Query 008252
Match_columns 572
No_of_seqs 294 out of 2311
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 21:26:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02805 D-lactate dehydrogena 100.0 1.1E-91 2.4E-96 768.4 57.8 555 10-572 1-555 (555)
2 PRK11230 glycolate oxidase sub 100.0 1.3E-73 2.7E-78 622.8 52.7 450 113-567 19-473 (499)
3 TIGR00387 glcD glycolate oxida 100.0 2.6E-70 5.7E-75 587.1 45.3 409 154-564 1-413 (413)
4 COG0277 GlcD FAD/FMN-containin 100.0 2.6E-59 5.6E-64 509.9 46.5 442 120-568 3-458 (459)
5 KOG1231 Proteins containing th 100.0 7.5E-62 1.6E-66 495.2 17.6 410 148-567 61-498 (505)
6 KOG1232 Proteins containing th 100.0 1.3E-58 2.8E-63 460.3 28.2 451 107-566 47-511 (511)
7 KOG1233 Alkyl-dihydroxyacetone 100.0 9E-46 2E-50 369.0 26.0 444 111-566 115-613 (613)
8 PRK11183 D-lactate dehydrogena 100.0 1.4E-44 2.9E-49 384.6 32.8 426 113-564 3-551 (564)
9 PLN02441 cytokinin dehydrogena 100.0 1.1E-42 2.3E-47 376.6 38.7 435 123-568 39-520 (525)
10 PRK11282 glcE glycolate oxidas 100.0 7.7E-44 1.7E-48 370.2 28.3 345 159-568 3-351 (352)
11 TIGR01676 GLDHase galactonolac 100.0 1.5E-35 3.3E-40 320.5 35.0 204 148-361 59-263 (541)
12 TIGR01678 FAD_lactone_ox sugar 100.0 3.5E-35 7.5E-40 315.7 32.5 385 148-561 12-436 (438)
13 TIGR01677 pln_FAD_oxido plant- 100.0 2.1E-34 4.6E-39 315.8 31.0 198 146-350 27-235 (557)
14 TIGR01679 bact_FAD_ox FAD-link 100.0 1.9E-33 4.2E-38 301.8 36.9 379 148-562 9-411 (419)
15 PLN02465 L-galactono-1,4-lacto 100.0 1.6E-32 3.4E-37 299.4 40.3 195 148-352 94-289 (573)
16 PF02913 FAD-oxidase_C: FAD li 100.0 1.3E-34 2.8E-39 288.7 14.3 242 324-565 1-248 (248)
17 PF01565 FAD_binding_4: FAD bi 99.9 1.4E-27 3E-32 218.4 12.4 136 151-287 1-138 (139)
18 KOG4730 D-arabinono-1, 4-lacto 99.9 1.2E-23 2.7E-28 215.7 22.3 175 150-331 49-224 (518)
19 PRK13905 murB UDP-N-acetylenol 99.9 2.3E-24 5E-29 221.6 15.6 166 143-325 23-193 (298)
20 PRK14652 UDP-N-acetylenolpyruv 99.9 3.3E-23 7.2E-28 212.4 18.9 189 112-325 3-196 (302)
21 PRK13906 murB UDP-N-acetylenol 99.9 5.2E-22 1.1E-26 204.0 18.3 188 113-324 4-197 (307)
22 PRK12436 UDP-N-acetylenolpyruv 99.9 3E-22 6.4E-27 205.8 15.7 188 113-324 4-197 (305)
23 TIGR00179 murB UDP-N-acetyleno 99.9 6.8E-22 1.5E-26 201.4 14.8 167 143-322 5-173 (284)
24 PRK13903 murB UDP-N-acetylenol 99.8 1.2E-20 2.6E-25 196.9 15.3 164 143-325 25-197 (363)
25 PRK14653 UDP-N-acetylenolpyruv 99.8 1.8E-20 3.8E-25 191.2 16.0 190 113-325 3-194 (297)
26 PRK14649 UDP-N-acetylenolpyruv 99.8 1.3E-19 2.8E-24 185.5 14.2 174 143-325 13-193 (295)
27 COG0812 MurB UDP-N-acetylmuram 99.8 3.1E-18 6.7E-23 171.5 16.6 167 142-324 12-183 (291)
28 PRK14650 UDP-N-acetylenolpyruv 99.8 3.1E-18 6.7E-23 174.2 13.5 166 143-326 25-196 (302)
29 PRK00046 murB UDP-N-acetylenol 99.8 8.2E-18 1.8E-22 173.6 13.7 171 143-324 13-188 (334)
30 PRK14648 UDP-N-acetylenolpyruv 99.7 5E-17 1.1E-21 167.5 13.5 172 143-325 22-237 (354)
31 KOG1262 FAD-binding protein DI 99.7 4.4E-17 9.6E-22 164.4 8.8 145 198-346 105-250 (543)
32 PRK14651 UDP-N-acetylenolpyruv 99.6 7.6E-15 1.7E-19 147.4 14.0 152 143-324 13-170 (273)
33 PRK13904 murB UDP-N-acetylenol 99.4 2.7E-13 5.9E-18 135.0 10.1 148 142-326 10-161 (257)
34 PF09330 Lact-deh-memb: D-lact 98.3 7.1E-05 1.5E-09 74.1 18.7 163 383-564 115-282 (291)
35 PF09265 Cytokin-bind: Cytokin 97.7 0.00025 5.5E-09 71.7 10.5 117 444-564 140-278 (281)
36 PF04030 ALO: D-arabinono-1,4- 97.1 0.0033 7.1E-08 63.6 10.2 111 446-562 126-253 (259)
37 PRK09799 putative oxidoreducta 96.5 0.0036 7.8E-08 63.3 5.5 140 153-320 4-155 (258)
38 PF00941 FAD_binding_5: FAD bi 96.5 0.0012 2.7E-08 62.5 2.0 102 151-256 2-115 (171)
39 PLN00107 FAD-dependent oxidore 96.5 0.012 2.5E-07 58.6 8.5 112 447-563 64-197 (257)
40 TIGR03312 Se_sel_red_FAD proba 96.0 0.0096 2.1E-07 60.2 5.4 99 154-256 4-109 (257)
41 TIGR02963 xanthine_xdhA xanthi 95.4 0.03 6.6E-07 61.4 6.6 102 151-256 192-303 (467)
42 PF08031 BBE: Berberine and be 95.2 0.013 2.7E-07 43.1 2.0 29 533-562 14-42 (47)
43 PLN02906 xanthine dehydrogenas 91.3 0.28 6E-06 60.7 5.8 101 152-256 229-350 (1319)
44 PLN00192 aldehyde oxidase 90.3 0.5 1.1E-05 58.5 6.7 106 151-256 233-352 (1344)
45 PRK09971 xanthine dehydrogenas 90.3 0.67 1.5E-05 47.8 6.7 100 153-256 6-118 (291)
46 TIGR03195 4hydrxCoA_B 4-hydrox 89.6 0.77 1.7E-05 47.9 6.5 99 153-256 6-117 (321)
47 TIGR02969 mam_aldehyde_ox alde 87.7 0.96 2.1E-05 56.1 6.6 102 152-257 237-359 (1330)
48 TIGR03199 pucC xanthine dehydr 87.4 0.69 1.5E-05 46.9 4.4 95 157-256 1-109 (264)
49 COG4630 XdhA Xanthine dehydrog 83.7 2.6 5.7E-05 44.1 6.3 128 150-288 202-342 (493)
50 COG1319 CoxM Aerobic-type carb 64.2 16 0.00035 37.4 6.2 102 151-256 3-117 (284)
51 COG4981 Enoyl reductase domain 28.3 77 0.0017 35.2 4.4 93 149-250 150-253 (717)
52 PF03471 CorC_HlyC: Transporte 26.8 1.7E+02 0.0038 23.5 5.5 39 213-256 4-42 (81)
53 cd02742 GH20_hexosaminidase Be 24.1 66 0.0014 33.2 3.1 24 157-180 68-91 (303)
54 PF10469 AKAP7_NLS: AKAP7 2'5' 23.8 1.8E+02 0.0039 28.0 5.9 84 481-564 38-136 (209)
55 cd06568 GH20_SpHex_like A subg 23.6 68 0.0015 33.6 3.0 23 158-180 72-94 (329)
56 PF15608 PELOTA_1: PELOTA RNA 23.3 95 0.0021 26.6 3.3 34 150-183 55-89 (100)
57 cd06565 GH20_GcnA-like Glycosy 22.8 73 0.0016 32.9 3.1 24 157-180 56-79 (301)
58 PF00728 Glyco_hydro_20: Glyco 21.6 67 0.0014 33.6 2.6 23 158-180 70-92 (351)
59 cd06570 GH20_chitobiase-like_1 21.5 81 0.0018 32.8 3.1 23 158-180 65-87 (311)
60 cd07033 TPP_PYR_DXS_TK_like Py 21.4 1.4E+02 0.0029 27.5 4.3 31 150-180 122-153 (156)
61 PRK04322 peptidyl-tRNA hydrola 21.0 2E+02 0.0044 25.2 5.0 32 148-179 45-76 (113)
62 KOG3282 Uncharacterized conser 20.9 1.8E+02 0.0038 27.8 4.8 33 148-180 122-154 (190)
63 cd06563 GH20_chitobiase-like T 20.7 83 0.0018 33.3 3.0 22 159-180 84-105 (357)
64 COG4359 Uncharacterized conser 20.5 1E+02 0.0023 29.5 3.2 24 163-186 78-101 (220)
65 cd06562 GH20_HexA_HexB-like Be 20.3 87 0.0019 33.1 3.1 22 159-180 68-89 (348)
No 1
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=1.1e-91 Score=768.43 Aligned_cols=555 Identities=82% Similarity=1.280 Sum_probs=484.6
Q ss_pred HhhhchhhhhccccCCCCCCCcccccccccccCCCCCCCCCCcccccchhhHHHHHHhhccccccccCCCCcccCccccc
Q 008252 10 RLRSSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASAGSLAMQSQTHPSLCDSSALDS 89 (572)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (572)
|+|+.+++.|.+.+++.+...|.+ ++++.+++.++. +|++| |..-++++++.++.+.+.....++++|+.+....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (555)
T PLN02805 1 RLRSLLRTSRPNRALPSFPKSTLD---VTVTTPVKGRRR-LPTSW-SSSLLPLAIAASAGSLAYLNQSNPSLCDSSDLDS 75 (555)
T ss_pred CcchhhhhccccccCCCCcccccC---ccccccccCCCC-CCCcc-ccccchHHHHHHHHHHHHhcCcceeecccccccc
Confidence 678899999999998866654421 222333333333 44444 2223445555555444444446667887666666
Q ss_pred CCcccCCCCcccccccCCCCCCcHHHHHHHHHhcCCCeeeChhhhhhccCCCCccccCCCCCCEEEEcCCHHHHHHHHHH
Q 008252 90 RDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKC 169 (572)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~eeV~~iv~~ 169 (572)
. +|+..+.++........++++++++|++++++++.++.++++.|+++..++++....|.+|++|+|++||+++|++
T Consensus 76 ~---~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~v~~~~~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~ivk~ 152 (555)
T PLN02805 76 R---VGGKGSTEFVVKGEHKLVPQELIDELKAILQDNMTLDYDERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKIVKS 152 (555)
T ss_pred c---ccCccccchhhccccccchHHHHHHHHHhcCCceecCHHHHHHhccCcccccccCCCCCEEEEcCCHHHHHHHHHH
Confidence 5 8999998888888888888899999999999889899888888877655454444579999999999999999999
Q ss_pred HHhCCCCEEEECCCCCCCCCCCCCCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHHHHHHccCCCccCCCCCCcccc
Q 008252 170 CDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATI 249 (572)
Q Consensus 170 a~~~~~~v~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~~~L~~~Gl~l~~~~~~~~tv 249 (572)
|+++++||+|+|||||+.|++++.++|++|||++||+|+++|+++.+|+||||+++.+|+++|.++|+++|.++++.+||
T Consensus 153 a~~~~ipv~prGgGts~~G~~~~~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~L~~~L~~~Gl~~p~~p~~~~TI 232 (555)
T PLN02805 153 CNKYKVPIVPYGGATSIEGHTLAPHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNEYLEPYGLFFPLDPGPGATI 232 (555)
T ss_pred HHHCCCcEEEECCCCCCCCCccCCCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHHHHHHHHcCCEeCCCCccccCh
Confidence 99999999999999999999887778999999999999999999999999999999999999999999999999988999
Q ss_pred cccccccccCCCccccccccceeeeEEEEeeCCcEEEcccccccCcCCccchhhhhcCCCCeEEEEEEEEeeeccccceE
Q 008252 250 GGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSV 329 (572)
Q Consensus 250 GG~v~~~~~G~~~~~yG~~~D~v~~~~vV~~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~ 329 (572)
||++++|++|..+.+||.++|+|++++||++||++++++....++..||||+|+++|++|+|||||++|||++|.|+...
T Consensus 233 GG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~ 312 (555)
T PLN02805 233 GGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSV 312 (555)
T ss_pred hhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceE
Confidence 99999999999999999999999999999999999998777677778999999999999999999999999999999999
Q ss_pred EEEEecCCHHHHHHHHHHHHHcCCceeeeeeccHHHHHHHHhhcCCCCCCCCceEEEEecChhhHHHHHHHHHHHhhhcC
Q 008252 330 VATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTQAYSHEQTLIVQKIVSEHN 409 (572)
Q Consensus 330 ~~~~~f~~~~~a~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~i~~~~~ 409 (572)
..++.|++++++.+++.+++..++.|+++|+||...++.++......+|+.+.+++++.|+++.++++.+.+++++.+++
T Consensus 313 ~~~~~f~~~~~a~~av~~i~~~g~~psa~ElmD~~~~~~~~~~~~~~~p~~~~Ll~e~~g~~~~~~~~~~~~~~i~~~~g 392 (555)
T PLN02805 313 VAMCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQIRAINMANGKNLPEAPTLMFEFIGTEAYAREQTLIVQKIASKHN 392 (555)
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCCcEEEEEECHHHHHHHHHhcCCCCCcceEEEEEEecCcHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999988889999999999998887766554445666678999999988877777778888888888
Q ss_pred cceEEEcCCHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeecchhHHHHHHHHHHHhccCCcEEEEEEEecCCceEEE
Q 008252 410 GTDFIFAEDPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTV 489 (572)
Q Consensus 410 g~~~~~~~~~~~~~~lw~~R~~~~~~~~~~~~~~~~~~~D~~vP~s~l~e~l~~~~~~~~~~~~~~~~~gH~gdG~~h~~ 489 (572)
+.++.++.++++..++|+.|+..++......+....+..|++||+++++++++.+++.++++++.+.+++|+||||+|++
T Consensus 393 ~~~~~~a~~~~e~~~lW~~R~~~~~~~~~~~~~~~~~~~DvaVP~s~L~e~i~~~~~~~~~~~~~~~~~gHaGdGnlH~~ 472 (555)
T PLN02805 393 GSDFVFAEEPEAKKELWKIRKEALWACFAMEPKYEAMITDVCVPLSHLAELISRSKKELDASPLVCTVIAHAGDGNFHTI 472 (555)
T ss_pred CceEEEeCCHHHHHHHHHHHHHHHHHHhhcCCCCceeEEEEEEEHHHHHHHHHHHHHHHHHcCCeEEEEEEcCCCcEEEE
Confidence 88888888999999999999999888776666555578899999999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEeccccccccHHHHHHhhCHHHHHHHHHHHHhcCCCCCccCCCccCCC
Q 008252 490 ILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLIPPH 569 (572)
Q Consensus 490 i~~~~~~~~~~~~~~~~~~~l~~~~~~~gG~~s~ehGiG~~k~~~l~~~~g~~~~~~~~~lK~~~DP~gIlNPGk~~~~~ 569 (572)
++++..++++.++++++.+++++.++++||++|+|||+|..|++|+.+++|++.+++|++||++|||+|||||||+||||
T Consensus 473 i~~~~~~~~~~~~~~~~~~~i~~~~~~~gGsiSgEHGiG~~k~~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~~~ 552 (555)
T PLN02805 473 ILFDPSQEDQRREAERLNHFMVHTALSMEGTCTGEHGVGTGKMKYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIPPH 552 (555)
T ss_pred eccCCCCHHHHHHHHHHHHHHHHHHHHcCCeEeEECCCChhHHHHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeCcc
Confidence 99988788888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 008252 570 ICF 572 (572)
Q Consensus 570 ~~~ 572 (572)
|||
T Consensus 553 ~~~ 555 (555)
T PLN02805 553 VCF 555 (555)
T ss_pred ccC
Confidence 998
No 2
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=1.3e-73 Score=622.84 Aligned_cols=450 Identities=26% Similarity=0.448 Sum_probs=399.8
Q ss_pred HHHHHHHHHhcCC-CeeeChhhhhhccCCCCccccCCCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCC
Q 008252 113 QELVDELKAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191 (572)
Q Consensus 113 ~~~~~~L~~~lg~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~ 191 (572)
++++++|++++|. ++.++.+.+..|+++..+.++ ..|.+|++|+|++||+++|++|+++++||+|+|+||++.|++.
T Consensus 19 ~~~~~~l~~~~g~~~v~~~~~~~~~y~~d~~~~~~--~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~ 96 (499)
T PRK11230 19 TSLLMALREHLPGLEILHTDEELIPYECDGLSAYR--TRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGAL 96 (499)
T ss_pred HHHHHHHHHhcCcceEEcCHHHHHHhccCcccccC--CCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcc
Confidence 5688999999986 688888777777666444433 4899999999999999999999999999999999999998888
Q ss_pred CCCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHHHHHHccCCCccCCCCCC--cccccccccccccCCCcccccccc
Q 008252 192 SPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSLAVRYGTMR 269 (572)
Q Consensus 192 ~~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~~~L~~~Gl~l~~~~~~--~~tvGG~v~~~~~G~~~~~yG~~~ 269 (572)
+..+|++|||++||+|+++|+++++|+||||+++.+|+++|.++|+.++++++. .+||||++++|++|..+.+||.+.
T Consensus 97 ~~~~gividl~~ln~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~ 176 (499)
T PRK11230 97 PLEKGVLLVMARFNRILDINPVGRRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTV 176 (499)
T ss_pred cCCCcEEEEcccCCCceEEcCCCCEEEEcCCccHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChh
Confidence 767799999999999999999999999999999999999999999999887764 589999999999999999999999
Q ss_pred ceeeeEEEEeeCCcEEEcccccccCcCCccchhhhhcCCCCeEEEEEEEEeeeccccceEEEEEecCCHHHHHHHHHHHH
Q 008252 270 DNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATM 349 (572)
Q Consensus 270 D~v~~~~vV~~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 349 (572)
|+|++++||++||++++++... .+..||||+++++||+|+|||||++|||++|.|+......+.|++++++.+++.+++
T Consensus 177 d~v~~levVl~~G~i~~~~~~~-~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 177 HNLLKVEILTLDGEALTLGSDA-LDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred hheeEEEEEcCCCcEEEeCCcc-CCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 9999999999999999987653 334699999999999999999999999999999998888999999999999999988
Q ss_pred HcCCceeeeeeccHHHHHHHHhhcCCCCC--CCCceEEEEecChhhHHHHHHHHHHHhhhcCcceEEEcCCHHHHHHHHH
Q 008252 350 LSGIQVSRVELLDEVQVRAVNIANGKNLP--ELPTLMFEFIGTQAYSHEQTLIVQKIVSEHNGTDFIFAEDPEAKKELWK 427 (572)
Q Consensus 350 ~~~~~~~~~e~~d~~~~~~~~~~~~~~~~--~~~~l~~~~~g~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~lw~ 427 (572)
..++.|.++|++|...+...+.......| ....++++++|.++.++.+.+.+++++.+.++.+..++.+.++...+|.
T Consensus 256 ~~~~~p~~~el~d~~~~~~~~~~~~~~~p~~~~~~ll~e~~g~~~~v~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~W~ 335 (499)
T PRK11230 256 AAGIIPGGLEMMDNLSIRAAEDFIHAGYPVDAEAILLCELDGVESDVQEDCERVNDILLKAGATDVRLAQDEAERVRFWA 335 (499)
T ss_pred hcCCCcEEEEeeCHHHHHHHHHhcCCCCCCCcceEEEEEecCCchHHHHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHH
Confidence 88899999999999877655433222232 3357889999998777777788888888887777777788888888999
Q ss_pred HHHHHHHHHHhcCCCcceeeeeeeecchhHHHHHHHHHHHhccCCcEEEEEEEecCCceEEEEeeCCCCHHHHHHHHHHH
Q 008252 428 MRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLN 507 (572)
Q Consensus 428 ~R~~~~~~~~~~~~~~~~~~~D~~vP~s~l~e~l~~~~~~~~~~~~~~~~~gH~gdG~~h~~i~~~~~~~~~~~~~~~~~ 507 (572)
.|+..++......+. .+..|++||+++++++++.+++.++++++.+.+++|+|+||+|++++++..++++.++++++.
T Consensus 336 ~R~~~~~~~~~~~~~--~~~~dv~vP~~~l~~~~~~~~~~~~~~~~~~~~~gH~GdGn~H~~i~~~~~~~~~~~~~~~~~ 413 (499)
T PRK11230 336 GRKNAFPAVGRISPD--YYCMDGTIPRRELPGVLEGIARLSQQYGLRVANVFHAGDGNMHPLILFDANEPGELERAEALG 413 (499)
T ss_pred HHHhhHHHHHhhCCC--eeEEeecCChHHHHHHHHHHHHHHHHcCCeEEEEEEeCCCcceeeecCCCCCHHHHHHHHHHH
Confidence 998877766655443 346799999999999999999999999999999999999999999988877777778889999
Q ss_pred HHHHHHHHhcCCeEEeccccccccHHHHHHhhCHHHHHHHHHHHHhcCCCCCccCCCccC
Q 008252 508 RFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLIP 567 (572)
Q Consensus 508 ~~l~~~~~~~gG~~s~ehGiG~~k~~~l~~~~g~~~~~~~~~lK~~~DP~gIlNPGk~~~ 567 (572)
+.+.+.++++||++|+|||+|+.|++|+..++|++.+++|++||++|||+|||||||+|+
T Consensus 414 ~~l~~~~~~~GG~is~EHGiG~~k~~~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~~ 473 (499)
T PRK11230 414 GKILELCVEVGGSITGEHGVGREKINQMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNIP 473 (499)
T ss_pred HHHHHHHHHcCCeEeeeccCchhhHHHHHHhcCHHHHHHHHHHHHHcCCCcCCCCCeEeC
Confidence 999999999999999999999999999999999999999999999999999999999996
No 3
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=100.00 E-value=2.6e-70 Score=587.14 Aligned_cols=409 Identities=35% Similarity=0.611 Sum_probs=369.2
Q ss_pred EEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCCCCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHHHHHHc
Q 008252 154 IVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLE 233 (572)
Q Consensus 154 vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~~~L~ 233 (572)
||+|+|++||+++|++|+++++||+|+|+|||+.|++.+.+++++|||++||+|+++|+++.+++||||+++.+|+++|.
