Your job contains 1 sequence.
>008253
MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGP
YDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPW
SGDWLKWDPISSGEGDLQLDDMAESFTASTKVSKTVKTINFASVIDSIPSHSFRVNDLIY
GTQAVSHSRDSGKSNLFVAGANEKSVASNGVSENRRRLDILHETDQNSLHNAPLNNQSSS
CENNRESGSPSAFPETIINTEDIESQPTIIEEDDVAEKSFTAKETERDDQNTKHGISSHA
VDLVLSKEIVKCPALTGEIELGAACNVDNKLEGDTLPDTFHSSACHNEESKTAESSGVDF
DSQNVAMGEVGMKIDIKDREDASVALDNVSLTDNVIEREHFRELVDVVSGQNLLQGSHDE
MDNKNGTSFANHETEVTMEELRDGERLREPGDGRLLADKISIQESCTEMIVKDDSSVANH
EACEEVMVEKQKNGVQFREPGERLITGQNLFLDSSKDFSVKENSSDANQEGLDDAKMEEQ
IHGEADSETDRPTLVPCVSGKYYFLKSLFYQY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008253
(572 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2168068 - symbol:GAF1 "AT5G59980" species:3702... 598 2.3e-62 2
UNIPROTKB|E1BZ65 - symbol:RPP30 "Uncharacterized protein"... 237 4.1e-19 1
UNIPROTKB|F1SCX5 - symbol:RPP30 "Uncharacterized protein"... 236 5.3e-19 1
UNIPROTKB|Q3SZ21 - symbol:RPP30 "Ribonuclease P protein s... 234 8.6e-19 1
UNIPROTKB|J9NSV8 - symbol:RPP30 "Uncharacterized protein"... 234 8.6e-19 1
UNIPROTKB|F1MDQ8 - symbol:RPP30 "Ribonuclease P protein s... 231 1.8e-18 1
RGD|1595116 - symbol:Rpp30 "ribonuclease P/MRP subunit" s... 230 2.3e-18 1
UNIPROTKB|P78346 - symbol:RPP30 "Ribonuclease P protein s... 229 3.0e-18 1
MGI|MGI:1859683 - symbol:Rpp30 "ribonuclease P/MRP 30 sub... 226 6.3e-18 1
UNIPROTKB|Q5VU11 - symbol:RPP30 "Ribonuclease P protein s... 221 2.2e-17 1
ZFIN|ZDB-GENE-050320-45 - symbol:rpp30 "ribonuclease P/MR... 211 2.7e-16 1
UNIPROTKB|Q5VU10 - symbol:RPP30 "Ribonuclease P protein s... 183 2.8e-13 1
FB|FBgn0022246 - symbol:Rpp30 "RNaseP protein p30" specie... 181 2.4e-11 1
DICTYBASE|DDB_G0269980 - symbol:drpp30 "RNase MRP protein... 165 3.5e-09 1
POMBASE|SPAC3A12.04c - symbol:SPAC3A12.04c "RNase P and R... 156 5.2e-09 1
ASPGD|ASPL0000043636 - symbol:AN1486 species:162425 "Emer... 161 5.7e-09 1
SGD|S000001104 - symbol:RPP1 "Subunit of both RNase MRP a... 144 4.3e-07 1
WB|WBGene00019264 - symbol:H35B03.2 species:6239 "Caenorh... 135 8.7e-06 1
UNIPROTKB|G4N6F7 - symbol:MGG_03733 "Ribonuclease P/MRP p... 127 1.3e-05 2
SGD|S000002435 - symbol:REG1 "Regulatory subunit of type ... 130 0.00012 1
TAIR|locus:2098443 - symbol:AT3G28770 "AT3G28770" species... 125 0.00094 1
>TAIR|locus:2168068 [details] [associations]
symbol:GAF1 "AT5G59980" species:3702 "Arabidopsis
thaliana" [GO:0000213 "tRNA-intron endonuclease activity"
evidence=ISS] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008033 "tRNA processing"
evidence=ISS] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009553
"embryo sac development" evidence=IMP] [GO:0048868 "pollen tube
development" evidence=IMP] [GO:0008295 "spermidine biosynthetic
process" evidence=RCA] InterPro:IPR002738 InterPro:IPR016195
Pfam:PF01876 GO:GO:0005739 GO:GO:0005634 EMBL:CP002688
GO:GO:0008033 GO:GO:0009553 GO:GO:0004540 GO:GO:0048868
SUPFAM:SSF89550 KO:K03539 PANTHER:PTHR13031 IPI:IPI00938888
RefSeq:NP_001154789.1 UniGene:At.29195 ProteinModelPortal:F4JXF0
PRIDE:F4JXF0 EnsemblPlants:AT5G59980.2 GeneID:836120
KEGG:ath:AT5G59980 OMA:DEMHITE ArrayExpress:F4JXF0 Uniprot:F4JXF0
Length = 705
Score = 598 (215.6 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
Identities = 117/229 (51%), Positives = 164/229 (71%)
Query: 1 MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGP 60
M+KAAI+RG+YFE+ YSD+++D Q RRQ+ISNAKLLVDWTRGKNLI+SSGA SVTELRGP
Sbjct: 165 MVKAAIQRGIYFEIKYSDILMDAQTRRQVISNAKLLVDWTRGKNLIISSGAPSVTELRGP 224
Query: 61 YDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPW 120
DV NL LLG+S ERA+AA+SKNCR +I+ L+KK FH+E +RVE +S+G+ F ++P
Sbjct: 225 NDVINLMFLLGLSAERARAAISKNCRNMIAKVLKKKRFHKEAVRVELLSAGDTFSLEQPL 284
Query: 121 SGDWLKWDPISSGEGDLQLDDMAESFTAXXXXXXXXX-XINFASVIDSIPSHSFRVNDLI 179
S D +KWD +SSGEGD+ LDD+A++F A I+F SV+D +P H FRV D++
Sbjct: 285 SEDCMKWDRLSSGEGDMLLDDLAKAFDATNVVAHKSSKAIDFTSVLDGLPKHGFRVKDIV 344
Query: 180 YGTQAVSHSRDSGKSNLFVAGANEKS---VASNGVSENRRRLDILHETD 225
GT++V+ + + V +N+ S +A+ +N R ++ + + D
Sbjct: 345 -GTESVTQPSAAKVIDTQVHSSNQVSELRMATASSDDNLREIETISQID 392
