Query 008254
Match_columns 572
No_of_seqs 406 out of 2424
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 21:28:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03162 golden-2 like transcr 100.0 7.4E-70 1.6E-74 557.4 21.2 238 325-565 230-524 (526)
2 COG4566 TtrR Response regulato 99.9 2.2E-22 4.7E-27 194.5 14.9 161 15-191 2-174 (202)
3 COG0745 OmpR Response regulato 99.8 4.9E-20 1.1E-24 183.5 17.4 147 18-181 1-175 (229)
4 COG2197 CitB Response regulato 99.8 2.9E-19 6.3E-24 175.3 15.1 159 18-192 1-181 (211)
5 TIGR01557 myb_SHAQKYF myb-like 99.8 6.9E-20 1.5E-24 146.6 6.0 55 330-384 1-56 (57)
6 COG2204 AtoC Response regulato 99.8 3.4E-18 7.4E-23 185.1 16.7 119 16-150 3-125 (464)
7 COG4753 Response regulator con 99.8 4E-18 8.6E-23 184.7 13.5 116 17-148 1-123 (475)
8 PRK10840 transcriptional regul 99.8 1.9E-17 4.1E-22 159.1 15.9 161 16-192 2-183 (216)
9 PRK10046 dpiA two-component re 99.7 1E-16 2.2E-21 156.0 18.1 161 14-192 1-195 (225)
10 PF00072 Response_reg: Respons 99.7 1.1E-16 2.5E-21 136.3 15.4 107 20-142 1-112 (112)
11 PRK09483 response regulator; P 99.7 2.6E-16 5.6E-21 148.0 16.9 159 17-191 1-180 (217)
12 PRK10360 DNA-binding transcrip 99.7 5.7E-16 1.2E-20 143.4 16.0 153 17-185 1-163 (196)
13 PRK09958 DNA-binding transcrip 99.7 1.1E-15 2.4E-20 142.4 17.1 154 18-187 1-171 (204)
14 PRK10336 DNA-binding transcrip 99.7 1.9E-15 4E-20 141.7 18.1 141 18-174 1-164 (219)
15 PRK10643 DNA-binding transcrip 99.7 2.6E-15 5.7E-20 140.6 18.6 140 18-173 1-163 (222)
16 TIGR02154 PhoB phosphate regul 99.7 2.7E-15 5.9E-20 140.5 18.4 142 17-174 2-169 (226)
17 PRK10816 DNA-binding transcrip 99.7 2.1E-15 4.5E-20 143.1 17.7 147 18-180 1-170 (223)
18 PRK10529 DNA-binding transcrip 99.7 2.8E-15 6.1E-20 142.0 18.3 145 18-178 2-170 (225)
19 PRK11083 DNA-binding response 99.7 3E-15 6.6E-20 140.8 18.2 142 17-174 3-169 (228)
20 COG4565 CitB Response regulato 99.7 7.2E-16 1.6E-20 151.9 14.2 116 18-149 1-122 (224)
21 PRK11517 transcriptional regul 99.7 4E-15 8.6E-20 140.2 17.8 146 18-179 1-167 (223)
22 PRK10955 DNA-binding transcrip 99.7 4.7E-15 1E-19 140.5 18.2 147 18-181 2-178 (232)
23 PRK09836 DNA-binding transcrip 99.6 6.8E-15 1.5E-19 139.9 18.0 142 18-175 1-166 (227)
24 PRK10161 transcriptional regul 99.6 7.7E-15 1.7E-19 139.7 18.2 142 18-175 3-170 (229)
25 PRK10766 DNA-binding transcrip 99.6 9.9E-15 2.1E-19 137.9 18.8 144 18-177 3-177 (221)
26 PRK09935 transcriptional regul 99.6 1.1E-14 2.4E-19 135.3 17.8 159 16-190 2-180 (210)
27 PRK10430 DNA-binding transcrip 99.6 1.3E-14 2.8E-19 142.2 19.1 162 17-192 1-196 (239)
28 TIGR03787 marine_sort_RR prote 99.6 2.2E-14 4.8E-19 136.1 19.3 141 19-174 2-171 (227)
29 COG3437 Response regulator con 99.6 2.4E-15 5.2E-20 157.4 13.7 116 16-147 13-135 (360)
30 COG0784 CheY FOG: CheY-like re 99.6 1.4E-14 3.1E-19 126.3 16.5 116 15-146 3-125 (130)
31 CHL00148 orf27 Ycf27; Reviewed 99.6 1.9E-14 4.2E-19 137.0 17.9 142 17-174 6-176 (240)
32 TIGR01387 cztR_silR_copR heavy 99.6 1.6E-14 3.4E-19 135.0 16.9 144 20-179 1-167 (218)
33 PRK11475 DNA-binding transcrip 99.6 3.1E-15 6.7E-20 146.9 12.6 148 29-192 2-167 (207)
34 PRK15411 rcsA colanic acid cap 99.6 8.3E-15 1.8E-19 143.1 15.5 158 18-192 1-170 (207)
35 PRK09468 ompR osmolarity respo 99.6 2.5E-14 5.5E-19 137.3 18.3 149 17-181 5-183 (239)
36 PLN03029 type-a response regul 99.6 3.8E-14 8.1E-19 139.6 19.6 120 16-149 7-150 (222)
37 PRK10701 DNA-binding transcrip 99.6 3.2E-14 6.9E-19 137.0 18.4 147 18-180 2-182 (240)
38 PRK13856 two-component respons 99.6 4.5E-14 9.7E-19 136.9 18.5 148 18-181 2-177 (241)
39 PRK15479 transcriptional regul 99.6 5.4E-14 1.2E-18 131.7 18.4 146 18-179 1-168 (221)
40 PRK11173 two-component respons 99.6 3E-14 6.5E-19 137.3 16.8 116 17-148 3-121 (237)
41 PRK10100 DNA-binding transcrip 99.6 8.4E-15 1.8E-19 144.6 13.2 158 16-191 9-187 (216)
42 PRK15369 two component system 99.6 7.8E-14 1.7E-18 127.7 17.9 160 16-191 2-181 (211)
43 PRK09390 fixJ response regulat 99.6 4.5E-14 9.8E-19 128.7 15.8 152 16-183 2-165 (202)
44 PRK10710 DNA-binding transcrip 99.6 1.3E-13 2.7E-18 131.4 19.0 141 18-174 11-175 (240)
45 PRK10651 transcriptional regul 99.6 1.2E-13 2.6E-18 128.3 17.9 160 16-191 5-187 (216)
46 PRK10403 transcriptional regul 99.6 2.7E-13 5.8E-18 125.5 18.0 154 17-186 6-180 (215)
47 COG3706 PleD Response regulato 99.5 1E-13 2.2E-18 149.6 16.5 118 16-149 131-254 (435)
48 COG4567 Response regulator con 99.5 5.9E-14 1.3E-18 132.4 12.1 108 19-142 11-122 (182)
49 PRK10841 hybrid sensory kinase 99.5 4.9E-13 1.1E-17 156.2 17.3 117 16-148 800-920 (924)
50 PRK15347 two component system 99.5 4.8E-13 1E-17 153.1 16.7 116 15-146 688-811 (921)
51 PRK11107 hybrid sensory histid 99.5 4.1E-13 8.9E-18 153.4 15.9 115 16-146 666-786 (919)
52 PRK15115 response regulator Gl 99.5 9.1E-13 2E-17 140.5 16.9 116 17-148 5-124 (444)
53 TIGR02875 spore_0_A sporulatio 99.5 9.3E-13 2E-17 130.2 15.8 115 17-147 2-124 (262)
54 PRK10365 transcriptional regul 99.5 6.5E-13 1.4E-17 140.9 15.6 117 16-148 4-124 (441)
55 PRK11361 acetoacetate metaboli 99.5 7.4E-13 1.6E-17 141.3 16.1 117 14-146 1-121 (457)
56 PRK14084 two-component respons 99.5 1.3E-12 2.9E-17 127.3 15.7 112 18-147 1-118 (246)
57 PRK10923 glnG nitrogen regulat 99.5 1.4E-12 3.1E-17 140.1 17.3 116 17-148 3-122 (469)
58 PRK11697 putative two-componen 99.5 1.5E-12 3.3E-17 125.7 15.7 113 17-147 1-118 (238)
59 KOG0519 Sensory transduction h 99.4 4.9E-13 1.1E-17 154.0 13.6 117 14-145 663-784 (786)
60 PRK09581 pleD response regulat 99.4 7.2E-13 1.6E-17 138.0 13.2 115 16-147 154-274 (457)
61 COG3947 Response regulator con 99.4 2.3E-13 5E-18 139.5 8.9 112 18-147 1-116 (361)
62 PRK11466 hybrid sensory histid 99.4 1.5E-12 3.2E-17 149.6 16.0 117 16-147 680-800 (914)
63 TIGR02956 TMAO_torS TMAO reduc 99.4 2.4E-12 5.1E-17 148.5 16.0 114 17-146 702-822 (968)
64 PRK09959 hybrid sensory histid 99.4 2.6E-12 5.7E-17 152.0 16.5 117 14-146 955-1075(1197)
65 PRK10610 chemotaxis regulatory 99.4 1.7E-11 3.6E-16 101.9 16.5 116 16-147 4-126 (129)
66 TIGR02915 PEP_resp_reg putativ 99.4 3.6E-12 7.9E-17 136.0 15.2 111 20-147 1-119 (445)
67 PRK13435 response regulator; P 99.4 6.8E-12 1.5E-16 112.6 14.6 115 15-148 3-122 (145)
68 TIGR01818 ntrC nitrogen regula 99.4 4.2E-12 9E-17 136.0 15.6 112 20-147 1-116 (463)
69 PRK11091 aerobic respiration c 99.4 5.4E-12 1.2E-16 143.3 15.9 115 16-147 524-645 (779)
70 PRK09581 pleD response regulat 99.4 1.8E-11 3.9E-16 127.5 17.4 115 18-148 3-123 (457)
71 PRK12555 chemotaxis-specific m 99.4 1.1E-11 2.5E-16 128.5 15.6 99 18-132 1-106 (337)
72 PRK13558 bacterio-opsin activa 99.3 2.1E-11 4.5E-16 136.1 14.4 116 16-147 6-127 (665)
73 PRK00742 chemotaxis-specific m 99.3 4.5E-11 9.7E-16 124.7 15.7 102 16-133 2-110 (354)
74 COG2201 CheB Chemotaxis respon 99.2 1.6E-10 3.5E-15 122.0 14.1 101 17-133 1-108 (350)
75 cd00156 REC Signal receiver do 99.2 3.8E-10 8.3E-15 88.8 12.3 108 21-144 1-112 (113)
76 PRK09191 two-component respons 99.2 4.1E-10 9E-15 110.3 15.1 113 18-147 138-254 (261)
77 PRK13837 two-component VirA-li 99.1 4.7E-10 1E-14 129.5 15.7 116 16-148 696-815 (828)
78 COG3707 AmiR Response regulato 99.1 1.1E-09 2.5E-14 106.9 12.1 116 17-148 5-124 (194)
79 PRK13557 histidine kinase; Pro 99.1 2.4E-09 5.3E-14 114.0 14.9 117 16-146 414-534 (540)
80 PRK10693 response regulator of 99.0 4.8E-09 1E-13 108.1 12.0 87 46-148 2-93 (303)
81 PRK15029 arginine decarboxylas 98.9 1.5E-08 3.3E-13 116.5 13.3 117 18-150 1-136 (755)
82 COG3279 LytT Response regulato 98.7 6.1E-08 1.3E-12 97.8 11.1 113 17-147 1-119 (244)
83 PRK11107 hybrid sensory histid 98.2 1.7E-05 3.8E-10 91.3 14.5 111 15-145 534-650 (919)
84 smart00448 REC cheY-homologous 97.7 0.00033 7.1E-09 48.0 7.9 55 18-74 1-55 (55)
85 COG3706 PleD Response regulato 97.6 8.1E-05 1.8E-09 81.4 5.1 91 42-148 13-105 (435)
86 PF06490 FleQ: Flagellar regul 97.0 0.0061 1.3E-07 54.7 10.1 103 19-144 1-107 (109)
87 PF00249 Myb_DNA-binding: Myb- 96.5 0.0047 1E-07 47.3 4.5 48 332-382 1-48 (48)
88 PF03709 OKR_DC_1_N: Orn/Lys/A 95.8 0.086 1.9E-06 47.6 9.9 104 29-147 5-114 (115)
89 TIGR00640 acid_CoA_mut_C methy 95.7 0.32 6.9E-06 45.3 13.5 109 24-147 13-129 (132)
90 cd02071 MM_CoA_mut_B12_BD meth 95.5 0.31 6.6E-06 44.2 12.4 109 19-142 1-121 (122)
91 PRK02261 methylaspartate mutas 95.3 0.58 1.3E-05 43.8 13.8 114 16-145 2-134 (137)
92 PRK10618 phosphotransfer inter 95.0 0.1 2.2E-06 62.4 10.0 53 14-74 686-738 (894)
93 cd02067 B12-binding B12 bindin 93.5 0.87 1.9E-05 40.5 10.4 92 24-130 10-109 (119)
94 PRK15399 lysine decarboxylase 93.3 0.77 1.7E-05 53.8 12.2 115 18-150 1-126 (713)
95 PRK15320 transcriptional activ 93.3 0.45 9.7E-06 48.0 8.8 153 19-192 3-197 (251)
96 PRK15400 lysine decarboxylase 92.8 0.85 1.8E-05 53.5 11.5 115 18-150 1-126 (714)
97 TIGR01501 MthylAspMutase methy 90.5 4.1 8.9E-05 38.4 11.4 105 27-146 15-133 (134)
98 TIGR03815 CpaE_hom_Actino heli 90.3 0.87 1.9E-05 47.5 7.5 83 41-145 1-86 (322)
99 KOG1924 RhoA GTPase effector D 88.8 2.2 4.9E-05 50.2 9.8 28 538-565 610-637 (1102)
100 smart00426 TEA TEA domain. 88.5 0.57 1.2E-05 39.5 3.6 46 334-380 5-67 (68)
101 COG2185 Sbm Methylmalonyl-CoA 87.6 13 0.00028 35.7 12.5 112 16-146 11-138 (143)
102 PF07688 KaiA: KaiA domain; I 87.0 2.3 5.1E-05 44.3 7.8 119 19-152 2-124 (283)
103 COG4999 Uncharacterized domain 86.7 2.8 6E-05 39.4 7.3 105 16-139 10-119 (140)
104 cd02072 Glm_B12_BD B12 binding 86.5 13 0.00028 34.9 11.8 100 27-142 13-127 (128)
105 PRK01130 N-acetylmannosamine-6 85.2 9.7 0.00021 37.7 11.0 84 30-130 107-202 (221)
106 PF10087 DUF2325: Uncharacteri 85.1 10 0.00022 33.0 9.8 85 19-108 1-94 (97)
107 cd02070 corrinoid_protein_B12- 85.0 8.1 0.00018 38.0 10.3 96 17-129 82-190 (201)
108 cd02069 methionine_synthase_B1 84.8 5.9 0.00013 39.8 9.3 77 16-94 87-175 (213)
109 PRK00043 thiE thiamine-phospha 83.1 20 0.00043 34.6 12.0 72 41-129 104-187 (212)
110 PRK00208 thiG thiazole synthas 82.7 4.7 0.0001 41.9 7.7 109 18-147 94-226 (250)
111 cd04728 ThiG Thiazole synthase 82.7 5.3 0.00012 41.4 8.1 110 18-147 94-226 (248)
112 cd03820 GT1_amsD_like This fam 82.5 22 0.00048 34.5 12.1 107 17-146 209-318 (348)
113 TIGR03088 stp2 sugar transfera 81.3 16 0.00036 37.7 11.3 106 17-146 229-337 (374)
114 PRK05749 3-deoxy-D-manno-octul 81.0 15 0.00031 39.4 11.1 110 17-146 262-387 (425)
115 PRK09426 methylmalonyl-CoA mut 80.8 13 0.00029 43.9 11.5 114 18-146 583-708 (714)
116 cd04729 NanE N-acetylmannosami 79.9 25 0.00055 34.7 11.6 70 44-130 127-206 (219)
117 COG0512 PabA Anthranilate/para 79.8 2.6 5.7E-05 42.1 4.6 76 17-95 1-81 (191)
118 PLN02871 UDP-sulfoquinovose:DA 79.3 19 0.00041 39.3 11.5 109 17-146 290-399 (465)
119 PRK06774 para-aminobenzoate sy 79.3 5 0.00011 38.9 6.4 71 20-95 2-79 (191)
120 cd03823 GT1_ExpE7_like This fa 78.4 46 0.00099 32.8 13.0 75 50-146 253-328 (359)
121 TIGR02370 pyl_corrinoid methyl 78.0 11 0.00024 37.2 8.4 68 18-87 85-160 (197)
122 PRK15484 lipopolysaccharide 1, 77.4 43 0.00093 35.6 13.2 108 17-146 224-343 (380)
123 cd03813 GT1_like_3 This family 76.6 26 0.00057 38.5 11.7 112 17-146 324-441 (475)
124 PF02310 B12-binding: B12 bind 76.2 12 0.00026 32.8 7.4 81 26-108 13-100 (121)
125 PRK14098 glycogen synthase; Pr 75.5 25 0.00055 39.3 11.3 111 17-146 336-450 (489)
126 PRK12704 phosphodiesterase; Pr 75.4 6.2 0.00013 44.8 6.6 47 90-149 251-299 (520)
127 PRK09922 UDP-D-galactose:(gluc 75.3 43 0.00094 34.9 12.4 109 17-148 210-325 (359)
128 cd03819 GT1_WavL_like This fam 74.9 56 0.0012 32.9 12.7 107 17-145 216-328 (355)
129 PF01408 GFO_IDH_MocA: Oxidore 74.7 44 0.00095 29.0 10.5 37 97-146 73-111 (120)
130 PF01596 Methyltransf_3: O-met 73.5 15 0.00032 36.8 8.0 60 13-72 66-130 (205)
131 PF00534 Glycos_transf_1: Glyc 71.3 36 0.00077 31.0 9.5 108 17-148 47-159 (172)
132 cd03801 GT1_YqgM_like This fam 71.2 55 0.0012 31.7 11.3 106 17-146 230-340 (374)
133 cd01424 MGS_CPS_II Methylglyox 71.1 36 0.00078 30.0 9.1 68 22-92 7-99 (110)
134 TIGR03449 mycothiol_MshA UDP-N 69.8 61 0.0013 34.0 12.1 106 18-146 253-367 (405)
135 PRK07649 para-aminobenzoate/an 69.6 5.2 0.00011 39.4 3.8 71 20-95 2-79 (195)
136 cd06533 Glyco_transf_WecG_TagA 69.4 33 0.0007 33.1 9.1 74 16-94 45-130 (171)
137 cd04949 GT1_gtfA_like This fam 69.3 43 0.00092 34.6 10.6 66 64-147 279-345 (372)
138 cd04962 GT1_like_5 This family 69.2 55 0.0012 33.3 11.3 105 18-146 228-335 (371)
139 PRK00278 trpC indole-3-glycero 68.9 90 0.0019 32.2 12.7 86 27-130 146-240 (260)
140 TIGR03151 enACPred_II putative 68.5 44 0.00095 35.4 10.6 82 33-130 101-190 (307)
141 PF03602 Cons_hypoth95: Conser 68.4 19 0.00041 35.2 7.4 54 18-71 66-122 (183)
142 cd03114 ArgK-like The function 68.1 13 0.00029 34.9 6.0 42 50-97 80-123 (148)
143 cd03785 GT1_MurG MurG is an N- 67.5 81 0.0017 32.2 12.1 64 64-146 253-323 (350)
144 cd03818 GT1_ExpC_like This fam 67.2 46 0.001 35.1 10.6 108 17-147 243-366 (396)
145 cd05844 GT1_like_7 Glycosyltra 66.8 91 0.002 31.7 12.3 107 17-146 219-335 (367)
146 TIGR02026 BchE magnesium-proto 65.2 59 0.0013 36.5 11.4 105 26-145 21-136 (497)
147 PLN02275 transferase, transfer 65.0 93 0.002 32.9 12.3 104 17-144 261-370 (371)
148 PRK15427 colanic acid biosynth 64.8 1.1E+02 0.0023 33.2 12.9 107 17-146 253-369 (406)
149 PRK06731 flhF flagellar biosyn 64.7 92 0.002 32.6 11.9 106 17-133 103-222 (270)
150 TIGR02149 glgA_Coryne glycogen 64.5 75 0.0016 32.8 11.3 107 17-146 229-351 (388)
151 PRK01231 ppnK inorganic polyph 64.3 61 0.0013 34.2 10.6 103 14-148 1-119 (295)
152 PRK10128 2-keto-3-deoxy-L-rham 64.1 71 0.0015 33.4 11.0 96 31-142 7-110 (267)
153 PF03808 Glyco_tran_WecB: Glyc 64.0 66 0.0014 30.9 10.0 74 16-94 47-132 (172)
154 TIGR00007 phosphoribosylformim 64.0 82 0.0018 31.1 11.0 66 49-129 146-217 (230)
155 cd03804 GT1_wbaZ_like This fam 63.4 39 0.00085 34.6 8.9 102 18-147 222-326 (351)
156 cd04730 NPD_like 2-Nitropropan 62.9 99 0.0021 30.5 11.3 82 33-130 94-185 (236)
157 PRK12724 flagellar biosynthesi 62.7 63 0.0014 36.2 10.8 107 16-134 251-371 (432)
158 PLN03162 golden-2 like transcr 62.4 19 0.00041 39.5 6.5 99 444-550 358-482 (526)
159 cd03799 GT1_amsK_like This is 61.5 1.3E+02 0.0027 30.2 12.0 107 17-146 210-326 (355)
160 cd03816 GT1_ALG1_like This fam 61.5 1.6E+02 0.0034 31.8 13.5 106 17-147 269-381 (415)
161 PRK10742 putative methyltransf 61.4 40 0.00087 35.1 8.5 56 17-75 110-176 (250)
162 PRK10558 alpha-dehydro-beta-de 61.3 78 0.0017 32.8 10.6 97 30-142 7-111 (256)
163 PRK00654 glgA glycogen synthas 60.9 1.3E+02 0.0027 33.2 12.8 113 17-146 311-427 (466)
164 PRK15201 fimbriae regulatory p 60.9 20 0.00043 36.0 5.8 152 18-192 2-166 (198)
165 PRK15490 Vi polysaccharide bio 60.8 1.3E+02 0.0028 35.1 13.1 102 17-142 429-533 (578)
166 cd03811 GT1_WabH_like This fam 60.2 1.4E+02 0.003 28.9 11.7 63 64-145 264-327 (353)
167 cd00564 TMP_TenI Thiamine mono 59.4 83 0.0018 29.4 9.7 68 46-130 101-178 (196)
168 PRK05703 flhF flagellar biosyn 59.3 1.3E+02 0.0028 33.4 12.5 109 16-134 250-369 (424)
169 cd03812 GT1_CapH_like This fam 58.9 1.2E+02 0.0027 30.5 11.5 106 17-147 223-331 (358)
170 PRK00748 1-(5-phosphoribosyl)- 58.8 46 0.001 32.8 8.2 66 49-129 147-219 (233)
171 PF00497 SBP_bac_3: Bacterial 58.7 33 0.00072 31.9 6.8 54 13-71 107-160 (225)
172 cd02065 B12-binding_like B12 b 58.7 42 0.0009 29.4 7.1 62 24-87 10-74 (125)
173 TIGR03239 GarL 2-dehydro-3-deo 58.4 1.1E+02 0.0023 31.6 11.0 93 33-141 3-103 (249)
174 PLN02775 Probable dihydrodipic 58.3 71 0.0015 33.9 9.8 83 17-103 11-119 (286)
175 PRK00811 spermidine synthase; 57.9 1.7E+02 0.0036 30.5 12.4 58 15-75 98-162 (283)
176 TIGR02095 glgA glycogen/starch 57.9 1.2E+02 0.0026 33.1 12.0 112 18-146 321-436 (473)
177 PRK13566 anthranilate synthase 57.7 28 0.0006 41.3 7.4 78 16-96 525-606 (720)
178 PRK00726 murG undecaprenyldiph 57.6 1.8E+02 0.0038 30.2 12.6 64 64-146 253-323 (357)
179 cd03808 GT1_cap1E_like This fa 57.3 1.4E+02 0.0031 29.0 11.3 64 64-146 264-328 (359)
180 PRK03372 ppnK inorganic polyph 57.2 1.2E+02 0.0026 32.4 11.4 104 14-149 2-130 (306)
181 cd03798 GT1_wlbH_like This fam 57.1 1.5E+02 0.0033 28.9 11.5 76 49-147 268-344 (377)
182 PRK06895 putative anthranilate 56.8 14 0.00031 35.7 4.2 31 18-48 2-32 (190)
183 cd03795 GT1_like_4 This family 56.6 2.2E+02 0.0047 28.5 13.4 109 17-147 218-332 (357)
184 PRK05567 inosine 5'-monophosph 56.5 85 0.0019 35.3 10.7 98 16-130 239-360 (486)
185 PRK11889 flhF flagellar biosyn 56.3 1E+02 0.0022 34.7 10.9 109 16-134 268-389 (436)
186 PRK03708 ppnK inorganic polyph 55.7 69 0.0015 33.5 9.2 96 18-148 1-113 (277)
187 PF02254 TrkA_N: TrkA-N domain 55.6 84 0.0018 27.2 8.5 72 18-97 22-98 (116)
