Query 008253
Match_columns 572
No_of_seqs 118 out of 221
Neff 2.5
Searched_HMMs 46136
Date Thu Mar 28 21:27:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01876 RNase_P_p30: RNase P 99.9 8.5E-24 1.9E-28 187.4 5.9 84 1-84 66-150 (150)
2 KOG2363 Protein subunit of nuc 99.8 3.3E-20 7.1E-25 181.7 8.5 103 2-104 128-230 (247)
3 COG1603 RPP1 RNase P/RNase MRP 99.7 9.8E-17 2.1E-21 156.1 10.6 96 2-97 119-217 (229)
4 PRK00912 ribonuclease P protei 99.6 1.7E-15 3.6E-20 142.6 11.6 104 2-105 124-230 (237)
5 PRK03892 ribonuclease P protei 99.6 3.6E-15 7.8E-20 144.3 9.5 90 2-91 123-215 (216)
6 PRK06361 hypothetical protein; 97.3 0.00093 2E-08 62.0 8.3 81 2-91 128-210 (212)
7 PRK09248 putative hydrolase; V 94.6 0.053 1.1E-06 51.9 5.1 82 2-89 146-229 (246)
8 TIGR00010 hydrolase, TatD fami 93.0 0.63 1.4E-05 43.0 8.8 81 2-89 160-250 (252)
9 cd00530 PTE Phosphotriesterase 90.8 1.4 3.1E-05 42.4 8.8 86 2-88 194-292 (293)
10 cd01310 TatD_DNAse TatD like p 89.8 2.7 5.9E-05 38.7 9.4 81 2-89 160-250 (251)
11 PRK09875 putative hydrolase; P 89.7 3 6.5E-05 42.6 10.4 85 2-89 196-291 (292)
12 PRK08392 hypothetical protein; 88.8 1.3 2.9E-05 42.0 6.8 66 2-76 143-208 (215)
13 PRK07945 hypothetical protein; 87.8 1.4 3E-05 45.3 6.6 70 1-79 250-321 (335)
14 PRK07328 histidinol-phosphatas 87.2 0.54 1.2E-05 46.0 3.2 67 2-72 183-252 (269)
15 PRK07329 hypothetical protein; 85.2 1.2 2.7E-05 43.3 4.5 69 1-74 170-242 (246)
16 PRK05588 histidinol-phosphatas 79.8 3 6.4E-05 40.4 4.8 67 2-73 172-242 (255)
17 PRK08609 hypothetical protein; 78.7 4.1 8.8E-05 44.9 6.0 70 2-80 485-556 (570)
18 PRK10812 putative DNAse; Provi 74.1 21 0.00045 35.7 9.0 82 2-90 164-255 (265)
19 COG1387 HIS2 Histidinol phosph 71.9 7.1 0.00015 38.4 5.1 77 2-87 153-231 (237)
20 PRK06740 histidinol-phosphatas 71.5 2.9 6.2E-05 43.1 2.5 68 2-72 245-315 (331)
21 PF13147 Amidohydro_4: Amidohy 70.8 25 0.00054 31.7 8.0 50 42-91 236-288 (304)
22 cd01295 AdeC Adenine deaminase 70.5 28 0.00061 36.3 9.4 77 3-89 170-252 (422)
23 PRK10657 isoaspartyl dipeptida 67.8 28 0.00062 35.0 8.5 87 3-90 237-341 (388)
24 PRK08123 histidinol-phosphatas 66.9 5.9 0.00013 39.0 3.5 55 1-58 202-258 (270)
25 TIGR01856 hisJ_fam histidinol 65.3 6.6 0.00014 38.3 3.4 52 2-58 191-245 (253)
26 PTZ00124 adenosine deaminase; 58.1 24 0.00052 37.2 6.2 80 2-83 263-342 (362)
27 COG3964 Predicted amidohydrola 56.3 24 0.00052 38.1 5.8 83 2-94 234-322 (386)
28 cd01292 metallo-dependent_hydr 53.5 22 0.00048 31.9 4.4 82 2-86 189-273 (275)
29 TIGR01178 ade adenine deaminas 52.2 72 0.0016 35.5 8.9 81 3-90 211-294 (552)
30 cd00443 ADA_AMPD Adenosine/AMP 50.5 48 0.001 33.4 6.7 80 2-83 207-286 (305)
31 cd01320 ADA Adenosine deaminas 49.7 39 0.00085 33.5 5.9 90 2-95 227-318 (325)
32 PF02126 PTE: Phosphotriestera 47.8 42 0.00092 34.7 6.0 87 2-89 200-307 (308)
33 cd01309 Met_dep_hydrolase_C Me 47.1 98 0.0021 31.7 8.4 83 4-90 233-318 (359)
34 PF01026 TatD_DNase: TatD rela 46.8 1.3E+02 0.0027 29.4 8.7 82 1-89 163-254 (255)
35 cd01301 rDP_like renal dipepti 43.0 1.4E+02 0.0029 31.0 8.7 86 1-86 212-307 (309)
36 COG1228 HutI Imidazolonepropio 42.5 49 0.0011 35.4 5.6 54 42-95 306-359 (406)
37 cd01308 Isoaspartyl-dipeptidas 40.5 2.1E+02 0.0046 29.0 9.5 85 4-90 236-340 (387)
38 cd01306 PhnM PhnM is believed 38.0 95 0.0021 32.4 6.8 82 2-90 210-291 (325)
39 PRK11449 putative deoxyribonuc 35.1 1.9E+02 0.0042 28.8 8.1 81 2-89 166-256 (258)
40 cd01307 Met_dep_hydrolase_B Me 34.4 2.6E+02 0.0057 28.1 9.0 80 2-90 211-295 (338)
41 cd01321 ADGF Adenosine deamina 34.2 1.2E+02 0.0026 31.7 6.8 80 2-84 239-323 (345)
42 PRK12394 putative metallo-depe 34.0 2.4E+02 0.0053 29.0 8.9 80 2-90 235-319 (379)
43 TIGR01975 isoAsp_dipep isoaspa 34.0 2E+02 0.0043 30.6 8.4 88 4-91 238-343 (389)
44 cd01298 ATZ_TRZ_like TRZ/ATZ f 33.8 1.9E+02 0.004 29.0 7.8 83 2-90 259-350 (411)
45 TIGR01430 aden_deam adenosine 31.0 1.1E+02 0.0024 30.7 5.7 91 2-95 226-317 (324)
46 PRK09358 adenosine deaminase; 31.0 1.5E+02 0.0032 29.9 6.7 76 2-80 236-312 (340)
47 PF12244 DUF3606: Protein of u 30.7 71 0.0015 25.8 3.6 34 52-85 12-45 (57)
48 cd01299 Met_dep_hydrolase_A Me 28.3 4E+02 0.0088 26.3 9.0 86 2-89 208-311 (342)
49 PF03102 NeuB: NeuB family; I 26.2 23 0.0005 35.6 0.1 33 32-64 102-135 (241)
50 TIGR01224 hutI imidazoloneprop 25.2 2.3E+02 0.0051 28.5 6.9 82 2-89 248-331 (377)
51 PRK09237 dihydroorotase; Provi 23.2 5.5E+02 0.012 26.3 9.1 80 2-90 230-314 (380)
52 PF01244 Peptidase_M19: Membra 21.2 4.4E+02 0.0095 27.4 8.1 90 1-90 218-319 (320)
53 PF00627 UBA: UBA/TS-N domain; 20.9 1.6E+02 0.0034 21.2 3.6 24 60-84 3-26 (37)
No 1
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=99.89 E-value=8.5e-24 Score=187.37 Aligned_cols=84 Identities=56% Similarity=0.770 Sum_probs=69.4
Q ss_pred CHHHHHHcCcEEEEEecccc-CChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHHH
Q 008253 1 MIKAAIERGVYFELTYSDLI-LDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKA 79 (572)
Q Consensus 1 MVRaAIERGI~FEI~YSPaI-rDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAKa 79 (572)
++++|++|||+|||+|+|+| +++..|+++|+|++.|+++++++||||||||+++++||+|+||+||+.+|||++++|++
T Consensus 66 ~~~~a~~~gi~~EI~~~~~l~~~~~~r~~~~~~~~~l~~~~~~~~iiiSSgA~~~~elr~P~dv~~l~~~lGl~~~~a~~ 145 (150)
T PF01876_consen 66 QARLAIERGIFFEISYSPLLRSDGSNRRNFISNARRLIRLTKKKNIIISSGASSPLELRSPRDVINLLALLGLSEEEAKK 145 (150)
T ss_dssp HHHHHHHHT-EEEEESHHHHHS-HHHHHHHHHHHHHHHHHHHH--EEEE---SSGGG---HHHHHHHHHHTT--HHHHHH
T ss_pred HHHHHHHCCEEEEEEehHhhccCcHHHHHHHHHHHHHHHHhCCCCEEEEcCCCChhhCcCHHHHHHHHHHhCCCHHHHHH
Confidence 47899999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 008253 80 AVSKN 84 (572)
Q Consensus 80 ALSkN 84 (572)
|+++|
T Consensus 146 avs~n 150 (150)
T PF01876_consen 146 AVSTN 150 (150)
T ss_dssp TTTH-
T ss_pred HHhcC
Confidence 99986
No 2
>KOG2363 consensus Protein subunit of nuclear ribonuclease P (RNase P) [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=3.3e-20 Score=181.72 Aligned_cols=103 Identities=46% Similarity=0.671 Sum_probs=96.7
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHHHHH
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAV 81 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAKaAL 81 (572)
+..|+.||++|||.|++.++|+..|++||+||+.|++.++|||||+||||..++++|+|+||+||+..|||+++||+++|
T Consensus 128 ~~~av~r~i~~ei~y~~g~~d~~~r~~~isna~~L~~~~~~~nvv~sSgA~~~~e~r~~~dV~~l~~~lgl~~dq~k~~l 207 (247)
T KOG2363|consen 128 IMTAVKRGIFLEIPYSSGLYDSDDRRMWISNARRLLRITRGKNVVFSSGAMRPTEERGPYDVANLLIILGLSSDQAKAAL 207 (247)
T ss_pred eeeeecCCceeEeeecccccCCcchhhhhhhHHHHHHhcCCceeEeecccccchhhcChhhhhhhHHHcCCchHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHhhhhcccccceeEE
Q 008253 82 SKNCRALISNALRKKHFHRETIR 104 (572)
Q Consensus 82 SkNPRsLLl~AlRRRstyK~VI~ 104 (572)
+.+||+++.++.+|++.++..+.
