BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008252
(572 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 125/432 (28%), Positives = 200/432 (46%), Gaps = 27/432 (6%)
Query: 153 IIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHI 212
+++ P S +EV I K ++ +V ++P GG T + G NG V I L ++ +
Sbjct: 54 LVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRXDKIREIDT 113
Query: 213 EDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGA--TIGGMCATRCSGSLAVRYGTMRD 270
+ VE G + E FPL G TIGG +T G+ A+ YG RD
Sbjct: 114 SSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARD 173
Query: 271 NVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVV 330
+ ++VVLA+G V S+ +K GYDL L IG+EGTLGIIT TL+L P+
Sbjct: 174 XALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVET 233
Query: 331 ATCNFPTIKDAAD-VAIATMLSGIQVSRVELLDEVQVR-AVNIANGKNLPELPTLMFEFI 388
A + DA + IA + ++ EL+ E + +V AN ++ E + I
Sbjct: 234 AFVGLQSPDDALKLLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPWYVLI 293
Query: 389 GTQAYSHEQTLIVQKIVSE--HNG--TDFIFAEDPEAKKELWKMRKEALWACFAMEPSFE 444
+ + ++ I+ +G D A + ++ WK+R+E A +P
Sbjct: 294 ELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREE---ISPAQKPEGG 350
Query: 445 AMISDVCVPLSCLAELISRSKKELDASPLICTV----IAHAGDGNFHTVILFDPSKEEDR 500
++ D+ VP++ + + I ++ + A LI H GDGN H ++ S+
Sbjct: 351 SIKHDISVPVAAVPQFIEQANAAVVA--LIPGARPVPFGHLGDGNIH----YNVSQPVGA 404
Query: 501 QEAERLNRF------MVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVAL 554
+AE L R+ + L + G+ + EHGIG K L + A+E + IK L
Sbjct: 405 DKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVXKRDELAEVKDKTAIELXRSIKALL 464
Query: 555 DPNNIMNPGKLI 566
DP+ I NPGK++
Sbjct: 465 DPHGIXNPGKVV 476
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUV|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P1
Length = 584
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 126/501 (25%), Positives = 215/501 (42%), Gaps = 48/501 (9%)
Query: 109 KEIPQELVDELKAI-CQDDMTMDYEERYIH--GKPQNSF-----HKAVNIPDIIVFPRSE 160
K+ P E V ELKA D + D R H GK + N PD+IV P S
Sbjct: 89 KQYP-EFVRELKAFFLPDQLKDDKLARITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHSH 147
Query: 161 DEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGG----VCIDLSLMKSVKALHIEDMD 216
+EV ++V+ K+ V IIP GG ++I G + P V ID+ M V + +M
Sbjct: 148 EEVERLVQLAHKYNVVIIPMGGGSNIVG-AIEPVSNERFTVSIDMRRMNKVLWVDRREMT 206
Query: 217 VVVEPGIGWMELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSLAVRYGTMRDNVIN 274
++ GI EL + L G+ DP +T+GG AT SG + +YG + D ++
Sbjct: 207 ACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQSDKYGDIEDMAVS 266
Query: 275 LKVVLANGDV-VKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATC 333
+ V G + ++ +R S AG + +I+GSEGTLGIITE +++ +PQ
Sbjct: 267 FRTVTPTGTLELRNGAR---SGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGF 323
Query: 334 NFPTIKDAADVAIATMLSGIQVSRVELLD--EVQVRAVNIANGKNLPELPTLM----FEF 387
FPT A S + + + + D E Q+ + + E + M +
Sbjct: 324 LFPTFAHAVSALQQIRSSEVIPTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHY 383
Query: 388 IGTQAYSHEQTLIV-----QKIVSEHNGTDF-IFAEDP-----EAKKELWKMRKEALWAC 436
I + + + I+ +K+V H + F I +++ A + W ++ L
Sbjct: 384 IRSFDFKNVCLSIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYI 443
Query: 437 --FAMEPSFEAMISDVCVPLSCLAELISRSK-------KELDASPLICTVIAHAGDGNFH 487
F ++ + +++ V + L L +K K+ IC I+H
Sbjct: 444 RDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTFVKHFKDQGIPAWICAHISHTYTNGVC 503
Query: 488 TVILFDPSKEEDRQEAERL--NRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALE 545
+F + E++ A+ + + M G+ + HG+G + ++ + G +
Sbjct: 504 LYFIFASKQNENKDMAQYIEAKKLMTDIIFKYGGSLSHHHGVGYEHVPWMTRYATRGWIN 563
Query: 546 TMKRIKVALDPNNIMNPGKLI 566
+ +K +DP +I NP KLI
Sbjct: 564 VYRSLKETIDPKDICNPRKLI 584
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 116/474 (24%), Positives = 193/474 (40%), Gaps = 77/474 (16%)
Query: 150 IPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGG----VCIDLSLMK 205
IPDI+++P D+V KIV K+ + IIP GG TS+ + P + +D S M
Sbjct: 205 IPDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMN 264
Query: 206 SVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSLAV 263
+ + ++ VE GI EL L+ G +P +T+GG +TR SG
Sbjct: 265 RILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKN 324
Query: 264 RYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQK 323
YG + D V+++KVV G V++ + + + + G D+ I+GSEGTLG+ITE T++++
Sbjct: 325 IYGNIEDLVVHMKVVTPRG-VIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP 383
Query: 324 IPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQ------------------ 365
P++ + FP + + + L+D Q
Sbjct: 384 TPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIHLMDNQQFQFGHALKPQVSSIFTSF 443
Query: 366 ---VRAVNIANGK----NLPELPTLMFEFIGTQAYSHEQTLIVQKIVSEHNGTDFIFAED 418
++ I K N + TL+FE + HE+ V I ++ G ED
Sbjct: 444 LDGLKKFYITKFKGFDPNQLSVATLLFEGDREKVLQHEKQ--VYDIAAKFGG--LAAGED 499
Query: 419 PEAKKELWK-----MRKEALWACFAMEPSFEA-----MISDVCVPLSCLAELISRSKKE- 467
+ L MR L + + SFE + D+C + E I R KE
Sbjct: 500 NGQRGYLLTYVIAYMRDLGL-EYYIIGESFETSAPWDRVVDLC---RNVKERIRRECKEK 555
Query: 468 ---------------LDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVH 512
DA I A G + +F+ ++ R+E
Sbjct: 556 GVQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISDPLAVFEQTEAAAREE---------- 605
Query: 513 TALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLI 566
L+ G+ + HG+G + ++L++ + +K +K +DP NI L+
Sbjct: 606 -ILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIFGNRNLL 658
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 116/474 (24%), Positives = 193/474 (40%), Gaps = 77/474 (16%)
Query: 150 IPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGG----VCIDLSLMK 205
