.+.+...|.+... ..+..+. ++ .......+..|.|++++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 345555666677777777777777777665543321 0011110 00 01111225889999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008251 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (572)
Q Consensus 462 ~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 516 (572)
++.++|+.+++ -+++...+.+.-+|+.++++++|++|.+.|+...+-+-++.
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 99999999988 55677788999999999999999999999999887665553
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.2 Score=48.87 Aligned_cols=116 Identities=17% Similarity=0.181 Sum_probs=83.0
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHH-------
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT------- 472 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~------- 472 (572)
+....++..+...+++..|...|..++...+..... .+-+|.||+..|+.+.|...+.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~---------------~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEA---------------KLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchH---------------HHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 345678889999999999999999999988876433 4567777777777654433322
Q ss_pred ---------------------------HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 008251 473 ---------------------------KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYK 523 (572)
Q Consensus 473 ---------------------------~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~--~~~~~~~l~ 523 (572)
+.+..||++..+-+.+|..|...|++++|.+.|-..++.+-. +..+++.+-
T Consensus 200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ll 279 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLL 279 (304)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence 223456888888899999999999999999888888877544 334555555
Q ss_pred HHHHHHH
Q 008251 524 TLKEKMK 530 (572)
Q Consensus 524 ~l~~~~~ 530 (572)
.+-..+.
T Consensus 280 e~f~~~g 286 (304)
T COG3118 280 ELFEAFG 286 (304)
T ss_pred HHHHhcC
Confidence 4444433
No 250
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.90 E-value=0.21 Score=46.16 Aligned_cols=57 Identities=32% Similarity=0.429 Sum_probs=29.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008251 458 KLKLKDYKQAEKLCTKVLDLDSR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (572)
Q Consensus 458 ~~k~~~~~~Ai~~~~~al~~~p~-~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 514 (572)
+...+++..|+..+.+++...+. ...++..++.++...++++.|+..+..++...|.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 44444555555555555555554 3555555555555555555555555555555554
No 251
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.86 E-value=0.11 Score=53.99 Aligned_cols=99 Identities=19% Similarity=0.176 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 008251 417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA 496 (572)
Q Consensus 417 ~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~ 496 (572)
+-+..|..|+...+.+. .++++......|.+.+.+.-..|.++|..+|+++..|...|.=.+..+
T Consensus 89 rIv~lyr~at~rf~~D~---------------~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n 153 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDV---------------KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN 153 (568)
T ss_pred HHHHHHHHHHHhcCCCH---------------HHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhc
Confidence 34566777776665443 335566666666777999999999999999999999999888888777
Q ss_pred C-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008251 497 D-LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (572)
Q Consensus 497 ~-~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~ 530 (572)
. .+.|++.|.++|+.+|+++.++.++-+......
T Consensus 154 ~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~ 188 (568)
T KOG2396|consen 154 LNIESARALFLRGLRFNPDSPKLWKEYFRMELMYA 188 (568)
T ss_pred cchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Confidence 6 999999999999999999988887766544433
No 252
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.85 E-value=0.12 Score=53.09 Aligned_cols=89 Identities=20% Similarity=0.252 Sum_probs=52.2
Q ss_pred HcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHh------------------------------
Q 008251 411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK------------------------------ 460 (572)
Q Consensus 411 ~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k------------------------------ 460 (572)
...+...+...|+.+|+++|...-. .+++++..|...++
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFt-----------FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIel 446 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFT-----------FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIEL 446 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccch-----------HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 4688899999999999988864321 22333334444444
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008251 461 ---LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (572)
Q Consensus 461 ---~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 510 (572)
+++|+.|...|.+-|+..|.|..+|..-|..-..||+.+.|+..|.-|+.
T Consensus 447 ElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 44555555555555555555555555555555555555555555555543
No 253
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.82 E-value=0.073 Score=42.83 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHH
Q 008251 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEYKTLKEKMKEYNK 534 (572)
Q Consensus 467 Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~--~~~~~~l~~l~~~~~~~~~ 534 (572)
.+..+++.++.+|++..+.|.+|.++...|++++|++.|-.+++.+++. ..++..+-.+-..+.....
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence 4567888999999999999999999999999999999999999998875 4666666666555554443
No 254
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=0.12 Score=48.36 Aligned_cols=110 Identities=19% Similarity=0.097 Sum_probs=79.5
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhc-CCHHHHHHHHHHHHh
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTKVLD 476 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~-~~~~~Ai~~~~~al~ 476 (572)
.+..+.+.+| .|++.+..+|+++..+|+++......+ .....-+..+|..|-.. .+++.||.+|+++-+
T Consensus 73 aat~YveA~~-cykk~~~~eAv~cL~~aieIyt~~Grf---------~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae 142 (288)
T KOG1586|consen 73 AATTYVEAAN-CYKKVDPEEAVNCLEKAIEIYTDMGRF---------TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAE 142 (288)
T ss_pred HHHHHHHHHH-HhhccChHHHHHHHHHHHHHHHhhhHH---------HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3444444443 455568888888888888887654433 22333455677777654 899999999999977
Q ss_pred cCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008251 477 LDSR------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (572)
Q Consensus 477 ~~p~------~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~ 517 (572)
.... --|++..-|.--..+++|.+|+..|++.....-+|.-
T Consensus 143 ~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 143 YYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 5432 2488888888888999999999999999887777753
No 255
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=0.11 Score=55.01 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 008251 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482 (572)
Q Consensus 403 k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ 482 (572)
++++-++|+.+..++|+..++ .++-++ ..+..-.|+.++++++|++|+..|+..++.+.+..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~-~~~~~~-----------------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK-GLDRLD-----------------DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh-cccccc-----------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 588999999999999999988 222111 12355789999999999999999999999887776
Q ss_pred HHHHHH
Q 008251 483 KALYRR 488 (572)
Q Consensus 483 ka~~~~ 488 (572)
....+.
T Consensus 145 d~~~r~ 150 (652)
T KOG2376|consen 145 DEERRA 150 (652)
T ss_pred HHHHHH
Confidence 665443
No 256
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=0.12 Score=48.80 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=82.0
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHH----HhcC-
Q 008251 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV----LDLD- 478 (572)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a----l~~~- 478 (572)
+++-...+..+.+.|+..|++++.+...+... .+...++...+..+.+++.|.+|-..+.+- ++.+
T Consensus 115 eKAak~lenv~Pd~AlqlYqralavve~~dr~---------~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~ 185 (308)
T KOG1585|consen 115 EKAAKALENVKPDDALQLYQRALAVVEEDDRD---------QMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA 185 (308)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhccchH---------HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence 44444455567788888888888877654322 233445667888888999999887777653 3333
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008251 479 -SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGN 542 (572)
Q Consensus 479 -p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 542 (572)
++.-|++.-.-.+|+...+|..|..+++...++..-+ -...-+.+...+..+++.+...+++
T Consensus 186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~--~sed~r~lenLL~ayd~gD~E~~~k 248 (308)
T KOG1585|consen 186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL--KSEDSRSLENLLTAYDEGDIEEIKK 248 (308)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc--ChHHHHHHHHHHHHhccCCHHHHHH
Confidence 4456778777788888899999999999877764333 1222333344444444444333333
No 257
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.70 E-value=0.017 Score=35.41 Aligned_cols=32 Identities=38% Similarity=0.471 Sum_probs=29.3
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008251 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (572)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (572)
+++++|.|+..+++++.|+.++.++++.+|++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 47899999999999999999999999998863
No 258
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.67 E-value=0.036 Score=57.03 Aligned_cols=119 Identities=17% Similarity=0.105 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHh-c--
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD-L-- 477 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~-~-- 477 (572)
.+.-+.+..|..|+|..|.+.....---.......+ -+-.....++|+|..++.++.|..+..++.+||+ .
T Consensus 242 ~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T------~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 242 ALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTIT------PQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS 315 (696)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhcccccccCcccc------chhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH
Confidence 444556667777777777665543211000000001 1122334468999999999999999999999996 1
Q ss_pred ------CC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 478 ------DS---------RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 478 ------~p---------~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
.| ..-..+|+.|..|++.|+.-.|-++|.++....-.|+.++.-++.|
T Consensus 316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC 378 (696)
T ss_pred HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 11 1247899999999999999999999999999999998777777665
No 259
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.64 E-value=0.12 Score=47.79 Aligned_cols=66 Identities=36% Similarity=0.481 Sum_probs=61.0
Q ss_pred HhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008251 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (572)
Q Consensus 449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 514 (572)
..+.+++.++...+++..|+..+..++...|.....++.++..+...+++++|...+.+++..+|.
T Consensus 203 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 203 EALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 347789999999999999999999999999998889999999999888899999999999999997
No 260
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.64 E-value=0.19 Score=46.11 Aligned_cols=103 Identities=18% Similarity=0.170 Sum_probs=78.9
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHh
Q 008251 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (572)
Q Consensus 397 ~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (572)
.....+.+.|..+++.|+++.|++.|.++.+++... .....+++++-.+.+..++|..+..+..+|-.
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~------------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP------------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344668899999999999999999999988765432 34566788999999999999999999999866
Q ss_pred cCCC--C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008251 477 LDSR--N----VKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (572)
Q Consensus 477 ~~p~--~----~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 511 (572)
+-.. + .+.-...|.+++..++|.+|-..|-.+..-
T Consensus 102 ~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 102 LIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 4322 2 123334677788889999999888766543
No 261
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.52 E-value=0.021 Score=53.17 Aligned_cols=61 Identities=20% Similarity=0.308 Sum_probs=56.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008251 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (572)
Q Consensus 457 ~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~ 517 (572)
...+.++.+.|.+.|++++++-|.....|||.|....+.|+++.|.+.|.+.++++|++..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3456789999999999999999999999999999999999999999999999999999854
No 262
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=0.12 Score=49.92 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=67.8
Q ss_pred HHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008251 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (572)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~ 521 (572)
....+..|+=..++..++|+.|..+.++.+.++|.++..+--+|.+|.+++-+.-|++++..+++.-|+...+...
T Consensus 179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 179 ILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 3445566888889999999999999999999999999999999999999999999999999999999998755433
No 263
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.44 E-value=0.16 Score=54.97 Aligned_cols=119 Identities=11% Similarity=-0.008 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhhccCCCChH-------HHHHHHHHHHHhHhhHHHHHHhcC--------CHHHHHHHHHHHHhc--CC
Q 008251 417 RASKRYEKAVKYIEYDTSFGDE-------EKKQAKALKVACNLNNAACKLKLK--------DYKQAEKLCTKVLDL--DS 479 (572)
Q Consensus 417 ~A~~~y~~al~~~~~~~~~~~e-------~~~~~~~~~~~~~~nla~~~~k~~--------~~~~Ai~~~~~al~~--~p 479 (572)
.|..+|-++..++......... +..++..-...++.-+|.||.... +...+.....+++.+ +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 6777777777665432211000 111111223334555566665432 344566666666663 78
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008251 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (572)
Q Consensus 480 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~ 536 (572)
..+.+|.-+|..+...|++++|...|++|+.++|+ ..+...+.++.....+.+++.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~ 473 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAA 473 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHH
Confidence 88899999999999999999999999999999994 677778887777666555544
No 264
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.28 E-value=0.17 Score=50.39 Aligned_cols=98 Identities=16% Similarity=0.117 Sum_probs=75.4
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHh-cCCHHHHHHHHHHHHhcCCCCH
Q 008251 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLDLDSRNV 482 (572)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k-~~~~~~Ai~~~~~al~~~p~~~ 482 (572)
...+..-+.+..+.|...|.+|++...... .+|...|...+. .++.+.|...++.+++..|.+.
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~---------------~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~ 70 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTY---------------HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-T---------------HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCH---------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH
Confidence 344555555668899999999984322111 236677777666 5677779999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008251 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (572)
Q Consensus 483 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 516 (572)
..|.....-+..+++.+.|+..|++++..-|...
T Consensus 71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 71 DFWLEYLDFLIKLNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchh
Confidence 9999999999999999999999999999877765
No 265
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.24 E-value=0.09 Score=51.47 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008251 438 EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (572)
Q Consensus 438 e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 511 (572)
++....+++...++..++..+...++++.++...++.++.+|-+.++|.++-.+|+..|+...|+..|++..++
T Consensus 143 ~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 143 EQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 45667788899999999999999999999999999999999999999999999999999999999999988874
No 266
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.21 E-value=0.38 Score=56.32 Aligned_cols=102 Identities=21% Similarity=0.125 Sum_probs=69.8
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCC--
Q 008251 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR-- 480 (572)
Q Consensus 403 k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~-- 480 (572)
...|..++..|++..|...|.+++......... .....++.++|.+++..|+++.|...+.+++.+...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 565 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVY---------HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH 565 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence 344555555666666666666666543322111 122345678899999999999999999998875221
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008251 481 ------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513 (572)
Q Consensus 481 ------~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P 513 (572)
..-.+..+|.++...|++++|...+.+++.+..
T Consensus 566 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 566 LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 233456788899999999999999999987643
No 267
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=95.18 E-value=0.11 Score=53.88 Aligned_cols=123 Identities=18% Similarity=0.258 Sum_probs=79.9
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcC--C-----HHHHH
Q 008251 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--D-----YKQAE 468 (572)
Q Consensus 396 ~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~--~-----~~~Ai 468 (572)
+.......+.|..++..|+|.+|+..|...|..++-....+.++..+++++...|.-.+-.+.+.+. . .+...
T Consensus 201 l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~k 280 (422)
T PF06957_consen 201 LSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQK 280 (422)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH
Confidence 3444456668999999999999999999999998877666678888888888777665544444432 1 22233
Q ss_pred HHHHHHH-----hcCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008251 469 KLCTKVL-----DLDSRNVKALYRRAQ-AYIQMADLDLAEFDIKKALEIDPDNRDV 518 (572)
Q Consensus 469 ~~~~~al-----~~~p~~~ka~~~~g~-a~~~l~~~~~A~~~~~~al~l~P~~~~~ 518 (572)
+.|+-|. ++.|.|.-.-+|.|. ..+++++|--|....++.|++.|....+
T Consensus 281 R~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a 336 (422)
T PF06957_consen 281 RNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVA 336 (422)
T ss_dssp HHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence 3333332 233444333334443 4667899999999999999999987543
No 268
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.17 E-value=0.26 Score=54.66 Aligned_cols=111 Identities=18% Similarity=0.171 Sum_probs=80.3
Q ss_pred HHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 008251 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR 487 (572)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~ 487 (572)
.....++|..|+....+.++..|+...+ ..--|..++++|++++|...++..-..-+++...+--
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a---------------~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~ 82 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYA---------------KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQF 82 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHH---------------HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHH
Confidence 4556788899999888888877754322 3356788889999999995444444455667777778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008251 488 RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (572)
Q Consensus 488 ~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~ 534 (572)
+-.||..++++++|...|+++...+|+ .+....+=.+..+...+.+
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999 4444444444444443333
No 269
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.08 E-value=0.043 Score=53.25 Aligned_cols=83 Identities=19% Similarity=0.218 Sum_probs=69.0
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHH
Q 008251 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (572)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a 474 (572)
+...|......+...++.|+.++|...|..|+.+.|.+... +..+|...-..++.-+|-.+|-+|
T Consensus 112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~---------------L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQI---------------LIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHH---------------HHHHhHHHHhhhhhHhhhhhhhee
Confidence 44455555667778899999999999999999999876644 667777777778888999999999
Q ss_pred HhcCCCCHHHHHHHHHHH
Q 008251 475 LDLDSRNVKALYRRAQAY 492 (572)
Q Consensus 475 l~~~p~~~ka~~~~g~a~ 492 (572)
|.++|.|.+|+.+|++..
T Consensus 177 LtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 177 LTISPGNSEALVNRARTT 194 (472)
T ss_pred eeeCCCchHHHhhhhccc
Confidence 999999999999988754
No 270
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=0.17 Score=49.16 Aligned_cols=86 Identities=15% Similarity=0.062 Sum_probs=70.0
Q ss_pred HHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 008251 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR 488 (572)
Q Consensus 409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~ 488 (572)
+.+..+|..|+++...-.+..|... ..+..+|.||+...+|..|..+|++.-.+.|...+.-+.-
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~r---------------AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~ 84 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSR---------------AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ 84 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccch---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 4566777778777766655544322 2366899999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 008251 489 AQAYIQMADLDLAEFDIKKAL 509 (572)
Q Consensus 489 g~a~~~l~~~~~A~~~~~~al 509 (572)
|+.+++.+.|..|+.......
T Consensus 85 AQSLY~A~i~ADALrV~~~~~ 105 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLL 105 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhc
Confidence 999999999999998766543
No 271
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.95 E-value=0.63 Score=44.10 Aligned_cols=117 Identities=16% Similarity=0.074 Sum_probs=80.3
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcC-
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD- 478 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~- 478 (572)
..+..-++.+-..++|+.|..+..+|.+...++.+.+ ...+.|-..+...-++..|.++...+++|..+.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslf---------hAAKayEqaamLake~~klsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF---------HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH---------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344445666668899999999999998777665542 233445566777777889999999999998763
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Q 008251 479 ----SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD---NRDVKLEYKTL 525 (572)
Q Consensus 479 ----p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~---~~~~~~~l~~l 525 (572)
|+..-.-..+|--.+..-+.++|+..|++++.+--+ ...+...++++
T Consensus 103 E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 444444445555566678899999999999876433 33444444444
No 272
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=94.88 E-value=0.24 Score=41.48 Aligned_cols=81 Identities=19% Similarity=0.077 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHH----Hh
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV----LD 476 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a----l~ 476 (572)
++...|+..++.+++-.|+-+|+.|+.+........+.+.++.-...+....|+|..+..+|+-+-.++|++-| +.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999988877555556666777778888889999999999999999998754 55
Q ss_pred cCCCC
Q 008251 477 LDSRN 481 (572)
Q Consensus 477 ~~p~~ 481 (572)
+-|..
T Consensus 83 LiPQC 87 (140)
T PF10952_consen 83 LIPQC 87 (140)
T ss_pred hccCC
Confidence 65653
No 273
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.87 E-value=0.2 Score=41.43 Aligned_cols=103 Identities=15% Similarity=0.121 Sum_probs=72.9
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHH----HhcCCHHHHHHHHHHHHhcCCC
Q 008251 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK----LKLKDYKQAEKLCTKVLDLDSR 480 (572)
Q Consensus 405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~----~k~~~~~~Ai~~~~~al~~~p~ 480 (572)
++..+|++|++-+|++..+..+.....+...+ -+..+.-.+++.+|..- .|..-.-.+++.+.++..+.|.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~-----~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW-----LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchH-----HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence 56789999999999999999987766544321 22223333333333221 1111245688888999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008251 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (572)
Q Consensus 481 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 512 (572)
.+..+|.+|.-+-....|+++..-.+++|.+.
T Consensus 77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 99999999988888888899998888888753
No 274
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.85 E-value=0.29 Score=47.42 Aligned_cols=75 Identities=15% Similarity=0.093 Sum_probs=66.4
Q ss_pred CCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008251 434 SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA 508 (572)
Q Consensus 434 ~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~a 508 (572)
.+.+++.+.+..+..+++.-.|..|++.+.+.+|+..|++++.+||-+...+..+-..|..+|+--.|++.|++.
T Consensus 265 ~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 265 PWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334567788888888989899999999999999999999999999999999999999999999988888777654
No 275
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.79 E-value=0.27 Score=55.83 Aligned_cols=62 Identities=6% Similarity=-0.079 Sum_probs=54.3
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008251 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (572)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 511 (572)
+|..+..++.+.++++.|...++++++++|++...|..++.+|.+.|++++|.+.++...+.
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 46677777788999999999999999999999989999999999999999999999877654
No 276
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.71 E-value=0.46 Score=43.11 Aligned_cols=75 Identities=20% Similarity=0.253 Sum_probs=63.8
Q ss_pred HhhHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Q 008251 451 NLNNAACKLKLKDYKQAEKLCTKVLD-LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR--DVKLEYKTL 525 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~-~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~--~~~~~l~~l 525 (572)
.+.+|.....+|++.+|..+|.+++. +--+++..+..++++.+.++++-+|...+++..+.+|.-. +-..++.+.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 66899999999999999999999987 4567889999999999999999999999999999988743 334444444
No 277
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.71 E-value=0.35 Score=50.44 Aligned_cols=126 Identities=20% Similarity=0.179 Sum_probs=84.3
Q ss_pred ChHHHHHHHhhhHHHH----H--HHHH---cCcHHHHHHHHHHHHHHhhccCCCCh------HH----HHHHHHHHHHhH
Q 008251 391 NTEEKIEAAGKKKEQG----N--TLFK---AGKYARASKRYEKAVKYIEYDTSFGD------EE----KKQAKALKVACN 451 (572)
Q Consensus 391 ~~~e~~~~a~~~k~~G----~--~~~~---~g~~~~A~~~y~~al~~~~~~~~~~~------e~----~~~~~~~~~~~~ 451 (572)
+.+.+++.|.+..+.- . .+.. .....+|.+.|++|++.-+....... .. ....-....-+.
T Consensus 183 np~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~K 262 (539)
T PF04184_consen 183 NPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAK 262 (539)
T ss_pred CHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhH
Confidence 5566777665443322 1 1222 22367888888888876543321110 00 001111234445
Q ss_pred hhHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCH
Q 008251 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEI-DPDNR 516 (572)
Q Consensus 452 ~nla~~~~k~~~~~~Ai~~~~~al~~~p~--~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l-~P~~~ 516 (572)
..+|.|..++|+.++|++.+...++..|. +....+++..|++.++.|.++.+.+.+.-.+ -|...
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSA 330 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSA 330 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchH
Confidence 68999999999999999999999987774 6789999999999999999999999986433 24443
No 278
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.59 E-value=0.24 Score=38.18 Aligned_cols=69 Identities=14% Similarity=0.236 Sum_probs=55.3
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHh
Q 008251 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (572)
Q Consensus 397 ~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (572)
..+.+..++|..+|.+.+.+.|+..++++++..+... .+-.++-.++.+|...|+|.+++++.-+-++
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~------------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE------------DRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999999999999998766422 2344566788889999999999988876554
Q ss_pred c
Q 008251 477 L 477 (572)
Q Consensus 477 ~ 477 (572)
+
T Consensus 72 ~ 72 (80)
T PF10579_consen 72 I 72 (80)
T ss_pred H
Confidence 3
No 279
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=0.72 Score=44.20 Aligned_cols=90 Identities=17% Similarity=0.111 Sum_probs=68.6
Q ss_pred HHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHh----cC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008251 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLD----LD--SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (572)
Q Consensus 445 ~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~----~~--p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~ 518 (572)
+....+..-++...++.|+-+.|..+++.+-+ ++ ..+.-..-+.+..|...++|-+|...|.+++..||.+..+
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 34555677899999999999999999995432 33 2455677788888889999999999999999999999876
Q ss_pred HHHHHHHHHHHHHHHH
Q 008251 519 KLEYKTLKEKMKEYNK 534 (572)
Q Consensus 519 ~~~l~~l~~~~~~~~~ 534 (572)
...-+.|...++....