T Consensus 208 ~~s~r~~~l~a~~R~~~~~s~~~ 230 (247)
T KOG2363|consen 208 SESCRLLLLCAETRRSKAASISE 230 (247)
T ss_pred hhhhhhhhhHHHHhhccceeEee
Confidence 99999999999999874444443
No 3
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=9.8e-17 Score=156.09 Aligned_cols=96 Identities=30% Similarity=0.464 Sum_probs=90.3
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHH-HHHHHHHHHHHHhC--CCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHH
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRR-QMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMERAK 78 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRR-n~ISNArqLIRaTR--GKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAK 78 (572)
++.|.+|||++||.|++++++...|| +++++++.+++++| +.++||||+|+++++||+|+|+++|+.+|||+.++|+
T Consensus 119 a~laa~~~valeisl~~ll~~~g~~Ra~~l~~lr~~lrl~rk~~v~ivvtS~A~s~~elrsP~dv~sl~~~lG~e~~ea~ 198 (229)
T COG1603 119 ARLAAEKGVALEISLRPLLRSSGYRRARLLSFLRSLLRLARKYDVPIVVTSDAESPLELRSPRDVISLAKVLGLEDDEAK 198 (229)
T ss_pred HHHHHhcCceEEEehHHhhccchhHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCChhhhcChhhHHHHHHHhCCCHHHHH
Confidence 68999999999999999999876666 99999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHhhhhccc
Q 008253 79 AAVSKNCRALISNALRKKH 97 (572)
Q Consensus 79 aALSkNPRsLLl~AlRRRs 97 (572)
.+++..|+.++.++.+.+.
T Consensus 199 ~~~~~~p~~iL~~~~~~~~ 217 (229)
T COG1603 199 KSLSEYPRLILRNRNRIRD 217 (229)
T ss_pred HHHHHhHHHHHHHhhhcCC
Confidence 9999999999998666644
No 4
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=99.63 E-value=1.7e-15 Score=142.57 Aligned_cols=104 Identities=26% Similarity=0.369 Sum_probs=95.3
Q ss_pred HHHHHHcCcEEEEEeccccCCh-hHHHHHHHHHHHHHHHhC--CCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHH
Q 008253 2 IKAAIERGVYFELTYSDLILDV-QLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMERAK 78 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs-~aRRn~ISNArqLIRaTR--GKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAK 78 (572)
+++|+++|++|||+|++++++. ..|+++++|++.++++++ |.+|||||+|.++.+||+|+++++|+..+||+.++++
T Consensus 124 ~~~a~~~gv~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~~~~l~~~~~~~~l~~~~Gl~~~~~~ 203 (237)
T PRK00912 124 AKEAARNNVAIEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMSCYDLRSPREMIALAELFGMEEDEAL 203 (237)
T ss_pred HHHHHHCCeEEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcccccCCHHHHHHHHHHcCCCHHHHH
Confidence 6899999999999999999864 468899999999999998 6789999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHhhhhcccccceeEEe
Q 008253 79 AAVSKNCRALISNALRKKHFHRETIRV 105 (572)
Q Consensus 79 aALSkNPRsLLl~AlRRRstyK~VI~V 105 (572)
.+++.+|+.|+.+..+|+.+....+.+
T Consensus 204 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ 230 (237)
T PRK00912 204 KALSYYPESIIKKNRNRKNYVIEGVEI 230 (237)
T ss_pred HHHHHhHHHHHHhhccCCCcccccEEE
Confidence 999999999999998877666666655
No 5
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=99.59 E-value=3.6e-15 Score=144.29 Aligned_cols=90 Identities=24% Similarity=0.299 Sum_probs=86.1
Q ss_pred HHHHHHcCcEEEEEeccccCC-hhHHHHHHHHHHHHHHHhC--CCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHH
Q 008253 2 IKAAIERGVYFELTYSDLILD-VQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMERAK 78 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrD-s~aRRn~ISNArqLIRaTR--GKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAK 78 (572)
.|.|.+|||++||+++|+|+. +..|.++|+..+.++.+.| +.++||||+|.+.++||+|+|++.|+.+|||+.++|+
T Consensus 123 AKlAa~n~VAIe~~L~plL~~~G~~Rar~L~~~r~~l~L~rKYd~P~VISS~A~s~~~lRsPRdl~aL~~~iGme~~ea~ 202 (216)
T PRK03892 123 ARMAAKRGVAIGFSLSPLLRANPYERANILRFMMKAWQLVNKYKVPRFITSSAESKWEVRGPRDLMSLGINIGMEIPQAK 202 (216)
T ss_pred HHHHHHcCeEEEEecHHHHhhCchhHHHHHHHHHHHHHHHHHcCCCEEEecCcchhccCCCHHHHHHHHHHhCCCHHHHH
Confidence 589999999999999999965 7899999999999999998 8999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHh
Q 008253 79 AAVSKNCRALISN 91 (572)
Q Consensus 79 aALSkNPRsLLl~ 91 (572)
++|+..|+.++.+
T Consensus 203 ~~Ls~~p~~i~~~ 215 (216)
T PRK03892 203 ASLSFYPRIILKR 215 (216)
T ss_pred HHHHHhHHHHhhc
Confidence 9999999998764
No 6
>PRK06361 hypothetical protein; Provisional
Probab=97.32 E-value=0.00093 Score=62.00 Aligned_cols=81 Identities=17% Similarity=0.219 Sum_probs=65.5
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhC--CCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHHH
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKA 79 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTR--GKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAKa 79 (572)
+++|.++|+++||++++.... ..+. ++++.+ |-+++++|.|.++-++.....+..++.-.|++.++...
T Consensus 128 ~~~~~~~~~~lEin~~~~~~~--~~~~-------~l~~a~~~gi~vv~~SDaH~~~d~~~~~~~~~i~~~~gl~~~~v~~ 198 (212)
T PRK06361 128 AELAAENGVFLEITARKGHSL--TNGH-------VARIAREAGAPLVINTDTHAPSDLITYEFARKVALGAGLTEKELEE 198 (212)
T ss_pred HHHHHHcCeEEEEECCCCccc--chHH-------HHHHHHHhCCcEEEECCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 688999999999998543211 1122 333332 77899999999999999988899999999999999999
Q ss_pred HHHHhHHHHHHh
Q 008253 80 AVSKNCRALISN 91 (572)
Q Consensus 80 ALSkNPRsLLl~ 91 (572)
++..||+.+|.+
T Consensus 199 ~~~~~~~~~~~~ 210 (212)
T PRK06361 199 ALENNPKLLLKR 210 (212)
T ss_pred HHHHhHHHHHHh
Confidence 999999988754
No 7
>PRK09248 putative hydrolase; Validated
Probab=94.63 E-value=0.053 Score=51.94 Aligned_cols=82 Identities=21% Similarity=0.226 Sum_probs=58.9
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhC--CCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHHH
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKA 79 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTR--GKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAKa 79 (572)
++.++++|+.+||+.+++......+ ....+.++++.+ |..++++|.|.++.++.....++.++.-+|++..+
T Consensus 146 ~~~~~~~g~~lEvN~~~l~~~~~g~---~~~~~~~~~~~~~~g~~~~~gSDAH~~~~vg~~~~~~~~~~~~g~~~~~--- 219 (246)
T PRK09248 146 VKAAKEHNVALEINNSSFGHSRKGS---EDNCRAIAALCKKAGVWVALGSDAHIAFDIGNFEEALKILDEVGFPEER--- 219 (246)
T ss_pred HHHHHHhCCEEEEECCCCccCCCCC---cChHHHHHHHHHHcCCeEEEeCCCCChhhhccHHHHHHHHHHcCCCHHH---
Confidence 5778899999999999874311000 111233333332 77899999999999999999999999999999996
Q ss_pred HHHHhHHHHH
Q 008253 80 AVSKNCRALI 89 (572)
Q Consensus 80 ALSkNPRsLL 89 (572)
.++..++.|+
T Consensus 220 ~~~~~~~~~~ 229 (246)
T PRK09248 220 ILNVSPRRLL 229 (246)
T ss_pred eeeCCHHHHH
Confidence 4444455555
No 8
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=93.03 E-value=0.63 Score=42.98 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=56.4
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCC--CCc----CHHHHHH----HHHHhC
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVT--ELR----GPYDVAN----LSSLLG 71 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~l--ELR----SPyDVIN----LasLFG 71 (572)
++.++++|++|.++......+. ...+.+++......|+++|.+.... ..| .|..+.. ++.+.|
T Consensus 160 ~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~i~~~~~dril~~TD~p~~~~~~~~~~~~~p~~i~~~~~~~a~~~g 232 (252)
T TIGR00010 160 AKKLLDLGFYISISGIVTFKNA-------KSLREVVRKIPLERLLVETDSPYLAPVPYRGKRNEPAFVRYTVEAIAEIKG 232 (252)
T ss_pred HHHHHHCCCeEeeceeEecCCc-------HHHHHHHHhCCHHHeEecccCCCCCCCCCCCCCCCChhHHHHHHHHHHHhC
Confidence 5677889999999975443322 2344555555567899999985421 223 4445443 466889
Q ss_pred CCHHHHHHHHHHhHHHHH
Q 008253 72 ISMERAKAAVSKNCRALI 89 (572)
Q Consensus 72 LSeDeAKaALSkNPRsLL 89 (572)
++.+++.+.++.||+.++
T Consensus 233 ~~~~~~~~~~~~N~~~~~ 250 (252)
T TIGR00010 233 MDVEELAQITTKNAKRLF 250 (252)
T ss_pred cCHHHHHHHHHHHHHHHh
Confidence 999999999999998775
No 9
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=90.78 E-value=1.4 Score=42.39 Aligned_cols=86 Identities=16% Similarity=0.073 Sum_probs=61.0
Q ss_pred HHHHHHcCcEEEEEeccccC---ChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCC--Cc---C-----HHHHHHHHH
Q 008253 2 IKAAIERGVYFELTYSDLIL---DVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTE--LR---G-----PYDVANLSS 68 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIr---Ds~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lE--LR---S-----PyDVINLas 68 (572)
++.++++|++|.|+...... ..... .-...++.+++....-.|+|+|.+..... .| . ++-+..++.