Score = 57 (25.1 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
Identities = 53/234 (22%), Positives = 87/234 (37%)
Query: 338 DTFHSSACHNEESKTAESSGVDFDSQNVAMGEVGMKIDIKDREDASVALDN-VSLTDNVI 396
DT S+ E + A +S D N+ E +ID+ ED DN V T NV+
Sbjct: 359 DTQVHSSNQVSELRMATASSDD----NLREIETISQIDMLMSED-----DNKVEPTTNVL 409
Query: 397 EREHFR-ELVDVVSGQNLLQGSHDEMDNKNGTSFANH---ETEVTMEELRDGERLREPGD 452
+ E F GQ +L + N+ T F ++E + + E E G
Sbjct: 410 KEEAFALRKCSASHGQGIL------VQNQTATPFTLTRCTKSEAASDVSMNIESTSEGGS 463
Query: 453 GRLLADKISIQESCTEMIVKDDSSVANHEACEEVMVEKQKNGVQFREPGERLITGQNLFL 512
I +S E+ +++ + +E E+ G + +G + +
Sbjct: 464 MSPSKSDHGIPQSPVEVNNMGNAAFEEEASVDENSKERATTGHASNDEMHITESGHHASI 523
Query: 513 DSSKDFSVKEN------------SSDANQEGLDDAKMEEQIHGEADSETDRPTL 554
D K E+ SS+AN + + ME+Q+H DS+ P L
Sbjct: 524 DDEKHIPEPEHLTSIADEMKIDCSSEANHDEYMEVTMEDQMHETGDSKIILPNL 577
Score = 54 (24.1 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 219 DILHETDQNSLHNAPLNNQSSSCENNRESGSPSAFPETIINTED----IESQPTIIEEDD 274
D +HET + + L+++++ + ESG S P+ ++ D +ES T +EE+
Sbjct: 562 DQMHETGDSKIILPNLSSETTDLLS--ESGK-SLSPDAVVQDHDEASRLESDETKLEEEA 618
Query: 275 VAEKSFTAKETERDDQNTKHGISSHAVD 302
T + T D++ + I V+
Sbjct: 619 SVPNHNTFEITMEDNKVEELTIEDEKVE 646
Score = 52 (23.4 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 375 DIKDREDASVALDN---VSLTDN-----VIEREHFRELVDVVSGQNLLQGSHDEMDNKNG 426
+ K E+ASV N +++ DN IE E + S Q +Q S + D K+G
Sbjct: 611 ETKLEEEASVPNHNTFEITMEDNKVEELTIEDEKVEKTETEASHQAQVQSSENNNDTKSG 670
Query: 427 TSFANHETEVTMEELR 442
+ A + V + +LR
Sbjct: 671 KTQAKR-SRVRLPQLR 685
Score = 44 (20.5 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 36/157 (22%), Positives = 62/157 (39%)
Query: 340 FHSSACHNEESKTAESSG-VDFDSQNVAMGEVGMKID----IKDREDASVALDNVSLTDN 394
F A +E SK ++G D ++ ID I + E + D + + D
Sbjct: 488 FEEEASVDENSKERATTGHASNDEMHITESGHHASIDDEKHIPEPEHLTSIADEMKI-DC 546
Query: 395 VIEREHFRELVDVVSGQNLLQGSHDEMDNKNGTSFANHETEVTMEELRDGERLREPGDGR 454
E H E ++V + H+ D+K N +E T + L + + P
Sbjct: 547 SSEANH-DEYMEVTMEDQM----HETGDSK--IILPNLSSETT-DLLSESGKSLSPDAVV 598
Query: 455 LLADKISIQESCTEMIVKDDSSVANHEACEEVMVEKQ 491
D+ S ES E +++++SV NH E M + +
Sbjct: 599 QDHDEASRLES-DETKLEEEASVPNHNTFEITMEDNK 634
Score = 38 (18.4 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 16/75 (21%), Positives = 32/75 (42%)
Query: 219 DILHETDQNSLHNAPLNNQSSSCENNRESGSPSAFPETII---NTEDIESQPTIIEEDDV 275
D+L E+ ++ +A + + + + ES E + NT +I + +EE +
Sbjct: 583 DLLSESGKSLSPDAVVQDHDEA--SRLESDETKLEEEASVPNHNTFEITMEDNKVEELTI 640
Query: 276 AEKSFTAKETERDDQ 290
++ ETE Q
Sbjct: 641 EDEKVEKTETEASHQ 655
>UNIPROTKB|E1BZ65 [details] [associations]
symbol:RPP30 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
InterPro:IPR002738 InterPro:IPR016195 InterPro:IPR018130
Pfam:PF01876 PROSITE:PS00962 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0008033 GO:GO:0004540 SUPFAM:SSF89550 KO:K03539
OMA:TAFGIIS PANTHER:PTHR13031 GeneTree:ENSGT00390000000883
CTD:10556 EMBL:AADN02027737 IPI:IPI00584248 RefSeq:XP_421667.2
UniGene:Gga.9826 ProteinModelPortal:E1BZ65
Ensembl:ENSGALT00000010484 GeneID:423795 KEGG:gga:423795
NextBio:20826215 Uniprot:E1BZ65
Length = 267
Score = 237 (88.5 bits), Expect = 4.1e-19, P = 4.1e-19
Identities = 50/95 (52%), Positives = 63/95 (66%)
Query: 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
+ AI+RG+YFEL Y+ I D +RR ISNA L+ +GKN+++SS A ELRGPY
Sbjct: 142 VNMAIDRGIYFELLYTPAIKDSTMRRYTISNAISLMQICKGKNIVISSAAERPLELRGPY 201
Query: 62 DVANLSSLLGISMERAKAAVSKNCRALISNALRKK 96
DVANL L G+S AKAAVS NCRA I + +K
Sbjct: 202 DVANLGLLFGLSEGEAKAAVSTNCRATILHGETRK 236
>UNIPROTKB|F1SCX5 [details] [associations]
symbol:RPP30 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008033 "tRNA processing" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] InterPro:IPR002738
InterPro:IPR016195 Pfam:PF01876 GO:GO:0008033 GO:GO:0004540
SUPFAM:SSF89550 KO:K03539 OMA:TAFGIIS PANTHER:PTHR13031
GeneTree:ENSGT00390000000883 CTD:10556 EMBL:CT954288 EMBL:CU468426
RefSeq:XP_001924806.1 UniGene:Ssc.43882 ProteinModelPortal:F1SCX5
Ensembl:ENSSSCT00000011446 GeneID:100156540 KEGG:ssc:100156540
Uniprot:F1SCX5
Length = 268