T Consensus 289 ~NnKALcllYlg~l~D 304 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKD 304 (366)
T ss_pred hchHHHHHHHHHHHHH
Confidence 6666666555544443
No 280
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.32 E-value=0.34 Score=51.75 Aligned_cols=77 Identities=18% Similarity=0.080 Sum_probs=65.8
Q ss_pred HHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008251 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520 (572)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~------~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~ 520 (572)
...++-|-|.-+++.++|..++++|...+..-|. ..|....++.||+.+.+.|.|.+.++.|-+.+|.+.-.+.
T Consensus 353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~ 432 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQL 432 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 3445558899999999999999999999987654 3688889999999999999999999999999999975555
Q ss_pred HHH
Q 008251 521 EYK 523 (572)
Q Consensus 521 ~l~ 523 (572)
+.-
T Consensus 433 ~~~ 435 (872)
T KOG4814|consen 433 LML 435 (872)
T ss_pred HHH
Confidence 544
No 281
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.27 E-value=0.8 Score=46.88 Aligned_cols=115 Identities=19% Similarity=0.095 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHH-HhhccCCCC------------------hHHHHHHHHHHHHhHhhHHHHHHhc
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVK-YIEYDTSFG------------------DEEKKQAKALKVACNLNNAACKLKL 461 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~-~~~~~~~~~------------------~e~~~~~~~~~~~~~~nla~~~~k~ 461 (572)
...+.+..++.+|+...|+......+. .+....... .............+++-+|.-...+
T Consensus 186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~ 265 (352)
T PF02259_consen 186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL 265 (352)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 345667777888888888888887777 332221000 0012333455667788888877777
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHHhCCCC
Q 008251 462 ------KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL-----------------DLAEFDIKKALEIDPDN 515 (572)
Q Consensus 462 ------~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~-----------------~~A~~~~~~al~l~P~~ 515 (572)
+.++.++..|..+++++|++.++|++.|..+..+=+. ..|+..|-+++.+.+..
T Consensus 266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY 342 (352)
T ss_pred ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence 8899999999999999999999999999888766332 24777777777777773
No 282
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.24 E-value=0.34 Score=56.77 Aligned_cols=99 Identities=10% Similarity=0.056 Sum_probs=78.9
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCC--
Q 008251 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR-- 480 (572)
Q Consensus 403 k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~-- 480 (572)
...|..++..|+|..|...+.+++...+... ......+..++|.++...|+++.|+..+.+++.....
T Consensus 456 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g 525 (903)
T PRK04841 456 ALRAQVAINDGDPEEAERLAELALAELPLTW----------YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD 525 (903)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence 3467788899999999999999998543211 1113344678999999999999999999999875332
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008251 481 ----NVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (572)
Q Consensus 481 ----~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 511 (572)
-..++.++|.++...|++++|...+.+++.+
T Consensus 526 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 526 VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1357788999999999999999999999986
No 283
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=0.51 Score=45.33 Aligned_cols=91 Identities=19% Similarity=0.146 Sum_probs=70.2
Q ss_pred CcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008251 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY 492 (572)
Q Consensus 413 g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~ 492 (572)
+++..|.-.|+..-+..+.. ..+++-+|.|++.+++|++|......+|..+++.+.++-|+-.+-
T Consensus 187 ek~qdAfyifeE~s~k~~~T---------------~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPT---------------PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA 251 (299)
T ss_pred hhhhhHHHHHHHHhcccCCC---------------hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 34666777776655432222 234678999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHH-HHHHhCCCCHHH
Q 008251 493 IQMADLDLAEFDIK-KALEIDPDNRDV 518 (572)
Q Consensus 493 ~~l~~~~~A~~~~~-~al~l~P~~~~~ 518 (572)
..+|.-.++.+.+- +.....|+++-+
T Consensus 252 ~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 252 LHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 99999887776554 444556777544
No 284
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.19 E-value=0.59 Score=53.06 Aligned_cols=142 Identities=8% Similarity=0.012 Sum_probs=91.7
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHh--hcc------------CCCChHHHHHHHHHH--------HHhHhhHHHH
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYI--EYD------------TSFGDEEKKQAKALK--------VACNLNNAAC 457 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~--~~~------------~~~~~e~~~~~~~~~--------~~~~~nla~~ 457 (572)
..+......|.+.|++++|++.|++..+.- |+. ....++-..-.+.+. ...|..+..+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 345666677777888888888887765421 110 000111111112221 1246778888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008251 458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA 537 (572)
Q Consensus 458 ~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~ 537 (572)
+.+.|++++|.+.+++.- ..| +...|..+..++...|+++.|...+++.++++|++......+..+.....+.+++.
T Consensus 472 l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~- 548 (697)
T PLN03081 472 LGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA- 548 (697)
T ss_pred HHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH-
Confidence 999999999998887642 233 56678888899999999999999999999999998666666666655555554443
Q ss_pred HHHHhhh
Q 008251 538 KFYGNMF 544 (572)
Q Consensus 538 ~~~~~~f 544 (572)
+.++.|-
T Consensus 549 ~v~~~m~ 555 (697)
T PLN03081 549 KVVETLK 555 (697)
T ss_pred HHHHHHH
Confidence 2334443
No 285
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.11 E-value=1.1 Score=46.47 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=86.9
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008251 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (572)
Q Consensus 402 ~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (572)
+..-|.---.+++++.|...|.+||.....+ +.+++..|.|-+|.++-+.|....++|+.+-|.-
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~r~---------------itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDYRN---------------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhccccc---------------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 3444555556788999999999999875443 3458889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008251 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (572)
Q Consensus 482 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 516 (572)
-+.||.....-..+|+..-|+..|++-++..|+..
T Consensus 141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq 175 (677)
T KOG1915|consen 141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ 175 (677)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH
Confidence 99999999999999999999999999999999964
No 286
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.83 E-value=0.097 Score=34.81 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=20.0
Q ss_pred HhHhhHHHHHHhcCCHHHHHHHHHHHHhc
Q 008251 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (572)
Q Consensus 449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (572)
.++.|+|.+|..+++|++|+..+.+++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34667777777777777777777777664
No 287
>PLN03218 maturation of RBCL 1; Provisional
Probab=93.69 E-value=1.7 Score=51.27 Aligned_cols=65 Identities=11% Similarity=0.027 Sum_probs=48.6
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCC
Q 008251 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI--DPD 514 (572)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~-p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l--~P~ 514 (572)
.|..+-.+|.+.+++++|++.++...+.+ +.+...|..+..+|.+.|++++|+..|++..+. .|+
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD 648 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Confidence 46667777888888888888888877765 456677777778888888888888888777765 455
No 288
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.69 E-value=1 Score=39.61 Aligned_cols=81 Identities=21% Similarity=0.190 Sum_probs=58.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC----------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008251 454 NAACKLKLKDYKQAEKLCTKVLDLDSR----------------------NVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (572)
Q Consensus 454 la~~~~k~~~~~~Ai~~~~~al~~~p~----------------------~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 511 (572)
.|......++...++..+.+++.+... ...++.+++.++...|++++|+..+++++.+
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 344455667888888888888876522 1256678888999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 008251 512 DPDNRDVKLEYKTLKEKMKEYNK 534 (572)
Q Consensus 512 ~P~~~~~~~~l~~l~~~~~~~~~ 534 (572)
+|-+..+...+-++.........
T Consensus 92 dP~~E~~~~~lm~~~~~~g~~~~ 114 (146)
T PF03704_consen 92 DPYDEEAYRLLMRALAAQGRRAE 114 (146)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHH
T ss_pred CCCCHHHHHHHHHHHHHCcCHHH
Confidence 99998888887777666554443
No 289
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=93.63 E-value=1.1 Score=45.32 Aligned_cols=109 Identities=17% Similarity=0.075 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (572)
.....+..+...|+++.|.+.-..+++..-... + -+=.-.++.+++..=++..++.+..+|+
T Consensus 265 l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----------------L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 265 LVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-----------------L-CRLIPRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-----------------H-HHHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence 334455677788999999999998887432110 0 1112234567888888888889999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008251 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (572)
Q Consensus 481 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~ 528 (572)
++..++-+|..|++.+.|.+|...|+.|++..|+..+ ...+..+...
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~-~~~la~~~~~ 373 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD-YAELADALDQ 373 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHH
Confidence 9999999999999999999999999999998888643 3444444333
No 290
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.60 E-value=1.2 Score=46.04 Aligned_cols=131 Identities=11% Similarity=0.125 Sum_probs=85.6
Q ss_pred HHHHHhhhHHHHHHHHHcCc-HHHHHHHHHHHHHHhhccCCCCh-------------------HH--------------H
Q 008251 395 KIEAAGKKKEQGNTLFKAGK-YARASKRYEKAVKYIEYDTSFGD-------------------EE--------------K 440 (572)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~g~-~~~A~~~y~~al~~~~~~~~~~~-------------------e~--------------~ 440 (572)
+...+..+..-+..+.+.|. =+.|++..+.++..-+.+..... .. .
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 45566667777788888777 55677777766665443221000 00 0
Q ss_pred HHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---
Q 008251 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD--- 517 (572)
Q Consensus 441 ~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~--- 517 (572)
..+.+.-..-++.=|...+..|+|++|.-++.-+.+.+| .+.+|.-+|.|++...+|++|..+|.. +-|++..
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~ds 530 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDS 530 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHH
Confidence 000111122234456677789999999999999999999 999999999999999999999999864 4454332
Q ss_pred -HHHHHHHHHHHH
Q 008251 518 -VKLEYKTLKEKM 529 (572)
Q Consensus 518 -~~~~l~~l~~~~ 529 (572)
+.+.+..|++.+
T Consensus 531 kvqKAl~lCqKh~ 543 (549)
T PF07079_consen 531 KVQKALALCQKHL 543 (549)
T ss_pred HHHHHHHHHHHhh
Confidence 334444444433
No 291
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.44 E-value=0.43 Score=50.45 Aligned_cols=129 Identities=12% Similarity=0.093 Sum_probs=92.8
Q ss_pred hHHHHHHHHH-cCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 008251 402 KKEQGNTLFK-AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (572)
Q Consensus 402 ~k~~G~~~~~-~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (572)
+...+..|++ +|+..+|+.+|..|+-+.+.... ...++.+|..+.+.|.-.+|--.+-.|+..-|.
T Consensus 215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~k-------------di~lLSlaTiL~RaG~sadA~iILhAA~~dA~~ 281 (886)
T KOG4507|consen 215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNK-------------DIALLSLATVLHRAGFSADAAVILHAALDDADF 281 (886)
T ss_pred HHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccc-------------cchhhhHHHHHHHcccccchhheeehhccCCcc
Confidence 3444445544 78999999999999988765432 234778999999999888877777778877676
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHhh
Q 008251 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL---EYKTLKEKMKEYNKKEAKFYGNM 543 (572)
Q Consensus 481 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~---~l~~l~~~~~~~~~~~~~~~~~~ 543 (572)
-..-+|-++.+|..+++|......|..+++.+|.....-. ..-.|..++.+..+++++..+.|
T Consensus 282 ~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~l~~~ 347 (886)
T KOG4507|consen 282 FTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRSLQRT 347 (886)
T ss_pred ccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666999999999999999999999999999988643222 22234445544444444444433
No 292
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.38 E-value=0.29 Score=41.91 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=37.4
Q ss_pred HHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008251 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQ 490 (572)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~ 490 (572)
+..|.+.+|..|+++++|+.++.+++..|+.+|+|..|.--+-.
T Consensus 70 rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ 113 (149)
T KOG3364|consen 70 RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET 113 (149)
T ss_pred chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 34567899999999999999999999999999999887644333
No 293
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.20 E-value=0.52 Score=38.23 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=43.1
Q ss_pred HHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhc
Q 008251 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (572)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (572)
...+.++|..|++.+.+..+.......... ......+.+|+|.++...|++++|+..+++|+.+
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456789999999999999887654332210 1123334667777777777777777777777665
No 294
>PLN03218 maturation of RBCL 1; Provisional
Probab=93.16 E-value=2.6 Score=49.75 Aligned_cols=63 Identities=10% Similarity=-0.043 Sum_probs=47.6
Q ss_pred HhHhhHHHHHHhcCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008251 449 ACNLNNAACKLKLKDYKQAEKLCTKVLD----LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (572)
Q Consensus 449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~----~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 512 (572)
..|+.+..+|.+.+++++|...+.+... +.| +...|.-+..+|.+.|++++|.+.|+...+.+
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 3467777788888888888888887765 234 35667777788888888888888888887765
No 295
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.14 E-value=0.84 Score=47.76 Aligned_cols=55 Identities=18% Similarity=0.136 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHH
Q 008251 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKTLKEKMKEYNKKE 536 (572)
Q Consensus 482 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~--~~~~~~~l~~l~~~~~~~~~~~ 536 (572)
.-+-+|+|.|..++|+.+||++.++..++..|. +..++..|-.+...++.+.+.+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 345578999999999999999999999998887 3456666655544444444333
No 296
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.02 E-value=0.22 Score=32.96 Aligned_cols=30 Identities=33% Similarity=0.268 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008251 482 VKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (572)
Q Consensus 482 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 511 (572)
..++.++|.+|..+|++++|+..+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999875
No 297
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.80 E-value=2 Score=42.67 Aligned_cols=108 Identities=16% Similarity=0.049 Sum_probs=66.2
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCC------------hHH-HHHHH----------HHHHHhHhhHHH
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG------------DEE-KKQAK----------ALKVACNLNNAA 456 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~------------~e~-~~~~~----------~~~~~~~~nla~ 456 (572)
++....+..++.+|++.+|...+.+.|+-.|.+--.. .+. ...+. ....-++-..|.
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 5566677788999999999999999998777543110 000 00000 111223334566
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008251 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKK 507 (572)
Q Consensus 457 ~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~ 507 (572)
|....|-|++|.+..++++++++.+..|..-++.++...+++.++.+...+
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 666666666666666666666666666666666666666666666665543
No 298
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.69 E-value=0.48 Score=38.42 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=48.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008251 457 CKLKLKDYKQAEKLCTKVLDLDSR---------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (572)
Q Consensus 457 ~~~k~~~~~~Ai~~~~~al~~~p~---------~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 515 (572)
-.++.++|..|++.+.+.+..... ..-++.++|.++...|++++|+..++.|+++...+
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 345789999999988888765321 14688999999999999999999999999886553
No 299
>PLN03077 Protein ECB2; Provisional
Probab=92.62 E-value=1.4 Score=51.28 Aligned_cols=134 Identities=10% Similarity=0.078 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHH--hhccCCC------------ChHHHHHHHHH--------HHHhHhhHHHHH
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKY--IEYDTSF------------GDEEKKQAKAL--------KVACNLNNAACK 458 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~--~~~~~~~------------~~e~~~~~~~~--------~~~~~~nla~~~ 458 (572)
.+......+.+.|+.++|++.|++..+. .|+...+ .++-..-.+.+ ....|..+..++
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 3556778888999999999999987653 2221111 01111111111 123566677777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008251 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (572)
Q Consensus 459 ~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~ 536 (572)
.+.|++++|...+++. ...| ++..|--+-.++..-++.+.|....+++++++|++......+..+.....++++..
T Consensus 636 ~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 636 GRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred HhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHH
Confidence 7778888887777664 2334 34555555556666777777777788888888888777777666655555544433
No 300
>PLN03077 Protein ECB2; Provisional
Probab=92.60 E-value=1.8 Score=50.51 Aligned_cols=60 Identities=13% Similarity=0.004 Sum_probs=51.7
Q ss_pred HhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008251 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 510 (572)
|..+-.++...++.+.+....+++++++|++...|..++.+|...|++++|.+..+...+
T Consensus 660 ~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 660 WGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 444444556678999999999999999999999999999999999999999999877754
No 301
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=92.35 E-value=1.8 Score=50.59 Aligned_cols=125 Identities=18% Similarity=0.156 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccC----------------CCC-hHHHHHH----HH--HHHHhHhhHHHH
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT----------------SFG-DEEKKQA----KA--LKVACNLNNAAC 457 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~----------------~~~-~e~~~~~----~~--~~~~~~~nla~~ 457 (572)
-+.+--..+.+.++.+.|.+..++||.-+.... .+. ++...+. -+ -.-++|.-|+-.
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~i 1539 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGI 1539 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 444545566677888888888888887542211 111 1111110 01 112345667888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 008251 458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKTL 525 (572)
Q Consensus 458 ~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~--~~~~~~~l~~l 525 (572)
|.+.+++++|.+.++..++.--+..+.|.+.|..+++.++-++|...+++||+.-|. +.++....+.+
T Consensus 1540 y~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 888999999999999999877788999999999999999999999999999999999 44444444444
No 302
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.27 E-value=0.13 Score=53.06 Aligned_cols=97 Identities=15% Similarity=0.064 Sum_probs=71.6
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHH-HhhccCC-CChH-HHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHH
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVK-YIEYDTS-FGDE-EKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~-~~~~~~~-~~~e-~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al 475 (572)
..-+.+.|..+|+.+.|..++..|.+|++ .+..... .... -..-...-.-.+++|.|..|+..|+.-.|.+++.++.
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV 362 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence 44456889999999999999999999996 3222110 0000 0000111123457899999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhc
Q 008251 476 DLDSRNVKALYRRAQAYIQM 495 (572)
Q Consensus 476 ~~~p~~~ka~~~~g~a~~~l 495 (572)
.....|+..|.|+|.|....
T Consensus 363 ~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999998764
No 303
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.07 E-value=4.6 Score=40.00 Aligned_cols=104 Identities=18% Similarity=0.162 Sum_probs=75.5
Q ss_pred HHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcC-CHHHHHHHHHHHHhc----CC---C
Q 008251 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDL----DS---R 480 (572)
Q Consensus 409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~-~~~~Ai~~~~~al~~----~p---~ 480 (572)
..++|+++.|...|.++-........ ........+++|.|...++.+ +|+.|+.+.++|+++ .. .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~-------~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~ 75 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDP-------DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL 75 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCc-------HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc
Confidence 35789999999999999887742111 112345667889999999999 999999999999887 22 1
Q ss_pred -------CHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHhCCCCHHHH
Q 008251 481 -------NVKALYRRAQAYIQMADLD---LAEFDIKKALEIDPDNRDVK 519 (572)
Q Consensus 481 -------~~ka~~~~g~a~~~l~~~~---~A~~~~~~al~l~P~~~~~~ 519 (572)
..+.+.-++.+|+..+.++ +|...++.+-.--|+.....
T Consensus 76 ~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 76 SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 1367778999999988865 44455555555567765554
No 304
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.96 E-value=1.3 Score=47.42 Aligned_cols=75 Identities=8% Similarity=-0.030 Sum_probs=61.4
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008251 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSR----NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (572)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~----~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~ 524 (572)
.++..|..+...++.+.|+..+++++..... +.-++|.+|.+|+.+.+|++|..+|.+..+.+.-.+.....+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 3678899999999999999999999864332 24578999999999999999999999999987666655555443
No 305
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.63 E-value=1.1 Score=49.66 Aligned_cols=125 Identities=18% Similarity=0.241 Sum_probs=87.8
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhc-------CCHHHH-
Q 008251 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-------KDYKQA- 467 (572)
Q Consensus 396 ~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~-------~~~~~A- 467 (572)
+.......++|-.+...|+|.+|+++|..+|-..+-.-..+.++..+++++...+.-.+.-....+ ...+.+
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence 556677788999999999999999999999988776555556677777777777654444333332 233333
Q ss_pred -HHHHHHHHhcCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008251 468 -EKLCTKVLDLDSRN-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520 (572)
Q Consensus 468 -i~~~~~al~~~p~~-~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~ 520 (572)
+..|=.-..+.|-+ .-|+.-.-.+++++++|..|.....+.+++.|....+.+
T Consensus 1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence 22222223455644 455555566799999999999999999999998765433
No 306
>PRK10941 hypothetical protein; Provisional
Probab=91.48 E-value=1.3 Score=43.47 Aligned_cols=77 Identities=12% Similarity=-0.044 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (572)
.-+.+.=..+.+.++|..|+++-+..+.+.|.++.. +--+|.+|.+++.+..|+.+++.-++.+|
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e---------------~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYE---------------IRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 334555567889999999999999999999876632 44799999999999999999999999999
Q ss_pred CCHHHHHHHHHH
Q 008251 480 RNVKALYRRAQA 491 (572)
Q Consensus 480 ~~~ka~~~~g~a 491 (572)
+.+.+-.-+.+.
T Consensus 247 ~dp~a~~ik~ql 258 (269)
T PRK10941 247 EDPISEMIRAQI 258 (269)
T ss_pred CchhHHHHHHHH
Confidence 998877655544
No 307
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.33 E-value=0.36 Score=31.75 Aligned_cols=30 Identities=23% Similarity=0.220 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008251 483 KALYRRAQAYIQMADLDLAEFDIKKALEID 512 (572)
Q Consensus 483 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 512 (572)
.+|.++|.+.+...+|+.|+.+|+++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467788888888889999999998888753
No 308
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.22 E-value=0.41 Score=46.84 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=64.5
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR-RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~-~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
++...++...+.+.|...-..|.+++..+|.|+..|.. .+.-+...++++.|++.|.++++++|+++.++.++-+.