T Consensus 194 ~~~~~~~G~~i~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~d~ill~TD~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (293)
T cd00530 194 LLKIAALGAYLEFDGIGKDKIFGYPSDE-TRADAVKALIDEGYGDRLLLSHDVFRKSYLEKRYGGHGYDYILTRFIPRLR 272 (293)
T ss_pred HHHHHhCCCEEEeCCCCcccccCCCCHH-HHHHHHHHHHHCCCcCCEEEeCCcCchhhhhhccCCCChHHHHHHHHHHHH
Confidence 56789999999999766442 11111 12335667777666779999999876322 23 2 555667788
Q ss_pred HhCCCHHHHHHHHHHhHHHH
Q 008253 69 LLGISMERAKAAVSKNCRAL 88 (572)
Q Consensus 69 LFGLSeDeAKaALSkNPRsL 88 (572)
+.|++.++..+.++.||+.+
T Consensus 273 ~~g~~~e~i~~~~~~N~~~l 292 (293)
T cd00530 273 ERGVTEEQLDTILVENPARF 292 (293)
T ss_pred HcCCCHHHHHHHHHHCHHHh
Confidence 99999999999999999765
No 10
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=89.80 E-value=2.7 Score=38.72 Aligned_cols=81 Identities=17% Similarity=0.285 Sum_probs=52.7
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCc------CHH----HHHHHHHHhC
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELR------GPY----DVANLSSLLG 71 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELR------SPy----DVINLasLFG 71 (572)
++.++++|++|.+.-....... . ..+.+++......|+++|.+......+ .|. -+..|+...|
T Consensus 160 ~~~~~~~g~~~~~~~~~~~~~~----~---~~~~~~~~~~~dril~~TD~p~~~~~~~~~~~~~~~~~~~~~~~la~~~g 232 (251)
T cd01310 160 AKELLDLGFYISISGIVTFKNA----N---ELREVVKEIPLERLLLETDSPYLAPVPFRGKRNEPAYVKHVAEKIAELKG 232 (251)
T ss_pred HHHHHHcCCEEEeeeeeccCCC----H---HHHHHHHhCChHHEEEcccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHC
Confidence 4667889999988854322111 1 234455555556899999875432221 222 3444556799
Q ss_pred CCHHHHHHHHHHhHHHHH
Q 008253 72 ISMERAKAAVSKNCRALI 89 (572)
Q Consensus 72 LSeDeAKaALSkNPRsLL 89 (572)
|+.++..+.+..||+.++
T Consensus 233 l~~e~~~~~~~~N~~~ll 250 (251)
T cd01310 233 ISVEEVAEVTTENAKRLF 250 (251)
T ss_pred cCHHHHHHHHHHHHHHHh
Confidence 999999999999998765
No 11
>PRK09875 putative hydrolase; Provisional
Probab=89.66 E-value=3 Score=42.56 Aligned_cols=85 Identities=16% Similarity=0.144 Sum_probs=62.3
Q ss_pred HHHHHHcCcEEEEEe-cccc-CChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCcC---------HHHHHHHHHHh
Q 008253 2 IKAAIERGVYFELTY-SDLI-LDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRG---------PYDVANLSSLL 70 (572)
Q Consensus 2 VRaAIERGI~FEI~Y-SPaI-rDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELRS---------PyDVINLasLF 70 (572)
++..+++|+++|++- +.-. .....| +...+.|++..-...|+||+.......++. ...++-.+.--
T Consensus 196 ~~~l~~~G~~l~fD~~g~~~~~pd~~r---~~~i~~L~~~Gy~drilLS~D~~~~~~~~~~gg~G~~~i~~~~ip~L~~~ 272 (292)
T PRK09875 196 ILKMIDLGAYVQFDTIGKNSYYPDEKR---IAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGYDYLLTTFIPQLRQS 272 (292)
T ss_pred HHHHHHcCCEEEeccCCCcccCCHHHH---HHHHHHHHhcCCCCeEEEeCCCCCcccccccCCCChhHHHHHHHHHHHHc
Confidence 456789999999962 2111 112333 667777888888899999998876666555 45566666777
Q ss_pred CCCHHHHHHHHHHhHHHHH
Q 008253 71 GISMERAKAAVSKNCRALI 89 (572)
Q Consensus 71 GLSeDeAKaALSkNPRsLL 89 (572)
|+++++.++.+..||+.++
T Consensus 273 Gvse~~I~~m~~~NP~r~~ 291 (292)
T PRK09875 273 GFSQADVDVMLRENPSQFF 291 (292)
T ss_pred CCCHHHHHHHHHHCHHHHh
Confidence 9999999999999998764
No 12
>PRK08392 hypothetical protein; Provisional
Probab=88.82 E-value=1.3 Score=42.02 Aligned_cols=66 Identities=18% Similarity=0.099 Sum_probs=47.1
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHH
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMER 76 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELRSPyDVINLasLFGLSeDe 76 (572)
+++|+++|+.+||+-.. ....+ .++..++++ |.+|+|+|.|..+.++=.-.....++.=+|++.++
T Consensus 143 ~~~~~~~g~~lEiNt~~---~~p~~-~~l~~~~~~-----G~~~~igSDAH~~~~vg~~~~a~~~~~~~g~~~~~ 208 (215)
T PRK08392 143 LDLAEAYGKAFEISSRY---RVPDL-EFIRECIKR-----GIKLTFASDAHRPEDVGNVSWSLKVFKKAGGKKED 208 (215)
T ss_pred HHHHHHhCCEEEEeCCC---CCCCH-HHHHHHHHc-----CCEEEEeCCCCChHHCCcHHHHHHHHHHcCCCHHH
Confidence 67899999999999632 11111 233333322 78899999999998886666677788888988775
No 13
>PRK07945 hypothetical protein; Provisional
Probab=87.80 E-value=1.4 Score=45.34 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=53.6
Q ss_pred CHHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhC--CCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHH
Q 008253 1 MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMERAK 78 (572)
Q Consensus 1 MVRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTR--GKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAK 78 (572)
++++|+++|+.+||+-++.-.. ....+++..+ |.+|+|+|.|..+-++-.-.....++.=.|+++++.-
T Consensus 250 i~~a~~e~g~~lEINt~~~r~~---------P~~~il~~a~e~G~~vtigSDAH~p~~v~~~~~~~~~a~~~g~~~~~i~ 320 (335)
T PRK07945 250 VFAACREHGTAVEINSRPERRD---------PPTRLLRLALDAGCLFSIDTDAHAPGQLDWLGYGCERAEEAGVPADRIV 320 (335)
T ss_pred HHHHHHHhCCEEEEeCCCCCCC---------ChHHHHHHHHHcCCeEEecCCCCChhhcchHHHHHHHHHHcCCCHHHcc
Confidence 3688999999999998765332 2233444443 7789999999999999877778999999999887643
Q ss_pred H
Q 008253 79 A 79 (572)
Q Consensus 79 a 79 (572)
.
T Consensus 321 n 321 (335)
T PRK07945 321 N 321 (335)
T ss_pred c
Confidence 3
No 14
>PRK07328 histidinol-phosphatase; Provisional
Probab=87.16 E-value=0.54 Score=45.96 Aligned_cols=67 Identities=22% Similarity=0.241 Sum_probs=41.6
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhC--CCcEEEccCCCCCCCCc-CHHHHHHHHHHhCC
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELR-GPYDVANLSSLLGI 72 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTR--GKNIIISSGA~S~lELR-SPyDVINLasLFGL 72 (572)
+++|+++|+.+||+-+.+-+.... ......+++..+ |.+|+|+|.|..+-++- .-.....|+.-+|+
T Consensus 183 l~~~~~~g~~lEiNt~~~r~~~~~----~yp~~~il~~~~~~g~~itigSDAH~~~~vg~~~~~a~~~l~~~G~ 252 (269)
T PRK07328 183 LDVIAAAGLALEVNTAGLRKPVGE----IYPSPALLRACRERGIPVVLGSDAHRPEEVGFGFAEALALLKEVGY 252 (269)
T ss_pred HHHHHHcCCEEEEEchhhcCCCCC----CCCCHHHHHHHHHcCCCEEEeCCCCCHHHHhccHHHHHHHHHHcCC
Confidence 688999999999999765432110 111223444443 66799999999877764 23334444444554
No 15
>PRK07329 hypothetical protein; Provisional
Probab=85.20 E-value=1.2 Score=43.25 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=47.1
Q ss_pred CHHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhC--C-CcEEEccCCCCCCCC-cCHHHHHHHHHHhCCCH
Q 008253 1 MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTR--G-KNLILSSGASSVTEL-RGPYDVANLSSLLGISM 74 (572)
Q Consensus 1 MVRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTR--G-KNIIISSGA~S~lEL-RSPyDVINLasLFGLSe 74 (572)
++++|+++|+.+||+-+.+.+..... . ...+++..+ | ..|+|+|-|-++-++ +.-.....++.-+|++.
T Consensus 170 i~~~~~~~~~~lEiNt~~~~~~~~~~-~----~~~~l~~~~~~g~~~i~~gSDAH~~~~vg~~~~~a~~~l~~~g~~~ 242 (246)
T PRK07329 170 IFAKMIDNDLAFELNTKSMYLYGNEG-L----YRYAIELYKQLGGKLFSIGSDAHKLEHYRYNFDDAQKLLKEHGIKE 242 (246)
T ss_pred HHHHHHHcCCeEEEECcccccCCCCc-c----hHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHHHHHcCCce
Confidence 36889999999999998875432111 1 123344443 3 458999999999887 55566677777777753
No 16
>PRK05588 histidinol-phosphatase; Provisional
Probab=79.76 E-value=3 Score=40.39 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=44.8
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhC--C-CcEEEccCCCCCCCCc-CHHHHHHHHHHhCCC
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTR--G-KNLILSSGASSVTELR-GPYDVANLSSLLGIS 73 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTR--G-KNIIISSGA~S~lELR-SPyDVINLasLFGLS 73 (572)
+++++++|+.+||+-+.+-+... ..+...+++..+ | ..|+|+|.|.++.++. .-..+..++.-+|++
T Consensus 172 l~~~~~~g~~lEINt~~l~~~~~-----~~~~~~~l~~~~~~g~~~i~lgSDAH~~~~vg~~~~~~~~~l~~~G~~ 242 (255)
T PRK05588 172 LKVLIEKEKVLEINTRRLDDKRS-----VENLVKIYKRFYELGGKYITLGSDAHNIEDIGNNFKFALEIAEYCNLK 242 (255)
T ss_pred HHHHHHcCCEEEEECcccCCCCC-----CCCHHHHHHHHHHcCCcEEEEECCCCCHHHHHhhHHHHHHHHHHcCCE
Confidence 68899999999999865433210 112233333332 4 4489999999998884 567777777777765
No 17
>PRK08609 hypothetical protein; Provisional
Probab=78.69 E-value=4.1 Score=44.94 Aligned_cols=70 Identities=19% Similarity=0.101 Sum_probs=56.1
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhC--CCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHHH
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKA 79 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTR--GKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAKa 79 (572)
++.|+++|+.+||+-++.-.+. ...+++..+ |-.++|+|.|.++.++....-.++++.=.|++.++.-.
T Consensus 485 ~~~a~~~G~~lEINa~~~r~~~---------~~~~~~~~~e~Gv~i~igSDAH~~~~l~~~~~~v~~ar~~~~~~~~v~N 555 (570)
T PRK08609 485 IELAKETNTALELNANPNRLDL---------SAEHLKKAQEAGVKLAINTDAHHTEMLDDMKYGVATARKGWIQKDRVIN 555 (570)
T ss_pred HHHHHHhCCEEEEcCCccccCc---------cHHHHHHHHHcCCEEEEECCCCChhhhCcHHHHHHHHHHcCCCHHHccc
Confidence 5678999999999988763331 344444443 77899999999999999999999999999999987644
Q ss_pred H
Q 008253 80 A 80 (572)
Q Consensus 80 A 80 (572)
+
T Consensus 556 ~ 556 (570)
T PRK08609 556 T 556 (570)
T ss_pred C
Confidence 4
No 18
>PRK10812 putative DNAse; Provisional
Probab=74.05 E-value=21 Score=35.65 Aligned_cols=82 Identities=16% Similarity=0.258 Sum_probs=58.5
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCC--CCCCcC----HHHHHH----HHHHhC
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASS--VTELRG----PYDVAN----LSSLLG 71 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S--~lELRS----PyDVIN----LasLFG 71 (572)
++.++++|.+|-|.- .+... |. .+.+.+++...--.|++.|-+.. +.-.|+ |..|.. |+.+.|
T Consensus 164 a~~~~~~G~~is~~g--~~t~~--~~---~~~~~~~~~ipldrlLlETD~P~~~p~~~~g~~n~P~~i~~v~~~ia~l~g 236 (265)
T PRK10812 164 AGKLLDLGFYISFSG--IVTFR--NA---EQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKG 236 (265)
T ss_pred HHHHHHCCCEEEECe--eeecC--cc---HHHHHHHHhCChhhEEEecCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHhC
Confidence 578899999999972 22111 11 24567777777788999999864 223444 666654 456889
Q ss_pred CCHHHHHHHHHHhHHHHHH
Q 008253 72 ISMERAKAAVSKNCRALIS 90 (572)
Q Consensus 72 LSeDeAKaALSkNPRsLLl 90 (572)
++.++..+.+..|++.++.