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l~ 80 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEEGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAVE 80 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCCCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHHH
Confidence 57899999999999999999999999999999998888777899999999999999999999999999999999999999
Q ss_pred cCCCccCCCCCC--cccccccccccccCCCccccccccceeeeEEEEeeCCcEEEcccccccCcCCccchhhhhcCCCCe
Q 008252 234 PYGLFFPLDPGP--GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTL 311 (572)
Q Consensus 234 ~~Gl~l~~~~~~--~~tvGG~v~~~~~G~~~~~yG~~~D~v~~~~vV~~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~l 311 (572)
++|+++|++++. .+||||++++|++|..+.+||.++|+|++++||++||++++++....++..||||+++++|++|+|
T Consensus 81 ~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~Gtl 160 (413)
T TIGR00387 81 EHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSEGTL 160 (413)
T ss_pred HcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCCccc
Confidence 999999987765 599999999999999999999999999999999999999999877667889999999999999999
Q ss_pred EEEEEEEEeeeccccceEEEEEecCCHHHHHHHHHHHHHcCCceeeeeeccHHHHHHHHhhcCCCCCC--CCceEEEEec
Q 008252 312 GIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPE--LPTLMFEFIG 389 (572)
Q Consensus 312 GIIt~~tlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~--~~~l~~~~~g 389 (572)
||||++|||++|.|+......+.|++++++.+++.+++..++.|.++|++|...+..+.......+|. ...++++++|
T Consensus 161 Giit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~a~el~d~~~~~~~~~~~~~~~p~~~~~~l~v~~~g 240 (413)
T TIGR00387 161 GIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIAAGIIPAGMEFLDNLSIKAVEDISGIGLPKDAGAILLVEIDG 240 (413)
T ss_pred eEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHhcCCCcEEEEccCHHHHHHHHHhcCCCCCCCCceEEEEEecC
Confidence 99999999999999998888999999999999999988889999999999998776554433333443 2368899999
Q ss_pred ChhhHHHHHHHHHHHhhhcCcceEEEcCCHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeecchhHHHHHHHHHHHhc
Q 008252 390 TQAYSHEQTLIVQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELD 469 (572)
Q Consensus 390 ~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~lw~~R~~~~~~~~~~~~~~~~~~~D~~vP~s~l~e~l~~~~~~~~ 469 (572)
..+.++++.+.+.+++++.++.+...+.++++..++|..|+...+......+. .+..|++||+++++++++.+++.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~~~--~~~~d~~vp~~~l~~~~~~~~~~~~ 318 (413)
T TIGR00387 241 VHEAVERDEEKIEQICRKNGAVDVQIAQDEEERALLWAGRRNAFKAASKLSPL--YLIEDGTVPRSKLPEALRGIADIAR 318 (413)
T ss_pred CcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHHHHHhHHHHHhhCCC--cceeEEecCHHHHHHHHHHHHHHHH
Confidence 88777777788888888877766777777888899999999877665443332 3568999999999999999999999
Q ss_pred cCCcEEEEEEEecCCceEEEEeeCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEeccccccccHHHHHHhhCHHHHHHHHH
Q 008252 470 ASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKR 549 (572)
Q Consensus 470 ~~~~~~~~~gH~gdG~~h~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~gG~~s~ehGiG~~k~~~l~~~~g~~~~~~~~~ 549 (572)
++++..++++|+|+||+|++++++..++++.+++.++.+.+.+.+.++||++|+|||+|..|.+|+.+++++..+++|++
T Consensus 319 ~~~~~~~~~gH~g~g~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~is~eHG~G~~r~~~~~~~~~~~~~~~~~~ 398 (413)
T TIGR00387 319 KYDFTIANFGHAGDGNLHPTILTDPEDKGEMERVEEAGGEIFELAIELGGTISGEHGIGVVKAEFMPYKFNEKELETMRA 398 (413)
T ss_pred HcCCeEEEEEEecCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeccCcHhHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999999888887777788888999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCccCCC
Q 008252 550 IKVALDPNNIMNPGK 564 (572)
Q Consensus 550 lK~~~DP~gIlNPGk 564 (572)
||++|||+|||||||
T Consensus 399 iK~~fDP~~ilNPGk 413 (413)
T TIGR00387 399 IKKAFDPDNILNPGK 413 (413)
T ss_pred HHHHcCcCcCCCCcC
Confidence 999999999999998
No 4
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=2.6e-59 Score=509.92 Aligned_cols=442 Identities=38% Similarity=0.620 Sum_probs=369.2
Q ss_pred HHhcCC-CeeeChhhhhhccCCCCccccCCCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCCCCCcEE
Q 008252 120 KAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVC 198 (572)
Q Consensus 120 ~~~lg~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~gvv 198 (572)
..+++. .+.++...+..+..+.. .....|.+|+.|+|++||+++|++|+++++||+|+|+|||+.|++.+. +|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~gvv 78 (459)
T COG0277 3 KRILGELNVLTDPADRAAYRTDAS---VYRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-GGVV 78 (459)
T ss_pred hHhcCccceecCHHHHhhccCCcc---hhcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-CcEE
Confidence 445553 35555555555544433 223589999999999999999999999999999999999999999887 7999
Q ss_pred EEcCCCCCcEEeccCCCeEEEcCCCCHHHHHHHHccCCCccCCCCCC--cccccccccccccCCCccccccccceeeeEE
Q 008252 199 IDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSLAVRYGTMRDNVINLK 276 (572)
Q Consensus 199 Idl~~mn~i~~~~~~~~~v~v~aGv~~~~L~~~L~~~Gl~l~~~~~~--~~tvGG~v~~~~~G~~~~~yG~~~D~v~~~~ 276 (572)
|||++||+|+++|+++.+++||||+++.+|+++|.++|+++|++|++ .+||||++++|++|..+.+||.+.|+|++++
T Consensus 79 l~l~~mn~i~~id~~~~~~~v~aGv~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~ 158 (459)
T COG0277 79 LDLSRLNRILEIDPEDGTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLR 158 (459)
T ss_pred EEchhhcchhccCcCCCEEEEcCCccHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEE
Confidence 99999999988999999999999999999999999999999999987 5999999999999999999999999999999
Q ss_pred EEeeCCcEEEcccccccCcCCccchhhhhcCCCCeEEEEEEEEeeeccccceEEEEEecCCHHHHHHHHHHHH----HcC
Q 008252 277 VVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATM----LSG 352 (572)
Q Consensus 277 vV~~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~----~~~ 352 (572)
+|++||++++++.+..|+..||||+++++|++|+|||||++|||+.|.|+........+++.+.+........ ..+
T Consensus 159 vV~~dG~i~~~~~~~~k~~~g~dl~~l~iGs~GtlGiit~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (459)
T COG0277 159 VVLPDGEILRLGRKLRKDNAGYDLTALFVGSEGTLGIITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLEALG 238 (459)
T ss_pred EEcCCceehhhcCcccCCCCCCCHHHhcccCCccceEEEEEEEEeccCCchheEEEEeCCCHHHHHHHHHHHHHhhhhcC
Confidence 9999999999999888888999999999999999999999999999999999988999999888765333222 233
Q ss_pred CceeeeeeccHHHHHHHHhhcCCCCCCC--CceEEEEecCh-hhHHHHHHHHHHHhhhcC-cceEEEcCCHHHHHHHHHH
Q 008252 353 IQVSRVELLDEVQVRAVNIANGKNLPEL--PTLMFEFIGTQ-AYSHEQTLIVQKIVSEHN-GTDFIFAEDPEAKKELWKM 428 (572)
Q Consensus 353 ~~~~~~e~~d~~~~~~~~~~~~~~~~~~--~~l~~~~~g~~-~~~~~~~~~~~~i~~~~~-g~~~~~~~~~~~~~~lw~~ 428 (572)
..+..+|+++...............+.. ..+++++.+.. ..+.+....+.+++.+.. ..+..+..+.++..++|..
T Consensus 239 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (459)
T COG0277 239 VIPAALEFMDRPIKAAEAYLGGGALPLEAPARLLVEVEGSDEAAVDEALEALGELLLEHGLARDLVVAQDLAEAARLWLA 318 (459)
T ss_pred CCceeeeecchhHHHHHHhccccCCCCCCceEEEEEEcCCcHHHHHHHHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHH
Confidence 6788999999862111122222223322 23677777766 445555555666665555 4556677788888999999
Q ss_pred HHHHHHHHHhcCCCcceeeeeeeecchhHHHHHHHHHHHhccCC--cEEEEEEEecCCceEEEEeeCCCC-HHHHHHHHH
Q 008252 429 RKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASP--LICTVIAHAGDGNFHTVILFDPSK-EEDRQEAER 505 (572)
Q Consensus 429 R~~~~~~~~~~~~~~~~~~~D~~vP~s~l~e~l~~~~~~~~~~~--~~~~~~gH~gdG~~h~~i~~~~~~-~~~~~~~~~ 505 (572)
|+..........+. .+..|+++|.+++.++++.+.+.+..++ +.+..++|.+|||+|+.+.++..+ ++..+...+
T Consensus 319 r~~~~~~~~~~~~~--~~~~d~~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~ 396 (459)
T COG0277 319 RKGALAAAGALGPG--VIQEDVVVPLEALPEFLREILALLDKAGLALRVALFGHAGDGNLHLNILYDVGDEAEELARAEA 396 (459)
T ss_pred HHHHHHHHHhhCCC--ccccceeeeHHHHHHHHHHHHHHHHhcCCCceeeeecccCCCcceeeeccCCCccHHHHHHHHH
Confidence 99888776655544 4577999999999999999999999886 788899999999999988876653 456677788
Q ss_pred HHHHHHHHHHhcCCeEEeccccccccHHHHHHhhCHHHHHHHHHHHHhcCCCCCccCCCccCC
Q 008252 506 LNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLIPP 568 (572)
Q Consensus 506 ~~~~l~~~~~~~gG~~s~ehGiG~~k~~~l~~~~g~~~~~~~~~lK~~~DP~gIlNPGk~~~~ 568 (572)
+.+.+.+.+.++||++++|||+|..+.+|+..+.+ +.+++|+++|++|||+|||||||+++.
T Consensus 397 ~~~~i~~~~~~~gG~~~~~h~~g~~~~~~~~~~~~-~~~~~~~~~k~~~DP~~i~npg~~~~~ 458 (459)
T COG0277 397 LNEAIEALAVELGGSISGEHGIGRTKAEFLELEPG-EAWALLRAIKRAFDPNGIFNPGKLFRL 458 (459)
T ss_pred HHHHHHHHHHHhCCeeEEecccchhhHHHHHHHHh-HHHHHHHHHHHhcCCCCCCCCCccCCC
Confidence 99999999999999999999999999999999888 899999999999999999999999875
No 5
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=7.5e-62 Score=495.24 Aligned_cols=410 Identities=38% Similarity=0.587 Sum_probs=364.5
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhC--CCCEEEECCCCCCCCCCCCCCCcEEEEcC---CCCCcEEeccCCCeEEEcCC
Q 008252 148 VNIPDIIVFPRSEDEVSKIVKCCDKH--KVPIIPYGGATSIEGHTLSPNGGVCIDLS---LMKSVKALHIEDMDVVVEPG 222 (572)
Q Consensus 148 ~~~p~~vv~P~s~eeV~~iv~~a~~~--~~~v~~~GgG~s~~g~~~~~~~gvvIdl~---~mn~i~~~~~~~~~v~v~aG 222 (572)
...|.+|..|+|+|||++++|.|+.+ .+||.|||+|||+.|++++..+|++|.|+ .|+++-.+..++.+|.|+||
T Consensus 61 ~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~~GvvV~m~~~~~~~~~~~~~~~~~yvdV~~g 140 (505)
T KOG1231|consen 61 QLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATRGGVVVCMDSSLLMKDVPVLVVDDLYVDVSAG 140 (505)
T ss_pred CCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCCCCeEEEEehhhccCCCceeecccceEEeeCC
Confidence 35899999999999999999999999 99999999999999999987889665553 56777667788899999999
Q ss_pred CCHHHHHHHHccCCC--ccCCCCCCcccccccccccccCCCccccccccceeeeEEEEeeCCcEEEcccccccCcCCccc
Q 008252 223 IGWMELNEYLEPYGL--FFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDL 300 (572)
Q Consensus 223 v~~~~L~~~L~~~Gl--~l~~~~~~~~tvGG~v~~~~~G~~~~~yG~~~D~v~~~~vV~~dG~i~~~~~~~~~~~~g~dl 300 (572)
..|-||++++.++|+ ..+.|+++ .||||++++.|+|..+.+||.+.+||+.++||+++|++++|..+ .|++|
T Consensus 141 ~~Widll~~t~e~GL~p~swtDyl~-ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r-----~n~~l 214 (505)
T KOG1231|consen 141 TLWIDLLDYTLEYGLSPFSWTDYLP-LTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKR-----ANSNL 214 (505)
T ss_pred hhHHHHHHHHHHcCCCccCcCCccc-eeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccc-----cCcee
Confidence 999999999999999 68888888 99999999999999999999999999999999999999999765 68999
Q ss_pred hhhhhcCCCCeEEEEEEEEeeeccc---cceEEEEE-ecCCHHHHHHHHHHHHHcCCceeeeeeccHHHHHHHHhhcCC-
Q 008252 301 TRLIIGSEGTLGIITEVTLRLQKIP---QHSVVATC-NFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGK- 375 (572)
Q Consensus 301 ~~~~~Gs~G~lGIIt~~tlkl~p~p---~~~~~~~~-~f~~~~~a~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~- 375 (572)
|.++.|++|+|||||+++++|+|.| +.....+. .|+.+++++...+..+..++..++++..|..++..++.....
T Consensus 215 f~~vlGglGqfGIITrArI~le~aP~~dQe~lis~~~~fd~veg~~~~~~~gl~~n~r~s~f~l~D~~~i~~~~~~~~~~ 294 (505)
T KOG1231|consen 215 FFLVLGGLGQFGIITRARIKLEPAPKRDQERLISVCGSFDTVEGAAIVARNGLQSNIRVSRFELLDEVQIAAINSDHSTN 294 (505)
T ss_pred eeeeeccCcceeeEEEEEEEeccCCccchHHhhhhhcCCcchhhhhhhhhccccccceeeccccCcHHHHHHHHhcCCee
Confidence 9999999999999999999999999 66666666 899999998887788888999999999999999988876553
Q ss_pred ---------CCCCCCceEEEEecC-hhhHHHHHHHHHHHhhhcCcce-EEEcCCHHHHHHHHHHHHHHHHHHHhcCCC--
Q 008252 376 ---------NLPELPTLMFEFIGT-QAYSHEQTLIVQKIVSEHNGTD-FIFAEDPEAKKELWKMRKEALWACFAMEPS-- 442 (572)
Q Consensus 376 ---------~~~~~~~l~~~~~g~-~~~~~~~~~~~~~i~~~~~g~~-~~~~~~~~~~~~lw~~R~~~~~~~~~~~~~-- 442 (572)
++.+.|+++.++.+. +.....+...++..++.+...+ +.+++++.....+|++||. |.+..+..+
T Consensus 295 yclev~ky~d~~e~pti~~e~~~l~~~l~~~~~~~~~~~v~y~~fldrv~~ae~klrskgLWevphp--WlnL~vpks~i 372 (505)
T KOG1231|consen 295 YCLEVAKYYDLTEAPTLFQEIGGLSEKLNYAPTFIVEQDVQYHDFLDRVHFAEDKLRSKGLWEVPHP--WLNLAVPKSRI 372 (505)
T ss_pred eeeehhhccCcccCchHHHHHhccchhhhccchhhhhhhhHHHHhhhHhhhcccchhhcccccCCCc--hheeecccccc
Confidence 367788999888884 4455555566777777777666 7888888888999999997 887766554
Q ss_pred ---cceeeeeeeecchhHHHHHHHHHHHhccCCcEEEEEEEecCCceEEEEeeCCCCHHHHHHHHHHHHHHHHHHHhcCC
Q 008252 443 ---FEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEG 519 (572)
Q Consensus 443 ---~~~~~~D~~vP~s~l~e~l~~~~~~~~~~~~~~~~~gH~gdG~~h~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~gG 519 (572)
...+..|+++|.++.+.++-..++.++.....+.+.+|+++|+||.++++.++.+++.++++++++.|++.+++. |
T Consensus 373 ~~fa~gv~~dIl~~~s~g~~liyptnk~~kw~~~~sav~ph~~e~vFy~v~~l~s~~~~~~e~~~~~n~riv~fc~~a-g 451 (505)
T KOG1231|consen 373 SDFARGVFTDILVPNSSGPVLIYPTNKDLKWSNRLSAVTPHAGEGVFYLVILLRSSGKEEHEELEQLNDRIVKFCLAA-G 451 (505)
T ss_pred hhhhhhhccceeeccCCCceEEeccccCcchhhhhccccccCCCceEEEEEEecCCCchhHHHHHHHHHHHHHHHHHc-C
Confidence 234688999999999999999988887777888899999999999999999999999999999999999999999 9
Q ss_pred eEEeccccccccHHHHHHhhCHHHHHHHHHHHHhcCCCCCccCCCccC
Q 008252 520 TCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLIP 567 (572)
Q Consensus 520 ~~s~ehGiG~~k~~~l~~~~g~~~~~~~~~lK~~~DP~gIlNPGk~~~ 567 (572)
++.+||++|..+++|+.+++|+.-.++|+ +|.+|||+.|||||+.|+
T Consensus 452 ~~~keyl~~~~~~e~w~~hfG~~w~~f~~-~K~~~DPk~Il~PGq~If 498 (505)
T KOG1231|consen 452 TCTKEYLPHYGKREYWVEHFGEKWVDFMR-IKKAYDPKRILNPGQRIF 498 (505)
T ss_pred cChhhhcCCcccHHHHHHHhChhHHHHHH-HHhhcCHHHhcCCccccc
Confidence 99999999999999999999987777777 999999999999999986
No 6
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=1.3e-58 Score=460.34 Aligned_cols=451 Identities=29% Similarity=0.443 Sum_probs=381.2
Q ss_pred CCCCCcHHHHHHHHHhcCC-CeeeChhhhhhccCCCCccccCCCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCC
Q 008252 107 SHKEIPQELVDELKAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATS 185 (572)
Q Consensus 107 ~~~~~~~~~~~~L~~~lg~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s 185 (572)
..+.+.++-+..+++++|+ .+.++.++...|.. .++.+..+....|.+|.|++||++|+++|++.++.|+|+||.|+
T Consensus 47 ~fa~l~~~Dl~~Fk~iLg~d~~~~~~edL~~~n~--dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTg 124 (511)
T KOG1232|consen 47 NFAKLDSKDLAYFKSILGKDEVSTDKEDLENFNT--DWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTG 124 (511)
T ss_pred CcccccHHHHHHHHHHhcccccccChHHHhhhhh--HHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcc
Confidence 5567888889999999996 45566655544433 34556678999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHHHHHHccCCCccCCCCCC--cccccccccccccCCCcc
Q 008252 186 IEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSLAV 263 (572)
Q Consensus 186 ~~g~~~~~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~~~L~~~Gl~l~~~~~~--~~tvGG~v~~~~~G~~~~ 263 (572)
+.|+++|..+-||++|.+||+|..+|+-.+.++|++|+.+.++.++|.++|+++|.+.+. .+.|||.+++|++|..-.
T Consensus 125 LVGgSVPvfDEiVlsl~~mNKi~sfDevsGil~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrll 204 (511)
T KOG1232|consen 125 LVGGSVPVFDEIVLSLGLMNKILSFDEVSGILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLL 204 (511)
T ss_pred cccCcccchHHHhhhhhhhccccccccccceEEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEE
Confidence 999999987889999999999999999999999999999999999999999999998876 699999999999999999
Q ss_pred ccccccceeeeEEEEeeCCcEEEcccccccCcCCccchhhhhcCCCCeEEEEEEEEeeeccccceEEEEEecCCHHHHHH
Q 008252 264 RYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAAD 343 (572)
Q Consensus 264 ~yG~~~D~v~~~~vV~~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~~~~~~f~~~~~a~~ 343 (572)
+||...-+|+++|+|+|+|+++......+|+.+|||+-++|+||+|++||||++++-+.|.|+....+++..+++++...
T Consensus 205 RYGsLHgsvLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~kpksvn~af~gi~sf~~v~k 284 (511)
T KOG1232|consen 205 RYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPPKPKSVNVAFIGIESFDDVQK 284 (511)
T ss_pred EecccccceeeeEEEcCCCchhhhhhhhcccCccccchhheecCCceeeEEeeEEEeecCCCcceeEEEEccccHHHHHH
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHc-CCceeeeeeccHHHHHHHHhhcC-CCCC---CCC-ceEEEEecChhhHHHH--HHHHHHHhhhcCcceEEE
Q 008252 344 VAIATMLS-GIQVSRVELLDEVQVRAVNIANG-KNLP---ELP-TLMFEFIGTQAYSHEQ--TLIVQKIVSEHNGTDFIF 415 (572)
Q Consensus 344 ~~~~~~~~-~~~~~~~e~~d~~~~~~~~~~~~-~~~~---~~~-~l~~~~~g~~~~~~~~--~~~~~~i~~~~~g~~~~~ 415 (572)
++.+..+. +-..+++|+||...+.....+.+ ...| +.| .+++|-.|++...+++ .+.+.+.+.+.-..|-+.
T Consensus 285 ~fv~Aks~L~EILSafElmD~~s~~~~~~~l~~l~~pl~~~~pFyiLiETsGSn~dhD~eKl~afl~d~lek~lIsDGv~ 364 (511)
T KOG1232|consen 285 VFVEAKSNLTEILSAFELMDNASMELVLEYLKDLHFPLEDEHPFYILIETSGSNKDHDEEKLTAFLEDCLEKGLISDGVL 364 (511)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHhccCCCCccCCCceEEEEEecCCCccccHHHHHHHHHHhhhhccccccee
Confidence 77654332 23568999999988766544333 2222 233 5678888886544433 356677777776777889
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeecchhHHHHHHHHHHHhccCCcE--EEEEEEecCCceEEEEeeC
Q 008252 416 AEDPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLI--CTVIAHAGDGNFHTVILFD 493 (572)
Q Consensus 416 ~~~~~~~~~lw~~R~~~~~~~~~~~~~~~~~~~D~~vP~s~l~e~l~~~~~~~~~~~~~--~~~~gH~gdG~~h~~i~~~ 493 (572)
+.++.+...+|+.|+.+..+..... .....|+.+|+..+-++++.+++.+...++. .+-|||+||||+|.++...