Score = 236 (88.1 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 60/119 (50%), Positives = 71/119 (59%)
Query: 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
I AI+RGV FEL YS I D +RR ISNA L+ +GKN+I+SS A E+RGPY
Sbjct: 142 INVAIDRGVAFELVYSPAIKDSTMRRYTISNALNLMQICKGKNVIVSSAAERPLEIRGPY 201
Query: 62 DVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHFHRETIRVEPISSGEQFDSKEP 119
DVANL L G+S AKAAVS NCRA L+ RK F + +P SS E D P
Sbjct: 202 DVANLGLLFGLSESDAKAAVSTNCRAVLLHGETRKTAFGIISTVKKPRSS-ETDDESLP 259
>UNIPROTKB|Q3SZ21 [details] [associations]
symbol:RPP30 "Ribonuclease P protein subunit p30"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0004526 "ribonuclease P activity" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] InterPro:IPR002738
InterPro:IPR016195 Pfam:PF01876 GO:GO:0005730 GO:GO:0008033
SUPFAM:SSF89550 GO:GO:0004526 eggNOG:COG1603 KO:K03539
HOGENOM:HOG000157793 PANTHER:PTHR13031 EMBL:BC103240
IPI:IPI00713952 RefSeq:NP_001030538.1 UniGene:Bt.48969
ProteinModelPortal:Q3SZ21 STRING:Q3SZ21 GeneID:615098
KEGG:bta:615098 CTD:10556 HOVERGEN:HBG010226 InParanoid:Q3SZ21
OrthoDB:EOG4D52Z9 NextBio:20899443 Uniprot:Q3SZ21
Length = 268
Score = 234 (87.4 bits), Expect = 8.6e-19, P = 8.6e-19
Identities = 58/116 (50%), Positives = 70/116 (60%)
Query: 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
I AI+RGV FEL YS I D +RR ISNA L+ +GKN+I+SS A E+RGPY
Sbjct: 142 INVAIDRGVGFELLYSPAIKDSTMRRYTISNALNLMQVCKGKNVIISSAAERPLEIRGPY 201
Query: 62 DVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHFHRETIRVEPISSGEQFDS 116
DVANL L G+S AKAAVS NCRA L+ RK F + +P +S DS
Sbjct: 202 DVANLGLLFGLSESDAKAAVSTNCRAVLLHGETRKTAFGIISTVKKPRTSEADDDS 257
>UNIPROTKB|J9NSV8 [details] [associations]
symbol:RPP30 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR002738 InterPro:IPR016195 Pfam:PF01876 GO:GO:0008033
GO:GO:0004540 SUPFAM:SSF89550 KO:K03539 OMA:TAFGIIS
PANTHER:PTHR13031 GeneTree:ENSGT00390000000883 CTD:10556
EMBL:AAEX03015400 RefSeq:XP_534959.2 ProteinModelPortal:J9NSV8
Ensembl:ENSCAFT00000046379 GeneID:477763 KEGG:cfa:477763
Uniprot:J9NSV8
Length = 268
Score = 234 (87.4 bits), Expect = 8.6e-19, P = 8.6e-19
Identities = 53/98 (54%), Positives = 63/98 (64%)
Query: 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
I A++RGV FEL YS I D +RR ISNA L+ +GKN+I+SS A E+RGPY
Sbjct: 142 INVAVDRGVCFELVYSPAIKDSTMRRYTISNALNLMQVCKGKNVIISSAAERPLEIRGPY 201
Query: 62 DVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHF 98
DVANL L G+S AKAAVS NCRA L+ RK F
Sbjct: 202 DVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAF 239
>UNIPROTKB|F1MDQ8 [details] [associations]
symbol:RPP30 "Ribonuclease P protein subunit p30"
species:9913 "Bos taurus" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR002738 InterPro:IPR016195 Pfam:PF01876 GO:GO:0008033
GO:GO:0004540 SUPFAM:SSF89550 OMA:TAFGIIS PANTHER:PTHR13031
GeneTree:ENSGT00390000000883 IPI:IPI00713952 UniGene:Bt.48969
EMBL:DAAA02058784 ProteinModelPortal:F1MDQ8
Ensembl:ENSBTAT00000003871 Uniprot:F1MDQ8
Length = 268
Score = 231 (86.4 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 57/116 (49%), Positives = 70/116 (60%)
Query: 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
I AI+RGV FEL YS I D +RR ISNA L+ +GKN+I+SS A E+RGPY
Sbjct: 142 INVAIDRGVGFELLYSPAIKDSTMRRYTISNALNLMQVCKGKNVIISSAAERPLEIRGPY 201
Query: 62 DVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHFHRETIRVEPISSGEQFDS 116
DVANL L G+S AKAA+S NCRA L+ RK F + +P +S DS
Sbjct: 202 DVANLGLLFGLSESDAKAALSTNCRAVLLHGETRKTAFGIISTVKKPRTSEADDDS 257
>RGD|1595116 [details] [associations]
symbol:Rpp30 "ribonuclease P/MRP subunit" species:10116 "Rattus
norvegicus" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] InterPro:IPR002738
InterPro:IPR016195 Pfam:PF01876 RGD:1595116 GO:GO:0008033
GO:GO:0004540 SUPFAM:SSF89550 KO:K03539 OMA:TAFGIIS
PANTHER:PTHR13031 GeneTree:ENSGT00390000000883 CTD:10556
OrthoDB:EOG4D52Z9 IPI:IPI00368202 RefSeq:NP_001178012.1
UniGene:Rn.17421 ProteinModelPortal:D3ZU51
Ensembl:ENSRNOT00000025412 GeneID:685332 KEGG:rno:685332
UCSC:RGD:1595116 NextBio:729460 Uniprot:D3ZU51
Length = 268