T Consensus 237 ~~~eei~~~~~~N~~~lf~ 255 (265)
T PRK10812 237 VSVEELAQVTTDNFARLFH 255 (265)
T ss_pred CCHHHHHHHHHHHHHHHHC
Confidence 9999999999999988873
No 19
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=71.88 E-value=7.1 Score=38.36 Aligned_cols=77 Identities=19% Similarity=0.210 Sum_probs=59.9
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhC--CCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHHH
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKA 79 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTR--GKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAKa 79 (572)
+..|.++|++|||+=++--.+. ...++++.| |..+.|.|-|-.+-++-..+.-+-++.--|+..+....
T Consensus 153 ~~~~~~~g~aleins~~~~~~~---------~~~~~~~~~e~G~~~~i~tDaH~~~~lg~~~~~~~~~~~a~~~~~~i~~ 223 (237)
T COG1387 153 IELAEKNGKALEINSRPGRLDP---------NSEILRLARELGVKLAIGTDAHRPGDLGDMYFGVKIARRAGLTKERIIN 223 (237)
T ss_pred HHHHHHhCcEEeecCCcCccCc---------hHHHHHHHHHhCCeEEeecCcCChhhcccchHHHHHHHHhcCCccceEe
Confidence 6789999999999987544443 244555555 89999999999999999999999999888888877655
Q ss_pred HHHHhHHH
Q 008253 80 AVSKNCRA 87 (572)
Q Consensus 80 ALSkNPRs 87 (572)
.....+..
T Consensus 224 ~~~~~~~~ 231 (237)
T COG1387 224 TSDAEGLK 231 (237)
T ss_pred ccchhHHH
Confidence 55554433
No 20
>PRK06740 histidinol-phosphatase; Validated
Probab=71.53 E-value=2.9 Score=43.06 Aligned_cols=68 Identities=16% Similarity=0.081 Sum_probs=40.9
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhC--CCcEEEccCCCCCCCCcCHH-HHHHHHHHhCC
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRGPY-DVANLSSLLGI 72 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTR--GKNIIISSGA~S~lELRSPy-DVINLasLFGL 72 (572)
+++|+++|+.+||+-+..++.+. + -+.-...+++..+ |.+|+|+|.|..+-++-.-+ ....++.-+|+
T Consensus 245 ~~a~~~~g~~lEINt~~~~r~~~--~-e~yP~~~il~~~~e~Gv~~tlgSDAH~p~~VG~~~~~a~~~l~~~G~ 315 (331)
T PRK06740 245 ARALVETNTATEINAGLYYRYPV--R-EMCPSPLFLQVLAKHEVPITLSSDAHYPNDLGKYVEENVKTLRNHGV 315 (331)
T ss_pred HHHHHHcCCEEEEECccccCCCC--C-CCCcCHHHHHHHHHCCCeEEEeeCCCCHHHHHhHHHHHHHHHHHcCC
Confidence 68899999999999975443221 0 0111122333332 78899999999876664432 33444444454
No 21
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=70.85 E-value=25 Score=31.74 Aligned_cols=50 Identities=20% Similarity=0.132 Sum_probs=42.3
Q ss_pred CCcEEEccCCCCC---CCCcCHHHHHHHHHHhCCCHHHHHHHHHHhHHHHHHh
Q 008253 42 GKNLILSSGASSV---TELRGPYDVANLSSLLGISMERAKAAVSKNCRALISN 91 (572)
Q Consensus 42 GKNIIISSGA~S~---lELRSPyDVINLasLFGLSeDeAKaALSkNPRsLLl~ 91 (572)
|..+.|+|.+... ........+..++..+||+..+|-+++|.||..++--
T Consensus 236 Gv~~~l~sD~~~~~~~~~~~~~~~~~~~~~~~gl~~~~al~~~T~~pA~~lgl 288 (304)
T PF13147_consen 236 GVPVALGSDHAPSSTEGSGDLLHEAMRLAVRAGLSPEEALRAATSNPARILGL 288 (304)
T ss_dssp TSSEEEEE-BBTTTTTCTTTHHHHHHHHHHHTSSTHHHHHHHHTHHHHHHTTB
T ss_pred CCeEEEEcCCcccccccccccchhhhhHHhhcCCCHHHHHHHHHHHHHHHhCC
Confidence 6899999988765 6677788888888899999999999999999877653
No 22
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=70.50 E-value=28 Score=36.33 Aligned_cols=77 Identities=14% Similarity=0.105 Sum_probs=53.0
Q ss_pred HHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHh---CCCcEEEccCCCCCCCCc---CHHHHHHHHHHhCCCHHH
Q 008253 3 KAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWT---RGKNLILSSGASSVTELR---GPYDVANLSSLLGISMER 76 (572)
Q Consensus 3 RaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaT---RGKNIIISSGA~S~lELR---SPyDVINLasLFGLSeDe 76 (572)
..++++|+++-|..+..- .+.+.+++.. .+.+++++|-+..+..+. ....++.++...||+..+
T Consensus 170 ~e~l~~G~~i~i~~g~~~----------~~~~~~~~~l~~~~~~~i~l~TD~~~~~~~~~~g~~~~v~r~a~~~g~s~~e 239 (422)
T cd01295 170 LEKLRLGMYVMLREGSIA----------KNLEALLPAITEKNFRRFMFCTDDVHPDDLLSEGHLDYIVRRAIEAGIPPED 239 (422)
T ss_pred HHHHHCCCEEEEECcccH----------hhHHHHHHhhhhccCCeEEEEcCCCCchhhhhcchHHHHHHHHHHcCCCHHH
Confidence 456789999988766541 1122222222 368899999987554442 334566777778999999
Q ss_pred HHHHHHHhHHHHH
Q 008253 77 AKAAVSKNCRALI 89 (572)
Q Consensus 77 AKaALSkNPRsLL 89 (572)
|.++.+.||..++
T Consensus 240 al~~aT~n~A~~~ 252 (422)
T cd01295 240 AIQMATINPAECY 252 (422)
T ss_pred HHHHHhHHHHHHc
Confidence 9999999997665
No 23
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=67.75 E-value=28 Score=35.04 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=52.5
Q ss_pred HHHHHcCcEEEEE-eccccCChhHHHHHHHHHHHHHHHhC-CCcEEEccCC--CCCC-C---------CcC---HHH-HH
Q 008253 3 KAAIERGVYFELT-YSDLILDVQLRRQMISNAKLLVDWTR-GKNLILSSGA--SSVT-E---------LRG---PYD-VA 64 (572)
Q Consensus 3 RaAIERGI~FEI~-YSPaIrDs~aRRn~ISNArqLIRaTR-GKNIIISSGA--~S~l-E---------LRS---PyD-VI 64 (572)
..++++|..+.+. .+|.++....+.+ +..+..+++..- ..+|.|+|.. +.+. . .-+ ... +.
T Consensus 237 ~~~~~~G~~~~v~~~~~~~~~~~~~~~-~~~l~~~~~~G~~~d~v~l~tD~~~~~~~~~~~g~~~~~g~~~~~~l~~~~~ 315 (388)
T PRK10657 237 LEFAKKGGVIDLTTSDPDFLGEGEVAP-AEALKRALEAGVPLSRVTLSSDGNGSLPKFDEDGNLVGLGVGSVESLLEEVR 315 (388)
T ss_pred HHHHHcCCeEEEecCCCcccccCccCH-HHHHHHHHHcCCChhheEEECCCCCCCceeccCCCEeccCcCchhhHHHHHH
Confidence 3477899999999 6766654322211 233444444432 3378999974 2211 1 111 222 33
Q ss_pred HHHHHhCCCHHHHHHHHHHhHHHHHH
Q 008253 65 NLSSLLGISMERAKAAVSKNCRALIS 90 (572)
Q Consensus 65 NLasLFGLSeDeAKaALSkNPRsLLl 90 (572)
.+....||+..++.++.+.||..++.
T Consensus 316 ~~~~~~gis~~~~l~~aT~npA~~lg 341 (388)
T PRK10657 316 ELVKDEGLPLEDALKPLTSNVARFLK 341 (388)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhC
Confidence 33346799999999999999987763
No 24
>PRK08123 histidinol-phosphatase; Reviewed
Probab=66.87 E-value=5.9 Score=39.04 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=35.5
Q ss_pred CHHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhC--CCcEEEccCCCCCCCCc
Q 008253 1 MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELR 58 (572)
Q Consensus 1 MVRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTR--GKNIIISSGA~S~lELR 58 (572)
++++++++|+.+||+-+.+-+.. ..-......+++..+ |..|+|+|.|-.+.++.
T Consensus 202 il~~~~~~g~~lEINtsgl~~~~---~~~~yP~~~il~~~~e~g~~itlgSDAH~~~~vg 258 (270)
T PRK08123 202 ILALIKKRGYELDFNTAGLRKPY---CGEPYPPGEIITLAKKLGIPLVYGSDAHSAADVG 258 (270)
T ss_pred HHHHHHHcCCEEEEEchhhcCCC---CCCCCCcHHHHHHHHHcCCCEEEeCCCCCHHHHH
Confidence 36889999999999987654320 000112233333333 77799999999877663
No 25
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=65.34 E-value=6.6 Score=38.26 Aligned_cols=52 Identities=25% Similarity=0.335 Sum_probs=35.7
Q ss_pred HHHHHHcCcEEEEEeccccCChh---HHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCc
Q 008253 2 IKAAIERGVYFELTYSDLILDVQ---LRRQMISNAKLLVDWTRGKNLILSSGASSVTELR 58 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~---aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELR 58 (572)
+++++++|+.+||+-+.+-+... --..++..++++ |.+|+|+|.|-.+-++-
T Consensus 191 l~~~~~~g~~lEiNt~g~r~~~~~~yP~~~il~~~~~~-----g~~itlgSDAH~~~~vg 245 (253)
T TIGR01856 191 LKLVASQGKALEFNTSGLRKPLEEAYPSKELLNLAKEL-----GIPLVLGSDAHGPGDVG 245 (253)
T ss_pred HHHHHHcCCEEEEEcHhhcCCCCCCCCCHHHHHHHHHc-----CCCEEecCCCCCHHHHh
Confidence 67899999999999986543211 112344444443 77899999999876653
No 26
>PTZ00124 adenosine deaminase; Provisional
Probab=58.10 E-value=24 Score=37.21 Aligned_cols=80 Identities=13% Similarity=0.061 Sum_probs=55.8
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHHHHH
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAV 81 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAKaAL 81 (572)
++...++||.+|+|-..=+.-.....-.-.-++.++ ..|-+|.|+|.-...+.-.-..+...+...|||+.++-++..