T Consensus 365 a~d~~~~~~lW~~Re~ip~a~~~~g---~vyKyDvSLpL~d~Y~lvn~~~eRl~~~~l~~d~~gyGHlGDgNlHLNia~~ 441 (511)
T KOG1232|consen 365 AQDEAEAQKLWKIRESIPEALQKAG---GVYKYDVSLPLEDLYNLVNVMKERLGEAALVGDIVGYGHLGDGNLHLNIAVR 441 (511)
T ss_pred cCCHHHHHHHHHHHhccHHHHHhcC---CEEEeeccccHHHHHHHHHHHHHhhhhhhhhhcccccccccCCceeEeeeHH
Confidence 9999999999999988776654322 2468899999999999999999999876554 4779999999999998743
Q ss_pred CCCHHHHHHHH-HHHHHHHHHHHhcCCeEEeccccccccHHHHHHhhCHHHHHHHHHHHHhcCCCCCccCCCcc
Q 008252 494 PSKEEDRQEAE-RLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLI 566 (572)
Q Consensus 494 ~~~~~~~~~~~-~~~~~l~~~~~~~gG~~s~ehGiG~~k~~~l~~~~g~~~~~~~~~lK~~~DP~gIlNPGk~~ 566 (572)
+.-.+.+ .+.-.+++-+.+++|++|+|||+|..|.+|+--...|+.+.+|+.||..|||||||||-|++
T Consensus 442 ----efn~~iek~lePfvYE~vs~~~GSISAEHGiG~lKk~~~~ysKspe~i~lmk~lKn~~DPngILnPYK~i 511 (511)
T KOG1232|consen 442 ----EFNKEIEKLLEPFVYEWVSKHKGSISAEHGIGFLKKPYLHYSKSPEEILLMKDLKNLFDPNGILNPYKYI 511 (511)
T ss_pred ----HHhHHHHHhhhhHHHHHHHhcCCceeccccccccccCccccCCCHHHHHHHHHHHhhcCCcccCCccccC
Confidence 2112233 34567788899999999999999999999998888999999999999999999999999975
No 7
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=100.00 E-value=9e-46 Score=369.00 Aligned_cols=444 Identities=25% Similarity=0.386 Sum_probs=330.4
Q ss_pred CcHHHHHHHHHhcCCCeeeCh--hhhhh--ccCCCCc-----cccCCCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEEC
Q 008252 111 IPQELVDELKAICQDDMTMDY--EERYI--HGKPQNS-----FHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYG 181 (572)
Q Consensus 111 ~~~~~~~~L~~~lg~~~~~~~--~~~~~--~~~~~~~-----~~~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~G 181 (572)
.+++++..|++ .++.... .+++. ||+..+. -.++...|+.||.|+..+||.++|+.|.+|++-++|.|
T Consensus 115 eNedflh~Lke---t~isyS~Ea~dRl~R~HGhtlhdi~~Lregkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiG 191 (613)
T KOG1233|consen 115 ENEDFLHFLKE---TKISYSNEARDRLMRGHGHTLHDIINLREGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIG 191 (613)
T ss_pred cchHHHHHHHh---ccCccchhHHHHHHhhcCchHHHHHHHhcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeC
Confidence 45677888875 2332222 23332 3332111 12345689999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCC-C---cEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHHHHHHccCCCccCCCCCC--cccccccccc
Q 008252 182 GATSIEGHTLSPN-G---GVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP--GATIGGMCAT 255 (572)
Q Consensus 182 gG~s~~g~~~~~~-~---gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~~~L~~~Gl~l~~~~~~--~~tvGG~v~~ 255 (572)
||+|+.+.-..+. . -+.+|++.||+|+++|.++.|+.+|+|+.-.+|.+.|.+.|+...+.|.+ -+|+|||+++
T Consensus 192 GGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsT 271 (613)
T KOG1233|consen 192 GGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCRAEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVST 271 (613)
T ss_pred CcccccccccCCcccceeEEEecHHhhhheeEeccccceEEEecCcchHHHHHHHhhcCcccCCCCCceeeecccceeee
Confidence 9999986655442 2 25578999999999999999999999999999999999999997776654 5999999999
Q ss_pred cccCCCccccccccceeeeEEEEeeCCcEEEcccccccCcCCccchhhhhcCCCCeEEEEEEEEeeeccccceEEEEEec
Q 008252 256 RCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNF 335 (572)
Q Consensus 256 ~~~G~~~~~yG~~~D~v~~~~vV~~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~~~~~~f 335 (572)
.++|..-..||.+.|.|+-+++|+|.|.+.+.... ..-+.|||+.+.+.||+||||||||+|+|++|+|+......+.|
T Consensus 272 RASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~-PRmS~GPDihh~IlGSEGTLGVitEvtiKirPiPe~~ryGS~aF 350 (613)
T KOG1233|consen 272 RASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQV-PRMSSGPDIHHIILGSEGTLGVITEVTIKIRPIPEVKRYGSFAF 350 (613)
T ss_pred ccccccccccCChhHheEEEEeecCcchhhhhhcC-CcccCCCCcceEEeccCcceeEEEEEEEEEeechhhhhcCcccc
Confidence 99999999999999999999999999998775443 34568999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCceeeeeeccHHHHHH---------------HHhhcCC---CCCC-----CCceEEEEecChh
Q 008252 336 PTIKDAADVAIATMLSGIQVSRVELLDEVQVRA---------------VNIANGK---NLPE-----LPTLMFEFIGTQA 392 (572)
Q Consensus 336 ~~~~~a~~~~~~~~~~~~~~~~~e~~d~~~~~~---------------~~~~~~~---~~~~-----~~~l~~~~~g~~~ 392 (572)
|++++...+++++....-.|..+++||..++.. ....... .|.. .-...+-|+|+.+
T Consensus 351 PNFEqGV~f~REvA~qRCqPAS~RLMDN~QF~fGqALKp~~~Swwas~~d~~kk~YiTswKGfd~nqicaATllfEGdre 430 (613)
T KOG1233|consen 351 PNFEQGVNFFREVAIQRCQPASLRLMDNDQFVFGQALKPASDSWWASLKDSVKKMYITSWKGFDVNQICAATLLFEGDRE 430 (613)
T ss_pred CcHHHHHHHHHHHHHHhcCchheeeecccceecccccCcchhhHHHHHHHHHhhheeecccCcCHhhhhhhhheecccHH
Confidence 999999999999888888999999998654211 0000011 1111 0011234678988
Q ss_pred hHHHHHHHHHHHhhhcCcceEEEcCCHHHHHH-----HHHHHHHHHHHHHhcCCCcceeeeeeeecchhHHHHHHHHHHH
Q 008252 393 YSHEQTLIVQKIVSEHNGTDFIFAEDPEAKKE-----LWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKE 467 (572)
Q Consensus 393 ~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~-----lw~~R~~~~~~~~~~~~~~~~~~~D~~vP~s~l~e~l~~~~~~ 467 (572)
++..+.+++.+|+.++.|... ..+..++.. +=.+|. +.+......-.++..|||++...+.+-+++.
T Consensus 431 ~V~qhE~~~y~iAekF~G~~a--G~~NGqrGY~LTfvIAYiRD------lgl~~gvlgESFETSvPWDrv~~LCRnVKer 502 (613)
T KOG1233|consen 431 EVDQHEERLYKIAEKFHGVVA--GAENGQRGYRLTFVIAYIRD------LGLNHGVLGESFETSVPWDRVLSLCRNVKER 502 (613)
T ss_pred HHHHHHHHHHHHHHHhCCccc--cccccccceEEEEeHHHHHh------hcccccchhhcccccCCHHHHHHHHHHHHHH
Confidence 888888888899888776421 111111111 111222 1222222223668899999998888877766
Q ss_pred hc----cCCcE------EEEEEEecCC-ceEEEEeeCCCC-HHHHHHHHHHHHHHHHHHHhcCCeEEeccccccccHHHH
Q 008252 468 LD----ASPLI------CTVIAHAGDG-NFHTVILFDPSK-EEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYL 535 (572)
Q Consensus 468 ~~----~~~~~------~~~~gH~gdG-~~h~~i~~~~~~-~~~~~~~~~~~~~l~~~~~~~gG~~s~ehGiG~~k~~~l 535 (572)
+. +.++. |.+.--...| ++++.+.|+... .+-.+-.+++.....+.+++.||++|++||+|..+++|+
T Consensus 503 ~~rEck~~gv~~~~~s~CRVTQtYDAGACiYFYFgFn~rg~~dplevfe~iE~aARdEIlacGGSlSHHHGVGKiRkqW~ 582 (613)
T KOG1233|consen 503 MKRECKAQGVTHPVLSNCRVTQTYDAGACIYFYFGFNARGLKDPLEVFERIETAARDEILACGGSLSHHHGVGKIRKQWM 582 (613)
T ss_pred HHHHHHhcCCCcccccceeEEEEecCceEEEEEEeeccccCCchHHHHHHHHHHhHHHHHhcCCcccccccchHHHHHHH
Confidence 53 33332 3333333334 455566666533 222344566667777899999999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHHhcCCCCCccCCCcc
Q 008252 536 EKELGTGALETMKRIKVALDPNNIMNPGKLI 566 (572)
Q Consensus 536 ~~~~g~~~~~~~~~lK~~~DP~gIlNPGk~~ 566 (572)
....+.....+++++|+.+||+|||.-++++
T Consensus 583 ~~~~~~vG~~llka~K~~lDP~NIFa~~NLl 613 (613)
T KOG1233|consen 583 LTTNGAVGIALLKAIKSELDPANIFASANLL 613 (613)
T ss_pred HhhhhhHhHHHHHHHHHhcChhhhccccccC
Confidence 9999988999999999999999999988764
No 8
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-44 Score=384.61 Aligned_cols=426 Identities=19% Similarity=0.217 Sum_probs=328.5
Q ss_pred HHHHHHHHHhcCC-CeeeChhhhhhccCCCCccccCCCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCC
Q 008252 113 QELVDELKAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191 (572)
Q Consensus 113 ~~~~~~L~~~lg~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~ 191 (572)
++++++|++++|. ++.++...+..|.+++. . ..+.|.+||+|.|++||+++|++|+++++||+|+||||++.|++.
T Consensus 3 ~~li~~L~~IvG~~~Vltd~~~l~~Y~~D~r-~--~~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAv 79 (564)
T PRK11183 3 KALINELTRIVGSSHVLTDPAKTERYRKGFR-S--GQGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGST 79 (564)
T ss_pred HHHHHHHHHhcCcccEecCHHHHHHhccCcc-c--cCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcc
Confidence 4678999999995 78888887777766532 2 235899999999999999999999999999999999999999999
Q ss_pred CCC-----CcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHHHHHHccCCCccCCCCC---CcccccccccccccCCCcc
Q 008252 192 SPN-----GGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPG---PGATIGGMCATRCSGSLAV 263 (572)
Q Consensus 192 ~~~-----~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~~~L~~~Gl~l~~~~~---~~~tvGG~v~~~~~G~~~~ 263 (572)
+.. ++|+|||++||+|.++| ++.+++||||+++.+|+++|+++|+.++.+++ +++||||++++|++|....
T Consensus 80 P~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePGVtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vl 158 (564)
T PRK11183 80 PNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPGTTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQ 158 (564)
T ss_pred cCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCCcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhhe
Confidence 853 37999999999999999 56789999999999999999999998776543 3689999999999999999
Q ss_pred ccccccceeeeEEEEeeCCcE-------EEcccccc--c---CcCCc---------------------------------
Q 008252 264 RYGTMRDNVINLKVVLANGDV-------VKTASRAR--K---SAAGY--------------------------------- 298 (572)
Q Consensus 264 ~yG~~~D~v~~~~vV~~dG~i-------~~~~~~~~--~---~~~g~--------------------------------- 298 (572)
+||.+.|+++. ++|++||++ ++.+.... . ...||
T Consensus 159 Rgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfn 237 (564)
T PRK11183 159 RGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFN 237 (564)
T ss_pred Ecchhhhhhhh-hEECCCCcEEEeeccCcccCCCHHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCccccc
Confidence 99999999999 999999999 76665442 1 34678
Q ss_pred -cchhhh--hcCCCCeEEEEEEEEeeeccccceEEEEEecCCHHHHHHHHHHHHHc-CCceeeeeeccHHHHHHHHhhcC
Q 008252 299 -DLTRLI--IGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLS-GIQVSRVELLDEVQVRAVNIANG 374 (572)
Q Consensus 299 -dl~~~~--~Gs~G~lGIIt~~tlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~-~~~~~~~e~~d~~~~~~~~~~~~ 374 (572)
|+.+++ .||+|+|||| +++|+++|.|+...++++.|++.+++.+..+.++.. +..|.+.|+|++..++..+.+..
T Consensus 238 aDl~~LfeasGseGkLgV~-avrLdtfp~p~~~~vf~ig~n~~~~~~~~rr~il~~~~~lP~a~Eym~r~~~d~~~~ygk 316 (564)
T PRK11183 238 ADPRRLFEASGCAGKLAVF-AVRLDTFPAEKNTQVFYIGTNDPAVLTEIRRHILANFKNLPVAGEYMHRDAFDIAEKYGK 316 (564)
T ss_pred CCHHHHhhccCCCceEEEE-EEEeccccCCCcceEEEEeCCCHHHHHHHHHHHHHhCCCCceeEeecCHHHHHHHHHhCC
Confidence 999999 9999999999 999999999999999999999999999999988877 88999999999887766554321
Q ss_pred C-----------------------------------------------CCCC-CC------------ceEEEEecChhhH
Q 008252 375 K-----------------------------------------------NLPE-LP------------TLMFEFIGTQAYS 394 (572)
Q Consensus 375 ~-----------------------------------------------~~~~-~~------------~l~~~~~g~~~~~ 394 (572)
. -+|. .| .|++...+. .+
T Consensus 317 d~~~~i~~~gt~~~p~~f~~k~~~d~~~~~~~~~~~~~~d~~~q~~~~~~p~~lp~r~~~~r~~y~hhl~lk~~~~--~~ 394 (564)
T PRK11183 317 DTFLMIDKLGTDKLPKLFALKGRVDAFLEKVPFLPPHFTDRVMQALSKLFPSHLPKRMKDYRDKYEHHLLLKMSGD--GI 394 (564)
T ss_pred ccEEehhhhCchhHHHHHhhHHHHHHHHHhcCCCCCCCcHHHHHHHHhhChhhcCHHHHHHHHHhhhheeeeecCc--cH
Confidence 0 0010 01 145555443 23
Q ss_pred HHHHHHHHHHhhhcCcceEEEcCCHHHHHHHHHHHHHHHHHHH---hc-CCCcce-eeeeeeecchhHHHHHHHHHHHhc
Q 008252 395 HEQTLIVQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACF---AM-EPSFEA-MISDVCVPLSCLAELISRSKKELD 469 (572)
Q Consensus 395 ~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~lw~~R~~~~~~~~---~~-~~~~~~-~~~D~~vP~s~l~e~l~~~~~~~~ 469 (572)
++..+.+++.+....|. .|..+++|...-...|..+..+.. +. ..+... +..|+++|.+. .+|++.+-+.++
T Consensus 395 ~e~~~~l~~~f~~~~g~--~f~c~~~e~~~a~lhrf~~a~aa~ry~~~~~~~~~~i~~ldial~rn~-~~w~e~lp~~~~ 471 (564)
T PRK11183 395 EEARAYLKEYFKSAEGD--FFECTPEEGKKAFLHRFAAAGAAIRYRAVHRDEVEDILALDIALRRND-RDWFEHLPPEID 471 (564)
T ss_pred HHHHHHHHHHhhhcCCC--eEeeCHHHHHHHHHHHHHhhhhHHHHHHhhhccccceeeEEeeecCCc-cchHHhCCHHHh
Confidence 34445566666665553 356677777777777765443221 11 112222 47799998766 566666666666
Q ss_pred cCCcEEEEEEEecCCceEEEEeeCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEeccccccccHHHHHHhhCHHHHHHHHH
Q 008252 470 ASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKR 549 (572)
Q Consensus 470 ~~~~~~~~~gH~gdG~~h~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~gG~~s~ehGiG~~k~~~l~~~~g~~~~~~~~~ 549 (572)
..-..-..+||+..-.+|.-+++..... +.++.++|.+..-+.|..+.+||.+|... .+-..+++
T Consensus 472 ~~~~~~~yyghf~chv~hqdyi~kkg~d-----~~~~~~~m~~~l~~rga~ypaehnvghly----------~a~~~l~~ 536 (564)
T PRK11183 472 DQLVHKLYYGHFFCHVFHQDYIVKKGVD-----VHALKHEMLELLDARGAEYPAEHNVGHLY----------KAKPALKK 536 (564)
T ss_pred hhhhhheeccccceecchhhhhhccCCC-----HHHHHHHHHHHHHhcCCcCCcccccCccc----------cCChHHHH
Confidence 5555556688987666776555543321 34677788888889999999999999862 12245667
Q ss_pred HHHhcCCCCCccCCC
Q 008252 550 IKVALDPNNIMNPGK 564 (572)
Q Consensus 550 lK~~~DP~gIlNPGk 564 (572)
.-+.+||.|-||||-
T Consensus 537 ~y~~~dptn~~npgi 551 (564)
T PRK11183 537 FYRELDPTNSFNPGI 551 (564)
T ss_pred HHHhcCCccCCCCcc
Confidence 788999999999994
No 9
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=1.1e-42 Score=376.58 Aligned_cols=435 Identities=17% Similarity=0.201 Sum_probs=295.2
Q ss_pred cCCCeeeChhhhhhccCCCCccccCCCCCCEEEEcCCHHHHHHHHHHHH--hCCCCEEEECCCCCCCCCCCCCCCcEEEE
Q 008252 123 CQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCD--KHKVPIIPYGGATSIEGHTLSPNGGVCID 200 (572)
Q Consensus 123 lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~eeV~~iv~~a~--~~~~~v~~~GgG~s~~g~~~~~~~gvvId 200 (572)
++.++.++..+...+++++....+ ..|.+|++|+|++||+++|++|+ +++++|.++|+|||+.|.+.+ ++|++||
T Consensus 39 ~~~~v~~d~~~~~~~s~d~g~~~~--~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~-~~GivId 115 (525)
T PLN02441 39 LDGHLSFDPVSTASASKDFGNLVH--SLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQA-PGGVVVD 115 (525)
T ss_pred cCceEEeCHHHHHHHhcCcccccC--CCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccC-CCeEEEE
Confidence 445677776666556665554433 48999999999999999999997 679999999999999988876 4799999
Q ss_pred cCCCCC------cEEeccCCCeEEEcCCCCHHHHHHHHccCCCccCCCCC-CcccccccccccccCCCccccccccceee
Q 008252 201 LSLMKS------VKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPG-PGATIGGMCATRCSGSLAVRYGTMRDNVI 273 (572)
Q Consensus 201 l~~mn~------i~~~~~~~~~v~v~aGv~~~~L~~~L~~~Gl~l~~~~~-~~~tvGG~v~~~~~G~~~~~yG~~~D~v~ 273 (572)
|++||+ ++.++.+..+|+|++|++|.++.+++.++|++.+..+. ...||||+++++|.|..+.+||...|+|+
T Consensus 116 ms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~GlaP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl 195 (525)
T PLN02441 116 MRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVL 195 (525)
T ss_pred CCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCccCCccccCceEEeEEcCCCCccccccccCcHHHhEE
Confidence 999999 67788889999999999999999999999987554333 36999999999988888999999999999
Q ss_pred eEEEEeeCCcEEEcccccccCcCCccchhhhhcCCCCeEEEEEEEEeeeccccceEEEEEecCCHHHHHHHHHHHHHcCC
Q 008252 274 NLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGI 353 (572)
Q Consensus 274 ~~~vV~~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~ 353 (572)
+++||++||++++++.. .++||||+++|++|+|||||++|||++|.|+...+..+.|++++++.+....+.. +.
T Consensus 196 ~leVVtadGevv~~s~~-----~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~li~-~~ 269 (525)
T PLN02441 196 ELDVVTGKGEVVTCSPT-----QNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERLIS-RP 269 (525)
T ss_pred EEEEEeCCceEEEeCCC-----CChhHHHhhccCCCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHHHh-cC
Confidence 99999999999998653 4689999999999999999999999999999888888889999999988877665 22
Q ss_pred ceeeeeeccHHHH-------HHHHh-hcC-------CCCCCCCceEEEEecChhh----HHHHHHHHHHHhhhcCc-ceE
Q 008252 354 QVSRVELLDEVQV-------RAVNI-ANG-------KNLPELPTLMFEFIGTQAY----SHEQTLIVQKIVSEHNG-TDF 413 (572)
Q Consensus 354 ~~~~~e~~d~~~~-------~~~~~-~~~-------~~~~~~~~l~~~~~g~~~~----~~~~~~~~~~i~~~~~g-~~~ 413 (572)
.+..+|+++...+ ..+.. ... ..+.....++..++-...+ .....+.++++++..+- ...
T Consensus 270 ~~~~~d~veg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~le~~~~~~~~~~~~~~~~~~~ll~~L~~~~~~ 349 (525)
T PLN02441 270 PENSFDYVEGFVIVNRNGLINNWRSSFFSPSDPVRASSLPSDGGVLYCLEVAKYYDEDTSDTVDQEVESLLKRLSFIPGL 349 (525)
T ss_pred CCCCcceEeEEEEeCCCCceeeeecccCCccccchhhccccCCceEEEEEEEEeeCCCCccchhhHHHHHHhhcCCCCCC
Confidence 2333444332110 00000 000 0111111222222211111 10011234445554431 113
Q ss_pred EEcCCHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeecchhHHHHHHHHHHHhccCCcE--EEEE----EE-------
Q 008252 414 IFAEDPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLI--CTVI----AH------- 480 (572)
Q Consensus 414 ~~~~~~~~~~~lw~~R~~~~~~~~~~~~~~~~~~~D~~vP~s~l~e~l~~~~~~~~~~~~~--~~~~----gH------- 480 (572)
.+..+..-.+-+-..+...............+.+.++.||-+++.++.+.+.+.+-..... ..+| ..
T Consensus 350 ~~~~d~~y~~fl~rv~~~e~~lr~~G~W~~phPWlnlfvp~s~i~~f~~~v~~~i~~~~~~G~~liyP~~~~~~~~~~s~ 429 (525)
T PLN02441 350 LFTTDVSYVDFLDRVHVEELKLRSKGLWEVPHPWLNLFVPKSRIADFDDGVFKGILLDGTNGPILVYPLNRSKWDNRTSA 429 (525)
T ss_pred ceecccCHHHHHHhhhhHHHHHhhcCCcCCCCchhheeCcHHHHHHHHHHHHhhcccccCCCeEEEEecccccCCCCCcc
Confidence 4444433333332222111110001111233568899999999999999887776543221 1112 01
Q ss_pred -ecCCc-eEEEEeeCCCC--HHHHHHHHHHHHHHHHHHHhcCCeEEeccccccccHHHHHHhhCHHHHHHHHHHHHhcCC
Q 008252 481 -AGDGN-FHTVILFDPSK--EEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDP 556 (572)
Q Consensus 481 -~gdG~-~h~~i~~~~~~--~~~~~~~~~~~~~l~~~~~~~gG~~s~ehGiG~~k~~~l~~~~g~~~~~~~~~lK~~~DP 556 (572)
.-++. ++.+-+...+. +...++..+.+++|++.+.+.|+.+..- =.+..-.+.+.++|| ..|+.+.+.|+.|||
T Consensus 430 ~~P~~~~~y~v~~l~~~~p~~~~~~~~~~~n~~i~~~~~~~g~~~k~Y-l~~~~~~~~W~~HfG-~~w~~f~~~K~~yDP 507 (525)
T PLN02441 430 VIPDEDIFYLVALLRSALPSGDDLEHLLAQNKEILRFCEKAGIGVKQY-LPHYTTQEEWKRHFG-PKWETFVRRKAKFDP 507 (525)
T ss_pred ccCCCCeEEEEEEcCCCCCCcccHHHHHHHHHHHHHHHHHcCCceEEc-CCCCCCHHHHHHHhc-chHHHHHHHHhhCCc
Confidence 12233 33322222322 2366777888999999999888843221 111233445577899 489999999999999
Q ss_pred CCCccCC-CccCC
Q 008252 557 NNIMNPG-KLIPP 568 (572)
Q Consensus 557 ~gIlNPG-k~~~~ 568 (572)
++||+|| ++|++
T Consensus 508 ~~iL~pgq~if~~ 520 (525)
T PLN02441 508 LAILSPGQRIFNR 520 (525)
T ss_pred hhhcCCCCccCCC
Confidence 9999999 55553
No 10
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=100.00 E-value=7.7e-44 Score=370.23 Aligned_cols=345 Identities=21% Similarity=0.296 Sum_probs=257.1
Q ss_pred CHHHHHHHHHHHHhCCCCEEEECCCCC-CCCCCCCCCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHHHHHHccCCC
Q 008252 159 SEDEVSKIVKCCDKHKVPIIPYGGATS-IEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGL 237 (572)
Q Consensus 159 s~eeV~~iv~~a~~~~~~v~~~GgG~s-~~g~~~~~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~~~L~~~Gl 237 (572)
.++||+++|++|+++++||+|+||||+ ..|. +. ++++|||++||+|+++|+++.+|+||||+++.+|+++|.++|+
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~--~~-~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G~ 79 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGR--AL-AGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAGQ 79 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCC--CC-CCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcCC
Confidence 478999999999999999999999975 4444 22 4689999999999999999999999999999999999999999
Q ss_pred ccCCCCC---CcccccccccccccCCCccccccccceeeeEEEEeeCCcEEEcccccccCcCCccchhhhhcCCCCeEEE
Q 008252 238 FFPLDPG---PGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGII 314 (572)
Q Consensus 238 ~l~~~~~---~~~tvGG~v~~~~~G~~~~~yG~~~D~v~~~~vV~~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGII 314 (572)
++|+++. ..+||||++++|++|+.+.+||.++|+|+++++|++||++++++.+..|+.+||||+|+++||+|+||||
T Consensus 80 ~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~GtLGVi 159 (352)
T PRK11282 80 MLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSLGTLGVL 159 (352)
T ss_pred eeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCCchhhhh
Confidence 9887653 3489999999999999999999999999999999999999999887778889999999999999999999
Q ss_pred EEEEEeeeccccceEEEEEecCCHHHHHHHHHHHHHcCCceeeeeeccHHHHHHHHhhcCCCCCCCCceEEEEecChhhH
Q 008252 315 TEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFEFIGTQAYS 394 (572)
Q Consensus 315 t~~tlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~ 394 (572)
|++|||++|.|+......+.++ .+++.+.+.+++.+...+...++. + ..+++.+.|.+..+
T Consensus 160 tevtlkl~P~p~~~~t~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~----------------~--~~l~~rl~g~~~~v 220 (352)
T PRK11282 160 LEVSLKVLPRPRAELTLRLEMD-AAEALRKLNEWGGQPLPISASCWD----------------G--GTLYLRLSGAEGAV 220 (352)
T ss_pred eEEEEEEEecCceEEEEEEecC-HHHHHHHHHHHhcCCCCCchhhhc----------------C--CeeEEEEeCcHHHH
Confidence 9999999999987666555554 567777777776666555543321 1 14788899999888
Q ss_pred HHHHHHHHHHhhhcCcceEEEcCCHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeecchhHHHHHHHHHHHhccCCcE
Q 008252 395 HEQTLIVQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLI 474 (572)
Q Consensus 395 ~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~lw~~R~~~~~~~~~~~~~~~~~~~D~~vP~s~l~e~l~~~~~~~~~~~~~ 474 (572)
+++.+.+.. . ... .++. .+|...++..+.... +. .....+++|++..+.++.. .