188 PLN02274 inosine-5'-monophosph 55.4 88 0.0019 35.6 10.6 97 17-130 260-380 (505)
189 TIGR03061 pip_yhgE_Nterm YhgE/ 55.4 30 0.00066 32.6 6.0 55 15-75 41-105 (164)
190 cd04727 pdxS PdxS is a subunit 55.0 47 0.001 35.3 7.8 68 46-130 118-225 (283)
191 PF02254 TrkA_N: TrkA-N domain 54.9 75 0.0016 27.5 8.0 78 20-106 1-80 (116)
192 TIGR01133 murG undecaprenyldip 54.8 1.9E+02 0.0042 29.4 12.2 64 64-146 251-320 (348)
193 CHL00162 thiG thiamin biosynth 54.7 2.1E+02 0.0046 30.3 12.3 96 34-147 130-240 (267)
194 cd00331 IGPS Indole-3-glycerol 54.6 2.2E+02 0.0048 27.9 12.9 76 38-129 118-200 (217)
195 TIGR00566 trpG_papA glutamine 54.5 16 0.00035 35.6 4.1 71 20-95 2-79 (188)
196 PRK14099 glycogen synthase; Pr 54.5 1.2E+02 0.0026 34.0 11.4 114 17-145 324-442 (485)
197 PF04321 RmlD_sub_bind: RmlD s 54.5 21 0.00045 36.8 5.1 54 18-73 1-61 (286)
198 COG4122 Predicted O-methyltran 54.4 50 0.0011 33.7 7.7 79 14-94 81-164 (219)
199 COG0742 N6-adenine-specific me 54.3 42 0.00092 33.5 7.0 53 18-71 67-122 (187)
200 KOG1562 Spermidine synthase [A 53.8 43 0.00093 36.1 7.2 61 19-82 147-213 (337)
201 PRK08007 para-aminobenzoate sy 53.8 15 0.00032 35.8 3.7 73 20-95 2-79 (187)
202 cd03825 GT1_wcfI_like This fam 53.7 45 0.00097 33.5 7.3 74 18-94 1-82 (365)
203 cd04723 HisA_HisF Phosphoribos 53.5 60 0.0013 32.7 8.1 65 49-129 147-217 (233)
204 cd05212 NAD_bind_m-THF_DH_Cycl 53.4 54 0.0012 31.0 7.3 53 16-75 27-83 (140)
205 TIGR00693 thiE thiamine-phosph 53.1 1E+02 0.0022 29.6 9.3 68 45-129 101-179 (196)
206 PF03060 NMO: Nitronate monoox 53.0 1.1E+02 0.0025 32.4 10.5 81 33-130 128-219 (330)
207 PRK05637 anthranilate synthase 52.8 23 0.00049 35.4 4.9 49 18-69 2-50 (208)
208 cd03806 GT1_ALG11_like This fa 52.8 1.5E+02 0.0033 32.2 11.6 109 17-146 273-391 (419)
209 PRK13609 diacylglycerol glucos 52.5 2.3E+02 0.005 29.7 12.7 105 17-146 230-337 (380)
210 PF05690 ThiG: Thiazole biosyn 52.4 1.2E+02 0.0027 31.6 10.1 111 18-146 94-225 (247)
211 PRK03958 tRNA 2'-O-methylase; 52.2 1.3E+02 0.0028 30.0 9.8 75 19-96 33-111 (176)
212 PLN02316 synthase/transferase 52.1 1.2E+02 0.0027 37.6 11.7 121 17-147 869-998 (1036)
213 PRK06543 nicotinate-nucleotide 51.9 1.8E+02 0.004 30.8 11.6 85 19-108 161-256 (281)
214 cd02068 radical_SAM_B12_BD B12 51.5 1.1E+02 0.0024 27.4 8.8 103 28-145 3-111 (127)
215 PRK12726 flagellar biosynthesi 51.2 1.3E+02 0.0027 33.7 10.6 109 16-134 233-354 (407)
216 PRK01911 ppnK inorganic polyph 50.6 1.4E+02 0.0031 31.6 10.6 100 18-149 1-122 (292)
217 PRK07896 nicotinate-nucleotide 50.3 71 0.0015 33.9 8.3 84 20-108 173-265 (289)
218 TIGR01334 modD putative molybd 50.2 53 0.0011 34.6 7.3 84 20-108 159-254 (277)
219 PRK05458 guanosine 5'-monophos 50.0 2.4E+02 0.0051 30.6 12.3 96 19-130 113-230 (326)
220 cd03802 GT1_AviGT4_like This f 49.8 2.4E+02 0.0052 28.1 11.7 103 18-145 198-306 (335)
221 PRK12723 flagellar biosynthesi 49.5 2.1E+02 0.0045 31.7 12.0 108 16-134 205-324 (388)
222 PRK08385 nicotinate-nucleotide 49.2 1.2E+02 0.0027 32.0 9.8 83 20-108 157-250 (278)
223 PRK13587 1-(5-phosphoribosyl)- 49.1 89 0.0019 31.7 8.6 64 51-129 151-220 (234)
224 PF01729 QRPTase_C: Quinolinat 49.0 53 0.0012 32.0 6.7 84 20-108 53-146 (169)
225 PLN02591 tryptophan synthase 48.3 1.8E+02 0.0039 30.2 10.7 100 20-132 110-220 (250)
226 PRK06978 nicotinate-nucleotide 48.1 1.2E+02 0.0026 32.5 9.5 85 19-108 178-268 (294)
227 CHL00101 trpG anthranilate syn 48.0 21 0.00045 34.8 3.7 48 20-69 2-49 (190)
228 PRK02155 ppnK NAD(+)/NADH kina 47.9 1.6E+02 0.0034 31.1 10.4 99 19-149 7-121 (291)
229 PRK06559 nicotinate-nucleotide 47.7 1.3E+02 0.0029 32.0 9.8 85 19-108 169-260 (290)
230 PRK10423 transcriptional repre 47.5 99 0.0021 31.3 8.7 65 29-96 74-144 (327)
231 PTZ00314 inosine-5'-monophosph 47.4 1.5E+02 0.0032 33.7 10.8 31 88-131 344-374 (495)
232 cd04951 GT1_WbdM_like This fam 46.9 1.9E+02 0.0042 28.9 10.6 104 17-146 219-325 (360)
233 PRK05670 anthranilate synthase 46.8 24 0.00052 34.1 4.0 71 20-95 2-79 (189)
234 TIGR00343 pyridoxal 5'-phospha 46.7 1.3E+02 0.0029 32.1 9.5 57 78-147 184-250 (287)
235 PRK14974 cell division protein 46.7 2.3E+02 0.005 30.6 11.6 55 16-72 167-231 (336)
236 PRK14967 putative methyltransf 46.7 2.2E+02 0.0048 28.0 10.8 48 19-71 61-109 (223)
237 PRK04148 hypothetical protein; 46.6 1.7E+02 0.0038 27.7 9.5 56 16-75 16-71 (134)
238 PRK06843 inosine 5-monophospha 46.4 2.1E+02 0.0046 31.9 11.5 98 16-130 164-285 (404)
239 cd03805 GT1_ALG2_like This fam 46.3 3.5E+02 0.0077 27.9 13.1 106 17-146 245-363 (392)
240 cd06296 PBP1_CatR_like Ligand- 46.1 1E+02 0.0023 29.9 8.3 63 28-96 16-86 (270)
241 TIGR00308 TRM1 tRNA(guanine-26 46.1 4.1E+02 0.0088 29.2 13.5 113 18-151 70-194 (374)
242 cd03817 GT1_UGDG_like This fam 46.1 3E+02 0.0066 27.1 12.5 73 50-146 269-342 (374)
243 PRK10669 putative cation:proto 46.0 1.4E+02 0.003 33.9 10.4 49 19-70 419-467 (558)
244 TIGR00734 hisAF_rel hisA/hisF 45.9 1.1E+02 0.0024 30.8 8.6 67 48-129 141-212 (221)
245 PRK07239 bifunctional uroporph 45.8 2.4E+02 0.0051 30.3 11.6 144 15-182 140-329 (381)
246 TIGR00696 wecB_tagA_cpsF bacte 45.5 1.4E+02 0.003 29.3 8.9 67 16-87 47-121 (177)
247 cd06282 PBP1_GntR_like_2 Ligan 45.4 1.4E+02 0.0031 28.7 9.1 64 28-96 16-87 (266)
248 TIGR02311 HpaI 2,4-dihydroxyhe 44.9 2.3E+02 0.005 29.1 10.9 96 33-144 3-106 (249)
249 PRK09016 quinolinate phosphori 44.7 82 0.0018 33.7 7.7 84 20-108 182-271 (296)
250 PF07830 PP2C_C: Protein serin 44.6 31 0.00067 30.1 3.8 39 522-565 27-65 (81)
251 PRK11840 bifunctional sulfur c 44.6 83 0.0018 34.1 7.8 113 18-147 168-300 (326)
252 cd03807 GT1_WbnK_like This fam 44.4 2.1E+02 0.0046 28.0 10.3 63 64-147 269-332 (365)
253 PRK05848 nicotinate-nucleotide 44.3 84 0.0018 33.0 7.7 92 20-129 155-256 (273)
254 PRK10653 D-ribose transporter 44.3 1.2E+02 0.0026 30.5 8.7 65 28-96 43-115 (295)
255 cd06318 PBP1_ABC_sugar_binding 44.3 1.3E+02 0.0027 29.6 8.6 63 29-96 17-88 (282)
256 TIGR03586 PseI pseudaminic aci 44.2 1.1E+02 0.0024 33.0 8.7 76 28-108 77-154 (327)
257 PLN02589 caffeoyl-CoA O-methyl 43.9 1E+02 0.0022 31.8 8.1 60 13-72 100-165 (247)
258 cd06338 PBP1_ABC_ligand_bindin 43.9 2.4E+02 0.0051 28.9 10.9 76 17-97 141-231 (345)
259 PRK04128 1-(5-phosphoribosyl)- 43.8 1.1E+02 0.0023 31.1 8.2 66 49-129 144-210 (228)
260 cd03800 GT1_Sucrose_synthase T 43.7 3E+02 0.0065 28.2 11.6 75 49-146 292-367 (398)
261 PRK00025 lpxB lipid-A-disaccha 43.6 3E+02 0.0065 28.7 11.8 23 124-146 318-340 (380)
262 PLN02335 anthranilate synthase 43.2 26 0.00057 35.2 3.7 50 18-69 19-68 (222)
263 PF00977 His_biosynth: Histidi 43.2 1.1E+02 0.0024 30.8 8.1 69 47-129 146-219 (229)
264 PLN02781 Probable caffeoyl-CoA 43.0 1.1E+02 0.0024 30.9 8.1 60 14-73 90-154 (234)
265 PRK04457 spermidine synthase; 42.9 3.2E+02 0.007 28.1 11.6 53 17-72 90-145 (262)
266 PRK09522 bifunctional glutamin 42.9 34 0.00074 39.1 4.9 76 17-95 1-84 (531)
267 PRK13789 phosphoribosylamine-- 42.4 2.9E+02 0.0062 30.6 11.8 75 14-92 1-96 (426)
268 cd06292 PBP1_LacI_like_10 Liga 42.4 98 0.0021 30.2 7.5 67 28-96 16-91 (273)
269 COG0673 MviM Predicted dehydro 42.1 4E+02 0.0087 27.3 13.1 106 16-144 2-114 (342)
270 TIGR02470 sucr_synth sucrose s 41.9 4.5E+02 0.0097 31.9 13.9 108 17-146 581-708 (784)
271 COG4262 Predicted spermidine s 41.4 72 0.0016 35.6 6.8 62 12-75 308-377 (508)
272 PRK10188 DNA-binding transcrip 41.2 40 0.00086 34.2 4.7 36 157-192 177-212 (240)
273 cd06273 PBP1_GntR_like_1 This 41.1 1.4E+02 0.0031 28.9 8.5 63 28-96 16-86 (268)
274 PLN02476 O-methyltransferase 41.1 1.1E+02 0.0023 32.4 7.9 60 13-72 139-203 (278)
275 PRK05993 short chain dehydroge 40.7 1.3E+02 0.0028 30.2 8.3 56 17-74 4-59 (277)
276 COG1568 Predicted methyltransf 40.7 25 0.00054 37.6 3.1 56 12-71 172-229 (354)
277 PLN02366 spermidine synthase 40.7 1.3E+02 0.0028 32.0 8.6 59 15-75 113-177 (308)
278 cd03794 GT1_wbuB_like This fam 40.6 3.4E+02 0.0075 26.7 11.1 77 49-146 284-364 (394)
279 cd04722 TIM_phosphate_binding 40.5 2.3E+02 0.0051 25.8 9.3 54 62-129 135-198 (200)
280 cd01541 PBP1_AraR Ligand-bindi 40.2 1.5E+02 0.0032 29.1 8.4 67 28-97 16-92 (273)
281 cd06275 PBP1_PurR Ligand-bindi 39.9 1.5E+02 0.0033 28.7 8.4 66 29-97 17-88 (269)
282 PRK07028 bifunctional hexulose 39.9 5.5E+02 0.012 28.3 13.6 100 31-147 97-212 (430)
283 cd06281 PBP1_LacI_like_5 Ligan 39.9 1.6E+02 0.0034 28.8 8.6 65 28-97 16-88 (269)
284 TIGR00262 trpA tryptophan synt 39.8 3.3E+02 0.0072 28.1 11.1 102 17-131 115-228 (256)
285 TIGR01232 lacD tagatose 1,6-di 39.8 69 0.0015 34.7 6.3 45 88-148 241-287 (325)
286 PRK06106 nicotinate-nucleotide 39.7 1.1E+02 0.0024 32.4 7.7 84 20-108 167-257 (281)
287 CHL00194 ycf39 Ycf39; Provisio 39.6 2E+02 0.0043 29.7 9.6 71 18-95 1-71 (317)
288 PRK07765 para-aminobenzoate sy 39.4 39 0.00084 33.8 4.2 77 18-95 1-83 (214)
289 TIGR02472 sucr_P_syn_N sucrose 39.3 3.7E+02 0.008 29.2 12.0 95 33-146 306-405 (439)
290 PF00389 2-Hacid_dh: D-isomer 39.3 2.2E+02 0.0047 25.6 8.8 96 20-139 1-99 (133)
291 COG1748 LYS9 Saccharopine dehy 39.3 1.4E+02 0.0031 33.0 8.8 86 17-108 1-90 (389)
292 PF03102 NeuB: NeuB family; I 39.0 1.1E+02 0.0024 31.6 7.5 75 29-108 57-133 (241)
293 TIGR03704 PrmC_rel_meth putati 38.7 3E+02 0.0065 28.1 10.6 52 17-71 110-161 (251)
294 PF00532 Peripla_BP_1: Peripla 38.7 1.2E+02 0.0026 31.0 7.8 65 29-97 19-88 (279)
295 PF01564 Spermine_synth: Sperm 38.7 81 0.0018 32.2 6.5 60 14-75 97-162 (246)
296 COG1091 RfbD dTDP-4-dehydrorha 38.6 59 0.0013 34.5 5.5 55 18-75 1-62 (281)
297 PRK13143 hisH imidazole glycer 38.6 73 0.0016 31.2 6.0 44 18-69 1-44 (200)
298 PLN02716 nicotinate-nucleotide 38.6 1.7E+02 0.0037 31.5 9.0 87 20-108 173-281 (308)
299 cd06284 PBP1_LacI_like_6 Ligan 38.5 1.7E+02 0.0037 28.2 8.5 62 29-96 17-85 (267)
300 cd06322 PBP1_ABC_sugar_binding 38.4 1.5E+02 0.0033 28.8 8.2 63 29-95 17-87 (267)
301 TIGR03590 PseG pseudaminic aci 38.4 2.2E+02 0.0049 29.2 9.7 73 17-98 31-113 (279)
302 cd00381 IMPDH IMPDH: The catal 38.3 3.6E+02 0.0078 28.8 11.5 97 16-129 105-225 (325)
303 cd01948 EAL EAL domain. This d 38.2 1E+02 0.0023 29.5 6.9 88 31-134 135-238 (240)
304 TIGR00095 RNA methyltransferas 38.2 1.1E+02 0.0024 29.9 7.1 55 19-73 74-131 (189)
305 cd04732 HisA HisA. Phosphorib 38.2 3.9E+02 0.0085 26.2 11.1 66 49-129 147-218 (234)
306 cd06271 PBP1_AglR_RafR_like Li 38.2 1.8E+02 0.0039 28.1 8.6 62 29-96 21-90 (268)
307 PRK01033 imidazole glycerol ph 38.1 1.6E+02 0.0034 30.2 8.5 66 49-129 153-225 (258)
308 PF09936 Methyltrn_RNA_4: SAM- 38.0 2.3E+02 0.005 28.5 9.2 97 19-134 44-162 (185)
309 KOG2236 Uncharacterized conser 37.9 89 0.0019 35.4 6.9 114 374-505 367-483 (483)
310 cd04724 Tryptophan_synthase_al 37.8 1.2E+02 0.0027 30.7 7.6 51 79-142 64-123 (242)
311 cd00532 MGS-like MGS-like doma 37.7 2.2E+02 0.0047 25.4 8.3 26 22-47 6-31 (112)
312 TIGR00064 ftsY signal recognit 37.4 4.2E+02 0.0091 27.5 11.5 55 16-72 99-163 (272)
313 COG5012 Predicted cobalamin bi 37.3 55 0.0012 33.8 4.9 75 20-96 109-193 (227)
314 cd03822 GT1_ecORF704_like This 37.1 3E+02 0.0064 27.4 10.1 74 50-146 258-333 (366)
315 cd06295 PBP1_CelR Ligand bindi 37.1 1.7E+02 0.0038 28.6 8.4 63 28-96 27-95 (275)
316 cd04726 KGPDC_HPS 3-Keto-L-gul 36.8 3.9E+02 0.0084 25.6 11.7 97 17-130 77-186 (202)
317 PRK04180 pyridoxal biosynthesi 36.8 2.2E+02 0.0049 30.5 9.4 57 78-147 190-256 (293)
318 TIGR02634 xylF D-xylose ABC tr 36.7 1.2E+02 0.0025 31.0 7.3 65 28-96 15-87 (302)
319 KOG1924 RhoA GTPase effector D 36.7 3.7E+02 0.008 32.8 11.8 16 427-442 528-543 (1102)
320 PF04131 NanE: Putative N-acet 36.6 3.5E+02 0.0076 27.4 10.2 95 18-130 65-173 (192)
321 PLN00142 sucrose synthase 36.6 6.6E+02 0.014 30.7 14.3 94 31-146 629-731 (815)
322 PF13407 Peripla_BP_4: Peripla 36.6 1.2E+02 0.0027 29.4 7.2 65 29-97 16-89 (257)
323 cd04946 GT1_AmsK_like This fam 36.5 5.7E+02 0.012 27.5 13.0 107 18-146 264-376 (407)
324 PF01285 TEA: TEA/ATTS domain 36.5 36 0.00078 38.1 3.8 52 329-381 46-112 (431)
325 PF00196 GerE: Bacterial regul 36.5 20 0.00044 28.1 1.4 34 158-191 2-35 (58)
326 PRK11359 cyclic-di-GMP phospho 36.4 3.1E+02 0.0066 31.7 11.4 97 30-142 680-792 (799)
327 cd00167 SANT 'SWI3, ADA2, N-Co 36.3 1.1E+02 0.0023 21.5 5.1 44 334-381 1-44 (45)
328 PRK09288 purT phosphoribosylgl 36.2 5.6E+02 0.012 27.3 13.2 38 13-51 8-45 (395)
329 cd03796 GT1_PIG-A_like This fa 36.1 5E+02 0.011 27.5 12.2 105 17-147 224-333 (398)
330 COG0157 NadC Nicotinate-nucleo 36.1 2E+02 0.0044 30.6 8.9 85 19-108 160-253 (280)
331 TIGR03765 ICE_PFL_4695 integra 36.1 2E+02 0.0044 26.4 7.8 74 14-96 21-101 (105)
332 PRK02649 ppnK inorganic polyph 36.0 2.6E+02 0.0056 29.8 9.9 100 18-149 2-126 (305)
333 cd06309 PBP1_YtfQ_like Peripla 35.7 1.3E+02 0.0029 29.4 7.3 65 28-96 16-88 (273)
334 TIGR03569 NeuB_NnaB N-acetylne 35.5 3.3E+02 0.0071 29.5 10.6 76 28-108 76-153 (329)
335 cd06279 PBP1_LacI_like_3 Ligan 35.2 1.6E+02 0.0036 29.2 8.0 63 28-96 21-87 (283)
336 TIGR01815 TrpE-clade3 anthrani 35.2 1.1E+02 0.0024 36.5 7.6 77 16-95 515-595 (717)
337 PRK03692 putative UDP-N-acetyl 35.2 2.5E+02 0.0055 28.9 9.4 73 16-93 104-187 (243)
338 PRK03659 glutathione-regulated 35.1 2.4E+02 0.0052 32.6 10.2 49 19-70 402-450 (601)
339 cd03814 GT1_like_2 This family 35.1 4.6E+02 0.0099 25.9 11.5 75 49-146 256-331 (364)
340 TIGR01037 pyrD_sub1_fam dihydr 34.9 4.1E+02 0.009 27.5 11.1 51 81-144 224-283 (300)
341 PRK06182 short chain dehydroge 34.7 1.9E+02 0.0041 28.8 8.3 75 17-95 3-81 (273)
342 PRK07695 transcriptional regul 34.7 4.4E+02 0.0095 25.6 11.6 66 46-128 101-175 (201)
343 cd00452 KDPG_aldolase KDPG and 34.7 3.4E+02 0.0075 26.3 9.9 66 45-130 102-171 (190)
344 PRK13111 trpA tryptophan synth 34.7 1.2E+02 0.0025 31.6 6.9 59 79-144 76-138 (258)
345 PLN02823 spermine synthase 34.5 1.1E+02 0.0024 33.1 6.9 55 17-74 127-187 (336)
346 PRK04302 triosephosphate isome 34.5 4.6E+02 0.0099 26.1 10.9 78 37-130 110-202 (223)
347 cd05013 SIS_RpiR RpiR-like pro 34.4 3.1E+02 0.0067 23.8 9.6 80 19-100 15-99 (139)
348 PF13659 Methyltransf_26: Meth 34.2 1.2E+02 0.0027 25.9 6.1 56 17-74 23-81 (117)
349 PLN02949 transferase, transfer 34.1 2.6E+02 0.0057 31.2 10.0 109 17-146 303-421 (463)
350 cd01575 PBP1_GntR Ligand-bindi 33.8 1.8E+02 0.0038 28.1 7.7 63 28-96 16-86 (268)
351 TIGR00959 ffh signal recogniti 33.8 5.1E+02 0.011 29.1 12.1 55 16-72 127-191 (428)
352 PRK12826 3-ketoacyl-(acyl-carr 33.7 2E+02 0.0042 27.7 8.0 79 16-96 5-91 (251)
353 cd05568 PTS_IIB_bgl_like PTS_I 33.4 2.7E+02 0.0057 22.7 9.1 71 21-105 5-77 (85)
354 PRK05234 mgsA methylglyoxal sy 33.3 2.1E+02 0.0046 27.1 7.9 39 17-55 4-46 (142)
355 cd06267 PBP1_LacI_sugar_bindin 33.0 3.4E+02 0.0074 25.7 9.5 63 29-97 17-87 (264)
356 PRK14722 flhF flagellar biosyn 33.0 2.6E+02 0.0056 30.8 9.5 89 18-108 168-267 (374)
357 TIGR02082 metH 5-methyltetrahy 33.0 2.2E+02 0.0047 36.0 9.9 77 18-96 733-821 (1178)
358 cd06301 PBP1_rhizopine_binding 33.0 2.4E+02 0.0052 27.4 8.6 64 29-96 17-89 (272)
359 PRK02645 ppnK inorganic polyph 33.0 3E+02 0.0065 29.2 9.8 75 17-96 3-89 (305)
360 cd01538 PBP1_ABC_xylose_bindin 32.9 2.2E+02 0.0048 28.4 8.5 64 29-96 17-88 (288)
361 PRK14569 D-alanyl-alanine synt 32.8 3.7E+02 0.008 27.9 10.3 97 16-118 2-108 (296)
362 cd06285 PBP1_LacI_like_7 Ligan 32.8 2E+02 0.0044 27.9 8.0 63 28-96 16-86 (265)
363 PRK09526 lacI lac repressor; R 32.8 1.9E+02 0.004 29.6 8.1 65 28-96 80-152 (342)
364 COG1609 PurR Transcriptional r 32.7 1.7E+02 0.0037 30.9 8.0 67 27-97 74-146 (333)
365 cd03313 enolase Enolase: Enola 32.7 4.1E+02 0.0089 29.3 11.1 105 24-142 210-347 (408)
366 PF06283 ThuA: Trehalose utili 32.7 1.2E+02 0.0026 29.8 6.5 52 19-74 1-63 (217)
367 PRK04539 ppnK inorganic polyph 32.7 4E+02 0.0086 28.3 10.6 100 17-148 5-125 (296)
368 cd06298 PBP1_CcpA_like Ligand- 32.6 1.9E+02 0.004 28.0 7.7 62 29-96 17-86 (268)
369 cd01542 PBP1_TreR_like Ligand- 32.5 2.1E+02 0.0046 27.6 8.0 63 28-96 16-86 (259)
370 cd06293 PBP1_LacI_like_11 Liga 32.5 2.3E+02 0.0049 27.7 8.3 64 28-96 16-86 (269)
371 cd06319 PBP1_ABC_sugar_binding 32.5 2.3E+02 0.0049 27.7 8.3 63 29-95 17-87 (277)
372 cd06305 PBP1_methylthioribose_ 32.4 1.8E+02 0.004 28.2 7.7 65 29-97 17-89 (273)
373 cd08181 PPD-like 1,3-propanedi 32.3 2.1E+02 0.0046 30.6 8.7 50 18-69 26-89 (357)
374 PRK13719 conjugal transfer tra 32.3 29 0.00062 35.5 2.0 36 157-192 141-176 (217)
375 PRK08857 para-aminobenzoate sy 32.2 50 0.0011 32.2 3.6 70 20-95 2-79 (193)
376 cd06313 PBP1_ABC_sugar_binding 32.2 2E+02 0.0043 28.5 8.0 64 29-96 17-88 (272)
377 KOG3040 Predicted sugar phosph 32.2 45 0.00097 34.5 3.3 64 17-81 39-106 (262)
378 PRK14723 flhF flagellar biosyn 32.2 2.9E+02 0.0062 33.4 10.3 110 18-134 216-335 (767)
379 TIGR02130 dapB_plant dihydrodi 32.0 1.6E+02 0.0035 31.2 7.5 38 62-101 67-106 (275)