T Consensus 263 ~~~l~~~~I~lEvCPtSN~~~~~v~~~~~HPi~~l~--~~Gv~v~InTDDp~~~~t~l~~Ey~~~~~~~gls~~~l~~l~ 340 (362)
T PTZ00124 263 IDMVKEKDILLEVCPISNVLLNNAKSMDTHPIRKLY--DAGVKVSVNSDDPGMFLTNINDDYEELYTHLNFTLADFMKMN 340 (362)
T ss_pred HHHHHHcCCeEEECCcchhhhhcCCchhhHHHHHHH--HCCCcEEEeCCCccccCCChhHHHHHHHHHcCCCHHHHHHHH
Confidence 566789999999998776543211111112233333 348899999998888887778888888899999998866543
Q ss_pred HH
Q 008253 82 SK 83 (572)
Q Consensus 82 Sk 83 (572)
.+
T Consensus 341 ~n 342 (362)
T PTZ00124 341 EW 342 (362)
T ss_pred HH
Confidence 33
No 27
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=56.32 E-value=24 Score=38.08 Aligned_cols=83 Identities=34% Similarity=0.431 Sum_probs=62.7
Q ss_pred HHHHHHcCcEEEEEeccccCC-hhHHHHHHHHHHHHHHHhCC-CcEEEccCCCCCCCCcCH-HHHHHHHH---HhCCCHH
Q 008253 2 IKAAIERGVYFELTYSDLILD-VQLRRQMISNAKLLVDWTRG-KNLILSSGASSVTELRGP-YDVANLSS---LLGISME 75 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrD-s~aRRn~ISNArqLIRaTRG-KNIIISSGA~S~lELRSP-yDVINLas---LFGLSeD 75 (572)
++.|.+|||.|.+--+-+-.+ .-+|+. .++| -+-+|||.-.....+-.| +|+++.++ -+||+-.
T Consensus 234 vrra~erGV~fD~ghG~asfsf~vAr~a----------ia~GllP~~ISSDlh~~~~~n~Pv~dla~~mSKllalgmpl~ 303 (386)
T COG3964 234 VRRARERGVIFDAGHGRASFSFNVARRA----------IANGLLPDIISSDLHTITKLNGPVYDLAWIMSKLLALGMPLT 303 (386)
T ss_pred HHHHHhcceEEEccCCcceeeHHHHHHH----------HhcCCCcceeeccceeeeecCchHHHHHHHHHHHHHcCCcHH
Confidence 688999999999877665544 233332 2344 478999998887777777 68888765 4699999
Q ss_pred HHHHHHHHhHHHHHHhhhh
Q 008253 76 RAKAAVSKNCRALISNALR 94 (572)
Q Consensus 76 eAKaALSkNPRsLLl~AlR 94 (572)
+..+|.+.||..+|..+..
T Consensus 304 ~Vi~avT~npA~~i~l~~~ 322 (386)
T COG3964 304 DVINAVTHNPAVLIGLAEI 322 (386)
T ss_pred HHHHHHhcCHHHHhCcccc
Confidence 9999999999888766533
No 28
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=53.49 E-value=22 Score=31.89 Aligned_cols=82 Identities=18% Similarity=0.123 Sum_probs=48.3
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCcCHHHHHHHHH-H--hCCCHHHHH
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSS-L--LGISMERAK 78 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELRSPyDVINLas-L--FGLSeDeAK 78 (572)
++...++|+.+++|-....... .+...+..++.+++ .|-.++|+|-......--.+...+..+. . +||+..++.
T Consensus 189 ~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~g~~~~lgTD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (275)
T cd01292 189 LELLKEAGVSLEVCPLSNYLLG-RDGEGAEALRRLLE--LGIRVTLGTDGPPHPLGTDLLALLRLLLKVLRLGLSLEEAL 265 (275)
T ss_pred HHHHHHcCCeEEECCccccccc-CCcCCcccHHHHHH--CCCcEEEecCCCCCCCCCCHHHHHHHHHHHHhcCCCHHHHH
Confidence 4566788999999977655431 01111222333432 3689999997755422223334443332 2 347999999
Q ss_pred HHHHHhHH
Q 008253 79 AAVSKNCR 86 (572)
Q Consensus 79 aALSkNPR 86 (572)
++++.||.
T Consensus 266 ~~~t~n~a 273 (275)
T cd01292 266 RLATINPA 273 (275)
T ss_pred HHHhcccc
Confidence 99988873
No 29
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=52.25 E-value=72 Score=35.47 Aligned_cols=81 Identities=11% Similarity=0.111 Sum_probs=56.6
Q ss_pred HHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCc---CHHHHHHHHHHhCCCHHHHHH
Q 008253 3 KAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELR---GPYDVANLSSLLGISMERAKA 79 (572)
Q Consensus 3 RaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELR---SPyDVINLasLFGLSeDeAKa 79 (572)
..++++|.++.+..+..-++- ..+..++....+.++.|+|...++.++- ....++..+.-+|++..+|-+
T Consensus 211 ~e~~~~Gm~~~ir~gs~~~n~-------~~~~~~~~~~~~~~~~l~TD~~~~~~~~~~g~l~~~v~~ai~~g~~~~~Al~ 283 (552)
T TIGR01178 211 REKLRLGMKLMIREGSAAKNL-------EALHPLINEKNCRSLMLCTDDRHVNDILNEGHINHIVRRAIEHGVDPFDALQ 283 (552)
T ss_pred HHHHHCCCEEEEeCCccccCH-------HHHHHHHhhcCCceEEEEeCCCChhHHHhcCCHHHHHHHHHHcCCCHHHHHH
Confidence 568899999999877666553 2333333333678899999865544432 244566666668999999999
Q ss_pred HHHHhHHHHHH
Q 008253 80 AVSKNCRALIS 90 (572)
Q Consensus 80 ALSkNPRsLLl 90 (572)
+.|.||...+-
T Consensus 284 maT~npA~~lg 294 (552)
T TIGR01178 284 MASINPAEHFG 294 (552)
T ss_pred HHHHHHHHHcC
Confidence 99999976654
No 30
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=50.51 E-value=48 Score=33.39 Aligned_cols=80 Identities=10% Similarity=0.027 Sum_probs=53.0
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHHHHH
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAV 81 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAKaAL 81 (572)
++...++||.+|+|...=+.......-.-.-++.+++ .|-+|.|+|.....+.---..+...++..|||+.++-++..
T Consensus 207 ~~~l~~~~i~ie~CP~SN~~~~~~~~~~~hP~~~~~~--~G~~v~i~TDd~~~~~~~l~~E~~~~~~~~~l~~~~l~~l~ 284 (305)
T cd00443 207 IYLVKLRNIPIEVCPTSNVVLGTVQSYEKHPFMRFFK--AGLPVSLSTDDPGIFGTSLSEEYSLAAKTFGLTFEDLCELN 284 (305)
T ss_pred HHHHHHcCCEEEECcchhhhhcCCCChhhChHHHHHH--CCCeEEEeCCCCcccCCChHHHHHHHHHHcCcCHHHHHHHH
Confidence 4567799999999987654321110000112333332 38899999988887777667777778889999998865544
Q ss_pred HH
Q 008253 82 SK 83 (572)
Q Consensus 82 Sk 83 (572)
.+
T Consensus 285 ~n 286 (305)
T cd00443 285 RN 286 (305)
T ss_pred HH
Confidence 43
No 31
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=49.74 E-value=39 Score=33.49 Aligned_cols=90 Identities=17% Similarity=0.199 Sum_probs=51.3
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCcCHHHHHHH-HHHhCCCHHHHHHH
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANL-SSLLGISMERAKAA 80 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELRSPyDVINL-asLFGLSeDeAKaA 80 (572)
++...++||.+++|-..-+.-...+..-...++.++ -.|.+|.|+|........ ...+.+.+ +..+||+..+-++
T Consensus 227 ~~~l~~~gi~v~~~P~sn~~l~~~~~~~~~p~~~l~--~~Gv~v~lgTD~~~~~~~-~~~~e~~~~~~~~~l~~~el~~- 302 (325)
T cd01320 227 VKRLAERNIPLEVCPTSNVQTGAVKSLAEHPLRELL--DAGVKVTINTDDPTVFGT-YLTDEYELLAEAFGLTEEELKK- 302 (325)
T ss_pred HHHHHHcCCeEEECCCccccccccCCcccChHHHHH--HCCCEEEECCCCCcccCC-CHHHHHHHHHHHcCCCHHHHHH-
Confidence 456778999999997654432111111122334443 248899999986543332 33344444 4578999999655
Q ss_pred HHHhH-HHHHHhhhhc
Q 008253 81 VSKNC-RALISNALRK 95 (572)
Q Consensus 81 LSkNP-RsLLl~AlRR 95 (572)
++.|+ +........|
T Consensus 303 ~~~na~~~~f~~~~~k 318 (325)
T cd01320 303 LARNAVEASFLSEEEK 318 (325)
T ss_pred HHHHHHHHhCCCHHHH
Confidence 55555 4444444333
No 32
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=47.84 E-value=42 Score=34.73 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=56.4
Q ss_pred HHHHHHcCcEEEEEec----------cccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCC--cCHH--------
Q 008253 2 IKAAIERGVYFELTYS----------DLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTEL--RGPY-------- 61 (572)
Q Consensus 2 VRaAIERGI~FEI~YS----------PaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lEL--RSPy-------- 61 (572)
++..+++|++++++.- |.+ +-..-..-+.....|++...+..|++|..+.....+ .+..