T Consensus 221 ~~~~~~~~~-------~---~~~-~~~~-~~W~~~r~~~~~~~~--~~--~~~~ri~~~p~~~~~~~~~----------~ 274 (352)
T PRK11282 221 KAARERLGG-------E---ELD-DAEA-AFWQQLREQTLPFFD--DG--RPLWRLSLPSTAPPLDLPG----------E 274 (352)
T ss_pred HHHHHHhcc-------c---ccC-chhh-hHHHHHHhcccCcCC--CC--CeEEEEEcCCCCccccccc----------c
Confidence 776554421 1 111 2223 688765544322111 11 2356788999988777441 0
Q ss_pred EEEEEEecCCceEEEEeeCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEeccccccccHHHHHHhhCHHHHHHHHHHHHhc
Q 008252 475 CTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVAL 554 (572)
Q Consensus 475 ~~~~gH~gdG~~h~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~gG~~s~ehGiG~~k~~~l~~~~g~~~~~~~~~lK~~~ 554 (572)
.+.+.+-|.. .+ . .++ ....+.+.+.+.||..+-.++-...+ +-+ ..+.+....+|++||++|
T Consensus 275 --~~~~~~gg~~---w~-~-~~~--------~~~~~r~~~~~~gG~~tl~~a~~~~~-~~~-~~~~~~~~~l~~~lK~~f 337 (352)
T PRK11282 275 --QLIDWGGAQR---WL-K-SDA--------DAAAIRAAAAAAGGHATLFRAGDRAG-PVF-HPLPAPLLRIHRRLKQAF 337 (352)
T ss_pred --eEEEcccceE---Ee-c-Ccc--------cHHHHHHHHHhcCCEEEEEECCcccc-cCC-CCCCHHHHHHHHHHHHhc
Confidence 0233433331 11 1 111 11346667888999987766543321 111 123455689999999999
Q ss_pred CCCCCccCCCccCC
Q 008252 555 DPNNIMNPGKLIPP 568 (572)
Q Consensus 555 DP~gIlNPGk~~~~ 568 (572)
||++|||||+|+..
T Consensus 338 DP~~ilnpgr~~~~ 351 (352)
T PRK11282 338 DPAGIFNPGRLYAE 351 (352)
T ss_pred CcccCCCCCcCCCC
Confidence 99999999999864
No 11
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=1.5e-35 Score=320.53 Aligned_cols=204 Identities=22% Similarity=0.291 Sum_probs=176.7
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCCCCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHH
Q 008252 148 VNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWME 227 (572)
Q Consensus 148 ~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~ 227 (572)
...|..+++|+|++||+++|+.|++++++|+|+|+|||+.|.+.+ + +.+|||++||+|+++|.++++|+||||+++.+
T Consensus 59 ~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t-~-g~lldL~~ln~Vl~vD~~~~tVtV~AG~~l~~ 136 (541)
T TIGR01676 59 EVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLS-R-AGMVNLALMDKVLEVDEEKKRVRVQAGIRVQQ 136 (541)
T ss_pred ccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccC-C-CeEEEhhhCCCCEEEcCCCCEEEEcCCCCHHH
Confidence 357999999999999999999999999999999999999887765 3 45799999999999999999999999999999
Q ss_pred HHHHHccCCCccCCCCCC-cccccccccccccCCCccccccccceeeeEEEEeeCCcEEEcccccccCcCCccchhhhhc
Q 008252 228 LNEYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIG 306 (572)
Q Consensus 228 L~~~L~~~Gl~l~~~~~~-~~tvGG~v~~~~~G~~~~~yG~~~D~v~~~~vV~~dG~i~~~~~~~~~~~~g~dl~~~~~G 306 (572)
|.+.|.++|+.++..+.. .+||||++++|+||+ ..+||.++|+|+++++|++||++++++.. .++|||++++|
T Consensus 137 L~~~L~~~Glal~n~gsi~~~TIGGaiatgtHGt-g~~~G~l~d~V~~l~lVta~G~vv~~s~~-----~~pdLF~Aarg 210 (541)
T TIGR01676 137 LVDAIKEYGITLQNFASIREQQIGGIIQVGAHGT-GAKLPPIDEQVIAMKLVTPAKGTIEISKD-----KDPELFFLARC 210 (541)
T ss_pred HHHHHHHcCCEeccCCCCCCceEccccccCCcCC-CCCCCCHHHhEEEEEEEECCCCEEEECCC-----CCHHHHHHHhc
Confidence 999999999999875554 699999999999999 45899999999999999999999988643 35799999999
Q ss_pred CCCCeEEEEEEEEeeeccccceEEEEEecCCHHHHHHHHHHHHHcCCceeeeeec
Q 008252 307 SEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELL 361 (572)
Q Consensus 307 s~G~lGIIt~~tlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~~~~~e~~ 361 (572)
++|+|||||++|||+.|.+.-.... ...++++..+.+.+++...-....+.+.
T Consensus 211 slG~LGVItevTLr~~Pa~~l~~~~--~~~~~~e~l~~~~~~~~~~~h~~f~wfP 263 (541)
T TIGR01676 211 GLGGLGVVAEVTLQCVERQELVEHT--FISNMKDIKKNHKKFLADNKHVKYLHIP 263 (541)
T ss_pred CCCceEeEEEEEEEEEeccceeEEE--EecCHHHHHHHHHHHHhcCCcEEEEEEc
Confidence 9999999999999999988744332 2366788888877777666555444443
No 12
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=3.5e-35 Score=315.73 Aligned_cols=385 Identities=19% Similarity=0.205 Sum_probs=250.0
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCCCCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHH
Q 008252 148 VNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWME 227 (572)
Q Consensus 148 ~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~ 227 (572)
...|.+|+.|+|++||+++|+.|+++++||+++|+|||+.+... .+|++|||++||+|+++|.++++|+|+||+++.+
T Consensus 12 ~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~--~~gvvIdl~~l~~i~~id~~~~~vtV~aG~~l~~ 89 (438)
T TIGR01678 12 SASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIAC--TDGFLIHLDKMNKVLQFDKEKKQITVEAGIRLYQ 89 (438)
T ss_pred cCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCcc--CCeEEEEhhhcCCceEEcCCCCEEEEcCCCCHHH
Confidence 45799999999999999999999999999999999999976544 4589999999999999999999999999999999
Q ss_pred HHHHHccCCCccCCCCCC-cccccccccccccCCCccccccccceeeeEEEEeeCCcEEEcccccccCcCCccchhhhhc
Q 008252 228 LNEYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIG 306 (572)
Q Consensus 228 L~~~L~~~Gl~l~~~~~~-~~tvGG~v~~~~~G~~~~~yG~~~D~v~~~~vV~~dG~i~~~~~~~~~~~~g~dl~~~~~G 306 (572)
|.++|.++|+++|..+.. .+||||++++|+||. +.+||.++|+|+++++|++||++++++.. .++|+|++.+|
T Consensus 90 L~~~L~~~Gl~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~-----~~~dlf~a~~~ 163 (438)
T TIGR01678 90 LHEQLDEHGYSMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEE-----RNADVFQAARV 163 (438)
T ss_pred HHHHHHHcCCEecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCC-----CChhHHHHHhc
Confidence 999999999999965554 599999999999997 78999999999999999999999998654 36899999999
Q ss_pred CCCCeEEEEEEEEeeeccccceEEEEEecCCHHHHHHHHHHHHHcCCceeeeeecc--HHHHHHHHhhcCCCCCCCCceE
Q 008252 307 SEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLD--EVQVRAVNIANGKNLPELPTLM 384 (572)
Q Consensus 307 s~G~lGIIt~~tlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~~~~~e~~d--~~~~~~~~~~~~~~~~~~~~l~ 384 (572)
++|+|||||++|||+.|..... ......++++.++.+.+...+........+.. ...+...+. ...+.....
T Consensus 164 ~~G~lGIIt~vtl~l~p~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~---~~~~~~~~~- 237 (438)
T TIGR01678 164 SLGCLGIIVTVTIQVVPQFHLQ--ETSFVSTLKELLDNWDSHWKSSEFFRVLWFPYTENVVIWRQNK---TNKAPSSPS- 237 (438)
T ss_pred CCCceEeeEEEEEEEEeccceE--EEEecCCHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEECcc---CCCCccccc-
Confidence 9999999999999999876543 33456778888877766555443332222221 100000000 000000000
Q ss_pred EEEecChhhHHHHHHHHHHHhhhcCcceEEEcCCHHHHHHHHHHHHHH------------HHHHHhcCCCcceeeeeeee
Q 008252 385 FEFIGTQAYSHEQTLIVQKIVSEHNGTDFIFAEDPEAKKELWKMRKEA------------LWACFAMEPSFEAMISDVCV 452 (572)
Q Consensus 385 ~~~~g~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~lw~~R~~~------------~~~~~~~~~~~~~~~~D~~v 452 (572)
-.+.+... .....+.+..+..... ...+.. ++++...... .+..+...=.+..+..+++|
T Consensus 238 ~~~~~~~~-~~~~~~~l~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~f~~~~~Ey~v 309 (438)
T TIGR01678 238 NSFWDYKL-GFFLYEFLLWTSKYLP------CLTPWI-ERFFFWMLYGEKSSTKKESSNLSHKIFTMECRFSQHVQEWGI 309 (438)
T ss_pred chhhhhhH-HHHHHHHHHHHHhhcc------cccHHH-HHHHHHhhcCCccCCCcceecchHHhhcccceeehhceeecc
Confidence 00111100 0000111111110000 000100 1111100000 00111100011123468999
Q ss_pred cchhHHHHHHHHHHHhccC----CcE--EEEEEE--ec---C-----------Cc-eEEEEeeCCCCHHHHHHHHHHHHH
Q 008252 453 PLSCLAELISRSKKELDAS----PLI--CTVIAH--AG---D-----------GN-FHTVILFDPSKEEDRQEAERLNRF 509 (572)
Q Consensus 453 P~s~l~e~l~~~~~~~~~~----~~~--~~~~gH--~g---d-----------G~-~h~~i~~~~~~~~~~~~~~~~~~~ 509 (572)
|.++..++++++++.+++. +.. ..+... .+ | .+ +++ ..|.+-+.. ...+++++.
T Consensus 310 P~~~~~~al~~l~~~~~~~~~~~~~~v~fpiEvR~~~~~~~Dd~wLSp~~~rds~~i~~-~~y~~~~~~--~~~~~~f~~ 386 (438)
T TIGR01678 310 PREKTKEALLELKAMLEAHAKNKEVYAHYPVEVRFTRGTLPDECLLSPCFQVDTCYINA-IMYRPFGKD--VPRLDYFLA 386 (438)
T ss_pred cHHHHHHHHHHHHHHHHhcccccCceEeeeEEEEEeCCCCCCceecCCCCCCceEEEEE-EEccCCCCC--CCHHHHHHH
Confidence 9999999999999998876 221 111111 12 1 11 222 223321100 012356777
Q ss_pred HHHHHHhcCCeEEeccccccc--cHHHHHHhhCHHHHHHHHHHHHhcCCCCCcc
Q 008252 510 MVHTALSMEGTCTGEHGIGTG--KMKYLEKELGTGALETMKRIKVALDPNNIMN 561 (572)
Q Consensus 510 l~~~~~~~gG~~s~ehGiG~~--k~~~l~~~~g~~~~~~~~~lK~~~DP~gIlN 561 (572)
+...+.++||.+ |+|--.. ....+.+.| ..++.+.++++.+||+|+|.
T Consensus 387 ~E~i~~~~gGRP--HWgK~h~~~~~~~l~~~Y--P~~~~F~~vr~~~DP~g~F~ 436 (438)
T TIGR01678 387 YETIMKKFGGKP--HWAKAHNVCKQKDFEEMY--PTLHKFCDIRKKLDPTGVFL 436 (438)
T ss_pred HHHHHHHcCCCC--CchhcccccCHHHHHHHC--cCHHHHHHHHHhhCcccccC
Confidence 778889999999 5553222 234566555 47899999999999999985
No 13
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=2.1e-34 Score=315.77 Aligned_cols=198 Identities=24% Similarity=0.279 Sum_probs=169.5
Q ss_pred cCCCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEEC-CCCCCCCCCCCC--CCcEEEEcCCCCCcEEeccCCCeEEEcCC
Q 008252 146 KAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYG-GATSIEGHTLSP--NGGVCIDLSLMKSVKALHIEDMDVVVEPG 222 (572)
Q Consensus 146 ~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~G-gG~s~~g~~~~~--~~gvvIdl~~mn~i~~~~~~~~~v~v~aG 222 (572)
.....|.+|++|+|++||+++|++|+++++||+++| +||++.+.+... ++|++|||++||+|+++|.++++|+||||
T Consensus 27 ~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVtV~AG 106 (557)
T TIGR01677 27 RSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVTVESG 106 (557)
T ss_pred cccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEEECCC
Confidence 344689999999999999999999999999999995 689987655442 35699999999999999999999999999
Q ss_pred CCHHHHHHHHccCCCccCCCCCC-cccccccccccccCCCc-cccccccceeeeEEEEeeCC------cEEEcccccccC
Q 008252 223 IGWMELNEYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLA-VRYGTMRDNVINLKVVLANG------DVVKTASRARKS 294 (572)
Q Consensus 223 v~~~~L~~~L~~~Gl~l~~~~~~-~~tvGG~v~~~~~G~~~-~~yG~~~D~v~~~~vV~~dG------~i~~~~~~~~~~ 294 (572)
+++.+|.+.|.++|+.++.++.. .+||||++++|+||+.. +.||.++|+|++++||++|| +++++...
T Consensus 107 ~~l~~L~~~L~~~Glal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s~~---- 182 (557)
T TIGR01677 107 MSLRELIVEAEKAGLALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILSEG---- 182 (557)
T ss_pred CcHHHHHHHHHHcCCEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeCCC----
Confidence 99999999999999999988764 68999999999999865 58889999999999999999 77776543
Q ss_pred cCCccchhhhhcCCCCeEEEEEEEEeeeccccceEEEEEecCCHHHHHHHHHHHHH
Q 008252 295 AAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATML 350 (572)
Q Consensus 295 ~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~ 350 (572)
.++|||++++|++|+|||||++|||++|.+... ....+...++..+.+.++..
T Consensus 183 -~~~dLf~a~rgslG~lGVVtevTL~~~P~~~~~--~~~~~~~~~~l~~~~~~~~~ 235 (557)
T TIGR01677 183 -DTPNEFNAAKVSLGVLGVISQVTLALQPMFKRS--VTYTMRDDSDFEDQFVTFGK 235 (557)
T ss_pred -CCHHHHHhhccCCCccEeeeEEEEEEEccccce--EEEEcCCHHHHHHHHHHhhc
Confidence 467999999999999999999999999987733 34456777777665555543
No 14
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=1.9e-33 Score=301.76 Aligned_cols=379 Identities=15% Similarity=0.102 Sum_probs=242.0
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCCCCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHH
Q 008252 148 VNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWME 227 (572)
Q Consensus 148 ~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~ 227 (572)
...|.+|++|+|++||+++|+.|++ ||+++|+|||+++.+. .+|++|||++||+|+++|+++++|+||||+++.+
T Consensus 9 ~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~--~~g~~idl~~l~~i~~~d~~~~~v~v~aG~~l~~ 83 (419)
T TIGR01679 9 VAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLAC--TDGTMISLTGLQGVVDVDQPTGLATVEAGTRLGA 83 (419)
T ss_pred cCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCccc--CCCEEEEhhHcCCceeecCCCCEEEEcCCCCHHH
Confidence 3579999999999999999999974 7999999999976543 4589999999999988999999999999999999
Q ss_pred HHHHHccCCCccCCCCCC-cccccccccccccCCCccccccccceeeeEEEEeeCCcEEEcccccccCcCCccchhhhhc
Q 008252 228 LNEYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIG 306 (572)
Q Consensus 228 L~~~L~~~Gl~l~~~~~~-~~tvGG~v~~~~~G~~~~~yG~~~D~v~~~~vV~~dG~i~~~~~~~~~~~~g~dl~~~~~G 306 (572)
|.++|.++|+.+|+.++. .+||||++++++||+ +.+||.+.|+|++++||++||++++++.. .++|||++++|
T Consensus 84 l~~~L~~~G~~l~~~~~~~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~-----~~~dLf~a~~g 157 (419)
T TIGR01679 84 LGPQLAQRGLGLENQGDIDPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEG-----DDQDMYLAARV 157 (419)
T ss_pred HHHHHHHcCCccccCCCCCCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCC-----CCHHHHHHHHh
Confidence 999999999999976665 689999999999998 56899999999999999999999998654 46899999999
Q ss_pred CCCCeEEEEEEEEeeeccccceEEEEEecCCHHHHHHHHHHHHHcCCceeeeeeccHHHHHHHHhhcCCCCCCCCceEEE
Q 008252 307 SEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPELPTLMFE 386 (572)
Q Consensus 307 s~G~lGIIt~~tlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~~l~~~ 386 (572)
++|+|||||++|||++|.+..... ....+++++.+.+.++.... ..+|+.--..............++.+..-..
T Consensus 158 ~~G~lGVIt~vtl~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 232 (419)
T TIGR01679 158 SLGALGVISQVTLQTVALFRLRRR--DWRRPLAQTLERLDEFVDGH---RHFEFYVFPFAGKALTITMDRSDEQPKPRQR 232 (419)
T ss_pred CCCceEEEEEEEEEeecceEeEEE--EEecCHHHHHHHHHHHHhcC---CeEEEEEecCCCeEEEEECCcCCCccccccc
Confidence 999999999999999998754433 23456777777777665543 2333321000000000000000000000000
Q ss_pred EecChhhHHHHHHHHHHHhhhcCcceEEEcCCHHHHHHHHHHH-----HHHHHHHHhcCCC-cceeeeeeeecchhHHHH
Q 008252 387 FIGTQAYSHEQTLIVQKIVSEHNGTDFIFAEDPEAKKELWKMR-----KEALWACFAMEPS-FEAMISDVCVPLSCLAEL 460 (572)
Q Consensus 387 ~~g~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~lw~~R-----~~~~~~~~~~~~~-~~~~~~D~~vP~s~l~e~ 460 (572)
. ...........+...+...+.. .......+..- ....|......+. ......+++||.++..++
T Consensus 233 ~--~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~q~e~~iP~~~~~~a 303 (419)
T TIGR01679 233 D--VDENFLGGLRLLRQTLRRFPSL-------RPRLNRLMTNMMSSETVVDRAYKVFATQRKVRFNEMEYHLPRENGRKA 303 (419)
T ss_pred c--hhhhHHHHHHHHHHhcccCchh-------HHHHHHHHHhhcCCceeeccceEEecccccceeeEEEEecchhHHHHH
Confidence 0 0000000000000000000000 00000000000 0000000000000 111244889999999999
Q ss_pred HHHHHHHhccCCcE--EEEEEEe-------------cCCc-eEEEEeeCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEec
Q 008252 461 ISRSKKELDASPLI--CTVIAHA-------------GDGN-FHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGE 524 (572)
Q Consensus 461 l~~~~~~~~~~~~~--~~~~gH~-------------gdG~-~h~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~gG~~s~e 524 (572)
++++++.+++++.. ..+.... .++. +.+ ..+... ...++.+++.+.+.++||.+ +
T Consensus 304 l~~i~~~i~~~~~~~~~pve~R~~~ad~~~LS~~~~r~~~~ia~-~~~~~~------~~~~~~~~~e~i~~~~gGRp--H 374 (419)
T TIGR01679 304 LQEVIDLVERRSPPVMFPIEVRFSAPDDSWLSPFYGRPTCSIAV-HQYAGM------DFESYFRAVEPIFRRYAGRP--H 374 (419)
T ss_pred HHHHHHHHHhcCCCccceEEEEEecCCCcccCCCCCCCcEEEEE-EEcCCC------CHHHHHHHHHHHHHHcCCCC--C
Confidence 99999988775432 1111111 1232 222 222221 23567777888899999998 3
Q ss_pred ccc-ccccHHHHHHhhCHHHHHHHHHHHHhcCCCCCccC
Q 008252 525 HGI-GTGKMKYLEKELGTGALETMKRIKVALDPNNIMNP 562 (572)
Q Consensus 525 hGi-G~~k~~~l~~~~g~~~~~~~~~lK~~~DP~gIlNP 562 (572)
.|- .......+.+.|. .++.+.++|+.+||+|+|..
T Consensus 375 wgK~~~l~~~~l~~~YP--~~~~F~~~r~~~DP~g~F~n 411 (419)
T TIGR01679 375 WGKRHYLTAATLRERYP--RWDDFAAVRDDLDPDRRFLN 411 (419)
T ss_pred chhccCCCHHHHHHHCc--CHHHHHHHHHHhCCCCccCC
Confidence 332 1223445555554 68999999999999999854
No 15
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=100.00 E-value=1.6e-32 Score=299.36 Aligned_cols=195 Identities=23% Similarity=0.261 Sum_probs=169.0
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCCCCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHH
Q 008252 148 VNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWME 227 (572)
Q Consensus 148 ~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~ 227 (572)
...|.+++.|+|++||+++|+.|+++++||+++|+|||+.+.... + +.+|||++||+|+++|.+.++|+|+||+++.+
T Consensus 94 ~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~t-d-~glIdL~~l~~Il~vD~e~~~VtV~AG~~l~~ 171 (573)
T PLN02465 94 EVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFS-R-EGMVNLALMDKVLEVDKEKKRVTVQAGARVQQ 171 (573)
T ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeC-C-CEEEECcCCCCcEEEeCCCCEEEEccCCCHHH
Confidence 358999999999999999999999999999999999999776654 3 44689999999999999999999999999999
Q ss_pred HHHHHccCCCccCCCCCC-cccccccccccccCCCccccccccceeeeEEEEeeCCcEEEcccccccCcCCccchhhhhc
Q 008252 228 LNEYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIG 306 (572)
Q Consensus 228 L~~~L~~~Gl~l~~~~~~-~~tvGG~v~~~~~G~~~~~yG~~~D~v~~~~vV~~dG~i~~~~~~~~~~~~g~dl~~~~~G 306 (572)
|.+.|.++|+.++..+++ .+||||++++|+||+ ..++|.++|+|+++++|+++|+++++... .++|||++.++
T Consensus 172 L~~~L~~~GLal~n~g~I~~~TIGGaIstGtHGt-G~~~g~i~d~V~~l~lVta~G~vv~~s~~-----~~pdLF~aar~ 245 (573)
T PLN02465 172 VVEALRPHGLTLQNYASIREQQIGGFIQVGAHGT-GARIPPIDEQVVSMKLVTPAKGTIELSKE-----DDPELFRLARC 245 (573)
T ss_pred HHHHHHHcCCEeccCCCCCCeeecchhhCCCCCc-CCCcCcHhheEEEEEEEECCCCEEEECCC-----CCHHHHhHhhc
Confidence 999999999999987766 799999999999998 45799999999999999999999987653 35799999999
Q ss_pred CCCCeEEEEEEEEeeeccccceEEEEEecCCHHHHHHHHHHHHHcC
Q 008252 307 SEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAIATMLSG 352 (572)
Q Consensus 307 s~G~lGIIt~~tlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~ 352 (572)
+.|+|||||++||++.|.+.-... ....+.++..+.+.++....