Score = 230 (86.0 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 56/116 (48%), Positives = 68/116 (58%)
Query: 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
I AIERG+ FEL Y I D +RR ISNA L+ +GKN+ILSS A E+RGPY
Sbjct: 142 INVAIERGLGFELVYGPAIRDATMRRYTISNALNLMQICKGKNVILSSAAERPLEIRGPY 201
Query: 62 DVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHFHRETIRVEPISSGEQFDS 116
DVANL L G+S KAAVS NCRA + RK F + +P SS + +S
Sbjct: 202 DVANLGLLFGLSENEGKAAVSTNCRAAFLHGETRKTAFGIISTVKKPRSSEAEDES 257
>UNIPROTKB|P78346 [details] [associations]
symbol:RPP30 "Ribonuclease P protein subunit p30"
species:9606 "Homo sapiens" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0004526 "ribonuclease P activity" evidence=IEA]
[GO:0005655 "nucleolar ribonuclease P complex" evidence=TAS]
[GO:0005634 "nucleus" evidence=TAS] InterPro:IPR002738
InterPro:IPR016195 Pfam:PF01876 EMBL:CH471066 GO:GO:0008033
EMBL:AL590622 SUPFAM:SSF89550 GO:GO:0005655 GO:GO:0004526
eggNOG:COG1603 KO:K03539 HOGENOM:HOG000157793 PANTHER:PTHR13031
CTD:10556 HOVERGEN:HBG010226 OrthoDB:EOG4D52Z9 EMBL:U77665
EMBL:AK312900 EMBL:AK225532 EMBL:BC006991 IPI:IPI00019196
IPI:IPI00876864 RefSeq:NP_001098016.1 RefSeq:NP_006404.1
UniGene:Hs.139120 ProteinModelPortal:P78346 IntAct:P78346
STRING:P78346 PhosphoSite:P78346 DMDM:13124514 PaxDb:P78346
PRIDE:P78346 DNASU:10556 Ensembl:ENST00000371703
Ensembl:ENST00000413330 GeneID:10556 KEGG:hsa:10556 UCSC:uc009xtx.3
GeneCards:GC10P092621 HGNC:HGNC:17688 HPA:HPA037578 MIM:606115
neXtProt:NX_P78346 PharmGKB:PA134876345 PhylomeDB:P78346
GenomeRNAi:10556 NextBio:40053 ArrayExpress:P78346 Bgee:P78346
CleanEx:HS_RPP30 Genevestigator:P78346 GermOnline:ENSG00000148688
Uniprot:P78346
Length = 268
Score = 229 (85.7 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 55/114 (48%), Positives = 70/114 (61%)
Query: 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
I AI+RG+ FEL YS I D +RR IS+A L+ +GKN+I+SS A E+RGPY
Sbjct: 142 INVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQICKGKNVIISSAAERPLEIRGPY 201
Query: 62 DVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHFHR-ETIRVEPISSGEQ 113
DVANL L G+S AKAAVS NCRA L+ RK F T++ S G++
Sbjct: 202 DVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAFGIISTVKKPRPSEGDE 255
>MGI|MGI:1859683 [details] [associations]
symbol:Rpp30 "ribonuclease P/MRP 30 subunit" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004526
"ribonuclease P activity" evidence=IEA] [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR002738 InterPro:IPR016195 Pfam:PF01876 MGI:MGI:1859683
GO:GO:0005730 GO:GO:0008033 SUPFAM:SSF89550 GO:GO:0004526
eggNOG:COG1603 KO:K03539 HOGENOM:HOG000157793 OMA:TAFGIIS
PANTHER:PTHR13031 GeneTree:ENSGT00390000000883 CTD:10556
HOVERGEN:HBG010226 OrthoDB:EOG4D52Z9 EMBL:U95123 IPI:IPI00134346
RefSeq:NP_062301.3 UniGene:Mm.277891 ProteinModelPortal:O88796
STRING:O88796 PhosphoSite:O88796 PaxDb:O88796 PRIDE:O88796
Ensembl:ENSMUST00000025714 GeneID:54364 KEGG:mmu:54364
UCSC:uc008hhg.2 InParanoid:O88796 NextBio:311154 Bgee:O88796
CleanEx:MM_RPP30 Genevestigator:O88796
GermOnline:ENSMUSG00000024800 Uniprot:O88796
Length = 268
Score = 226 (84.6 bits), Expect = 6.3e-18, P = 6.3e-18
Identities = 51/98 (52%), Positives = 61/98 (62%)
Query: 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
+ AIERG+ FEL Y I D +RR ISNA L+ +GKN+ILSS A E+RGPY
Sbjct: 142 VNVAIERGLGFELVYGPAIRDATMRRYTISNALNLMQICKGKNVILSSAAERPLEIRGPY 201
Query: 62 DVANLSSLLGISMERAKAAVSKNCRAL-ISNALRKKHF 98
DVANL L G+S KAAVS NCRA+ + RK F
Sbjct: 202 DVANLGLLFGLSENDGKAAVSTNCRAVFLHGETRKTAF 239
>UNIPROTKB|Q5VU11 [details] [associations]
symbol:RPP30 "Ribonuclease P protein subunit p30"
species:9606 "Homo sapiens" [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
InterPro:IPR002738 InterPro:IPR016195 Pfam:PF01876 GO:GO:0008033
GO:GO:0004540 EMBL:AL590622 SUPFAM:SSF89550 HOGENOM:HOG000157793
PANTHER:PTHR13031 HOVERGEN:HBG010226 UniGene:Hs.139120
HGNC:HGNC:17688 IPI:IPI00478229 Ensembl:ENST00000277882
Uniprot:Q5VU11
Length = 254
Score = 221 (82.9 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 48/88 (54%), Positives = 59/88 (67%)
Query: 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