T Consensus 200 ~~~la~~G~~l~~D~~g~~~~g~~~~~~~-~~~~d~~ri~~l~~L~~~Gy~~qIlLS~D~~~k~~~~~~gg~g~~~~~i~ 278 (308)
T PF02126_consen 200 HRELADRGVYLEFDTIGREFSGKDKNPRV-GYPPDEERIELLKELIEEGYADQILLSHDIGRKSRLYRYGGGGYGYIYIL 278 (308)
T ss_dssp HHHHHHTT-EEEETTTT-B-TTTTTCHSC-TTS-HHHHHHHHHHHHHTTTGGGEEE-HHHESEEGSSSCCHHHHTTTHHH
T ss_pred HHHHHhcCCEEEecCCcccccCcccCccC-CCCCHHHHHHHHHHHHHcCCcCcEEEeccccccccccccCCCCccHHHHH
Confidence 3567899999998554 111 112223445677889999999999999998873333 2221
Q ss_pred -HHHHHHHHhCCCHHHHHHHHHHhHHHHH
Q 008253 62 -DVANLSSLLGISMERAKAAVSKNCRALI 89 (572)
Q Consensus 62 -DVINLasLFGLSeDeAKaALSkNPRsLL 89 (572)
.++=.+.--|+++++-.+.+..||+.++
T Consensus 279 ~~fiP~L~~~Gv~~~~i~~ilv~NP~r~l 307 (308)
T PF02126_consen 279 TRFIPRLKERGVSEEDIDKILVENPARIL 307 (308)
T ss_dssp HTHHHHHHHTTS-HHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHCHHHHc
Confidence 2333344459999999999999998876
No 33
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=47.13 E-value=98 Score=31.73 Aligned_cols=83 Identities=19% Similarity=0.194 Sum_probs=51.5
Q ss_pred HHHHcCcEEEEEeccccCC---hhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHHHH
Q 008253 4 AAIERGVYFELTYSDLILD---VQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAA 80 (572)
Q Consensus 4 aAIERGI~FEI~YSPaIrD---s~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAKaA 80 (572)
...+.|+.+- +.|.... ...+...+.+++.|.+.. |..+.|+|.... ...|....-+.++..+||+.++|.++
T Consensus 233 ~la~~gv~v~--~~P~~~~~~~~~~~~~~~~~~~~l~~aG-Gv~valgsD~~~-~~~~~l~~~~~~a~~~gl~~~~al~~ 308 (359)
T cd01309 233 ELAKHGIPVI--YGPTLTLPKKVEEVNDAIDTNAYLLKKG-GVAFAISSDHPV-LNIRNLNLEAAKAVKYGLSYEEALKA 308 (359)
T ss_pred HHHHcCCCEE--ECccccccccHHHhhcchhhHHHHHHcC-CceEEEECCCCC-ccchhHHHHHHHHHHcCCCHHHHHHH
Confidence 3445677653 3443321 123444555666555552 478888876532 23454444455666789999999999
Q ss_pred HHHhHHHHHH
Q 008253 81 VSKNCRALIS 90 (572)
Q Consensus 81 LSkNPRsLLl 90 (572)
+|.||..++-
T Consensus 309 ~T~n~A~~lg 318 (359)
T cd01309 309 ITINPAKILG 318 (359)
T ss_pred HHHHHHHHhC
Confidence 9999977764
No 34
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=46.79 E-value=1.3e+02 Score=29.39 Aligned_cols=82 Identities=18% Similarity=0.258 Sum_probs=54.2
Q ss_pred CHHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCC--C-------CCCcCHHH-HHHHHHHh
Q 008253 1 MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASS--V-------TELRGPYD-VANLSSLL 70 (572)
Q Consensus 1 MVRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S--~-------lELRSPyD-VINLasLF 70 (572)
|++.+++.|++|=|.=.-..++.. +.+.+++......|+|=|.+.- + ..-....+ +..|+.+.
T Consensus 163 ~~~~~~~~g~~~S~~~~~~~~~~~-------~~~~~~~~ip~drillETD~P~~~~~~~~~~~~~p~~i~~~~~~la~~~ 235 (255)
T PF01026_consen 163 EAKKFLDLGCYFSFSGAITFKNSK-------KVRELIKAIPLDRILLETDAPYLAPDPYRGKPNEPSNIPKVAQALAEIK 235 (255)
T ss_dssp HHHHHHHTTEEEEEEGGGGSTTSH-------HHHHHHHHS-GGGEEEE-BTTSSECTTSTTSE--GGGHHHHHHHHHHHH
T ss_pred HHHHHHhcCceEEecccccccccH-------HHHHHHhcCChhhEEEcCCCCcCCccccCCCCCChHHHHHHHHHHHHHc
Confidence 467888999997655433332211 3677888889999999999842 1 12222233 33467789
Q ss_pred CCCHHHHHHHHHHhHHHHH
Q 008253 71 GISMERAKAAVSKNCRALI 89 (572)
Q Consensus 71 GLSeDeAKaALSkNPRsLL 89 (572)
|++.++..+++..|++.+.
T Consensus 236 ~~~~e~~~~~~~~N~~r~f 254 (255)
T PF01026_consen 236 GISLEELAQIIYENAKRLF 254 (255)
T ss_dssp TSTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 35
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=43.03 E-value=1.4e+02 Score=30.99 Aligned_cols=86 Identities=21% Similarity=0.219 Sum_probs=67.5
Q ss_pred CHHHHHHcCcEEEEEeccccCC---hhHHHHHHHHHHHHHHHhCCCcEEEccC---CC-CCCCCcCHHHHHHHHHHh---
Q 008253 1 MIKAAIERGVYFELTYSDLILD---VQLRRQMISNAKLLVDWTRGKNLILSSG---AS-SVTELRGPYDVANLSSLL--- 70 (572)
Q Consensus 1 MVRaAIERGI~FEI~YSPaIrD---s~aRRn~ISNArqLIRaTRGKNIIISSG---A~-S~lELRSPyDVINLasLF--- 70 (572)
++++.+++|=.+.|+|.+.+-. ...-..++.++.-++.+..-..|-|.|. .. .+..+..+.++-+|...|
T Consensus 212 ~i~~ia~~GGvigi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~dhVgiGsDfdg~~~~~~gl~~~~~~~~l~~~L~~r 291 (309)
T cd01301 212 QLKAIAETGGVIGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHVGLGSDFDGIGGTPGGLEDVSDLPNLTAELLER 291 (309)
T ss_pred HHHHHHHcCCEEEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCCeEEECcccCCCCCCccccCCHHHHHHHHHHHHHc
Confidence 3678889999999999887642 3445568888888888888888999883 33 345688999999998755
Q ss_pred CCCHHHHHHHHHHhHH
Q 008253 71 GISMERAKAAVSKNCR 86 (572)
Q Consensus 71 GLSeDeAKaALSkNPR 86 (572)
|.++++.+..+..|..
T Consensus 292 G~s~~~i~~i~g~N~l 307 (309)
T cd01301 292 GYSEEEIEKIAGGNFL 307 (309)
T ss_pred CCCHHHHHHHHhhchh
Confidence 9999999988888764
No 36
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.46 E-value=49 Score=35.41 Aligned_cols=54 Identities=19% Similarity=0.120 Sum_probs=43.6
Q ss_pred CCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHHHHHHHhHHHHHHhhhhc
Q 008253 42 GKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRK 95 (572)
Q Consensus 42 GKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAKaALSkNPRsLLl~AlRR 95 (572)
|..|.|++-.--...+.+....++|+...||+..+|.+|+|-||...|-...+.
T Consensus 306 GV~vai~TD~~~~~~~~~l~~~m~l~~~~gmtp~EaL~a~T~naA~alG~~~~~ 359 (406)
T COG1228 306 GVKVAIGTDHNPGTSHGSLALEMALAVRLGMTPEEALKAATINAAKALGLADKV 359 (406)
T ss_pred CCEEEEEcCCCCCchhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccc
Confidence 778888887765444788889999999888999999999999997776555333
No 37
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=40.55 E-value=2.1e+02 Score=28.99 Aligned_cols=85 Identities=15% Similarity=0.036 Sum_probs=48.7
Q ss_pred HHHHcCcEEEEEeccc---cCChhHHHHHHHHHHHHHHHhC-CCcEEEccCCCC--CCCC----------cCHH---HHH
Q 008253 4 AAIERGVYFELTYSDL---ILDVQLRRQMISNAKLLVDWTR-GKNLILSSGASS--VTEL----------RGPY---DVA 64 (572)
Q Consensus 4 aAIERGI~FEI~YSPa---IrDs~aRRn~ISNArqLIRaTR-GKNIIISSGA~S--~lEL----------RSPy---DVI 64 (572)
.++++|..++|.+.-. +.++..|+ ....+.+++... ...|+|+|-+.. +... -+.. .++
T Consensus 236 ~~~~~G~~v~i~~~~~~~~~~~~~~~~--~~~l~~~~~~g~~~d~i~l~TD~~~~~p~~~~~g~~~~~g~~~~~~~~~~~ 313 (387)
T cd01308 236 EFAKMGGTIDLTSSIDPQFRKEGEVRP--SEALKRLLEQGVPLERITFSSDGNGSLPKFDENGNLVGLGVGSVDTLLREV 313 (387)
T ss_pred HHHHcCCcEEEECCCCccccccCccCh--HHHHHHHHHhCCCCCcEEEEECCCCCcccCccCCeEEecCcCcHHHHHHHH
Confidence 5677899999886422 22221122 344455555543 356899987631 1111 1111 222
Q ss_pred -HHHHHhCCCHHHHHHHHHHhHHHHHH
Q 008253 65 -NLSSLLGISMERAKAAVSKNCRALIS 90 (572)
Q Consensus 65 -NLasLFGLSeDeAKaALSkNPRsLLl 90 (572)
.+...-||+..++.++.+.||..++.