IPDI+++P D+V KIV K+ + IIP GG TS+ + P + +D S M
Sbjct: 205 IPDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMN 264
Query: 206 SVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSLAV 263
+ + ++ VE GI EL L+ G +P +T+GG +TR SG
Sbjct: 265 RILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKN 324
Query: 264 RYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQK 323
YG + D V+++KVV G V++ + + + + G D+ I+GSEGTLG+ITE T++++
Sbjct: 325 IYGNIEDLVVHMKVVTPRG-VIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP 383
Query: 324 IPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQ------------------ 365
P++ + FP + + + L+D Q
Sbjct: 384 TPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNQQFQFGHALKPQVSSIFTSF 443
Query: 366 ---VRAVNIANGK----NLPELPTLMFEFIGTQAYSHEQTLIVQKIVSEHNGTDFIFAED 418
++ I K N + TL+FE + HE+ V I ++ G ED
Sbjct: 444 LDGLKKFYITKFKGFDPNQLSVATLLFEGDREKVLQHEKQ--VYDIAAKFGG--LAAGED 499
Query: 419 PEAKKELWK-----MRKEALWACFAMEPSFEA-----MISDVCVPLSCLAELISRSKKE- 467
+ L MR L + + SFE + D+C + E I R KE
Sbjct: 500 NGQRGYLLTYVIAYMRDLGL-EYYIIGESFETSAPWDRVVDLC---RNVKERIRRECKEK 555
Query: 468 ---------------LDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVH 512
DA I A G + +F+ ++ R+E
Sbjct: 556 GVQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISDPLAVFEQTEAAAREE---------- 605
Query: 513 TALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLI 566
L+ G+ + HG+G + ++L++ + +K +K +DP NI L+
Sbjct: 606 -ILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIFGNRNLL 658
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 116/474 (24%), Positives = 193/474 (40%), Gaps = 77/474 (16%)
Query: 150 IPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGG----VCIDLSLMK 205
IPDI+++P D+V KIV K+ + IIP GG TS+ + P + +D S M
Sbjct: 205 IPDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMN 264
Query: 206 SVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSLAV 263
+ + ++ VE GI EL L+ G +P +T+GG +TR SG
Sbjct: 265 RILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKN 324
Query: 264 RYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQK 323
YG + D V+++KVV G V++ + + + + G D+ I+GSEGTLG+ITE T++++
Sbjct: 325 IYGNIEDLVVHMKVVTPRG-VIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP 383
Query: 324 IPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQ------------------ 365
P++ + FP + + + L+D Q
Sbjct: 384 TPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNQQFQFGHALKPQVSSIFTSF 443
Query: 366 ---VRAVNIANGK----NLPELPTLMFEFIGTQAYSHEQTLIVQKIVSEHNGTDFIFAED 418
++ I K N + TL+FE + HE+ V I ++ G ED
Sbjct: 444 LDGLKKFYITKFKGFDPNQLSVATLLFEGDREKVLQHEKQ--VYDIAAKFGG--LAAGED 499
Query: 419 PEAKKELWK-----MRKEALWACFAMEPSFEA-----MISDVCVPLSCLAELISRSKKE- 467
+ L MR L + + SFE + D+C + E I R KE
Sbjct: 500 NGQRGYLLTYVIAYMRDLGL-EYYIIGESFETSAPWDRVVDLC---RNVKERIRRECKEK 555
Query: 468 ---------------LDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVH 512
DA I A G + +F+ ++ R+E
Sbjct: 556 GVQFPPLSTCRVTQTYDAGACIFFYFAFNYRGISDPLAVFEQTEAAAREE---------- 605
Query: 513 TALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLI 566
L+ G+ + HG+G + ++L++ + +K +K +DP NI L+
Sbjct: 606 -ILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIFGNRNLL 658
>pdb|1WVE|A Chain A, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVE|B Chain B, P-Cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
pdb|1WVF|A Chain A, P-cresol Methylhydroxylase: Alteration Of The Structure Of
The Flavoprotein Subunit Upon Its Binding To The
Cytochrome Subunit
Length = 520
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 23/227 (10%)
Query: 116 VDELKAICQDDMTMDYEERYI-HGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHK 174
V + +A+ DD + ++ + + K A + P V + ++V +VK C++HK
Sbjct: 21 VQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHK 80
Query: 175 VPI--------IPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWM 226
+PI YG A ++ G V +DL M + + E +VEPG+ +
Sbjct: 81 IPIWTISTGRNFGYGSAAPVQ------RGQVILDLKKMNKIIKIDPEMCYALVEPGVTFG 134
Query: 227 ELNEYLEPYGLFFPLD-PGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVV 285
++ +Y++ L L P A G + T G YG ++VVLANGDV
Sbjct: 135 QMYDYIQENNLPVMLSFSAPSAIAGPVGNTMDRGVGYTPYGEHFMMQCGMEVVLANGDVY 194
Query: 286 KTASRARKSAAGYDLTRLIIG-------SEGTLGIITEVTLRLQKIP 325
+T + + + + G ++ GI T++ L P
Sbjct: 195 RTGMGGVPGSNTWQIFKWGYGPTLDGMFTQANYGICTKMGFWLMPKP 241
>pdb|1DII|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DII|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase At 2.5 A
Resolution
pdb|1DIQ|A Chain A, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
pdb|1DIQ|B Chain B, Crystal Structure Of P-Cresol Methylhydroxylase With
Substrate Bound
Length = 521
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 23/227 (10%)
Query: 116 VDELKAICQDDMTMDYEERYI-HGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHK 174
V + +A+ DD + ++ + + K A + P V + ++V +VK C++HK
Sbjct: 22 VQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHK 81
Query: 175 VPI--------IPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWM 226
+PI YG A ++ G V +DL M + + E +VEPG+ +
Sbjct: 82 IPIWTISTGRNFGYGSAAPVQ------RGQVILDLKKMNKIIKIDPEMCYALVEPGVTFG 135
Query: 227 ELNEYLEPYGLFFPLD-PGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVV 285
++ +Y++ L L P A G + T G YG ++VVLANGDV
Sbjct: 136 QMYDYIQENNLPVMLSFSAPSAIAGPVGNTMDRGVGYTPYGEHFMMQCGMEVVLANGDVY 195
Query: 286 KTASRARKSAAGYDLTRLIIG-------SEGTLGIITEVTLRLQKIP 325
+T + + + + G ++ GI T++ L P
Sbjct: 196 RTGMGGVPGSNTWQIFKWGYGPTLDGMFTQANYGICTKMGFWLMPKP 242
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 97/217 (44%), Gaps = 21/217 (9%)