I AI+RG+ FEL YS I D +RR IS+A L+ +GKN+I+SS A E+RGPY
Sbjct: 164 INVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQICKGKNVIISSAAERPLEIRGPY 223
Query: 62 DVANLSSLLGISMERAKAAVSKNCRALI 89
DVANL L G+S AKAAVS NCRA +
Sbjct: 224 DVANLGLLFGLSESDAKAAVSTNCRAAL 251
>ZFIN|ZDB-GENE-050320-45 [details] [associations]
symbol:rpp30 "ribonuclease P/MRP 30 subunit"
species:7955 "Danio rerio" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002738 InterPro:IPR016195
InterPro:IPR018130 Pfam:PF01876 PROSITE:PS00962
ZFIN:ZDB-GENE-050320-45 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0008033 GO:GO:0004540 SUPFAM:SSF89550 eggNOG:COG1603
KO:K03539 HOGENOM:HOG000157793 OMA:TAFGIIS PANTHER:PTHR13031
GeneTree:ENSGT00390000000883 CTD:10556 HOVERGEN:HBG010226
OrthoDB:EOG4D52Z9 EMBL:CU607074 EMBL:BC091449 IPI:IPI00495944
RefSeq:NP_001013497.1 UniGene:Dr.80180 STRING:Q5BJK2 DNASU:541352
Ensembl:ENSDART00000037601 GeneID:541352 KEGG:dre:541352
InParanoid:Q5BJK2 NextBio:20879166 Uniprot:Q5BJK2
Length = 265
Score = 211 (79.3 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 43/88 (48%), Positives = 60/88 (68%)
Query: 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
+ AI+RG++FE Y+ I D RR I+NA L++ +GKN+I+SSGA ELRGPY
Sbjct: 138 VNGAIDRGIFFETCYAAAIRDSITRRYTIANAICLMEICKGKNVIVSSGAERQLELRGPY 197
Query: 62 DVANLSSLLGISMERAKAAVSKNCRALI 89
D+ANL + +S AKAAVS NCR+++
Sbjct: 198 DIANLGLVFSLSEGDAKAAVSTNCRSVL 225
>UNIPROTKB|Q5VU10 [details] [associations]
symbol:RPP30 "Ribonuclease P protein subunit p30"
species:9606 "Homo sapiens" [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
InterPro:IPR002738 InterPro:IPR016195 Pfam:PF01876 GO:GO:0008033
GO:GO:0004540 EMBL:AL590622 SUPFAM:SSF89550 HOGENOM:HOG000157793
PANTHER:PTHR13031 HOVERGEN:HBG010226 UniGene:Hs.139120
HGNC:HGNC:17688 Ensembl:ENST00000414836 Uniprot:Q5VU10
Length = 212
Score = 183 (69.5 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 51/114 (44%), Positives = 64/114 (56%)
Query: 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
I AI+RG+ FEL YS I D +RR IS+A L+ +GK L E+RGPY
Sbjct: 96 INVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQICKGKPL----------EIRGPY 145
Query: 62 DVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHFHR-ETIRVEPISSGEQ 113
DVANL L G+S AKAAVS NCRA L+ RK F T++ S G++
Sbjct: 146 DVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAFGIISTVKKPRPSEGDE 199
>FB|FBgn0022246 [details] [associations]
symbol:Rpp30 "RNaseP protein p30" species:7227 "Drosophila
melanogaster" [GO:0008033 "tRNA processing" evidence=IEA;ISS]
[GO:0030677 "ribonuclease P complex" evidence=ISS] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR002738 InterPro:IPR016195 Pfam:PF01876
EMBL:AE014134 GO:GO:0022008 GO:GO:0008033 GO:GO:0004540
SUPFAM:SSF89550 eggNOG:COG1603 KO:K03539 PANTHER:PTHR13031
GeneTree:ENSGT00390000000883 OMA:RITILYV CTD:10556 GO:GO:0030677
EMBL:AY075315 RefSeq:NP_524749.1 UniGene:Dm.1833 IntAct:Q9VPM0
MINT:MINT-899899 STRING:Q9VPM0 EnsemblMetazoa:FBtr0078143
GeneID:44392 KEGG:dme:Dmel_CG11606 UCSC:CG11606-RA
FlyBase:FBgn0022246 InParanoid:Q9VPM0 OrthoDB:EOG4KWH8J
GenomeRNAi:44392 NextBio:837231 Uniprot:Q9VPM0
Length = 297
Score = 181 (68.8 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 38/90 (42%), Positives = 56/90 (62%)
Query: 3 KAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYD 62
+ A+ RG++FE+ Y+ I D R+ MI A+ + KN+I SSGA+ +LRGPYD
Sbjct: 145 QVAVRRGMFFEIKYAPSICDSNNRKDMIKIAQNYCTKGKSKNVIFSSGAAHEFQLRGPYD 204
Query: 63 VANLSSLLGISMERAKAAVSKNCRALISNA 92
VANL+ + G+S ++ K AV +CR L A
Sbjct: 205 VANLAFIFGLSEDQGKNAVDGHCRELFLKA 234
>DICTYBASE|DDB_G0269980 [details] [associations]
symbol:drpp30 "RNase MRP protein subunit"
species:44689 "Dictyostelium discoideum" [GO:0004526 "ribonuclease
P activity" evidence=IEA;IDA] [GO:0008033 "tRNA processing"
evidence=IEA;IDA] [GO:0005655 "nucleolar ribonuclease P complex"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IPI] [GO:0000049
"tRNA binding" evidence=IDA] [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0000171 "ribonuclease MRP activity" evidence=ISS] [GO:0006364