380 cd05014 SIS_Kpsf KpsF-like pro 32.0 1.6E+02 0.0034 25.9 6.5 74 26-101 11-87 (128)
381 cd01574 PBP1_LacI Ligand-bindi 32.0 2.4E+02 0.0051 27.3 8.3 65 27-96 15-87 (264)
382 PRK10481 hypothetical protein; 32.0 2.4E+02 0.0053 28.9 8.5 75 16-93 128-211 (224)
383 PRK01395 V-type ATP synthase s 31.8 2E+02 0.0043 26.0 7.1 75 16-97 2-79 (104)
384 PRK03378 ppnK inorganic polyph 31.7 3.7E+02 0.008 28.5 10.1 100 17-148 5-120 (292)
385 PRK13125 trpA tryptophan synth 31.7 4.9E+02 0.011 26.4 10.8 87 28-131 116-215 (244)
386 PF07652 Flavi_DEAD: Flaviviru 31.7 1.2E+02 0.0025 29.5 5.8 82 16-98 32-136 (148)
387 cd08176 LPO Lactadehyde:propan 31.6 2.6E+02 0.0056 30.2 9.2 50 18-69 29-91 (377)
388 cd03791 GT1_Glycogen_synthase_ 31.6 4.3E+02 0.0093 28.6 11.0 112 18-146 326-441 (476)
389 PF02581 TMP-TENI: Thiamine mo 31.6 3E+02 0.0065 26.4 8.8 80 33-129 88-176 (180)
390 PRK10703 DNA-binding transcrip 31.6 1.9E+02 0.0041 29.6 7.9 65 29-96 77-147 (341)
391 cd08170 GlyDH Glycerol dehydro 31.5 2.3E+02 0.0049 30.1 8.7 73 17-95 22-108 (351)
392 KOG0389 SNF2 family DNA-depend 31.3 1.6E+02 0.0035 35.7 7.9 117 2-121 454-587 (941)
393 PLN02591 tryptophan synthase 31.2 1.5E+02 0.0032 30.8 7.0 60 78-144 65-127 (250)
394 cd06354 PBP1_BmpA_PnrA_like Pe 31.0 1.6E+02 0.0034 29.4 7.0 65 29-96 20-89 (265)
395 cd06289 PBP1_MalI_like Ligand- 31.0 2.9E+02 0.0062 26.6 8.7 63 29-96 17-87 (268)
396 TIGR01425 SRP54_euk signal rec 30.9 3.3E+02 0.0072 30.6 10.1 54 17-72 128-191 (429)
397 TIGR01675 plant-AP plant acid 30.8 75 0.0016 32.6 4.7 59 3-72 24-85 (229)
398 cd06299 PBP1_LacI_like_13 Liga 30.8 1.5E+02 0.0033 28.6 6.8 64 28-97 16-87 (265)
399 cd06297 PBP1_LacI_like_12 Liga 30.8 2.3E+02 0.0049 27.9 8.1 62 29-96 17-86 (269)
400 cd01537 PBP1_Repressors_Sugar_ 30.7 3.2E+02 0.007 25.7 8.9 66 28-98 16-89 (264)
401 PRK02290 3-dehydroquinate synt 30.7 3.5E+02 0.0076 29.7 9.9 69 64-144 89-158 (344)
402 PRK13146 hisH imidazole glycer 30.7 1.1E+02 0.0024 30.4 5.8 45 17-69 1-47 (209)
403 smart00052 EAL Putative diguan 30.7 2.1E+02 0.0045 27.5 7.6 87 32-134 137-239 (241)
404 TIGR01302 IMP_dehydrog inosine 30.6 4E+02 0.0087 29.7 10.7 100 16-131 235-357 (450)
405 KOG1601 GATA-4/5/6 transcripti 30.6 5.7 0.00012 38.6 -3.2 109 14-139 13-131 (340)
406 smart00717 SANT SANT SWI3, AD 30.5 1.5E+02 0.0034 20.9 5.2 44 333-380 2-45 (49)
407 PRK10355 xylF D-xylose transpo 30.5 2.2E+02 0.0047 29.8 8.2 65 28-96 42-114 (330)
408 cd06272 PBP1_hexuronate_repres 30.5 2.4E+02 0.0053 27.3 8.1 62 29-96 17-82 (261)
409 PRK13608 diacylglycerol glucos 30.4 6E+02 0.013 27.2 11.7 61 64-146 274-337 (391)
410 PRK05693 short chain dehydroge 30.3 2.5E+02 0.0055 27.9 8.4 75 18-96 2-80 (274)
411 cd06346 PBP1_ABC_ligand_bindin 30.2 6E+02 0.013 25.8 11.8 65 30-99 154-229 (312)
412 PF11072 DUF2859: Protein of u 30.2 2.6E+02 0.0056 27.0 7.9 73 14-95 59-138 (142)
413 PRK04161 tagatose 1,6-diphosph 30.2 1.1E+02 0.0023 33.3 5.9 45 88-148 242-288 (329)
414 cd08179 NADPH_BDH NADPH-depend 30.1 1.5E+02 0.0032 32.0 7.0 50 18-69 24-87 (375)
415 TIGR01761 thiaz-red thiazoliny 30.1 6.2E+02 0.013 27.5 11.7 105 16-146 2-113 (343)
416 PF01959 DHQS: 3-dehydroquinat 30.0 2.1E+02 0.0046 31.4 8.1 70 64-145 97-168 (354)
417 PRK14114 1-(5-phosphoribosyl)- 29.9 2.4E+02 0.0053 28.9 8.3 59 49-108 145-208 (241)
418 cd00578 L-fuc_L-ara-isomerases 29.8 7.4E+02 0.016 27.4 12.6 68 27-98 22-98 (452)
419 PLN02605 monogalactosyldiacylg 29.7 5.1E+02 0.011 27.5 11.0 61 64-146 283-346 (382)
420 cd01743 GATase1_Anthranilate_S 29.6 1.1E+02 0.0024 29.2 5.5 48 20-69 1-48 (184)
421 TIGR01579 MiaB-like-C MiaB-lik 29.6 2.9E+02 0.0063 30.1 9.3 90 26-143 9-106 (414)
422 COG2022 ThiG Uncharacterized e 29.5 3.3E+02 0.0072 28.6 9.0 96 18-130 101-211 (262)
423 PRK14024 phosphoribosyl isomer 29.5 3.1E+02 0.0068 27.7 8.9 78 50-139 148-237 (241)
424 cd06323 PBP1_ribose_binding Pe 29.4 2.5E+02 0.0055 27.0 8.0 65 29-97 17-89 (268)
425 PRK07107 inosine 5-monophospha 29.3 2.3E+02 0.0051 32.3 8.7 98 16-130 253-381 (502)
426 PF07279 DUF1442: Protein of u 29.3 3.2E+02 0.0068 28.2 8.7 62 19-87 71-137 (218)
427 PRK12399 tagatose 1,6-diphosph 29.3 1.5E+02 0.0033 32.1 6.8 45 88-148 240-286 (324)
428 PRK11036 putative S-adenosyl-L 29.3 4.7E+02 0.01 26.3 10.1 67 17-86 66-135 (255)
429 PRK07428 nicotinate-nucleotide 29.2 2.3E+02 0.0049 30.1 8.1 92 19-129 168-270 (288)
430 PRK06096 molybdenum transport 29.1 2.3E+02 0.0049 30.1 8.0 84 20-108 160-255 (284)
431 PRK15179 Vi polysaccharide bio 28.9 5.5E+02 0.012 30.6 11.9 105 18-146 549-658 (694)
432 cd01545 PBP1_SalR Ligand-bindi 28.8 2.1E+02 0.0046 27.6 7.4 65 28-97 16-89 (270)
433 PRK01372 ddl D-alanine--D-alan 28.8 1.1E+02 0.0024 31.3 5.6 52 18-71 5-64 (304)
434 TIGR01306 GMP_reduct_2 guanosi 28.8 7.8E+02 0.017 26.7 12.4 96 18-130 109-227 (321)
435 cd06314 PBP1_tmGBP Periplasmic 28.7 1.9E+02 0.0041 28.4 7.1 64 29-96 16-87 (271)
436 cd06342 PBP1_ABC_LIVBP_like Ty 28.7 4.8E+02 0.01 26.3 10.2 64 19-87 137-211 (334)
437 PRK02083 imidazole glycerol ph 28.7 5E+02 0.011 26.3 10.2 77 49-139 154-242 (253)
438 TIGR02918 accessory Sec system 28.6 6.1E+02 0.013 28.7 11.8 105 17-145 350-465 (500)
439 PRK10060 RNase II stability mo 28.6 4.9E+02 0.011 30.2 11.4 98 28-141 541-654 (663)
440 cd06294 PBP1_ycjW_transcriptio 28.5 2.7E+02 0.0058 26.9 8.0 63 28-96 21-91 (270)
441 PRK15128 23S rRNA m(5)C1962 me 28.4 1.8E+02 0.004 32.0 7.5 54 18-71 244-301 (396)
442 cd01147 HemV-2 Metal binding p 28.4 1.5E+02 0.0033 29.2 6.4 46 62-108 73-118 (262)
443 cd01540 PBP1_arabinose_binding 28.0 2.7E+02 0.0058 27.5 8.0 64 29-96 17-87 (289)
444 TIGR02417 fruct_sucro_rep D-fr 28.0 2.8E+02 0.0061 28.2 8.4 63 29-96 78-148 (327)
445 COG0134 TrpC Indole-3-glycerol 28.0 3.3E+02 0.0072 28.6 8.8 82 30-130 145-236 (254)
446 PRK09490 metH B12-dependent me 27.8 3.4E+02 0.0073 34.6 10.3 77 18-96 752-840 (1229)
447 COG0421 SpeE Spermidine syntha 27.8 1.4E+02 0.003 31.6 6.2 55 17-74 100-160 (282)
448 cd01536 PBP1_ABC_sugar_binding 27.8 3.2E+02 0.0069 26.1 8.3 65 29-97 17-89 (267)
449 TIGR00735 hisF imidazoleglycer 27.7 5.2E+02 0.011 26.3 10.2 57 50-108 157-219 (254)
450 cd03422 YedF YedF is a bacteri 27.6 1.3E+02 0.0028 24.7 4.8 39 10-48 19-57 (69)
451 cd06310 PBP1_ABC_sugar_binding 27.6 2.8E+02 0.006 27.0 8.0 65 29-97 17-91 (273)
452 PF02882 THF_DHG_CYH_C: Tetrah 27.5 91 0.002 30.2 4.4 57 15-75 34-91 (160)
453 cd08551 Fe-ADH iron-containing 27.4 2.9E+02 0.0062 29.6 8.6 50 18-69 24-86 (370)
454 cd06283 PBP1_RegR_EndR_KdgR_li 27.4 3.5E+02 0.0075 26.1 8.6 63 28-96 16-86 (267)
455 PRK05653 fabG 3-ketoacyl-(acyl 27.4 3.7E+02 0.008 25.6 8.7 58 17-74 5-66 (246)
456 cd06320 PBP1_allose_binding Pe 27.2 2.5E+02 0.0053 27.5 7.6 64 29-96 17-90 (275)
457 cd06290 PBP1_LacI_like_9 Ligan 27.2 3.2E+02 0.0069 26.5 8.3 62 29-96 17-85 (265)
458 PRK01581 speE spermidine synth 27.2 6E+02 0.013 28.2 11.0 57 15-74 172-237 (374)
459 PRK00955 hypothetical protein; 27.1 4.3E+02 0.0094 31.2 10.5 42 24-69 26-71 (620)
460 PRK11303 DNA-binding transcrip 27.1 3.1E+02 0.0068 27.7 8.6 62 30-96 80-149 (328)
461 PRK09186 flagellin modificatio 27.1 2.9E+02 0.0062 26.9 8.0 80 15-96 2-91 (256)
462 cd06270 PBP1_GalS_like Ligand 27.1 3E+02 0.0065 26.8 8.1 63 28-96 16-86 (268)
463 KOG0781 Signal recognition par 26.9 1.5E+02 0.0032 34.1 6.5 58 16-75 405-480 (587)
464 cd01916 ACS_1 Acetyl-CoA synth 26.9 7.7E+02 0.017 29.8 12.5 114 16-146 199-343 (731)
465 PRK07764 DNA polymerase III su 26.9 1.6E+02 0.0034 35.7 7.2 69 62-146 119-193 (824)
466 COG0313 Predicted methyltransf 26.9 2.6E+02 0.0057 29.7 7.9 82 16-99 29-117 (275)
467 cd00331 IGPS Indole-3-glycerol 26.9 5.6E+02 0.012 25.1 10.0 79 49-143 32-116 (217)
468 PRK01185 ppnK inorganic polyph 26.8 3.7E+02 0.0081 28.2 9.1 96 18-149 1-107 (271)
469 cd06315 PBP1_ABC_sugar_binding 26.8 2.2E+02 0.0047 28.4 7.2 63 29-96 18-89 (280)
470 PRK06849 hypothetical protein; 26.8 2.9E+02 0.0063 29.6 8.6 42 14-55 1-42 (389)
471 cd04731 HisF The cyclase subun 26.7 3E+02 0.0064 27.5 8.1 68 47-129 26-99 (243)
472 TIGR01361 DAHP_synth_Bsub phos 26.7 4.3E+02 0.0093 27.4 9.5 81 51-146 149-259 (260)
473 PRK00941 acetyl-CoA decarbonyl 26.6 6.3E+02 0.014 30.7 11.8 118 16-149 236-385 (781)
474 PLN02939 transferase, transfer 26.6 4.6E+02 0.0099 32.7 10.8 116 17-146 808-930 (977)
475 cd08171 GlyDH-like2 Glycerol d 26.4 1.8E+02 0.004 30.9 6.9 72 18-95 23-109 (345)
476 PRK13586 1-(5-phosphoribosyl)- 26.4 3.2E+02 0.0068 27.9 8.3 66 49-129 147-217 (232)
477 cd06300 PBP1_ABC_sugar_binding 26.3 3E+02 0.0064 26.9 8.0 63 29-96 17-93 (272)
478 COG2771 CsgD DNA-binding HTH d 26.3 43 0.00092 25.9 1.6 35 158-192 3-37 (65)
479 PF05768 DUF836: Glutaredoxin- 26.3 2.3E+02 0.0049 23.7 6.1 66 49-142 15-81 (81)
480 cd06278 PBP1_LacI_like_2 Ligan 26.3 3.1E+02 0.0067 26.4 8.0 62 29-96 17-85 (266)
481 PRK06101 short chain dehydroge 26.2 2.8E+02 0.0061 27.0 7.7 68 18-87 2-69 (240)
482 cd04731 HisF The cyclase subun 26.1 3.4E+02 0.0074 27.1 8.5 65 50-129 151-222 (243)
483 COG0118 HisH Glutamine amidotr 26.0 1.1E+02 0.0024 31.1 4.8 38 17-54 1-38 (204)
484 PRK13170 hisH imidazole glycer 26.0 1.6E+02 0.0035 28.9 5.9 44 18-69 1-44 (196)
485 TIGR00236 wecB UDP-N-acetylglu 25.9 7.7E+02 0.017 25.7 12.8 47 82-146 286-333 (365)
486 PF14097 SpoVAE: Stage V sporu 25.9 2.5E+02 0.0055 28.1 7.1 78 20-97 3-94 (180)
487 cd06324 PBP1_ABC_sugar_binding 25.9 3.2E+02 0.0069 27.7 8.3 64 29-97 18-91 (305)
488 PF10672 Methyltrans_SAM: S-ad 25.8 2.7E+02 0.0058 29.6 7.9 53 18-71 147-203 (286)
489 PF00218 IGPS: Indole-3-glycer 25.7 4.1E+02 0.0089 27.7 9.1 85 30-130 147-238 (254)
490 TIGR01096 3A0103s03R lysine-ar 25.7 1.8E+02 0.0039 28.2 6.2 55 12-71 127-181 (250)
491 PRK13111 trpA tryptophan synth 25.5 4.7E+02 0.01 27.2 9.5 96 20-131 121-229 (258)
492 cd01568 QPRTase_NadC Quinolina 25.5 2.2E+02 0.0047 29.6 7.1 92 19-129 153-254 (269)
493 cd06389 PBP1_iGluR_AMPA_GluR2 25.3 3.8E+02 0.0082 28.6 9.1 64 19-87 120-197 (370)
494 cd02809 alpha_hydroxyacid_oxid 25.3 7.8E+02 0.017 25.7 11.2 68 46-130 179-256 (299)
495 PRK13397 3-deoxy-7-phosphohept 25.2 2.2E+02 0.0049 29.7 7.0 64 51-129 139-218 (250)
496 PRK14607 bifunctional glutamin 25.1 87 0.0019 35.7 4.4 75 19-95 1-80 (534)
497 PRK12727 flagellar biosynthesi 25.0 4.9E+02 0.011 30.4 10.2 55 17-72 380-437 (559)
498 TIGR01305 GMP_reduct_1 guanosi 24.8 8.9E+02 0.019 26.7 11.6 97 17-129 121-240 (343)
499 PRK05458 guanosine 5'-monophos 24.7 1.7E+02 0.0036 31.7 6.2 63 51-128 100-166 (326)
500 PRK06463 fabG 3-ketoacyl-(acyl 24.7 4.3E+02 0.0093 25.8 8.8 76 16-95 6-86 (255)
No 1
>PLN03162 golden-2 like transcription factor; Provisional
Probab=100.00 E-value=7.4e-70 Score=557.44 Aligned_cols=238 Identities=44% Similarity=0.751 Sum_probs=185.5
Q ss_pred cccCCCCceecCHHHHHHHHHHHHHhCCCCCCCHHHHhhhCCCCCCHHHHHHhhhhhhhhhcccCCccc-ccCChhhhhh
Q 008254 325 KANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKED-DRKWPHARDQ 403 (572)
Q Consensus 325 ~~~~kk~r~~Wt~eLh~~Fv~av~~lG~~~a~Pk~il~lM~v~glt~~~v~SHLQkyr~~~~~~~~~~~-~~~~~~~r~~ 403 (572)
...+||+||+||+|||++||+||++||+++||||+||++|||+||||+||||||||||+++++++.++. ..+|+++|..
T Consensus 230 ~~g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~rEaEa~swt~kr~~ 309 (526)
T PLN03162 230 APGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAREAEAASWTHRRAY 309 (526)
T ss_pred CCCCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccchhhhhccchhhhhh
Confidence 356899999999999999999999999999999999999999999999999999999999999999988 5899988874
Q ss_pred hhh-----ccCCC----CCCcCCCCC-------------CCCCCCCCCCCCcccCCCCCCCCcccccCCCC---CCCCCC
Q 008254 404 MLR-----NYYPH----KPIMAFPPY-------------HSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPG---YPPWQQ 458 (572)
Q Consensus 404 ~~~-----~~~~~----~p~~~~~~~-------------~~~h~~~~~~~~~~~g~~~~~~~~~~~w~~~~---~~~~~~ 458 (572)
... ++... .| ++||+. .+.|+.|...++||||||+++++.||||+++. .++|++
T Consensus 310 ~~~P~~rs~~~~g~p~~~p-igfP~~~P~P~~~~~~~P~~~~~Hhpf~rPLhVWGhPtvd~s~v~mWp~h~~~~p~pW~~ 388 (526)
T PLN03162 310 TQAPWPRSSRRDGLPYLVP-IHTPHIQPRPSMAMAMQPQLQTPHHPISTPLKVWGYPTVDHSNVHMWQQPAVATPSYWQA 388 (526)
T ss_pred ccCCcccCCCCCCCccccc-cCCCCCCCCCCccCCCCCCcccccccccccceeccCCCCCCcccccccccccCCCCCCCC
Confidence 431 11111 23 555532 12244344457799999999999999999743 467999
Q ss_pred CC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCC---CCCC--------------------CCC
Q 008254 459 AE--SWNWKPYPGMPADAWGCPVMPLPNGPYSSF------PQGASGYHNS---GVDD--------------------NSY 507 (572)
Q Consensus 459 ~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~---~~~~--------------------~~~ 507 (572)
.+ ||| |||.+..|.. |+||+|.|...+... |.-.|+|..+ |+.| .+.
T Consensus 389 ~Dp~fW~-h~~~~~~a~~-gtpc~p~pm~Rfp~ppv~~G~p~~~P~~p~~~~yy~~d~~a~~~~~~~~~~~~~~~~~~~~ 466 (526)
T PLN03162 389 ADGSYWQ-HPATGYDAFS-ARACYPHPMQRVPLGTTHAGLPIMAPGFPDESCYYGDDMLAASMYLCNQSYDSEIGRAAGV 466 (526)
T ss_pred CCcchhh-cccccCcccc-CCcccCchhhhCCCCCCCCCCccccCCCCchhhcccccchhhcccccccccccccccccch
Confidence 76 776 4898765433 999999876322111 2212223221 1111 112
Q ss_pred CCCCCcccCCCchHHHHHHHHHHhhCCCccCCCCCCCCchhHHHHHHHHcCCCCCCCC
Q 008254 508 AMPQNSVDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPPR 565 (572)
Q Consensus 508 ~~~~~~~~~~p~~e~~d~~i~~~~~~pwlplplglkpps~~~v~~el~~qgi~~~pp~ 565 (572)
...++++++|||||+|||||||||+||||||||||||||+||||+|||||||++|||+
T Consensus 467 ~~~~~~~~~hpSkEsiDAAIgdvLskPWlPlPLGLKpPSldsVm~ELqRQGi~~vpp~ 524 (526)
T PLN03162 467 AACSKPIETHLSKEVLDAAIGEALANPWTPPPLGLKPPSMEGVIAELQRQGINTVPPS 524 (526)
T ss_pred hhcccccccCccHHHHHHHHHHHhhCCCCCCCcCCCCccHHHHHHHHHHcccCCCCCC
Confidence 2245899999999999999999999999999999999999999999999999999996
No 2
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.89 E-value=2.2e-22 Score=194.54 Aligned_cols=161 Identities=22% Similarity=0.308 Sum_probs=143.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCc
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlP 90 (572)
+...-|.|||||..+++.|..+|++.||.|.++.++++.|..... .++.|+|+|++||+ ++|.+|..++. .+|
T Consensus 2 ~~~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~--~~pGclllDvrMPg-~sGlelq~~L~~~~~~~P 78 (202)
T COG4566 2 PREPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPL--DRPGCLLLDVRMPG-MSGLELQDRLAERGIRLP 78 (202)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccC--CCCCeEEEecCCCC-CchHHHHHHHHhcCCCCC
Confidence 445679999999999999999999999999999999999999766 78999999999999 99999999996 799
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCC--------CcccCCCCh
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG--------SALSDSLKP 162 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~--------~~~~~sLt~ 162 (572)
|||+|+++|....++|++ .||.|||.||++.++|+++++.++++...... ..++..||+
T Consensus 79 VIfiTGhgDIpmaV~AmK-------------~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~~~~~~~~~~~~l~tLT~ 145 (202)
T COG4566 79 VIFLTGHGDIPMAVQAMK-------------AGAVDFLEKPFSEQDLLDAVERALARDASRRAEADRQAAIRARLATLTP 145 (202)
T ss_pred EEEEeCCCChHHHHHHHH-------------cchhhHHhCCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCH
Confidence 999999999999999999 99999999999999999999999886322211 223788999
Q ss_pred hHHHHHHHHHhcchhhhhhcccccccccc
Q 008254 163 VKESVVSMLHLKLENGESKNEKSENTEYV 191 (572)
Q Consensus 163 RE~eVL~ll~~~len~e~~~e~s~~~e~v 191 (572)
||++|++.+..|.-|++......++.-+|
T Consensus 146 RERqVl~~vV~G~~NKqIA~dLgiS~rTV 174 (202)
T COG4566 146 RERQVLDLVVRGLMNKQIAFDLGISERTV 174 (202)
T ss_pred HHHHHHHHHHcCcccHHHHHHcCCchhhH
Confidence 99999999999999999987666654443
No 3
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.84 E-value=4.9e-20 Score=183.47 Aligned_cols=147 Identities=19% Similarity=0.257 Sum_probs=129.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-----CCcEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTI 92 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-----dlPVI 92 (572)
++|||||||+.++..|...|+..||.|..+.++++|++.+.. . ||+||+|++||+ ++|+++++++| .+|||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~-~dlviLD~~lP~-~dG~~~~~~iR~~~~~~~PIi 76 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE--Q-PDLVLLDLMLPD-LDGLELCRRLRAKKGSGPPII 76 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--C-CCEEEEECCCCC-CCHHHHHHHHHhhcCCCCcEE
Confidence 589999999999999999999999999999999999999999 7 999999999999 99999999998 48899
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHh--c--CCCc-------------
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN--A--GGSA------------- 155 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~--~--~~~~------------- 155 (572)
|+|+.++....+.++. +||+|||.||++.+||..+++.++++... . ....