Query: 151 PDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKAL 210
P +I S +V+K V+ + + I G + G+ + +GG+ +DL LM S+
Sbjct: 39 PSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYATN-DGGIVLDLRLMNSI--- 94
Query: 211 HIEDMDVVVEPGIGWM--ELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTM 268
HI+ G G + +L + +GL P G+ G L +YG
Sbjct: 95 HIDTAGSRARIGGGVISGDLVKEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKYGLA 154
Query: 269 RDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHS 328
DN++ +V A GDV+ + R +L + G+ G++TEV ++L ++P+
Sbjct: 155 SDNILGATLVTATGDVIYCSDDERP-----ELFWAVRGAGPNFGVVTEVEVQLYELPRKM 209
Query: 329 VVATCNF-PTIKDAADVAIATMLSGIQVSRVELLDEV 364
+ + P++ + L+G+ S ++ L+E+
Sbjct: 210 LAGFITWAPSVSE---------LAGLLTSLLDALNEM 237
>pdb|1W1K|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Ile238thr Mutant
pdb|1W1K|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Ile238thr Mutant
Length = 560
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 105/257 (40%), Gaps = 38/257 (14%)
Query: 154 IVFPRSEDEVSKIVKCCDKHKVPIIPY--GGATSIEGHTLSPNGGVCIDLSL-MKSVKAL 210
IV PR+ +V IV +K P+ P G + G +G V +D+ M V +
Sbjct: 74 IVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEV 133
Query: 211 HIEDMDVVVEPGIGWMELNEYLEPYGLFFPL-----DPGPGATIGGMCATRCSGSLAVRY 265
++E VVEPG+ + +L+ YLE L L D G G+ +G G Y
Sbjct: 134 NVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVE---RGVGYTPY 190
Query: 266 GTMRDNVINLKVVLANGDVVKTASRA-----RKSAAG----------------YDLTRLI 304
G ++VVLANG++++T A R G Y I
Sbjct: 191 GDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKTAHLFPYGFGPYI 250
Query: 305 IG--SEGTLGIITEVTLRLQKIPQHSVVATCNFPT---IKDAADVAIATMLSGIQVSRVE 359
G S+ +GI+T++ + L P+ P +K A D+ I + G+ + V
Sbjct: 251 DGLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDI-IRPLRLGMALQNVP 309
Query: 360 LLDEVQVRAVNIANGKN 376
+ + + A + + ++
Sbjct: 310 TIRHILLDAAVLGDKRS 326
>pdb|1W1M|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase: Glu502gly Mutant
pdb|1W1M|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase: Glu502gly Mutant
Length = 560
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 105/257 (40%), Gaps = 38/257 (14%)
Query: 154 IVFPRSEDEVSKIVKCCDKHKVPIIPY--GGATSIEGHTLSPNGGVCIDLSL-MKSVKAL 210
IV PR+ +V IV +K P+ P G + G +G V +D+ M V +
Sbjct: 74 IVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEV 133
Query: 211 HIEDMDVVVEPGIGWMELNEYLEPYGLFFPL-----DPGPGATIGGMCATRCSGSLAVRY 265
++E VVEPG+ + +L+ YLE L L D G G+ +G G Y
Sbjct: 134 NVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVE---RGVGYTPY 190
Query: 266 GTMRDNVINLKVVLANGDVVKTASRA-----RKSAAG----------------YDLTRLI 304
G ++VVLANG++++T A R G Y I
Sbjct: 191 GDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYI 250
Query: 305 IG--SEGTLGIITEVTLRLQKIPQHSVVATCNFPT---IKDAADVAIATMLSGIQVSRVE 359
G S+ +GI+T++ + L P+ P +K A D+ I + G+ + V
Sbjct: 251 DGLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDI-IRPLRLGMALQNVP 309
Query: 360 LLDEVQVRAVNIANGKN 376
+ + + A + + ++
Sbjct: 310 TIRHILLDAAVLGDKRS 326
>pdb|1W1L|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Phe454tyr Mutant
pdb|1W1L|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Phe454tyr Mutant
Length = 560
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 105/257 (40%), Gaps = 38/257 (14%)
Query: 154 IVFPRSEDEVSKIVKCCDKHKVPIIPY--GGATSIEGHTLSPNGGVCIDLSL-MKSVKAL 210
IV PR+ +V IV +K P+ P G + G +G V +D+ M V +
Sbjct: 74 IVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEV 133
Query: 211 HIEDMDVVVEPGIGWMELNEYLEPYGLFFPL-----DPGPGATIGGMCATRCSGSLAVRY 265
++E VVEPG+ + +L+ YLE L L D G G+ +G G Y
Sbjct: 134 NVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVE---RGVGYTPY 190
Query: 266 GTMRDNVINLKVVLANGDVVKTASRA-----RKSAAG----------------YDLTRLI 304
G ++VVLANG++++T A R G Y I
Sbjct: 191 GDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYI 250
Query: 305 IG--SEGTLGIITEVTLRLQKIPQHSVVATCNFPT---IKDAADVAIATMLSGIQVSRVE 359
G S+ +GI+T++ + L P+ P +K A D+ I + G+ + V
Sbjct: 251 DGLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDI-IRPLRLGMALQNVP 309
Query: 360 LLDEVQVRAVNIANGKN 376
+ + + A + + ++
Sbjct: 310 TIRHILLDAAVLGDKRS 326
>pdb|2VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|2VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|1VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase
pdb|1VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase
pdb|1AHU|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHU|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHV|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHV|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHZ|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
pdb|1AHZ|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
Length = 560
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 105/257 (40%), Gaps = 38/257 (14%)
Query: 154 IVFPRSEDEVSKIVKCCDKHKVPIIPY--GGATSIEGHTLSPNGGVCIDLSL-MKSVKAL 210
IV PR+ +V IV +K P+ P G + G +G V +D+ M V +
Sbjct: 74 IVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEV 133
Query: 211 HIEDMDVVVEPGIGWMELNEYLEPYGLFFPL-----DPGPGATIGGMCATRCSGSLAVRY 265
++E VVEPG+ + +L+ YLE L L D G G+ +G G Y
Sbjct: 134 NVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVE---RGVGYTPY 190
Query: 266 GTMRDNVINLKVVLANGDVVKTASRA-----RKSAAG----------------YDLTRLI 304
G ++VVLANG++++T A R G Y I
Sbjct: 191 GDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYI 250
Query: 305 IG--SEGTLGIITEVTLRLQKIPQHSVVATCNFPT---IKDAADVAIATMLSGIQVSRVE 359
G S+ +GI+T++ + L P+ P +K A D+ I + G+ + V
Sbjct: 251 DGLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDI-IRPLRLGMALQNVP 309
Query: 360 LLDEVQVRAVNIANGKN 376