T Consensus 109 ~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 109 IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 35566666777889999999999999999999998876 55557788999999999999999999999888776554
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.16 E-value=2.5 Score=37.69 Aligned_cols=80 Identities=18% Similarity=-0.014 Sum_probs=61.0
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008251 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (572)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~ 529 (572)
.+..+..+-++.++.+.+...+..+--+.|+++..-.--|..+...++|.+|+..|+.+..-.|....++.++..|...+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 34566666677778888877777777778888888888888888888888888888887777777777777777775543
No 310
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.14 E-value=0.28 Score=45.90 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=52.7
Q ss_pred HHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008251 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (572)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (572)
.+++.++...|.+.|.+|+.+.|.+..- ++.++....|.++++.|...|.++|++||.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~g---------------wfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAG---------------WFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhh---------------hhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4677899999999999999998876544 7899999999999999999999999999965
No 311
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.80 E-value=1.1 Score=45.50 Aligned_cols=98 Identities=13% Similarity=0.122 Sum_probs=76.5
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhc--
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL-- 477 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~-- 477 (572)
..+.+.|..|+..|+++.|+++|.++-+++.... ..+..+.|+-.+-.-+++|.....+.++|...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~k------------hvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~ 218 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAK------------HVINMCLNLILVSIYMGNWGHVLSYISKAESTPD 218 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchH------------HHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCch
Confidence 3467889999999999999999999887766422 23445677777778889999999999998876
Q ss_pred --CC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008251 478 --DS----RNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (572)
Q Consensus 478 --~p----~~~ka~~~~g~a~~~l~~~~~A~~~~~~al 509 (572)
.. -.++...-.|.+++.+++|..|.++|-.+.
T Consensus 219 ~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 219 ANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11 134666778999999999999999886553
No 312
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.68 E-value=9.9 Score=35.06 Aligned_cols=97 Identities=20% Similarity=0.202 Sum_probs=67.3
Q ss_pred cCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHH------HHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCC-CCHH-
Q 008251 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA------LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS-RNVK- 483 (572)
Q Consensus 412 ~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~------~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p-~~~k- 483 (572)
..+...|-..|.++++.............+++.. .-....+.+|..+...++++.|+..++.++..-. .+.+
T Consensus 47 ~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~ 126 (207)
T COG2976 47 VEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKA 126 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHH
Confidence 3445688888999888775443322222222221 1223345778888889999999999999996533 3444
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHH
Q 008251 484 -ALYRRAQAYIQMADLDLAEFDIKKA 508 (572)
Q Consensus 484 -a~~~~g~a~~~l~~~~~A~~~~~~a 508 (572)
+-.|+|++...++.+++|+..+...
T Consensus 127 l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 127 LAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 4469999999999999999998754
No 313
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=90.54 E-value=3 Score=41.37 Aligned_cols=104 Identities=20% Similarity=0.201 Sum_probs=75.0
Q ss_pred HHHHHHHHH-cCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008251 403 KEQGNTLFK-AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (572)
Q Consensus 403 k~~G~~~~~-~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (572)
..-|..-+. .++...|.+.|+.+++..+.+..+ ++.....+.++++.+.|...+++++..-+..
T Consensus 39 ~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~---------------~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~ 103 (280)
T PF05843_consen 39 VAYALMEYYCNKDPKRARKIFERGLKKFPSDPDF---------------WLEYLDFLIKLNDINNARALFERAISSLPKE 103 (280)
T ss_dssp HHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHH---------------HHHHHHHHHHTT-HHHHHHHHHHHCCTSSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHH---------------HHHHHHHHHHhCcHHHHHHHHHHHHHhcCch
Confidence 344444344 678888999999999988765432 4455566778899999999999999986654
Q ss_pred H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008251 482 V---KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (572)
Q Consensus 482 ~---ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~ 521 (572)
. ..|-+...--...|+.+...+..+++.++-|++..+...
T Consensus 104 ~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f 146 (280)
T PF05843_consen 104 KQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELF 146 (280)
T ss_dssp HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 4 466666666777899999999999999999986554443
No 314
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.51 E-value=7.8 Score=35.51 Aligned_cols=77 Identities=17% Similarity=0.086 Sum_probs=61.9
Q ss_pred HHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHH
Q 008251 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDP--DNRDVKLEY 522 (572)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P--~~~~~~~~l 522 (572)
..++..+|..|.+.|+++.|++.|.++.+...+. ...+++.-++.+..+++..+...+.+|-.+-. .+.+.+..+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3457899999999999999999999999876433 67889999999999999999999999887643 344444444
Q ss_pred HH
Q 008251 523 KT 524 (572)
Q Consensus 523 ~~ 524 (572)
..
T Consensus 116 k~ 117 (177)
T PF10602_consen 116 KV 117 (177)
T ss_pred HH
Confidence 43
No 315
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=90.14 E-value=3 Score=48.10 Aligned_cols=111 Identities=11% Similarity=0.055 Sum_probs=81.2
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHh-------cCCHHHHHHHHHHH
Q 008251 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-------LKDYKQAEKLCTKV 474 (572)
Q Consensus 402 ~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k-------~~~~~~Ai~~~~~a 474 (572)
+..-...+...+.|++|+..|.+...-.|...+..+ +.+..|...+. ...|.+|+.-+++.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYE------------AQFRLGITLLEKASEQGDPRDFTQALSEFSYL 545 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchH------------HHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 344556788889999999999998877775443311 12233333332 23577888877765
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 475 l~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
-. .|.-+--|.-+|.+|.++++|+|-+++|.-|++.-|+++.+-.....+
T Consensus 546 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (932)
T PRK13184 546 HG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHL 595 (932)
T ss_pred cC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 43 467788889999999999999999999999999999998776665554
No 316
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=89.92 E-value=1.1 Score=29.12 Aligned_cols=33 Identities=24% Similarity=0.128 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH--HHHHHHhCCCC
Q 008251 483 KALYRRAQAYIQMADLDLAEFD--IKKALEIDPDN 515 (572)
Q Consensus 483 ka~~~~g~a~~~l~~~~~A~~~--~~~al~l~P~~ 515 (572)
+.++-.|..+...|++++|+.. |+-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4567778888888888888888 44777777764
No 317
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=89.65 E-value=2.6 Score=32.58 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=30.9
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhc
Q 008251 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (572)
Q Consensus 397 ~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (572)
..|..+-.+|..+=+.|+|.+|+.+|..|++++-.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 45777888999999999999999999999998755
No 318
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=89.27 E-value=6.6 Score=46.26 Aligned_cols=110 Identities=15% Similarity=0.086 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~ 480 (572)
.+......|-+...|++|.+.|+..++..... ..+|...|...++.++-++|-..+.+||+.-|.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~---------------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQT---------------RKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcch---------------hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 45677778888889999999999888766532 234667777778888878888888888887776
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 481 --NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 481 --~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
|.+..-.-|+.-++.|+-+.++..|+-.+.-.|.-.+++.-+...
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDM 1643 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHH
Confidence 677777778888888888888888888888888776666555443
No 319
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=88.90 E-value=1.6 Score=48.60 Aligned_cols=97 Identities=15% Similarity=0.071 Sum_probs=75.2
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 008251 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (572)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k 483 (572)
-+|-.+++.|++++|..+. +++.....+.. ..+--+-.||..++++++|...|++++..+|+ .+
T Consensus 48 LkaLsl~r~gk~~ea~~~L-e~~~~~~~~D~--------------~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-ee 111 (932)
T KOG2053|consen 48 LKALSLFRLGKGDEALKLL-EALYGLKGTDD--------------LTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EE 111 (932)
T ss_pred HHHHHHHHhcCchhHHHHH-hhhccCCCCch--------------HHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HH
Confidence 4567788899999998443 44444333311 11446789999999999999999999999999 99
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008251 484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (572)
Q Consensus 484 a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~ 516 (572)
-++.+-.||.+-++|.+=.+.--+..+..|+++
T Consensus 112 ll~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~ 144 (932)
T KOG2053|consen 112 LLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA 144 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 999999999999999776666666666788875
No 320
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.76 E-value=8.4 Score=39.23 Aligned_cols=121 Identities=17% Similarity=0.074 Sum_probs=87.3
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHh
Q 008251 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (572)
Q Consensus 397 ~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (572)
..+..+...+..+.+.|+|+.|.....++....+..... ...+.+..|......|+...|+...+..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------LPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445667888888999999999999999988765332211 122355667777778888888887777666
Q ss_pred c-CC---------------------------------CCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHhCCCCH
Q 008251 477 L-DS---------------------------------RNVKALYRRAQAYIQM------ADLDLAEFDIKKALEIDPDNR 516 (572)
Q Consensus 477 ~-~p---------------------------------~~~ka~~~~g~a~~~l------~~~~~A~~~~~~al~l~P~~~ 516 (572)
. .. ...++++.+|.-...+ +.++++...|+.|.+++|+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 1 00 1246777888877777 889999999999999999987
Q ss_pred HHHHHHHHHHHH
Q 008251 517 DVKLEYKTLKEK 528 (572)
Q Consensus 517 ~~~~~l~~l~~~ 528 (572)
.+...++.....
T Consensus 293 k~~~~~a~~~~~ 304 (352)
T PF02259_consen 293 KAWHSWALFNDK 304 (352)
T ss_pred HHHHHHHHHHHH
Confidence 666666554433
No 321
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.48 E-value=12 Score=39.20 Aligned_cols=99 Identities=25% Similarity=0.249 Sum_probs=72.3
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHh-
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD- 476 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~- 476 (572)
.+..+.-.|....--+.|+.|...|..|.+.... ..+...+..|+|..|++.++-+ ++.++++
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~e----d~y~~ld~ 429 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAE----DLYKALDL 429 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHH----HHHHHHHh
Confidence 3445556666666677788888888888875432 3456777889999999976633 2334443
Q ss_pred cCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008251 477 LDSRN----------VKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (572)
Q Consensus 477 ~~p~~----------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 512 (572)
+.|.| ..++|-.|.-.+..+++.||...+.+.|+..
T Consensus 430 i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 430 IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 34442 3678889999999999999999999999987
No 322
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.13 E-value=5.9 Score=43.52 Aligned_cols=92 Identities=24% Similarity=0.194 Sum_probs=73.7
Q ss_pred hHHHHHHHHHcC-----cHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcC---CHHHHHHHHHH
Q 008251 402 KKEQGNTLFKAG-----KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEKLCTK 473 (572)
Q Consensus 402 ~k~~G~~~~~~g-----~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~---~~~~Ai~~~~~ 473 (572)
....|..|++.. ++..|+..|.+|.+.-.. .+.+++|.|+..-. ++..|.+++..
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-----------------~a~~~lg~~~~~g~~~~d~~~A~~yy~~ 353 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-----------------DAQYLLGVLYETGTKERDYRRAFEYYSL 353 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-----------------hHHHHHHHHHHcCCccccHHHHHHHHHH
Confidence 446777777743 788899999998875432 23668999998766 67899999998
Q ss_pred HHhcCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhC
Q 008251 474 VLDLDSRNVKALYRRAQAYIQM----ADLDLAEFDIKKALEID 512 (572)
Q Consensus 474 al~~~p~~~ka~~~~g~a~~~l----~~~~~A~~~~~~al~l~ 512 (572)
|... .+..|+|++|.||..- .+...|..++++|.+..
T Consensus 354 Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 354 AAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 8864 7899999999998853 47899999999999988
No 323
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.08 E-value=2.7 Score=41.76 Aligned_cols=89 Identities=17% Similarity=0.142 Sum_probs=59.1
Q ss_pred CcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCC----CHHHHHHH
Q 008251 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR----NVKALYRR 488 (572)
Q Consensus 413 g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~----~~ka~~~~ 488 (572)
|-|.+|.+.-.+|+++++.+.-. ...+|.++...+++.++.+.-.+.-..-.. ...-|+.-
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa---------------~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~ 253 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWA---------------SHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT 253 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHH---------------HHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH
Confidence 44455555555555555443321 346777777788999998877665433221 24567789
Q ss_pred HHHHHhcCCHHHHHHHHHHHH--HhCCCCH
Q 008251 489 AQAYIQMADLDLAEFDIKKAL--EIDPDNR 516 (572)
Q Consensus 489 g~a~~~l~~~~~A~~~~~~al--~l~P~~~ 516 (572)
|.+|..-++|+.|++.|.+-+ +++.++.
T Consensus 254 Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 254 ALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 999999999999999998765 4555554
No 324
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=87.93 E-value=7.4 Score=43.32 Aligned_cols=114 Identities=14% Similarity=0.036 Sum_probs=76.2
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHH----HhhccCCCChHHHHHHHHH-HHHhHhhHHHHHHhcCCHHHHHHHHH
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVK----YIEYDTSFGDEEKKQAKAL-KVACNLNNAACKLKLKDYKQAEKLCT 472 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~----~~~~~~~~~~e~~~~~~~~-~~~~~~nla~~~~k~~~~~~Ai~~~~ 472 (572)
.-..+.+.+..+-.+++...|++.|+++-. +.....+.....+...+.. -..+|...|+..-..|+.+.|+.+|.
T Consensus 857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 334566677777778888888888887532 1111111111111112221 12467778888888999999999998
Q ss_pred HHHhc---------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008251 473 KVLDL---------------------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (572)
Q Consensus 473 ~al~~---------------------~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 511 (572)
.|-.. ...+.-|.|.+|+-|...|++.+|+..|.+|..+
T Consensus 937 ~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 937 SAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 87442 2345678999999999999999999999887644
No 325
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=87.76 E-value=3 Score=32.33 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=30.4
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhc
Q 008251 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (572)
Q Consensus 397 ~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (572)
..|..+..+|..+=+.|+|.+|+.+|..|++.+-.
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34677888899999999999999999999998764
No 326
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.58 E-value=0.78 Score=27.19 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 008251 483 KALYRRAQAYIQMADLDLAEFDIK 506 (572)
Q Consensus 483 ka~~~~g~a~~~l~~~~~A~~~~~ 506 (572)
.+++.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355666777777777777766554
No 327
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.41 E-value=2.9 Score=42.76 Aligned_cols=52 Identities=15% Similarity=0.332 Sum_probs=40.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008251 487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538 (572)
Q Consensus 487 ~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~~ 538 (572)
.+..||+++++.+-|+....+.+.++|.+..-....+.|.+.+..+.++.+.
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarS 284 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARS 284 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999943333344456667777665543
No 328
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.40 E-value=2.1 Score=29.21 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=20.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008251 486 YRRAQAYIQMADLDLAEFDIKKALE 510 (572)
Q Consensus 486 ~~~g~a~~~l~~~~~A~~~~~~al~ 510 (572)
+.+|.+|..+|+++.|++.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888888884
No 329
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.36 E-value=21 Score=31.92 Aligned_cols=112 Identities=13% Similarity=0.038 Sum_probs=78.6
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (572)
...+.+........++...+...+...--+-|..... -.--|..++..++|.+|+..++.+.+-.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~---------------~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPEL---------------DLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHH---------------HHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 4456677777778888888887776544444443332 4467889999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008251 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (572)
Q Consensus 479 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~ 527 (572)
|..+-+---++.|+..+++.+= +.+-..+++..+ +..+..+.+.+..
T Consensus 75 ~~~p~~kALlA~CL~~~~D~~W-r~~A~evle~~~-d~~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 75 PGFPYAKALLALCLYALGDPSW-RRYADEVLESGA-DPDARALVRALLA 121 (160)
T ss_pred CCChHHHHHHHHHHHHcCChHH-HHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 9888666678999999998642 222334555444 5566666665543
No 330
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.15 E-value=3.4 Score=39.17 Aligned_cols=85 Identities=14% Similarity=0.097 Sum_probs=54.9
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHh
Q 008251 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (572)
Q Consensus 397 ~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (572)
+.|=-++..++......-+..|+..|.+|+..-......- -...+.+.+|..+.++|++++|+.++.+++.
T Consensus 123 rlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~---------~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 123 RLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGM---------DEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCc---------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 3344455555555555556778888888876543311110 1233577899999999999999999999998
Q ss_pred cCCCCH-HHHHHHHH
Q 008251 477 LDSRNV-KALYRRAQ 490 (572)
Q Consensus 477 ~~p~~~-ka~~~~g~ 490 (572)
.-..+. ..+.++|+
T Consensus 194 ~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 194 SKKASKEPKLKDMAR 208 (214)
T ss_pred CCCCCCcHHHHHHHH
Confidence 633222 35555554
No 331
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.79 E-value=7 Score=40.28 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhc-----c-------CC--CChH-HHHHHHHHHHHhHhhHHHHHHhcCCH
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEY-----D-------TS--FGDE-EKKQAKALKVACNLNNAACKLKLKDY 464 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~-----~-------~~--~~~e-~~~~~~~~~~~~~~nla~~~~k~~~~ 464 (572)
..+.+.+..+..+|++..|....++||-.+.. . .. ..-+ ...+.+.+. .+++.......+.|.|
T Consensus 41 dtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ff-lal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 41 DTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFF-LALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHH-HHHHHHHHHHHhcCcH
Confidence 44555666666667776666666666644331 1 00 0001 111222222 3344666777789999
Q ss_pred HHHHHHHHHHHhcCCC
Q 008251 465 KQAEKLCTKVLDLDSR 480 (572)
Q Consensus 465 ~~Ai~~~~~al~~~p~ 480 (572)
..|+++|+-.+.+||.
T Consensus 120 rTAlE~~KlLlsLdp~ 135 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPD 135 (360)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999999998
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.61 E-value=13 Score=41.63 Aligned_cols=34 Identities=21% Similarity=0.502 Sum_probs=29.7
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhc
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (572)
.++.++.-|+.+|++|+|++|...|-+++..+..
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~ 400 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP 400 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence 4567889999999999999999999999986543
No 333
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=86.36 E-value=6.2 Score=30.35 Aligned_cols=36 Identities=25% Similarity=0.194 Sum_probs=31.2
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhcc
Q 008251 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD 432 (572)
Q Consensus 397 ~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~ 432 (572)
..|..+-.++..+=+.|+|.+|+.+|++|++.+-..
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 457778889999999999999999999999987643
No 334
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=86.03 E-value=5 Score=30.96 Aligned_cols=60 Identities=22% Similarity=0.204 Sum_probs=40.0
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCC-CChHHHHHHHHHHHHhHhhHH
Q 008251 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-FGDEEKKQAKALKVACNLNNA 455 (572)
Q Consensus 396 ~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~-~~~e~~~~~~~~~~~~~~nla 455 (572)
+..|..+..+|...=..|+|.+|+.+|..+++++-.... ..++.....-..+..-|+.+|
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RA 63 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 345677788889999999999999999999998765332 223333333333444444444
No 335
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=85.52 E-value=4.9 Score=39.04 Aligned_cols=65 Identities=20% Similarity=0.209 Sum_probs=49.3
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHH
Q 008251 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (572)
Q Consensus 402 ~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al 475 (572)
..+.|.++|..|+|+.|+..|+.++....... ...+...++..+..|+.++++.+..+..|-+.+
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg---------W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREG---------WWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 35788999999999999999999865443221 224566667788999999999998888886655
No 336
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=85.40 E-value=4.3 Score=31.29 Aligned_cols=36 Identities=25% Similarity=0.118 Sum_probs=31.5
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhc
Q 008251 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (572)
Q Consensus 396 ~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (572)
+..|..+..+|...=..|+|++|+.+|..|++.+-.
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 456778888999999999999999999999997654
No 337
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=85.35 E-value=4.1 Score=30.74 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=30.4
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhc
Q 008251 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (572)
Q Consensus 397 ~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (572)
..|..+..+|..+=+.|+|.+|+..|.+|++.+-.
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45777888999999999999999999999987653
No 338
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=85.34 E-value=5.9 Score=30.48 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=31.5
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhc
Q 008251 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (572)
Q Consensus 396 ~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (572)
+..|..+..+|...=..|+|++|+.+|..|++.+-.
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999999999999997654
No 339
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=85.08 E-value=11 Score=36.05 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=68.6
Q ss_pred HHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCC-HHHHH-HHHHHHHh-c-CCCCHHHH
Q 008251 410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-YKQAE-KLCTKVLD-L-DSRNVKAL 485 (572)
Q Consensus 410 ~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~-~~~Ai-~~~~~al~-~-~p~~~ka~ 485 (572)
|..|+|+.|++.-.-||+..-..+.-. ......+...-.++-|....+.|. ++-.. ..+..+.. . -|+.+.|-
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f---~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAK 170 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQF---RRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAK 170 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccc---cCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHH
Confidence 445899999999999998643332110 011223333334556666666664 22211 11222211 1 14555555
Q ss_pred HHH--HHHHH---------hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008251 486 YRR--AQAYI---------QMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (572)
Q Consensus 486 ~~~--g~a~~---------~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~ 531 (572)
+.+ |.+++ ..++...|+.+|++|+.++|+- .++..+.++.++++.
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~lr~ 226 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRLKA 226 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHhh
Confidence 544 44442 3457789999999999999874 577778888777653
No 340
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.99 E-value=20 Score=39.91 Aligned_cols=116 Identities=19% Similarity=0.085 Sum_probs=87.8
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccC-------CCC----hHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHH
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SFG----DEEKKQAKALKVACNLNNAACKLKLKDYKQAE 468 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-------~~~----~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai 468 (572)
-.+.--|......+...+|.+.+.+|++...... ..+ .+...-...++..+++.++.|.+-+++|..|.