"rRNA processing" evidence=ISS] [GO:0000172 "ribonuclease MRP
complex" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR002738 InterPro:IPR016195 Pfam:PF01876
dictyBase:DDB_G0269980 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0008033 GO:GO:0000049 GO:GO:0006364 SUPFAM:SSF89550
GO:GO:0005655 GO:GO:0000172 GO:GO:0004526 KO:K03539
PANTHER:PTHR13031 EMBL:AY940192 RefSeq:XP_646444.1
ProteinModelPortal:Q3ZE13 EnsemblProtists:DDB0232069 GeneID:8617403
KEGG:ddi:DDB_G0269980 eggNOG:NOG273171 OMA:VICKTMA Uniprot:Q3ZE13
Length = 366
Score = 165 (63.1 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 36/96 (37%), Positives = 58/96 (60%)
Query: 2 IKAAIERGVYFELTYSDLI-LDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGP 60
++ I +G++ E+ Y +L +D R A LV + GKN+ILSS S T LR P
Sbjct: 146 VRQCIAKGIFIEILYGNLFGIDAD-RIAFFQIASSLVRSSFGKNIILSSSGKSSTTLRSP 204
Query: 61 YDVANLSSLLGISMERAKAAVSKNCRALISNALRKK 96
YD++NL L G++ ++AKAAVSK+ + +A+ ++
Sbjct: 205 YDLSNLGHLFGLTFDQAKAAVSKHPHTAVLHAITRR 240
>POMBASE|SPAC3A12.04c [details] [associations]
symbol:SPAC3A12.04c "RNase P and RNase MRP subunit p30
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000172
"ribonuclease MRP complex" evidence=ISO] [GO:0005655 "nucleolar
ribonuclease P complex" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0008033 "tRNA processing" evidence=ISO]
[GO:0000171 "ribonuclease MRP activity" evidence=ISO] [GO:0004526
"ribonuclease P activity" evidence=ISO] InterPro:IPR002738
InterPro:IPR016195 Pfam:PF01876 PomBase:SPAC3A12.04c EMBL:CU329670
GO:GO:0008033 GO:GO:0006364 SUPFAM:SSF89550 GO:GO:0005655
GO:GO:0000172 GO:GO:0004526 eggNOG:COG1603 KO:K03539 PIR:T38672
RefSeq:NP_593330.1 ProteinModelPortal:P87120 STRING:P87120
EnsemblFungi:SPAC3A12.04c.1 GeneID:2543062 KEGG:spo:SPAC3A12.04c
HOGENOM:HOG000157793 OMA:TAFGIIS OrthoDB:EOG4KPXMF NextBio:20804091
PANTHER:PTHR13031 Uniprot:P87120
Length = 235
Score = 156 (60.0 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 31/99 (31%), Positives = 61/99 (61%)
Query: 5 AIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVA 64
A+ R + E++YS + DV RR +I+NA LV TRG+ +I++S + E R +DV
Sbjct: 133 AVSRDIGIEISYSSGLRDVSNRRNLITNATSLVRATRGRGIIVTSETRTPLECRAGFDVI 192
Query: 65 NLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETI 103
NL++ + ++A+ +V ++CR+++ +A ++ +R +
Sbjct: 193 NLATFWDLKQDQARKSVGESCRSVLLHAETRRDTYRSIL 231
>ASPGD|ASPL0000043636 [details] [associations]
symbol:AN1486 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] InterPro:IPR002738 InterPro:IPR016195 Pfam:PF01876
EMBL:BN001307 GO:GO:0008033 GO:GO:0004540 EMBL:AACD01000022
SUPFAM:SSF89550 eggNOG:COG1603 KO:K03539 HOGENOM:HOG000157793
OrthoDB:EOG4KPXMF PANTHER:PTHR13031 RefSeq:XP_659090.1
ProteinModelPortal:Q5BD94 EnsemblFungi:CADANIAT00008108
GeneID:2874596 KEGG:ani:AN1486.2 OMA:QVISHAR Uniprot:Q5BD94
Length = 306
Score = 161 (61.7 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 39/107 (36%), Positives = 59/107 (55%)
Query: 1 MIKAAIERGVYFELTYSDLILD--VQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELR 58
M+ AAI RG+ FE+ Y + ++ RR +I NA L+ RG+ +I+SS A +R
Sbjct: 119 MLSAAIARGIRFEICYGPGVTGSGLEARRNLIGNAMALIRAARGRGIIVSSEAKRALGVR 178
Query: 59 GPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRV 105
P+DV NL+ + G+S E K A+S R + + A K+ R I V
Sbjct: 179 APFDVINLACVWGLSQELGKEAISAETRKVTALARLKRTSWRGIIDV 225
>SGD|S000001104 [details] [associations]
symbol:RPP1 "Subunit of both RNase MRP and nuclear RNase P"
species:4932 "Saccharomyces cerevisiae" [GO:0004526 "ribonuclease P
activity" evidence=IEA;IDA;IMP] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000171 "ribonuclease MRP activity" evidence=IMP;IDA]
[GO:0008033 "tRNA processing" evidence=IEA;IDA;IMP] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005655 "nucleolar ribonuclease P
complex" evidence=IDA;IPI] [GO:0034965 "intronic box C/D snoRNA
processing" evidence=IDA] [GO:0006379 "mRNA cleavage" evidence=IPI]
[GO:0000172 "ribonuclease MRP complex" evidence=IDA;IPI]
[GO:0006364 "rRNA processing" evidence=IEA;IDA;IMP] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR002738