+ + + A + + ++
Sbjct: 310 TIRHILLDAAVLGDKRS 326
>pdb|1W1J|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
pdb|1W1J|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
Length = 560
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 105/257 (40%), Gaps = 38/257 (14%)
Query: 154 IVFPRSEDEVSKIVKCCDKHKVPIIPY--GGATSIEGHTLSPNGGVCIDLSL-MKSVKAL 210
IV PR+ +V IV +K P+ P G + G +G V +D+ M V +
Sbjct: 74 IVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEV 133
Query: 211 HIEDMDVVVEPGIGWMELNEYLEPYGLFFPL-----DPGPGATIGGMCATRCSGSLAVRY 265
++E VVEPG+ + +L+ YLE L L D G G+ +G G Y
Sbjct: 134 NVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVE---RGVGYTPY 190
Query: 266 GTMRDNVINLKVVLANGDVVKTASRA-----RKSAAG----------------YDLTRLI 304
G ++VVLANG++++T A R G Y I
Sbjct: 191 GDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYI 250
Query: 305 IG--SEGTLGIITEVTLRLQKIPQHSVVATCNFPT---IKDAADVAIATMLSGIQVSRVE 359
G S+ +GI+T++ + L P+ P +K A D+ I + G+ + V
Sbjct: 251 DGLFSQSNMGIVTKIGIWLMPNPRGYQSYLITLPKDGDLKQAVDI-IRPLRLGMALQNVP 309
Query: 360 LLDEVQVRAVNIANGKN 376
+ + + A + + ++
Sbjct: 310 TIRHILLDAAVLGDKRS 326
>pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLT|B Chain B, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLU|A Chain A, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
pdb|1QLU|B Chain B, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
Length = 560
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 106/257 (41%), Gaps = 38/257 (14%)
Query: 154 IVFPRSEDEVSKIVKCCDKHKVPIIPY--GGATSIEGHTLSPNGGVCIDLSL-MKSVKAL 210
IV PR+ +V IV +K P+ P G + G +G V +D+ M V +
Sbjct: 74 IVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEV 133
Query: 211 HIEDMDVVVEPGIGWMELNEYLEPYGLFFPL-----DPGPGATIGGMCATRCSGSLAVRY 265
++E VVEPG+ + +L+ YLE L L D G G+ +G G Y
Sbjct: 134 NVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVE---RGVGYTPY 190
Query: 266 GTMRDNVINLKVVLANGDVVKTASRA-----RKSAAG----------------YDLTRLI 304
G ++VVLANG++++T A R G Y I
Sbjct: 191 GDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYI 250
Query: 305 IG--SEGTLGIITEVTLRLQKIP---QHSVVATCNFPTIKDAADVAIATMLSGIQVSRVE 359
G S+ +GI+T++ + L P Q ++ +K A D+ I + G+ + V
Sbjct: 251 DGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDI-IRPLRLGMALQNVP 309
Query: 360 LLDEVQVRAVNIANGKN 376
+ + + A + + ++
Sbjct: 310 TIRHILLDAAVLGDKRS 326
>pdb|1E8F|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8F|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8G|A Chain A, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8G|B Chain B, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8H|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-
Alcohol Oxidase In The Apo Form Complexed By Adp
pdb|1E8H|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-
Alcohol Oxidase In The Apo Form Complexed By Adp
Length = 560
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 106/257 (41%), Gaps = 38/257 (14%)
Query: 154 IVFPRSEDEVSKIVKCCDKHKVPIIPY--GGATSIEGHTLSPNGGVCIDLSL-MKSVKAL 210
IV PR+ +V IV +K P+ P G + G +G V +D+ M V +
Sbjct: 74 IVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEV 133
Query: 211 HIEDMDVVVEPGIGWMELNEYLEPYGLFFPL-----DPGPGATIGGMCATRCSGSLAVRY 265
++E VVEPG+ + +L+ YLE L L D G G+ +G G Y
Sbjct: 134 NVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVE---RGVGYTPY 190
Query: 266 GTMRDNVINLKVVLANGDVVKTASRA-----RKSAAG----------------YDLTRLI 304
G ++VVLANG++++T A R G Y I
Sbjct: 191 GDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYI 250
Query: 305 IG--SEGTLGIITEVTLRLQKIP---QHSVVATCNFPTIKDAADVAIATMLSGIQVSRVE 359
G S+ +GI+T++ + L P Q ++ +K A D+ I + G+ + V
Sbjct: 251 DGLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDI-IRPLRLGMALQNVP 309
Query: 360 LLDEVQVRAVNIANGKN 376
+ + + A + + ++
Sbjct: 310 TIRHILLDAAVLGDKRS 326
>pdb|1DZN|A Chain A, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
pdb|1DZN|B Chain B, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
Length = 560
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 106/256 (41%), Gaps = 36/256 (14%)
Query: 154 IVFPRSEDEVSKIVKCCDKHKVPIIPY--GGATSIEGHTLSPNGGVCIDLSL-MKSVKAL 210
IV PR+ +V IV +K P+ P G + G +G V +D+ M V +
Sbjct: 74 IVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEV 133
Query: 211 HIEDMDVVVEPGIGWMELNEYLEPYG----LFFPLDPGPGATIGGMCATRCSGSLAVRYG 266
++E VVEPG+ + +L+ YLE L+ + G ++ G R G YG
Sbjct: 134 NVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPSLGGGSVLGNAVERGVGYTP--YG 191
Query: 267 TMRDNVINLKVVLANGDVVKTASRA-----RKSAAG----------------YDLTRLII 305
++VVLANG++++T A R G Y I
Sbjct: 192 DHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYID 251
Query: 306 G--SEGTLGIITEVTLRLQKIP---QHSVVATCNFPTIKDAADVAIATMLSGIQVSRVEL 360
G S+ +GI+T++ + L P Q ++ +K A D+ I + G+ + V
Sbjct: 252 GLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDI-IRPLRLGMALQNVPT 310
Query: 361 LDEVQVRAVNIANGKN 376
+ + + A + + ++
Sbjct: 311 IRHILLDAAVLGDKRS 326
>pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL-
Alcohol Oxidase
pdb|1E0Y|B Chain B, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL-
Alcohol Oxidase
Length = 560
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 106/256 (41%), Gaps = 36/256 (14%)
Query: 154 IVFPRSEDEVSKIVKCCDKHKVPIIPY--GGATSIEGHTLSPNGGVCIDLSL-MKSVKAL 210
IV PR+ +V IV +K P+ P G + G +G V +D+ M V +
Sbjct: 74 IVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGSVVLDMGKNMNRVLEV 133
Query: 211 HIEDMDVVVEPGIGWMELNEYLEPYG----LFFPLDPGPGATIGGMCATRCSGSLAVRYG 266
++E VVEPG+ + +L+ YLE L+ + G ++ G R G YG
Sbjct: 134 NVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPSLGGGSVLGNAVERGVGYTP--YG 191
Query: 267 TMRDNVINLKVVLANGDVVKTASRA-----RKSAAG----------------YDLTRLII 305