T Consensus 302 L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~ 381 (608)
T PF10345_consen 302 LVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKAT 381 (608)
T ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 3344557778888888899999999998776543 111 12344556678888899999999999999999
Q ss_pred HHHHHHHhcC---CC------CHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHhCCCC
Q 008251 469 KLCTKVLDLD---SR------NVKALYRRAQAYIQMADLDLAEFDIK--------KALEIDPDN 515 (572)
Q Consensus 469 ~~~~~al~~~---p~------~~ka~~~~g~a~~~l~~~~~A~~~~~--------~al~l~P~~ 515 (572)
.....+.... |. .+..+|-.|..+...|+.+.|...|. .+....+.+
T Consensus 382 ~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~ 445 (608)
T PF10345_consen 382 QELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFR 445 (608)
T ss_pred HHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcch
Confidence 9888776543 22 47889999999999999999999998 555555554
No 341
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.50 E-value=28 Score=37.45 Aligned_cols=115 Identities=19% Similarity=0.229 Sum_probs=66.2
Q ss_pred chhhHHHHHHhccCCCcEEEEEEcCCCccCCccccccccCCCCCCcEEEEEEEEEeeecccccCCChHHHHHHHhhhHHH
Q 008251 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQ 405 (572)
Q Consensus 326 ~vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~IeLl~~~~~~~~~~~~~~e~~~~a~~~k~~ 405 (572)
+.-..+..++..|.++....+.++.-|+ ....+..|..++.+
T Consensus 256 qaq~~F~~av~~~d~n~v~~lL~ssPYH--------------------------------------vdsLLqva~~~r~q 297 (665)
T KOG2422|consen 256 QAQRDFYLAVIVHDPNNVLILLISSPYH--------------------------------------VDSLLQVADIFRFQ 297 (665)
T ss_pred HHHHHHHHHHhhcCCcceeeeeccCCcc--------------------------------------hhHHHHHHHHHHHh
Confidence 3445577788888888887776654322 22345556666666
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHh--hccC----CCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008251 406 GNTLFKAGKYARASKRYEKAVKYI--EYDT----SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (572)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~--~~~~----~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (572)
|..-..++-.++|+-.+.+|+.-. +... .+...+ -+.+...+| .--+...+.|.|..|.++|.-.+.++|
T Consensus 298 gD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~e---NR~FyL~l~-r~m~~l~~RGC~rTA~E~cKlllsLdp 373 (665)
T KOG2422|consen 298 GDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPE---NRQFYLALF-RYMQSLAQRGCWRTALEWCKLLLSLDP 373 (665)
T ss_pred cchhhHHHHHHHHHHHHHHHhccccccccccccCcccchh---hHHHHHHHH-HHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 666666566666666666666421 1100 111111 112222222 222333467999999999999999999
Q ss_pred C-CH
Q 008251 480 R-NV 482 (572)
Q Consensus 480 ~-~~ 482 (572)
. ++
T Consensus 374 ~eDP 377 (665)
T KOG2422|consen 374 SEDP 377 (665)
T ss_pred cCCc
Confidence 7 54
No 342
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=84.38 E-value=7.8 Score=30.18 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=51.6
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccC------CCChHHHHHHHHHHHHhHhhHHHHHHhc
Q 008251 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT------SFGDEEKKQAKALKVACNLNNAACKLKL 461 (572)
Q Consensus 396 ~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~------~~~~e~~~~~~~~~~~~~~nla~~~~k~ 461 (572)
.+.|-.+.++|..+=..|+-+.|+..|+++++.+.... ....++++.++.++.+.-.|+..+-.++
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL 76 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL 76 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677888899999899999999999999999875432 3345788888888888877877766554
No 343
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=84.28 E-value=10 Score=32.02 Aligned_cols=74 Identities=18% Similarity=0.186 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhc
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (572)
-.+-.....+-..|+|++++..-.+||.++...-+...++-+ +-+.+-+++|.++--+|..++|+..++.+-++
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGk----lWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGK----LWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHH----HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccch----hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 344455667788999999999999999998876555443332 33556779999999999999999999998764
No 344
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=84.13 E-value=23 Score=35.14 Aligned_cols=105 Identities=24% Similarity=0.085 Sum_probs=74.4
Q ss_pred hhHHHHHHHHH----cCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhc-----C--CHHHHHH
Q 008251 401 KKKEQGNTLFK----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----K--DYKQAEK 469 (572)
Q Consensus 401 ~~k~~G~~~~~----~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~-----~--~~~~Ai~ 469 (572)
.....|..++. ..++.+|...|.+|.+.-.... ..+.++++.+|..- - +...|+.
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a--------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~ 176 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA--------------ALAMYRLGLAYLSGLQALAVAYDDKKALY 176 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH--------------HHHHHHHHHHHHcChhhhcccHHHHhHHH
Confidence 45556666666 4489999999999987533211 22355777777663 2 2347899
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008251 470 LCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (572)
Q Consensus 470 ~~~~al~~~p~~~ka~~~~g~a~~~----l~~~~~A~~~~~~al~l~P~~~~~~~~l~ 523 (572)
.+.++-... ++.+.+++|.+|.. ..++.+|..+|++|.+... ......+.
T Consensus 177 ~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 177 LYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 998887764 89999999988865 4589999999999998876 33444444
No 345
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.11 E-value=14 Score=38.84 Aligned_cols=101 Identities=23% Similarity=0.159 Sum_probs=80.2
Q ss_pred HHhhhHHHHHHHHH-cCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcC-CHHHHHHHHHHHH
Q 008251 398 AAGKKKEQGNTLFK-AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVL 475 (572)
Q Consensus 398 ~a~~~k~~G~~~~~-~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~-~~~~Ai~~~~~al 475 (572)
.|....+.|..+|. ..+++.|..+.++|..+....+.+. ..+-.++..+|.||.... .+..|.....+++
T Consensus 45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--------dvKf~a~SlLa~lh~~~~~s~~~~KalLrkai 116 (629)
T KOG2300|consen 45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--------DVKFQAASLLAHLHHQLAQSFPPAKALLRKAI 116 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--------hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 35566677776655 8999999999999998876655441 234445678899999888 8999999999999
Q ss_pred hcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008251 476 DLDSRN----VKALYRRAQAYIQMADLDLAEFDIK 506 (572)
Q Consensus 476 ~~~p~~----~ka~~~~g~a~~~l~~~~~A~~~~~ 506 (572)
++..++ -|.++.+++.+.--.+|.-|.+.+.
T Consensus 117 elsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 117 ELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred HHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 987765 4788899999999999998888753
No 346
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.97 E-value=27 Score=34.79 Aligned_cols=90 Identities=21% Similarity=0.301 Sum_probs=66.4
Q ss_pred HHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCC------C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CC
Q 008251 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR------N--VKALYRRAQAYIQMADLDLAEFDIKKALEI--DP 513 (572)
Q Consensus 444 ~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~------~--~ka~~~~g~a~~~l~~~~~A~~~~~~al~l--~P 513 (572)
.+....+.+.+|..|-+.++|..|...+. ++.++.. + ...+.|.|++|+..++-.+|..+..++--+ +.
T Consensus 99 eEqv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~ 177 (399)
T KOG1497|consen 99 EEQVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES 177 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc
Confidence 34566778899999999999999877653 3344331 1 245679999999999999999999887543 55
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 008251 514 DNRDVKLEYKTLKEKMKEYNK 534 (572)
Q Consensus 514 ~~~~~~~~l~~l~~~~~~~~~ 534 (572)
.|....-+++.|..+.-..+.
T Consensus 178 ~Ne~Lqie~kvc~ARvlD~kr 198 (399)
T KOG1497|consen 178 SNEQLQIEYKVCYARVLDYKR 198 (399)
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 788888888888776544443
No 347
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=83.94 E-value=20 Score=36.72 Aligned_cols=77 Identities=19% Similarity=0.131 Sum_probs=60.5
Q ss_pred HHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
+..++...|...+ .-+...|..+..+++++.|+.+-+-.--+.+|++-++..++-..++.+.+.+|. +++...+..+
T Consensus 229 rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~a 305 (531)
T COG3898 229 RAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVRA 305 (531)
T ss_pred HHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHHh
Confidence 3334444444433 346899999999999999999999999999999999999999999999999986 4555555443
No 348
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=83.62 E-value=3.6 Score=40.44 Aligned_cols=62 Identities=19% Similarity=0.075 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008251 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (572)
Q Consensus 467 Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~ 528 (572)
|+.+|.+|+.+.|++...|..+|..+...++.-.|+-+|-+++-..--.+.++..+..+-.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999997654456677777766444
No 349
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=83.02 E-value=8.4 Score=29.54 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=29.9
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhc
Q 008251 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (572)
Q Consensus 397 ~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (572)
..|..+..+|...=+.|+|++|+.+|..|++.+-.
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45667778888888999999999999999997654
No 350
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.71 E-value=11 Score=35.32 Aligned_cols=70 Identities=14% Similarity=0.069 Sum_probs=59.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 456 ~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
..+++.+...+|+.....-++..|.+...-.-+-+.|.-.|+|++|...++-+-+++|+...-..+++.+
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~l 78 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHL 78 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 3456778899999999999999999988888888889999999999999999999999986544444433
No 351
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.48 E-value=3.8 Score=42.52 Aligned_cols=134 Identities=16% Similarity=0.185 Sum_probs=76.3
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 008251 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL 485 (572)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~ 485 (572)
-..+.-.|+|..|++..+. +++... .-......-.+++++..|-||+.+++|.+|++.+..+|-.-...-..+
T Consensus 129 lRvh~LLGDY~~Alk~l~~-idl~~~------~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~ 201 (404)
T PF10255_consen 129 LRVHCLLGDYYQALKVLEN-IDLNKK------GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQY 201 (404)
T ss_pred HHHHHhccCHHHHHHHhhc-cCcccc------hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3445556777777766543 111110 011122344677899999999999999999999999886421111122
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhc
Q 008251 486 YRRAQAYIQ-MADLDLAEFDIKKALEIDPD--NRDVKLEYKT-LKEKMKEYNKKEAKFYGNMFAK 546 (572)
Q Consensus 486 ~~~g~a~~~-l~~~~~A~~~~~~al~l~P~--~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~f~~ 546 (572)
..+.--+-. .+..|.....+--++.+.|. +..+...++. ...++.+........|..+|..
T Consensus 202 ~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~ 266 (404)
T PF10255_consen 202 HQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSF 266 (404)
T ss_pred ccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHh
Confidence 222222222 34456677777778888886 3444444432 2223333333355678888864
No 352
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=82.48 E-value=3.1 Score=36.45 Aligned_cols=47 Identities=28% Similarity=0.254 Sum_probs=33.3
Q ss_pred HhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 008251 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD 497 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~ 497 (572)
.+.+|...+..++|..|++.++.++..+|+|..|..-++.+|.+++.
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 45667777777888888888888888888888877777777776664
No 353
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=82.45 E-value=39 Score=34.83 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 487 ~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
-++.|..-.+++++|+.++++++++.|.......-++.+
T Consensus 310 Tl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni 348 (374)
T PF13281_consen 310 TLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENI 348 (374)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHH
Confidence 456667778888999999999998888887666655554
No 354
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.87 E-value=38 Score=37.70 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=86.4
Q ss_pred ccCCChHHHHHHHhhhHHHHHHHH-HcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHH
Q 008251 387 SWDMNTEEKIEAAGKKKEQGNTLF-KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465 (572)
Q Consensus 387 ~~~~~~~e~~~~a~~~k~~G~~~~-~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~ 465 (572)
.+.++++. .|......|..++ ...+++.|.....+++.+... ... ..++-.+.+-++.++.+.+...
T Consensus 50 ~~~l~p~~---ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~--------~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 50 QFKLSPRQ---EARVRLRLASILLEETENLDLAETYLEKAILLCER-HRL--------TDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred cCCCCHHH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cch--------HHHHHHHHHHHHHHHHhcCHHH
Confidence 34444433 4666778888887 588999999999999988766 222 3445556667799998888777
Q ss_pred HHHHHHHHHHhcCCC----CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhC--CCCHHHHHH
Q 008251 466 QAEKLCTKVLDLDSR----NVKALYRRAQAYI--QMADLDLAEFDIKKALEID--PDNRDVKLE 521 (572)
Q Consensus 466 ~Ai~~~~~al~~~p~----~~ka~~~~g~a~~--~l~~~~~A~~~~~~al~l~--P~~~~~~~~ 521 (572)
|+..|+++++...+ .....||.-++.+ ..+++..|++.++....+. ..+..+.-.
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 99999999987655 4455555543422 2379999999999988876 455544433
No 355
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.83 E-value=14 Score=32.64 Aligned_cols=78 Identities=12% Similarity=-0.057 Sum_probs=53.5
Q ss_pred hhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008251 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (572)
Q Consensus 452 ~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~ 529 (572)
.....+.+...+.+.+.......--+.|+++..-.--|..|...|+|++|+..|+...+-.+...-.+.++..|...+
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 344445555677777777666666667777777777777777777777777777777766666666666666665544
No 356
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=81.67 E-value=17 Score=28.00 Aligned_cols=19 Identities=16% Similarity=0.083 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhCCCCHH
Q 008251 499 DLAEFDIKKALEIDPDNRD 517 (572)
Q Consensus 499 ~~A~~~~~~al~l~P~~~~ 517 (572)
.+|++.|.+++...|++..
T Consensus 30 ~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 30 KKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHhCCChHH
Confidence 3444446666667777654
No 357
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=81.54 E-value=2.3 Score=27.93 Aligned_cols=28 Identities=18% Similarity=0.143 Sum_probs=25.7
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHHHHHhc
Q 008251 450 CNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (572)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (572)
+|..||.+-+..++|..|+.++.++|++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5778999999999999999999999986
No 358
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=81.18 E-value=46 Score=34.31 Aligned_cols=99 Identities=14% Similarity=0.040 Sum_probs=73.6
Q ss_pred HHhHhhHHHHHHhcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHH-HHhCCCCHHHH
Q 008251 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDL----DSRNVKALYRRAQAYIQ---MADLDLAEFDIKKA-LEIDPDNRDVK 519 (572)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~----~p~~~ka~~~~g~a~~~---l~~~~~A~~~~~~a-l~l~P~~~~~~ 519 (572)
..+..|+=.+|....+|+.-+...+..-.+ -+++....+..|.|+.+ .|+.++|+..+..+ ....+.+++..
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 344568888999999999999988776555 34567777888999999 99999999999994 45566678888
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHhhhhc
Q 008251 520 LEYKTLKEKMKEY--------NKKEAKFYGNMFAK 546 (572)
Q Consensus 520 ~~l~~l~~~~~~~--------~~~~~~~~~~~f~~ 546 (572)
-.++++.+.+-.. ..+...+|++-|.-
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 8888887665322 23344667777644
No 359
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=80.94 E-value=7.4 Score=31.21 Aligned_cols=48 Identities=19% Similarity=0.103 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008251 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (572)
Q Consensus 419 ~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (572)
+...++++...|.+. .+.+.+|.+++..|+|+.|+..+-.++..++++
T Consensus 8 ~~al~~~~a~~P~D~---------------~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDL---------------DARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-H---------------HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 455666666666543 337799999999999999999999999998876
No 360
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=80.92 E-value=5 Score=42.34 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008251 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM---ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (572)
Q Consensus 462 ~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l---~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~ 535 (572)
..+..|+.+|.+++...|.....|-++|.++++. ++--.|+.++..|++++|....+...|.++...+....++
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence 4578899999999999999999999999999986 4567899999999999999977777777776665554443
No 361
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=80.56 E-value=12 Score=38.53 Aligned_cols=101 Identities=22% Similarity=0.154 Sum_probs=72.2
Q ss_pred CcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhc--------------C
Q 008251 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL--------------D 478 (572)
Q Consensus 413 g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~--------------~ 478 (572)
..|.++...|..++....... --..-.....++..++.++.++..+|++..|...+++||-. +
T Consensus 8 ~~Y~~~q~~F~~~v~~~Dp~~---l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~ 84 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSHDPNA---LINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSN 84 (360)
T ss_pred HHHHHHHHHHHHHHHccCHHH---HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 346666666666665321100 00011222346677899999999999999999999998631 1
Q ss_pred CC------------C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CH
Q 008251 479 SR------------N---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD-NR 516 (572)
Q Consensus 479 p~------------~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~-~~ 516 (572)
+. | -.|+||....+.+.|-+.-|.++++-.+.+||. ++
T Consensus 85 ~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 85 LTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred cccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence 11 1 268899999999999999999999999999999 55
No 362
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.39 E-value=24 Score=38.77 Aligned_cols=113 Identities=18% Similarity=0.040 Sum_probs=78.3
Q ss_pred HhhhHHHHHHHHH-----cCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcC-----CHHHHH
Q 008251 399 AGKKKEQGNTLFK-----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-----DYKQAE 468 (572)
Q Consensus 399 a~~~k~~G~~~~~-----~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~-----~~~~Ai 468 (572)
+......|..++. .+|.+.|+..|+.|.+-... ........+.+.+|.||++-. ++..|+
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~----------~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~ 313 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKK----------AATKGLPPAQYGLGRLYLQGLGVEKIDYEKAL 313 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHH----------HHhhcCCccccHHHHHHhcCCCCccccHHHHH
Confidence 3445556666654 35899999999999872100 000001223678999999843 788899
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 469 KLCTKVLDLDSRNVKALYRRAQAYIQMA---DLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 469 ~~~~~al~~~p~~~ka~~~~g~a~~~l~---~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
.++.++-.+ .++.+.|++|.+|..-. ++..|..+|..|...- +..+...+..|
T Consensus 314 ~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~ 369 (552)
T KOG1550|consen 314 KLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALC 369 (552)
T ss_pred HHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHH
Confidence 999988875 68899999999999866 6789999999988643 43445555544
No 363
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=80.27 E-value=9.6 Score=33.42 Aligned_cols=53 Identities=21% Similarity=0.205 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008251 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (572)
Q Consensus 480 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~ 532 (572)
.-......+++.++..|+|.-|...+..++..+|+|.+++.+...+...+...
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 35577788999999999999999999999999999999999988876665543
No 364
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=79.85 E-value=18 Score=27.84 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=30.8
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhc
Q 008251 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (572)
Q Consensus 396 ~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (572)
+..|..+..+|..+=..|+|++|+.+|..|++.+-.
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345677888899999999999999999999997654
No 365
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.58 E-value=8.2 Score=37.94 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=46.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008251 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKK 507 (572)
Q Consensus 454 la~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~ 507 (572)
-+.-.+..+++..|...+..++..+|.+..+..-++.||...|+.+.|...|..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 344455779999999999999999999999999999999999999887766643
No 366
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=79.29 E-value=19 Score=34.90 Aligned_cols=83 Identities=18% Similarity=0.111 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHH
Q 008251 417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR------NVKALYRRAQ 490 (572)
Q Consensus 417 ~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~------~~ka~~~~g~ 490 (572)
..+..+++|......... ..+...+...+|.-|++.|+|++|+..++.+...... ....+.++..
T Consensus 156 ~iI~lL~~A~~~f~~~~~---------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~ 226 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQ---------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLE 226 (247)
T ss_pred HHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 455666666655443322 2445556778999999999999999999998654321 2467788999
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 008251 491 AYIQMADLDLAEFDIKKA 508 (572)
Q Consensus 491 a~~~l~~~~~A~~~~~~a 508 (572)
|+..+|+.+..+...-+.
T Consensus 227 Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 227 CAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 999999988887765443
No 367
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.83 E-value=2.8 Score=24.77 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=20.6
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHH
Q 008251 450 CNLNNAACKLKLKDYKQAEKLCT 472 (572)
Q Consensus 450 ~~~nla~~~~k~~~~~~Ai~~~~ 472 (572)
+++++|..+..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 46799999999999999998875
No 368
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.75 E-value=57 Score=33.04 Aligned_cols=88 Identities=10% Similarity=0.098 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHH-HHHHHHHHHH
Q 008251 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK-MKE-YNKKEAKFYG 541 (572)
Q Consensus 464 ~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~-~~~-~~~~~~~~~~ 541 (572)
.+..+..+++||+.+|++.+.+..+-.+..++.+-++..+-+++++..+|++..+...+-...+. ... .-..-+..|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 46778889999999999999999999999999999999999999999999997665554433222 111 1234455666
Q ss_pred hhhhcccCCC
Q 008251 542 NMFAKMSMFG 551 (572)
Q Consensus 542 ~~f~~~~~~~ 551 (572)
+.+..+....
T Consensus 127 ~~l~~L~~~~ 136 (321)
T PF08424_consen 127 KCLRALSRRR 136 (321)
T ss_pred HHHHHHHHhh
Confidence 6665555433
No 369
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=77.29 E-value=14 Score=41.29 Aligned_cols=104 Identities=14% Similarity=0.041 Sum_probs=65.2
Q ss_pred HHHHHcCcHHHHHHHHHHHHHHhhcc-----CCCChHHHHH----HHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHH---
Q 008251 407 NTLFKAGKYARASKRYEKAVKYIEYD-----TSFGDEEKKQ----AKALKVACNLNNAACKLKLKDYKQAEKLCTKV--- 474 (572)
Q Consensus 407 ~~~~~~g~~~~A~~~y~~al~~~~~~-----~~~~~e~~~~----~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a--- 474 (572)
......|-.++|...|.++-++.--+ ...+.+..+- -+-.+...|+|.|.-+...++-..|+++|+++
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~h 887 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVH 887 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCCh
Confidence 34456677777887777765532111 1111111100 01123345789999888899999999999885
Q ss_pred -------HhcCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008251 475 -------LDLDSR----------NVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (572)
Q Consensus 475 -------l~~~p~----------~~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 510 (572)
|.-+|. +.+.|-+.|+-+...|+.+.|+..|..|-.
T Consensus 888 afev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 888 AFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 222343 235556678888889999999999987754
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.23 E-value=18 Score=28.03 Aligned_cols=59 Identities=15% Similarity=-0.002 Sum_probs=44.0
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008251 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL---YRRAQAYIQMADLDLAEFDIKKALEI 511 (572)
Q Consensus 453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~---~~~g~a~~~l~~~~~A~~~~~~al~l 511 (572)
..+.-++..++..+|+..+.+||+..++....+ =.+..||...|+|.+++++.-+-+.+
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445577889999999999999888766543 35677888899999888776554443
No 371
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=77.10 E-value=4.7 Score=31.02 Aligned_cols=35 Identities=23% Similarity=0.062 Sum_probs=30.4
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhc
Q 008251 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (572)
Q Consensus 397 ~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (572)
..|..+..+|...=..|+|++|++.|..|++++-.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 45677788888889999999999999999998765
No 372
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=77.01 E-value=26 Score=37.79 Aligned_cols=75 Identities=15% Similarity=0.018 Sum_probs=44.5
Q ss_pred HhHhhHHHHHHhcCC-HHHHHHHHHHHHhcCCCCHHHHHHH------HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008251 449 ACNLNNAACKLKLKD-YKQAEKLCTKVLDLDSRNVKALYRR------AQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (572)
Q Consensus 449 ~~~~nla~~~~k~~~-~~~Ai~~~~~al~~~p~~~ka~~~~------g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~ 521 (572)
.++.|++.+....+. +..+...+..+....|+|..++..+ ++....+++..+|...+.++..+.|.+..+...
T Consensus 102 ~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~ 181 (620)
T COG3914 102 PAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGA 181 (620)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhH
Confidence 345566665555543 3344444445666677766655555 666666666677777777777777777444444
Q ss_pred HH
Q 008251 522 YK 523 (572)
Q Consensus 522 l~ 523 (572)
+-
T Consensus 182 ~~ 183 (620)
T COG3914 182 LM 183 (620)
T ss_pred HH
Confidence 43
No 373
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=76.55 E-value=9.8 Score=37.04 Aligned_cols=71 Identities=15% Similarity=0.025 Sum_probs=59.8
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH
Q 008251 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL 485 (572)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~ 485 (572)
=..+...+++..|.+.-.+.+.++|.++.. ..-+|.+|.+++.+.-|+.++...++..|+.+.+-
T Consensus 188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~e---------------irDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 188 KAALLRELQWELALRVAERLLDLNPEDPYE---------------IRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHhhchHHHHHHHHHHHhhCCCChhh---------------ccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 346777899999999999999998887643 44799999999999999999999999999998776
Q ss_pred HHHHHH
Q 008251 486 YRRAQA 491 (572)
Q Consensus 486 ~~~g~a 491 (572)
.-++..