InterPro:IPR016195 Pfam:PF01876 SGD:S000001104 EMBL:BK006934
GO:GO:0008033 GO:GO:0006364 GO:GO:0006379 EMBL:U00061
SUPFAM:SSF89550 GO:GO:0005655 GO:GO:0000172 GO:GO:0004526
GO:GO:0034965 eggNOG:COG1603 KO:K03539 HOGENOM:HOG000157793
OrthoDB:EOG4KPXMF PANTHER:PTHR13031 EMBL:U95757 PIR:S46710
RefSeq:NP_011929.1 ProteinModelPortal:P38786 DIP:DIP-5590N
IntAct:P38786 MINT:MINT-501586 STRING:P38786 PaxDb:P38786
EnsemblFungi:YHR062C GeneID:856459 KEGG:sce:YHR062C CYGD:YHR062c
GeneTree:ENSGT00390000000883 OMA:RITILYV NextBio:982102
Genevestigator:P38786 GermOnline:YHR062C Uniprot:P38786
Length = 293
Score = 144 (55.7 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
I + + RGV E+ Y + DVQ RRQ +SN + ++ +R + +++ SGA S E R
Sbjct: 146 ICSCVNRGVKLEIVYGYALRDVQARRQFVSNVRSVIRSSRSRGIVIGSGAMSPLECRNIL 205
Query: 62 DVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETI 103
V +L LG+ +R A+ ++ N + H++TI
Sbjct: 206 GVTSLIKNLGLPSDRCSKAMGDLASLVLLNGRLRNKSHKQTI 247
>WB|WBGene00019264 [details] [associations]
symbol:H35B03.2 species:6239 "Caenorhabditis elegans"
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] InterPro:IPR002738 InterPro:IPR016195
Pfam:PF01876 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0000003 GO:GO:0008033 GO:GO:0004540
SUPFAM:SSF89550 eggNOG:COG1603 KO:K03539 PANTHER:PTHR13031
GeneTree:ENSGT00390000000883 EMBL:FO080871 PIR:T33715
RefSeq:NP_500852.1 UniGene:Cel.18199 ProteinModelPortal:Q9TYZ2
PaxDb:Q9TYZ2 PRIDE:Q9TYZ2 EnsemblMetazoa:H35B03.2a GeneID:177349
KEGG:cel:CELE_H35B03.2 UCSC:H35B03.2a CTD:177349 WormBase:H35B03.2a
HOGENOM:HOG000021740 InParanoid:Q9TYZ2 OMA:HMEFTPM NextBio:896388
ArrayExpress:Q9TYZ2 Uniprot:Q9TYZ2
Length = 393
Score = 135 (52.6 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 9 GVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSS 68
GV++E+ Y++ ++ R+ + N ++L+ + KN+I SSGA ++ +LR P DV N+S
Sbjct: 222 GVFYEIAYAESLMPAT-RKNTLFNGRVLIRSLKSKNIIFSSGAETMLDLRSPVDVMNMSL 280
Query: 69 LLGISMERAKAAVS 82
L G++ A+ +S
Sbjct: 281 LWGVANNEARKMIS 294
>UNIPROTKB|G4N6F7 [details] [associations]
symbol:MGG_03733 "Ribonuclease P/MRP protein subunit RPP1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR002738
InterPro:IPR016195 Pfam:PF01876 GO:GO:0008033 GO:GO:0004540
EMBL:CM001234 SUPFAM:SSF89550 KO:K03539 PANTHER:PTHR13031
RefSeq:XP_003716146.1 EnsemblFungi:MGG_03733T0 GeneID:2676784
KEGG:mgr:MGG_03733 Uniprot:G4N6F7
Length = 314
Score = 127 (49.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 37/108 (34%), Positives = 58/108 (53%)
Query: 2 IKAAIERGVYFELTYSDLI--LDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTE--L 57
+ AA+ RGV E+ Y+ I D + R ++N L ++G+ LI+SSGA++ + L
Sbjct: 131 VMAAVRRGVRIEICYTQGIGARDSRARALFVANLVGLFRASKGRGLIVSSGAAAGSPRLL 190
Query: 58 RGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRV 105
R P DV NL ++ G+ ER +S N R ++ N K+ R I V
Sbjct: 191 RAPADVVNLLAVWGMGTERGLDTLSGNPRGVVVNEGIKRSAFRGVIDV 238
Score = 46 (21.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 396 IEREHFRELVDVVSGQNLLQGSHDEMDNKNGT 427
I+R FR ++DVV G L H + + GT
Sbjct: 227 IKRSAFRGVIDVVHGAGALD-CHGKGSDAAGT 257
>SGD|S000002435 [details] [associations]
symbol:REG1 "Regulatory subunit of type 1 protein phosphatase
Glc7p" species:4932 "Saccharomyces cerevisiae" [GO:0042149
"cellular response to glucose starvation" evidence=IMP] [GO:0008599
"protein phosphatase type 1 regulator activity" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007039 "vacuolar protein
catabolic process" evidence=IMP;IDA] [GO:0000164 "protein
phosphatase type 1 complex" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006109 "regulation of carbohydrate metabolic
process" evidence=IGI;TAS;IPI] [GO:0005977 "glycogen metabolic
process" evidence=TAS] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=TAS]
SGD:S000002435 GO:GO:0005634 GO:GO:0005773 GO:GO:0006109
EMBL:BK006938 GO:GO:0005977 GO:GO:0042149 GO:GO:0000122
GO:GO:0007039 InterPro:IPR013860 Pfam:PF08550 GO:GO:0008599
EMBL:X95966 GO:GO:0000164 EMBL:Z47814 EMBL:M33703 EMBL:M90540
EMBL:Z74324 PIR:S32613 RefSeq:NP_010311.1 ProteinModelPortal:Q00816
DIP:DIP-2513N IntAct:Q00816 MINT:MINT-648820 STRING:Q00816