++VVLANG++++T A R G Y I
Sbjct: 192 DHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYID 251
Query: 306 G--SEGTLGIITEVTLRLQKIP---QHSVVATCNFPTIKDAADVAIATMLSGIQVSRVEL 360
G S+ +GI+T++ + L P Q ++ +K A D+ I + G+ + V
Sbjct: 252 GLFSQSNMGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDI-IRPLRLGMALQNVPT 310
Query: 361 LDEVQVRAVNIANGKN 376
+ + + A + + ++
Sbjct: 311 IRHILLDAAVLGDKRS 326
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 76/190 (40%), Gaps = 27/190 (14%)
Query: 151 PDIIVFPRSEDEVSKIVKCCDKH-KVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKS--- 206
P +V P ++++ VK + K+ + G SI G + GG+ +D S
Sbjct: 62 PLAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGHSINGQAXA-EGGLVVDXSTTAENHF 120
Query: 207 -VKALHIEDMDVVVEPGIG--WME-LNEYLEPYGLFFPLDPGP-------GATIGGMCAT 255
V L D V+ G W + L + YGL P G T+GG +
Sbjct: 121 EVGYLSGGDATAFVDVSGGALWEDVLKRCVSEYGL------APRSWTDYLGLTVGGTLSN 174
Query: 256 RCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIIT 315
A RYG NV L VV NGDVV T S S +L ++G G GIIT
Sbjct: 175 AGVSGQAFRYGPQTSNVTELDVVTGNGDVV-TCSEIENS----ELFFSVLGGLGQFGIIT 229
Query: 316 EVTLRLQKIP 325
+ LQ P
Sbjct: 230 RARVLLQPAP 239
>pdb|2YVS|A Chain A, Crystal Structure Of Glycolate Oxidase Subunit Glce From
Thermus Thermophilus Hb8
pdb|2YVS|B Chain B, Crystal Structure Of Glycolate Oxidase Subunit Glce From
Thermus Thermophilus Hb8
Length = 219
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 210 LHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPG--PGATIGGMCATRCSGSLAVRYGT 267
+H D +V +E++ L GLF P P PG +GG+ A G A +
Sbjct: 3 VHAADQYLVAPGEADLLEVHARLAGTGLFPPFPPVELPGG-VGGLVA---RGGFAQTF-F 57
Query: 268 MRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQ 322
V+ L G V+ K+ GYDL RL +GS G LG EV LRL+
Sbjct: 58 FPAEVLGLTFRTPKGRRVRAGGVVVKNVQGYDLVRLFVGSFGLLGRAEEVVLRLR 112
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 110/260 (42%), Gaps = 18/260 (6%)
Query: 134 RYIHGKPQNSFHK--AVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191
R++H QN + ++ P I+ P S++E+S ++C K I G S EG +
Sbjct: 27 RFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSY 86
Query: 192 SPNG-GVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYG--LFFPLDPGPGAT 248
+ + + IDL + V ++ +E VE G EL + L F P
Sbjct: 87 TSDTPFILIDLMNLNRV-SIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVG 145
Query: 249 IGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLI-IGS 307
GG + G ++ +YG DNV++ ++ ANG ++ + A G D+ I G
Sbjct: 146 TGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILD------RQAMGEDVFWAIRGGG 199
Query: 308 EGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVR 367
G G I ++L +P+ V F K+ A ++L Q EL ++ +
Sbjct: 200 GGVWGAIYAWKIKLLPVPEKVTV----FRVTKNVAIDEATSLLHKWQFVAEELEEDFTLS 255
Query: 368 AVNIANGKNLPELPTLMFEF 387
+ A+ K + L L F F
Sbjct: 256 VLGGADEKQV-WLTMLGFHF 274
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 110/260 (42%), Gaps = 18/260 (6%)
Query: 134 RYIHGKPQNSFHK--AVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191
R++H QN + ++ P I+ P S++E+S ++C K I G S EG +
Sbjct: 27 RFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSY 86
Query: 192 SPNG-GVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYG--LFFPLDPGPGAT 248
+ + + IDL + V ++ +E VE G EL + L F P
Sbjct: 87 TSDTPFILIDLMNLNRV-SIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWAPTVG 145
Query: 249 IGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLI-IGS 307
GG + G ++ +YG DNV++ ++ ANG ++ + A G D+ I G
Sbjct: 146 TGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILD------RQAMGEDVFWAIRGGG 199
Query: 308 EGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVR 367
G G I ++L +P+ V F K+ A ++L Q EL ++ +
Sbjct: 200 GGVWGAIYAWKIKLLPVPEKVTV----FRVTKNVAIDEATSLLHKWQFVAEELEEDFTLS 255
Query: 368 AVNIANGKNLPELPTLMFEF 387
+ A+ K + L L F F
Sbjct: 256 VLGGADEKQV-WLTMLGFHF 274
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form
pdb|4G3U|A Chain A, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
pdb|4G3U|B Chain B, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
Length = 403
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Query: 195 GGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP-GATIGGMC 253
GG+ ID+ + + ++ V V+ G+ +L + P+GL+ P+ PG T+GG
Sbjct: 10 GGLVIDMPALNRIHSIDSGTRLVDVDAGVSLDQLMKAALPHGLWVPVLPGTRQVTVGGAI 69
Query: 254 ATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGI 313
G G+ ++V +++++ ANG+V S DL +G G GI
Sbjct: 70 GCDIHGKNHHSAGSFGNHVRSMELLTANGEVRHLTPAGPDS----DLFWATVGGNGLTGI 125
Query: 314 ITEVTLRL 321
I T+ +
Sbjct: 126 ILRATIEM 133
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 110/268 (41%), Gaps = 34/268 (12%)
Query: 134 RYIHGKPQNSFHK--AVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191
R++H QN + ++ P I+ P S++E+S ++C K I G S EG +
Sbjct: 30 RFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGASYEGLSY 89
Query: 192 SPNG-GVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYL-EPYGLFFPLDPGPGATI 249
+ + + IDL +++ + + +E W+E L E Y G T
Sbjct: 90 TSDTPFILIDL--------MNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFT- 140
Query: 250 GGMCAT---------RCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDL 300
G C T G ++ +YG DNV++ ++ ANG ++ + A G D+
Sbjct: 141 AGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILD------RQAMGEDV 194
Query: 301 TRLI-IGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVE 359
I G G G I ++L +P+ V F K+ A ++L Q E
Sbjct: 195 FWAIRGGGGGVWGAIYAWKIKLLPVPEKVTV----FRVTKNVAIDEATSLLHKWQFVAEE 250
Query: 360 LLDEVQVRAVNIANGKNLPELPTLMFEF 387
L ++ + + A+ K + L L F F
Sbjct: 251 LEEDFTLSVLGGADEKQV-WLTMLGFHF 277