T Consensus 314 ~~~v~~~~i~~~~al~~~T~npA~~lg 340 (387)
T cd01308 314 REAVKCGDIPLEVALRVITSNVARILK 340 (387)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHhC
Confidence 22233469999999999999987764
No 38
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=37.95 E-value=95 Score=32.40 Aligned_cols=82 Identities=27% Similarity=0.175 Sum_probs=54.1
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHHHHH
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAV 81 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAKaAL 81 (572)
++.|.++|+++-.++...++...... ...++.+++ .|..++|+|....+..++ -+..|+...||+..+|-+++
T Consensus 210 a~~a~~~G~~vv~gapn~lrg~s~~g--~~~~~~ll~--~Gv~~al~SD~~p~sll~---~~~~la~~~gl~l~eAl~~a 282 (325)
T cd01306 210 AKAARELGLQTLMGAPNVVRGGSHSG--NVSARELAA--HGLLDILSSDYVPASLLH---AAFRLADLGGWSLPEAVALV 282 (325)
T ss_pred HHHHHHCCCEEEecCcccccCccccc--cHhHHHHHH--CCCeEEEEcCCCcHhHHH---HHHHHHHHcCCCHHHHHHHH
Confidence 46788999998876544454322111 123344444 377889999885332222 34566667899999999999
Q ss_pred HHhHHHHHH
Q 008253 82 SKNCRALIS 90 (572)
Q Consensus 82 SkNPRsLLl 90 (572)
|.||..++-
T Consensus 283 T~nPA~~lG 291 (325)
T cd01306 283 SANPARAVG 291 (325)
T ss_pred hHHHHHHcC
Confidence 999977764
No 39
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=35.07 E-value=1.9e+02 Score=28.81 Aligned_cols=81 Identities=14% Similarity=0.139 Sum_probs=55.7
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCC--CCcC----H----HHHHHHHHHhC
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVT--ELRG----P----YDVANLSSLLG 71 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~l--ELRS----P----yDVINLasLFG 71 (572)
.+.++++|.+| .+++.+.-..++ ..+.+++...--.|++=|.+.-.. -.|+ | .-+..++.+.|
T Consensus 166 a~~~l~~G~~i--S~~g~it~~~~~-----~~~~~~~~ipldriL~ETD~P~l~p~~~~~~~n~p~~~~~~~~~ia~l~~ 238 (258)
T PRK11449 166 AERFVQLGYKI--GVGGTITYPRAS-----KTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFDVLCELRP 238 (258)
T ss_pred HHHHHHCCCEE--EeCccccccCcH-----HHHHHHHhCChhhEEEecCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHC
Confidence 57789999884 667766322221 346777777878889888876311 1222 3 34445588999
Q ss_pred CCHHHHHHHHHHhHHHHH
Q 008253 72 ISMERAKAAVSKNCRALI 89 (572)
Q Consensus 72 LSeDeAKaALSkNPRsLL 89 (572)
++.++..+.+..|.+.++
T Consensus 239 ~~~~el~~~~~~N~~~lf 256 (258)
T PRK11449 239 EPADEIAEVLLNNTYTLF 256 (258)
T ss_pred cCHHHHHHHHHHHHHHHh
Confidence 999999999999988765
No 40
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=34.38 E-value=2.6e+02 Score=28.13 Aligned_cols=80 Identities=20% Similarity=0.231 Sum_probs=47.0
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCC-CcEEEccCCCCCC----CCcCHHHHHHHHHHhCCCHHH
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRG-KNLILSSGASSVT----ELRGPYDVANLSSLLGISMER 76 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRG-KNIIISSGA~S~l----ELRSPyDVINLasLFGLSeDe 76 (572)
++.++++|++|-|..+.... .+.+++.+++ .| ...++|+-..... -......++..+..+|++.++
T Consensus 211 ~~~~~~~G~~~d~~~G~~~~-------~~~~~~~l~~--~G~~~~~lstD~~~~~~~~~p~~~l~~~l~~l~~~gi~~ee 281 (338)
T cd01307 211 VRRARERGVIFDVGHGTASF-------SFRVARAAIA--AGLLPDTISSDIHGRNRTNGPVYALATTLSKLLALGMPLEE 281 (338)
T ss_pred HHHHHhCCEEEEeCCCCCch-------hHHHHHHHHH--CCCCCeeecCCccccCCCCCccccHHHHHHHHHHcCCCHHH
Confidence 46788999997766532111 1123344443 23 3456777552211 111122344444567999999
Q ss_pred HHHHHHHhHHHHHH
Q 008253 77 AKAAVSKNCRALIS 90 (572)
Q Consensus 77 AKaALSkNPRsLLl 90 (572)
+.+.++.||..++.
T Consensus 282 ~~~~~T~NpA~~lg 295 (338)
T cd01307 282 VIEAVTANPARMLG 295 (338)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999988774
No 41
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=34.24 E-value=1.2e+02 Score=31.68 Aligned_cols=80 Identities=11% Similarity=0.034 Sum_probs=53.8
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHH-hCCCcEEEccCCCCCCCC-cCHHHHHHHHHHhC---CCHHH
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDW-TRGKNLILSSGASSVTEL-RGPYDVANLSSLLG---ISMER 76 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRa-TRGKNIIISSGA~S~lEL-RSPyDVINLasLFG---LSeDe 76 (572)
++...+|||.+|||-.+=+.-.... .+.+ +-|-++ ..|-+|.|+|.-...+.- ---.+...+...|| |+.++
T Consensus 239 l~~l~~~~I~lEvCPtSN~~~~~v~--~~~~-HPl~~ll~~Gv~vtinTDDp~~f~t~~l~~Ey~~~~~~~g~~~l~~~~ 315 (345)
T cd01321 239 MDLVKKKNIAIEVCPISNQVLGLVS--DLRN-HPAAALLARGVPVVISSDDPGFWGAKGLSHDFYQAFMGLAPADAGLRG 315 (345)
T ss_pred HHHHHHcCCeEEECcchhhhhcccc--chhh-ChHHHHHHCCCeEEEeCCCcchhCCCCchHHHHHHHHHhccCCCCHHH
Confidence 5677899999999988655321111 1111 223333 348899999999988776 66677777778899 99998
Q ss_pred HHHHHHHh
Q 008253 77 AKAAVSKN 84 (572)
Q Consensus 77 AKaALSkN 84 (572)
-++...+.
T Consensus 316 l~~l~~ns 323 (345)
T cd01321 316 LKQLAENS 323 (345)
T ss_pred HHHHHHHH
Confidence 65544443
No 42
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=33.97 E-value=2.4e+02 Score=28.95 Aligned_cols=80 Identities=28% Similarity=0.386 Sum_probs=47.9
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCC-cEEEccCCCCCCCCcCH-HH---HHHHHHHhCCCHHH
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGK-NLILSSGASSVTELRGP-YD---VANLSSLLGISMER 76 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGK-NIIISSGA~S~lELRSP-yD---VINLasLFGLSeDe 76 (572)
++.+.++|+.|.+.-+ ..+.+ +..+..++ .+|. ++.|+|..........| ++ ++..+.-.|++..+
T Consensus 235 ~~~~~~~G~~~~~~~g------~s~~~-~~~~~~~l--~~G~~~~~lgTD~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 305 (379)
T PRK12394 235 VRQARERGVIFDAANG------RSHFD-MNVARRAI--ANGFLPDIISSDLSTITKLAWPVYSLPWVLSKYLALGMALED 305 (379)
T ss_pred HHHHHhCCeEEEecCC------ccccc-hHHHHHHH--HCCCCceEEECCCCCCCcccCccchHHHHHHHHHHcCCCHHH
Confidence 4568888987766553 11111 12233333 4564 77888866544323233 33 33334457999999
Q ss_pred HHHHHHHhHHHHHH
Q 008253 77 AKAAVSKNCRALIS 90 (572)
Q Consensus 77 AKaALSkNPRsLLl 90 (572)
+.++.+.||..++-
T Consensus 306 ~~~~at~~~a~~~g 319 (379)
T PRK12394 306 VINACTHTPAVLMG 319 (379)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999977763
No 43
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=33.95 E-value=2e+02 Score=30.59 Aligned_cols=88 Identities=13% Similarity=0.004 Sum_probs=47.6
Q ss_pred HHHHcCcEEEEEeccccCCh-hHHHHHHHHHHHHHHHhCC-CcEEEccCCCC--C-CCC---------c---C-HHHHHH
Q 008253 4 AAIERGVYFELTYSDLILDV-QLRRQMISNAKLLVDWTRG-KNLILSSGASS--V-TEL---------R---G-PYDVAN 65 (572)
Q Consensus 4 aAIERGI~FEI~YSPaIrDs-~aRRn~ISNArqLIRaTRG-KNIIISSGA~S--~-lEL---------R---S-PyDVIN 65 (572)
.|++||..|.+..+-....- .....-...++.+++..-. -+|.|||-+.. + ++. - + +..+..
T Consensus 238 ~~~~~gg~iDv~~~~~~~~l~~~~~~~~~~~~~~~~~Gv~~~~i~isSD~~gs~p~~~~~g~~~~~g~g~~~sl~~~~~~ 317 (389)
T TIGR01975 238 EFAKKGGTIDLTSSIDPQFRKEGEVAPAEGIKKALEAGVPLEKVTFSSDGNGSQPFFDENGELTGLGVGSFETLFEEVRE 317 (389)
T ss_pred HHHHhCCcEEEeCCCCccchhccccChHHHHHHHHHcCCCcceEEEEeCCCCCCCccccccccccCCcCcHHHHHHHHHH
Confidence 57899999999944222110 0001111122333332211 24689995532 1 111 0 1 233444
Q ss_pred HHHHhCCCHHHHHHHHHHhHHHHHHh
Q 008253 66 LSSLLGISMERAKAAVSKNCRALISN 91 (572)
Q Consensus 66 LasLFGLSeDeAKaALSkNPRsLLl~ 91 (572)
+....||+..+|-++++.||..++..
T Consensus 318 lv~~g~ls~~eal~~~T~npA~~Lgl 343 (389)
T TIGR01975 318 AVKDGDVPLEKALRVITSNVAGVLNL 343 (389)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHhCC
Confidence 44555699999999999999887653
No 44
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=33.81 E-value=1.9e+02 Score=28.96 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=50.6
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCcCHHHHHHHHHHh---------CC
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLL---------GI 72 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELRSPyDVINLasLF---------GL 72 (572)
++.+.++|+.+++|-..-..- ...+..++.+++ .|.++.++|.+.....--.|...+.++.++ +|
T Consensus 259 ~~~l~~~gi~~~~~p~~~~~~----~~~~~~~~~~~~--~Gv~~~~GsD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (411)
T cd01298 259 IELLAETGTGVAHNPASNMKL----ASGIAPVPEMLE--AGVNVGLGTDGAASNNNLDMFEEMRLAALLQKLAHGDPTAL 332 (411)
T ss_pred HHHHHHcCCeEEEChHHhhhh----hhCCCCHHHHHH--CCCcEEEeCCCCccCCCcCHHHHHHHHHHHhccccCCCCcC
Confidence 456778899888774321110 011223344433 377888888765443334566555555433 68
Q ss_pred CHHHHHHHHHHhHHHHHH
Q 008253 73 SMERAKAAVSKNCRALIS 90 (572)
Q Consensus 73 SeDeAKaALSkNPRsLLl 90 (572)
+..+|.++.|.+|..++-
T Consensus 333 ~~~~al~~~T~~~A~~lg 350 (411)
T cd01298 333 PAEEALEMATIGGAKALG 350 (411)
T ss_pred CHHHHHHHHHhhHHHHhC
Confidence 999999999999966553
No 45
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=31.05 E-value=1.1e+02 Score=30.67 Aligned_cols=91 Identities=11% Similarity=0.083 Sum_probs=52.5
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHHHHH
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAV 81 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAKaAL 81 (572)
++...++||.+|+|-..-+.-......-...++.++ ..|.+|.|+|.....+.-.-..+...+...+||+..+-+ ++
T Consensus 226 i~~l~~~gi~v~~cP~Sn~~l~~~~~~~~~pi~~l~--~~Gv~v~igTD~~~~~~~~l~~e~~~a~~~~~l~~~el~-~~ 302 (324)
T TIGR01430 226 LKRLAQENITLEVCPTSNVALGVVKSLAEHPLRRFL--EAGVKVTLNSDDPAYFGSYLTEEYEIAAKHAGLTEEELK-QL 302 (324)
T ss_pred HHHHHHcCceEEECCcccccccccCCcccChHHHHH--HCCCEEEECCCCCcccCCCHHHHHHHHHHHcCCCHHHHH-HH
Confidence 556778999999997765432200000112233332 248899999976554544344445555557999999944 55
Q ss_pred HHhH-HHHHHhhhhc
Q 008253 82 SKNC-RALISNALRK 95 (572)
Q Consensus 82 SkNP-RsLLl~AlRR 95 (572)
+.|. +........|
T Consensus 303 ~~na~~~~f~~~~~k 317 (324)
T TIGR01430 303 ARNALEGSFLSDDEK 317 (324)
T ss_pred HHHHHHHhCCCHHHH
Confidence 5555 5554444333
No 46
>PRK09358 adenosine deaminase; Provisional
Probab=30.99 E-value=1.5e+02 Score=29.93 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=45.2
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCcCHHHHHHH-HHHhCCCHHHHHHH
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANL-SSLLGISMERAKAA 80 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELRSPyDVINL-asLFGLSeDeAKaA 80 (572)
++...++||.+|+|-..-+.-....-.-...++.++ ..|-+|.|+|........ +..+-+.+ +..|||+.++..+.