PaxDb:Q00816 PeptideAtlas:Q00816 EnsemblFungi:YDR028C GeneID:851592
KEGG:sce:YDR028C CYGD:YDR028c eggNOG:NOG70919 OMA:WAKARNN
OrthoDB:EOG4NPBC1 NextBio:969075 Genevestigator:Q00816
GermOnline:YDR028C Uniprot:Q00816
Length = 1014
Score = 130 (50.8 bits), Expect = 0.00012, P = 0.00012
Identities = 84/396 (21%), Positives = 165/396 (41%)
Query: 190 DSGKSNLFVAGA----NEKSVA-SN-GVSENRRRLDILHETDQNSLHNAPLNNQ--SSSC 241
D G+ +L + A N +S A SN + EN D DQN N+P NN+ SS+
Sbjct: 376 DKGEEDLHLKSALHVQNNRSTAQSNKSILENSTN-DRKANLDQNL--NSPDNNRFPSSTS 432
Query: 242 ENNRESGSPSAFPETII--NTEDIESQPTI---IEEDDVAEKSFT-------AKETERDD 289
+NR++ + S +I+ N + ++PT I +D E+ +++ E DD
Sbjct: 433 SSNRDNENNSMGLSSILTSNPSEKSNKPTKNRHIHFNDRVEQCMALRYPASQSEDDESDD 492
Query: 290 QNTKH-GISSHAVDLVLSKEIVKCPALTGE-IELGAACNVDNKLEGDTLPDTFHSSACHN 347
+N ++ ++++A ++ A+ + I + +A NK D + SS+ H+
Sbjct: 493 ENKQYVDVNNNANVTTINNNRTPLLAIQHKSIPINSATEHLNKNTSDDDTSSQSSSSSHS 552
Query: 348 EESKTAESSGVDFDSQNVAMGEVGMKIDIKDREDASVALDNVSLTDNVIEREHFRELVDV 407
++ E G+ +++ + G+ I D N S+ + R H R ++ +
Sbjct: 553 DDE---EHGGLYINARFSRRSDSGVHSPITD---------NSSVASSTTSRAHVRPIIKL 600
Query: 408 VSGQNLLQGSHDEMDNKNGTSFAN---HETEVTM--EELRDGERLREPGDGRLL----AD 458
+ L GS +E DN + N H + + + D + L D
Sbjct: 601 LPDTTLNYGSDEESDNGEFNGYGNAVSHNVNTSRGYDYIYDYNSVYTGDTSSFLPVDSCD 660
Query: 459 KISIQESCTEMIVKDDSSVANHEACEEVMVEKQKNGVQFREPGERLIT---GQNLFLDSS 515
+ + E D + +N+E + K+K+ Q + T G ++ L
Sbjct: 661 IVDVPEGMDLQTAIADDNASNYEF-NNAVESKEKHVPQLHKASANNTTRQHGSHMLLYDD 719
Query: 516 KDFSVKENSSDANQEGLDDAKMEEQIHGEADSETDR 551
++S +SSD+ Q+ ++D++ E + + D+
Sbjct: 720 DNYS---SSSDSEQQFIEDSQYNSSDDEEEEDDDDQ 752
>TAIR|locus:2098443 [details] [associations]
symbol:AT3G28770 "AT3G28770" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009827 "plant-type cell wall modification"
evidence=RCA] [GO:0009860 "pollen tube growth" evidence=RCA]
EMBL:CP002686 GenomeReviews:BA000014_GR HSSP:P01096 eggNOG:NOG12793
EMBL:AP002057 InterPro:IPR009605 Pfam:PF06746 IPI:IPI00529324
RefSeq:NP_189519.1 UniGene:At.42736 ProteinModelPortal:Q9LH98
PaxDb:Q9LH98 PRIDE:Q9LH98 EnsemblPlants:AT3G28770.1 GeneID:822509
KEGG:ath:AT3G28770 TAIR:At3g28770 OMA:SKNEILM
ProtClustDB:CLSN2912834 Genevestigator:Q9LH98 Uniprot:Q9LH98
Length = 2081
Score = 125 (49.1 bits), Expect = 0.00094, P = 0.00094
Identities = 86/396 (21%), Positives = 167/396 (42%)
Query: 174 RVNDLIYGTQAVSHSRDSGKSNLFVAGANEKSVASNG--VSENRRRLDILHETDQNSLHN 231
+V DL G V + + V NEK V G + ++ ++ + D S
Sbjct: 245 KVEDLKEGNNVVENGETKENNGENVESNNEKEVEGQGESIGDSAIEKNLESKEDVKSEVE 304
Query: 232 APLNNQSSSCENNRESGSPSAFPETIINTEDIESQPTIIEEDDVAEKSFTAKETERDD-Q 290
A N+ SS EN E+ + TI N +++E Q IE+ D+ EK+ +KE + + +
Sbjct: 305 AAKNDGSSMTENLGEAQGNNGV-STIDNEKEVEGQGESIEDSDI-EKNLESKEDVKSEVE 362
Query: 291 NTKHGISSHAVDLVLSKEIVKCPALTGEIELGAACNVDNKLEGDTLPDTFHSSACHNEES 350
K+ SS ++ ++ + G + N +NK G++ D ++ ++E+
Sbjct: 363 AAKNAGSS------MTGKLEEAQRNNG-VSTNETMNSENKGSGESTNDKMVNATTNDEDH 415
Query: 351 K------TAESSGVDFDSQNV---AMGEVGMKIDIKDREDASVALD-NVSL---TDNVIE 397
K T E++G +N+ A E MK + + + + L N S+ T+N
Sbjct: 416 KKENKEETHENNGESVKGENLENKAGNEESMKGENLENKVGNEELKGNASVEAKTNNESS 475
Query: 398 REHFRELVDVVSGQNLLQGSHDEMDNKN--GTSFANHETEVTMEELRDGERLREPGDGRL 455
+E RE S + + + +N N G S + + ++E D + + +
Sbjct: 476 KEEKRE-ESQRSNEVYMNKETTKGENVNIQGESIGDSTKDNSLENKEDVKPKVDANESDG 534
Query: 456 LADKISIQES-CTEMIVKDDSSVANHEACEEVMVEKQKNGVQFR-EPGERLITGQNLFLD 513
+ K QE+ + +D ++ N A E+ +K V+ G+ +
Sbjct: 535 NSTKERHQEAQVNNGVSTEDKNLDNIGADEQ---KKNDKSVEVTTNDGDHTKEKREETQG 591
Query: 514 SSKDFSVKENSSDANQEGLDDAKMEEQIHGEADSET 549
++ + SVK N + N+E + K +E + + ++ET
Sbjct: 592 NNGE-SVK-NENLENKEDKKELKDDESVGAKTNNET 625
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.128 0.356 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 572 562 0.0010 119 3 11 23 0.48 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 611 (65 KB)
Total size of DFA: 297 KB (2154 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 60.89u 0.10s 60.99t Elapsed: 00:00:03
Total cpu time: 60.90u 0.10s 61.00t Elapsed: 00:00:03
Start: Mon May 20 15:34:36 2013 End: Mon May 20 15:34:39 2013