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target
Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2-
Oxidoreductase (Dpre1) From Mycobacterium Smegmatis
pdb|4F4Q|A Chain A, Crystal Structure Of M. Smegmatis Dpre1 In Complex With
Fad And Covalently Bound Btz043
Length = 468
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 6/160 (3%)
Query: 163 VSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPG 222
V + + ++ +I G S G GG+ ID+ + + ++ V V+ G
Sbjct: 44 VRAVTRAAEEGGRGVIARGLGRSY-GDNAQNGGGLVIDMPALNRIHSIDSGTRLVDVDAG 102
Query: 223 IGWMELNEYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLAN 281
+ +L + P+GL+ P+ PG T+GG G G+ ++V +++++ AN
Sbjct: 103 VSLDQLMKAALPHGLWVPVLPGTRQVTVGGAIGCDIHGKNHHSAGSFGNHVRSMELLTAN 162
Query: 282 GDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRL 321
G+V S DL +G G GII T+ +
Sbjct: 163 GEVRHLTPAGPDS----DLFWATVGGNGLTGIILRATIEM 198
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 79/187 (42%), Gaps = 11/187 (5%)
Query: 151 PDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHT-LSPNGGVCIDLSLMKSVKA 209
P +IV P + + + C K + I G EG + +S V +DL M S+K
Sbjct: 54 PLVIVTPSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIK- 112
Query: 210 LHIEDMDVVVEPGIGWMELNEYLEPYG--LFFPLDPGPGATIGGMCATRCSGSLAVRYGT 267
+ + VE G E+ ++ L FP P +GG + G+L YG
Sbjct: 113 IDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGL 172
Query: 268 MRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEG-TLGIITEVTLRLQKIPQ 326
DN+I+ +V +G V+ RKS G DL I G G GII ++L +P
Sbjct: 173 AADNIIDAHLVNVDGKVLD-----RKS-MGEDLFWAIRGGGGENFGIIAAWKIKLVAVPS 226
Query: 327 HSVVATC 333
S + +
Sbjct: 227 KSTIFSV 233
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 110/268 (41%), Gaps = 34/268 (12%)
Query: 134 RYIHGKPQNSFHK--AVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191
R++H QN + ++ P I+ P S++E+S ++C K I G S EG +
Sbjct: 27 RFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSY 86
Query: 192 SPNG-GVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYL-EPYGLFFPLDPGPGATI 249
+ + + IDL +++ + + +E W+E L E Y G T
Sbjct: 87 TSDTPFILIDL--------MNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFT- 137
Query: 250 GGMCAT---------RCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDL 300
G C T G ++ +YG DNV++ ++ ANG ++ + A G D+
Sbjct: 138 AGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILD------RQAMGEDV 191
Query: 301 TRLI-IGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVE 359
I G G G I ++L +P+ V F K+ A ++L Q E
Sbjct: 192 FWAIRGGGGGVWGAIYAWKIKLLPVPEKVTV----FRVTKNVAIDEATSLLHKWQFVAEE 247
Query: 360 LLDEVQVRAVNIANGKNLPELPTLMFEF 387
L ++ + + A+ K + L L F F
Sbjct: 248 LEEDFTLSVLGGADEKQV-WLTMLGFHF 274
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 110/268 (41%), Gaps = 34/268 (12%)
Query: 134 RYIHGKPQNSFHK--AVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191
R++H QN + ++ P I+ P S++E+S ++C K I G S EG +
Sbjct: 52 RFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSY 111
Query: 192 SPNG-GVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYL-EPYGLFFPLDPGPGATI 249
+ + + IDL +++ + + +E W+E L E Y G T
Sbjct: 112 TSDTPFILIDL--------MNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFT- 162
Query: 250 GGMCAT---------RCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDL 300
G C T G ++ +YG DNV++ ++ ANG ++ + A G D+
Sbjct: 163 AGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILD------RQAMGEDV 216
Query: 301 TRLI-IGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVE 359
I G G G I ++L +P+ V F K+ A ++L Q E
Sbjct: 217 FWAIRGGGGGVWGAIYAWKIKLLPVPEKVTV----FRVTKNVAIDEATSLLHKWQFVAEE 272
Query: 360 LLDEVQVRAVNIANGKNLPELPTLMFEF 387
L ++ + + A+ K + L L F F
Sbjct: 273 LEEDFTLSVLGGADEKQV-WLTMLGFHF 299
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 110/268 (41%), Gaps = 34/268 (12%)
Query: 134 RYIHGKPQNSFHK--AVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191
R++H QN + ++ P I+ P S++E+S ++C K I G S EG +
Sbjct: 33 RFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSY 92
Query: 192 SPNG-GVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYL-EPYGLFFPLDPGPGATI 249
+ + + IDL +++ + + +E W+E L E Y G T
Sbjct: 93 TSDTPFILIDL--------MNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFT- 143
Query: 250 GGMCAT---------RCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDL 300
G C T G ++ +YG DNV++ ++ ANG ++ + A G D+
Sbjct: 144 AGWCPTVGTGGAISGGGFGMMSRKYGLAADNVVDAILIDANGAILD------RQAMGEDV 197
Query: 301 TRLI-IGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVE 359
I G G G I ++L +P+ V F K+ A ++L Q E
Sbjct: 198 FWAIRGGGGGVWGAIYAWKIKLLPVPEKVTV----FRVTKNVAIDEATSLLHKWQFVAEE 253
Query: 360 LLDEVQVRAVNIANGKNLPELPTLMFEF 387
L ++ + + A+ K + L L F F
Sbjct: 254 LEEDFTLSVLGGADEKQV-WLTMLGFHF 280
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 110/268 (41%), Gaps = 34/268 (12%)
Query: 134 RYIHGKPQNSFHK--AVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191
R++H QN + ++ P I+ P S++E+S ++C K I G S EG +
Sbjct: 33 RFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSY 92
Query: 192 SPNG-GVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYL-EPYGLFFPLDPGPGATI 249
+ + + IDL +++ + + +E W+E L E Y G T
Sbjct: 93 TSDTPFILIDL--------MNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFT- 143
Query: 250 GGMCAT---------RCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDL 300
G C T G ++ +YG DNV++ ++ ANG ++ + A G D+
Sbjct: 144 AGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILD------RQAMGEDV 197
Query: 301 TRLI-IGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVE 359
I G G G I ++L +P+ V F K+ A ++L Q E
Sbjct: 198 FWAIRGGGGGVWGAIYAWKIKLLPVPEKVTV----FRVTKNVAIDEATSLLHKWQFVAEE 253