T Consensus 236 ~~~l~~~gi~v~~cP~Sn~~l~~~~~~~~~pi~~l~--~~Gv~v~lgTD~~~~~~~-~l~~e~~~~~~~~~l~~~el~~l 312 (340)
T PRK09358 236 MARLADRRIPLEVCPTSNVQTGAVPSLAEHPLKTLL--DAGVRVTINTDDPLVFGT-TLTEEYEALAEAFGLSDEDLAQL 312 (340)
T ss_pred HHHHHHcCCeEEECCCccccccccCCcccChHHHHH--HCCCEEEECCCCCcccCC-CHHHHHHHHHHHhCCCHHHHHHH
Confidence 456779999999998754432110000012233333 248899999987665554 44444444 45689999996443
No 47
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=30.70 E-value=71 Score=25.78 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=29.5
Q ss_pred CCCCCCcCHHHHHHHHHHhCCCHHHHHHHHHHhH
Q 008253 52 SSVTELRGPYDVANLSSLLGISMERAKAAVSKNC 85 (572)
Q Consensus 52 ~S~lELRSPyDVINLasLFGLSeDeAKaALSkNP 85 (572)
+...++.-|++|...+.-||+++++.++||...-
T Consensus 12 ~~~I~~~e~~ev~ywa~~~gvt~~~L~~AV~~vG 45 (57)
T PF12244_consen 12 RDRIDLSEPYEVRYWAKRFGVTEEQLREAVRAVG 45 (57)
T ss_pred hHhcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHC
Confidence 3457889999999999999999999999987653
No 48
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=28.29 E-value=4e+02 Score=26.27 Aligned_cols=86 Identities=15% Similarity=0.083 Sum_probs=49.5
Q ss_pred HHHHHHcCcEEEEEeccccC----------Chh--H-----HHHHHHHHHHHHHHhCCCcEEEccCCCC-CCCCcCHHHH
Q 008253 2 IKAAIERGVYFELTYSDLIL----------DVQ--L-----RRQMISNAKLLVDWTRGKNLILSSGASS-VTELRGPYDV 63 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIr----------Ds~--a-----RRn~ISNArqLIRaTRGKNIIISSGA~S-~lELRSPyDV 63 (572)
++...++|+.+-.|...... ... . +.+.+..++.+.+ .|-+|.+.|.+.. .....+...-
T Consensus 208 ~~~l~~~g~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~Gv~v~~GTD~~~~~~~~~~~~~e 285 (342)
T cd01299 208 IELMKEKGIFLVPTLATYEALAAEGAAPGLPADSAEKVALVLEAGRDALRRAHK--AGVKIAFGTDAGFPVPPHGWNARE 285 (342)
T ss_pred HHHHHHCCcEEeCcHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHH--cCCeEEEecCCCCCCCchhHHHHH
Confidence 45567889988776554321 000 0 2223333333322 3778888887653 1111223333
Q ss_pred HHHHHHhCCCHHHHHHHHHHhHHHHH
Q 008253 64 ANLSSLLGISMERAKAAVSKNCRALI 89 (572)
Q Consensus 64 INLasLFGLSeDeAKaALSkNPRsLL 89 (572)
+.++.-.|++..+|.++.+.++..++
T Consensus 286 ~~~~~~~~~~~~~al~~~T~~~a~~~ 311 (342)
T cd01299 286 LELLVKAGGTPAEALRAATANAAELL 311 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 44455679999999999999997665
No 49
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=26.23 E-value=23 Score=35.60 Aligned_cols=33 Identities=36% Similarity=0.510 Sum_probs=18.1
Q ss_pred HHHHHHHHhC-CCcEEEccCCCCCCCCcCHHHHH
Q 008253 32 NAKLLVDWTR-GKNLILSSGASSVTELRGPYDVA 64 (572)
Q Consensus 32 NArqLIRaTR-GKNIIISSGA~S~lELRSPyDVI 64 (572)
|.-.|-.+.+ ||+||||+|..+.-|++.-.+++
T Consensus 102 n~~lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~ 135 (241)
T PF03102_consen 102 NLPLLEYIAKTGKPVILSTGMSTLEEIERAVEVL 135 (241)
T ss_dssp -HHHHHHHHTT-S-EEEE-TT--HHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCcEEEECCCCCHHHHHHHHHHH
Confidence 3344444444 99999999999877776665555
No 50
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=25.20 E-value=2.3e+02 Score=28.45 Aligned_cols=82 Identities=21% Similarity=0.181 Sum_probs=48.7
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCC-CCCCcCHHHHHHHH-HHhCCCHHHHHH
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASS-VTELRGPYDVANLS-SLLGISMERAKA 79 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S-~lELRSPyDVINLa-sLFGLSeDeAKa 79 (572)
++...++|+.+.+|-..-+.-. ..+..++.+++ .|-++.|.|.... ......+...+.++ ...||+..++.+
T Consensus 248 l~~la~~g~~~~~~P~~~~~l~----~~~~p~~~l~~--~Gv~v~lgTD~~~~~~~~~~~~~~~~~~~~~~~ls~~eal~ 321 (377)
T TIGR01224 248 IKALAEAGTVAVLLPGTTFYLR----ETYPPARQLID--YGVPVALATDLNPGSSPTLSMQLIMSLACRLMKMTPEEALH 321 (377)
T ss_pred HHHHHhcCCEEEECchHHHhcC----CcCccHHHHHH--CCCCEEEECCCCCCCChhHHHHHHHHHHHHhcCCCHHHHHH
Confidence 3456688998877654322111 11223344443 5788899987532 22223344443333 357999999999
Q ss_pred HHHHhHHHHH
Q 008253 80 AVSKNCRALI 89 (572)
Q Consensus 80 ALSkNPRsLL 89 (572)
+.+.+|..++
T Consensus 322 ~~T~~~A~~l 331 (377)
T TIGR01224 322 AATVNAAYAL 331 (377)
T ss_pred HHHHHHHHHh
Confidence 9999996654
No 51
>PRK09237 dihydroorotase; Provisional
Probab=23.18 E-value=5.5e+02 Score=26.26 Aligned_cols=80 Identities=23% Similarity=0.279 Sum_probs=47.1
Q ss_pred HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCC-cEEEccCCCCCCCCcC----HHHHHHHHHHhCCCHHH
Q 008253 2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGK-NLILSSGASSVTELRG----PYDVANLSSLLGISMER 76 (572)
Q Consensus 2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGK-NIIISSGA~S~lELRS----PyDVINLasLFGLSeDe 76 (572)
++.++++|++|.|..+....+ +.+++.+++ .|. ...+++.......+.. ...++..+..+|++..+
T Consensus 230 a~~~l~~G~~~~ig~g~~~~~-------~~~~~~l~~--~g~~~~~l~tD~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~ 300 (380)
T PRK09237 230 VLEALERGVRLDVGHGTASFS-------FKVAEAAIA--AGILPDTISTDIYCRNRINGPVYSLATVMSKFLALGMPLEE 300 (380)
T ss_pred HHHHHHCCEEEEecCCCCccc-------HHHHHHHHH--CCCCceEEECCCCCCCcccchHhHHHHHHHHHHHhCCCHHH
Confidence 356889999999876643322 122334432 232 3467775422111112 23333334447999999
Q ss_pred HHHHHHHhHHHHHH
Q 008253 77 AKAAVSKNCRALIS 90 (572)
Q Consensus 77 AKaALSkNPRsLLl 90 (572)
+.+..+.||..++-
T Consensus 301 al~~aT~n~A~~lg 314 (380)
T PRK09237 301 VIAAVTKNAADALR 314 (380)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999977663
No 52
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=21.19 E-value=4.4e+02 Score=27.39 Aligned_cols=90 Identities=21% Similarity=0.286 Sum_probs=68.5
Q ss_pred CHHHHHHcCcEEEEEeccccCC-----hhHHHHHHHHHHHHHHHhCCCcEEEccC---CCC-CCCCcCHHHHHHHHHHh-
Q 008253 1 MIKAAIERGVYFELTYSDLILD-----VQLRRQMISNAKLLVDWTRGKNLILSSG---ASS-VTELRGPYDVANLSSLL- 70 (572)
Q Consensus 1 MVRaAIERGI~FEI~YSPaIrD-----s~aRRn~ISNArqLIRaTRGKNIIISSG---A~S-~lELRSPyDVINLasLF- 70 (572)
++++-+++|=.+-|++.|.+-+ ...-..++.++.-++.+..-..|=|.|. ... +.+++.+.++-+|...|
T Consensus 218 ~iraia~~GGviGi~~~~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G~dhVgiGsDfdg~~~~~~gl~~~~~~~~l~~~L~ 297 (320)
T PF01244_consen 218 QIRAIAERGGVIGINFYPAFLGDDWDPRASLDDLVDHIDYIVDLVGIDHVGIGSDFDGIDGPPEGLEDPSDLPNLTEELL 297 (320)
T ss_dssp HHHHHHHTT-EEEEESSHHHHSTTHSSG-BHHHHHHHHHHHHHHH-GGGEEEE--BTTTSSHBBTBSSGGGHHHHHHHHH
T ss_pred HHHHHHHCCcEEEEEcchhhhcccccccccHHHHHHHHHHHHHhcCCCeEEECcccCCCCCCCCccCCHHHHHHHHHHHH
Confidence 4788899999999999987733 2456678888888888887677777774 444 78999999999999877
Q ss_pred --CCCHHHHHHHHHHhHHHHHH
Q 008253 71 --GISMERAKAAVSKNCRALIS 90 (572)
Q Consensus 71 --GLSeDeAKaALSkNPRsLLl 90 (572)
|+++++.+..+..|...++.
T Consensus 298 ~rG~s~~~i~kI~g~N~lRv~~ 319 (320)
T PF01244_consen 298 KRGYSEEDIEKILGGNFLRVLR 319 (320)
T ss_dssp HTTS-HHHHHHHHTHHHHHHHH
T ss_pred HCCCCHHHHHHHHhHhHHHHhc
Confidence 99999999999999876653
No 53
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=20.92 E-value=1.6e+02 Score=21.24 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHh
Q 008253 60 PYDVANLSSLLGISMERAKAAVSKN 84 (572)
Q Consensus 60 PyDVINLasLFGLSeDeAKaALSkN 84 (572)
+..|..|..+ |+++++|++||..+
T Consensus 3 ~~~v~~L~~m-Gf~~~~~~~AL~~~ 26 (37)
T PF00627_consen 3 EEKVQQLMEM-GFSREQAREALRAC 26 (37)
T ss_dssp HHHHHHHHHH-TS-HHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHc
Confidence 3456667777 99999999999764
Done!