T Consensus 253 ~ir~~l 258 (269)
T COG2912 253 MIRAQL 258 (269)
T ss_pred HHHHHH
Confidence 655543
No 374
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=76.54 E-value=10 Score=38.90 Aligned_cols=69 Identities=25% Similarity=0.122 Sum_probs=55.2
Q ss_pred HhHhhHHHHHHhcCCHHHHHHHHHHHHh--cCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008251 449 ACNLNNAACKLKLKDYKQAEKLCTKVLD--LDSRN--VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (572)
Q Consensus 449 ~~~~nla~~~~k~~~~~~Ai~~~~~al~--~~p~~--~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~ 517 (572)
.+.+.+-.+|+..+.|+.|-+...++.- .+.+| +..+|..|....-..+|..|.++|-+|+...|++..
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh
Confidence 3445567788888899999988887753 22333 677889999999999999999999999999998643
No 375
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=75.87 E-value=42 Score=36.70 Aligned_cols=116 Identities=9% Similarity=0.053 Sum_probs=64.5
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCC---CCh-HHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHH
Q 008251 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS---FGD-EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC 471 (572)
Q Consensus 396 ~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~---~~~-e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~ 471 (572)
-+.|..+.+-|..-.+..+|+.|+....+|+.. |.... +.+ +..+..---...++...+...-..|-++.+...|
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 345777888888888889999999999988753 22111 000 0001111112233445555555556666666666
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008251 472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (572)
Q Consensus 472 ~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 512 (572)
+++|++.--.+..-.|-|.-+....-|++|-+.|++.+.|.
T Consensus 501 driidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 501 DRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 66666655555555555555555555555555555555443
No 376
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=75.84 E-value=4.3 Score=42.12 Aligned_cols=58 Identities=22% Similarity=0.255 Sum_probs=46.7
Q ss_pred hhHHHHHHhcCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008251 452 LNNAACKLKLKDYKQAEKLCTKVLDLD---------SRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (572)
Q Consensus 452 ~nla~~~~k~~~~~~Ai~~~~~al~~~---------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 510 (572)
.-|..+|.-+|+|..|++..+.+ +++ +.++..+|..|-||+.+++|.+|++.|...|.
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777899999999987543 111 34678999999999999999999999988874
No 377
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=74.65 E-value=8.1 Score=37.94 Aligned_cols=62 Identities=15% Similarity=0.033 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 008251 418 ASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ 494 (572)
Q Consensus 418 A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~ 494 (572)
|...|.+|+.+.|..... |+.+|..+...+++-.|+-+|-+++-....++.|.-++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p---------------~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNP---------------YNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHH---------------HHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCc---------------ccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 788999999999987643 88999999999999999999999998766678888888888777
No 378
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=74.52 E-value=31 Score=37.23 Aligned_cols=69 Identities=23% Similarity=0.030 Sum_probs=51.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHhCCCCHHHHHHH
Q 008251 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI-KKALEIDPDNRDVKLEY 522 (572)
Q Consensus 454 la~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~-~~al~l~P~~~~~~~~l 522 (572)
++..+..++....+.-....++..+|++..++.+++.+....+....|...+ +.+....|+|.++...+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence 6666677777777777788888888888888888888887777666555444 44888888887766655
No 379
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=73.88 E-value=35 Score=33.76 Aligned_cols=80 Identities=24% Similarity=0.117 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008251 416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (572)
Q Consensus 416 ~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k----~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a 491 (572)
..|+..|.+|.... ...+.++++.||.. ..++.+|..++.++-+... ..+.|+.+ +
T Consensus 172 ~~A~~~~~~aa~~~-----------------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~ 231 (292)
T COG0790 172 KKALYLYRKAAELG-----------------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-L 231 (292)
T ss_pred HhHHHHHHHHHHhc-----------------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-H
Confidence 36777777766543 23457799989876 4589999999999998766 89999999 6
Q ss_pred HHhcC---------------CHHHHHHHHHHHHHhCCCC
Q 008251 492 YIQMA---------------DLDLAEFDIKKALEIDPDN 515 (572)
Q Consensus 492 ~~~l~---------------~~~~A~~~~~~al~l~P~~ 515 (572)
+...| +...|..++.++....+..
T Consensus 232 ~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 232 MYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 66555 7788888888887776665
No 380
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.45 E-value=25 Score=40.46 Aligned_cols=107 Identities=16% Similarity=0.157 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCC-
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS- 479 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p- 479 (572)
....-|..+|..+.|+.|.-.|...-. +..+|.....+|+|+.|+...++|-....
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~vSN-----------------------~a~La~TLV~LgeyQ~AVD~aRKAns~ktW 1252 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSNVSN-----------------------FAKLASTLVYLGEYQGAVDAARKANSTKTW 1252 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHHhhh-----------------------HHHHHHHHHHHHHHHHHHHHhhhccchhHH
Confidence 345678899999999988888875432 55788888899999999999888754311
Q ss_pred --------C----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008251 480 --------R----------------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (572)
Q Consensus 480 --------~----------------~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~ 530 (572)
+ ++.-+-.+..-|...|-|++-+..++.+|-++..+-..-.+|+.+..+.+
T Consensus 1253 K~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred HHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC
Confidence 0 12233345556777888999999999999988877777777776655543
No 381
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=73.41 E-value=61 Score=31.54 Aligned_cols=106 Identities=15% Similarity=0.062 Sum_probs=77.1
Q ss_pred HcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhc-CCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008251 411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTKVLDLDSRNVKALYRRA 489 (572)
Q Consensus 411 ~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~-~~~~~Ai~~~~~al~~~p~~~ka~~~~g 489 (572)
+...-.+|++.-..++.++|.+...+ ..+-.|...+ .+..+-+++.+.+++-+|.|-..|..|-
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW---------------~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr 119 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVW---------------QYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRR 119 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHH---------------HHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHH
Confidence 34456789999999999988776552 2333333332 3567778888999999999999999888
Q ss_pred HHHHhcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008251 490 QAYIQMADLD-LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (572)
Q Consensus 490 ~a~~~l~~~~-~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~ 531 (572)
.....++++. .-++..+.++..+..|--+.+...=+-+....
T Consensus 120 ~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~ 162 (318)
T KOG0530|consen 120 VIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKD 162 (318)
T ss_pred HHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhh
Confidence 8888888887 77888899998888876666655544443333
No 382
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=73.22 E-value=37 Score=29.41 Aligned_cols=61 Identities=20% Similarity=0.119 Sum_probs=39.1
Q ss_pred HhhHHHHHHhcCCHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008251 451 NLNNAACKLKLKDYKQAEK-LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~-~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 511 (572)
|.++|.-++-...-...++ .++.....+..++..++.+|.||.++|+..+|-+.+++|-+.
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 5566666554444344443 334444456678999999999999999999999999988753
No 383
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=71.65 E-value=38 Score=34.01 Aligned_cols=75 Identities=12% Similarity=0.066 Sum_probs=57.7
Q ss_pred HhhHHHHHHhcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 451 NLNNAACKLKLKDYKQAEKLCTKVLDL--DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~--~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
-+|+|.+..+..-...++...+..... -...--++--+|..+.++|+.++|...|++|+.+.++..+......++
T Consensus 332 ~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 332 TLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred eehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 469999988888888888877666553 123334555789999999999999999999999999887665555544
No 384
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=71.50 E-value=1.9e+02 Score=33.08 Aligned_cols=105 Identities=17% Similarity=0.047 Sum_probs=77.0
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008251 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (572)
Q Consensus 402 ~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (572)
..-.+=.+.-..+|.+|-....++...++...... ...+.....--.|.+....++++.|++.++.++..-|.+
T Consensus 418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~------~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~ 491 (894)
T COG2909 418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSR------QGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA 491 (894)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccc------hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc
Confidence 34455556667888888888888777665432111 112223333356777777899999999999999987765
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008251 482 -----VKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (572)
Q Consensus 482 -----~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 512 (572)
.-++...|.+..-.|++++|+...+.+.++.
T Consensus 492 ~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 492 AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999998874
No 385
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=71.38 E-value=56 Score=34.00 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=44.4
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHH--hcCCHHHHHHHHHHHH
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL--KLKDYKQAEKLCTKVL 475 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~--k~~~~~~Ai~~~~~al 475 (572)
.+.....++..+|++++|..|.+.+...+..++.... ...+.+++.+|. -.-+|.+|.+.+++.+
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-------------~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE-------------YQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4567788889999999999999999998865332111 122334544444 3556777777777665
Q ss_pred h
Q 008251 476 D 476 (572)
Q Consensus 476 ~ 476 (572)
.
T Consensus 197 ~ 197 (379)
T PF09670_consen 197 K 197 (379)
T ss_pred H
Confidence 4
No 386
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=71.37 E-value=16 Score=36.09 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=30.9
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhc
Q 008251 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (572)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (572)
-+..|..+..++...-+.++|.+|+..|..|++++-.
T Consensus 6 ~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~ 42 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLH 42 (439)
T ss_pred HHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHH
Confidence 4566777788888888999999999999999997654
No 387
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=70.16 E-value=11 Score=24.34 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=23.8
Q ss_pred HhhHHHHHHhcCCHHHHHHH--HHHHHhcCCCC
Q 008251 451 NLNNAACKLKLKDYKQAEKL--CTKVLDLDSRN 481 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~--~~~al~~~p~~ 481 (572)
+.-+|.++...++|++|++. +.-+..+++.|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 45678999999999999999 44777777754
No 388
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.04 E-value=6.8 Score=26.69 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=24.5
Q ss_pred HhhHHHHHHhcCCHHHHHHHHHHHHhc
Q 008251 451 NLNNAACKLKLKDYKQAEKLCTKVLDL 477 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (572)
.+++|..|+.+|+++.|...++.++..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 368999999999999999999999953
No 389
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=69.91 E-value=49 Score=39.18 Aligned_cols=109 Identities=17% Similarity=0.095 Sum_probs=80.1
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHh
Q 008251 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (572)
Q Consensus 397 ~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (572)
+.+..++..+..+++.+++++|+..-.+|+-+..........+ ....|.|++...+..++-..|+..+.+++.
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~-------t~~~y~nlal~~f~~~~~~~al~~~~ra~~ 1043 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN-------TKLAYGNLALYEFAVKNLSGALKSLNRALK 1043 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH-------HHHHhhHHHHHHHhccCccchhhhHHHHHH
Confidence 3456778888889999999999998888776554433322211 223377888888888888889998888876
Q ss_pred cC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008251 477 LD--------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (572)
Q Consensus 477 ~~--------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 512 (572)
+. |.-.-...+.+..+..+++++.|+.+++.|+.++
T Consensus 1044 l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1044 LKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred hhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 42 3334455678888888999999999999998854
No 390
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=69.34 E-value=1.4e+02 Score=32.95 Aligned_cols=114 Identities=15% Similarity=0.118 Sum_probs=85.6
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008251 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (572)
Q Consensus 402 ~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (572)
+..-|..|-..|+.+.|...|++|++..-.. -..+..++++-|..-++..+++.|+...+.|.-. |.+
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~-----------v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~ 457 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKT-----------VEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTN 457 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccc-----------hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCc
Confidence 4566777788889999999999988652211 1235667899999999999999999999888764 333
Q ss_pred -------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008251 482 -------------------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (572)
Q Consensus 482 -------------------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~ 527 (572)
.+.|-..+.....+|-++.....|.+.+.|.--.+.+.-+++...+
T Consensus 458 ~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE 522 (835)
T KOG2047|consen 458 PELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE 522 (835)
T ss_pred hhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3555566677777888888899999999988777777777765543
No 391
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=68.58 E-value=15 Score=35.39 Aligned_cols=124 Identities=18% Similarity=0.131 Sum_probs=74.5
Q ss_pred HHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----
Q 008251 407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN----- 481 (572)
Q Consensus 407 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~----- 481 (572)
..++..++--.|+..|...+.-.+.+..+-.+...- ...+|+-...|+. .-....|.+++++||-.....
T Consensus 3 ~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~----lEk~~~~Fs~~~s-~~~~~n~~e~~d~ALm~Ae~r~D~~~ 77 (368)
T COG5091 3 KALYDEKEPLKALHLYDEILKGSPTNLTALIFKAAC----LEKLYFGFSDWHS-DATMENAKELLDKALMTAEGRGDRSK 77 (368)
T ss_pred cchhcccchHHHhhhhhhhhccCCcceeEEeehhhh----HHHHHhhhhhhhc-ccChhhHHHHHHHHHHhhhccCCcce
Confidence 345666666778888877766555443221100000 1122344445543 234567888888888654321
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008251 482 -VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (572)
Q Consensus 482 -~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~ 536 (572)
.-+.+|++.+|+.+.+|+-|..+|..|+.+--++. .-....++..++...++++
T Consensus 78 IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~-L~~We~rLet~L~~~~kkQ 132 (368)
T COG5091 78 IGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDT-LPLWEDRLETKLNKKNKKQ 132 (368)
T ss_pred eeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHhHhhHhh
Confidence 24678999999999999999999999999854442 3333444555554444443
No 392
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.52 E-value=44 Score=35.73 Aligned_cols=65 Identities=25% Similarity=0.165 Sum_probs=54.9
Q ss_pred HhhHHHHHHhcCCHHHHHHHHHHHHhcC---CC----CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCC
Q 008251 451 NLNNAACKLKLKDYKQAEKLCTKVLDLD---SR----NVKALYRRAQAYIQMAD-LDLAEFDIKKALEIDPDN 515 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~---p~----~~ka~~~~g~a~~~l~~-~~~A~~~~~~al~l~P~~ 515 (572)
++-+|.|+..+++-..|..++..+++.. .+ -+-|+|.+|..|..++. ..+|.+++.+|.....++
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 5678999999999999999999887431 11 37899999999999999 999999999999877554
No 393
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=67.26 E-value=1.4e+02 Score=31.46 Aligned_cols=107 Identities=17% Similarity=0.197 Sum_probs=66.7
Q ss_pred hHHHHHHHHHcCcHH----HHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhc
Q 008251 402 KKEQGNTLFKAGKYA----RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (572)
Q Consensus 402 ~k~~G~~~~~~g~~~----~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~ 477 (572)
.++.+..-.+.++.. .-+.+|++.++.+. ++....++.++..+..+-.+.+. .+-..|++.|..||+.
T Consensus 270 mkEW~~ae~qaKnPKAekqalnqhFQ~~v~sLE-------ee~a~erqqlvetH~~RV~AmlN-drrR~Ale~ylaALqa 341 (615)
T KOG3540|consen 270 MKEWEEAETQAKNPKAEKQALNQHFQKTVSSLE-------EEAARERQQLVETHEARVEAMLN-DRRRDALENYLAALQA 341 (615)
T ss_pred HHHHHHHHhcccCchhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhc
Confidence 444444444555532 22345555554433 33344444555556566555543 3457899999999999
Q ss_pred CCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCH
Q 008251 478 DSRNVKALYRRAQAYIQMA--DLDLAEFDIKKALEIDPDNR 516 (572)
Q Consensus 478 ~p~~~ka~~~~g~a~~~l~--~~~~A~~~~~~al~l~P~~~ 516 (572)
+|..+.-.+..-+.|.+.. +-..-+..|+.++..||...
T Consensus 342 ~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkkA 382 (615)
T KOG3540|consen 342 DPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKKA 382 (615)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 9998866666555565543 34467789999999999864
No 394
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=66.97 E-value=1.3e+02 Score=31.25 Aligned_cols=74 Identities=16% Similarity=0.070 Sum_probs=58.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008251 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD--LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (572)
Q Consensus 459 ~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~--~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~ 532 (572)
.++.-++.-+.+...+|+.+|+.--+|+.|..++.+... +..-++.+.++|+.||.|-.+....+-+....+..
T Consensus 86 ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 86 EKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred HHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 344467778888889999999999999999999987664 68888999999999999977777666654444333
No 395
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.14 E-value=31 Score=31.94 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008251 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (572)
Q Consensus 463 ~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 515 (572)
.-...++...+.+...| ++..+.+++.++..+|+.++|..+..++..+-|.+
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 34556666777787777 78899999999999999999999999999999944
No 396
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.97 E-value=19 Score=34.97 Aligned_cols=51 Identities=24% Similarity=0.232 Sum_probs=44.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008251 460 KLKDYKQAEKLCTKVLDLDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALE 510 (572)
Q Consensus 460 k~~~~~~Ai~~~~~al~~~p~~----~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 510 (572)
+..+.++|+..+.+++++.+.. .||+-.+-+.++++++|.+-+..|++.|.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 5568999999999999999864 58999999999999999998888877664
No 397
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=65.73 E-value=79 Score=26.39 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=51.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 008251 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNV---KALYRRAQAYIQMAD-----------LDLAEFDIKKALEIDPDNRDVK 519 (572)
Q Consensus 454 la~~~~k~~~~~~Ai~~~~~al~~~p~~~---ka~~~~g~a~~~l~~-----------~~~A~~~~~~al~l~P~~~~~~ 519 (572)
+|.-++..|++-+|++..+..+...+++. -.+...|..+.++.. +-.|+++|.++..+.|.. +.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~--A~ 79 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS--AH 79 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH--HH
Confidence 57778899999999999999998887665 344556777665543 347899999999999998 44
Q ss_pred HHHH
Q 008251 520 LEYK 523 (572)
Q Consensus 520 ~~l~ 523 (572)
.++.
T Consensus 80 ~L~~ 83 (111)
T PF04781_consen 80 SLFE 83 (111)
T ss_pred HHHH
Confidence 4443
No 398
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=64.94 E-value=37 Score=35.67 Aligned_cols=90 Identities=17% Similarity=0.059 Sum_probs=47.9
Q ss_pred HHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 008251 407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALY 486 (572)
Q Consensus 407 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~ 486 (572)
...+..|+...|-+....+++-.+.++.. ...++..+..+|.|+.|.....-+-..-....++.-
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~---------------i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~ 361 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVL---------------IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLR 361 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchh---------------hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHH
Confidence 34556677777777777777665555432 223455555566666665555444333333344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh
Q 008251 487 RRAQAYIQMADLDLAEFDIKKALEI 511 (572)
Q Consensus 487 ~~g~a~~~l~~~~~A~~~~~~al~l 511 (572)
-+-+...+++++++|.......|.-
T Consensus 362 ~~~r~~~~l~r~~~a~s~a~~~l~~ 386 (831)
T PRK15180 362 CRLRSLHGLARWREALSTAEMMLSN 386 (831)
T ss_pred HHHHhhhchhhHHHHHHHHHHHhcc
Confidence 4444455555555555554444433
No 399
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=64.57 E-value=32 Score=40.61 Aligned_cols=107 Identities=15% Similarity=0.075 Sum_probs=84.3
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHh
Q 008251 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (572)
Q Consensus 397 ~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (572)
..+....+.|......+.+..|.+ ..+++.+...-. ..++.....+|..+|..+.+++++++|+.++.++.-
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~-------~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVM-------GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACI 1001 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhh-------hhcchhHHHHHHHHHHHHhhhcchHHHHHhccccee
Confidence 456777888888888888888888 667776655322 123344567788999999999999999999998754
Q ss_pred cC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008251 477 LD--------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (572)
Q Consensus 477 ~~--------p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 511 (572)
+. |+...+|-+++...+..++...|...+.+++.+
T Consensus 1002 i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1002 ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 42 455788999999999999999999999999876
No 400
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=64.42 E-value=26 Score=26.82 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhCCCC
Q 008251 499 DLAEFDIKKALEIDPDN 515 (572)
Q Consensus 499 ~~A~~~~~~al~l~P~~ 515 (572)
.+|++.|.++++.+|+.
T Consensus 32 ~~a~e~l~~~~~~~~~~ 48 (77)
T smart00745 32 KKAIEYLLEGIKVESDS 48 (77)
T ss_pred HHHHHHHHHHhccCCCH
Confidence 34444555566666654
No 401
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=63.29 E-value=72 Score=32.17 Aligned_cols=117 Identities=22% Similarity=0.173 Sum_probs=77.6
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (572)
..-.+.|..+...++|.-|...|-+|.+-....... .+....++ |.-|+-..+.+-+--.++-....+++++.
T Consensus 210 ~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~----v~A~~sLK---YMlLcKIMln~~ddv~~lls~K~~l~y~g 282 (411)
T KOG1463|consen 210 TLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDD----VKALTSLK---YMLLCKIMLNLPDDVAALLSAKLALKYAG 282 (411)
T ss_pred HHHHhccceeecccccchHHHHHHHHHccccccCCc----HHHHHHHH---HHHHHHHHhcCHHHHHHHHhhHHHHhccC
Confidence 334456666667788999999988888754432221 12222232 44444444444444556667778899888
Q ss_pred CCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008251 480 RNVKALYRRAQAYIQ--MADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (572)
Q Consensus 480 ~~~ka~~~~g~a~~~--l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~ 526 (572)
....|+--.|.++.+ +.+|+.|+.+|+.-|.-|| -++.++..+.
T Consensus 283 ~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~Ly 328 (411)
T KOG1463|consen 283 RDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSLY 328 (411)
T ss_pred cchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHHH
Confidence 899999999999876 5789999999998886654 4555555543
No 402
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=63.28 E-value=45 Score=32.43 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=67.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008251 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539 (572)
Q Consensus 461 ~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~-~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~~~ 539 (572)
.+.=.+|+.....+|.++|.|-..|..|-.++..++ +..+-++++...++-+|.|-.+.-..+.+-..+....-.|-..
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef 135 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEF 135 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHH
Confidence 344577888889999999999888877777777654 6788889999999999999999988888877776444466667
Q ss_pred HHhhhhc
Q 008251 540 YGNMFAK 546 (572)
Q Consensus 540 ~~~~f~~ 546 (572)
.++|+..