T Consensus 246 glG~lGVIteVTLql~P~~~L~~~--~~~~~~~~~~~~~~~~~~~~ 289 (573)
T PLN02465 246 GLGGLGVVAEVTLQCVPAHRLVEH--TFVSNRKEIKKNHKKWLSEN 289 (573)
T ss_pred cCCCCcEEEEEEEEEEecCceEEE--EEEecHHHHHHHHHHHHHhC
Confidence 999999999999999998764322 22345667777666665544
No 16
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=100.00 E-value=1.3e-34 Score=288.72 Aligned_cols=242 Identities=36% Similarity=0.507 Sum_probs=205.5
Q ss_pred cccceEEEEEecCCHHHHHHHHHHHHHcCCceeeeeeccHHHHHHHHhhcCC--CCCCCCceEEEEecChh-hHHHHHH-
Q 008252 324 IPQHSVVATCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGK--NLPELPTLMFEFIGTQA-YSHEQTL- 399 (572)
Q Consensus 324 ~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~-~~~~~~~- 399 (572)
+|+......+.|++++++.+++.+++..++.|+++|++|...++......+. ..+....+++++.|.+. .++++.+
T Consensus 1 lPe~~~~~~~~f~~~~~a~~~~~~i~~~g~~p~a~el~d~~~~~~~~~~~~~~~~~~~~~~llv~~~g~~~~~~~~~~~~ 80 (248)
T PF02913_consen 1 LPEARATALVFFPSFEDAADAVRAIMQSGIIPSAIELLDSAALKLALEHWGEPLPPEGGAVLLVEFEGSDEEAVEEQLEA 80 (248)
T ss_dssp --SEEEEEEEEESCHHHHHHHHCCCCHHCSSCCECCCCHHHHHHHHHHSEEETSSTTTSEEEEEECCCHHHCCHHHHHHH
T ss_pred CCcceEEEEEEcCCHHHHHHHHHHHHHcCCCceEEeeeCHHHHHHHHhhcCCCccCCcccEEEEEECCCcHHHHHHHHHH
Confidence 4788888999999999999999988888999999999999888877655543 22234478999999884 5555555
Q ss_pred HHHHHhhhcCcceEEEcCCHHHHHHHHHHHHHHHHHHHh--cCCCcceeeeeeeecchhHHHHHHHHHHHhccCCcEEEE
Q 008252 400 IVQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACFA--MEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTV 477 (572)
Q Consensus 400 ~~~~i~~~~~g~~~~~~~~~~~~~~lw~~R~~~~~~~~~--~~~~~~~~~~D~~vP~s~l~e~l~~~~~~~~~~~~~~~~ 477 (572)
.+.++++..++.+..++.+.++..++|..|+...+.... ...+...+..|++||+++++++++.+++.++++++...+
T Consensus 81 ~i~~~~~~~~~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~~~~~dv~vp~~~l~~~~~~~~~~~~~~~~~~~~ 160 (248)
T PF02913_consen 81 EIEEICKKYGGEDVVIADDEEEQERLWAIRRAIMPYLRDAAGRAGPVWDTEDVAVPPSRLPEFLREIRALLREYGLEVCH 160 (248)
T ss_dssp HHHHHHCTCTCCEEEEEHCHHCTSTHHHHHHHHCCGGGCSHCTTEEEEEEEEEESCHHHHHHHHHHHHHHHHHCTEEEEE
T ss_pred HHHHHHhhcCCceeEEeCCHHHHHhhhhhhhhhcccccccccccCCceeeeeecccchhhhhHHHhhhhhhhhccccccc
Confidence 788888888888777777877778999999987762221 233344568899999999999999999999999999999
Q ss_pred EEEecCCceEEEEeeCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEeccccccccHHHHHHhhCHHHHHHHHHHHHhcCCC
Q 008252 478 IAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPN 557 (572)
Q Consensus 478 ~gH~gdG~~h~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~gG~~s~ehGiG~~k~~~l~~~~g~~~~~~~~~lK~~~DP~ 557 (572)
++|+|+|++|++++++..++++.++++++.+.+.+.+.++||++++|||+|..|.+|+.+++++..+++|++||++|||+
T Consensus 161 ~gH~~~g~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~is~eHG~G~~k~~~~~~~~~~~~~~~~~~iK~~~DP~ 240 (248)
T PF02913_consen 161 FGHAGDGNLHLYILFDPRDPEEPERAEALWDELYELVLELGGSISAEHGIGKLKKPYLEEEYGPAALRLMRAIKQAFDPN 240 (248)
T ss_dssp EEEEEECEEEEEEEEETTSHHHHHHHHHHHHHHHHHHHHTT-BBSSSSGGGHHHHHHHCHHCHHHHHHHHHHHHHHH-TT
T ss_pred eEEccCCeEEEEeecccchHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhHHHHHHhcchHHHHHHHHhhhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCc
Q 008252 558 NIMNPGKL 565 (572)
Q Consensus 558 gIlNPGk~ 565 (572)
|||||||+
T Consensus 241 ~ilNPGki 248 (248)
T PF02913_consen 241 GILNPGKI 248 (248)
T ss_dssp S-BSTTG-
T ss_pred cCCCCCCC
Confidence 99999996
No 17
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.95 E-value=1.4e-27 Score=218.39 Aligned_cols=136 Identities=39% Similarity=0.668 Sum_probs=126.6
Q ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCCCCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHHHH
Q 008252 151 PDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNE 230 (572)
Q Consensus 151 p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~~ 230 (572)
|.+|++|+|++||++++++|+++++|+.++|+||++.+.+. .+++++|||++||+|+++|+++++++|+||++|.||++
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~-~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~ 79 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSS-DEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYE 79 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTS-STTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccc-cCCcEEEeeccccccccccccceeEEEeccccchhccc
Confidence 78999999999999999999999999999999999987665 46799999999999999999999999999999999999
Q ss_pred HHccCCCccCCC--CCCcccccccccccccCCCccccccccceeeeEEEEeeCCcEEEc
Q 008252 231 YLEPYGLFFPLD--PGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKT 287 (572)
Q Consensus 231 ~L~~~Gl~l~~~--~~~~~tvGG~v~~~~~G~~~~~yG~~~D~v~~~~vV~~dG~i~~~ 287 (572)
+|.++|+.++.. .+.++|+||++++|++|+.+..||...|+|+++++|++||+++++
T Consensus 80 ~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~~ 138 (139)
T PF01565_consen 80 ALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVRC 138 (139)
T ss_dssp HHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEEE
T ss_pred ccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEEe
Confidence 999999998854 445799999999999999999999999999999999999999986
No 18
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.92 E-value=1.2e-23 Score=215.74 Aligned_cols=175 Identities=24% Similarity=0.281 Sum_probs=153.2
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCCCCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHHH
Q 008252 150 IPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELN 229 (572)
Q Consensus 150 ~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~ 229 (572)
+++-|-+|+|++||.++|+.|++++.++++.|.||+..+-... +|.+|++..||+++++|++..+||||+|+++.+|+
T Consensus 49 ~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ct--dg~lisl~~lnkVv~~dpe~~tvTV~aGirlrQLi 126 (518)
T KOG4730|consen 49 KAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCT--DGLLISLDKLNKVVEFDPELKTVTVQAGIRLRQLI 126 (518)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceec--cccEEEhhhhccceeeCchhceEEeccCcCHHHHH
Confidence 4667889999999999999999999999999999999776654 46999999999999999999999999999999999
Q ss_pred HHHccCCCccCCCCCC-cccccccccccccCCCccccccccceeeeEEEEeeCCcEEEcccccccCcCCccchhhhhcCC
Q 008252 230 EYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSE 308 (572)
Q Consensus 230 ~~L~~~Gl~l~~~~~~-~~tvGG~v~~~~~G~~~~~yG~~~D~v~~~~vV~~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~ 308 (572)
+++.+.|+.+|..+.. ..+|||++++|+||+...-++.....+.-+.++.++|.++.+... ..+++|++..-|.
T Consensus 127 e~~~~~GlsL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e-----~dpe~F~AAkvSL 201 (518)
T KOG4730|consen 127 EELAKLGLSLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEE-----KDPELFNAAKVSL 201 (518)
T ss_pred HHHHhcCccccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEeccc-----CCHHHHhhhhhcc
Confidence 9999999999988776 799999999999998544366666667777777889998877654 3689999999999
Q ss_pred CCeEEEEEEEEeeeccccceEEE
Q 008252 309 GTLGIITEVTLRLQKIPQHSVVA 331 (572)
Q Consensus 309 G~lGIIt~~tlkl~p~p~~~~~~ 331 (572)
|.||||.++||++.|.-+.....
T Consensus 202 G~LGVIs~VTl~~vp~Fk~s~t~ 224 (518)
T KOG4730|consen 202 GVLGVISQVTLSVVPAFKRSLTY 224 (518)
T ss_pred cceeEEEEEEEEEEecceeeeEE
Confidence 99999999999999886654433
No 19
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.92 E-value=2.3e-24 Score=221.57 Aligned_cols=166 Identities=17% Similarity=0.263 Sum_probs=140.6
Q ss_pred ccccCCCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCCCCCcEEEEcCC-CCCcEEeccCCCeEEEcC
Q 008252 143 SFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSL-MKSVKALHIEDMDVVVEP 221 (572)
Q Consensus 143 ~~~~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~gvvIdl~~-mn~i~~~~~~~~~v~v~a 221 (572)
+++++++.|.+++.|+|++||++++++|+++++|++++|+|||+...... -.|++|||++ |++| +.++.+++|+|
T Consensus 23 ~t~~igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g-~~gvvI~l~~~l~~i---~~~~~~v~v~a 98 (298)
T PRK13905 23 TSFRVGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGG-IRGVVIRLGKGLNEI---EVEGNRITAGA 98 (298)
T ss_pred ceeecCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCC-cceEEEEecCCcceE---EecCCEEEEEC
Confidence 45588899999999999999999999999999999999999997421111 1389999998 9987 23567899999
Q ss_pred CCCHHHHHHHHccCCCc-cCCCCCCcccccccccccccCCCccccc-cccceeeeEEEEeeCCcEEEcccccccCcCCcc
Q 008252 222 GIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYG-TMRDNVINLKVVLANGDVVKTASRARKSAAGYD 299 (572)
Q Consensus 222 Gv~~~~L~~~L~~~Gl~-l~~~~~~~~tvGG~v~~~~~G~~~~~yG-~~~D~v~~~~vV~~dG~i~~~~~~~~~~~~g~d 299 (572)
|++|.+|.++|.++|+. ++...+.++||||++++|+ +.|| .++|+|+++++|++||++++.... |
T Consensus 99 G~~~~~L~~~l~~~Gl~gle~~~gipGTVGGai~~Na-----G~~G~~~~d~v~~v~vv~~~G~~~~~~~~--------e 165 (298)
T PRK13905 99 GAPLIKLARFAAEAGLSGLEFAAGIPGTVGGAVFMNA-----GAYGGETADVLESVEVLDRDGEIKTLSNE--------E 165 (298)
T ss_pred CCcHHHHHHHHHHcCCCcchhccCCCcchhHHHHHcC-----CcCceEhheeEEEEEEEeCCCCEEEEEHH--------H
Confidence 99999999999999995 7777777889999999994 4577 599999999999999999987532 6
Q ss_pred chhhhhcCCCC--eEEEEEEEEeeeccc
Q 008252 300 LTRLIIGSEGT--LGIITEVTLRLQKIP 325 (572)
Q Consensus 300 l~~~~~Gs~G~--lGIIt~~tlkl~p~p 325 (572)
+++..+++... +||||+++||++|..
T Consensus 166 ~~~~yR~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 166 LGFGYRHSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred cCCcCccccCCCCCEEEEEEEEEEcCCC
Confidence 77777776443 799999999999874
No 20
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=3.3e-23 Score=212.37 Aligned_cols=189 Identities=21% Similarity=0.324 Sum_probs=147.8
Q ss_pred cHHHHHHHHHhcCCCeeeChhhhhhccCCCCccccCCCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCC
Q 008252 112 PQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191 (572)
Q Consensus 112 ~~~~~~~L~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~ 191 (572)
..++.++|++.++.++.. ++.+ . ..+++++++.|++++.|+|++||++++++|+++++|++++|+|||+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~--~~~l---~-~~tt~~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNll---- 72 (302)
T PRK14652 3 EATWRDEIARRVRGEVLR--DAPL---A-PRTAVRVGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTL---- 72 (302)
T ss_pred hHHHHHHHHHhhcccccc--CCCc---c-cccEeecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCccee----
Confidence 456789998877765432 2333 1 23556899999999999999999999999999999999999999983
Q ss_pred CCCC---cEEEEcCC-CCCcEEeccCCCeEEEcCCCCHHHHHHHHccCCCc-cCCCCCCcccccccccccccCCCccccc
Q 008252 192 SPNG---GVCIDLSL-MKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYG 266 (572)
Q Consensus 192 ~~~~---gvvIdl~~-mn~i~~~~~~~~~v~v~aGv~~~~L~~~L~~~Gl~-l~~~~~~~~tvGG~v~~~~~G~~~~~yG 266 (572)
..++ |++|++++ ++.+ +.++.+++|+||+.|.+|.+++.++||. +++..++++||||++.||++ ..||
T Consensus 73 v~d~g~~gvVI~l~~~~~~i---~~~~~~v~v~AG~~~~~L~~~~~~~GL~GlE~l~gIPGTvGGav~mNaG----a~gg 145 (302)
T PRK14652 73 VADAGVRGVVLRLPQDFPGE---STDGGRLVLGAGAPISRLPARAHAHGLVGMEFLAGIPGTLGGAVAMNAG----TKLG 145 (302)
T ss_pred ecCCCEeeEEEEecCCcceE---EecCCEEEEECCCcHHHHHHHHHHcCCcccccccCCCcchhHHHHHcCC----CCce
Confidence 3333 79999976 4444 2345699999999999999999999998 77788888999999999943 2466
Q ss_pred cccceeeeEEEEeeCCcEEEcccccccCcCCccchhhhhcCCCCeEEEEEEEEeeeccc
Q 008252 267 TMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIP 325 (572)
Q Consensus 267 ~~~D~v~~~~vV~~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p 325 (572)
.++|+|.++++|++|| +.+... ...+|++-..+.+. + ||||+++|++.|.+
T Consensus 146 ei~d~v~~v~vv~~~G-~~~~~~----~e~~f~YR~s~~~~-~--~II~~a~~~L~~~~ 196 (302)
T PRK14652 146 EMKDVVTAVELATADG-AGFVPA----AALGYAYRTCRLPP-G--AVITRVEVRLRPGD 196 (302)
T ss_pred EhhheEEEEEEECCCC-cEEeeh----hhcCcccceeccCC-C--eEEEEEEEEEecCC
Confidence 6999999999999999 444432 22344544444443 3 89999999999854
No 21
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.88 E-value=5.2e-22 Score=204.03 Aligned_cols=188 Identities=19% Similarity=0.361 Sum_probs=152.3
Q ss_pred HHHHHHHHHhcCC-CeeeChhhhhhccCCCCccccCCCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCC
Q 008252 113 QELVDELKAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191 (572)
Q Consensus 113 ~~~~~~L~~~lg~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~ 191 (572)
.+++++|++.+++ .+..+ +.+ . ..+++++++.+.+++.|+|++||++++++|+++++|++++|+|||+.
T Consensus 4 ~~~~~~l~~~~~~~~v~~~--~~L---~-~~tt~~iGG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll---- 73 (307)
T PRK13906 4 KDIYQALQQLIPNEKIKVD--EPL---K-RYTYTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNII---- 73 (307)
T ss_pred HHHHHHHHHhcCCCeeecC--Ccc---c-cceEcCcCceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEe----
Confidence 4578899998864 45443 222 1 22445788999999999999999999999999999999999999983
Q ss_pred CCCC---cEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHHHHHHccCCCc-cCCCCCCcccccccccccccCCCccccc-
Q 008252 192 SPNG---GVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYG- 266 (572)
Q Consensus 192 ~~~~---gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~~~L~~~Gl~-l~~~~~~~~tvGG~v~~~~~G~~~~~yG- 266 (572)
..++ |++|++++|++|. ++ +.+++|+||+.|.+|.+++.++||. +....++++||||++.|| ++.||
T Consensus 74 ~~d~g~~GvvI~l~~l~~i~-~~--~~~v~v~aG~~~~~l~~~~~~~Gl~GlE~~~gIPGtVGGav~mN-----aGayGg 145 (307)
T PRK13906 74 IREGGIRGIVISLLSLDHIE-VS--DDAIIAGSGAAIIDVSRVARDYALTGLEFACGIPGSIGGAVYMN-----AGAYGG 145 (307)
T ss_pred ecCCCcceEEEEecCccceE-Ee--CCEEEEECCCcHHHHHHHHHHcCCccchhhcCCCccHhHHHHhh-----CCcchh
Confidence 3333 8999998899985 43 4589999999999999999999997 666677888999999999 44575
Q ss_pred cccceeeeEEEEeeCCcEEEcccccccCcCCccchhhhhcCCCCeEEEEEEEEeeecc
Q 008252 267 TMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKI 324 (572)
Q Consensus 267 ~~~D~v~~~~vV~~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~ 324 (572)
.++|+|+++++|++||++++.... ...++|+-..+.. . --||++++|++.|.
T Consensus 146 ~i~D~l~~v~vv~~~G~~~~~~~~--e~~f~YR~S~~~~---~-~~ii~~~~~~l~~~ 197 (307)
T PRK13906 146 EVKDCIDYALCVNEQGSLIKLTTK--ELELDYRNSIIQK---E-HLVVLEAAFTLAPG 197 (307)
T ss_pred hhhhheeEEEEEeCCCCEEEEEHH--HccCcCCcccCCC---C-CEEEEEEEEEECCC
Confidence 699999999999999999987655 4567887654422 1 26999999999863
No 22
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.88 E-value=3e-22 Score=205.80 Aligned_cols=188 Identities=20% Similarity=0.324 Sum_probs=148.8
Q ss_pred HHHHHHHHHhcCC-CeeeChhhhhhccCCCCccccCCCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCC
Q 008252 113 QELVDELKAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191 (572)
Q Consensus 113 ~~~~~~L~~~lg~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~ 191 (572)
++++++|.+.++. .+..+ +.+ ..+ +++++++.|++++.|+|++||++++++|+++++|++++|+|||+.
T Consensus 4 ~~~~~~l~~~l~~~~~~~~--~~l---~~~-tt~~igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll---- 73 (305)
T PRK12436 4 QEVYEYLSTVLPEGHVKQD--EML---KNH-THIKVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVI---- 73 (305)
T ss_pred HHHHHHHHHhcCcCceecC--Ccc---hhc-cCcccCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEE----
Confidence 3466778887754 33322 222 112 334788999999999999999999999999999999999999994
Q ss_pred CCCC---cEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHHHHHHccCCCc-cCCCCCCcccccccccccccCCCcccccc
Q 008252 192 SPNG---GVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT 267 (572)
Q Consensus 192 ~~~~---gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~~~L~~~Gl~-l~~~~~~~~tvGG~v~~~~~G~~~~~yG~ 267 (572)
..++ |++|+|++|+.|. ++ +.+++|+||+.|.+|.+++.++|+. +....+.++||||++.+| ++.||.
T Consensus 74 ~~d~g~~GvvI~l~~l~~i~-~~--~~~v~v~aG~~~~~L~~~~~~~gl~Gle~~~giPGtVGGav~~N-----AGayG~ 145 (305)
T PRK12436 74 IKDGGIRGITVSLIHITGVT-VT--GTTIVAQCGAAIIDVSRIALDHNLTGLEFACGIPGSVGGALYMN-----AGAYGG 145 (305)
T ss_pred EeCCCeeEEEEEeCCcCcEE-Ee--CCEEEEEeCCcHHHHHHHHHHcCCccchhhcCCccchhHHHHhc-----Cccchh
Confidence 3333 8999998899874 43 5689999999999999999999996 666777889999999999 445885
Q ss_pred -ccceeeeEEEEeeCCcEEEcccccccCcCCccchhhhhcCCCCeEEEEEEEEeeecc
Q 008252 268 -MRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKI 324 (572)
Q Consensus 268 -~~D~v~~~~vV~~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~ 324 (572)
+.|.+..++|+++||++++.... +..++|+-..+ .....||++++|++.+.
T Consensus 146 ~~~dvl~~v~vv~~~G~v~~~~~~--e~~f~YR~s~~----~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 146 EISFVLTEAVVMTGDGELRTLTKE--AFEFGYRKSVF----ANNHYIILEARFELEEG 197 (305)
T ss_pred ehheeeeEEEEEeCCCCEEEEEHH--HhcCcCCCCcC----CCCCEEEEEEEEEEcCC
Confidence 78888899999999999988665 34566665433 12348999999999765
No 23
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.87 E-value=6.8e-22 Score=201.45 Aligned_cols=167 Identities=20% Similarity=0.298 Sum_probs=141.3
Q ss_pred ccccCCCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCCCCCcEEEEcCCCCCcEEeccCCCeEEEcCC
Q 008252 143 SFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPG 222 (572)
Q Consensus 143 ~~~~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~~~~~~~~v~v~aG 222 (572)
+++++++.|.++++|+|++||++++++|+++++|++++|+|||+..... ..+|++|++++|+++. .++ +.+++|+||
T Consensus 5 tt~~igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~-~~~gvvi~l~~~~~~~-~~~-~~~v~v~aG 81 (284)
T TIGR00179 5 TTYKIGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDD-GRGGVIINLGKGIDIE-DDE-GEYVHVGGG 81 (284)
T ss_pred ceeecCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccC-CcCeEEEECCCCceEE-Eec-CCEEEEEcC
Confidence 4568899999999999999999999999999999999999999864332 2468999999999886 454 578999999
Q ss_pred CCHHHHHHHHccCCCc-cCCCCCCcccccccccccccCCCcccccc-ccceeeeEEEEeeCCcEEEcccccccCcCCccc
Q 008252 223 IGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLANGDVVKTASRARKSAAGYDL 300 (572)
Q Consensus 223 v~~~~L~~~L~~~Gl~-l~~~~~~~~tvGG~v~~~~~G~~~~~yG~-~~D~v~~~~vV~~dG~i~~~~~~~~~~~~g~dl 300 (572)
+.|.+|.+++.++||. ++...++++||||++.|| ++.||. +.|.|+++++|++||++++.... ...++|+-
T Consensus 82 ~~~~~l~~~~~~~Gl~GlE~l~giPGtvGGai~mN-----AGayG~~i~d~l~~v~vv~~~G~~~~~~~~--~~~f~YR~ 154 (284)
T TIGR00179 82 ENWHKLVKYALKNGLSGLEFLAGIPGTVGGAVIMN-----AGAYGVEISEVLVYATILLATGKTEWLTNE--QLGFGYRT 154 (284)
T ss_pred CcHHHHHHHHHHCCCcccccCCCCCchHHHHHHHh-----cccchhehhheEEEEEEEeCCCCEEEEEHH--HccccCCc
Confidence 9999999999999997 888888888999999999 566888 66789999999999999987654 55677876
Q ss_pred hhhhhcCCCCeEEEEEEEEeee
Q 008252 301 TRLIIGSEGTLGIITEVTLRLQ 322 (572)
Q Consensus 301 ~~~~~Gs~G~lGIIt~~tlkl~ 322 (572)
..+.. .. ..||++++|++.