T Consensus 77 ~Lta~~~~~d~v~gl~-------------~GADDYl~KPf~~~EL~ARi~a~lRR~~~~~~~~~~~~~~~g~l~id~~~~ 143 (229)
T COG0745 77 VLTARDDEEDRVLGLE-------------AGADDYLTKPFSPRELLARLRALLRRNAGASRAEASEVLVFGDLTLDPDTR 143 (229)
T ss_pred EEECCCcHHHHHHHHh-------------CcCCeeeeCCCCHHHHHHHHHHHHCcCcCcccccccceeEECCEEEEcCcC
Confidence 9999999999999999 99999999999999999999999998642 0 0000
Q ss_pred ------ccCCCChhHHHHHHHHHhcchhhhhh
Q 008254 156 ------LSDSLKPVKESVVSMLHLKLENGESK 181 (572)
Q Consensus 156 ------~~~sLt~RE~eVL~ll~~~len~e~~ 181 (572)
..-.||++|.++|.++...-....++
T Consensus 144 ~v~~~~~~i~Lt~~Ef~lL~~L~~~~g~v~sR 175 (229)
T COG0745 144 TVTLNGRELTLTPKEFELLELLARHPGRVLSR 175 (229)
T ss_pred EEEECCEEecCChHHHHHHHHHHhCCCccCCH
Confidence 02358899999999987755444433
No 4
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.81 E-value=2.9e-19 Score=175.31 Aligned_cols=159 Identities=19% Similarity=0.214 Sum_probs=139.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMD-YIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~g-y~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
++|+|+||++.++.+|+.+|+..+ ++|+ ++.++.++++.+.. ..||+||+|+.||+ ++|+++++.++ +++|
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~--~~pdvvl~Dl~mP~-~~G~e~~~~l~~~~p~~~v 77 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARE--LKPDVVLLDLSMPG-MDGLEALKQLRARGPDIKV 77 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhh--cCCCEEEEcCCCCC-CChHHHHHHHHHHCCCCcE
Confidence 479999999999999999999874 8765 88889999999888 89999999999999 99999999997 7899
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHh----------c-C----CCcc
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN----------A-G----GSAL 156 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~----------~-~----~~~~ 156 (572)
|++|.+.+...+.+++. .||.+|+.|..+.++|..+|+.++.+... . . ....
T Consensus 78 vvlt~~~~~~~v~~al~-------------~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~ 144 (211)
T COG2197 78 VVLTAHDDPAYVIRALR-------------AGADGYLLKDASPEELVEAIRAVAAGGTYLPPDIARKLAGLLPSSSAEAP 144 (211)
T ss_pred EEEeccCCHHHHHHHHH-------------cCCCEEEeCCCCHHHHHHHHHHHHCCCeEeCHHHHHHHHhhccccccccc
Confidence 99999999999999999 99999999999999999999999754211 0 0 0011
Q ss_pred c-CCCChhHHHHHHHHHhcchhhhhhccccccccccc
Q 008254 157 S-DSLKPVKESVVSMLHLKLENGESKNEKSENTEYVL 192 (572)
Q Consensus 157 ~-~sLt~RE~eVL~ll~~~len~e~~~e~s~~~e~v~ 192 (572)
. ..||+||.+|++++..|+.|++...+..++..+|.
T Consensus 145 ~~~~LT~RE~eVL~lla~G~snkeIA~~L~iS~~TVk 181 (211)
T COG2197 145 LAELLTPRELEVLRLLAEGLSNKEIAEELNLSEKTVK 181 (211)
T ss_pred ccCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHhHHH
Confidence 1 36999999999999999999999998888777764
No 5
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.80 E-value=6.9e-20 Score=146.62 Aligned_cols=55 Identities=64% Similarity=0.988 Sum_probs=52.9
Q ss_pred CCceecCHHHHHHHHHHHHHhCC-CCCCCHHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 008254 330 KMKVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQKYRMH 384 (572)
Q Consensus 330 k~r~~Wt~eLh~~Fv~av~~lG~-~~a~Pk~il~lM~v~glt~~~v~SHLQkyr~~ 384 (572)
|+|+.||+|+|++|++||++||. +.|+||.|+++|++++||+.+|+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 68999999999999999999995 89999999999999999999999999999974
No 6
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.78 E-value=3.4e-18 Score=185.14 Aligned_cols=119 Identities=27% Similarity=0.422 Sum_probs=112.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
.+.+|||||||..++..|...|+..||.|.++.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ ++||
T Consensus 3 ~~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~--~~~~lvl~Di~mp~-~~Gl~ll~~i~~~~~~~pV 79 (464)
T COG2204 3 MMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSE--SPFDLVLLDIRMPG-MDGLELLKEIKSRDPDLPV 79 (464)
T ss_pred CcCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEecCCCC-CchHHHHHHHHhhCCCCCE
Confidence 34579999999999999999999999999999999999999999 67999999999999 99999999997 6999
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN 150 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~ 150 (572)
|++|++++.+++++|++ .||+|||.||++.+.|..++.+++.....
T Consensus 80 I~~Tg~g~i~~AV~A~k-------------~GA~Dfl~KP~~~~~L~~~v~ral~~~~~ 125 (464)
T COG2204 80 IVMTGHGDIDTAVEALR-------------LGAFDFLEKPFDLDRLLAIVERALELREL 125 (464)
T ss_pred EEEeCCCCHHHHHHHHh-------------cCcceeeeCCCCHHHHHHHHHHHHHHhhh
Confidence 99999999999999999 99999999999999999999999986543
No 7
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.76 E-value=4e-18 Score=184.67 Aligned_cols=116 Identities=22% Similarity=0.344 Sum_probs=109.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHH--hCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLE--AMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~--~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dl 89 (572)
|.+||||||++.+|++|+.++. ++|++|+ +|.||.+|++.+.+ ..|||||+|+.||. |+|+++++.++ ++
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e--~~pDiviTDI~MP~-mdGLdLI~~ike~~p~~ 77 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE--TQPDIVITDINMPG-MDGLDLIKAIKEQSPDT 77 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh--cCCCEEEEecCCCC-CcHHHHHHHHHHhCCCc
Confidence 4689999999999999999996 4588766 99999999999999 89999999999999 99999999997 79
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
-+||+|++++.+.+.+|+. +|+.|||+||++.++|.+++.++..+.
T Consensus 78 ~~IILSGy~eFeYak~Am~-------------lGV~dYLLKP~~k~eL~~~L~ki~~kl 123 (475)
T COG4753 78 EFIILSGYDEFEYAKKAMK-------------LGVKDYLLKPVDKAELEEALKKIIGKL 123 (475)
T ss_pred eEEEEeccchhHHHHHHHh-------------cCchhheeCcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999998764
No 8
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.75 E-value=1.9e-17 Score=159.12 Aligned_cols=161 Identities=13% Similarity=0.194 Sum_probs=137.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-E-EEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCC---ChHHHHHHhc---
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDY-I-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTD---GSFKFLETAK--- 87 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy-~-V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~m---dG~~lLe~Ir--- 87 (572)
+.++||||||++..+..|+.+|+..++ . +.++.++.+++..+.. ..||+||+|+.||+ + +|+++++.++
T Consensus 2 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~DlvllD~~l~~-~~~~~g~~~~~~l~~~~ 78 (216)
T PRK10840 2 NNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK--LDAHVLITDLSMPG-DKYGDGITLIKYIKRHF 78 (216)
T ss_pred CceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh--CCCCEEEEeCcCCC-CCCCCHHHHHHHHHHHC
Confidence 357999999999999999999988765 4 6689999999999988 78999999999998 5 8999999986
Q ss_pred -CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHh----------c--CCC
Q 008254 88 -DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN----------A--GGS 154 (572)
Q Consensus 88 -dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~----------~--~~~ 154 (572)
.+|||++|...+...+..++. .||++||.||.+.++|..+|+.+..+... . ...
T Consensus 79 ~~~~iIvls~~~~~~~~~~a~~-------------~Ga~~yl~K~~~~~~l~~ai~~v~~g~~~~~~~~~~~~~~~~~~~ 145 (216)
T PRK10840 79 PSLSIIVLTMNNNPAILSAVLD-------------LDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGG 145 (216)
T ss_pred CCCcEEEEEecCCHHHHHHHHH-------------CCCeEEEECCCCHHHHHHHHHHHHCCCeecCHHHHHHHHHhccCC
Confidence 589999999999998889988 99999999999999999999987653210 0 011
Q ss_pred cccCCCChhHHHHHHHHHhcchhhhhhccccccccccc
Q 008254 155 ALSDSLKPVKESVVSMLHLKLENGESKNEKSENTEYVL 192 (572)
Q Consensus 155 ~~~~sLt~RE~eVL~ll~~~len~e~~~e~s~~~e~v~ 192 (572)
.....||+||++|++++..|..+++...+..+...+|.
T Consensus 146 ~~~~~Lt~rE~evl~~~~~G~s~~eIA~~l~iS~~TV~ 183 (216)
T PRK10840 146 YGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTIS 183 (216)
T ss_pred CccccCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHH
Confidence 11346999999999999999999999988888777664
No 9
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.73 E-value=1e-16 Score=156.00 Aligned_cols=161 Identities=10% Similarity=0.105 Sum_probs=134.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAM-DYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~-gy~-V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---- 87 (572)
||+.++||||||++.++..+..+|+.. +|. |..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++
T Consensus 1 ~~~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~--~~pdlvllD~~mp~-~~gle~~~~l~~~~~ 77 (225)
T PRK10046 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER--FKPGLILLDNYLPD-GRGINLLHELVQAHY 77 (225)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCC-CcHHHHHHHHHhcCC
Confidence 577899999999999999999999875 785 6699999999999998 78999999999999 99999999996
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcC---------------
Q 008254 88 DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAG--------------- 152 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~--------------- 152 (572)
.++||++|+..+...+.+++. .||++||.||++.++|..+++++..+.....
T Consensus 78 ~~~iivls~~~~~~~~~~al~-------------~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (225)
T PRK10046 78 PGDVVFTTAASDMETVSEAVR-------------CGVFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQKQIDEMFN 144 (225)
T ss_pred CCCEEEEEcCCCHHHHHHHHH-------------cCccEEEECCcCHHHHHHHHHHHHHHHHHHhccCccCHHHHHHHHh
Confidence 588999999999999999998 9999999999999999999988755422110
Q ss_pred ---C-C------cccCCCChhHHHHHHHHHhc---chhhhhhccccccccccc
Q 008254 153 ---G-S------ALSDSLKPVKESVVSMLHLK---LENGESKNEKSENTEYVL 192 (572)
Q Consensus 153 ---~-~------~~~~sLt~RE~eVL~ll~~~---len~e~~~e~s~~~e~v~ 192 (572)
. . .....||.| +|++++..+ ..+++...+..+...+|.
T Consensus 145 ~~~~~~~~~~~~~~~~~Lt~r--~Vl~~~~~g~~g~s~~eIa~~l~iS~~Tv~ 195 (225)
T PRK10046 145 AYARGEPKDELPTGIDPLTLN--AVRKLFKEPGVQHTAETVAQALTISRTTAR 195 (225)
T ss_pred hcccccccccCCCCCCHHHHH--HHHHHHHcCCCCcCHHHHHHHhCccHHHHH
Confidence 0 0 002337775 899999985 788888877777655553
No 10
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.73 E-value=1.1e-16 Score=136.30 Aligned_cols=107 Identities=23% Similarity=0.406 Sum_probs=102.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEEE
Q 008254 20 VLLLDQDSSAAAELKFKLEAMDY-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIIT 94 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~~gy-~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIiL 94 (572)
||||||++..++.++..|+..|| +|.++.++.+|+..+.. ..||+||+|+.|++ ++|+++++.++ .+|+|++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~--~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~ 77 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKK--HPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVV 77 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH--STESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc--cCceEEEEEeeecc-ccccccccccccccccccEEEe
Confidence 79999999999999999999999 99999999999999999 78999999999999 99999999997 7999999
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHH
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQ 142 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q 142 (572)
|...+.....+++. .|+++||.||++.++|.++++
T Consensus 78 t~~~~~~~~~~~~~-------------~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 78 TDEDDSDEVQEALR-------------AGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp ESSTSHHHHHHHHH-------------TTESEEEESSSSHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-------------CCCCEEEECCCCHHHHHHhhC
Confidence 99999999999999 999999999999999999764
No 11
>PRK09483 response regulator; Provisional
Probab=99.71 E-value=2.6e-16 Score=148.00 Aligned_cols=159 Identities=15% Similarity=0.127 Sum_probs=135.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCc
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~-gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlP 90 (572)
|++|||+||++..+..|+.+|+.. ++.++ .+.++.+++..+.. ..||+||+|+.+++ ++|+++++.++ ++|
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~ 77 (217)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT--NAVDVVLMDMNMPG-IGGLEATRKILRYTPDVK 77 (217)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHHHCCCCe
Confidence 479999999999999999999875 88876 79999999999988 78999999999999 99999999885 699
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhc---------------CCCc
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNA---------------GGSA 155 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~---------------~~~~ 155 (572)
||++|...+......++. .|+++|+.||++.++|..+++.++++.... ....
T Consensus 78 ii~ls~~~~~~~~~~~~~-------------~g~~~~l~k~~~~~~l~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 144 (217)
T PRK09483 78 IIMLTVHTENPLPAKVMQ-------------AGAAGYLSKGAAPQEVVSAIRSVHSGQRYIASDIAQQMALSQIEPATEN 144 (217)
T ss_pred EEEEeCCCCHHHHHHHHH-------------cCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHhhcccCCCc
Confidence 999999999888888888 999999999999999999999887642100 0011
Q ss_pred ccCCCChhHHHHHHHHHhcchhhhhhcccccccccc
Q 008254 156 LSDSLKPVKESVVSMLHLKLENGESKNEKSENTEYV 191 (572)
Q Consensus 156 ~~~sLt~RE~eVL~ll~~~len~e~~~e~s~~~e~v 191 (572)
....||+||.+|++++..|..+++.......+..+|
T Consensus 145 ~~~~Lt~rE~~vl~~~~~G~~~~~Ia~~l~is~~TV 180 (217)
T PRK09483 145 PFASLSERELQIMLMITKGQKVNEISEQLNLSPKTV 180 (217)
T ss_pred cccccCHHHHHHHHHHHCCCCHHHHHHHhCCCHHHH
Confidence 135699999999999999999998877666655554
No 12
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.69 E-value=5.7e-16 Score=143.42 Aligned_cols=153 Identities=21% Similarity=0.218 Sum_probs=130.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAM-DYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~-gy~-V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIi 93 (572)
|++||||||++..+..|+.+|... ++. +..+.++.+++..+.. ..||+||+|+.+++ ++|+++++.++ .+|||+
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~-~~g~~~~~~l~~~~~vi~ 77 (196)
T PRK10360 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG--RGVQVCICDISMPD-ISGLELLSQLPKGMATIM 77 (196)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHccCCCEEE
Confidence 468999999999999999999864 665 5689999999999987 78999999999999 99999999997 799999
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHh-------cCCCcccCCCChhHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN-------AGGSALSDSLKPVKES 166 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~-------~~~~~~~~sLt~RE~e 166 (572)
+|...+......++. .||++|+.||++.++|..+++.++++... .........||++|.+
T Consensus 78 ~s~~~~~~~~~~~~~-------------~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~ 144 (196)
T PRK10360 78 LSVHDSPALVEQALN-------------AGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQ 144 (196)
T ss_pred EECCCCHHHHHHHHH-------------cCCcEEEECCCCHHHHHHHHHHHHcCCeeeCHHHHHHHHhccccCCCHHHHH
Confidence 999999999999998 99999999999999999999988764210 0001113469999999
Q ss_pred HHHHHHhcchhhhhhcccc
Q 008254 167 VVSMLHLKLENGESKNEKS 185 (572)
Q Consensus 167 VL~ll~~~len~e~~~e~s 185 (572)
+++++..+..+++...+..
T Consensus 145 il~~l~~g~~~~~Ia~~l~ 163 (196)
T PRK10360 145 VAEKLAQGMAVKEIAAELG 163 (196)
T ss_pred HHHHHHCCCCHHHHHHHhC
Confidence 9999999988887766544
No 13
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.69 E-value=1.1e-15 Score=142.43 Aligned_cols=154 Identities=16% Similarity=0.138 Sum_probs=131.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVI 92 (572)
|+||+|||++..+..+...|+..||.+. .+.++.+++..+.. ..||+||+|+.+++ ++|+++++.++ ..|+|
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~ii 77 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPG-VNGIQVLETLRKRQYSGIII 77 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc--cCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCeEE
Confidence 5899999999999999999998899987 79999999999988 78999999999999 99999999986 57899
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHh----------c--CCCcccCCC
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN----------A--GGSALSDSL 160 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~----------~--~~~~~~~sL 160 (572)
++|+..+......++. .||++|+.||++.++|..+++.++++... . ........|
T Consensus 78 ~ls~~~~~~~~~~~~~-------------~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 144 (204)
T PRK09958 78 IVSAKNDHFYGKHCAD-------------AGANGFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSL 144 (204)
T ss_pred EEeCCCCHHHHHHHHH-------------CCCCEEEecCCCHHHHHHHHHHHHcCCcccCHHHHHHHHhccCCCcccccC
Confidence 9999999888888888 99999999999999999999988754210 0 011123469
Q ss_pred ChhHHHHHHHHHhcchhhhhhcccccc
Q 008254 161 KPVKESVVSMLHLKLENGESKNEKSEN 187 (572)
Q Consensus 161 t~RE~eVL~ll~~~len~e~~~e~s~~ 187 (572)
|++|.+|+.++..+..+++.......+
T Consensus 145 t~~E~~vl~~l~~g~~~~~I~~~l~~s 171 (204)
T PRK09958 145 SKQEISVMRYILDGKDNNDIAEKMFIS 171 (204)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHhCCC
Confidence 999999999999998877776554433
No 14
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.68 E-value=1.9e-15 Score=141.71 Aligned_cols=141 Identities=18% Similarity=0.304 Sum_probs=123.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIi 93 (572)
|+||||||+...+..+...|+..||.+..+.++.+++..+.. ..||+||+|+.|++ ++|+++++.++ ++|+|+
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~-~~g~~~~~~i~~~~~~~~ii~ 77 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--APYDAVILDLTLPG-MDGRDILREWREKGQREPVLI 77 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCcEEE
Confidence 589999999999999999999999999999999999999887 78999999999999 89999999886 689999
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcC-------C------C------
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAG-------G------S------ 154 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~-------~------~------ 154 (572)
+|+..+.....+++. .||++|+.||++.++|..+++.++++..... . .
T Consensus 78 lt~~~~~~~~~~~~~-------------~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (219)
T PRK10336 78 LTARDALAERVEGLR-------------LGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLA 144 (219)
T ss_pred EECCCCHHHHHHHHh-------------CCCCeEEECCCCHHHHHHHHHHHHhccccCCCCceeECCEEEEcccCEEEEC
Confidence 999999999999998 9999999999999999999998887532110 0 0
Q ss_pred cccCCCChhHHHHHHHHHhc
Q 008254 155 ALSDSLKPVKESVVSMLHLK 174 (572)
Q Consensus 155 ~~~~sLt~RE~eVL~ll~~~ 174 (572)
.....||++|.+++.++..+
T Consensus 145 ~~~~~Lt~~E~~il~~l~~~ 164 (219)
T PRK10336 145 GEPLTLKPKEFALLELLMRN 164 (219)
T ss_pred CEEEecCHHHHHHHHHHHhC
Confidence 00124999999999999887
No 15
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.68 E-value=2.6e-15 Score=140.63 Aligned_cols=140 Identities=17% Similarity=0.344 Sum_probs=122.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIi 93 (572)
|+||||||+...+..|...|+..||.+..+.++.+++..+.. ..||+||+|+.||+ ++|+++++.++ .+|||+
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~illd~~~~~-~~g~~~~~~l~~~~~~~pii~ 77 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES--GHYSLVVLDLGLPD-EDGLHLLRRWRQKKYTLPVLI 77 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCcEEE
Confidence 589999999999999999999999999999999999999988 78999999999999 99999999886 689999
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCCCc------------------
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSA------------------ 155 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~~~------------------ 155 (572)
+|+..+......++. .||++||.||++.++|..+++.++++........
T Consensus 78 ls~~~~~~~~~~~~~-------------~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (222)
T PRK10643 78 LTARDTLEDRVAGLD-------------VGADDYLVKPFALEELHARIRALIRRHQGQGENELQVGNLTLNLGRQQVWLD 144 (222)
T ss_pred EECCCCHHHHHHHHh-------------cCCCeEEeCCCCHHHHHHHHHHHHhhhccccCCceEECCEEEEcCCCEEEEC
Confidence 999999999999998 9999999999999999999998887643211100
Q ss_pred -ccCCCChhHHHHHHHHHh
Q 008254 156 -LSDSLKPVKESVVSMLHL 173 (572)
Q Consensus 156 -~~~sLt~RE~eVL~ll~~ 173 (572)
....||++|.+++.++..
T Consensus 145 ~~~~~Lt~~E~~il~~l~~ 163 (222)
T PRK10643 145 GQELILTPKEFALLSRLML 163 (222)
T ss_pred CEEEecCHHHHHHHHHHHh
Confidence 023599999999998764
No 16
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.67 E-value=2.7e-15 Score=140.55 Aligned_cols=142 Identities=15% Similarity=0.248 Sum_probs=123.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------CCc
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLP 90 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------dlP 90 (572)
+.+||||||+...+..|...|+..||.+..+.++.+++..+.. ..||+||+|+.||+ ++|+++++.++ ++|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~vi~d~~~~~-~~g~~~~~~l~~~~~~~~~~ 78 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE--RGPDLILLDWMLPG-TSGIELCRRLRRRPETRAIP 78 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh--cCCCEEEEECCCCC-CcHHHHHHHHHccccCCCCC
Confidence 3689999999999999999999999999999999999999988 78999999999999 99999999885 489
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCCC----------------
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGS---------------- 154 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~~---------------- 154 (572)
||++|+..+.....+++. .||++||.||++.++|..+++.++++.......
T Consensus 79 ii~ls~~~~~~~~~~~~~-------------~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (226)
T TIGR02154 79 IIMLTARGEEEDRVRGLE-------------TGADDYITKPFSPRELLARIKAVLRRIRPQLSDEVIEVGDLSLDPVAHR 145 (226)
T ss_pred EEEEecCCCHHHHHHHHh-------------cCcceEEeCCCCHHHHHHHHHHHhcccccccccCceEECCEEEEcCccE
Confidence 999999999888889988 999999999999999999999988764211100
Q ss_pred ----cccCCCChhHHHHHHHHHhc
Q 008254 155 ----ALSDSLKPVKESVVSMLHLK 174 (572)
Q Consensus 155 ----~~~~sLt~RE~eVL~ll~~~ 174 (572)
.....||++|.+++.++..+
T Consensus 146 ~~~~~~~~~Lt~~E~~il~~l~~~ 169 (226)
T TIGR02154 146 VFRGGQPLSLGPTEFRLLHFFMTH 169 (226)
T ss_pred EEECCEEEEcCHHHHHHHHHHHhC
Confidence 00124999999999999884
No 17
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.67 E-value=2.1e-15 Score=143.06 Aligned_cols=147 Identities=15% Similarity=0.238 Sum_probs=126.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIi 93 (572)
|+||+|||+...+..+...|+..||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ ++|||+
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~-~~g~~l~~~lr~~~~~~pii~ 77 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE--HLPDIAIVDLGLPD-EDGLSLIRRWRSNDVSLPILV 77 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCCEEE
Confidence 489999999999999999999999999999999999999988 78999999999999 99999999886 689999
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCCCc------------------
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSA------------------ 155 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~~~------------------ 155 (572)
+|+..+......++. .||++||.||++.++|..+++.++++........
T Consensus 78 ls~~~~~~~~~~~l~-------------~Ga~d~l~kp~~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (223)
T PRK10816 78 LTARESWQDKVEVLS-------------AGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSIN 144 (223)
T ss_pred EEcCCCHHHHHHHHH-------------cCCCeeEeCCCCHHHHHHHHHHHHhccccCCCCeEEECCEEEEcccCEEEEC
Confidence 999999999999998 9999999999999999999999887642111100
Q ss_pred -ccCCCChhHHHHHHHHHhcchhhhh
Q 008254 156 -LSDSLKPVKESVVSMLHLKLENGES 180 (572)
Q Consensus 156 -~~~sLt~RE~eVL~ll~~~len~e~ 180 (572)
..-.||++|.+++.++........+
T Consensus 145 ~~~i~Lt~~E~~ll~~L~~~~~~vvs 170 (223)
T PRK10816 145 DEVIKLTAFEYTIMETLIRNNGKVVS 170 (223)
T ss_pred CEEEeCCHHHHHHHHHHHhCCCeeEc
Confidence 0235999999999998765543333
No 18
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.67 E-value=2.8e-15 Score=142.03 Aligned_cols=145 Identities=15% Similarity=0.217 Sum_probs=125.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcEEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPVIiL 94 (572)
.+||||||++..+..|...|+..||.+..+.++.+++..+.. ..||+||+|+.||+ ++|+++++.++ ++|+|++
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~-~~g~~~~~~lr~~~~~pvi~l 78 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPD-GDGIEFIRDLRQWSAIPVIVL 78 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHcCCCCCEEEE
Confidence 589999999999999999999999999999999999998887 78999999999999 99999999987 7999999
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCCC-c------------------
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGS-A------------------ 155 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~~-~------------------ 155 (572)
|+..+.....+++. .||++||.||++.++|..+++.++++....... .
T Consensus 79 t~~~~~~~~~~~~~-------------~ga~~~l~kP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 145 (225)
T PRK10529 79 SARSEESDKIAALD-------------AGADDYLSKPFGIGELQARLRVALRRHSATPAPDPLVKFSDVTVDLAARVIHR 145 (225)
T ss_pred ECCCCHHHHHHHHH-------------cCCCEEEeCCCCHHHHHHHHHHHHhhcccccCCCcceeECCEEEEcccCEEEE
Confidence 99999999999998 999999999999999999999988764321110 0
Q ss_pred --ccCCCChhHHHHHHHHHhcchhh
Q 008254 156 --LSDSLKPVKESVVSMLHLKLENG 178 (572)
Q Consensus 156 --~~~sLt~RE~eVL~ll~~~len~ 178 (572)
..-.||++|.+++.++.......
T Consensus 146 ~~~~~~Lt~~E~~ll~~L~~~~~~~ 170 (225)
T PRK10529 146 GEEEVHLTPIEFRLLAVLLNNAGKV 170 (225)
T ss_pred CCEEEECCHHHHHHHHHHHhCCCee
Confidence 02348999999998887654433
No 19
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.67 E-value=3e-15 Score=140.78 Aligned_cols=142 Identities=16% Similarity=0.239 Sum_probs=123.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVI 92 (572)
+++||||||+...+..+...|...||.|..+.++.+++..+.. ..||+||+|+.|++ .+|+++++.++ ++|||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~-~~g~~~~~~l~~~~~~~~ii 79 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ--QPPDLVILDVGLPD-ISGFELCRQLLAFHPALPVI 79 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCCEE
Confidence 4699999999999999999999999999999999999999887 78999999999999 99999999986 68999
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcC---CC---------------
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAG---GS--------------- 154 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~---~~--------------- 154 (572)
++|+..+......++. .||++||.||++.++|..+++.++++..... ..