Query: 360 LLDEVQVRAVNIANGKNLPELPTLMFEF 387
L ++ + + A+ K + L L F F
Sbjct: 254 LEEDFTLSVLGGADEKQV-WLTMLGFHF 280
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Hexagonal Crystal Form
pdb|4FDO|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct319
pdb|4FDP|A Chain A, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FDP|B Chain B, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FEH|A Chain A, Mycobacterium Tuberculosis Dpre1 - Hexagonal Crystal Form
pdb|4FF6|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
pdb|4FF6|B Chain B, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
Length = 481
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
Query: 194 NGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP-GATIGGM 252
GG+ ID++ + ++ ++ + V ++ G+ +L + P+GL+ P+ PG T+GG
Sbjct: 87 GGGLVIDMTPLNTIHSIDADTKLVDIDAGVNLDQLMKAALPFGLWVPVLPGTRQVTVGGA 146
Query: 253 CATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLG 312
A G G+ ++V ++ ++ A+G++ + +L +G G G
Sbjct: 147 IACDIHGKNHHSAGSFGNHVRSMDLLTADGEIRHLTPTGEDA----ELFWATVGGNGLTG 202
Query: 313 IITEVTLRL 321
II T+ +
Sbjct: 203 IIMRATIEM 211
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/203 (18%), Positives = 77/203 (37%), Gaps = 45/203 (22%)
Query: 150 IPDIIVFPRSEDEVSKIVKCCDKHKVPIIPY-----GGATSIEGHTLSPNGGVCIDLSLM 204
+P +++P S ++ ++ + P PY G S+ G +P GGV ++++ +
Sbjct: 50 LPAAVLYPSSTADLVALLSAANS--TPGWPYTIAFRGRGHSLMGQAFAP-GGVVVNMASL 106
Query: 205 KSVKA-------------------LHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP 245
A + I+ + + G+ EYL
Sbjct: 107 GDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTEYLY------------ 154
Query: 246 GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLII 305
T+GG + A R+G NV+ + V+ +G++V + + DL ++
Sbjct: 155 -LTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNA-----DLFDAVL 208
Query: 306 GSEGTLGIITEVTLRLQKIPQHS 328
G G G+IT + ++ P +
Sbjct: 209 GGLGQFGVITRARIAVEPAPARA 231
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 102/248 (41%), Gaps = 28/248 (11%)
Query: 151 PDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEG---HTLSPNGGVCIDLSLMKSV 207
P I+ P + V C +H V I G EG +L P +DL+ M++V
Sbjct: 53 PLYIITPTQVSHIQSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAV 112
Query: 208 KALHIEDMDVVVEPG--IGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRY 265
+ + V+ G +G + Y L FP P +GG A G L +Y
Sbjct: 113 -WVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKY 171
Query: 266 GTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEG-TLGIITEVTLRLQKI 324
G +NVI++K+V ANG + K + G D + G G + GI+ ++L +
Sbjct: 172 GIAAENVIDVKLVDANGKL------HDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPV 225
Query: 325 PQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLM 384
P + + + A D+ ++ QV +L ++ +R IA G P
Sbjct: 226 PPTVTIFKISKTVSEGAVDI-----INKWQVVAPQLPADLMIRI--IAQG------PKAT 272
Query: 385 FE--FIGT 390
FE ++GT
Sbjct: 273 FEAMYLGT 280
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase
pdb|1W1Q|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Isopentenyladenine
pdb|1W1R|A Chain A, Plant Cytokinin Dehydrogenase In Complex With Trans-zeatin
pdb|1W1S|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Benzylaminopurine
Length = 534
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/203 (18%), Positives = 77/203 (37%), Gaps = 45/203 (22%)
Query: 150 IPDIIVFPRSEDEVSKIVKCCDKHKVPIIPY-----GGATSIEGHTLSPNGGVCIDLSLM 204
+P +++P S ++ ++ + P PY G S+ G +P GGV ++++ +
Sbjct: 68 LPAAVLYPSSTGDLVALLSAANS--TPGWPYTIAFRGRGHSLMGQAFAP-GGVVVNMASL 124
Query: 205 KSVKA-------------------LHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP 245
A + I+ + + G+ +YL
Sbjct: 125 GDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLY------------ 172
Query: 246 GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLII 305
T+GG + A R+G NV+ + V+ +G++V + + DL ++
Sbjct: 173 -LTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNA-----DLFDAVL 226
Query: 306 GSEGTLGIITEVTLRLQKIPQHS 328
G G G+IT + ++ P +
Sbjct: 227 GGLGQFGVITRARIAVEPAPARA 249
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
pdb|3BW7|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-1
pdb|3C0P|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-8
pdb|3DQ0|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH
N6-(3-Methoxy- Phenyl)adenine
pdb|3S1C|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH N6-
Isopentenyladenosine
Length = 516
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/203 (18%), Positives = 77/203 (37%), Gaps = 45/203 (22%)
Query: 150 IPDIIVFPRSEDEVSKIVKCCDKHKVPIIPY-----GGATSIEGHTLSPNGGVCIDLSLM 204
+P +++P S ++ ++ + P PY G S+ G +P GGV ++++ +
Sbjct: 50 LPAAVLYPSSTADLVALLSAANS--TPGWPYTIAFRGRGHSLMGQAFAP-GGVVVNMASL 106
Query: 205 KSVKA-------------------LHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP 245
A + I+ + + G+ +YL
Sbjct: 107 GDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLY------------ 154
Query: 246 GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLII 305
T+GG + A R+G NV+ + V+ +G++V + + DL ++
Sbjct: 155 -LTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNA-----DLFDAVL 208
Query: 306 GSEGTLGIITEVTLRLQKIPQHS 328
G G G+IT + ++ P +
Sbjct: 209 GGLGQFGVITRARIAVEPAPARA 231
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Benzylurea Inhibitor Cpbu
pdb|3KJM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
Length = 516
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/203 (18%), Positives = 77/203 (37%), Gaps = 45/203 (22%)
Query: 150 IPDIIVFPRSEDEVSKIVKCCDKHKVPIIPY-----GGATSIEGHTLSPNGGVCIDLSLM 204
+P +++P S ++ ++ + P PY G S+ G +P GGV ++++ +