T Consensus 155 S~f~~--~~-~~iil~a~~~l~ 173 (284)
T TIGR00179 155 SIFQH--KY-VGLVLKAEFQLT 173 (284)
T ss_pred cccCC--CC-cEEEEEEEEEec
Confidence 55421 11 379999999994
No 24
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=1.2e-20 Score=196.86 Aligned_cols=164 Identities=18% Similarity=0.236 Sum_probs=140.9
Q ss_pred ccccCCCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCCCCC---cEEEEcCCCCCcEEeccCCCeEEE
Q 008252 143 SFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG---GVCIDLSLMKSVKALHIEDMDVVV 219 (572)
Q Consensus 143 ~~~~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~---gvvIdl~~mn~i~~~~~~~~~v~v 219 (572)
+++++++.|++++.|+|++||++++++|+++++|+.++|+|||+ +..|+ |++|+++ ++.+. ++.++.+|+|
T Consensus 25 tt~~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNl----Lv~D~g~~GvVI~l~-~~~i~-i~~~~~~v~v 98 (363)
T PRK13903 25 TTLRVGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNL----VIADDGFDGTVVRVA-TRGVT-VDCGGGLVRA 98 (363)
T ss_pred cEeecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeE----eECCCCccEEEEEeC-CCcEE-EeCCCCEEEE
Confidence 45589999999999999999999999999999999999999998 34443 7999997 57774 5555678999
Q ss_pred cCCCCHHHHHHHHccCCCc-cCCCCCCcccccccccccccCCCcccccc-ccceeeeEEEEeeC-CcEEEcccccccCcC
Q 008252 220 EPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLAN-GDVVKTASRARKSAA 296 (572)
Q Consensus 220 ~aGv~~~~L~~~L~~~Gl~-l~~~~~~~~tvGG~v~~~~~G~~~~~yG~-~~D~v~~~~vV~~d-G~i~~~~~~~~~~~~ 296 (572)
+||+.|.+|.+++.++|+. ++...++++||||++.|| ++.||. +.|.|.++++++.+ |++++....
T Consensus 99 gAG~~~~~l~~~a~~~GL~GlE~laGIPGTVGGAv~mN-----aGayG~ei~D~l~sV~vvd~~~G~~~~~~~~------ 167 (363)
T PRK13903 99 EAGAVWDDVVARTVEAGLGGLECLSGIPGSAGATPVQN-----VGAYGQEVSDTITRVRLLDRRTGEVRWVPAA------ 167 (363)
T ss_pred EcCCCHHHHHHHHHHcCCccccccCCCCcchhhHhhcC-----CChhHHHHhhhEeEEEEEECCCCEEEEEEHH------
Confidence 9999999999999999999 999999999999999999 667887 89999999999965 999887543
Q ss_pred CccchhhhhcC---CCCeEEEEEEEEeeeccc
Q 008252 297 GYDLTRLIIGS---EGTLGIITEVTLRLQKIP 325 (572)
Q Consensus 297 g~dl~~~~~Gs---~G~lGIIt~~tlkl~p~p 325 (572)
|+.+..++| .+..+|||+++|++.|.+
T Consensus 168 --el~f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 168 --DLGFGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred --HcceeccccccCCCCCEEEEEEEEEEEcCC
Confidence 555555554 234789999999999873
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=1.8e-20 Score=191.16 Aligned_cols=190 Identities=17% Similarity=0.240 Sum_probs=150.2
Q ss_pred HHHHHHHHHhcCCCeeeChhhhhhccCCCCccccCCCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCC
Q 008252 113 QELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLS 192 (572)
Q Consensus 113 ~~~~~~L~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~ 192 (572)
.++++.|-+-.+. +..++.+ . ..+++++++.+++++.|+|.+|+++++++|++ ++|+++.|+|+|+-...-+
T Consensus 3 ~~~~~~~~~~~~~---~~~~~~L---~-~~tt~~iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g 74 (297)
T PRK14653 3 RKIIETLLKYGND---VFINEEM---K-CHVSFKIGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEP 74 (297)
T ss_pred hHHHHHHHHhcCe---eccCCcc---c-ccCEeeeCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCC
Confidence 4566666654442 2233333 1 23556899999999999999999999999999 9999999999998433322
Q ss_pred CCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHHHHHHccCCCc-cCCCCCCcccccccccccccCCCcccccc-ccc
Q 008252 193 PNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRD 270 (572)
Q Consensus 193 ~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~~~L~~~Gl~-l~~~~~~~~tvGG~v~~~~~G~~~~~yG~-~~D 270 (572)
-.|++|.+.+|+.|. ++ +..++|+||+.|.+|..++.++||. +++..++|+||||++.|| ++.||. ++|
T Consensus 75 -~~gvVI~l~~~~~i~-i~--~~~v~v~AG~~l~~L~~~~~~~GL~GlE~l~gIPGTVGGAv~mN-----AGayG~ei~d 145 (297)
T PRK14653 75 -MDFVVVSTERLDDIF-VD--NDKIICESGLSLKKLCLVAAKNGLSGFENAYGIPGSVGGAVYMN-----AGAYGWETAE 145 (297)
T ss_pred -ccEEEEEeCCcCceE-Ee--CCEEEEeCCCcHHHHHHHHHHCCCcchhhhcCCchhHHHHHHHh-----CccCchhhhe
Confidence 238999997899984 54 4689999999999999999999998 999999999999999999 566999 999
Q ss_pred eeeeEEEEeeCCcEEEcccccccCcCCccchhhhhcCCCCeEEEEEEEEeeeccc
Q 008252 271 NVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIP 325 (572)
Q Consensus 271 ~v~~~~vV~~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p 325 (572)
.|.++++++ +|++++.... +..++|+ +....+++.+ |||+++|++.|.+
T Consensus 146 ~l~~V~~~d-~g~v~~~~~~--e~~f~YR--~S~~~~~~~~-iI~~a~f~L~~~~ 194 (297)
T PRK14653 146 NIVEVVAYD-GKKIIRLGKN--EIKFSYR--NSIFKEEKDL-IILRVTFKLKKGN 194 (297)
T ss_pred eEEEEEEEC-CCEEEEEchh--hccccCc--cccCCCCCcE-EEEEEEEEEecCC
Confidence 999999999 7888877654 4445555 3444455555 9999999998753
No 26
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.81 E-value=1.3e-19 Score=185.46 Aligned_cols=174 Identities=18% Similarity=0.207 Sum_probs=141.3
Q ss_pred ccccCCCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCCCCCcEEEEcCCCC-CcEEeccCCCeEEEcC
Q 008252 143 SFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMK-SVKALHIEDMDVVVEP 221 (572)
Q Consensus 143 ~~~~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~gvvIdl~~mn-~i~~~~~~~~~v~v~a 221 (572)
+++++++.+++++.|+|++||++++++|+++++|+.++|+|||+...... .+|++|++++|+ ++. .+.++.+++|+|
T Consensus 13 tt~~iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g-~~GvVI~l~~~~~~i~-~~~~~~~v~v~A 90 (295)
T PRK14649 13 TSWRIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEG-FDGLVARYRGQRWELH-EHGDTAEVWVEA 90 (295)
T ss_pred cEeeeCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCC-cCeEEEEecCCCcEEE-EeCCcEEEEEEc
Confidence 55689999999999999999999999999999999999999998322211 248999998754 554 444444899999
Q ss_pred CCCHHHHHHHHccCCCc-cCCCCCCcccccccccccccCCCcccccc-ccceeeeEEEEeeCCcEEEcccccccCcCCcc
Q 008252 222 GIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLANGDVVKTASRARKSAAGYD 299 (572)
Q Consensus 222 Gv~~~~L~~~L~~~Gl~-l~~~~~~~~tvGG~v~~~~~G~~~~~yG~-~~D~v~~~~vV~~dG~i~~~~~~~~~~~~g~d 299 (572)
|+.|.+|.+++.++||. ++...++++||||++.|| ++.||. ++|.|.++++++.+|++++.... ...++|+
T Consensus 91 G~~~~~l~~~~~~~GL~GlE~l~GIPGTvGGa~~mN-----aGayg~ei~d~l~~V~~~~~~g~~~~~~~~--el~f~YR 163 (295)
T PRK14649 91 GAPMAGTARRLAAQGWAGLEWAEGLPGTIGGAIYGN-----AGCYGGDTATVLIRAWLLLNGSECVEWSVH--DFAYGYR 163 (295)
T ss_pred CCcHHHHHHHHHHcCCccccccCCCCcchhHHHHhh-----ccccceEhheeEEEEEEEeCCCCEEEEeHH--HcCcccc
Confidence 99999999999999999 999999999999999999 667776 99999999999999999987654 4557777
Q ss_pred chhhhhcCCCC----eEEEEEEEEeeeccc
Q 008252 300 LTRLIIGSEGT----LGIITEVTLRLQKIP 325 (572)
Q Consensus 300 l~~~~~Gs~G~----lGIIt~~tlkl~p~p 325 (572)
-..+.....+. --||+.++|++.|.+
T Consensus 164 ~S~~~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 164 TSVLKQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred eeecccccccccccCCeEEEEEEEEECCCC
Confidence 54433210111 149999999998754
No 27
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=3.1e-18 Score=171.53 Aligned_cols=167 Identities=22% Similarity=0.389 Sum_probs=145.5
Q ss_pred CccccCCCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCCCCC---cEEEEcCCCCCcEEeccCCCeEE
Q 008252 142 NSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG---GVCIDLSLMKSVKALHIEDMDVV 218 (572)
Q Consensus 142 ~~~~~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~---gvvIdl~~mn~i~~~~~~~~~v~ 218 (572)
.+++++++.++.++.|++.+|+.++++++.+.++|+.+.|+|+|+ +..|+ +++|.+.+++.+. ++.++..++
T Consensus 12 ~ttfriGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNl----Lv~d~g~~gvvi~~~~~~~~~-~~~~~~~i~ 86 (291)
T COG0812 12 YTTFRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNL----LVRDGGIGGVVIKLGKLNFIE-IEGDDGLIE 86 (291)
T ss_pred ceeEecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceE----EEecCCCceEEEEccccccee-eeccCCeEE
Confidence 356699999999999999999999999999999999999999997 44443 7899888887765 566666999
Q ss_pred EcCCCCHHHHHHHHccCCCc-cCCCCCCcccccccccccccCCCcccccc-ccceeeeEEEEeeCCcEEEcccccccCcC
Q 008252 219 VEPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLANGDVVKTASRARKSAA 296 (572)
Q Consensus 219 v~aGv~~~~L~~~L~~~Gl~-l~~~~~~~~tvGG~v~~~~~G~~~~~yG~-~~D~v~~~~vV~~dG~i~~~~~~~~~~~~ 296 (572)
|++|+.|.+|.+++.++|+. |++..++|+||||++.|| ++.||. ++|.+.++++++.+|++.+.... +..+
T Consensus 87 a~aG~~~~~l~~~~~~~gl~GlE~l~gIPGsvGgav~mN-----aGAyG~Ei~d~~~~v~~ld~~G~~~~l~~~--el~f 159 (291)
T COG0812 87 AGAGAPWHDLVRFALENGLSGLEFLAGIPGSVGGAVIMN-----AGAYGVEISDVLVSVEVLDRDGEVRWLSAE--ELGF 159 (291)
T ss_pred EccCCcHHHHHHHHHHcCCcchhhhcCCCcccchhhhcc-----CcccccchheeEEEEEEEcCCCCEEEEEHH--HhCc
Confidence 99999999999999999998 999999999999999999 778999 99999999999999999988765 4557
Q ss_pred CccchhhhhcCCCCeEEEEEEEEeeecc
Q 008252 297 GYDLTRLIIGSEGTLGIITEVTLRLQKI 324 (572)
Q Consensus 297 g~dl~~~~~Gs~G~lGIIt~~tlkl~p~ 324 (572)
+|+-.-+-. .. .||++++|++.|.
T Consensus 160 ~YR~S~f~~--~~--~vvl~v~f~L~~~ 183 (291)
T COG0812 160 GYRTSPFKK--EY--LVVLSVEFKLTKG 183 (291)
T ss_pred ccccCcCCC--CC--EEEEEEEEEeCCC
Confidence 777655422 12 9999999999876
No 28
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.77 E-value=3.1e-18 Score=174.23 Aligned_cols=166 Identities=20% Similarity=0.289 Sum_probs=142.3
Q ss_pred ccccCCCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCCCCC----cEEEEcCCCCCcEEeccCCCeEE
Q 008252 143 SFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG----GVCIDLSLMKSVKALHIEDMDVV 218 (572)
Q Consensus 143 ~~~~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~----gvvIdl~~mn~i~~~~~~~~~v~ 218 (572)
++++++++++.++.|+|.+|+++++++|+++++|+.+.|+|+|+ +..|+ |++|.+.+|+.+. ++ +..++
T Consensus 25 tt~~iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNl----Lv~D~g~~~g~vi~~~~~~~i~-~~--~~~v~ 97 (302)
T PRK14650 25 TTYKIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNI----LINDEEEIDFPIIYTGHLNKIE-IH--DNQIV 97 (302)
T ss_pred ceeeeCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEE----EEECCCccceEEEEECCcCcEE-Ee--CCEEE
Confidence 55689999999999999999999999999999999999999998 54444 5788886688875 43 35799
Q ss_pred EcCCCCHHHHHHHHccCCCc-cCCCCCCcccccccccccccCCCcccccc-ccceeeeEEEEeeCCcEEEcccccccCcC
Q 008252 219 VEPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLANGDVVKTASRARKSAA 296 (572)
Q Consensus 219 v~aGv~~~~L~~~L~~~Gl~-l~~~~~~~~tvGG~v~~~~~G~~~~~yG~-~~D~v~~~~vV~~dG~i~~~~~~~~~~~~ 296 (572)
|+||+.|.+|..++.++||. +++..++|+||||++.|| ++.||. ++|.|.++++++.+|++++.... +..+
T Consensus 98 a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mN-----AGayG~ei~d~l~sV~~~d~~g~~~~~~~~--e~~f 170 (302)
T PRK14650 98 AECGTNFEDLCKFALQNELSGLEFIYGLPGTLGGAIWMN-----ARCFGNEISEILDKITFIDEKGKTICKKFK--KEEF 170 (302)
T ss_pred EEeCCcHHHHHHHHHHcCCchhhhhcCCCcchhHHHHhh-----CCccccchheeEEEEEEEECCCCEEEEEHH--HcCc
Confidence 99999999999999999999 999999999999999999 778997 99999999999999999876554 5567
Q ss_pred CccchhhhhcCCCCeEEEEEEEEeeecccc
Q 008252 297 GYDLTRLIIGSEGTLGIITEVTLRLQKIPQ 326 (572)
Q Consensus 297 g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~ 326 (572)
+|+-..+-. . -.||++++|++.|.++
T Consensus 171 ~YR~S~f~~--~--~~iIl~a~f~L~~~~~ 196 (302)
T PRK14650 171 KYKISPFQN--K--NTFILKATLNLKKGNK 196 (302)
T ss_pred ccccccCCC--C--CEEEEEEEEEEcCCCH
Confidence 887655421 1 2699999999987653
No 29
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.75 E-value=8.2e-18 Score=173.63 Aligned_cols=171 Identities=18% Similarity=0.194 Sum_probs=140.6
Q ss_pred ccccCCCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCCCCCcEEEEcCCCCCcEEeccCC--CeEEEc
Q 008252 143 SFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIED--MDVVVE 220 (572)
Q Consensus 143 ~~~~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~~~~~~--~~v~v~ 220 (572)
+++++++.++.++.|+|++|+++++++|+++++|+.+.|+|+|+--.. . -.|++|.+ +|+.+...+.++ ..++|+
T Consensus 13 tt~riGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~-~~g~vI~~-~~~~~~~~~~~~~~~~v~a~ 89 (334)
T PRK00046 13 NTFGIDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-D-FDGTVLLN-RIKGIEVLSEDDDAWYLHVG 89 (334)
T ss_pred ceeccCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-C-CCEEEEEe-cCCceEEEecCCCeEEEEEE
Confidence 556899999999999999999999999999999999999999983211 1 24788887 488875222222 379999
Q ss_pred CCCCHHHHHHHHccCCCc-cCCCCCCcccccccccccccCCCcccccc-ccceeeeEEEEeeC-CcEEEcccccccCcCC
Q 008252 221 PGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLAN-GDVVKTASRARKSAAG 297 (572)
Q Consensus 221 aGv~~~~L~~~L~~~Gl~-l~~~~~~~~tvGG~v~~~~~G~~~~~yG~-~~D~v~~~~vV~~d-G~i~~~~~~~~~~~~g 297 (572)
||+.|.+|.+++.++||. ++...++++||||++.|| ++.||. ++|.|.++++++.+ |++++.... ...++
T Consensus 90 AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mN-----aGayG~ei~d~l~~V~v~d~~~g~~~~~~~~--e~~f~ 162 (334)
T PRK00046 90 AGENWHDLVLWTLQQGMPGLENLALIPGTVGAAPIQN-----IGAYGVELKDVCDYVEALDLATGEFVRLSAA--ECRFG 162 (334)
T ss_pred cCCcHHHHHHHHHHcCchhhHHhcCCCcchhHHHHhc-----CCcCcccHheeEEEEEEEECCCCcEEEEEHH--HcCcc
Confidence 999999999999999999 999999999999999999 778997 99999999999987 999887654 55678
Q ss_pred ccchhhhhcCCCCeEEEEEEEEeeecc
Q 008252 298 YDLTRLIIGSEGTLGIITEVTLRLQKI 324 (572)
Q Consensus 298 ~dl~~~~~Gs~G~lGIIt~~tlkl~p~ 324 (572)
|+-..+-. ..-.--||++++|+|.|.
T Consensus 163 YR~S~f~~-~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 163 YRDSIFKH-EYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred cccccCCC-CCcCCEEEEEEEEEecCC
Confidence 87655421 100126999999999876
No 30
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.72 E-value=5e-17 Score=167.52 Aligned_cols=172 Identities=16% Similarity=0.236 Sum_probs=138.0
Q ss_pred ccccCCCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCCCCC---cEEEEcCCCCCcEEe--ccCCCeE
Q 008252 143 SFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG---GVCIDLSLMKSVKAL--HIEDMDV 217 (572)
Q Consensus 143 ~~~~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~---gvvIdl~~mn~i~~~--~~~~~~v 217 (572)
+++++++.++.++.|+|.+|+++++++|+++++|+.+.|+|+|+ +..|+ |++|.+.+|+.+... ..+...+
T Consensus 22 tT~rIGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNl----L~~D~g~~G~VI~l~~~~~i~i~~~~~~~~~v 97 (354)
T PRK14648 22 CSFRIGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNV----LIADEGVPGLMLSLRRFRSLHTQTQRDGSVLV 97 (354)
T ss_pred ceeeeCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEE----EEeCCCccEEEEEeCCcCceEEeeccCCcEEE
Confidence 55689999999999999999999999999999999999999998 44443 799998668887521 1222479
Q ss_pred EEcCCCCHHHHHHHHccCCCc-cCCCCCCcccccccccccccCCCcccccc-ccceeeeEEEE-----------------
Q 008252 218 VVEPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVV----------------- 278 (572)
Q Consensus 218 ~v~aGv~~~~L~~~L~~~Gl~-l~~~~~~~~tvGG~v~~~~~G~~~~~yG~-~~D~v~~~~vV----------------- 278 (572)
+|++|+.|.+|..++.++||. ++...++|+||||++.|| ++.||. +.|.|.+++++
T Consensus 98 ~agAG~~~~~Lv~~~~~~gl~GlE~laGIPGTVGGAv~mN-----AGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~ 172 (354)
T PRK14648 98 HAGAGLPVAALLAFCAHHALRGLETFAGLPGSVGGAAYMN-----ARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRK 172 (354)
T ss_pred EEEeCCcHHHHHHHHHHcCCcchhhhcCCCcchhhHhhhc-----CCccceEhhheEEEEEEEeccCccccccccccccc
Confidence 999999999999999999998 999999999999999999 778998 99999999999
Q ss_pred ---eeCCcE-------------EEcccccccCcCCccchhhhhcCCC----CeEEEEEEEEeeeccc
Q 008252 279 ---LANGDV-------------VKTASRARKSAAGYDLTRLIIGSEG----TLGIITEVTLRLQKIP 325 (572)
Q Consensus 279 ---~~dG~i-------------~~~~~~~~~~~~g~dl~~~~~Gs~G----~lGIIt~~tlkl~p~p 325 (572)
+.+|++ .+.... ...++|+-..+...... .--||++++|+|.|.+
T Consensus 173 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~--e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 173 NAQDKRGECLGLDGGPFTCSSFQTVFAR--AGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred ccccCCCceecccccccccccceEecHH--HcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 456776 333222 44567776554321100 0259999999998754
No 31
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.69 E-value=4.4e-17 Score=164.37 Aligned_cols=145 Identities=23% Similarity=0.344 Sum_probs=127.6
Q ss_pred EEEcCCCCCcEEeccCCCeEEEcCCCCHHHHHHHHccCCCccCCCCCC-cccccccccccccCCCccccccccceeeeEE
Q 008252 198 CIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLAVRYGTMRDNVINLK 276 (572)
Q Consensus 198 vIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~~~L~~~Gl~l~~~~~~-~~tvGG~v~~~~~G~~~~~yG~~~D~v~~~~ 276 (572)
-|++..|..|+++|.++++|+|||+|+++++.++|.+.|++||+.+-. +.||||.+.+-|.-+.|.+||...|.+.+.|
T Consensus 105 ~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~EldDlTvGGLinG~Gies~ShkyGlfq~~~~aYE 184 (543)
T KOG1262|consen 105 QVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPELDDLTVGGLINGVGIESSSHKYGLFQHICTAYE 184 (543)
T ss_pred cCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeeecccccceecceeeecccccccchhhhHHhhhheeE
Confidence 344455668889999999999999999999999999999999998876 6999999887777788999999999999999
Q ss_pred EEeeCCcEEEcccccccCcCCccchhhhhcCCCCeEEEEEEEEeeeccccceEEEEEecCCHHHHHHHHH
Q 008252 277 VVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVVATCNFPTIKDAADVAI 346 (572)
Q Consensus 277 vV~~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~~~~~~f~~~~~a~~~~~ 346 (572)
||++||+++++.+.. ...|||.++-.|+||+|..+.+|+|+.|..++.....+...++++..+-+.
T Consensus 185 vVladGelv~~t~dn----e~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yvkltyip~~~l~e~c~k~~ 250 (543)
T KOG1262|consen 185 VVLADGELVRVTPDN----EHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYVKLTYIPVHGLDEYCKKIT 250 (543)
T ss_pred EEecCCeEEEecCCc----ccCceEEEcccccCchheeeeeEEEEEeccceEEEEEEecccHHHHHHHHH
Confidence 999999999987653 456999999999999999999999999999998888888888776554443
No 32
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.60 E-value=7.6e-15 Score=147.43 Aligned_cols=152 Identities=18% Similarity=0.215 Sum_probs=126.8
Q ss_pred ccccCCCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCCCC---CcEEEEcCC-CCCcEEeccCCCeEE
Q 008252 143 SFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPN---GGVCIDLSL-MKSVKALHIEDMDVV 218 (572)
Q Consensus 143 ~~~~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~---~gvvIdl~~-mn~i~~~~~~~~~v~ 218 (572)
++++++++++.++ |+|.+|+++++ ++|+.+.|+|+|+ +..| .|++|.+.+ ++.+. . ++ +
T Consensus 13 tt~riGG~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNl----L~~D~g~~g~vI~l~~~~~~~~-~--~~---~ 75 (273)
T PRK14651 13 TTLGVGGPAELWT-VETHEQLAEAT------EAPYRVLGGGSNL----LVSDAGVPERVIRLGGEFAEWD-L--DG---W 75 (273)
T ss_pred cEeecCceEEEEe-cCCHHHHHHHH------CCCeEEEeceeEE----EEcCCCcceEEEEECCcceeEe-E--CC---E
Confidence 5568999999999 99999999988 5899999999998 4444 378888765 55542 2 22 6
Q ss_pred EcCCCCHHHHHHHHccCCCc-cCCCCCCcccccccccccccCCCcccccc-ccceeeeEEEEeeCCcEEEcccccccCcC
Q 008252 219 VEPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLANGDVVKTASRARKSAA 296 (572)
Q Consensus 219 v~aGv~~~~L~~~L~~~Gl~-l~~~~~~~~tvGG~v~~~~~G~~~~~yG~-~~D~v~~~~vV~~dG~i~~~~~~~~~~~~ 296 (572)
|+||+.|.+|.+++.++||. ++...++|+||||++.|| ++.||. ++|.|.++++++ +|++.+.... ...+
T Consensus 76 a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mN-----aGayG~ei~d~l~~V~~~~-~g~~~~~~~~--e~~f 147 (273)
T PRK14651 76 VGGGVPLPGLVRRAARLGLSGLEGLVGIPAQVGGAVKMN-----AGTRFGEMADALHTVEIVH-DGGFHQYSPD--ELGF 147 (273)
T ss_pred EECCCcHHHHHHHHHHCCCcchhhhcCCCcchhhHHHhh-----CCccccChheeEEEEEEEE-CCCEEEEEHH--Hccc
Confidence 99999999999999999998 999999999999999999 778997 999999999997 8999887654 5567
Q ss_pred CccchhhhhcCCCCeEEEEEEEEeeecc
Q 008252 297 GYDLTRLIIGSEGTLGIITEVTLRLQKI 324 (572)
Q Consensus 297 g~dl~~~~~Gs~G~lGIIt~~tlkl~p~ 324 (572)
+|+-..+- . -.||++++|++.|.