T Consensus 80 ~ls~~~~~~~~~~a~~-------------~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (228)
T PRK11083 80 FLTARSDEVDRLVGLE-------------IGADDYVAKPFSPREVAARVRTILRRVKKFAAPSPVIRIGHFELDEPAARI 146 (228)
T ss_pred EEEcCCcHHHHHHHhh-------------cCCCeEEECCCCHHHHHHHHHHHHCccccccCCCceeEECCEEEecCccEE
Confidence 9999988888888888 9999999999999999999998887642210 00
Q ss_pred ---cccCCCChhHHHHHHHHHhc
Q 008254 155 ---ALSDSLKPVKESVVSMLHLK 174 (572)
Q Consensus 155 ---~~~~sLt~RE~eVL~ll~~~ 174 (572)
.....||++|.++|.++..+
T Consensus 147 ~~~~~~~~Lt~~E~~il~~l~~~ 169 (228)
T PRK11083 147 SYFGTPLTLTRYEFLLLKTLLLS 169 (228)
T ss_pred EECCEEeecCHHHHHHHHHHHhC
Confidence 00134999999999999986
No 20
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.67 E-value=7.2e-16 Score=151.90 Aligned_cols=116 Identities=16% Similarity=0.290 Sum_probs=107.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~-gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
++|||||||+.+.+.-+.++++. ||.++ ++.+.++|..++++ ..+|||++|+.||+ .+|++||..++ .+-|
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~--~~pDLILLDiYmPd-~~Gi~lL~~ir~~~~~~DV 77 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEE--FKPDLILLDIYMPD-GNGIELLPELRSQHYPVDV 77 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHh--hCCCEEEEeeccCC-CccHHHHHHHHhcCCCCCE
Confidence 58999999999999999999987 88655 99999999999998 78899999999999 99999999997 6889
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
|++|+-.+.+++.+|+. .||.|||+||+..+.|..++..-.+++.
T Consensus 78 I~iTAA~d~~tI~~alr-------------~Gv~DYLiKPf~~eRl~~aL~~y~~~r~ 122 (224)
T COG4565 78 IVITAASDMETIKEALR-------------YGVVDYLIKPFTFERLQQALTRYRQKRH 122 (224)
T ss_pred EEEeccchHHHHHHHHh-------------cCchhheecceeHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999998887776553
No 21
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.66 E-value=4e-15 Score=140.17 Aligned_cols=146 Identities=14% Similarity=0.257 Sum_probs=126.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcEEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPVIiL 94 (572)
|+||||||+...+..+...|+..||.+..+.++.+++..+.. ..||+||+|+.||+ ++|+++++.++ ++|||++
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~ii~l 77 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--DDYALIILDIMLPG-MDGWQILQTLRTAKQTPVICL 77 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEECCCCC-CCHHHHHHHHHcCCCCCEEEE
Confidence 489999999999999999999999999999999999999987 78999999999999 99999999886 7999999
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCCCc------------------c
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSA------------------L 156 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~~~------------------~ 156 (572)
|+..+.....+++. .||++||.||++.++|..+++.++++........ .
T Consensus 78 s~~~~~~~~~~a~~-------------~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (223)
T PRK11517 78 TARDSVDDRVRGLD-------------SGANDYLVKPFSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNI 144 (223)
T ss_pred ECCCCHHHHHHHHh-------------cCCCEEEECCCCHHHHHHHHHHHHccccCcCCeEEECCEEEEcCCCEEEECCE
Confidence 99999999999998 9999999999999999999998887542211100 0
Q ss_pred cCCCChhHHHHHHHHHhcchhhh
Q 008254 157 SDSLKPVKESVVSMLHLKLENGE 179 (572)
Q Consensus 157 ~~sLt~RE~eVL~ll~~~len~e 179 (572)
.-.||++|.+++.++..+.....
T Consensus 145 ~~~Lt~~E~~il~~l~~~~g~~~ 167 (223)
T PRK11517 145 SITLTRKEFQLLWLLASRAGEII 167 (223)
T ss_pred EEeCCHHHHHHHHHHHhCCCccC
Confidence 12599999999999988654433
No 22
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.66 E-value=4.7e-15 Score=140.50 Aligned_cols=147 Identities=19% Similarity=0.273 Sum_probs=125.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcEEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPVIiL 94 (572)
.+||||||++..+..|...|+..||.+..+.++.+++..+.. .||+||+|+.||+ ++|+++++.++ .+|+|++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~-~~g~~~~~~l~~~~~~~ii~l 77 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPK-KNGIDTLKELRQTHQTPVIML 77 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCC-CcHHHHHHHHHhcCCCcEEEE
Confidence 589999999999999999999999999999999999998754 5999999999999 99999999997 4899999
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCC-------------Cc------
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG-------------SA------ 155 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~-------------~~------ 155 (572)
|+..+.....+++. .||++||.||++.++|..+++.++++...... ..
T Consensus 78 t~~~~~~~~~~~~~-------------~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (232)
T PRK10955 78 TARGSELDRVLGLE-------------LGADDYLPKPFNDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALSLNPG 144 (232)
T ss_pred ECCCCHHHHHHHHH-------------cCCCEEEcCCCCHHHHHHHHHHHHhccccccccccccCCCceEEECCEEEecC
Confidence 99998888888888 99999999999999999999998876421100 00
Q ss_pred --------ccCCCChhHHHHHHHHHhcchhhhhh
Q 008254 156 --------LSDSLKPVKESVVSMLHLKLENGESK 181 (572)
Q Consensus 156 --------~~~sLt~RE~eVL~ll~~~len~e~~ 181 (572)
....||++|.++|.++..+..+-.+.
T Consensus 145 ~~~~~~~~~~~~Lt~~E~~~l~~l~~~~~~v~sr 178 (232)
T PRK10955 145 RQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 (232)
T ss_pred CCEEEECCEEecCCHHHHHHHHHHHhCCCceEcH
Confidence 01259999999999999887654443
No 23
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.65 E-value=6.8e-15 Score=139.91 Aligned_cols=142 Identities=12% Similarity=0.249 Sum_probs=123.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIi 93 (572)
|+||||||+...+..|...|+..||.|..+.++.+++..+.. ..||+||+|+.||+ ++|+++++.++ ++|||+
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~~~~-~~g~~~~~~lr~~~~~~pii~ 77 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT--GDYDLIILDIMLPD-VNGWDIVRMLRSANKGMPILL 77 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCCEEE
Confidence 489999999999999999999999999999999999998887 78999999999999 99999999886 689999
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhc-CCCc-----------------
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNA-GGSA----------------- 155 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~-~~~~----------------- 155 (572)
+|+..+.+...+++. .||++||.||++.++|..+++.++++.... ....
T Consensus 78 ls~~~~~~~~~~~~~-------------~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (227)
T PRK09836 78 LTALGTIEHRVKGLE-------------LGADDYLVKPFAFAELLARVRTLLRRGAAVIIESQFQVADLMVDLVSRKVTR 144 (227)
T ss_pred EEcCCCHHHHHHHHh-------------CCCCEEEeCCCCHHHHHHHHHHHHhcccccCCCCcEEEcCEEEEcccCEEEE
Confidence 999999999999998 999999999999999999999988753211 1100
Q ss_pred --ccCCCChhHHHHHHHHHhcc
Q 008254 156 --LSDSLKPVKESVVSMLHLKL 175 (572)
Q Consensus 156 --~~~sLt~RE~eVL~ll~~~l 175 (572)
..-.||++|.+++.++....
T Consensus 145 ~~~~i~Lt~~E~~ll~~l~~~~ 166 (227)
T PRK09836 145 SGTRITLTSKEFTLLEFFLRHQ 166 (227)
T ss_pred CCEEEecCHHHHHHHHHHHhCC
Confidence 01249999999999988633
No 24
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.65 E-value=7.7e-15 Score=139.72 Aligned_cols=142 Identities=13% Similarity=0.228 Sum_probs=123.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------CCcE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLPT 91 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------dlPV 91 (572)
.+||||||++..+..|...|+..||.+..+.++.+|+..+.. ..+|+||+|+.|++ ++|+++++.++ .+||
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~-~~g~~~~~~l~~~~~~~~~pv 79 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPG-GSGIQFIKHLKRESMTRDIPV 79 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCC-CCHHHHHHHHHhccccCCCCE
Confidence 589999999999999999999999999999999999999987 78999999999999 99999999885 4799
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCC-------C----------
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG-------S---------- 154 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~-------~---------- 154 (572)
|++|+..+.....+++. .||++||.||++.++|..+++.++++...... .
T Consensus 80 i~ls~~~~~~~~~~~~~-------------~Ga~~~l~kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (229)
T PRK10161 80 VMLTARGEEEDRVRGLE-------------TGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRV 146 (229)
T ss_pred EEEECCCCHHHHHHHHH-------------cCCCEEEECCCCHHHHHHHHHHHHhcccccCcCceeEECCEEEEcCcCEE
Confidence 99999999999999998 99999999999999999999998876321100 0
Q ss_pred ---cccCCCChhHHHHHHHHHhcc
Q 008254 155 ---ALSDSLKPVKESVVSMLHLKL 175 (572)
Q Consensus 155 ---~~~~sLt~RE~eVL~ll~~~l 175 (572)
.....||++|.+++.++....
T Consensus 147 ~~~~~~~~Lt~~E~~ll~~l~~~~ 170 (229)
T PRK10161 147 MAGEEPLEMGPTEFKLLHFFMTHP 170 (229)
T ss_pred EECCEEEEcCHHHHHHHHHHHhCC
Confidence 001259999999999998643
No 25
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.65 E-value=9.9e-15 Score=137.94 Aligned_cols=144 Identities=11% Similarity=0.175 Sum_probs=124.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcEEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPVIiL 94 (572)
++||+|||+...+..+...|+..||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ ++|+|++
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~-~~g~~~~~~lr~~~~~~ii~l 79 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN--QHVDLILLDINLPG-EDGLMLTRELRSRSTVGIILV 79 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhCCCCCEEEE
Confidence 589999999999999999999999999999999999999988 78999999999999 99999999997 6999999
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcC---------CCc----------
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAG---------GSA---------- 155 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~---------~~~---------- 155 (572)
++..+.....+++. .||++||.||++.++|...++.++++..... ...
T Consensus 80 ~~~~~~~~~~~~l~-------------~Ga~d~l~kP~~~~~L~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (221)
T PRK10766 80 TGRTDSIDRIVGLE-------------MGADDYVTKPLELRELLVRVKNLLWRISLARQAQPHAQEEDNCYRFAGYCLNV 146 (221)
T ss_pred ECCCcHHHHHHHHH-------------cCCCcEEeCCCCHHHHHHHHHHHHhhhcccccccccccCCCCceEECCEEEEc
Confidence 99999888888888 9999999999999999999998887642100 000
Q ss_pred ---------ccCCCChhHHHHHHHHHhcchh
Q 008254 156 ---------LSDSLKPVKESVVSMLHLKLEN 177 (572)
Q Consensus 156 ---------~~~sLt~RE~eVL~ll~~~len 177 (572)
..-.||++|.+++.++......
T Consensus 147 ~~~~~~~~~~~v~Lt~~E~~ll~~l~~~~~~ 177 (221)
T PRK10766 147 SRRTLERNGEPIKLTKAEYELLVAFVTNPGQ 177 (221)
T ss_pred ccCEEEECCEEecCCHHHHHHHHHHHHCCCc
Confidence 0235999999999988765433
No 26
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.64 E-value=1.1e-14 Score=135.31 Aligned_cols=159 Identities=14% Similarity=0.154 Sum_probs=132.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~-gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dl 89 (572)
+..+||||||++..+..+...|+.. ++.+. .+.++.+++..+.. ..||+||+|+.+++ ++|+++++.++ .+
T Consensus 2 ~~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvild~~l~~-~~g~~~~~~l~~~~~~~ 78 (210)
T PRK09935 2 KPASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT--RPVDLIIMDIDLPG-TDGFTFLKRIKQIQSTV 78 (210)
T ss_pred CcceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHHhCCCC
Confidence 3578999999999999999999877 67775 78899999999887 78999999999999 99999999986 68
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHh----------cCC----Cc
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN----------AGG----SA 155 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~----------~~~----~~ 155 (572)
|||++|+..+.....+++. .|+++|+.||++.++|..+++.++.+... ... ..
T Consensus 79 ~ii~ls~~~~~~~~~~~~~-------------~g~~~~l~kp~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 145 (210)
T PRK09935 79 KVLFLSSKSECFYAGRAIQ-------------AGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSS 145 (210)
T ss_pred cEEEEECCCcHHHHHHHHH-------------cCCCEEEeCCCCHHHHHHHHHHHHcCCceeCHHHHHHHHhcccccCcc
Confidence 9999999999888889988 99999999999999999999887664211 000 01
Q ss_pred ccCCCChhHHHHHHHHHhcchhhhhhccccccccc
Q 008254 156 LSDSLKPVKESVVSMLHLKLENGESKNEKSENTEY 190 (572)
Q Consensus 156 ~~~sLt~RE~eVL~ll~~~len~e~~~e~s~~~e~ 190 (572)
....||++|.++++++..+..+++...+...+..+
T Consensus 146 ~~~~lt~re~~vl~~l~~g~s~~eIa~~l~~s~~t 180 (210)
T PRK09935 146 TDTVLSNREVTILRYLVSGLSNKEIADQLLLSNKT 180 (210)
T ss_pred ccccCCHHHHHHHHHHHcCCCHHHHHHHhCCCHHH
Confidence 12359999999999999999888887766544433
No 27
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.64 E-value=1.3e-14 Score=142.23 Aligned_cols=162 Identities=14% Similarity=0.222 Sum_probs=126.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCc
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~-gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlP 90 (572)
|++||||||++.++..++.+|... ++.+. .+.++.+|+..+......||+||+|+.||+ ++|+++++.++ ++|
T Consensus 1 m~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~-~~G~eli~~l~~~~~~~~ 79 (239)
T PRK10430 1 MINVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQ-ENGLDLLPVLHEAGCKSD 79 (239)
T ss_pred CeeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCC-CCcHHHHHHHHhhCCCCC
Confidence 478999999999999999999874 77654 889999999988631156999999999999 99999999996 689
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH-----------------hcCC
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF-----------------NAGG 153 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~-----------------~~~~ 153 (572)
||++|+..+.....+++. .||++||.||++.++|..++..+..+.. ....
T Consensus 80 vI~ls~~~~~~~~~~al~-------------~Ga~~yl~Kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (239)
T PRK10430 80 VIVISSAADAATIKDSLH-------------YGVVDYLIKPFQASRFEEALTGWRQKKMALEKHQYYDQAELDQLIHGSS 146 (239)
T ss_pred EEEEECCCcHHHHHHHHH-------------cCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHhhcc
Confidence 999999999999999999 9999999999999999999876433210 0000
Q ss_pred ----C--cccCCCChhHHHHH-HHHH----hcchhhhhhccccccccccc
Q 008254 154 ----S--ALSDSLKPVKESVV-SMLH----LKLENGESKNEKSENTEYVL 192 (572)
Q Consensus 154 ----~--~~~~sLt~RE~eVL-~ll~----~~len~e~~~e~s~~~e~v~ 192 (572)
. .....||+|+.+++ .++. .++.+++...+...+..+|.
T Consensus 147 ~~~~~~~~~~~~Lt~re~~~l~~~i~~~~~~g~s~~eIA~~l~iS~~Tv~ 196 (239)
T PRK10430 147 SNEQDPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANAVNISRVSCR 196 (239)
T ss_pred ccccccccCCCCCCHHHHHHHHHHHHhCCCCCcCHHHHHHHhCchHHHHH
Confidence 0 01235899997655 4553 67788887776666655543
No 28
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.63 E-value=2.2e-14 Score=136.09 Aligned_cols=141 Identities=19% Similarity=0.266 Sum_probs=121.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCC-CChHHHHHHhc----CCcEEE
Q 008254 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK----DLPTII 93 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~-mdG~~lLe~Ir----dlPVIi 93 (572)
+||||||+...+..+...|+..||.+..+.++.+++..+.. ..||+||+|+.||+. .+|+++++.++ ++|||+
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ 79 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ--RLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIF 79 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh--CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 69999999999999999999999999999999999999988 789999999999972 27999999886 689999
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcC-----CCc-------------
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAG-----GSA------------- 155 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~-----~~~------------- 155 (572)
+|+..+......++. .||++|+.||++.++|..+++.++++..... ...
T Consensus 80 ls~~~~~~~~~~~~~-------------~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (227)
T TIGR03787 80 LTARDSDFDTVSGLR-------------LGADDYLTKDISLPHLLARITALFRRAEALQKPQKQDDLITRGPLTLDSDRM 146 (227)
T ss_pred EECCCCHHHHHHHHh-------------cCCCEEEECCCCHHHHHHHHHHHHHhhhhccccccccceEEECCEEEEcccC
Confidence 999999998999988 9999999999999999999999988642110 000
Q ss_pred ------ccCCCChhHHHHHHHHHhc
Q 008254 156 ------LSDSLKPVKESVVSMLHLK 174 (572)
Q Consensus 156 ------~~~sLt~RE~eVL~ll~~~ 174 (572)
....||++|.++|.++...
T Consensus 147 ~~~~~~~~~~Lt~~E~~il~~l~~~ 171 (227)
T TIGR03787 147 TVFWQDQPIDLTVTEFWMVHALAKH 171 (227)
T ss_pred EEEECCEEecCCHHHHHHHHHHHhC
Confidence 0135999999999999874
No 29
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.63 E-value=2.4e-15 Score=157.41 Aligned_cols=116 Identities=22% Similarity=0.322 Sum_probs=108.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-------C
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-------D 88 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-------d 88 (572)
..++||+|||.+..+..++.+|+..+|.|.+|.++++|++++.+ ..+|+||+|++||+ |+|++++.+++ +
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~--~~~dlvllD~~mp~-mdg~ev~~~lk~~~p~t~~ 89 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQE--EPPDLVLLDVRMPE-MDGAEVLNKLKAMSPSTRR 89 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcc--cCCceEEeeccCCC-ccHHHHHHHHHhcCCcccc
Confidence 56899999999999999999999999999999999999999999 56999999999999 99999999996 6
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 89 LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
+|||++|+..+.+...+|+. .||++||.|||+..+|+..+...+..
T Consensus 90 ip~i~lT~~~d~~~~~~~~~-------------~g~~dyl~KP~~~~~l~~rv~~~~q~ 135 (360)
T COG3437 90 IPVILLTAYADSEDRQRALE-------------AGADDYLSKPISPKELVARVSSHLQL 135 (360)
T ss_pred cceEEEeecCChHHHHHHHH-------------hhHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999999999988655543
No 30
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.63 E-value=1.4e-14 Score=126.25 Aligned_cols=116 Identities=22% Similarity=0.354 Sum_probs=102.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHH-HHHHHhhcCCC-CeeEEEEeCCCCCCCChHHHHHHhc----C
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNEN-EALSAFSDKPE-NFHVAIVEVTTSNTDGSFKFLETAK----D 88 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~-EAL~~L~e~~~-~pDLVIvDv~mPd~mdG~~lLe~Ir----d 88 (572)
....+||+|||++..+..++.+|+..||.|..+.++. +|+..++. . .||+||+|+.||+ ++|+++++.++ .
T Consensus 3 ~~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~--~~~~dlii~D~~mp~-~~G~~~~~~l~~~~~~ 79 (130)
T COG0784 3 LSGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRE--LPQPDLILLDINMPG-MDGIELLRRLRARGPN 79 (130)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHh--CCCCCEEEEeCCCCC-CCHHHHHHHHHhCCCC
Confidence 3568999999999999999999999999999999996 99999998 6 4999999999999 99999999997 4
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHH-HHHHHHHHHH
Q 008254 89 LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDK-LRNLWQHVVH 146 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~ee-L~~~~q~Vlr 146 (572)
+|+|++|++.......+++. .|+++|+.||+...+ |..++++.+.
T Consensus 80 ~pvv~~t~~~~~~~~~~~~~-------------~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 80 IPVILLTAYADEADRERALA-------------AGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred CCEEEEEcCcCHHHHHHHHH-------------cCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 89999999988877777777 999999999977766 7776665543
No 31
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.62 E-value=1.9e-14 Score=137.00 Aligned_cols=142 Identities=22% Similarity=0.327 Sum_probs=123.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcEEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTII 93 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPVIi 93 (572)
+++||||||++..+..|...|+..+|.|..+.++.+++..+.. ..||+||+|+.||+ .+|+++++.++ ++|+|+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~--~~~d~illd~~~~~-~~g~~~~~~l~~~~~~~ii~ 82 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK--EQPDLVILDVMMPK-LDGYGVCQEIRKESDVPIIM 82 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCcEEE
Confidence 4799999999999999999999999999999999999999887 78999999999999 89999999886 799999
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhc-------CCCc-----------
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNA-------GGSA----------- 155 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~-------~~~~----------- 155 (572)
+|+..+......++. .||++||.||++.++|..+++.++++.... ....
T Consensus 83 ls~~~~~~~~~~~~~-------------~Ga~~~l~kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (240)
T CHL00148 83 LTALGDVSDRITGLE-------------LGADDYVVKPFSPKELEARIRSVLRRTNKKSFSSKIPNSSIIRIGFLKIDLN 149 (240)
T ss_pred EECCCCHHhHHHHHH-------------CCCCEEEeCCCCHHHHHHHHHHHHhhccccccccccCCCceEEECCEEEEcC
Confidence 999999888888888 999999999999999999999888764211 0000
Q ss_pred --------ccCCCChhHHHHHHHHHhc
Q 008254 156 --------LSDSLKPVKESVVSMLHLK 174 (572)
Q Consensus 156 --------~~~sLt~RE~eVL~ll~~~ 174 (572)
....||++|.+++.++...
T Consensus 150 ~~~~~~~~~~~~Lt~~E~~il~~l~~~ 176 (240)
T CHL00148 150 KKQVYKNNERIRLTGMEFSLLELLISK 176 (240)
T ss_pred CCEEEECCEEEEcCHHHHHHHHHHHHC
Confidence 0124999999999998753
No 32
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.62 E-value=1.6e-14 Score=135.04 Aligned_cols=144 Identities=17% Similarity=0.300 Sum_probs=124.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEEEe
Q 008254 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITS 95 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIiLS 95 (572)
|||+||++..+..|...|+..||.+..+.++.+++..+.. ..||+||+|+.||+ ++|+++++.++ ++|||++|
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~-~~g~~~~~~l~~~~~~~~iivls 77 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK--DDYDLIILDVMLPG-MDGWQILQTLRRSGKQTPVLFLT 77 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHccCCCCcEEEEE
Confidence 6899999999999999999999999999999999999988 78999999999999 99999999986 68999999
Q ss_pred CCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCCCc-------------------c
Q 008254 96 NIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSA-------------------L 156 (572)
Q Consensus 96 ~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~~~-------------------~ 156 (572)
+..+.....+++. .||++|+.||++.++|..+++.++++........ .
T Consensus 78 ~~~~~~~~~~~~~-------------~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (218)
T TIGR01387 78 ARDSVADKVKGLD-------------LGADDYLVKPFSFSELLARVRTLLRRSHSLNSTVLEIADLRMDSVRHRVSRGNI 144 (218)
T ss_pred cCCCHHHHHHHHH-------------cCCCeEEECCCCHHHHHHHHHHHhcccccCCCCeEEECCEEEEcccCEEEECCE
Confidence 9999999999998 9999999999999999999998887643211110 0
Q ss_pred cCCCChhHHHHHHHHHhcchhhh
Q 008254 157 SDSLKPVKESVVSMLHLKLENGE 179 (572)
Q Consensus 157 ~~sLt~RE~eVL~ll~~~len~e 179 (572)
...||++|.+++.++..+.....
T Consensus 145 ~~~Lt~~E~~il~~l~~~~~~~~ 167 (218)
T TIGR01387 145 RITLTRKEFQLLWLLMRRTGEVL 167 (218)
T ss_pred EEeCCHHHHHHHHHHHhCCCeeE
Confidence 12499999999999988744333
No 33
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.62 E-value=3.1e-15 Score=146.90 Aligned_cols=148 Identities=11% Similarity=0.128 Sum_probs=122.1
Q ss_pred HHHHHHHHHHh---CCCEEEEECCHHHHHHHhhcCCCCeeEEE---EeCCCCCCCChHHHHHHhc----CCcEEEEeCCC
Q 008254 29 AAAELKFKLEA---MDYIVSTFYNENEALSAFSDKPENFHVAI---VEVTTSNTDGSFKFLETAK----DLPTIITSNIH 98 (572)
Q Consensus 29 ~~~~L~~lL~~---~gy~V~ta~~a~EAL~~L~e~~~~pDLVI---vDv~mPd~mdG~~lLe~Ir----dlPVIiLS~~~ 98 (572)
.+.+|+.+|.. .+|.|.++.+++++++.+.. ..||++| +|+.||+ ++|++++++++ +++||++|+..
