BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008253
(572 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3SZ21|RPP30_BOVIN Ribonuclease P protein subunit p30 OS=Bos taurus GN=RPP30 PE=2 SV=1
Length = 268
Score = 95.9 bits (237), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
I AI+RGV FEL YS I D +RR ISNA L+ +GKN+I+SS A E+RGPY
Sbjct: 142 INVAIDRGVGFELLYSPAIKDSTMRRYTISNALNLMQVCKGKNVIISSAAERPLEIRGPY 201
Query: 62 DVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHF 98
DVANL L G+S AKAAVS NCRA L+ RK F
Sbjct: 202 DVANLGLLFGLSESDAKAAVSTNCRAVLLHGETRKTAF 239
>sp|P78346|RPP30_HUMAN Ribonuclease P protein subunit p30 OS=Homo sapiens GN=RPP30 PE=1
SV=1
Length = 268
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
I AI+RG+ FEL YS I D +RR IS+A L+ +GKN+I+SS A E+RGPY
Sbjct: 142 INVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQICKGKNVIISSAAERPLEIRGPY 201
Query: 62 DVANLSSLLGISMERAKAAVSKNCR-ALISNALRKKHF 98
DVANL L G+S AKAAVS NCR AL+ RK F
Sbjct: 202 DVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAF 239
>sp|O88796|RPP30_MOUSE Ribonuclease P protein subunit p30 OS=Mus musculus GN=Rpp30 PE=2
SV=1
Length = 268
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
+ AIERG+ FEL Y I D +RR ISNA L+ +GKN+ILSS A E+RGPY
Sbjct: 142 VNVAIERGLGFELVYGPAIRDATMRRYTISNALNLMQICKGKNVILSSAAERPLEIRGPY 201
Query: 62 DVANLSSLLGISMERAKAAVSKNCRALISNA-LRKKHF 98
DVANL L G+S KAAVS NCRA+ + RK F
Sbjct: 202 DVANLGLLFGLSENDGKAAVSTNCRAVFLHGETRKTAF 239
>sp|Q3ZE13|RPP30_DICDI Ribonuclease P protein subunit drpp30 OS=Dictyostelium discoideum
GN=drpp30 PE=2 SV=1
Length = 366
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 56/95 (58%)
Query: 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
++ I +G++ E+ Y +L R A LV + GKN+ILSS S T LR PY
Sbjct: 146 VRQCIAKGIFIEILYGNLFGIDADRIAFFQIASSLVRSSFGKNIILSSSGKSSTTLRSPY 205
Query: 62 DVANLSSLLGISMERAKAAVSKNCRALISNALRKK 96
D++NL L G++ ++AKAAVSK+ + +A+ ++
Sbjct: 206 DLSNLGHLFGLTFDQAKAAVSKHPHTAVLHAITRR 240
>sp|P87120|RNP3_SCHPO Probable ribonuclease P protein subunit 3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC3A12.04c PE=3
SV=2
Length = 235
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 61/99 (61%)
Query: 5 AIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVA 64
A+ R + E++YS + DV RR +I+NA LV TRG+ +I++S + E R +DV
Sbjct: 133 AVSRDIGIEISYSSGLRDVSNRRNLITNATSLVRATRGRGIIVTSETRTPLECRAGFDVI 192
Query: 65 NLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETI 103
NL++ + ++A+ +V ++CR+++ +A ++ +R +
Sbjct: 193 NLATFWDLKQDQARKSVGESCRSVLLHAETRRDTYRSIL 231
>sp|P38786|RPP1_YEAST Ribonuclease P/MRP protein subunit RPP1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPP1 PE=1 SV=1
Length = 293
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
I + + RGV E+ Y + DVQ RRQ +SN + ++ +R + +++ SGA S E R
Sbjct: 146 ICSCVNRGVKLEIVYGYALRDVQARRQFVSNVRSVIRSSRSRGIVIGSGAMSPLECRNIL 205
Query: 62 DVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETI 103
V +L LG+ +R A+ ++ N + H++TI