T Consensus 148 ~YR~S~~~----~-~~iIl~a~f~l~~~ 170 (273)
T PRK14651 148 GYRHSGLP----P-GHVVTRVRLKLRPS 170 (273)
T ss_pred cccccCCC----C-CEEEEEEEEEECCC
Confidence 88766442 1 26999999999875
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.45 E-value=2.7e-13 Score=134.99 Aligned_cols=148 Identities=16% Similarity=0.128 Sum_probs=118.6
Q ss_pred CccccCCCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCCCCC--cEEEEcCCCCCcEEeccCCCeEEE
Q 008252 142 NSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG--GVCIDLSLMKSVKALHIEDMDVVV 219 (572)
Q Consensus 142 ~~~~~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~--gvvIdl~~mn~i~~~~~~~~~v~v 219 (572)
.++++++++++.++.|++.+ + ++|+.+.|+|+|+ +..|+ +.++-+.+|+.+. + ++.+++|
T Consensus 10 ~tt~~iGG~A~~~~~~~~~~-l----------~~p~~vlG~GSNl----Lv~D~g~~~vv~~~~~~~~~-~--~~~~v~~ 71 (257)
T PRK13904 10 YSSVKIGPPLEVLVLEEIDD-F----------SQDGQIIGGANNL----LISPNPKNLAILGKNFDYIK-I--DGECLEI 71 (257)
T ss_pred cCceeECceEEEEEEechhh-h----------CCCeEEEeceeEE----EEecCCccEEEEccCcCeEE-E--eCCEEEE
Confidence 35568999999999999988 6 8999999999998 44332 2344345677774 4 3458999
Q ss_pred cCCCCHHHHHHHHccCCCc-cCCCCCCcccccccccccccCCCcccccc-ccceeeeEEEEeeCCcEEEcccccccCcCC
Q 008252 220 EPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLANGDVVKTASRARKSAAG 297 (572)
Q Consensus 220 ~aGv~~~~L~~~L~~~Gl~-l~~~~~~~~tvGG~v~~~~~G~~~~~yG~-~~D~v~~~~vV~~dG~i~~~~~~~~~~~~g 297 (572)
+||+.|.+|.+++.++||. +++..++|+||||++.|| ++.||. ++|.|.++++++ |+ .... ...++
T Consensus 72 ~AG~~l~~l~~~~~~~gl~GlE~l~gIPGtVGGAv~mN-----aGa~g~ei~d~l~~V~~~~--~~---~~~~--e~~f~ 139 (257)
T PRK13904 72 GGATKSGKIFNYAKKNNLGGFEFLGKLPGTLGGLVKMN-----AGLKEYEISNNLESICTNG--GW---IEKE--DIGFG 139 (257)
T ss_pred EcCCcHHHHHHHHHHCCCchhhhhcCCCccHHHHHHhc-----CCcCccchheeEEEEEEEe--eE---EeHH--HCccc
Confidence 9999999999999999999 999999999999999999 778997 999999999998 42 2222 45577
Q ss_pred ccchhhhhcCCCCeEEEEEEEEeeecccc
Q 008252 298 YDLTRLIIGSEGTLGIITEVTLRLQKIPQ 326 (572)
Q Consensus 298 ~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~ 326 (572)
|+-..+- .||++++|++.|.++
T Consensus 140 YR~S~~~-------~iIl~a~f~l~~~~~ 161 (257)
T PRK13904 140 YRSSGIN-------GVILEARFKKTHGFD 161 (257)
T ss_pred ccCcCCC-------cEEEEEEEEECCCCH
Confidence 7765431 399999999988654
No 34
>PF09330 Lact-deh-memb: D-lactate dehydrogenase, membrane binding; InterPro: IPR015409 Members of this entry are predominantly found in prokaryotic D-lactate dehydrogenase, forming the cap-membrane-binding domain, which consists of a large seven-stranded antiparallel beta-sheet flanked on both sides by alpha-helices. They allow for membrane association []. ; GO: 0050660 flavin adenine dinucleotide binding, 0055085 transmembrane transport; PDB: 1F0X_A.
Probab=98.29 E-value=7.1e-05 Score=74.14 Aligned_cols=163 Identities=19% Similarity=0.198 Sum_probs=94.9
Q ss_pred eEEEEecChhhHHHHHHHHHHHhhhcCcceEEEcCCHHHHHHHHHHHHHHHHHH---HhcCC-Ccc-eeeeeeeecchhH
Q 008252 383 LMFEFIGTQAYSHEQTLIVQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWAC---FAMEP-SFE-AMISDVCVPLSCL 457 (572)
Q Consensus 383 l~~~~~g~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~lw~~R~~~~~~~---~~~~~-~~~-~~~~D~~vP~s~l 457 (572)
|++...+. .+++..+.+++.+...... -.|..+++|.......|..+..+. .++.. +.+ -+..|+++|.+.
T Consensus 115 Lilkm~~~--gi~ea~~~L~~~f~~~~~G-~~feCt~~E~~~A~LhRFaaAgAaiRY~avh~~~vedivaLDiALrRNd- 190 (291)
T PF09330_consen 115 LILKMSGD--GIEEARAYLKEFFAKAEDG-DFFECTPEEGKKAFLHRFAAAGAAIRYRAVHRKEVEDIVALDIALRRND- 190 (291)
T ss_dssp EEEEE-TT--HHHHHHHHHHHHCCCSS---EEEE--HHHHHHHHHHHTTHHHHHHHHHHHTCCCEECEEEEEEE-BTT--
T ss_pred eeeeecCC--cHHHHHHHHHHHhcccCCC-ceEeeCHHHHHHHHHHHHHhhhhhHHHHHhccccccceeeeeeeecCCc-
Confidence 44555443 3445555666666555412 246667777777777776544322 22322 222 357799998765
Q ss_pred HHHHHHHHHHhccCCcEEEEEEEecCCceEEEEeeCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEeccccccccHHHHHH
Q 008252 458 AELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEK 537 (572)
Q Consensus 458 ~e~l~~~~~~~~~~~~~~~~~gH~gdG~~h~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~gG~~s~ehGiG~~k~~~l~~ 537 (572)
.++++.+-+.++..-..-..+||+.+-.+|.-+++..... +.++.++|.+..-+-|....+||.+|..-
T Consensus 191 ~dW~E~LP~ei~~~i~~klyyGHF~ChVfHQDYivKkGvD-----~~alk~~ml~lLd~RGAeYPAEHNVGHLY------ 259 (291)
T PF09330_consen 191 RDWFETLPPEIEDQIVHKLYYGHFFCHVFHQDYIVKKGVD-----PHALKHEMLALLDARGAEYPAEHNVGHLY------ 259 (291)
T ss_dssp S--S----HHHHTTEEEEEEEEECCCTEEEEEEEEETTS------HHHHHHHHHHHHHHCT-BSSSSS--TTTS------
T ss_pred hhhhhhCCHHHHHHHHHHeeccccchhhchhhhhhccCCC-----HHHHHHHHHHHHHHhCCCCCcccCCCccc------
Confidence 6677777777766656677789999888998777654332 34677888888889999999999999863
Q ss_pred hhCHHHHHHHHHHHHhcCCCCCccCCC
Q 008252 538 ELGTGALETMKRIKVALDPNNIMNPGK 564 (572)
Q Consensus 538 ~~g~~~~~~~~~lK~~~DP~gIlNPGk 564 (572)
.+-..+++.-+.+||.|-||||-
T Consensus 260 ----~Akp~L~~fY~~lDPtNsfNPGI 282 (291)
T PF09330_consen 260 ----HAKPALKAFYRKLDPTNSFNPGI 282 (291)
T ss_dssp -------HHHHHHHHHH-TT--BSTTT
T ss_pred ----cCCHHHHHHHHhcCCCcCCCCCc
Confidence 13346667788999999999994
No 35
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=97.69 E-value=0.00025 Score=71.71 Aligned_cols=117 Identities=20% Similarity=0.208 Sum_probs=69.3
Q ss_pred ceeeeeeeecchhHHHHHHHHHHHh-ccCCc--EEEEEEEe------------cCCc-eEEE-EeeC--C-CCHHHHHHH
Q 008252 444 EAMISDVCVPLSCLAELISRSKKEL-DASPL--ICTVIAHA------------GDGN-FHTV-ILFD--P-SKEEDRQEA 503 (572)
Q Consensus 444 ~~~~~D~~vP~s~l~e~l~~~~~~~-~~~~~--~~~~~gH~------------gdG~-~h~~-i~~~--~-~~~~~~~~~ 503 (572)
.+.+.++.||-+++.++.+.+.+.+ ...+. ...+|--. -++. ++.+ ++.. + ..++..++.
T Consensus 140 PHPWlnlfvP~s~i~dF~~~V~~~il~~~~~~GpiLvYP~~~~kwd~~~s~v~Pde~vfylv~lLrsa~P~~~~~~l~~l 219 (281)
T PF09265_consen 140 PHPWLNLFVPKSRIEDFDRGVFKGILKDDGNSGPILVYPLNRSKWDTRMSAVIPDEDVFYLVALLRSADPSDGPDDLERL 219 (281)
T ss_dssp ----EEEEEEHHHHHHHHHHCCCCCTTTS-S-SEEEEEEEEGGGS-TTSS----SSSEEEEEEEEE---TTSSCCHHHHH
T ss_pred cCcceeeecchHHHHHHHHHHHHHhhccCCCCceEEEEEecccccCCCCcccCCCCCeEEEEEEeCCCCCCCCchhHHHH
Confidence 3568999999999999999876554 22211 11122111 1233 3322 2221 2 245677888
Q ss_pred HHHHHHHHHHHHhcC--CeEEeccccccccHHHHHHhhCHHHHHHHHHHHHhcCCCCCccCCC
Q 008252 504 ERLNRFMVHTALSME--GTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGK 564 (572)
Q Consensus 504 ~~~~~~l~~~~~~~g--G~~s~ehGiG~~k~~~l~~~~g~~~~~~~~~lK~~~DP~gIlNPGk 564 (572)
.+.+++|++.+.+.| |+..-.| ....+...++|| ..|+.+.+.|+.|||++||+||-
T Consensus 220 ~~qN~~il~~c~~agi~~k~Yl~~---~~t~~dW~~HFG-~~W~~f~~~K~~yDP~~IL~PGq 278 (281)
T PF09265_consen 220 LEQNRRILEFCRKAGIGGKQYLPH---YTTQEDWRRHFG-PKWERFVERKRRYDPKAILAPGQ 278 (281)
T ss_dssp HHHHHHHHHHHHHTT--EEESS------SSHHHHHHHHG-HHHHHHHHHHHHH-TT--B-GGG
T ss_pred HHHHHHHHHHHHHcCCceEECCCC---CCCHHHHHHHhc-hHHHHHHHHHHhCCchhhcCCCC
Confidence 899999999996554 5543333 234455577899 59999999999999999999993
No 36
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=97.08 E-value=0.0033 Score=63.60 Aligned_cols=111 Identities=15% Similarity=0.202 Sum_probs=64.3
Q ss_pred eeeeeeecchhHHHHHHHHHHHhccCC---cEEEEEEEe------------cCCceEEEE-eeCCCCHHHHHHHHHHHHH
Q 008252 446 MISDVCVPLSCLAELISRSKKELDASP---LICTVIAHA------------GDGNFHTVI-LFDPSKEEDRQEAERLNRF 509 (572)
Q Consensus 446 ~~~D~~vP~s~l~e~l~~~~~~~~~~~---~~~~~~gH~------------gdG~~h~~i-~~~~~~~~~~~~~~~~~~~ 509 (572)
...+++||.++..++++++++.+++.+ ....+.... |...+.+.+ .+.+. +.. ...+++.+.
T Consensus 126 ~~~E~~iP~~~~~~~l~~l~~~~~~~~~~~~~~pie~R~~~~d~~~Ls~~~~~~~~~i~~~~~~~~-~~~-~~~~~~~~~ 203 (259)
T PF04030_consen 126 WEMEYAIPIENAPEALRELRALIDKEGGFPVHFPIEVRFVKADDAWLSPAYGRDTCYIEIHMYRPM-GDP-VPYEEFFRA 203 (259)
T ss_dssp -EEEEEEEGGGHHHHHHHHHHTHHHHG--GGEEEEEEEEE--B-STT-TTBTS-EEEEEEEE-S-H-H----HHHHHHHH
T ss_pred eeEEEeeCHHHHHHHHHHHHHHHHHcccCceeEEEEEEEECCChhhcCCCCCCCEEEEEEEEeCCc-ccc-ccHHHHHHH
Confidence 467999999999999999999987765 222222221 111233333 33322 111 125677788
Q ss_pred HHHHHHhcCCeEEeccccc-cccHHHHHHhhCHHHHHHHHHHHHhcCCCCCccC
Q 008252 510 MVHTALSMEGTCTGEHGIG-TGKMKYLEKELGTGALETMKRIKVALDPNNIMNP 562 (572)
Q Consensus 510 l~~~~~~~gG~~s~ehGiG-~~k~~~l~~~~g~~~~~~~~~lK~~~DP~gIlNP 562 (572)
+.+.+.++||.+ |.|-- ......+.+.| ..++.+.++|+++||+|+|..
T Consensus 204 ~e~~~~~~ggRp--HWgK~~~~~~~~l~~~Y--p~~~~F~~~r~~~DP~g~F~n 253 (259)
T PF04030_consen 204 FEQILRKYGGRP--HWGKNHTLTAEQLRKLY--PRLDDFLAVRKKLDPQGVFLN 253 (259)
T ss_dssp HHHHHGGGT-EE---TTS-----HHHHHHT---TTHHHHHHHHHHH-TT-TT--
T ss_pred HHHHHHHcCCEE--CcCcCCCCCHHHHHHHC--cCHHHHHHHHHHhCCCCCCCC
Confidence 888889999998 44421 11234566666 478999999999999999864
No 37
>PRK09799 putative oxidoreductase; Provisional
Probab=96.52 E-value=0.0036 Score=63.30 Aligned_cols=140 Identities=13% Similarity=0.167 Sum_probs=87.6
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCCCCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHHHHHH
Q 008252 153 IIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYL 232 (572)
Q Consensus 153 ~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~~~L 232 (572)
-+..|+|.+|+.++++- ++-...+.+|||.+.-..-..+..++||++++ .+..+..+++.+++++++++.++.+..
T Consensus 4 ~y~~P~sl~Ea~~ll~~---~~~~a~ilAGGT~L~~~~~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~~ 79 (258)
T PRK09799 4 QFFRPDSVEQALELKRR---YQDEAVWFAGGSKLNATPTRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDAR 79 (258)
T ss_pred cEeCCCCHHHHHHHHHh---CCCCCEEEecCCChHhhhCCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhCc
Confidence 46789999999888763 43335678999998321111134689999976 666666678899999999999998764
Q ss_pred ccC-CCc--cC--CCCCC--cccccccccccccCCCccccccccce-----eeeEEEEeeCCcEEEcccccccCcCCccc
Q 008252 233 EPY-GLF--FP--LDPGP--GATIGGMCATRCSGSLAVRYGTMRDN-----VINLKVVLANGDVVKTASRARKSAAGYDL 300 (572)
Q Consensus 233 ~~~-Gl~--l~--~~~~~--~~tvGG~v~~~~~G~~~~~yG~~~D~-----v~~~~vV~~dG~i~~~~~~~~~~~~g~dl 300 (572)
.-. .|. +- .++.. -+|+||++.+..- .+|. .++.+|++.+++.+..
T Consensus 80 ~~~~~L~~a~~~vas~qIRN~aTiGGNl~~a~p---------~sD~~p~LlAldA~v~l~~~r~vpl------------- 137 (258)
T PRK09799 80 FIPAALREALGFVYSRHLRNQSTIGGEIAARQE---------ESVLLPVLLALDAELVFGNGETLSI------------- 137 (258)
T ss_pred ccHHHHHHHHHHhCCHHHhccchhHHHhhcCCc---------cHHHHHHHHHcCCEEEEecCcEEeH-------------
Confidence 221 111 00 11112 4999999986621 1332 3456666666643322
Q ss_pred hhhhhcCCCCeEEEEEEEEe
Q 008252 301 TRLIIGSEGTLGIITEVTLR 320 (572)
Q Consensus 301 ~~~~~Gs~G~lGIIt~~tlk 320 (572)
-.++.|..+ -|||++.+.
T Consensus 138 ~~f~~g~~~--Eil~~I~iP 155 (258)
T PRK09799 138 EDYLACPCD--RLLTEIIIP 155 (258)
T ss_pred HHhcCCCCC--cEEEEEEcC
Confidence 223334333 599988775
No 38
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=96.52 E-value=0.0012 Score=62.46 Aligned_cols=102 Identities=23% Similarity=0.235 Sum_probs=63.5
Q ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCC--CCCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHH
Q 008252 151 PDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL--SPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMEL 228 (572)
Q Consensus 151 p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~--~~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L 228 (572)
+-.++.|+|.+|+.++++ .+-...+.+|||.+.-.-- ......+||++++..+..+..+++.++++|++++.++
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l 77 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSEL 77 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHH
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHH
Confidence 345789999999999988 2235788899998631000 0123589999987666556667889999999999999
Q ss_pred HHHH--ccC-C-Cc--cCC--CCC--Cccccccccccc
Q 008252 229 NEYL--EPY-G-LF--FPL--DPG--PGATIGGMCATR 256 (572)
Q Consensus 229 ~~~L--~~~-G-l~--l~~--~~~--~~~tvGG~v~~~ 256 (572)
.+.- .++ . +. +-. ++. ..+|+||.++..
T Consensus 78 ~~~~~~~~~~p~L~~~~~~ias~~IRn~aTiGGNl~~~ 115 (171)
T PF00941_consen 78 EESPLIQQYFPALAQAARRIASPQIRNRATIGGNLCNA 115 (171)
T ss_dssp HHHHHHHHHHHHHHHHHCTSS-HHHHTT-BHHHHHHHT
T ss_pred hhcchhhhhHHHHHHHHHHhCCHhHeeeeeeccccccC
Confidence 9872 111 0 00 111 111 149999999666
No 39
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=96.48 E-value=0.012 Score=58.62 Aligned_cols=112 Identities=20% Similarity=0.221 Sum_probs=67.3
Q ss_pred eeeeeecchhHHHHHHHHHHHhccCC-----cE------EEEE----EEecCC----ceEEEEeeCCC-CHHHHHHHHHH
Q 008252 447 ISDVCVPLSCLAELISRSKKELDASP-----LI------CTVI----AHAGDG----NFHTVILFDPS-KEEDRQEAERL 506 (572)
Q Consensus 447 ~~D~~vP~s~l~e~l~~~~~~~~~~~-----~~------~~~~----gH~gdG----~~h~~i~~~~~-~~~~~~~~~~~ 506 (572)
..+++||.++..++++++++.++... .. +... ..++.+ .+++... .+. ++......+++
T Consensus 64 E~EyaVP~e~~~~aL~elr~l~~~~~~~l~~~ev~fPIevR~vaADdawLSp~rDSv~I~~~~y-r~~~~~~~pr~~~~~ 142 (257)
T PLN00107 64 QSAISVPLSGAAAFINDIKALRDIEPDALCGLELNYGVLLRYVRASPAHLGKEEDALDFDLTYY-RSKDDPAAPRLHEDA 142 (257)
T ss_pred EEEEEecHHHHHHHHHHHHHHHHhCcccccccccccCeEEEEecCcchhhCCCCCeEEEEEEEe-cccCCccccccHHHH
Confidence 45899999999999999999887652 22 1110 011111 1333222 222 22211233556
Q ss_pred HHHHHHH-HHhcCCeEEeccccccc-cHHHHHHhhCHHHHHHHHHHHHhcCCCCCccCC
Q 008252 507 NRFMVHT-ALSMEGTCTGEHGIGTG-KMKYLEKELGTGALETMKRIKVALDPNNIMNPG 563 (572)
Q Consensus 507 ~~~l~~~-~~~~gG~~s~ehGiG~~-k~~~l~~~~g~~~~~~~~~lK~~~DP~gIlNPG 563 (572)
.+++... +.++||.+ |+|--.. ....+.+.| ..++.+.++|+.+||+|+|-..
T Consensus 143 f~eiEqial~kygGRP--HWGK~h~l~~~~l~~lY--Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 143 MEEIEQMAILKYGALP--HWGKNRNAAFDGAIAKY--KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred HHHHHHHHHHhcCCcC--CchhccCCCHHHHHHHC--cCHHHHHHHHHHhCCCCccCCH
Confidence 6776655 78899998 5553211 123444444 3788999999999999998543
No 40
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=96.01 E-value=0.0096 Score=60.19 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=64.6
Q ss_pred EEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCCCCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHHHHHHc
Q 008252 154 IVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLE 233 (572)
Q Consensus 154 vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~~~L~ 233 (572)
++.|+|.+|..++++ +++-.-.+.+|||.+.-.....+..++||++++ .+..+..+++.++++|++++.++.+...
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~~~ 79 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPTRTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDNEL 79 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhcccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhCcc
Confidence 568999999888765 333234668999998421111233588999876 5655666778899999999999976421
Q ss_pred cCC-Cc--cC--CCCCC--ccccccccccc
Q 008252 234 PYG-LF--FP--LDPGP--GATIGGMCATR 256 (572)
Q Consensus 234 ~~G-l~--l~--~~~~~--~~tvGG~v~~~ 256 (572)
-.+ +. .. .++-. -+|+||++++.
T Consensus 80 ~~~~L~~aa~~va~~qIRN~gTlGGNl~~a 109 (257)
T TIGR03312 80 TPAALKEALGFVYSRHIRNQATIGGEIAAF 109 (257)
T ss_pred hHHHHHHHHHHhCCHHHhccccHHHHhhcC
Confidence 111 11 01 12222 49999999866
No 41
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=95.36 E-value=0.03 Score=61.41 Aligned_cols=102 Identities=14% Similarity=0.130 Sum_probs=70.0
Q ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCC-CC-CCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHH
Q 008252 151 PDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHT-LS-PNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMEL 228 (572)
Q Consensus 151 p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~-~~-~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L 228 (572)
..-+++|+|.+|+.++++. +. ...+.+|||.+.-.- .. .+...+||++++..+..+..+++.++++|++++.++
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el 267 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDA 267 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHH
Confidence 4568999999999988763 32 356789999873110 11 123689999987665555667788999999999999
Q ss_pred HHHHccC--CCc--cC--CCCCC--ccccccccccc
Q 008252 229 NEYLEPY--GLF--FP--LDPGP--GATIGGMCATR 256 (572)
Q Consensus 229 ~~~L~~~--Gl~--l~--~~~~~--~~tvGG~v~~~ 256 (572)
.+.+.++ .+. +. .++-+ -+||||++++.