T Consensus 2 ~r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~--~~pd~vl~dl~d~~mp~-~~Gl~~~~~l~~~~p~~~iIvlt~~~ 78 (207)
T PRK11475 2 SSIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSR--ISFSAVIFSLSAMRSER-REGLSCLTELAIKFPRMRRLVIADDD 78 (207)
T ss_pred chHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhcc--CCCCEEEeeccccCCCC-CCHHHHHHHHHHHCCCCCEEEEeCCC
Confidence 36788889975 35667799999999999987 7899998 7889999 99999999996 79999999987
Q ss_pred ChHHHHHHH-HHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCC-------CcccCCCChhHHHHHHH
Q 008254 99 CLSTMMKCI-AIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG-------SALSDSLKPVKESVVSM 170 (572)
Q Consensus 99 d~~~~~kai-~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~-------~~~~~sLt~RE~eVL~l 170 (572)
+...+..++ . .||++||.|+.+.++|.++|+.++++...... ......||+||++|+++
T Consensus 79 ~~~~~~~~~~~-------------~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~~~~~~~~~~~~~~~~~LT~RE~eVL~l 145 (207)
T PRK11475 79 IEARLIGSLSP-------------SPLDGVLSKASTLEILQQELFLSLNGVRQATDRLNNQWYINQSRMLSPTEREILRF 145 (207)
T ss_pred CHHHHHHHHHH-------------cCCeEEEecCCCHHHHHHHHHHHHCCCcccCHHHHHHhhccCcCCCCHHHHHHHHH
Confidence 776666665 5 99999999999999999999998875321110 01134699999999999
Q ss_pred HHhcchhhhhhccccccccccc
Q 008254 171 LHLKLENGESKNEKSENTEYVL 192 (572)
Q Consensus 171 l~~~len~e~~~e~s~~~e~v~ 192 (572)
+..|..|++...+..+...+|.
T Consensus 146 l~~G~snkeIA~~L~iS~~TV~ 167 (207)
T PRK11475 146 MSRGYSMPQIAEQLERNIKTIR 167 (207)
T ss_pred HHCCCCHHHHHHHHCCCHHHHH
Confidence 9999999999988887776664
No 34
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.62 E-value=8.3e-15 Score=143.13 Aligned_cols=158 Identities=11% Similarity=0.045 Sum_probs=127.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---EEEEECCHHHHHHHhhcCCCCeeEEEEeCC--CCCCCChHHHHHHhc----C
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDY---IVSTFYNENEALSAFSDKPENFHVAIVEVT--TSNTDGSFKFLETAK----D 88 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy---~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~--mPd~mdG~~lLe~Ir----d 88 (572)
|.|+||||++.++..++.+|+..++ .|..+.++.++++.+.. ..|||||+|+. +++ .+|.++++.++ +
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~--~~pDlvLlDl~~~l~~-~~g~~~i~~i~~~~p~ 77 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS--LRPSVVFINEDCFIHD-ASNSQRIKQIINQHPN 77 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc--cCCCEEEEeCcccCCC-CChHHHHHHHHHHCCC
Confidence 4699999999999999999987653 34589999999999887 78999999966 888 78999999986 6
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCcc-EEEeCCCCHHHHHHHHHHHHHHHHhcCCCc--ccCCCChhHH
Q 008254 89 LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAV-EFLRKPLSEDKLRNLWQHVVHKAFNAGGSA--LSDSLKPVKE 165 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~-dYL~KPvs~eeL~~~~q~Vlrr~~~~~~~~--~~~sLt~RE~ 165 (572)
++||++|+..+..... ++. .|+. .|+.|+.+.++|..+++.+..+........ ....||+||+
T Consensus 78 ~~iivlt~~~~~~~~~-~~~-------------~~~~~~~~~K~~~~~~L~~aI~~v~~g~~~~~~~~~~~~~~LT~RE~ 143 (207)
T PRK15411 78 TLFIVFMAIANIHFDE-YLL-------------VRKNLLISSKSIKPESLDDLLGDILKKETTITSFLNLPTLSLSRTES 143 (207)
T ss_pred CeEEEEECCCchhHHH-HHH-------------HHhhceeeeccCCHHHHHHHHHHHHcCCcccCccccCCcccCCHHHH
Confidence 8999999987765543 444 4444 389999999999999999887644221111 1125999999
Q ss_pred HHHHHHHhcchhhhhhccccccccccc
Q 008254 166 SVVSMLHLKLENGESKNEKSENTEYVL 192 (572)
Q Consensus 166 eVL~ll~~~len~e~~~e~s~~~e~v~ 192 (572)
+|++++..|..|++...+..+...+|.
T Consensus 144 eVL~lla~G~snkeIA~~L~iS~~TVk 170 (207)
T PRK15411 144 SMLRMWMAGQGTIQISDQMNIKAKTVS 170 (207)
T ss_pred HHHHHHHcCCCHHHHHHHcCCCHHHHH
Confidence 999999999999999988887776664
No 35
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.62 E-value=2.5e-14 Score=137.33 Aligned_cols=149 Identities=16% Similarity=0.236 Sum_probs=127.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVI 92 (572)
..+||||||+...+..|...|+..||.+..+.++.+++..+.. ..||+||+|+.|++ ++|+++++.++ ++|||
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~-~~g~~~~~~lr~~~~~~pii 81 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR--ESFHLMVLDLMLPG-EDGLSICRRLRSQNNPTPII 81 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCCEE
Confidence 4689999999999999999999999999999999999999988 78999999999999 99999999986 68999
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhc-------CCCcc---------
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNA-------GGSAL--------- 156 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~-------~~~~~--------- 156 (572)
++++..+......++. .||++||.||++.++|..+++.++++.... .....
T Consensus 82 ~ls~~~~~~~~~~~l~-------------~Ga~~~l~kP~~~~~L~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (239)
T PRK09468 82 MLTAKGEEVDRIVGLE-------------IGADDYLPKPFNPRELLARIRAVLRRQAPELPGAPSQEEEVIAFGKFKLNL 148 (239)
T ss_pred EEECCCcHHHHHHHHh-------------cCCCeEEECCCCHHHHHHHHHHHhccccccccccccCCCceEEECcEEEEc
Confidence 9999999998888888 999999999999999999999988764210 00000
Q ss_pred ----------cCCCChhHHHHHHHHHhcchhhhhh
Q 008254 157 ----------SDSLKPVKESVVSMLHLKLENGESK 181 (572)
Q Consensus 157 ----------~~sLt~RE~eVL~ll~~~len~e~~ 181 (572)
.-.||++|.++|.++........+.
T Consensus 149 ~~~~~~~~~~~i~Lt~~E~~lL~~L~~~~~~~~sr 183 (239)
T PRK09468 149 GTRELFRGDEPMPLTTGEFAVLKALVSHPREPLSR 183 (239)
T ss_pred CcCEEEECCEEeecCHHHHHHHHHHHhCCCccCcH
Confidence 1248999999999988755444433
No 36
>PLN03029 type-a response regulator protein; Provisional
Probab=99.61 E-value=3.8e-14 Score=139.63 Aligned_cols=120 Identities=22% Similarity=0.339 Sum_probs=107.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCC------------------CCeeEEEEeCCCCCCC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKP------------------ENFHVAIVEVTTSNTD 77 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~------------------~~pDLVIvDv~mPd~m 77 (572)
..++||||||+...+..+..+|+..||.|.++.++.+|+..+.... ..+||||+|+.||+ +
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~-~ 85 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPG-M 85 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCC-C
Confidence 3589999999999999999999999999999999999999986511 13679999999999 9
Q ss_pred ChHHHHHHhc------CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 78 GSFKFLETAK------DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 78 dG~~lLe~Ir------dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
+|+++++.++ ++|||++|+........+|+. .||++||.||++..+|..++.++++...
T Consensus 86 ~G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~-------------~Ga~dyl~KP~~~~~L~~l~~~~~~~~~ 150 (222)
T PLN03029 86 TGYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLE-------------EGAEEFFLKPVQLSDLNRLKPHMMKTKS 150 (222)
T ss_pred CHHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHH-------------hCchheEECCCCHHHHHHHHHHHHHHHH
Confidence 9999999986 589999999999999999999 9999999999999999888888776543
No 37
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.61 E-value=3.2e-14 Score=137.03 Aligned_cols=147 Identities=12% Similarity=0.135 Sum_probs=124.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcEEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPVIiL 94 (572)
.+||||||+...+..|...|+..||.+..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ ..|+|++
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~-~~g~~~~~~ir~~~~~pii~l 78 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR--EQPDLVLLDIMLPG-KDGMTICRDLRPKWQGPIVLL 78 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCEEEE
Confidence 589999999999999999999999999999999999999988 78999999999999 99999999997 6899999
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcC------------CCcc------
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAG------------GSAL------ 156 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~------------~~~~------ 156 (572)
++..+......++. .||++||.||++.++|..+++.++++..... ....
T Consensus 79 ~~~~~~~~~~~~~~-------------~Ga~d~l~kP~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (240)
T PRK10701 79 TSLDSDMNHILALE-------------MGACDYILKTTPPAVLLARLRLHLRQNEQATQTKGLQETSLTPYKALHFGTLT 145 (240)
T ss_pred ECCCCHHHHHHHHH-------------cCCCEEEECCCCHHHHHHHHHHHHhccccccccccccccccccccceEecCEE
Confidence 99888888888888 9999999999999999999998887642210 0000
Q ss_pred -------------cCCCChhHHHHHHHHHhcchhhhh
Q 008254 157 -------------SDSLKPVKESVVSMLHLKLENGES 180 (572)
Q Consensus 157 -------------~~sLt~RE~eVL~ll~~~len~e~ 180 (572)
.-.||+.|.++|..+......-.+
T Consensus 146 ~~~~~~~~~~~~~~i~Lt~~E~~lL~~l~~~~~~v~s 182 (240)
T PRK10701 146 IDPVNRQVTLAGEEISLSTADFDLLWELATHAGQIMD 182 (240)
T ss_pred EEcccCEEEECCeEeecCHHHHHHHHHHHhCCCccCc
Confidence 224899999999888775544433
No 38
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.60 E-value=4.5e-14 Score=136.90 Aligned_cols=148 Identities=16% Similarity=0.209 Sum_probs=122.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcEEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPVIiL 94 (572)
.+||||||++..+..|...|+..||.|..+.++.+++..+.. ..||+||+|+.||+ ++|+++++.++ .+|+|++
T Consensus 2 ~~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~-~~g~~l~~~i~~~~~~pii~l 78 (241)
T PRK13856 2 KHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS--ETVDVVVVDLNLGR-EDGLEIVRSLATKSDVPIIII 78 (241)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCcEEEE
Confidence 389999999999999999999999999999999999999988 78999999999999 99999999987 6999999
Q ss_pred eCCC-ChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcC----CC---------------
Q 008254 95 SNIH-CLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAG----GS--------------- 154 (572)
Q Consensus 95 S~~~-d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~----~~--------------- 154 (572)
|+.. +.....+++. .||++||.||++.++|..+++.++++..... ..
T Consensus 79 t~~~~~~~~~~~~l~-------------~Ga~~yl~kP~~~~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (241)
T PRK13856 79 SGDRLEEADKVVALE-------------LGATDFIAKPFGTREFLARIRVALRVRPNVVRTKDRRSFCFADWTLNLRQRR 145 (241)
T ss_pred ECCCCcHHHHHHHHh-------------cCcCeEEeCCCCHHHHHHHHHHHHhhcccccccccccceecCceEEehhhCE
Confidence 9854 6666778888 9999999999999999999999887642100 00
Q ss_pred -----cccCCCChhHHHHHHHHHhcchhhhhh
Q 008254 155 -----ALSDSLKPVKESVVSMLHLKLENGESK 181 (572)
Q Consensus 155 -----~~~~sLt~RE~eVL~ll~~~len~e~~ 181 (572)
...-.||+.|..+|..+........+.
T Consensus 146 ~~~~~~~~i~Lt~~E~~lL~~l~~~~~~v~sr 177 (241)
T PRK13856 146 LISEAGGEVKLTAGEFNLLVAFLEKPRDVLSR 177 (241)
T ss_pred EEeCCCcEeecCHHHHHHHHHHHhCCCCccCH
Confidence 001258899999988877654444433
No 39
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.60 E-value=5.4e-14 Score=131.69 Aligned_cols=146 Identities=16% Similarity=0.305 Sum_probs=124.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIi 93 (572)
|+||++||++..+..+...|+..++.+..+.++.+++..+.. ..||+||+|+.+++ ++|+++++.++ ++|+|+
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~vild~~~~~-~~~~~~~~~i~~~~~~~~ii~ 77 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS--EMYALAVLDINMPG-MDGLEVLQRLRKRGQTLPVLL 77 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCC-CcHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999999999999999999998887 78999999999999 99999999886 689999
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCCCc------------------
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSA------------------ 155 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~~~------------------ 155 (572)
+|...+.....+++. .||++|+.||++.++|..+++.++++........
T Consensus 78 lt~~~~~~~~~~~~~-------------~g~~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (221)
T PRK15479 78 LTARSAVADRVKGLN-------------VGADDYLPKPFELEELDARLRALLRRSAGQVQEVQQLGELIFHDEGYFLLQG 144 (221)
T ss_pred EECCCCHHHHHHHHH-------------cCCCeeEeCCCCHHHHHHHHHHHHhhhccCcCccEEECCEEEccCCeEEECC
Confidence 999999998889998 9999999999999999999998887643211110
Q ss_pred ccCCCChhHHHHHHHHHhcchhhh
Q 008254 156 LSDSLKPVKESVVSMLHLKLENGE 179 (572)
Q Consensus 156 ~~~sLt~RE~eVL~ll~~~len~e 179 (572)
....||++|.+++.++..+.....
T Consensus 145 ~~~~Lt~~E~~il~~l~~~~~~~~ 168 (221)
T PRK15479 145 QPLALTPREQALLTVLMYRRTRPV 168 (221)
T ss_pred EEEecCHHHHHHHHHHHhCCCCcC
Confidence 012499999999999987654433
No 40
>PRK11173 two-component response regulator; Provisional
Probab=99.60 E-value=3e-14 Score=137.26 Aligned_cols=116 Identities=13% Similarity=0.256 Sum_probs=108.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcEEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTII 93 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPVIi 93 (572)
..+||||||+...+..+...|+..||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ .+|+|+
T Consensus 3 ~~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~-~~g~~~~~~lr~~~~~pii~ 79 (237)
T PRK11173 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--NDINLVIMDINLPG-KNGLLLARELREQANVALMF 79 (237)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEcCCCCC-CCHHHHHHHHhcCCCCCEEE
Confidence 4689999999999999999999999999999999999999988 78999999999999 99999999997 699999
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
+|+..+......++. .||++||.||++.++|...++.++++.
T Consensus 80 lt~~~~~~~~~~~~~-------------~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 80 LTGRDNEVDKILGLE-------------IGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred EECCCCHHHHHHHHH-------------CCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 999999888888888 999999999999999999998888763
No 41
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.60 E-value=8.4e-15 Score=144.62 Aligned_cols=158 Identities=15% Similarity=0.132 Sum_probs=122.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHH-HHhc----CCc
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFL-ETAK----DLP 90 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lL-e~Ir----dlP 90 (572)
.+.+|+||||++..+.+|+.+|+..--.+..+.++.+|+..+. .|||||+|+.||+ ++|++++ +.++ +++
T Consensus 9 ~~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~-~~G~~~~~~~i~~~~p~~~ 83 (216)
T PRK10100 9 HGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDIS----SGSIILLDMMEAD-KKLIHYWQDTLSRKNNNIK 83 (216)
T ss_pred cCceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccCC----CCCEEEEECCCCC-ccHHHHHHHHHHHhCCCCc
Confidence 3456999999999999999999844234557889999998753 3899999999999 9999986 4454 689
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH-----------hcC-----CC
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF-----------NAG-----GS 154 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~-----------~~~-----~~ 154 (572)
||++|...+ ....++. ...||.+||.|..+.++|..+|+.+.++.. ... ..
T Consensus 84 vvvlt~~~~--~~~~~~~-----------~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~~~~~~~~l~~~~~~~~~~~ 150 (216)
T PRK10100 84 ILLLNTPED--YPYREIE-----------NWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNS 150 (216)
T ss_pred EEEEECCch--hHHHHHH-----------HhcCCeEEEECCCCHHHHHHHHHHHHcCCcccCHHHHHHHHHhhcccccCC
Confidence 999999876 3445554 014999999999999999999998876421 110 01
Q ss_pred cccCCCChhHHHHHHHHHhcchhhhhhcccccccccc
Q 008254 155 ALSDSLKPVKESVVSMLHLKLENGESKNEKSENTEYV 191 (572)
Q Consensus 155 ~~~~sLt~RE~eVL~ll~~~len~e~~~e~s~~~e~v 191 (572)
.....||+||++|+.++..|..+++...+......+|
T Consensus 151 ~~~~~Lt~rE~~Vl~l~~~G~s~~eIA~~L~iS~~TV 187 (216)
T PRK10100 151 TESALLTHREKEILNKLRIGASNNEIARSLFISENTV 187 (216)
T ss_pred CccCCCCHHHHHHHHHHHcCCCHHHHHHHhCCCHHHH
Confidence 1134599999999999999999999987766655544
No 42
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.59 E-value=7.8e-14 Score=127.69 Aligned_cols=160 Identities=15% Similarity=0.169 Sum_probs=132.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~-gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dl 89 (572)
++++|||+||+...+..+...|... ++.++ .+.++.+++..+.. ..||+||+|+.+++ ++|+++++.++ .+
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~-~~~~~~~~~l~~~~~~~ 78 (211)
T PRK15369 2 KNYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ--LEPDIVILDLGLPG-MNGLDVIPQLHQRWPAM 78 (211)
T ss_pred CccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHHHCCCC
Confidence 4589999999999999999999875 57654 88999999998887 78999999999999 99999999886 68
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHh-----------cC---CCc
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN-----------AG---GSA 155 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~-----------~~---~~~ 155 (572)
|+|++|+..+......++. .|+.+|+.||++.++|..+++.++++... .. ...
T Consensus 79 ~ii~ls~~~~~~~~~~~~~-------------~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (211)
T PRK15369 79 NILVLTARQEEHMASRTLA-------------AGALGYVLKKSPQQILLAAIQTVAVGKRYIDPALNREAILALLNADDT 145 (211)
T ss_pred cEEEEeCCCCHHHHHHHHH-------------hCCCEEEeCCCCHHHHHHHHHHHHCCCceeCHHHHHHHHHHhccCCCC
Confidence 9999999999888888888 99999999999999999999887653210 00 011
Q ss_pred ccCCCChhHHHHHHHHHhcchhhhhhcccccccccc
Q 008254 156 LSDSLKPVKESVVSMLHLKLENGESKNEKSENTEYV 191 (572)
Q Consensus 156 ~~~sLt~RE~eVL~ll~~~len~e~~~e~s~~~e~v 191 (572)
....||++|++|++++..+..+++.......+..+|
T Consensus 146 ~~~~lt~~e~~vl~l~~~g~~~~~Ia~~l~~s~~tv 181 (211)
T PRK15369 146 NPPLLTPRERQILKLITEGYTNRDIAEQLSISIKTV 181 (211)
T ss_pred cccCCCHHHHHHHHHHHCCCCHHHHHHHhCCCHHHH
Confidence 134599999999999999998888877665554444
No 43
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.58 E-value=4.5e-14 Score=128.75 Aligned_cols=152 Identities=23% Similarity=0.326 Sum_probs=129.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
...+||||||++..+..+...|+..+|.+..+.++.+++..+.. ..+|+||+|+.+++ ++|+++++.++ .+|+
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~ii~d~~~~~-~~~~~~~~~l~~~~~~~~i 78 (202)
T PRK09390 2 DKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG--LRFGCVVTDVRMPG-IDGIELLRRLKARGSPLPV 78 (202)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc--CCCCEEEEeCCCCC-CcHHHHHHHHHhcCCCCCE
Confidence 45789999999999999999999999999999999999999988 78999999999999 99999999886 6899
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCCC--------cccCCCChh
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGS--------ALSDSLKPV 163 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~~--------~~~~sLt~R 163 (572)
|+++...+......++. .|+.+|+.||++.++|...++.++.+....... .....|+++
T Consensus 79 i~l~~~~~~~~~~~~~~-------------~g~~~~l~~p~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 145 (202)
T PRK09390 79 IVMTGHGDVPLAVEAMK-------------LGAVDFIEKPFEDERLIGAIERALAQAPEAAKSEAVAADIRARIASLSER 145 (202)
T ss_pred EEEECCCCHHHHHHHHH-------------cChHHHhhCCCCHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHhhhhh
Confidence 99999998888888888 999999999999999999998887753211110 113468999
Q ss_pred HHHHHHHHHhcchhhhhhcc
Q 008254 164 KESVVSMLHLKLENGESKNE 183 (572)
Q Consensus 164 E~eVL~ll~~~len~e~~~e 183 (572)
+++++.++..+..+.+....
T Consensus 146 e~~vl~~~~~~~~~~~ia~~ 165 (202)
T PRK09390 146 ERQVMDGLVAGLSNKVIARD 165 (202)
T ss_pred HHHHHHHHHccCchHHHHHH
Confidence 99999987777766665543
No 44
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.58 E-value=1.3e-13 Score=131.42 Aligned_cols=141 Identities=13% Similarity=0.224 Sum_probs=122.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcEEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPVIiL 94 (572)
.+||||||+...+..|..+|+..||.+..+.++.+|+..+.. ..||+||+|+.|++ ++|+++++.++ .+|+|++
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~-~~g~~~~~~l~~~~~~pii~l 87 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ--TPPDLILLDLMLPG-TDGLTLCREIRRFSDIPIVMV 87 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCEEEE
Confidence 489999999999999999999999999999999999999987 78999999999999 89999999887 7999999
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCC--------C------------
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG--------S------------ 154 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~--------~------------ 154 (572)
++..+......++. .||++|+.||++.++|..+++.++++...... .
T Consensus 88 ~~~~~~~~~~~~~~-------------~ga~~~l~kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (240)
T PRK10710 88 TAKIEEIDRLLGLE-------------IGADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLIIDESRFQASW 154 (240)
T ss_pred EcCCCHHHHHHHHh-------------cCCCeEEECCCCHHHHHHHHHHHHhhccccCCCccceEeCCEEEEcCceEEEE
Confidence 99988888888888 99999999999999999999988875422111 0
Q ss_pred -cccCCCChhHHHHHHHHHhc
Q 008254 155 -ALSDSLKPVKESVVSMLHLK 174 (572)
Q Consensus 155 -~~~~sLt~RE~eVL~ll~~~ 174 (572)
.....||++|.+++.++..+
T Consensus 155 ~~~~~~Lt~~e~~il~~l~~~ 175 (240)
T PRK10710 155 RGKMLDLTPAEFRLLKTLSHE 175 (240)
T ss_pred CCEEeecCHHHHHHHHHHHhC
Confidence 00225999999999999874
No 45
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.57 E-value=1.2e-13 Score=128.26 Aligned_cols=160 Identities=13% Similarity=0.164 Sum_probs=132.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~-gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dl 89 (572)
...+||||||++..+..|..+|... ++.++ .+.++.+++..+.. ..||+||+|+.+++ ++|+++++.++ +.
T Consensus 5 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~l~~-~~~~~~~~~l~~~~~~~ 81 (216)
T PRK10651 5 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPG-MNGLETLDKLREKSLSG 81 (216)
T ss_pred cceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCC-CcHHHHHHHHHHhCCCC
Confidence 4579999999999999999999764 67654 78999999999988 78999999999999 89999999886 68
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHh--------------cC---
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN--------------AG--- 152 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~--------------~~--- 152 (572)
|+|+++...+......++. .|+++|+.||++.++|...++.++++... ..
T Consensus 82 ~vi~l~~~~~~~~~~~~~~-------------~g~~~~i~k~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (216)
T PRK10651 82 RIVVFSVSNHEEDVVTALK-------------RGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRAT 148 (216)
T ss_pred cEEEEeCCCCHHHHHHHHH-------------cCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHHhhcccCc
Confidence 9999999988888888888 99999999999999999999988754210 00
Q ss_pred CCcccCCCChhHHHHHHHHHhcchhhhhhcccccccccc
Q 008254 153 GSALSDSLKPVKESVVSMLHLKLENGESKNEKSENTEYV 191 (572)
Q Consensus 153 ~~~~~~sLt~RE~eVL~ll~~~len~e~~~e~s~~~e~v 191 (572)
.......||+||.+|++++..+..+++...+..++..+|
T Consensus 149 ~~~~~~~Lt~rE~~vl~~l~~g~~~~~ia~~l~is~~tV 187 (216)
T PRK10651 149 TERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTV 187 (216)
T ss_pred cccccccCCHHHHHHHHHHHcCCCHHHHHHHcCCCHHHH
Confidence 001123499999999999999988888877655554443
No 46
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.55 E-value=2.7e-13 Score=125.51 Aligned_cols=154 Identities=15% Similarity=0.110 Sum_probs=128.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCc
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~-~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlP 90 (572)
.++||||||+...+..+...|+. .+|.+. .+.++.+++..+.. ..||+||+|..+++ ++|+++++.++ ..|
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~-~~~~~~~~~l~~~~~~~~ 82 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR--LDPDVILLDLNMKG-MSGLDTLNALRRDGVTAQ 82 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCC-CcHHHHHHHHHHhCCCCe
Confidence 36899999999999999999986 578775 79999999999887 78999999999999 99999999886 589
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH----------hc-----CCCc
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF----------NA-----GGSA 155 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~----------~~-----~~~~ 155 (572)
+|+++...+......++. .|+++|+.||++.++|..+++.++++.. .. ....
T Consensus 83 ii~l~~~~~~~~~~~~~~-------------~g~~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (215)
T PRK10403 83 IIILTVSDASSDVFALID-------------AGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEED 149 (215)
T ss_pred EEEEeCCCChHHHHHHHH-------------cCCCeEEecCCCHHHHHHHHHHHhCCCeecCHHHHHHHHhhhccCCCCc
Confidence 999999888888888888 9999999999999999999987654310 00 0111
Q ss_pred ccCCCChhHHHHHHHHHhcchhhhhhccccc
Q 008254 156 LSDSLKPVKESVVSMLHLKLENGESKNEKSE 186 (572)
Q Consensus 156 ~~~sLt~RE~eVL~ll~~~len~e~~~e~s~ 186 (572)
....||++|.+++.++..+..+++.......