Sbjct: 50 LPAAVLYPSSTADLVALLSAANS--TPGWPYTIAFRGRGHSLMGQAFAP-GGVVVNMASL 106
Query: 205 KSVKA-------------------LHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP 245
A + I+ + + G+ +YL
Sbjct: 107 GDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLY------------ 154
Query: 246 GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLII 305
T+GG + A R+G NV+ + V+ +G++V + + DL ++
Sbjct: 155 -LTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNA-----DLFDAVL 208
Query: 306 GSEGTLGIITEVTLRLQKIPQHS 328
G G G+IT + ++ P +
Sbjct: 209 GGLGQFGVITRARIAVEPAPARA 231
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenosine
Length = 516
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/203 (18%), Positives = 77/203 (37%), Gaps = 45/203 (22%)
Query: 150 IPDIIVFPRSEDEVSKIVKCCDKHKVPIIPY-----GGATSIEGHTLSPNGGVCIDLSLM 204
+P +++P S ++ ++ + P PY G S+ G +P GGV ++++ +
Sbjct: 50 LPAAVLYPSSTADLVALLSAANS--TPGWPYTIAFRGRGHSLMGQAFAP-GGVVVNMASL 106
Query: 205 KSVKA-------------------LHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP 245
A + I+ + + G+ +YL
Sbjct: 107 GDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLY------------ 154
Query: 246 GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLII 305
T+GG + A R+G NV+ + V+ +G++V + + DL ++
Sbjct: 155 -LTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNA-----DLFDAVL 208
Query: 306 GSEGTLGIITEVTLRLQKIPQHS 328
G G G+IT + ++ P +
Sbjct: 209 GGLGQFGVITRARIAVEPAPARA 231
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/203 (18%), Positives = 77/203 (37%), Gaps = 45/203 (22%)
Query: 150 IPDIIVFPRSEDEVSKIVKCCDKHKVPIIPY-----GGATSIEGHTLSPNGGVCIDLSLM 204
+P +++P S ++ ++ + P PY G S+ G +P GGV ++++ +
Sbjct: 50 LPAAVLYPSSTADLVALLSAANS--TPGWPYTIAFRGRGHSLMGQAFAP-GGVVVNMASL 106
Query: 205 KSVKA-------------------LHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP 245
A + I+ + + G+ +YL
Sbjct: 107 GDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLY------------ 154
Query: 246 GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLII 305
T+GG + A R+G NV+ + V+ +G++V + + DL ++
Sbjct: 155 -LTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNA-----DLFDAVL 208
Query: 306 GSEGTLGIITEVTLRLQKIPQHS 328
G G G+IT + ++ P +
Sbjct: 209 GGLGQFGVITRARIAVEPAPARA 231
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 261 LAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEG-TLGIITEVTL 319
L +YGT DNVI+ KVV A G ++ + A G D I G G + GI+ +
Sbjct: 169 LLRKYGTAADNVIDAKVVDAQGRLLD------RKAMGEDHFWAIRGGGGESFGIVASWQV 222
Query: 320 RLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPE 379
+L +P V F K + AI +++ Q L D++ +R + + G
Sbjct: 223 KLLPVPPKVTV----FQVHKGIKEGAI-DLVTKWQTVAPALPDDLMIRIMAMGQGA---- 273
Query: 380 LPTLMFE--FIGT 390
MFE ++GT
Sbjct: 274 ----MFEALYLGT 282
>pdb|3TX1|A Chain A, X-Ray Crystal Structure Of Listeria Monocytogenes Egd-E
Udp-N- Acetylenolpyruvylglucosamine Reductase (Murb)
Length = 322
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 22/161 (13%)
Query: 143 SFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG--GVCID 200
++ K D+ V P++ +E ++V C ++K+P+ G +++ + G GV +
Sbjct: 47 TYTKTGGAADVFVMPKTIEEAQEVVAYCHQNKIPLTILGNGSNL---IIKDGGIRGVILH 103
Query: 201 LSLMKSVKALHIEDMDVVVEPGIGWME-----LNEYLEPYGLFFPLDPGPGATIGGMCAT 255
L L+++++ + +V G ++ LNE L GL F G +IGG
Sbjct: 104 LDLLQTIER---NNTQIVAMSGAKLIDTAKFALNESLS--GLEFAC--GIPGSIGGALHM 156
Query: 256 RCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAA 296
YG +V+ VL +K R+ AA
Sbjct: 157 NAGA-----YGGEISDVLEAATVLTQTGELKKLKRSELKAA 192
>pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
pdb|2YCB|B Chain B, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
Length = 636
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 480 HAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKEL 539
H GDG + V D E+ R NRF L ME T G + + + EKEL
Sbjct: 339 HIGDGQHNMVYTGDFKYEQSRLLEAAANRFPRIETLVMESTYGGHEDVQPSRNR-AEKEL 397
Query: 540 GTGALETMKR 549
T++R
Sbjct: 398 VKTIYSTLRR 407
>pdb|2VQP|A Chain A, Structure Of The Matrix Protein From Human Respiratory
Syncytial Virus
Length = 257
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 305 IGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVEL 360
+ S+ L + ++T++ P H ++A C F I + V I T L I V +L
Sbjct: 121 LKSKNMLTTVKDLTMKTLN-PTHDIIALCEFENIVTSKKVIIPTYLRSISVRNKDL 175
>pdb|2YKD|A Chain A, Structure Of The Matrix Protein From Human Respiratory
Syncytial Virus
Length = 257
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 305 IGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVEL 360
+ S+ L + ++T++ P H ++A C F I + V I T L I V +L
Sbjct: 121 LKSKNMLTTVKDLTMKTLN-PTHDIIALCEFENIVTSKKVIIPTYLRSISVRNKDL 175
>pdb|2KMV|A Chain A, Solution Structure Of The Nucleotide Binding Domain Of The
Human Menkes Protein In The Atp-Free Form
pdb|2KMX|A Chain A, Solution Structure Of The Nucleotide Binding Domain Of The
Human Menkes Protein In The Atp-Bound Form
Length = 185
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 507 NRFMVHTALSMEGTC--TGEHGIGTGKMKYLEKELGTGALET 546
NR H L++ GT EH +GT KY ++EL T L T
Sbjct: 20 NRISHHKILAIVGTAESNSEHPLGTAITKYCKQELDTETLGT 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,281,900
Number of Sequences: 62578
Number of extensions: 665123
Number of successful extensions: 1857
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1787
Number of HSP's gapped (non-prelim): 80
length of query: 572
length of database: 14,973,337
effective HSP length: 104
effective length of query: 468
effective length of database: 8,465,225
effective search space: 3961725300
effective search space used: 3961725300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)