T Consensus 136 ~~~~l~~ 142 (318)
T KOG0530|consen 136 TKLMLDD 142 (318)
T ss_pred HHHHHhc
Confidence 7777753
No 403
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=62.66 E-value=28 Score=26.96 Aligned_cols=19 Identities=11% Similarity=-0.067 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhCCCCHH
Q 008251 499 DLAEFDIKKALEIDPDNRD 517 (572)
Q Consensus 499 ~~A~~~~~~al~l~P~~~~ 517 (572)
.+|++.|..+++..|+...
T Consensus 30 ~~aie~l~~~lk~e~d~~~ 48 (77)
T cd02683 30 QEGIDLLMQVLKGTKDEAK 48 (77)
T ss_pred HHHHHHHHHHHhhCCCHHH
Confidence 3444556666667776543
No 404
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=62.58 E-value=27 Score=32.46 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008251 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (572)
Q Consensus 481 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 514 (572)
.+...+.+|.-|. ..+.++|+..|.++|++.+.
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~ 172 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNP 172 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC
Confidence 4555555555444 44556666666666655433
No 405
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=61.46 E-value=62 Score=33.47 Aligned_cols=99 Identities=19% Similarity=0.022 Sum_probs=70.6
Q ss_pred CcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcC--CHHHHHHHHHHHHhcCCCCHHHHH-HHH
Q 008251 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQAEKLCTKVLDLDSRNVKALY-RRA 489 (572)
Q Consensus 413 g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~--~~~~Ai~~~~~al~~~p~~~ka~~-~~g 489 (572)
.-++.-+..-..|++.+|....+ ++-+.-+..+.. +|..=+..|+++|+.||.|-.+|. ||-
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~a---------------W~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRf 153 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYGA---------------WHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRF 153 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHHH---------------HHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHH
Confidence 34566666677777777765543 556777776654 589999999999999999887774 555
Q ss_pred HHHHhcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008251 490 QAYIQMAD---LDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (572)
Q Consensus 490 ~a~~~l~~---~~~A~~~~~~al~l~P~~~~~~~~l~~l~ 526 (572)
.+-..... ..+-++...+++.-++.|-.+......+.
T Consensus 154 V~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL 193 (421)
T KOG0529|consen 154 VVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLL 193 (421)
T ss_pred HHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHH
Confidence 54444444 67778888999988999876666555443
No 406
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=61.43 E-value=32 Score=36.54 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHH
Q 008251 401 KKKEQGNTLFKAGKYARASKRYEKA 425 (572)
Q Consensus 401 ~~k~~G~~~~~~g~~~~A~~~y~~a 425 (572)
.++..|..++++|+++.|..+|+++
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 4445555555555555555555543
No 407
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=60.34 E-value=69 Score=23.89 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=9.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 008251 454 NAACKLKLKDYKQAEKLCTKV 474 (572)
Q Consensus 454 la~~~~k~~~~~~Ai~~~~~a 474 (572)
.|.-+-+.|+|.+|+.+|..+
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~a 31 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEA 31 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 333333445555555544333
No 408
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=60.26 E-value=64 Score=32.68 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008251 469 KLCTKVLDLDSRNVKALYRRAQAYIQMAD------------LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (572)
Q Consensus 469 ~~~~~al~~~p~~~ka~~~~g~a~~~l~~------------~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~ 536 (572)
..+++.++-+|+++.+|..+..---.+-. .+..+..|++||+.+|++......+-++-.++.. ..+-
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~-~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWD-SEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHH
Confidence 45788899999999999988876555533 4677889999999999996655555444333321 1222
Q ss_pred HHHHHhhhhc
Q 008251 537 AKFYGNMFAK 546 (572)
Q Consensus 537 ~~~~~~~f~~ 546 (572)
.+.++++..+
T Consensus 85 ~~~we~~l~~ 94 (321)
T PF08424_consen 85 AKKWEELLFK 94 (321)
T ss_pred HHHHHHHHHH
Confidence 3444555444
No 409
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=59.42 E-value=32 Score=29.18 Aligned_cols=64 Identities=19% Similarity=0.085 Sum_probs=50.5
Q ss_pred HhhHHHHHHhcCCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHh
Q 008251 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSR---------------NVKALYRRAQAYIQMADLDLAEFDIKKA----LEI 511 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~---------------~~ka~~~~g~a~~~l~~~~~A~~~~~~a----l~l 511 (572)
+.++|.-.++.+++-.++-+|++|+.+..+ .+-...|+|.-+..+|+-+-.+++++-| +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 568899999999999999999999875321 1234568999999999999999999655 456
Q ss_pred CCC
Q 008251 512 DPD 514 (572)
Q Consensus 512 ~P~ 514 (572)
-|.
T Consensus 84 iPQ 86 (140)
T PF10952_consen 84 IPQ 86 (140)
T ss_pred ccC
Confidence 666
No 410
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=59.38 E-value=86 Score=33.04 Aligned_cols=103 Identities=13% Similarity=0.013 Sum_probs=67.4
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCC--------------HH
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD--------------YK 465 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~--------------~~ 465 (572)
.+.+..|..+|-.++|+.|...|..+.+-...+... .....++-..|.|.+..+. ++
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw---------~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le 279 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAW---------KYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLE 279 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhH---------HHHHhHHHHHHHHHHhcCCCCccccccccHHHHHH
Confidence 356788999999999999999999988755443321 2334444455666665552 33
Q ss_pred HHHHHHHHH----HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008251 466 QAEKLCTKV----LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (572)
Q Consensus 466 ~Ai~~~~~a----l~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 511 (572)
.|...|.++ ...-....++.+..+.++..++.+.+|...+-++...
T Consensus 280 ~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 280 NAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 444444442 1111234567778888888899988888877777655
No 411
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=58.55 E-value=30 Score=20.68 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008251 496 ADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (572)
Q Consensus 496 ~~~~~A~~~~~~al~l~P~~~~~~~~l~ 523 (572)
++++.|...|++++...|.+..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 3456666677777776666655554443
No 412
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=58.30 E-value=1.2e+02 Score=39.98 Aligned_cols=90 Identities=11% Similarity=-0.070 Sum_probs=68.0
Q ss_pred HHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHHhCCCCH
Q 008251 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM----AD----LDLAEFDIKKALEIDPDNR 516 (572)
Q Consensus 445 ~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l----~~----~~~A~~~~~~al~l~P~~~ 516 (572)
...+..+.-.|..+.+++++++|-..+..|++++..-.|||+..|.-+.+. .. -..|+.+|-+|....-+.
T Consensus 2809 ~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~s- 2887 (3550)
T KOG0889|consen 2809 RQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSS- 2887 (3550)
T ss_pred HHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccch-
Confidence 345556777899999999999999999999999999999999999876543 11 246778777777766333
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008251 517 DVKLEYKTLKEKMKEYNKK 535 (572)
Q Consensus 517 ~~~~~l~~l~~~~~~~~~~ 535 (572)
.++..+.++...+.-.+..
T Consensus 2888 kaRk~iakvLwLls~dda~ 2906 (3550)
T KOG0889|consen 2888 KARKLIAKVLWLLSFDDSL 2906 (3550)
T ss_pred hhHHHHHHHHHHHHhcccc
Confidence 3788888887766544443
No 413
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=58.16 E-value=34 Score=32.93 Aligned_cols=55 Identities=20% Similarity=0.302 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHh-cCCHHHHHHHHHHHHh
Q 008251 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLD 476 (572)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k-~~~~~~Ai~~~~~al~ 476 (572)
-+.|...|++|+.+.......+ ..++..+.+|.+..|+. +++.++|+..+++|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~-------~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPT-------HPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT-------SHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCC-------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3679999999999877633222 36777788899888765 7899999998888764
No 414
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=57.55 E-value=32 Score=33.86 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008251 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (572)
Q Consensus 482 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~ 531 (572)
.+.+...+..|+..|.+.+|+...+++++++|=+......+.++...++.
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence 36677889999999999999999999999999998888888777666654
No 415
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.26 E-value=1.1e+02 Score=30.16 Aligned_cols=64 Identities=17% Similarity=0.143 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHH
Q 008251 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (572)
Q Consensus 403 k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~ 473 (572)
.+.+|.+.+.+++.+|+..|.+.+.. ..+.++ +....+....++++..|...|+|..--+....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~k-----g~s~de--k~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~ 70 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGK-----GVSKDE--KTLNEQEATVLELFKLYVSKGDYCSLGDTITS 70 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcC-----CCChhh--hhhhHHHHHHHHHHHHHHhcCCcchHHHHHHh
Confidence 46788999999999999999998864 111111 11122333467999999999988765544433
No 416
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.73 E-value=1.3e+02 Score=32.95 Aligned_cols=28 Identities=25% Similarity=0.327 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHH
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVK 427 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~ 427 (572)
.++++.|.....++++..|.++|.+|-+
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3456666666666666666666666654
No 417
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.25 E-value=1.6e+02 Score=26.89 Aligned_cols=98 Identities=12% Similarity=0.023 Sum_probs=64.7
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHH-HhcCCC
Q 008251 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV-LDLDSR 480 (572)
Q Consensus 402 ~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~a-l~~~p~ 480 (572)
....|..+..+|+-..|+..|..+-.-.+... ..+..+.+.-|..+.-.+.|+....-.+.. -.-+|-
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~dt~~P~-----------~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~m 165 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAADTSIPQ-----------IGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPM 165 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhccCCCcc-----------hhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChh
Confidence 44567778888999999999988765332211 112333455566667778888776655432 222333
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008251 481 NVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (572)
Q Consensus 481 ~~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 510 (572)
...|---+|.+-.+.|+|..|..+|.+...
T Consensus 166 R~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 166 RHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 345555678888899999999999998775
No 418
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=55.44 E-value=1.9e+02 Score=28.52 Aligned_cols=110 Identities=12% Similarity=0.119 Sum_probs=74.8
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC--H
Q 008251 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN--V 482 (572)
Q Consensus 405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~--~ 482 (572)
.+..++=..||..|+...+++++.+..+.... +......+++..+..---++...+++|.+++.+.-+-.+. |.+ +
T Consensus 41 Aad~LvV~rdF~aal~tCerglqsL~~~a~~e-e~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~-pEklPp 118 (309)
T PF07163_consen 41 AADLLVVHRDFQAALETCERGLQSLASDADAE-EPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV-PEKLPP 118 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccc-ccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC-cccCCH
Confidence 34566778999999999999999886543221 1112233444444444456777899999999998776664 433 6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008251 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (572)
Q Consensus 483 ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~ 517 (572)
|.+----..|.+++++....+.-. +.-.+|+|..
T Consensus 119 kIleLCILLysKv~Ep~amlev~~-~WL~~p~Nq~ 152 (309)
T PF07163_consen 119 KILELCILLYSKVQEPAAMLEVAS-AWLQDPSNQS 152 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHH-HHHhCcccCC
Confidence 777777778999999877666554 4445788864
No 419
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=55.02 E-value=1.1e+02 Score=32.29 Aligned_cols=100 Identities=16% Similarity=0.009 Sum_probs=70.8
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008251 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (572)
Q Consensus 402 ~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (572)
+-.+|-.+-+++++++|-..|.+..+-....+.. ++..++.++-.-.+-+++.+.-.......-+..|..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~----------lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s 78 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFL----------LKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKS 78 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHH----------HHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCc
Confidence 4568899999999999999999988755443322 222345555444455555555555555555567888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008251 482 VKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (572)
Q Consensus 482 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 511 (572)
+...+-.|...++.++|.+|++.+..-...
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~ 108 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQ 108 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 888888999999999999999988655443
No 420
>PF15469 Sec5: Exocyst complex component Sec5
Probab=54.76 E-value=56 Score=29.88 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=20.6
Q ss_pred HHHHcCcHHHHHHHHHHHHHHhhcc
Q 008251 408 TLFKAGKYARASKRYEKAVKYIEYD 432 (572)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~ 432 (572)
.+.++|+|+.|++.|.+|..+....
T Consensus 95 ~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 95 ECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 3457899999999999999887653
No 421
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=54.61 E-value=1.8e+02 Score=31.25 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=42.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--------------------cCCHHHHHHHHHHHHHhCCCC
Q 008251 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ--------------------MADLDLAEFDIKKALEIDPDN 515 (572)
Q Consensus 461 ~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~--------------------l~~~~~A~~~~~~al~l~P~~ 515 (572)
..+|.+|++...-.|++|..+.+|.-++-.-+.. -.+|.+|+.+|++.+..+..|
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 5689999999999999999988887665554444 456778888888888777555
No 422
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=54.14 E-value=2.7e+02 Score=28.88 Aligned_cols=50 Identities=14% Similarity=-0.001 Sum_probs=34.0
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008251 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (572)
Q Consensus 460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al 509 (572)
++|.++.|++|...+-+.-|.-+.|+.-.-...+..|+++.|++.++...
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 45677777777777777777766666666666667777777776665544
No 423
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=54.14 E-value=29 Score=22.13 Aligned_cols=30 Identities=27% Similarity=0.134 Sum_probs=18.7
Q ss_pred HHHHHHHH--HHHHhcC-----CHHHHHHHHHHHHHh
Q 008251 482 VKALYRRA--QAYIQMA-----DLDLAEFDIKKALEI 511 (572)
Q Consensus 482 ~ka~~~~g--~a~~~l~-----~~~~A~~~~~~al~l 511 (572)
+.|.|++| .+|..-. ++++|..+|++|.+.
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 35677777 4444332 467788888777654
No 424
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=54.11 E-value=1.8e+02 Score=26.88 Aligned_cols=91 Identities=13% Similarity=0.165 Sum_probs=57.0
Q ss_pred HHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHH
Q 008251 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM--ADLDLAEFDIKKALEIDPDNRDV 518 (572)
Q Consensus 441 ~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l--~~~~~A~~~~~~al~l~P~~~~~ 518 (572)
...+.-+...+..+..+.+. .+-..|+..|..||..+|.|+.-.++.-..|.+. .+-.-.+..|+.+...+|.. +
T Consensus 91 ~~er~qL~~~H~qRV~a~Ln-erkr~al~~y~~al~~~ppn~~~vl~~Lk~yiRa~~KDR~Htl~h~~H~~~~dp~~--A 167 (193)
T PF12925_consen 91 AAERQQLVETHQQRVQAMLN-ERKRAALENYTAALQADPPNPHKVLKALKKYIRAEEKDRQHTLRHFEHLRMVDPEE--A 167 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--H
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHH--H
Confidence 33344455556666666654 3458899999999999999887777665555543 34456788999999999976 4
Q ss_pred HHHHHHHHHHHHHHHH
Q 008251 519 KLEYKTLKEKMKEYNK 534 (572)
Q Consensus 519 ~~~l~~l~~~~~~~~~ 534 (572)
......+...++..+.
T Consensus 168 ~~~k~~vl~hL~~Id~ 183 (193)
T PF12925_consen 168 AQIKPQVLTHLRVIDE 183 (193)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 4444444444444433
No 425
>PF12854 PPR_1: PPR repeat
Probab=54.04 E-value=34 Score=21.57 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008251 481 NVKALYRRAQAYIQMADLDLAEFDIKK 507 (572)
Q Consensus 481 ~~ka~~~~g~a~~~l~~~~~A~~~~~~ 507 (572)
|.-.|.-+-.+|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 556677788888888888888888764
No 426
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=53.67 E-value=89 Score=34.79 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008251 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA 508 (572)
Q Consensus 461 ~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~a 508 (572)
.++|.+|+...+..-. .....+.|=..+.-|..+|+|+-|.+.|.++
T Consensus 745 akew~kai~ildniqd-qk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQD-QKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred hhhhhhhHhHHHHhhh-hccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 3456666655443221 1222344446777788888888888777554
No 427
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=53.59 E-value=27 Score=36.66 Aligned_cols=92 Identities=16% Similarity=0.123 Sum_probs=63.3
Q ss_pred HHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 008251 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR 488 (572)
Q Consensus 409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~ 488 (572)
+-..|+|+.|......+-..+...... .--+-..+.++++|+.|.....-.|...-..+..+--.
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~---------------~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~ia 397 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDST---------------LRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVA 397 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchH---------------HHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeee
Confidence 334566777766666555444332211 11233345678899999998888887766777776666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008251 489 AQAYIQMADLDLAEFDIKKALEIDPDN 515 (572)
Q Consensus 489 g~a~~~l~~~~~A~~~~~~al~l~P~~ 515 (572)
|....+++-+++|.-..++.+.++|..
T Consensus 398 a~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 398 AGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred cccHHHHhHHHHHHHHHHHHhccCChh
Confidence 777778888999999999999988764
No 428
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=52.82 E-value=75 Score=33.30 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=74.4
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhccC----------C--CChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHH
Q 008251 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDT----------S--FGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK 469 (572)
Q Consensus 402 ~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~----------~--~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~ 469 (572)
....|...|..+++..|+..+.+||+...... + ....+......-...++..++-- .=+...++.
T Consensus 34 ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~---~le~a~Cl~ 110 (471)
T KOG4459|consen 34 AYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGH---LLERAACLR 110 (471)
T ss_pred HHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHH---HHHHHHHHH
Confidence 45677888888888888888888887532110 0 00000000000000001111111 112344556
Q ss_pred HHHHHHhcCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008251 470 LCTKVLDLDSRN----------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (572)
Q Consensus 470 ~~~~al~~~p~~----------~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~ 526 (572)
.|...+...+.. -..|-++=.||.+.|++.+|++.-...+--+|++.+++..+..-+
T Consensus 111 rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq 177 (471)
T KOG4459|consen 111 RCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQ 177 (471)
T ss_pred HHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHH
Confidence 676666555433 256778889999999999999999999999999999888877654
No 429
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=52.75 E-value=2e+02 Score=29.77 Aligned_cols=63 Identities=11% Similarity=0.038 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHh--cCCHHHHHHHHH
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--LKDYKQAEKLCT 472 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k--~~~~~~Ai~~~~ 472 (572)
.....++..+|++.+|..|.+.|..++...... +... ....+.+++.||.. .=+|++|...++
T Consensus 131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~-----~~~~-----~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 131 NTEQGYARRAINAFDYLFAHARLETLLRRLLSA-----VNHT-----FYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhcccCh-----hhhh-----HHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 344556779999999999999999998753321 1111 12234455555544 556777777776
No 430
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=52.69 E-value=41 Score=25.67 Aligned_cols=16 Identities=19% Similarity=0.081 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhCCC
Q 008251 499 DLAEFDIKKALEIDPD 514 (572)
Q Consensus 499 ~~A~~~~~~al~l~P~ 514 (572)
..|++.|..+++.+|+
T Consensus 30 ~~a~e~l~~~~~~~~~ 45 (75)
T cd02656 30 KEALDYLLQALKAEKE 45 (75)
T ss_pred HHHHHHHHHHhccCCC
Confidence 3344445555555655
No 431
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=52.08 E-value=31 Score=21.42 Aligned_cols=29 Identities=38% Similarity=0.293 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhc----CCHHHHHHHHHHHHHh
Q 008251 483 KALYRRAQAYIQM----ADLDLAEFDIKKALEI 511 (572)
Q Consensus 483 ka~~~~g~a~~~l----~~~~~A~~~~~~al~l 511 (572)
.+.+++|.+|..- .+..+|..+|++|.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 4566666666542 3667777777766543
No 432
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=51.85 E-value=52 Score=36.32 Aligned_cols=49 Identities=18% Similarity=0.161 Sum_probs=25.1
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008251 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI 505 (572)
Q Consensus 453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~ 505 (572)
|.+.|++.+++|.+-... ...-|++.+.+=.+|.++...|.-++|.+.|
T Consensus 827 ~~~ecly~le~f~~LE~l----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVL----ARTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred hHHHHHHHHHhhhhHHHH----HHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 555566666655543222 1223555555555555555555555555444
No 433
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=51.30 E-value=40 Score=20.62 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 008251 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQ 494 (572)
Q Consensus 467 Ai~~~~~al~~~p~~~ka~~~~g~a~~~ 494 (572)
.+..+..++..+|.|-.+|..|--++.+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 4567777888888888887766665544
No 434
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=51.15 E-value=1e+02 Score=36.01 Aligned_cols=66 Identities=21% Similarity=0.171 Sum_probs=51.1
Q ss_pred HhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008251 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK-------ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~k-------a~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~ 518 (572)
|+-.|.+|.++++|++-++++..|++..|+++. .-||+-.+..... ..|....--++...|.+...
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHR--REALVFMLLALWIAPEKISS 627 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCcccccc
Confidence 778899999999999999999999999999864 4455555554433 45667777788888987543
No 435
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.90 E-value=1.2e+02 Score=29.72 Aligned_cols=144 Identities=16% Similarity=0.216 Sum_probs=79.8
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC--
Q 008251 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN-- 481 (572)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~-- 481 (572)
..|+.+|..++|..-....++.-..+..... ++..++-.+ +..+|.---+.|-.+++-.+-...|.++|.....-
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edG--edD~kKGtQ-LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDG--EDDQKKGTQ-LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccC--chhhhccch-hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 5678888888887655555544333332221 111111111 22334444556666677666667778888765432
Q ss_pred HHHH--HH--HHHHHHhcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 008251 482 VKAL--YR--RAQAYIQMADLDLAEFDIKKALEIDP-----DNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMSMFGS 552 (572)
Q Consensus 482 ~ka~--~~--~g~a~~~l~~~~~A~~~~~~al~l~P-----~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~ 552 (572)
+-.+ .| =|+.|++-|+|++|..+|-.|++--. .-..+...|- ..+|.-+ .....