T Consensus 150 ~~~~Lt~~e~~vl~~~~~g~s~~~ia~~l~~ 180 (215)
T PRK10403 150 PFSVLTERELDVLHELAQGLSNKQIASVLNI 180 (215)
T ss_pred ccccCCHHHHHHHHHHHCCCCHHHHHHHcCC
Confidence 1246999999999999999888887765543
No 47
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.54 E-value=1e-13 Score=149.62 Aligned_cols=118 Identities=17% Similarity=0.331 Sum_probs=112.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------CC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------dl 89 (572)
...+||||||+...+..|+.+|...||+|..+.++.+|+..+.+ ..||+||+|+.||+ +||++++.++| ++
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e--~~~dlil~d~~mp~-~dg~el~~~lr~~~~t~~i 207 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAE--LPPDLVLLDANMPD-MDGLELCTRLRQLERTRDI 207 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhc--CCCcEEEEecCCCc-cCHHHHHHHHhcccccccc
Confidence 56899999999999999999999999999999999999999999 79999999999999 99999999987 79
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
|||++|+.++...+.+|+. .|+.|||.||+...+|..+++..+++..
T Consensus 208 pii~~~~~~d~~~~~~Af~-------------~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~ 254 (435)
T COG3706 208 PIILLSSKDDDELVVRAFE-------------LGVNDYITKPIEEGELRARLRRQLRRKR 254 (435)
T ss_pred cEEEEecccchHHHHHHHH-------------cCCcceEecCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999 9999999999999999999988888765
No 48
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.53 E-value=5.9e-14 Score=132.42 Aligned_cols=108 Identities=22% Similarity=0.364 Sum_probs=103.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEEE
Q 008254 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIIT 94 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIiL 94 (572)
..||||||..++..|.+.+++-||.|.++.+.+|||..++. ..|..+++|+.|.+ .+|+.+++.++ |..||++
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art--~~PayAvvDlkL~~-gsGL~~i~~lr~~~~d~rivvL 87 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAART--APPAYAVVDLKLGD-GSGLAVIEALRERRADMRIVVL 87 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhc--CCCceEEEEeeecC-CCchHHHHHHHhcCCcceEEEE
Confidence 69999999999999999999999999999999999999999 89999999999999 99999999986 8999999
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHH
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQ 142 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q 142 (572)
|++....+.+.|++ .|||+||.||.+.+++..++.
T Consensus 88 TGy~sIATAV~AvK-------------lGA~~YLaKPAdaDdi~aAl~ 122 (182)
T COG4567 88 TGYASIATAVEAVK-------------LGACDYLAKPADADDILAALL 122 (182)
T ss_pred ecchHHHHHHHHHH-------------hhhhhhcCCCCChHHHHHHHh
Confidence 99999999999999 999999999999999988554
No 49
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.48 E-value=4.9e-13 Score=156.21 Aligned_cols=117 Identities=18% Similarity=0.325 Sum_probs=110.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
.+++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ |+|+++++.++ .+||
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~--~~~DlVl~D~~mP~-mdG~el~~~ir~~~~~~pI 876 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK--NHIDIVLTDVNMPN-MDGYRLTQRLRQLGLTLPV 876 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCC-CCHHHHHHHHHhcCCCCCE
Confidence 46799999999999999999999999999999999999999998 78999999999999 99999999997 6999
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
|++|+....+...+|+. .|+++||.||++.++|..++.++.++.
T Consensus 877 I~lTa~~~~~~~~~~~~-------------aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 877 IGVTANALAEEKQRCLE-------------AGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EEEECCCCHHHHHHHHH-------------CCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999 999999999999999999888776654
No 50
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.48 E-value=4.8e-13 Score=153.09 Aligned_cols=116 Identities=16% Similarity=0.248 Sum_probs=108.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-------
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------- 87 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------- 87 (572)
+.+++||||||++..+..+..+|+..||.|.++.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++
T Consensus 688 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dlil~D~~mp~-~~G~~~~~~ir~~~~~~~ 764 (921)
T PRK15347 688 PWQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQ--HRFDLVLMDIRMPG-LDGLETTQLWRDDPNNLD 764 (921)
T ss_pred cccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhchhhcC
Confidence 346799999999999999999999999999999999999999998 78999999999999 99999999885
Q ss_pred -CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 88 -DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 88 -dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
.+|||++|+..+.....+|+. .|+++||.||++.++|..++..++.
T Consensus 765 ~~~pii~lt~~~~~~~~~~~~~-------------~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 765 PDCMIVALTANAAPEEIHRCKK-------------AGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred CCCcEEEEeCCCCHHHHHHHHH-------------CCCCEEEECCCCHHHHHHHHHHHHh
Confidence 389999999999999999999 9999999999999999998877654
No 51
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.48 E-value=4.1e-13 Score=153.41 Aligned_cols=115 Identities=15% Similarity=0.212 Sum_probs=107.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------CC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------dl 89 (572)
..++||||||++..+..++.+|+..||.|.++.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++
T Consensus 666 ~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~-~~g~~~~~~lr~~~~~~~~ 742 (919)
T PRK11107 666 LPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQ--RPFDLILMDIQMPG-MDGIRACELIRQLPHNQNT 742 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CcHHHHHHHHHhcccCCCC
Confidence 46799999999999999999999999999999999999999998 78999999999999 99999999986 58
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
|||++|+..+.....+|+. .|+++||.||++.++|..++..++.
T Consensus 743 pii~lt~~~~~~~~~~~~~-------------~G~~~~l~KP~~~~~L~~~l~~~~~ 786 (919)
T PRK11107 743 PIIAVTAHAMAGERERLLS-------------AGMDDYLAKPIDEAMLKQVLLRYKP 786 (919)
T ss_pred CEEEEeCCCCHHHHHHHHH-------------cCCCeEeeCCCCHHHHHHHHHHHcc
Confidence 9999999999999999999 9999999999999999997776654
No 52
>PRK15115 response regulator GlrR; Provisional
Probab=99.47 E-value=9.1e-13 Score=140.53 Aligned_cols=116 Identities=21% Similarity=0.355 Sum_probs=108.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVI 92 (572)
..+||||||++..+..|...|+..||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ ++|||
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~--~~~dlvilD~~lp~-~~g~~ll~~l~~~~~~~pvI 81 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR--EKVDLVISDLRMDE-MDGMQLFAEIQKVQPGMPVI 81 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCC-CCHHHHHHHHHhcCCCCcEE
Confidence 4799999999999999999999999999999999999999988 78999999999999 99999999886 69999
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
++|+..+.....+++. .||++||.||++.++|...++.+++..
T Consensus 82 vlt~~~~~~~~~~a~~-------------~Ga~~~l~KP~~~~~L~~~l~~~~~~~ 124 (444)
T PRK15115 82 ILTAHGSIPDAVAATQ-------------QGVFSFLTKPVDRDALYKAIDDALEQS 124 (444)
T ss_pred EEECCCCHHHHHHHHh-------------cChhhhccCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999 999999999999999999999888753
No 53
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.47 E-value=9.3e-13 Score=130.22 Aligned_cols=115 Identities=20% Similarity=0.240 Sum_probs=103.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------C
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------D 88 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~-gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------d 88 (572)
.++||||||+...+..+..+|... ++.++ .+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~--~~~DlvllD~~mp~-~dG~~~l~~i~~~~~~~~ 78 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE--QQPDVVVLDIIMPH-LDGIGVLEKLNEIELSAR 78 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHhhccccC
Confidence 479999999999999999999864 56654 79999999999998 78999999999999 99999999986 2
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 89 LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
+|||++|+..+.....+++. .|+++||.||++.++|...+++++.+
T Consensus 79 ~~iI~lt~~~~~~~~~~~~~-------------~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 79 PRVIMLSAFGQEKITQRAVA-------------LGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred CeEEEEeCCCCHHHHHHHHH-------------CCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 88999999999998899998 99999999999999999988877653
No 54
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.47 E-value=6.5e-13 Score=140.93 Aligned_cols=117 Identities=21% Similarity=0.386 Sum_probs=109.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
.+++||||||+...+..|..+|+..||.|.++.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ ++||
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~DlvilD~~m~~-~~G~~~~~~ir~~~~~~~v 80 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE--QVFDLVLCDVRMAE-MDGIATLKEIKALNPAIPV 80 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCeE
Confidence 45899999999999999999999999999999999999999988 78999999999999 99999999986 6899
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
|++|++.+.+.+.+++. .||.+||.||++.++|...++.++.+.
T Consensus 81 i~lt~~~~~~~~~~a~~-------------~ga~~~l~Kp~~~~~L~~~l~~~l~~~ 124 (441)
T PRK10365 81 LIMTAYSSVETAVEALK-------------TGALDYLIKPLDFDNLQATLEKALAHT 124 (441)
T ss_pred EEEECCCCHHHHHHHHH-------------hhhHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999998887653
No 55
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.47 E-value=7.4e-13 Score=141.35 Aligned_cols=117 Identities=19% Similarity=0.316 Sum_probs=109.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CC
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dl 89 (572)
|+...+||||||+...+..|...|+..||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ .+
T Consensus 1 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlillD~~~p~-~~g~~ll~~i~~~~~~~ 77 (457)
T PRK11361 1 MTAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD--IHPDVVLMDIRMPE-MDGIKALKEMRSHETRT 77 (457)
T ss_pred CCCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCC
Confidence 4566799999999999999999999999999999999999999988 78999999999999 99999999886 69
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
|||++|+..+.+....++. .|+++||.||++.++|...++.++.
T Consensus 78 pvI~lt~~~~~~~~~~a~~-------------~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 78 PVILMTAYAEVETAVEALR-------------CGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred CEEEEeCCCCHHHHHHHHH-------------CCccEEEecccCHHHHHHHHhhhcc
Confidence 9999999999999999999 9999999999999999998887665
No 56
>PRK14084 two-component response regulator; Provisional
Probab=99.46 E-value=1.3e-12 Score=127.25 Aligned_cols=112 Identities=15% Similarity=0.342 Sum_probs=98.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-C-EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMD-Y-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~g-y-~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
++||||||++..+..|..+|+..+ + .+.++.++.+|+..+.+ ..+|++++|+.||+ ++|+++++.++ ..+|
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~--~~~dlv~lDi~m~~-~~G~~~~~~i~~~~~~~~i 77 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI--NQYDIIFLDINLMD-ESGIELAAKIQKMKEPPAI 77 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCEE
Confidence 589999999999999999999865 4 56789999999999988 78999999999999 99999999997 4678
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
|++|++.+ ...+++. .||.+||.||++.++|..+++.+.++
T Consensus 78 I~~t~~~~--~~~~~~~-------------~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (246)
T PRK14084 78 IFATAHDQ--FAVKAFE-------------LNATDYILKPFEQKRIEQAVNKVRAT 118 (246)
T ss_pred EEEecChH--HHHHHHh-------------cCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 88887653 4566777 99999999999999999998887654
No 57
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.46 E-value=1.4e-12 Score=140.13 Aligned_cols=116 Identities=25% Similarity=0.320 Sum_probs=108.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVI 92 (572)
..+||||||++..+..|+.+|+..||.|.++.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ .+|||
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~--~~~DlvllD~~lp~-~dgl~~l~~ir~~~~~~pvI 79 (469)
T PRK10923 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS--KTPDVLLSDIRMPG-MDGLALLKQIKQRHPMLPVI 79 (469)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEECCCCCC-CCHHHHHHHHHhhCCCCeEE
Confidence 4689999999999999999999999999999999999999998 78999999999999 99999999996 68999
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
++|+..+.+....+++ .|+.+||.||++.++|...++.++...
T Consensus 80 vlt~~~~~~~~~~a~~-------------~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 122 (469)
T PRK10923 80 IMTAHSDLDAAVSAYQ-------------QGAFDYLPKPFDIDEAVALVERAISHY 122 (469)
T ss_pred EEECCCCHHHHHHHHh-------------cCcceEEecCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999998887643
No 58
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.46 E-value=1.5e-12 Score=125.73 Aligned_cols=113 Identities=17% Similarity=0.241 Sum_probs=97.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-CE-EEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMD-YI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPT 91 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~g-y~-V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPV 91 (572)
|++||||||++..+..|..+|+..+ +. +..+.++.+++..+.. ..||++|+|+.||+ ++|+++++.++ ..+|
T Consensus 1 m~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlv~lDi~~~~-~~G~~~~~~l~~~~~~~i 77 (238)
T PRK11697 1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR--LKPDVVFLDIQMPR-ISGLELVGMLDPEHMPYI 77 (238)
T ss_pred CcEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHhcccCCCEE
Confidence 4799999999999999999999887 34 4578999999999987 68999999999999 99999999986 3457
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
|++|++. +...+++. .||.+||.||++.++|..++.++.++
T Consensus 78 i~vt~~~--~~~~~a~~-------------~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 78 VFVTAFD--EYAIKAFE-------------EHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred EEEeccH--HHHHHHHh-------------cCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 8888765 45567777 99999999999999999988887654
No 59
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.45 E-value=4.9e-13 Score=154.02 Aligned_cols=117 Identities=19% Similarity=0.345 Sum_probs=109.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-----C
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----D 88 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-----d 88 (572)
+-.+.+||||||+...+.....+|++.|.+|+.+.++.||+..+.. ++.||+|++|++||. |||++..++|| .
T Consensus 663 ~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~-~~~y~~ifmD~qMP~-mDG~e~~~~irk~~~~~ 740 (786)
T KOG0519|consen 663 LLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKP-PHSYDVIFMDLQMPE-MDGYEATREIRKKERWH 740 (786)
T ss_pred cccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCC-CCcccEEEEEcCCcc-cchHHHHHHHHHhhcCC
Confidence 4458899999999999999999999999999999999999999993 378999999999999 99999999997 6
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHH
Q 008254 89 LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVV 145 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vl 145 (572)
+|||.||++.+.++..+|++ .|.++||.||+..+.|..+++..+
T Consensus 741 ~pIvAlTa~~~~~~~~~c~~-------------~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 741 LPIVALTADADPSTEEECLE-------------VGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred CCEEEEecCCcHHHHHHHHH-------------hCCceEEcccccHHHHHHHHHHHh
Confidence 99999999999999999999 999999999999999999887665
No 60
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.44 E-value=7.2e-13 Score=137.95 Aligned_cols=115 Identities=20% Similarity=0.368 Sum_probs=105.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------CC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------dl 89 (572)
...+||||||+...+..|..+|.. .+.+..+.++.+|+..+.+ ..||+||+|+.||+ ++|+++++.++ ++
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~--~~~d~vi~d~~~p~-~~g~~l~~~i~~~~~~~~~ 229 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAE--TNYDLVIVSANFEN-YDPLRLCSQLRSKERTRYV 229 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhccc--CCCCEEEecCCCCC-chHhHHHHHHHhccccCCC
Confidence 356899999999999999999965 4777889999999999888 78999999999999 99999999996 69
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
|||++|++.+...+.+|+. .||+|||.||++.++|...+....++
T Consensus 230 ~ii~ls~~~~~~~~~~a~~-------------~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 230 PILLLVDEDDDPRLVKALE-------------LGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred cEEEEeCCCChHHHHHHHH-------------ccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999988776654
No 61
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.44 E-value=2.3e-13 Score=139.54 Aligned_cols=112 Identities=18% Similarity=0.295 Sum_probs=100.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIi 93 (572)
++|+|||||..+...|..+|.+.|..+.+|+...+||..|.. ..|||+++|+.||+ |+|++|+++++ .+|||+
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~--~kpDLifldI~mp~-~ngiefaeQvr~i~~~v~iif 77 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEV--FKPDLIFLDIVMPY-MNGIEFAEQVRDIESAVPIIF 77 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHh--cCCCEEEEEeecCC-ccHHHHHHHHHHhhccCcEEE
Confidence 589999999999999999999999889999999999999999 89999999999999 99999999998 699999
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
+|++..... + +|.+-+.|||.||++.+.|-.+|.++.++
T Consensus 78 Issh~eya~--d-------------sf~~n~~dYl~KPvt~ekLnraIdr~~k~ 116 (361)
T COG3947 78 ISSHAEYAD--D-------------SFGMNLDDYLPKPVTPEKLNRAIDRRLKR 116 (361)
T ss_pred Eecchhhhh--h-------------hcccchHhhccCCCCHHHHHHHHHHHhcc
Confidence 999875332 2 33477899999999999999988877754
No 62
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.43 E-value=1.5e-12 Score=149.61 Aligned_cols=117 Identities=20% Similarity=0.207 Sum_probs=108.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
.+++||||||++..+..++.+|+..||.|..+.++.+|+..+... ..||+||+|+.||+ ++|+++++.++ ++||
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~-~~~Dlvl~D~~mp~-~~G~~~~~~lr~~~~~~~i 757 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNS-EPFAAALVDFDLPD-YDGITLARQLAQQYPSLVL 757 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcC-CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCCE
Confidence 357999999999999999999999999999999999999988642 46899999999999 99999999996 6999
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
|++|+........+++. .|+++||.||++.++|..+++++++.
T Consensus 758 i~~t~~~~~~~~~~~~~-------------~g~~~~l~KP~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 758 IGFSAHVIDETLRQRTS-------------SLFRGIIPKPVPREVLGQLLAHYLQL 800 (914)
T ss_pred EEEeCCCchhhHHHHHh-------------cCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence 99999999898889998 99999999999999999999888764
No 63
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.41 E-value=2.4e-12 Score=148.45 Aligned_cols=114 Identities=19% Similarity=0.280 Sum_probs=107.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----C---C
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----D---L 89 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----d---l 89 (572)
+.+||||||++..+..++.+|+..||.|.++.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ . +
T Consensus 702 ~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvl~D~~mp~-~~g~~~~~~ir~~~~~~~~~ 778 (968)
T TIGR02956 702 PQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ--HAFDLALLDINLPD-GDGVTLLQQLRAIYGAKNEV 778 (968)
T ss_pred ccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC--CCCCEEEECCCCCC-CCHHHHHHHHHhCccccCCC
Confidence 4689999999999999999999999999999999999999998 78999999999999 99999999997 2 8
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
|||++|+....+...+++. .|+++||.||++.++|..++..++.
T Consensus 779 pii~lta~~~~~~~~~~~~-------------~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 779 KFIAFSAHVFNEDVAQYLA-------------AGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred eEEEEECCCCHHHHHHHHH-------------CCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999 9999999999999999998877664
No 64
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.41 E-value=2.6e-12 Score=152.02 Aligned_cols=117 Identities=22% Similarity=0.291 Sum_probs=109.3
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CC
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dl 89 (572)
++.+++||||||++..+..++.+|+..||+|.++.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ ++
T Consensus 955 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~-~~g~~~~~~i~~~~~~~ 1031 (1197)
T PRK09959 955 LPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM--QHYDLLITDVNMPN-MDGFELTRKLREQNSSL 1031 (1197)
T ss_pred cccCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCC
Confidence 4567899999999999999999999999999999999999999988 78999999999999 99999999986 68
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
|||++|+..+.....+++. .|+++||.||++.++|..+++.+..
T Consensus 1032 pii~lt~~~~~~~~~~~~~-------------~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1032 PIWGLTANAQANEREKGLS-------------CGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CEEEEECCCCHHHHHHHHH-------------CCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999 9999999999999999998877654
No 65
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.41 E-value=1.7e-11 Score=101.87 Aligned_cols=116 Identities=19% Similarity=0.319 Sum_probs=104.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------C
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------D 88 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~-V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------d 88 (572)
+.++|+++|++......+...|+..++. +..+.++.+++..+.. ..+|++|+|..+++ ++|+++++.++ .
T Consensus 4 ~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~di~l~d~~~~~-~~~~~~~~~l~~~~~~~~ 80 (129)
T PRK10610 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGFGFVISDWNMPN-MDGLELLKTIRADGAMSA 80 (129)
T ss_pred ccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc--cCCCEEEEcCCCCC-CCHHHHHHHHHhCCCcCC
Confidence 3479999999999999999999988984 7789999999999887 78999999999999 89999998885 4
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 89 LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
+|+|+++...+.....+++. .|+.+|+.||++.++|...++.++++
T Consensus 81 ~~~i~~~~~~~~~~~~~~~~-------------~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 81 LPVLMVTAEAKKENIIAAAQ-------------AGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred CcEEEEECCCCHHHHHHHHH-------------hCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 78999998888888888888 99999999999999999998887764
No 66
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.40 E-value=3.6e-12 Score=135.99 Aligned_cols=111 Identities=20% Similarity=0.343 Sum_probs=102.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCC----CCChHHHHHHhc----CCcE
Q 008254 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSN----TDGSFKFLETAK----DLPT 91 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd----~mdG~~lLe~Ir----dlPV 91 (572)
||||||++..+..|...| .||.|.++.++.+|++.+.. ..||+||+|+.||+ .++|+++++.++ ++||
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~--~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~pi 76 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRR--HEPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKV 76 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCE
Confidence 689999999999999988 78999999999999999998 78999999999994 168999999886 6999
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
|++|+..+.+...+++. .||++||.||++.++|..+++.++..
T Consensus 77 I~lt~~~~~~~~~~a~~-------------~Ga~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 77 IVITGNDDRENAVKAIG-------------LGAYDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred EEEecCCCHHHHHHHHH-------------CCccEEEeCCCCHHHHHHHHhhhhhh
Confidence 99999999999999999 99999999999999999988877653
No 67
>PRK13435 response regulator; Provisional
Probab=99.40 E-value=6.8e-12 Score=112.60 Aligned_cols=115 Identities=16% Similarity=0.167 Sum_probs=99.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCC-CCCChHHHHHHhc---CC
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS-NTDGSFKFLETAK---DL 89 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mP-d~mdG~~lLe~Ir---dl 89 (572)
..+++|||+|++...+..|...|+..||.+. .++++.+++..+.. ..||+||+|..++ + .+|.++++.++ .+
T Consensus 3 ~~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~dliivd~~~~~~-~~~~~~~~~l~~~~~~ 79 (145)
T PRK13435 3 LRQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR--RQPDVALVDVHLADG-PTGVEVARRLSADGGV 79 (145)
T ss_pred cccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh--cCCCEEEEeeecCCC-CcHHHHHHHHHhCCCC
Confidence 4568999999999999999999999899887 78999999998887 6899999999997 5 68999998886 79
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
|+|++++..+ ...++. .|+++||.||++.++|...+++++.+.
T Consensus 80 pii~ls~~~~---~~~~~~-------------~ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (145)
T PRK13435 80 EVVFMTGNPE---RVPHDF-------------AGALGVIAKPYSPRGVARALSYLSARR 122 (145)
T ss_pred CEEEEeCCHH---HHHHHh-------------cCcceeEeCCCCHHHHHHHHHHHHhcC
Confidence 9999998643 234555 899999999999999999998887544
No 68
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.40 E-value=4.2e-12 Score=136.02 Aligned_cols=112 Identities=27% Similarity=0.368 Sum_probs=105.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEEEe
Q 008254 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITS 95 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIiLS 95 (572)
||||||++..+..+...|+..||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ ++|||++|
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~DlVllD~~~p~-~~g~~ll~~l~~~~~~~~vIvlt 77 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR--GQPDLLITDVRMPG-EDGLDLLPQIKKRHPQLPVIVMT 77 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCC-CCHHHHHHHHHHhCCCCeEEEEe
Confidence 6899999999999999999999999999999999999988 78999999999999 99999999886 68999999
Q ss_pred CCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 96 NIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 96 ~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
+..+.....+++. .|+++||.||++.++|..+++.++..
T Consensus 78 ~~~~~~~~~~a~~-------------~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 78 AHSDLDTAVAAYQ-------------RGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred CCCCHHHHHHHHH-------------cCcceeecCCCCHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999887764
No 69
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.38 E-value=5.4e-12 Score=143.28 Aligned_cols=115 Identities=17% Similarity=0.261 Sum_probs=103.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------C-
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------D- 88 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------d- 88 (572)
.+++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .
T Consensus 524 ~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~--~~~Dlvl~D~~mp~-~~G~e~~~~ir~~~~~~~~ 600 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP--DEYDLVLLDIQLPD-MTGLDIARELRERYPREDL 600 (779)
T ss_pred cccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEcCCCCC-CCHHHHHHHHHhccccCCC
Confidence 35899999999999999999999999999999999999999987 78999999999999 99999999997 2
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 89 LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
.|||++|+... ....+++. .|+++||.||++.++|..++++++..
T Consensus 601 ~~ii~~ta~~~-~~~~~~~~-------------~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 601 PPLVALTANVL-KDKKEYLD-------------AGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred CcEEEEECCch-HhHHHHHH-------------CCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 48899988765 34567777 99999999999999999988877653
No 70
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.36 E-value=1.8e-11 Score=127.52 Aligned_cols=115 Identities=21% Similarity=0.297 Sum_probs=107.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------CCcE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLPT 91 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------dlPV 91 (572)
.+||||||++..+..|...|...+|.|.++.++.+++..+.. ..||+||+|+.||+ .+|+++++.++ .+||
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~-~~g~~l~~~i~~~~~~~~~~i 79 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER--EQPDIILLDVMMPG-MDGFEVCRRLKSDPATTHIPV 79 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCC-CCHHHHHHHHHcCcccCCCCE
Confidence 489999999999999999999889999999999999999988 78999999999999 99999999986 4899
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
|++|+..+.....+++. .||++||.||++.++|..++..+++..