Sbjct: 206 GVTSLIKNLGLPSDRCSKAMGDLASLVLLNGRLRNKSHKQTI 247
>sp|Q469M8|RNP3_METBF Ribonuclease P protein component 3 OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rnp3 PE=3 SV=1
Length = 239
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 1 MIKAAIERGVYFELTYSDLILDVQLRR-QMISNAKLLVDWTRGKN--LILSSGASSVTEL 57
+ K+A E V L L+ RR +++SN + +D R + L+LSSGA S +L
Sbjct: 125 LAKSAAENDVAISLIIRPLLHSRGPRRVRLLSNLRANLDLARKYDVSLVLSSGAMSCFDL 184
Query: 58 RGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRV 105
R P + L+ + G+ + A A++ +IS RE I V
Sbjct: 185 RSPMETLALAEVCGLEEDEALEAITVVPERIISRNRPGPGHVREGIEV 232
>sp|O26784|RNP3_METTH Ribonuclease P protein component 3 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rnp3 PE=1 SV=1
Length = 245
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 1 MIKAAIERGVYFELTYSDLILD-VQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTEL 57
+ + A V EL +D+I +++R +++ + ++ R G L+L+S ASS+ +L
Sbjct: 134 LAREAARNNVAVELPLADVIGSWLKVRARVLEQFREILKLHRKFGFPLLLTSRASSIYDL 193
Query: 58 RGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEP 107
R P D+ NL+ G+ A+ +++ +++ ++ + E +R+ P
Sbjct: 194 RTPGDIMNLAECFGMESSEAEESLTSTPASILEDSGNRHLLIAEGVRLLP 243
>sp|Q8PTU3|RNP3_METMA Ribonuclease P protein component 3 OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rnp3 PE=3 SV=1
Length = 239
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 1 MIKAAIERGVYFELTYSDLILDVQLRR-QMISNAKLLVDWTRGKN--LILSSGASSVTEL 57
+ KAA E GV +T L+ RR +M+S+ K ++ R + L+L S A S +L
Sbjct: 125 LAKAAAENGVAIGITLRPLLHSRGSRRIRMLSDLKANLELARKYDVPLVLCSDAMSCYDL 184
Query: 58 RGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRV 105
R P + + + G+ + A A+S + +I + RE I V
Sbjct: 185 RSPMETLAFAEVCGLEEDEALDALSTVPKKIIKKNRPGPGYVREGIEV 232
>sp|Q63118|CALRL_RAT Calcitonin gene-related peptide type 1 receptor OS=Rattus
norvegicus GN=Calcrl PE=2 SV=1
Length = 464
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 101 ETIRVEPISSGEQFDSKEPWSGDWLKWDPISSGEGDLQL-DDMAESFTASTKVSK 154
+ I +PI GE W G WL W+ +++G +Q D + F S KV+K
Sbjct: 50 QKIMQDPIQQGEGLYCNRTWDG-WLCWNDVAAGTESMQYCPDYFQDFDPSEKVTK 103
>sp|Q16602|CALRL_HUMAN Calcitonin gene-related peptide type 1 receptor OS=Homo sapiens
GN=CALCRL PE=1 SV=2
Length = 461
Score = 32.7 bits (73), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 101 ETIRVEPISSGEQFDSKEPWSGDWLKWDPISSGEGDLQL-DDMAESFTASTKVSK 154
+ I +PI E W G WL W+ +++G +QL D + F S KV+K
Sbjct: 50 QKIMQDPIQQAEGVYCNRTWDG-WLCWNDVAAGTESMQLCPDYFQDFDPSEKVTK 103
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,378,491
Number of Sequences: 539616
Number of extensions: 8758317
Number of successful extensions: 22758
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 22540
Number of HSP's gapped (non-prelim): 260
length of query: 572
length of database: 191,569,459
effective HSP length: 123
effective length of query: 449
effective length of database: 125,196,691
effective search space: 56213314259
effective search space used: 56213314259
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)