T Consensus 227 PlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLV----------------LANMLmk-S~iNP 289 (440)
T KOG1464|consen 227 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLV----------------LANMLMK-SGINP 289 (440)
T ss_pred hHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHH----------------HHHHHHH-cCCCC
Confidence 2221 11 25678899999999999999887532 2222222222 1223322 45666
Q ss_pred CccCCCCCCCCCCCC
Q 008251 553 AESNKAEPKEAEPMS 567 (572)
Q Consensus 553 ~~~~~~~k~~~e~~~ 567 (572)
..++++++.+.++++
T Consensus 290 FDsQEAKPyKNdPEI 304 (440)
T KOG1464|consen 290 FDSQEAKPYKNDPEI 304 (440)
T ss_pred CcccccCCCCCCHHH
Confidence 677777777777654
No 436
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=48.21 E-value=65 Score=25.03 Aligned_cols=57 Identities=19% Similarity=0.417 Sum_probs=40.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 008251 491 AYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMSMFG 551 (572)
Q Consensus 491 a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~~~ 551 (572)
.+.++...+=|+.++.-.|...|++..+...++....++++.. +.|.+.|.-+.-.+
T Consensus 4 LL~~I~~~~Fa~~dl~LyLDTHP~d~~Al~~y~~~~~~~~~l~----~~Ye~~yGPLt~~~ 60 (78)
T PF12652_consen 4 LLREIQEVSFAVVDLNLYLDTHPDDQEALEYYNEYSKQRKQLK----KEYEKRYGPLTNFG 60 (78)
T ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH----HHHHHHhCCCcCCC
Confidence 4555666777889999999999999999999888766655444 45555665554433
No 437
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=47.85 E-value=2.1e+02 Score=29.70 Aligned_cols=113 Identities=12% Similarity=0.096 Sum_probs=73.0
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHh
Q 008251 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (572)
Q Consensus 397 ~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (572)
+.|..+.-.|....-+.+|..|.+++..|++..|...... .+..+...+....+-+|++.+-.-.|+..++
T Consensus 245 e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alG---------f~q~v~k~~ivv~ll~geiPers~F~Qp~~~ 315 (493)
T KOG2581|consen 245 EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALG---------FRQQVNKLMIVVELLLGEIPERSVFRQPGMR 315 (493)
T ss_pred HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhh---------HHHHHHHHHHHHHHHcCCCcchhhhcCccHH
Confidence 5688888899999999999999999999999988744331 2222233334444556666655444443332
Q ss_pred cCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008251 477 LDSRNVKALYRRAQA--YIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (572)
Q Consensus 477 ~~p~~~ka~~~~g~a--~~~l~~~~~A~~~~~~al~l~P~~~~~~~~ 521 (572)
.....||.+.+| ...+.+|.+-++.|+.-+..+....-+..+
T Consensus 316 ---ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~LivRL 359 (493)
T KOG2581|consen 316 ---KSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYTLIVRL 359 (493)
T ss_pred ---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcchHHHHH
Confidence 134566666655 445667788888888777777665444333
No 438
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.35 E-value=74 Score=34.62 Aligned_cols=53 Identities=19% Similarity=0.158 Sum_probs=38.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008251 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (572)
Q Consensus 454 la~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 511 (572)
+=.+.+++++++.|...+ .+.++..-|-.+|.+.+..+++..|.++|.+|..+
T Consensus 643 rFelal~lgrl~iA~~la-----~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 643 RFELALKLGRLDIAFDLA-----VEANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhhhhcCcHHHHHHHH-----HhhcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 334456777877776643 33456677888899999999999999999888654
No 439
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.78 E-value=64 Score=32.81 Aligned_cols=40 Identities=10% Similarity=0.058 Sum_probs=35.1
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccC
Q 008251 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT 433 (572)
Q Consensus 394 e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~ 433 (572)
.+-+.+..+...|+.++..++|..|...|..|..++..-.
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~ 75 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIY 75 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 5667788999999999999999999999999999876433
No 440
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.22 E-value=1.5e+02 Score=32.12 Aligned_cols=113 Identities=23% Similarity=0.164 Sum_probs=74.3
Q ss_pred HHHHHHHH---cCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHh----
Q 008251 404 EQGNTLFK---AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD---- 476 (572)
Q Consensus 404 ~~G~~~~~---~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~---- 476 (572)
+.|..+|+ ..-|++|.+.|.-|+...+.+.-. ..-.-..+++..++.+|.....+|+.+.|.....++|-
T Consensus 240 q~~isfF~~~hs~sYeqaq~~F~~av~~~d~n~v~---~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~ 316 (665)
T KOG2422|consen 240 QKGISFFKFEHSNSYEQAQRDFYLAVIVHDPNNVL---ILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDR 316 (665)
T ss_pred cCceeEEEeecchHHHHHHHHHHHHHhhcCCccee---eeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence 34444443 345777777777777654322100 00000134566678899999999998877776666652
Q ss_pred -cCC----------------CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHH
Q 008251 477 -LDS----------------RN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD-NRDVK 519 (572)
Q Consensus 477 -~~p----------------~~---~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~-~~~~~ 519 (572)
+.| .| -.++||--+.+.+.|=+.-|.++++..++++|. |+-+.
T Consensus 317 a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~ 380 (665)
T KOG2422|consen 317 ALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGI 380 (665)
T ss_pred HhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhH
Confidence 122 22 367788888888999999999999999999999 76433
No 441
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.73 E-value=1.5e+02 Score=31.89 Aligned_cols=94 Identities=16% Similarity=0.073 Sum_probs=64.1
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008251 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (572)
Q Consensus 402 ~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (572)
+...+..+...|+-+.|+..++.++. ...++++..+++.+|.|+.-+.+|..|-.++...... .+.
T Consensus 270 ll~~ar~l~~~g~~eaa~~~~~~~v~-------------~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~de-sdW 335 (546)
T KOG3783|consen 270 LLMEARILSIKGNSEAAIDMESLSIP-------------IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDE-SDW 335 (546)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhccc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh-hhh
Confidence 34556666667776677777776664 2456778888999999999999999999999887765 445
Q ss_pred HHHHH--HHHHHHHh--------cCCHHHHHHHHHHHH
Q 008251 482 VKALY--RRAQAYIQ--------MADLDLAEFDIKKAL 509 (572)
Q Consensus 482 ~ka~~--~~g~a~~~--------l~~~~~A~~~~~~al 509 (572)
.+|+| ..|.|++. .++-++|...++.+.
T Consensus 336 S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~ 373 (546)
T KOG3783|consen 336 SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGE 373 (546)
T ss_pred hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHH
Confidence 56665 44455543 334455555554443
No 442
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=45.55 E-value=2.2e+02 Score=25.27 Aligned_cols=107 Identities=10% Similarity=0.021 Sum_probs=67.7
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 008251 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (572)
Q Consensus 402 ~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~ 481 (572)
+.+.........+...+.......--+-|..... ..--+..++..++|.+|+..++.+.+-.+..
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~---------------d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~ 77 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKEL---------------DMFDGWLLIARGNYDEAARILRELLSSAGAP 77 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcccc---------------chhHHHHHHHcCCHHHHHHHHHhhhccCCCc
Confidence 3444444455677777666655433333444333 3456888999999999999999999987777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008251 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (572)
Q Consensus 482 ~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l 525 (572)
+-+---++.|+..+++.+= +.+-..++.-+ .+.++..+.+.+
T Consensus 78 p~~kAL~A~CL~al~Dp~W-r~~A~~~le~~-~~~~a~~Lv~al 119 (153)
T TIGR02561 78 PYGKALLALCLNAKGDAEW-HVHADEVLARD-ADADAVALVRAL 119 (153)
T ss_pred hHHHHHHHHHHHhcCChHH-HHHHHHHHHhC-CCHhHHHHHHHH
Confidence 7666678999999998641 11222333333 334455555544
No 443
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=45.47 E-value=2.4e+02 Score=26.82 Aligned_cols=62 Identities=13% Similarity=-0.035 Sum_probs=49.1
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 008251 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482 (572)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ 482 (572)
...+.+.+..++|+..-..-++-.|.+... ..-+-..+.-.|+|++|+..|+-+-+++|+..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~---------------RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGG---------------RHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccc---------------hhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 446788899999999999888888876644 22344555567999999999999999999863
No 444
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=44.87 E-value=1.4e+02 Score=22.79 Aligned_cols=15 Identities=20% Similarity=0.078 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhCCCC
Q 008251 501 AEFDIKKALEIDPDN 515 (572)
Q Consensus 501 A~~~~~~al~l~P~~ 515 (572)
|++.|..+++.+|+.
T Consensus 32 aie~l~~~~k~e~~~ 46 (75)
T cd02678 32 ALEYFMHALKYEKNP 46 (75)
T ss_pred HHHHHHHHHhhCCCH
Confidence 333455555556643
No 445
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.98 E-value=2.3e+02 Score=29.74 Aligned_cols=112 Identities=14% Similarity=0.031 Sum_probs=69.4
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCC------HHHHH
Q 008251 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD------YKQAE 468 (572)
Q Consensus 395 ~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~------~~~Ai 468 (572)
-+-.+..+.++|..++++..|..|+-+.-.|-+.+....+. .-+...-.+.+.+.+--||+.+++ -+.-+
T Consensus 159 Almmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~k----lLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL 234 (568)
T KOG2561|consen 159 ALMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSK----LLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRL 234 (568)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHH----HHHhhcchhhhhcchhheehhhcccccCChHHHHH
Confidence 45567788999999999999999999988887765432210 000111122223345667777663 22333
Q ss_pred HHHHHHHhcC-------------CC-CHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHH
Q 008251 469 KLCTKVLDLD-------------SR-NVKALY-----RRAQAYIQMADLDLAEFDIKKALE 510 (572)
Q Consensus 469 ~~~~~al~~~-------------p~-~~ka~~-----~~g~a~~~l~~~~~A~~~~~~al~ 510 (572)
..|++-+... +. -.+|+| -.|...++.|+-++|.++|+.|-.
T Consensus 235 ~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 235 VRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3344433321 11 134544 458888999999999999988764
No 446
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=41.85 E-value=1e+02 Score=23.72 Aligned_cols=14 Identities=29% Similarity=0.370 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhcC
Q 008251 465 KQAEKLCTKVLDLD 478 (572)
Q Consensus 465 ~~Ai~~~~~al~~~ 478 (572)
..|+..+.+|++.|
T Consensus 4 ~~A~~l~~~Ave~d 17 (75)
T cd02677 4 EQAAELIRLALEKE 17 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555443
No 447
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=41.70 E-value=94 Score=24.00 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=7.4
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 008251 455 AACKLKLKDYKQAEKLCTK 473 (572)
Q Consensus 455 a~~~~k~~~~~~Ai~~~~~ 473 (572)
|.-+-+.|+|.+|+.+|..
T Consensus 13 Ave~D~~g~y~eA~~~Y~~ 31 (76)
T cd02681 13 AVQRDQEGRYSEAVFYYKE 31 (76)
T ss_pred HHHHHHccCHHHHHHHHHH
Confidence 3333333444444443333
No 448
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=41.67 E-value=53 Score=30.64 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=42.8
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHH
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE 468 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai 468 (572)
++-....|. +|.+.+-.+|+..|.+++++...+.... ..++.-||..|.++++++.|=
T Consensus 141 ~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n-----------~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 141 AELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFN-----------PEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCC-----------HHHHHHHHHHHHHhcchhhhh
Confidence 333444454 4457899999999999999887764442 345778999999999998874
No 449
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.13 E-value=65 Score=29.35 Aligned_cols=50 Identities=14% Similarity=0.295 Sum_probs=42.3
Q ss_pred HHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 008251 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM 495 (572)
Q Consensus 445 ~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l 495 (572)
.+++.+.-.|+.+.+|.|+|..|...+.++.. |.+.+....+|+++.+.+
T Consensus 164 ~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 164 PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 46677777899999999999999999998877 777788888888887654
No 450
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=40.76 E-value=1.6e+02 Score=31.82 Aligned_cols=105 Identities=11% Similarity=0.082 Sum_probs=65.7
Q ss_pred HHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008251 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520 (572)
Q Consensus 441 ~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~ 520 (572)
.+.+..-+..++.|-.-+..+ .++++...|++.+...|..+.+|---....++.++|+.-...|.++|..-=+ -+.+.
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~ 90 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWK 90 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHH
Confidence 333444455565555544333 7888888888888888888888888888888888888888888888854322 23333
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHhhhhcc
Q 008251 521 EY----KTLKEKMKEYNKKEAKFYGNMFAKM 547 (572)
Q Consensus 521 ~l----~~l~~~~~~~~~~~~~~~~~~f~~~ 547 (572)
.+ ++.+..+...++...+.|.-...+.
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~ki 121 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKI 121 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHh
Confidence 32 2233333344555555555444443
No 451
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=40.48 E-value=2.5e+02 Score=32.21 Aligned_cols=85 Identities=8% Similarity=0.001 Sum_probs=68.0
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcC---
Q 008251 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD--- 478 (572)
Q Consensus 402 ~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~--- 478 (572)
.--+|.....+++++.|...-+.++..++..... .++.++.+++.++.-.|++.+|+.+...+.++.
T Consensus 461 ~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~----------~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 461 QALRAQVALNRGDPEEAEDLARLALVQLPEAAYR----------SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch----------hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence 3345677788899999999999999999876654 357788999999999999999999999988763
Q ss_pred -CCC--HHHHHHHHHHHHhcC
Q 008251 479 -SRN--VKALYRRAQAYIQMA 496 (572)
Q Consensus 479 -p~~--~ka~~~~g~a~~~l~ 496 (572)
.-+ ..+.+..+..+...|
T Consensus 531 ~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 531 DVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred ccHHHHHHHHHHHHHHHHHhh
Confidence 222 455567788888888
No 452
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=39.69 E-value=49 Score=25.48 Aligned_cols=18 Identities=17% Similarity=0.089 Sum_probs=11.0
Q ss_pred hcCCHHHHHHHHHHHHHh
Q 008251 494 QMADLDLAEFDIKKALEI 511 (572)
Q Consensus 494 ~l~~~~~A~~~~~~al~l 511 (572)
..|+|++|+..|..|+++
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 356666666666666643
No 453
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=38.86 E-value=44 Score=19.70 Aligned_cols=24 Identities=8% Similarity=0.094 Sum_probs=12.3
Q ss_pred HhhHHHHHHhcCCHHHHHHHHHHH
Q 008251 451 NLNNAACKLKLKDYKQAEKLCTKV 474 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~a 474 (572)
|+.+-.+|.+.+++++|...+++.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHH
Confidence 334445555555555555555443
No 454
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=38.07 E-value=3.3e+02 Score=28.96 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=34.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008251 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (572)
Q Consensus 459 ~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al 509 (572)
+++|+.+.|.+.+ ...++...|-++|.+.+..|+++-|.++|+++-
T Consensus 329 l~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 329 LQLGNLDIALEIA-----KELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HhcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 4667777776644 233467789999999999999999999988763
No 455
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.93 E-value=2.9e+02 Score=28.04 Aligned_cols=127 Identities=16% Similarity=0.047 Sum_probs=75.6
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhccC---C-----C--------Ch--HHHHHHHHHHHHhHhhHHHHHHhcCCH
Q 008251 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDT---S-----F--------GD--EEKKQAKALKVACNLNNAACKLKLKDY 464 (572)
Q Consensus 403 k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~---~-----~--------~~--e~~~~~~~~~~~~~~nla~~~~k~~~~ 464 (572)
.+.|..++..++|.+....+..|-....... . + .+ -+.....-.+..+++.+|.-|+.++++
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~ 141 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDS 141 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcch
Confidence 4678888888888776666554433211100 0 0 00 011111223455567789999999999
Q ss_pred HHHHHHHHHHHhcC------------------------CCCH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008251 465 KQAEKLCTKVLDLD------------------------SRNV-----------KALYRRAQAYIQMADLDLAEFDIKKAL 509 (572)
Q Consensus 465 ~~Ai~~~~~al~~~------------------------p~~~-----------ka~~~~g~a~~~l~~~~~A~~~~~~al 509 (572)
+.|+--+++|++.. |+-. .-|.+...-|-.-+++-.+-.+|.+++
T Consensus 142 ~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~~~yea~~~l~npYv~Yl~~l 221 (449)
T COG3014 142 AKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNYLDKYEAYQGLLNPYVSYLSGL 221 (449)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 88887777776432 2211 123345566666677778888888888
Q ss_pred HhCCCCHHHHHHHHHHHHHHH
Q 008251 510 EIDPDNRDVKLEYKTLKEKMK 530 (572)
Q Consensus 510 ~l~P~~~~~~~~l~~l~~~~~ 530 (572)
-..|++ ++......+.....
T Consensus 222 f~a~n~-dv~kg~~~~~e~~g 241 (449)
T COG3014 222 FYALNG-DVNKGLGYLNEAYG 241 (449)
T ss_pred hcccCc-cHhHHHHHHHHHhc
Confidence 888887 56666665555443
No 456
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.92 E-value=5.9e+02 Score=30.11 Aligned_cols=62 Identities=11% Similarity=-0.105 Sum_probs=51.8
Q ss_pred HHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008251 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (572)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~ 514 (572)
..++..+|.+++..+...+|++.|-+| +++..|...-.+..+.|.|++-+.++..|-+...+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E 1165 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE 1165 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC
Confidence 456889999999999999999999655 45677888888899999999999999988876433
No 457
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=37.69 E-value=2.5e+02 Score=30.21 Aligned_cols=95 Identities=21% Similarity=0.214 Sum_probs=62.2
Q ss_pred HhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008251 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~~~ 530 (572)
+..+-..+-...+|+-..+.|+++|++ ..+--||+.+++||... .-+.-....++..+.+=++...-.+|........
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~-~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEkik 146 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEY-GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEKIK 146 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 444445555566788889999999997 45678999999999988 4455566667777777777655555554444332
Q ss_pred HHHHHHHHHHHhhhhcccC
Q 008251 531 EYNKKEAKFYGNMFAKMSM 549 (572)
Q Consensus 531 ~~~~~~~~~~~~~f~~~~~ 549 (572)
..+-...|++...++..
T Consensus 147 --~sk~a~~f~Ka~yrfI~ 163 (711)
T COG1747 147 --KSKAAEFFGKALYRFIP 163 (711)
T ss_pred --hhhHHHHHHHHHHHhcc
Confidence 22334455555555443
No 458
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.85 E-value=2e+02 Score=29.20 Aligned_cols=123 Identities=14% Similarity=0.073 Sum_probs=68.9
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHH-HHH-HHhHhhHHHHHHhcCCHHHHHH-HH-
Q 008251 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK-ALK-VACNLNNAACKLKLKDYKQAEK-LC- 471 (572)
Q Consensus 396 ~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~-~~~-~~~~~nla~~~~k~~~~~~Ai~-~~- 471 (572)
.+......-+|-.|+...+++.|.--|.+|............++..+.. ++. ...--|+...... -.+++. .|
T Consensus 122 YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae---~s~~i~n~Y~ 198 (449)
T COG3014 122 YEGVLINYYKALNYMLLNDSAKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAE---VSEILNNTYS 198 (449)
T ss_pred HHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHH---HHHHHHHHHH
Confidence 3445556677778888888888888888777654432222222211111 111 0111122222111 111111 01
Q ss_pred HHHHhcC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008251 472 TKVLDLD----SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (572)
Q Consensus 472 ~~al~~~----p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~ 521 (572)
.-+++.+ =.|+-+-|++|..+.-.+++.++...+..++-+.|+.+.+.++
T Consensus 199 ny~~~yea~~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~~~q 252 (449)
T COG3014 199 NYLDKYEAYQGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPFVAQ 252 (449)
T ss_pred HHHHHHHhhcccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHHHHH
Confidence 1122222 2478889999999999999999999999999999985444333
No 459
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=36.39 E-value=1.3e+02 Score=29.84 Aligned_cols=48 Identities=23% Similarity=0.229 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008251 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (572)
Q Consensus 480 ~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~ 527 (572)
...+++..++.++...++++.+...+++.+.++|.+..+...+-....
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~ 198 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYL 198 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 456899999999999999999999999999999999777666655433
No 460
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=35.75 E-value=1.3e+02 Score=29.05 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHh-cCCHHHHHHHHHHHHh
Q 008251 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLD 476 (572)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k-~~~~~~Ai~~~~~al~ 476 (572)
-+.|...|+.|+++.......+ +.++..+.+|.+..|+. +++.++|+...++|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt-------~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPT-------HPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCC-------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4588999999998865422221 25667778888888776 4788888877766653
No 461
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=35.38 E-value=3.6e+02 Score=26.27 Aligned_cols=103 Identities=15% Similarity=0.014 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCC-CChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcC
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-FGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~-~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~ 478 (572)
+-+.+=+..+++.+++..|.+.-.-.++.+..... .+++....+.++...+-.+--. +..=-++|+.+. +.-...
T Consensus 11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~---r~~fi~~ai~WS-~~~~~~ 86 (260)
T PF04190_consen 11 DLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPE---RKKFIKAAIKWS-KFGSYK 86 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TT---HHHHHHHHHHHH-HTSS-T
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcch---HHHHHHHHHHHH-ccCCCC
Confidence 34455557778888888888777666666554332 2222222222222111100000 000123444444 222222
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008251 479 SRNVKALYRRAQAYIQMADLDLAEFDIK 506 (572)
Q Consensus 479 p~~~ka~~~~g~a~~~l~~~~~A~~~~~ 506 (572)
-.++..+...|..|.+-+++.+|..+|-
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 2568888999999999999999888873
No 462
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=35.06 E-value=5.1e+02 Score=26.45 Aligned_cols=70 Identities=20% Similarity=0.175 Sum_probs=56.1
Q ss_pred HHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHh----cCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008251 443 AKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD----LDS--RNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (572)
Q Consensus 443 ~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~----~~p--~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 512 (572)
..-++..+-..+...|+..++|.+|+.....++. +|. .-+..+..-+++|+.+.+.-+|...+..|-...
T Consensus 123 RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~A 198 (411)
T KOG1463|consen 123 RTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTA 198 (411)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhh
Confidence 3446667777899999999999999999888764 332 336778888999999999999999998886653
No 463
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=35.01 E-value=1.6e+02 Score=22.53 Aligned_cols=16 Identities=25% Similarity=0.088 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhCCCC
Q 008251 500 LAEFDIKKALEIDPDN 515 (572)
Q Consensus 500 ~A~~~~~~al~l~P~~ 515 (572)
.|++.|..+++.+++.
T Consensus 31 ~ale~~~~~~k~e~~~ 46 (75)
T cd02684 31 SALQYFVPALHYETDA 46 (75)
T ss_pred HHHHHHHHHHhhCCCH
Confidence 3444455555555443
No 464
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=34.74 E-value=6.6e+02 Score=32.53 Aligned_cols=67 Identities=16% Similarity=0.058 Sum_probs=60.5
Q ss_pred HHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008251 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (572)
Q Consensus 444 ~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 512 (572)
+.....+|++.|....+.|+++.|-.+.-.|.+.. -++++..+|+-+-..|+-..|+..++..++++
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 45567889999999999999999999999888876 67899999999999999999999999999764
No 465
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=34.01 E-value=29 Score=35.08 Aligned_cols=75 Identities=13% Similarity=0.021 Sum_probs=51.1
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 008251 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA 484 (572)
Q Consensus 405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka 484 (572)
.+...++.+.+..|+..-..+++..+. ....|+.+++.++.+.++++|+.++..+....|++...