T Consensus 268 ~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~a 303 (467)
T TIGR02963 268 YAALAKRYPELGELLRRFASLQIRNAGTLGGNIANG 303 (467)
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHcCceecccccccC
Confidence 8776543 111 11 12222 49999999876
No 42
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=95.21 E-value=0.013 Score=43.05 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=22.7
Q ss_pred HHHHHhhCHHHHHHHHHHHHhcCCCCCccC
Q 008252 533 KYLEKELGTGALETMKRIKVALDPNNIMNP 562 (572)
Q Consensus 533 ~~l~~~~g~~~~~~~~~lK~~~DP~gIlNP 562 (572)
.+....+| +.++.+++||+.+||+|+|.-
T Consensus 14 ~~~~~yyg-~n~~rL~~iK~~yDP~n~F~~ 42 (47)
T PF08031_consen 14 DWQEAYYG-ENYDRLRAIKRKYDPDNVFRF 42 (47)
T ss_dssp HHHHHHHG-GGHHHHHHHHHHH-TT-TS-S
T ss_pred HHHHHHhc-hhHHHHHHHHHHhCccceeCC
Confidence 57777888 679999999999999999974
No 43
>PLN02906 xanthine dehydrogenase
Probab=91.33 E-value=0.28 Score=60.67 Aligned_cols=101 Identities=15% Similarity=0.085 Sum_probs=68.7
Q ss_pred CEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCC-C-CCCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHHH
Q 008252 152 DIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHT-L-SPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELN 229 (572)
Q Consensus 152 ~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~-~-~~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~ 229 (572)
.-++.|+|.+|+.++++-. . ...+.+|||.+.-.. . ..+..++||++++..+..+..+++.++++|++++.+|.
T Consensus 229 ~~~~~P~tl~ea~~ll~~~---~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~ 304 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAEY---P-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQ 304 (1319)
T ss_pred ceEECcCCHHHHHHHHHhC---C-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHH
Confidence 4588999999999876642 1 246688999873111 0 11336899999876666666677889999999999999
Q ss_pred HHHccCC-----C---ccCC---------CCCC--ccccccccccc
Q 008252 230 EYLEPYG-----L---FFPL---------DPGP--GATIGGMCATR 256 (572)
Q Consensus 230 ~~L~~~G-----l---~l~~---------~~~~--~~tvGG~v~~~ 256 (572)
+.|.+.= + .+|. ++-. -+||||++++.
T Consensus 305 ~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a 350 (1319)
T PLN02906 305 NLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTA 350 (1319)
T ss_pred HHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccC
Confidence 8754431 0 1121 1112 49999999876
No 44
>PLN00192 aldehyde oxidase
Probab=90.34 E-value=0.5 Score=58.54 Aligned_cols=106 Identities=13% Similarity=0.057 Sum_probs=70.8
Q ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCCCCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHHHH
Q 008252 151 PDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNE 230 (572)
Q Consensus 151 p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~~ 230 (572)
..-++.|+|.+|+.++++.....+-...+..|||.+.-.-....-.++||++++..+..+..+++.++++|++++.++.+
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~~ 312 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKDEELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAIE 312 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeeccCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHHH
Confidence 45688999999999887642100123567889998732111112368999998766666666778899999999999998
Q ss_pred HHccCCC---ccCC---------CCCC--ccccccccccc
Q 008252 231 YLEPYGL---FFPL---------DPGP--GATIGGMCATR 256 (572)
Q Consensus 231 ~L~~~Gl---~l~~---------~~~~--~~tvGG~v~~~ 256 (572)
.+...-. .+|. ++-+ -+|+||++++.
T Consensus 313 ~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~A 352 (1344)
T PLN00192 313 ALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMA 352 (1344)
T ss_pred HHHhhccccchHHHHHHHHHHhcChhhccceechhhhccc
Confidence 8765421 1221 1112 49999999876
No 45
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=90.29 E-value=0.67 Score=47.76 Aligned_cols=100 Identities=12% Similarity=0.084 Sum_probs=64.2
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCC-CCC-CCCcEEEEcCCCCCcEEec-cCCCeEEEcCCCCHHHHH
Q 008252 153 IIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGH-TLS-PNGGVCIDLSLMKSVKALH-IEDMDVVVEPGIGWMELN 229 (572)
Q Consensus 153 ~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~-~~~-~~~gvvIdl~~mn~i~~~~-~~~~~v~v~aGv~~~~L~ 229 (572)
-++.|+|.+|..++++. +. ...+.+|||.+.-. ... .+...+||++++..+..+. .+++.+++++++++.++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~ 81 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQII 81 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHh
Confidence 57889999998888763 32 35778999987311 011 1236889999876555555 345679999999999998
Q ss_pred H--HHccCCCccC------CCCCC--ccccccccccc
Q 008252 230 E--YLEPYGLFFP------LDPGP--GATIGGMCATR 256 (572)
Q Consensus 230 ~--~L~~~Gl~l~------~~~~~--~~tvGG~v~~~ 256 (572)
+ .+.++--.|. .++.. -+|+||++.+.
T Consensus 82 ~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a 118 (291)
T PRK09971 82 EDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNG 118 (291)
T ss_pred cChHHHHHhHHHHHHHHHhCCHHHhcceecccccccC
Confidence 6 2222110011 11112 49999999865
No 46
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=89.60 E-value=0.77 Score=47.92 Aligned_cols=99 Identities=18% Similarity=0.213 Sum_probs=63.7
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCC-C-CCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHHHH
Q 008252 153 IIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL-S-PNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNE 230 (572)
Q Consensus 153 ~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~-~-~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~~ 230 (572)
.++.|+|.+|..++++- ++ .-.+.+|||.+.-... . .....+||+.++..+..+..+++.+++++++++.+|.+
T Consensus 6 ~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~~ 81 (321)
T TIGR03195 6 RTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALAE 81 (321)
T ss_pred eEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHhh
Confidence 47889999998887763 32 2467899997621110 0 12368899997655544555677899999999999966
Q ss_pred HHccCCCccCC---------CCCC--ccccccccccc
Q 008252 231 YLEPYGLFFPL---------DPGP--GATIGGMCATR 256 (572)
Q Consensus 231 ~L~~~Gl~l~~---------~~~~--~~tvGG~v~~~ 256 (572)
.-.-.. .+|. ++.. -+|+||.+.+.
T Consensus 82 ~~~i~~-~~p~L~~a~~~ias~qIRN~aTiGGNi~~~ 117 (321)
T TIGR03195 82 DALVRT-RWPALAQAARAVAGPTHRAAATLGGNLCLD 117 (321)
T ss_pred ChhhHh-HhHHHHHHHHHhCCHHHhCceecHHhhhcc
Confidence 311001 1121 1212 49999999864
No 47
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=87.72 E-value=0.96 Score=56.06 Aligned_cols=102 Identities=13% Similarity=0.106 Sum_probs=69.4
Q ss_pred CEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCC-C-CCCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHHH
Q 008252 152 DIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHT-L-SPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELN 229 (572)
Q Consensus 152 ~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~-~-~~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~ 229 (572)
.-++.|+|.+|+.++++. +. .-++..|||.+.-.- . ..+...+||+++...+..+..+++.++++|++++.+|.
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 458899999999988764 22 346688999873111 1 11235899999877666666677889999999999999
Q ss_pred HHHccC----C----CccCC---------CCCC--cccccccccccc
Q 008252 230 EYLEPY----G----LFFPL---------DPGP--GATIGGMCATRC 257 (572)
Q Consensus 230 ~~L~~~----G----l~l~~---------~~~~--~~tvGG~v~~~~ 257 (572)
+.|.+. . -.+|. ++-+ -+|+||++++..
T Consensus 313 ~~l~~~i~~~p~~~~~~~p~L~~a~~~ias~qIRN~gTlGGNi~~as 359 (1330)
T TIGR02969 313 DILADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISRH 359 (1330)
T ss_pred HHHHHhhhcCchhhhHHHHHHHHHHHHhCChhhcccccchhhcccCC
Confidence 876532 1 01221 1112 499999998763
No 48
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=87.43 E-value=0.69 Score=46.94 Aligned_cols=95 Identities=21% Similarity=0.194 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCC-CC--CCCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHHHHHHHHc
Q 008252 157 PRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHT-LS--PNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLE 233 (572)
Q Consensus 157 P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~-~~--~~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~~L~~~L~ 233 (572)
|+|.+|+.++++.. . ...+.+|||.+.-.- .. .....+||++++..+..++.+++.+++++++++.++.+.=.
T Consensus 1 P~sl~ea~~ll~~~---~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~~ 76 (264)
T TIGR03199 1 PAALDEAWSLLEKA---P-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNPL 76 (264)
T ss_pred CCCHHHHHHHHHhC---C-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhChH
Confidence 78999988887742 2 356789999873111 11 12368899998877766777788999999999999975210
Q ss_pred cCCCccCC---------CCCC--ccccccccccc
Q 008252 234 PYGLFFPL---------DPGP--GATIGGMCATR 256 (572)
Q Consensus 234 ~~Gl~l~~---------~~~~--~~tvGG~v~~~ 256 (572)
-.. .+|. ++.. -+|+||+++++
T Consensus 77 i~~-~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 77 IKR-ALPCFVDAASAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred hHh-HhHHHHHHHHHhcCHHHhcceecHHhccCc
Confidence 000 1121 1212 49999999765
No 49
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=83.68 E-value=2.6 Score=44.13 Aligned_cols=128 Identities=13% Similarity=0.153 Sum_probs=80.1
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCCCC---CCcEEEEcCCCCCcEEeccCCCeEEEcCCCCHH
Q 008252 150 IPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSP---NGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWM 226 (572)
Q Consensus 150 ~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~---~~gvvIdl~~mn~i~~~~~~~~~v~v~aGv~~~ 226 (572)
-.+.++.|.+.+|+.+++.. .- ..++..|++.++=- +.. +-..+|-..++..+..++...+.+++++|+++.
T Consensus 202 ~~~r~~~P~~l~D~a~l~aa--~P--~AtivAGsTDvgLw-Vtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t 276 (493)
T COG4630 202 GDDRFIVPATLADFADLLAA--HP--GATIVAGSTDVGLW-VTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYT 276 (493)
T ss_pred CCceeEeeccHHHHHHHHhh--CC--CCEEEecCcchhhH-HHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHH
Confidence 45668889999999988742 32 34556677776311 111 223455556666665666788899999999999
Q ss_pred HHHHHHccCCCc----cC-CCC--C-CcccccccccccccCCCccccccc--cceeeeEEEEeeCCcEEEcc
Q 008252 227 ELNEYLEPYGLF----FP-LDP--G-PGATIGGMCATRCSGSLAVRYGTM--RDNVINLKVVLANGDVVKTA 288 (572)
Q Consensus 227 ~L~~~L~~~Gl~----l~-~~~--~-~~~tvGG~v~~~~~G~~~~~yG~~--~D~v~~~~vV~~dG~i~~~~ 288 (572)
+.+..|..+=-. ++ ++. . ..+|+||++++++ .-|.. .=-.++.++++-.|+-.++-
T Consensus 277 ~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangS------PIGDtPPaLIALgA~ltLr~g~~~Rtl 342 (493)
T COG4630 277 QAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGS------PIGDTPPALIALGATLTLRSGDGRRTL 342 (493)
T ss_pred HHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCC------cCCCCCchhhhcCcEEEEEecCCcccc
Confidence 999999764110 11 111 1 2589999998772 11221 11256788888777655543
No 50
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=64.24 E-value=16 Score=37.39 Aligned_cols=102 Identities=14% Similarity=0.068 Sum_probs=62.3
Q ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCC--CCCCcEEEEcCCCCCcEE-eccCCCeEEEcCCCCHHH
Q 008252 151 PDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL--SPNGGVCIDLSLMKSVKA-LHIEDMDVVVEPGIGWME 227 (572)
Q Consensus 151 p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~--~~~~gvvIdl~~mn~i~~-~~~~~~~v~v~aGv~~~~ 227 (572)
+-.+.+|.|.+|...+++ +++ -..+.+|||++--.-- .....-+||+.++..... ...+++.++++|-+++.+
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 445789999999776665 444 5678899999731000 012356788887642221 233566799999999999
Q ss_pred HHHHHccCCCc--------cCCCCCC--ccccccccccc
Q 008252 228 LNEYLEPYGLF--------FPLDPGP--GATIGGMCATR 256 (572)
Q Consensus 228 L~~~L~~~Gl~--------l~~~~~~--~~tvGG~v~~~ 256 (572)
+.+.=.-+... .-.++.. -+|+||.++.+
T Consensus 79 i~~~~~~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a 117 (284)
T COG1319 79 IARHPAVRRIPPALSEAASAIASPQVRNRATIGGNLCNA 117 (284)
T ss_pred HHhChhhhhhchHHHHHHHHhcChhhcceeeecchhccC
Confidence 87443222211 1112322 48999986655
No 51
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=28.25 E-value=77 Score=35.25 Aligned_cols=93 Identities=20% Similarity=0.369 Sum_probs=52.9
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHhC-CCCEEEE-----CCC-CCCCCCCCCCCCcEEEEcCCCCCcEEeccCCCeEEEcC
Q 008252 149 NIPDIIVFPRSEDEVSKIVKCCDKH-KVPIIPY-----GGA-TSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEP 221 (572)
Q Consensus 149 ~~p~~vv~P~s~eeV~~iv~~a~~~-~~~v~~~-----GgG-~s~~g~~~~~~~gvvIdl~~mn~i~~~~~~~~~v~v~a 221 (572)
+.|-..++|.++|+|.+++++|+++ ..|++.. +|| |||+.. +..+|-+ ...|. ..++-++.|+.
T Consensus 150 G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGraGGHHSweDl-----d~llL~t--Ys~lR--~~~NIvl~vGg 220 (717)
T COG4981 150 GFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWEDL-----DDLLLAT--YSELR--SRDNIVLCVGG 220 (717)
T ss_pred CceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCccCCccchhhc-----ccHHHHH--HHHHh--cCCCEEEEecC
Confidence 6788999999999999999999987 4566653 334 344211 1122211 12222 12444577888
Q ss_pred CCCHH-HHHHHHc---cCCCccCCCCCCccccc
Q 008252 222 GIGWM-ELNEYLE---PYGLFFPLDPGPGATIG 250 (572)
Q Consensus 222 Gv~~~-~L~~~L~---~~Gl~l~~~~~~~~tvG 250 (572)
|+--. +-+.+|- ...+.+|..|..+.-+|
T Consensus 221 GiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvG 253 (717)
T COG4981 221 GIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVG 253 (717)
T ss_pred CcCChhhcccccccchhhhcCCCCCCcceeEec
Confidence 87654 4555552 12233555554443333
No 52
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=26.77 E-value=1.7e+02 Score=23.48 Aligned_cols=39 Identities=31% Similarity=0.441 Sum_probs=30.1
Q ss_pred CCCeEEEcCCCCHHHHHHHHccCCCccCCCCCCccccccccccc
Q 008252 213 EDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATR 256 (572)
Q Consensus 213 ~~~~v~v~aGv~~~~L~~~L~~~Gl~l~~~~~~~~tvGG~v~~~ 256 (572)
+++...|.+-+++.+|++.+ |+.+|.. ..-|+||++...
T Consensus 4 ~~~~~~v~G~~~l~~l~~~~---~~~l~~~--~~~Tl~G~i~~~ 42 (81)
T PF03471_consen 4 DDGTYIVSGSTPLDDLNELL---GLDLPEE--DYDTLGGLILEQ 42 (81)
T ss_dssp TTSEEEEETTSBHHHHHHHH---TS-TTTT--TTSBHHHHHHHH
T ss_pred cCCEEEEEecCCHHHHHHHH---CcCCCcc--chhhHHHHHHHH
Confidence 46778999999999999996 4556653 345999999776
No 53
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=24.12 E-value=66 Score=33.22 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=21.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCEEEE
Q 008252 157 PRSEDEVSKIVKCCDKHKVPIIPY 180 (572)
Q Consensus 157 P~s~eeV~~iv~~a~~~~~~v~~~ 180 (572)
.=|.+|+++++++|++.||.|+|-
T Consensus 68 ~yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 68 FYTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEe
Confidence 348899999999999999999984
No 54
>PF10469 AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; InterPro: IPR019510 This entry represents the N-terminal nuclear localisation signal-containing domain found in the cyclic AMP-dependent protein kinase A (PKA) anchor protein, AKAP7. This protein anchors PKA for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes []. This domain carries the nuclear localisation signal (NLS) KKRKK, that indicates the cellular destiny of this anchor protein []. Binding to the regulatory subunits RI and RII of PKA is mediated via the RI-RII subunit-binding domain at the C terminus.
Probab=23.76 E-value=1.8e+02 Score=27.99 Aligned_cols=84 Identities=8% Similarity=0.093 Sum_probs=51.8
Q ss_pred ecCCceEEEEee-CCCCHHHHHHHHHHHHHHHHHHHhc----CCeEEeccccccccH-----H--HHHHhh---CHHHHH
Q 008252 481 AGDGNFHTVILF-DPSKEEDRQEAERLNRFMVHTALSM----EGTCTGEHGIGTGKM-----K--YLEKEL---GTGALE 545 (572)
Q Consensus 481 ~gdG~~h~~i~~-~~~~~~~~~~~~~~~~~l~~~~~~~----gG~~s~ehGiG~~k~-----~--~l~~~~---g~~~~~ 545 (572)
.....+|+.+.+ .-.++++.+++.++.+.+.+.+.+. +...-.-+|+|.... . |..-.- .....+
T Consensus 38 i~~~~lHlTL~vl~L~~~~~i~~a~~~L~~~~~~i~~~~~~~~~~~i~l~Gl~~f~~d~~~~~VLya~v~~~~~~~~L~~ 117 (209)
T PF10469_consen 38 IPPEKLHLTLGVLSLDTDEEIEKAKEALKSLKQEIKDQLQNPPPLKITLKGLGYFNDDPSKARVLYAKVSEDSNSERLQE 117 (209)
T ss_pred CCcccceEEEEEeeCCCHHHHHHHHHHHHHHHHHHhhhccCCCCceEEeeechhhCCCCCcceEEEEcccccchHHHHHH
Confidence 356788987653 3445667888888888887666664 333444577776654 2 221111 123345
Q ss_pred HHHHHHHhcCCCCCccCCC
Q 008252 546 TMKRIKVALDPNNIMNPGK 564 (572)
Q Consensus 546 ~~~~lK~~~DP~gIlNPGk 564 (572)
+...|.+.|--.||+..+.
T Consensus 118 l~~~l~~~f~~~Gl~~~~~ 136 (209)
T PF10469_consen 118 LANKLRERFQEAGLLVTDD 136 (209)
T ss_pred HHHHHHHHHHHcCCccccc
Confidence 6777888888888888543
No 55
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=23.60 E-value=68 Score=33.64 Aligned_cols=23 Identities=13% Similarity=0.432 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEE
Q 008252 158 RSEDEVSKIVKCCDKHKVPIIPY 180 (572)
Q Consensus 158 ~s~eeV~~iv~~a~~~~~~v~~~ 180 (572)
=|.+|++++|++|++.+|.|+|-
T Consensus 72 YT~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 72 YTQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEe
Confidence 38999999999999999999984
No 56
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=23.29 E-value=95 Score=26.64 Aligned_cols=34 Identities=15% Similarity=0.377 Sum_probs=28.4
Q ss_pred CCC-EEEEcCCHHHHHHHHHHHHhCCCCEEEECCC
Q 008252 150 IPD-IIVFPRSEDEVSKIVKCCDKHKVPIIPYGGA 183 (572)
Q Consensus 150 ~p~-~vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG 183 (572)
.|. .+|.+.+..|++.++.+|.+.|+||...+.-
T Consensus 55 vP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 55 VPWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred CCCEEEECCCCCccHHHHHHHHHHcCCcEEEeCCC
Confidence 444 4677788899999999999999999988753
No 57
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.78 E-value=73 Score=32.92 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=22.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCEEEE
Q 008252 157 PRSEDEVSKIVKCCDKHKVPIIPY 180 (572)
Q Consensus 157 P~s~eeV~~iv~~a~~~~~~v~~~ 180 (572)
+=|.+|+++++++|+++|+.|+|-
T Consensus 56 ~yT~~ei~ei~~yA~~~gI~vIPe 79 (301)
T cd06565 56 AYTKEEIREIDDYAAELGIEVIPL 79 (301)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEec
Confidence 469999999999999999999984
No 58
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=21.61 E-value=67 Score=33.57 Aligned_cols=23 Identities=13% Similarity=0.465 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEE
Q 008252 158 RSEDEVSKIVKCCDKHKVPIIPY 180 (572)
Q Consensus 158 ~s~eeV~~iv~~a~~~~~~v~~~ 180 (572)
=|.+|++++|++|+++||.|+|-
T Consensus 70 yT~~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 70 YTKEDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp BEHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCHHHHHHHHHHHHHcCCceeee
Confidence 48899999999999999999984
No 59
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.54 E-value=81 Score=32.81 Aligned_cols=23 Identities=9% Similarity=0.421 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEE
Q 008252 158 RSEDEVSKIVKCCDKHKVPIIPY 180 (572)
Q Consensus 158 ~s~eeV~~iv~~a~~~~~~v~~~ 180 (572)
=|.+|++++|++|++.||.|+|-
T Consensus 65 yT~~di~elv~yA~~rgI~vIPE 87 (311)
T cd06570 65 YTQEQIREVVAYARDRGIRVVPE 87 (311)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEe
Confidence 59999999999999999999984
No 60
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=21.42 E-value=1.4e+02 Score=27.48 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=26.3
Q ss_pred CCC-EEEEcCCHHHHHHHHHHHHhCCCCEEEE
Q 008252 150 IPD-IIVFPRSEDEVSKIVKCCDKHKVPIIPY 180 (572)
Q Consensus 150 ~p~-~vv~P~s~eeV~~iv~~a~~~~~~v~~~ 180 (572)
.|. .|+.|.+.+|+..+++.|-+.+-|+..|
T Consensus 122 iPg~~v~~Ps~~~~~~~ll~~a~~~~~P~~ir 153 (156)
T cd07033 122 IPNMTVLRPADANETAAALEAALEYDGPVYIR 153 (156)
T ss_pred CCCCEEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 444 4788999999999999998887788876
No 61
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=20.98 E-value=2e+02 Score=25.18 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=28.3
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEE
Q 008252 148 VNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIP 179 (572)
Q Consensus 148 ~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~ 179 (572)
.+.+..|+...|++|+.++.+-|.+.+++...
T Consensus 45 ~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~ 76 (113)
T PRK04322 45 EGQKKVVLKVNSEEELLELKEKAERLGLPTAL 76 (113)
T ss_pred CCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEE
Confidence 46899999999999999999999999988553
No 62
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.94 E-value=1.8e+02 Score=27.82 Aligned_cols=33 Identities=21% Similarity=0.167 Sum_probs=29.4
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhCCCCEEEE
Q 008252 148 VNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPY 180 (572)
Q Consensus 148 ~~~p~~vv~P~s~eeV~~iv~~a~~~~~~v~~~ 180 (572)
.+.|..||..++++++.++.+.|++.+++....
T Consensus 122 ~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~i 154 (190)
T KOG3282|consen 122 CGQAKIVVKAESEEELMELQKDAKKLGLYTHLI 154 (190)
T ss_pred cCCceEEEEcCCHHHHHHHHHHHHHcCCcEEEE
Confidence 368999999999999999999999999876643
No 63
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.75 E-value=83 Score=33.34 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEE
Q 008252 159 SEDEVSKIVKCCDKHKVPIIPY 180 (572)
Q Consensus 159 s~eeV~~iv~~a~~~~~~v~~~ 180 (572)
|.+|+++||++|+++||.|+|-
T Consensus 84 T~~di~eiv~yA~~rgI~VIPE 105 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPE 105 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEe
Confidence 8999999999999999999985
No 64
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=20.48 E-value=1e+02 Score=29.55 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=20.6
Q ss_pred HHHHHHHHHhCCCCEEEECCCCCC
Q 008252 163 VSKIVKCCDKHKVPIIPYGGATSI 186 (572)
Q Consensus 163 V~~iv~~a~~~~~~v~~~GgG~s~ 186 (572)
..+.+++|+++++|+++.++|.+.
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~ 101 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDP 101 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCch
Confidence 345678899999999999999885
No 65
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=20.30 E-value=87 Score=33.07 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEE
Q 008252 159 SEDEVSKIVKCCDKHKVPIIPY 180 (572)
Q Consensus 159 s~eeV~~iv~~a~~~~~~v~~~ 180 (572)
|.+|+++||++|++++|.|+|-
T Consensus 68 T~~di~eiv~yA~~rgI~vIPE 89 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPE 89 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEe
Confidence 9999999999999999999985
Done!