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~~~~s---------------~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i 345 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALRDERS---------------KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI 345 (372)
T ss_pred hHHhcccccCCCcceeccccccccChh---------------hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence 444555666666666555555542111 23458899999999999999999999999999988655
Q ss_pred HHHHHHHHHh
Q 008251 485 LYRRAQAYIQ 494 (572)
Q Consensus 485 ~~~~g~a~~~ 494 (572)
.-++..+-..
T Consensus 346 ~~~~~~~~~~ 355 (372)
T KOG0546|consen 346 EEELENVRQK 355 (372)
T ss_pred HHHHHHhhhH
Confidence 5444444333
No 466
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=33.91 E-value=85 Score=18.78 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008251 485 LYRRAQAYIQMADLDLAEFDIKKALE 510 (572)
Q Consensus 485 ~~~~g~a~~~l~~~~~A~~~~~~al~ 510 (572)
|..+-.+|.+.+++++|.+.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455667777777887777776543
No 467
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=33.36 E-value=5.3e+02 Score=26.15 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=17.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008251 487 RRAQAYIQMADLDLAEFDIKKALEIDP 513 (572)
Q Consensus 487 ~~g~a~~~l~~~~~A~~~~~~al~l~P 513 (572)
|+|.|-.++|+..+|++.++...+-.|
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 566666666666666666665555444
No 468
>PHA02122 hypothetical protein
Probab=33.14 E-value=65 Score=22.85 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=16.9
Q ss_pred CCCCEEEEEEEEEecCCCEEee
Q 008251 54 ENGDEVEVHYTGTLLDGTQFDS 75 (572)
Q Consensus 54 ~~gd~V~v~y~~~~~~g~~~~~ 75 (572)
..||.|.++|++.. +|+.|-.
T Consensus 39 ~~gd~v~vn~e~~~-ng~l~i~ 59 (65)
T PHA02122 39 DDGDEVIVNFELVV-NGKLIIN 59 (65)
T ss_pred cCCCEEEEEEEEEE-CCEEEEe
Confidence 47999999999986 8877643
No 469
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=32.84 E-value=1e+02 Score=26.27 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=32.5
Q ss_pred hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhc
Q 008251 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (572)
Q Consensus 392 ~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (572)
.+++...-....+.|..+...|++.+|+.+|-+|+.+++.
T Consensus 56 ~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 56 PEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 4455555667789999999999999999999999998764
No 470
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=32.61 E-value=1.5e+02 Score=22.86 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=32.6
Q ss_pred ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHh
Q 008251 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYI 429 (572)
Q Consensus 391 ~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~ 429 (572)
..++.++.|..+.+.|..++++|++..|+.++.=|--++
T Consensus 27 ~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~GwL 65 (75)
T PF04010_consen 27 AAEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHGWL 65 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999987665544
No 471
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.48 E-value=59 Score=33.05 Aligned_cols=101 Identities=13% Similarity=0.137 Sum_probs=69.2
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHH-HHhc-
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK-VLDL- 477 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~-al~~- 477 (572)
..++..+....+++....-++...+|+........ ....++--+.+|.++.++|.-++.+.+- ..++
T Consensus 103 ~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~-----------qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~ 171 (422)
T KOG2582|consen 103 PLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNG-----------QLTSIHADLLQLCLEAKDYASVLPYLDDDIVEIC 171 (422)
T ss_pred HHHHHHHHHHHhcCCccccchHHHHHHHHhccCcc-----------chhhhHHHHHHHHHHhhcccccCCccchhHHHHh
Confidence 34566777777777777777777777776544331 2344566777888888988887766643 2222
Q ss_pred --CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008251 478 --DSRN-----VKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (572)
Q Consensus 478 --~p~~-----~ka~~~~g~a~~~l~~~~~A~~~~~~al~l 511 (572)
+|.. ...+|+-|..+..+++|+.|+.+|..++..
T Consensus 172 ~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 172 KANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred ccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 3322 345677888899999999999999988753
No 472
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=32.45 E-value=2.8e+02 Score=22.78 Aligned_cols=47 Identities=26% Similarity=0.259 Sum_probs=29.8
Q ss_pred HhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 008251 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD 497 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~ 497 (572)
.+..|...+-.|+|..|.+...++-+..+...-.|.--|++-..+||
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 45666666777777777777777766655555555555555555543
No 473
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=31.93 E-value=1e+02 Score=30.79 Aligned_cols=65 Identities=11% Similarity=0.132 Sum_probs=47.7
Q ss_pred HHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 008251 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALY 486 (572)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~ 486 (572)
-..+.+-|..-.+.|.+++...|.+.+.+- +.-+.-+.-..++..|...+.++|+++|.+++.|+
T Consensus 116 Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI--------------~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 116 YVIKKKMYGEMKNIFAECLTKHPLNVDLWI--------------YCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCceeee--------------eeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 334556778888899999998887765521 11233344567899999999999999999987654
No 474
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=31.77 E-value=1.8e+02 Score=29.94 Aligned_cols=45 Identities=18% Similarity=0.049 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008251 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIK 506 (572)
Q Consensus 462 ~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~ 506 (572)
...-.|+..++.++..+|.|....+.+.+.|..+|-...|...|.
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 346778888899999999999999999999999999999988875
No 475
>PF13041 PPR_2: PPR repeat family
Probab=31.00 E-value=1.7e+02 Score=19.80 Aligned_cols=27 Identities=11% Similarity=0.042 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008251 484 ALYRRAQAYIQMADLDLAEFDIKKALE 510 (572)
Q Consensus 484 a~~~~g~a~~~l~~~~~A~~~~~~al~ 510 (572)
.|.-+-.+|.+.|++++|.+.|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344455556666666666666655554
No 476
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=30.64 E-value=5.7e+02 Score=25.70 Aligned_cols=57 Identities=23% Similarity=0.229 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHH
Q 008251 464 YKQAEKLCTKVLDLDS--RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK-TLKEKMK 530 (572)
Q Consensus 464 ~~~Ai~~~~~al~~~p--~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~-~l~~~~~ 530 (572)
.++||....+|+..|. +..+|| .-|+.|+++|..+++.+.+++.++..++ ++.+.+.
T Consensus 7 l~kaI~lv~kA~~eD~a~nY~eA~----------~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLd 66 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNAKNYEEAL----------RLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLD 66 (439)
T ss_pred HHHHHHHHHHHhhhcchhchHHHH----------HHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHH
Confidence 4678888888887653 222332 2357789999999999877765555443 3444443
No 477
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=30.61 E-value=1.4e+02 Score=32.89 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=35.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008251 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (572)
Q Consensus 454 la~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al 509 (572)
+-+.+...++|.+|....++.-++-| ..|+..|+-+....+|+||.+.|.+|=
T Consensus 779 iVqlHve~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred HhhheeecccchHhHhhhhhCccccc---cccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 34455556788888877666544433 566777777777778888877776663
No 478
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=29.74 E-value=1e+02 Score=18.52 Aligned_cols=25 Identities=16% Similarity=-0.067 Sum_probs=15.7
Q ss_pred HhhHHHHHHhcCCHHHHHHHHHHHH
Q 008251 451 NLNNAACKLKLKDYKQAEKLCTKVL 475 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al 475 (572)
|..+-.++.+.++++.|...++.-.
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555666666777777666665543
No 479
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=29.25 E-value=4.6e+02 Score=24.24 Aligned_cols=81 Identities=21% Similarity=0.134 Sum_probs=46.4
Q ss_pred CcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhc-----C--CHHHHHHHHHHHHhcCCCCHHHH
Q 008251 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----K--DYKQAEKLCTKVLDLDSRNVKAL 485 (572)
Q Consensus 413 g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~-----~--~~~~Ai~~~~~al~~~p~~~ka~ 485 (572)
++.+.|++.|..|.+.... .+..++++.+..- . +-.+|++++.++-.+ ++..|-
T Consensus 87 ~~l~~a~r~~~~aC~~n~~-----------------~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl--~~~~aC 147 (248)
T KOG4014|consen 87 ASLSKAIRPMKIACDANIP-----------------QACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL--EDGEAC 147 (248)
T ss_pred cCHHHHHHHHHHHhccCCH-----------------HHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC--CCchHH
Confidence 3466677777766653221 1233555544432 1 356788888888765 344555
Q ss_pred HHHHHHHHhc------------------------CCHHHHHHHHHHHHHhC
Q 008251 486 YRRAQAYIQM------------------------ADLDLAEFDIKKALEID 512 (572)
Q Consensus 486 ~~~g~a~~~l------------------------~~~~~A~~~~~~al~l~ 512 (572)
|.++..|+.- .+.+.|.+.-.+|-+++
T Consensus 148 f~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~ 198 (248)
T KOG4014|consen 148 FLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD 198 (248)
T ss_pred HHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC
Confidence 5555555443 55667777766666665
No 480
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=28.99 E-value=2e+02 Score=25.66 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=69.7
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhc-------cC------------------CCC-hHHHHHHHHHHHHhHhh
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEY-------DT------------------SFG-DEEKKQAKALKVACNLN 453 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~-------~~------------------~~~-~e~~~~~~~~~~~~~~n 453 (572)
-.....+......|+.+.|.....+|...+.. .. +.. .+. -...........
T Consensus 3 ~~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~--~~~~~~~~~ai~ 80 (155)
T PF10938_consen 3 MRDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDD--YVPTPEKKAAIK 80 (155)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE--------HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeec--cCChHHHHHHHH
Confidence 34556677788889999999999888876531 11 000 000 011122333557
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH-hcC------C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008251 454 NAACKLKLKDYKQAEKLCTKVL-DLD------S-RNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (572)
Q Consensus 454 la~~~~k~~~~~~Ai~~~~~al-~~~------p-~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 510 (572)
.+.-+++.|+.+.|.+.++.+- +++ | .....-..++..++..|++++|...++.|+.
T Consensus 81 ~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 81 TANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8899999999999999887642 222 2 1234556788999999999999999999874
No 481
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=28.27 E-value=5.5e+02 Score=25.55 Aligned_cols=72 Identities=14% Similarity=0.181 Sum_probs=57.5
Q ss_pred HHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHh----cC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008251 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD----LD--SRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (572)
Q Consensus 441 ~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~----~~--p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~ 512 (572)
++..-++..+-.-++..+++.++|..|+...+.++. +| ++-...+..-.++|.+..+..++...+..|-.+.
T Consensus 118 Ekr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~A 195 (421)
T COG5159 118 EKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLA 195 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 344456667777899999999999999999887764 22 4557788889999999999999999998877654
No 482
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.69 E-value=84 Score=32.01 Aligned_cols=55 Identities=13% Similarity=0.150 Sum_probs=45.1
Q ss_pred HhhHHHHHHhcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008251 451 NLNNAACKLKLKDYKQAEKLCTKVLDLD--------SRNVKALYRRAQAYIQMADLDLAEFDI 505 (572)
Q Consensus 451 ~~nla~~~~k~~~~~~Ai~~~~~al~~~--------p~~~ka~~~~g~a~~~l~~~~~A~~~~ 505 (572)
+...|+-++.+++|+.|...+..|..+. -++..++|..|++++.+++++.+.-.+
T Consensus 44 lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 44 LVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4467778888999999999999998764 245789999999999999988777544
No 483
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=27.50 E-value=1.1e+02 Score=23.78 Aligned_cols=17 Identities=41% Similarity=0.372 Sum_probs=11.7
Q ss_pred CHHHHHHHHHHHHhcCC
Q 008251 463 DYKQAEKLCTKVLDLDS 479 (572)
Q Consensus 463 ~~~~Ai~~~~~al~~~p 479 (572)
-|+.|..+.++||..|.
T Consensus 4 ~~~~A~~~I~kaL~~dE 20 (79)
T cd02679 4 YYKQAFEEISKALRADE 20 (79)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 46777777777777654
No 484
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=27.03 E-value=1.9e+02 Score=24.16 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=35.6
Q ss_pred cCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHh
Q 008251 388 WDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYI 429 (572)
Q Consensus 388 ~~~~~~e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~ 429 (572)
+..+...-+..|..+..+|..++..|+.+.|--.|-+.+.++
T Consensus 27 ~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 27 KNIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 455667778899999999999999999999999999998876
No 485
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=26.83 E-value=4.4e+02 Score=26.12 Aligned_cols=98 Identities=13% Similarity=0.133 Sum_probs=52.0
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHH-HHHHHHHH
Q 008251 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ-AEKLCTKV 474 (572)
Q Consensus 396 ~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~-Ai~~~~~a 474 (572)
++.+......-..++..|+|..|+..+...-+.+.....+. -+...-.++.++.. .....+.+
T Consensus 124 i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~----------------c~~~L~~~L~e~~~~i~~~ld~~ 187 (291)
T PF10475_consen 124 IKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYS----------------CVRHLSSQLQETLELIEEQLDSD 187 (291)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccch----------------HHHHHhHHHHHHHHHHHHHHHHH
Confidence 34445555666778889999999999988877765433221 01111111111111 11111111
Q ss_pred Hhc-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008251 475 LDL-D-SRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (572)
Q Consensus 475 l~~-~-p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al 509 (572)
|.. . .=++..|-..=.||..+|+...+.+-+....
T Consensus 188 l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f 224 (291)
T PF10475_consen 188 LSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHF 224 (291)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 110 0 1145667777778888888777775555443
No 486
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=26.55 E-value=8.9e+02 Score=26.61 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=32.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008251 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEF 503 (572)
Q Consensus 459 ~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~ 503 (572)
-..|++..|...+++..+-.|+.+.+-++.+....++++.+.|..
T Consensus 377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 345677777777777776667777777777777777777777763
No 487
>PRK11619 lytic murein transglycosylase; Provisional
Probab=25.60 E-value=1.9e+02 Score=32.48 Aligned_cols=54 Identities=11% Similarity=0.057 Sum_probs=43.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008251 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (572)
Q Consensus 457 ~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~ 510 (572)
..+..++|..+..++...-....+.....|.+|+++..+|+.++|...|+++..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 445778888887777775443345789999999999999999999999999754
No 488
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=25.25 E-value=3.9e+02 Score=24.66 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=23.5
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 008251 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA 484 (572)
Q Consensus 453 nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka 484 (572)
....++++.|.|++|.+.+++... +|++.+-
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 455667788888888888888888 7776655
No 489
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=25.24 E-value=2.4e+02 Score=31.48 Aligned_cols=65 Identities=11% Similarity=0.058 Sum_probs=41.4
Q ss_pred HHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008251 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (572)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~~~~l~ 523 (572)
+..++.|+|..+..+..|..|.++|.+.-.. -+...||+++..|++-... ...-|++......++
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~le~f~~LE~l----a~~Lpe~s~llp~~a 859 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRLELFGELEVL----ARTLPEDSELLPVMA 859 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHHHhhhhHHHH----HHhcCcccchHHHHH
Confidence 4455778999999999999999988765332 3456677777777654333 233355544443333
No 490
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=25.19 E-value=1.4e+02 Score=24.61 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=31.3
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 008251 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKY 428 (572)
Q Consensus 393 ~e~~~~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~ 428 (572)
.-+.+.+.+...+|-..+..|||..|.+...++.+.
T Consensus 53 ~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 53 RRRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 446677888899999999999999999999999765
No 491
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=25.00 E-value=5.7e+02 Score=23.83 Aligned_cols=100 Identities=17% Similarity=0.099 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 008251 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (572)
Q Consensus 400 ~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~~~p 479 (572)
.++-..+..+..+|++++|...+++|.+....... .+.. .. -+++-+.|.--+..|-+|...+.-.-.-+-
T Consensus 30 ~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~-------~l~~-~p-el~~ag~~~~a~QEyvEA~~l~~~l~~~~~ 100 (204)
T COG2178 30 VRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKR-------LLAG-FP-ELYFAGFVTTALQEYVEATLLYSILKDGRL 100 (204)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-------HHhh-hH-HHHHHHhhcchHHHHHHHHHHHHHHhcCCC
Confidence 34456667778899999999999999876543210 0000 11 134556677677889999988877655432
Q ss_pred CC-------HHHH-----------HHHHHHHHhcCCHHHHHHHHHHH
Q 008251 480 RN-------VKAL-----------YRRAQAYIQMADLDLAEFDIKKA 508 (572)
Q Consensus 480 ~~-------~ka~-----------~~~g~a~~~l~~~~~A~~~~~~a 508 (572)
.. +.+| -|...-.+..++++.|...++-.
T Consensus 101 ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~M 147 (204)
T COG2178 101 PSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFM 147 (204)
T ss_pred CCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 21 2222 24455567789999998877543
No 492
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=24.21 E-value=1.5e+02 Score=18.76 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHH
Q 008251 464 YKQAEKLCTKVLDLDSRNVKALYRR 488 (572)
Q Consensus 464 ~~~Ai~~~~~al~~~p~~~ka~~~~ 488 (572)
++.|...|++.+...| +++.|.+.
T Consensus 3 ~dRAR~IyeR~v~~hp-~~k~Wiky 26 (32)
T PF02184_consen 3 FDRARSIYERFVLVHP-EVKNWIKY 26 (32)
T ss_pred HHHHHHHHHHHHHhCC-CchHHHHH
Confidence 4445555555544443 24444433
No 493
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=22.85 E-value=1.9e+02 Score=24.56 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008251 487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (572)
Q Consensus 487 ~~g~a~~~l~~~~~A~~~~~~al~l~P~~~~~ 518 (572)
.+|..++..|++++|..+|-+|+.+-|+-.+.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~L 99 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAEL 99 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 46777777777777777777787777775433
No 494
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=22.80 E-value=5e+02 Score=23.58 Aligned_cols=69 Identities=17% Similarity=0.109 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 008251 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-RDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547 (572)
Q Consensus 479 p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~ 547 (572)
|--..++|+.++-|-..-=..-+...++...++||+- .++...+..-+.+.++...+.+..+++.+...
T Consensus 94 PIifpaL~~ns~~HWN~~V~~lt~nvlK~f~emD~~LF~ec~~~~ke~~~~~~~~~~~r~~~W~~le~~A 163 (170)
T PLN00122 94 PIIFPALEKNTRGHWNQAVHGLTLNVRKMFSEMDPELFEECLRKFEEDEAKAKEVEEKREATWKRLEEAA 163 (170)
T ss_pred HHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555554443333344555556666667653 23333333333333333444445555555443
No 495
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=22.46 E-value=2.4e+02 Score=24.90 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=34.5
Q ss_pred ChHHHHHHHhhhHHHHHHHHHcC-cHHHHHHHHHHHHHHhhc
Q 008251 391 NTEEKIEAAGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEY 431 (572)
Q Consensus 391 ~~~e~~~~a~~~k~~G~~~~~~g-~~~~A~~~y~~al~~~~~ 431 (572)
+.+++...=......|..+...| ++.+|+.+|-+||.+++.
T Consensus 82 d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 82 DPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 44566666677889999999999 999999999999998775
No 496
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=22.43 E-value=3.8e+02 Score=20.93 Aligned_cols=33 Identities=12% Similarity=0.208 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008251 496 ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (572)
Q Consensus 496 ~~~~~A~~~~~~al~l~P~~~~~~~~l~~l~~~ 528 (572)
++...++.....+++.+|+|+.+...+......
T Consensus 21 ~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~e 53 (80)
T PRK15326 21 DNLQTQVTEALDKLAAKPSDPALLAAYQSKLSE 53 (80)
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 445556666666677888887766666554333
No 497
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=21.68 E-value=1.7e+02 Score=26.14 Aligned_cols=71 Identities=20% Similarity=0.180 Sum_probs=47.5
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhcc-CCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHHHHHHh
Q 008251 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (572)
Q Consensus 398 ~a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~-~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~~~al~ 476 (572)
........+|.+++.|+.+.|.+..+.+-.-.... ...+- -......+.|..++..|+|.+|-..+..++.
T Consensus 74 ~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL--------~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 74 EKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPL--------AQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEH--------HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCH--------HhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 35667889999999999999999887654321111 00000 0112245899999999999999999988874
No 498
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=21.58 E-value=6.5e+02 Score=27.79 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=35.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008251 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (572)
Q Consensus 460 k~~~~~~Ai~~~~~al~~~p~~~ka~~~~g~a~~~l~~~~~A~~~~~~al~l~P~~ 515 (572)
+....+.+....+.-+-.......+++.+|+.+...++.+.|-++|++.+..+|+|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDE 75 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcc
Confidence 33444444444444444444556667777777777777777777777777777775
No 499
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=21.54 E-value=3.8e+02 Score=25.65 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=46.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHH---------hcCCHHHHHH
Q 008251 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL---------KLKDYKQAEK 469 (572)
Q Consensus 399 a~~~k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~---------k~~~~~~Ai~ 469 (572)
|+...+.+...++.|+-.+. .|...+..+.......+ .++.++|--+|..++ ..++...|+.
T Consensus 129 aeev~~~A~~~~~ag~~~e~--~~~~~~~~l~~~~dmpd-------~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~ 199 (230)
T PHA02537 129 AEEVANAALKAASAGESVEP--YFLRVFLDLTTEWDMPD-------EVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALA 199 (230)
T ss_pred HHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHhcCCCCh-------HHHHHHHHHHHHHHhhcccCCCccCcccHHHHHH
Confidence 44455556666666652111 12333333333344433 456666667777774 3457889999
Q ss_pred HHHHHHhcCCCC-HHHHH
Q 008251 470 LCTKVLDLDSRN-VKALY 486 (572)
Q Consensus 470 ~~~~al~~~p~~-~ka~~ 486 (572)
+|++|++++|+. +|-..
T Consensus 200 ~L~rA~~l~~k~GVK~~i 217 (230)
T PHA02537 200 LLQRAFQLNDKCGVKKDI 217 (230)
T ss_pred HHHHHHHhCCCCChHHHH
Confidence 999999999864 45433
No 500
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=21.44 E-value=3.4e+02 Score=19.93 Aligned_cols=60 Identities=27% Similarity=0.256 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHhHhhHHHHHHhcCCHHHHHHHH
Q 008251 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC 471 (572)
Q Consensus 403 k~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~e~~~~~~~~~~~~~~nla~~~~k~~~~~~Ai~~~ 471 (572)
...|..+|..|+|-+|-+..+.+=...+. ++ ..-++..+....|..+++.|+...|...+
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~------~~---~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPG------PE---RDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-C------CH---HHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCc------ch---HHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 45788999999999999988875432111 12 22333444556677777888888887643
Done!