T Consensus 80 i~~s~~~~~~~~~~~~~-------------~ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (457)
T PRK09581 80 VMVTALDDPEDRVRGLE-------------AGADDFLTKPINDVALFARVKSLTRLK 123 (457)
T ss_pred EEEECCCCHHHHHHHHH-------------CCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998 999999999999999999998877643
No 71
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.36 E-value=1.1e-11 Score=128.48 Aligned_cols=99 Identities=14% Similarity=0.225 Sum_probs=88.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHH-hCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLE-AMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTI 92 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~-~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPVI 92 (572)
++||||||+...+..+..+|. ..+|.+. .+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ .+|||
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~--~~pDlVllD~~mp~-~~G~e~l~~l~~~~~~pvi 77 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA--QPPDVILMDLEMPR-MDGVEATRRIMAERPCPIL 77 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc--cCCCEEEEcCCCCC-CCHHHHHHHHHHHCCCcEE
Confidence 589999999999999999995 5588876 78999999999998 78999999999999 99999999996 69999
Q ss_pred EEeCCCC--hHHHHHHHHHHHhhhhccccccCCccEEEeCCC
Q 008254 93 ITSNIHC--LSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL 132 (572)
Q Consensus 93 iLS~~~d--~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv 132 (572)
++|+..+ .....+++. .|+.+||.||+
T Consensus 78 vvs~~~~~~~~~~~~al~-------------~Ga~d~l~KP~ 106 (337)
T PRK12555 78 IVTSLTERNASRVFEAMG-------------AGALDAVDTPT 106 (337)
T ss_pred EEeCCCCcCHHHHHHHHh-------------cCceEEEECCC
Confidence 9998743 456677888 99999999999
No 72
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.30 E-value=2.1e-11 Score=136.13 Aligned_cols=116 Identities=10% Similarity=0.075 Sum_probs=102.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
..++||||||++..+..+..+|...||.|..+.++.+|+..+.. ..|||||+|+.||+ ++|+++++.++ ++||
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~--~~~Dlvl~d~~lp~-~~g~~~l~~l~~~~~~~pi 82 (665)
T PRK13558 6 PTRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA--GEIDCVVADHEPDG-FDGLALLEAVRQTTAVPPV 82 (665)
T ss_pred cceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc--cCCCEEEEeccCCC-CcHHHHHHHHHhcCCCCCE
Confidence 34799999999999999999999889999999999999999987 78999999999999 99999999996 6999
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHH--HHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSED--KLRNLWQHVVHK 147 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~e--eL~~~~q~Vlrr 147 (572)
|++|+..+...+.+++. .|+.+||.||.+.. .+..+++.++..
T Consensus 83 I~lt~~~~~~~~~~al~-------------~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 83 VVVPTAGDEAVARRAVD-------------ADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EEEECCCCHHHHHHHHh-------------cCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 99999999999999999 99999999997643 555555555543
No 73
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.30 E-value=4.5e-11 Score=124.68 Aligned_cols=102 Identities=24% Similarity=0.289 Sum_probs=90.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCc
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLP 90 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~-gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlP 90 (572)
.+++||||||+...+..|..+|... ++.+. .+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ .+|
T Consensus 2 ~~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~--~~~DlVllD~~mp~-~dgle~l~~i~~~~~~p 78 (354)
T PRK00742 2 MKIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK--LNPDVITLDVEMPV-MDGLDALEKIMRLRPTP 78 (354)
T ss_pred CccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh--hCCCEEEEeCCCCC-CChHHHHHHHHHhCCCC
Confidence 3579999999999999999999876 88877 89999999999988 78999999999999 99999999986 599
Q ss_pred EEEEeCCC--ChHHHHHHHHHHHhhhhccccccCCccEEEeCCCC
Q 008254 91 TIITSNIH--CLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLS 133 (572)
Q Consensus 91 VIiLS~~~--d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs 133 (572)
+|++|+.. ......+++. .||++||.||++
T Consensus 79 iIvls~~~~~~~~~~~~al~-------------~Ga~d~l~kP~~ 110 (354)
T PRK00742 79 VVMVSSLTERGAEITLRALE-------------LGAVDFVTKPFL 110 (354)
T ss_pred EEEEecCCCCCHHHHHHHHh-------------CCCcEEEeCCcc
Confidence 99999753 3456677777 999999999994
No 74
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.21 E-value=1.6e-10 Score=122.00 Aligned_cols=101 Identities=24% Similarity=0.329 Sum_probs=90.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPT 91 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~g--y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPV 91 (572)
++|||||||....|+.|+.+|...+ +.|.++.|+.+|++.+.+ ..||+|.+|+.||. |||+++|+.++ .+||
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~--~~PDVi~ld~emp~-mdgl~~l~~im~~~p~pV 77 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK--LKPDVITLDVEMPV-MDGLEALRKIMRLRPLPV 77 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHh--cCCCEEEEeccccc-ccHHHHHHHHhcCCCCcE
Confidence 4799999999999999999999987 456699999999999999 89999999999999 99999999996 7999
Q ss_pred EEEeCCCC--hHHHHHHHHHHHhhhhccccccCCccEEEeCCCC
Q 008254 92 IITSNIHC--LSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLS 133 (572)
Q Consensus 92 IiLS~~~d--~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs 133 (572)
||+|+... .+...+|+. +||.||+.||..
T Consensus 78 imvsslt~~g~~~t~~al~-------------~gAvD~i~kp~~ 108 (350)
T COG2201 78 IMVSSLTEEGAEATLEALE-------------LGAVDFIAKPSG 108 (350)
T ss_pred EEEeccccccHHHHHHHHh-------------cCcceeecCCCc
Confidence 99998644 455667777 999999999984
No 75
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.19 E-value=3.8e-10 Score=88.79 Aligned_cols=108 Identities=21% Similarity=0.340 Sum_probs=97.1
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEEEeC
Q 008254 21 LLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSN 96 (572)
Q Consensus 21 LVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIiLS~ 96 (572)
+++|++...+..+...|...|+.+..+.+..+++..+.. ..+|++|+|..+++ .+|+++++.++ .+|+|+++.
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~~~~~~~-~~~~~~~~~l~~~~~~~~~i~~~~ 77 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE--EKPDLILLDIMMPG-MDGLELLRRIRKRGPDIPIIFLTA 77 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh--CCCCEEEEecCCCC-CchHHHHHHHHHhCCCCCEEEEEe
Confidence 478999999999999999999999999999999999887 78999999999999 89999998885 589999998
Q ss_pred CCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHH
Q 008254 97 IHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHV 144 (572)
Q Consensus 97 ~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~V 144 (572)
..+.....+++. .|+.+|+.||++.++|...++.+
T Consensus 78 ~~~~~~~~~~~~-------------~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 78 HGDDEDAVEALK-------------AGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred cccHHHHHHHHH-------------cChhhHccCCCCHHHHHHHHHhh
Confidence 877777888888 99999999999999999877654
No 76
>PRK09191 two-component response regulator; Provisional
Probab=99.19 E-value=4.1e-10 Score=110.31 Aligned_cols=113 Identities=13% Similarity=0.206 Sum_probs=96.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTII 93 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPVIi 93 (572)
.+|||+||+...+..+...|+..|+.+. .+.++.+++..+.. ..||+||+|+.||+.++|+++++.++ .+|||+
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~--~~~dlvi~d~~~~~~~~g~e~l~~l~~~~~~pii~ 215 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK--TRPGLILADIQLADGSSGIDAVNDILKTFDVPVIF 215 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc--cCCCEEEEecCCCCCCCHHHHHHHHHHhCCCCEEE
Confidence 4799999999999999999998899887 78999999999988 78999999999994268999999886 699999
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
+|+..+.. ..+.. .|+.+||.||++.++|...++++...
T Consensus 216 ls~~~~~~--~~~~~-------------~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 216 ITAFPERL--LTGER-------------PEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred EeCCCcHH--HHHHh-------------cccCceEECCCCHHHHHHHHHHHHhc
Confidence 99976543 23333 67889999999999999988877654
No 77
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.15 E-value=4.7e-10 Score=129.46 Aligned_cols=116 Identities=24% Similarity=0.308 Sum_probs=105.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
.+.+||||||++..+..+...|...||+|+.+.++.+|+..+.+.+..||+||+ .||+ ++|+++++.++ .+||
T Consensus 696 ~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~-~~g~~l~~~l~~~~~~ipI 772 (828)
T PRK13837 696 RGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRL-LDEEQAAAALHAAAPTLPI 772 (828)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCC-CCHHHHHHHHHhhCCCCCE
Confidence 357899999999999999999999999999999999999999763345899999 6899 99999999886 6999
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
|++|+........+++. .| ++||.||++.++|..++++++++.
T Consensus 773 Ivls~~~~~~~~~~~~~-------------~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 773 ILGGNSKTMALSPDLLA-------------SV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred EEEeCCCchhhhhhHhh-------------cc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 99999998888888888 99 999999999999999998888654
No 78
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.07 E-value=1.1e-09 Score=106.93 Aligned_cols=116 Identities=19% Similarity=0.237 Sum_probs=101.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTI 92 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPVI 92 (572)
.+|||++||+...+..++..|...||+++ .+.++-++...+.. ..||+||+|+.+|. .|-.+-+.... ..|+|
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~--~~pDvVildie~p~-rd~~e~~~~~~~~~~~piv 81 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCER--LQPDVVILDIEMPR-RDIIEALLLASENVARPIV 81 (194)
T ss_pred ccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHh--cCCCEEEEecCCCC-ccHHHHHHHhhcCCCCCEE
Confidence 47999999999999999999999999765 77888899998888 89999999999999 67433333332 58899
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
++|++++.+.+..++. .|+.+||+||++...|+.++.-+..+.
T Consensus 82 ~lt~~s~p~~i~~a~~-------------~Gv~ayivkpi~~~rl~p~L~vA~srf 124 (194)
T COG3707 82 ALTAYSDPALIEAAIE-------------AGVMAYIVKPLDESRLLPILDVAVSRF 124 (194)
T ss_pred EEEccCChHHHHHHHH-------------cCCeEEEecCcchhhhhHHHHHHHHHH
Confidence 9999999999999999 999999999999999999988777664
No 79
>PRK13557 histidine kinase; Provisional
Probab=99.05 E-value=2.4e-09 Score=114.04 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=103.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
.+.+||||||+...+..+..+|+..||.+..+.++.+|+..+... ..+|+||+|..+++.++|+++++.++ .+||
T Consensus 414 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~i 492 (540)
T PRK13557 414 GTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKV 492 (540)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcE
Confidence 356899999999999999999999999999999999999998761 36999999999994268999999886 6999
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
|++|...+......++. .|+.+|+.||++.++|..+++.++.
T Consensus 493 i~~~~~~~~~~~~~~~~-------------~g~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 493 LLTTGYAEASIERTDAG-------------GSEFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred EEEcCCCchhhhhhhcc-------------ccCCceeeCCCCHHHHHHHHHHHhc
Confidence 99999888777777777 9999999999999999998877654
No 80
>PRK10693 response regulator of RpoS; Provisional
Probab=98.95 E-value=4.8e-09 Score=108.08 Aligned_cols=87 Identities=18% Similarity=0.316 Sum_probs=79.2
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHhhhhcccccc
Q 008254 46 TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQ 121 (572)
Q Consensus 46 ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~ 121 (572)
.+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||++|+..+.+.+.++++
T Consensus 2 ~a~~g~~al~~l~~--~~pDlVL~D~~mp~-~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~------------- 65 (303)
T PRK10693 2 LAANGVDALELLGG--FTPDLIICDLAMPR-MNGIEFVEHLRNRGDQTPVLVISATENMADIAKALR------------- 65 (303)
T ss_pred EeCCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHH-------------
Confidence 47889999999988 78999999999999 99999999996 699999999999999999999
Q ss_pred CCccEEEeCCC-CHHHHHHHHHHHHHHH
Q 008254 122 LGAVEFLRKPL-SEDKLRNLWQHVVHKA 148 (572)
Q Consensus 122 ~GA~dYL~KPv-s~eeL~~~~q~Vlrr~ 148 (572)
.||+|||.||+ +.++|..+++.+++..
T Consensus 66 ~Ga~dyl~KP~~~~~~L~~~i~~~l~~~ 93 (303)
T PRK10693 66 LGVQDVLLKPVKDLNRLREMVFACLYPS 93 (303)
T ss_pred CCCcEEEECCCCcHHHHHHHHHHHhhhh
Confidence 99999999999 5899999888877643
No 81
>PRK15029 arginine decarboxylase; Provisional
Probab=98.87 E-value=1.5e-08 Score=116.46 Aligned_cols=117 Identities=9% Similarity=0.106 Sum_probs=92.6
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChH----HHHHH
Q 008254 18 LRVLLLDQDSS--------AAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSF----KFLET 85 (572)
Q Consensus 18 lRVLVVDDD~~--------~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~----~lLe~ 85 (572)
|+|||||||.. +++.|+..|+..||+|..+.++++|+..+... ..||+||+|+.||+ ++|+ ++++.
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd-~dG~~~~~ell~~ 78 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEH-PDEHQNVRQLIGK 78 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCC-CccchhHHHHHHH
Confidence 47999999995 69999999999999999999999999999761 37999999999999 9997 88888
Q ss_pred hc----CCcEEEEeCCCC--hHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHH-HHHHHHHHHHHHh
Q 008254 86 AK----DLPTIITSNIHC--LSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKL-RNLWQHVVHKAFN 150 (572)
Q Consensus 86 Ir----dlPVIiLS~~~d--~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL-~~~~q~Vlrr~~~ 150 (572)
+| ++||||+|+..+ .......+. -+.+|+-+--+..++ ...+..+.++...
T Consensus 79 IR~~~~~iPIIlLTar~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 136 (755)
T PRK15029 79 LHERQQNVPVFLLGDREKALAAMDRDLLE--------------LVDEFAWILEDTADFIAGRAVAAMTRYRQ 136 (755)
T ss_pred HHhhCCCCCEEEEEcCCcccccCCHHHHH--------------hhheEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 86 699999999886 333333222 356788876665554 4446666665543
No 82
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.74 E-value=6.1e-08 Score=97.78 Aligned_cols=113 Identities=19% Similarity=0.302 Sum_probs=96.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCc
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAM-DYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~-gy~-V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlP 90 (572)
+++|+++||++..+..|..++... .++ +.++.++.++++.+.. ..+|++++|+.||+ ++|+++...++ ..+
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fldI~~~~-~~G~ela~~i~~~~~~~~ 77 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQG--LRPDLVFLDIAMPD-INGIELAARIRKGDPRPA 77 (244)
T ss_pred CCcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhc--cCCCeEEEeeccCc-cchHHHHHHhcccCCCCe
Confidence 578999999999999999999943 333 3379999999999999 79999999999999 99999999998 478
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
||++|++.+ ....++ +..|.|||.||.+.+.|..++....+.
T Consensus 78 Ivfvt~~~~--~a~~af-------------ev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 78 IVFVTAHDE--YAVAAF-------------EVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred EEEEEehHH--HHHHHH-------------hHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 899999764 333333 488999999999999999988877665
No 83
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.20 E-value=1.7e-05 Score=91.30 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=93.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh-c-----C
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA-K-----D 88 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I-r-----d 88 (572)
..+.+|+|+||++..+..+..+|+..||.|..+.+..+ +.. ..+|++|+|+.|++ +.+...+... + .
T Consensus 534 ~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~~--~~~d~il~~~~~~~-~~~~~~~~~~~~~~~~~~ 606 (919)
T PRK11107 534 LAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LPE--AHYDILLLGLPVTF-REPLTMLHERLAKAKSMT 606 (919)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hcc--CCCCEEEecccCCC-CCCHHHHHHHHHhhhhcC
Confidence 45789999999999999999999999999999998887 344 67999999999998 6665544433 2 4
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHH
Q 008254 89 LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVV 145 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vl 145 (572)
.++|+++...+......+.. .|+++|+.||++..+|..++....
T Consensus 607 ~~~i~~~~~~~~~~~~~~~~-------------~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 607 DFLILALPCHEQVLAEQLKQ-------------DGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred CcEEEEeCCcchhhHHHHhh-------------CCCceEECCCCCHHHHHHHHHHhh
Confidence 67888888888888888877 999999999999999999877554
No 84
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.67 E-value=0.00033 Score=47.99 Aligned_cols=55 Identities=25% Similarity=0.380 Sum_probs=49.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTS 74 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mP 74 (572)
++|++++++...+..+...|...|+.+..+.+..+++..+.. ..+|++++|+.++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKE--EKPDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHh--cCCCEEEEeccCC
Confidence 479999999999999999999999999999999999998877 6799999998653
No 85
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=97.55 E-value=8.1e-05 Score=81.42 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=81.6
Q ss_pred CEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHhhhhcccc
Q 008254 42 YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNN 119 (572)
Q Consensus 42 y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~ 119 (572)
|+|.++..+-+|+..+.. +.+|.+++|+.||+ ++||+++++++ ...++|+|...+...-+++..
T Consensus 13 ~~v~~a~~g~~~l~~~~~--~~~~~~lld~~m~~-~~~~~~~~~lk~~~~~~v~~t~~~~~~~~~~~~~----------- 78 (435)
T COG3706 13 KEVATAKKGLIALAILLD--HKPDYKLLDVMMPG-MDGFELCRRLKAEPATVVMVTALDDSAPRVRGLK----------- 78 (435)
T ss_pred hhhhhccchHHHHHHHhc--CCCCeEEeecccCC-cCchhHHHHHhcCCcceEEEEecCCCCcchhHHh-----------
Confidence 578889999999999999 89999999999999 99999999998 345789999888888888888
Q ss_pred ccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 120 FQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 120 ~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
.|+.+||.||++...+......+.+..
T Consensus 79 --~~~~~~l~~~~~~~~~~~r~~~l~~~k 105 (435)
T COG3706 79 --AGADDFLTKPVNDSQLFLRAKSLVRLK 105 (435)
T ss_pred --hhhhhhccCCCChHHHHHhhhhhccch
Confidence 999999999999999999888777653
No 86
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.01 E-value=0.0061 Score=54.68 Aligned_cols=103 Identities=15% Similarity=0.188 Sum_probs=70.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEEE
Q 008254 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIIT 94 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIiL 94 (572)
||||||||...+..|+.+|+=.|+++..++..+- .....+ ...+.+++-..-.+ ...++++.+. .+|||++
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~--~~~~~~~v~~g~~~--~~~~~l~~l~~~~~~~Pvlll 75 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWS--SPWEACAVILGSCS--KLAELLKELLKWAPHIPVLLL 75 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhh--cCCcEEEEEecCch--hHHHHHHHHHhhCCCCCEEEE
Confidence 6999999999999999999999999888776544 333333 34444444332111 2345555553 7999999
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHH
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHV 144 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~V 144 (572)
....... .. ..+.+-|..|++..+|.++++++
T Consensus 76 g~~~~~~----~~--------------~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 76 GEHDSPE----EL--------------PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred CCCCccc----cc--------------cCeeEecCCCCCHHHHHHHHHHh
Confidence 8876541 11 22666799999999999977764
No 87
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=96.47 E-value=0.0047 Score=47.27 Aligned_cols=48 Identities=29% Similarity=0.383 Sum_probs=41.7
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCCHHHHhhhCCCCCCHHHHHHhhhhhh
Q 008254 332 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYR 382 (572)
Q Consensus 332 r~~Wt~eLh~~Fv~av~~lG~~~a~Pk~il~lM~v~glt~~~v~SHLQkyr 382 (572)
|-.||+|=+.+|++||.++|.+ .-+.|.+.|+ .|-|..++++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 4589999999999999999954 5789999998 8999999999999985
No 88
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=95.79 E-value=0.086 Score=47.60 Aligned_cols=104 Identities=12% Similarity=0.137 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCC-CCChHHHHHHhc----CCcEEEEeCCCChHHH
Q 008254 29 AAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSN-TDGSFKFLETAK----DLPTIITSNIHCLSTM 103 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd-~mdG~~lLe~Ir----dlPVIiLS~~~d~~~~ 103 (572)
....|...|+..||+|+.+.+.++|+..+++. ..+++||+++. .+ -....++++.++ .+||.+++.....+.+
T Consensus 5 ~~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~-~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l 82 (115)
T PF03709_consen 5 ASRELAEALEQRGREVVDADSTDDALAIIESF-TDIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDL 82 (115)
T ss_dssp HHHHHHHHHHHTTTEEEEESSHHHHHHHHHCT-TTEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEeCChHHHHHHHHhC-CCeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCCCcccC
Confidence 45678888888999999999999999999985 67899999986 21 012356777775 8999999997755544
Q ss_pred HHHHHHHHhhhhccccccCCccEEEeCCCCHHH-HHHHHHHHHHH
Q 008254 104 MKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDK-LRNLWQHVVHK 147 (572)
Q Consensus 104 ~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~ee-L~~~~q~Vlrr 147 (572)
-..+- .-+++|+-..-+..+ +...|..++++
T Consensus 83 ~~~~l-------------~~v~~~i~l~~~t~~fia~rI~~Aa~~ 114 (115)
T PF03709_consen 83 PAEVL-------------GEVDGFIWLFEDTAEFIARRIEAAARR 114 (115)
T ss_dssp CHHHH-------------CCESEEEETTTTTHHHHHHHHHHHHHH
T ss_pred CHHHH-------------hhccEEEEecCCCHHHHHHHHHHHHHh
Confidence 44443 567888888765544 45556665554
No 89
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=95.67 E-value=0.32 Score=45.31 Aligned_cols=109 Identities=10% Similarity=0.061 Sum_probs=75.4
Q ss_pred eCCHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHH-HHHHhc----CCcEEEEe
Q 008254 24 DQDSSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFK-FLETAK----DLPTIITS 95 (572)
Q Consensus 24 DDD~~~~~~L~~lL~~~gy~V~---ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~-lLe~Ir----dlPVIiLS 95 (572)
|-+..-...+..+|+..||+|. ...+.+++++...+ ..+|+|.+-..+...+..+. +++.++ +...|++-
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e--~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVE--ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 5566677788899999999998 45688999999988 78999888665543122222 333443 22334455
Q ss_pred CCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 96 NIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 96 ~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
+..-.+...+..+ +|+++|+-.-.+..++...+...+..
T Consensus 91 G~~~~~~~~~l~~-------------~Gvd~~~~~gt~~~~i~~~l~~~~~~ 129 (132)
T TIGR00640 91 GVIPPQDFDELKE-------------MGVAEIFGPGTPIPESAIFLLKKLRK 129 (132)
T ss_pred CCCChHhHHHHHH-------------CCCCEEECCCCCHHHHHHHHHHHHHH
Confidence 4333344455555 99999999999999999887775543
No 90
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=95.47 E-value=0.31 Score=44.23 Aligned_cols=109 Identities=14% Similarity=0.085 Sum_probs=77.6
Q ss_pred EEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCC-hHHHHHHhc---
Q 008254 19 RVLLL----DQDSSAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK--- 87 (572)
Q Consensus 19 RVLVV----DDD~~~~~~L~~lL~~~gy~V~t---a~~a~EAL~~L~e~~~~pDLVIvDv~mPd~md-G~~lLe~Ir--- 87 (572)
||++. |.+..-...+..+|+..||+|.. ....++.++.+.+ ..+|+|.+-..+..... .-++++.++
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~--~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQ--EDVDVIGLSSLSGGHMTLFPEVIELLRELG 78 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEcccchhhHHHHHHHHHHHHhcC
Confidence 35555 66677777888899999999884 4568899999988 89999998877654111 133455554
Q ss_pred -CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHH
Q 008254 88 -DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQ 142 (572)
Q Consensus 88 -dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q 142 (572)
.-..|++-+..-.+...+..+ +|+++|+-.-.+.+++...++
T Consensus 79 ~~~i~i~~GG~~~~~~~~~~~~-------------~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 79 AGDILVVGGGIIPPEDYELLKE-------------MGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred CCCCEEEEECCCCHHHHHHHHH-------------CCCCEEECCCCCHHHHHHHHh
Confidence 234566666555555666666 999999999999998877543
No 91
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.26 E-value=0.58 Score=43.83 Aligned_cols=114 Identities=12% Similarity=0.069 Sum_probs=82.3
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEeCCCCCCC-ChHHHHHHhc
Q 008254 16 KGLRVLLL----DQDSSAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTD-GSFKFLETAK 87 (572)
Q Consensus 16 ~~lRVLVV----DDD~~~~~~L~~lL~~~gy~V~t---a~~a~EAL~~L~e~~~~pDLVIvDv~mPd~m-dG~~lLe~Ir 87 (572)
++.+||+. |.+..=...+..+|+..||+|+. ....++.++.+.+ ..+|+|.+-..+...+ ...++++.++
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~--~~~d~V~lS~~~~~~~~~~~~~~~~L~ 79 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIE--TDADAILVSSLYGHGEIDCRGLREKCI 79 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEcCccccCHHHHHHHHHHHH
Confidence 45688888 88888888999999999999984 4468899999998 8999999988776512 2234555554
Q ss_pred -----CCcEEEEeCCC------ChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHH
Q 008254 88 -----DLPTIITSNIH------CLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVV 145 (572)
Q Consensus 88 -----dlPVIiLS~~~------d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vl 145 (572)
+++ |++-+.. ..+...++.+ +|.+..+....+.+++.+.++..+
T Consensus 80 ~~~~~~~~-i~vGG~~~~~~~~~~~~~~~l~~-------------~G~~~vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 80 EAGLGDIL-LYVGGNLVVGKHDFEEVEKKFKE-------------MGFDRVFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred hcCCCCCe-EEEECCCCCCccChHHHHHHHHH-------------cCCCEEECcCCCHHHHHHHHHHHh
Confidence 444 4444432 2334445555 999999998999999988666544
No 92
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.04 E-value=0.1 Score=62.37 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=45.2
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCC
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTS 74 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mP 74 (572)
...+.+||||||++..+..++.+|+..||+|.++.+. +.. ..|||||+|..+.
T Consensus 686 ~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~------~~~--~~~Dlvl~D~~~~ 738 (894)
T PRK10618 686 LLDGVTVLLDITSEEVRKIVTRQLENWGATCITPDER------LIS--QEYDIFLTDNPSN 738 (894)
T ss_pred cCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCcc------ccC--CCCCEEEECCCCc
Confidence 3467899999999999999999999999999988753 234 5799999999843
No 93
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=93.51 E-value=0.87 Score=40.54 Aligned_cols=92 Identities=10% Similarity=0.010 Sum_probs=62.9
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEeCCCCCCC-ChHHHHHHhc--C--CcEEEEe
Q 008254 24 DQDSSAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTD-GSFKFLETAK--D--LPTIITS 95 (572)
Q Consensus 24 DDD~~~~~~L~~lL~~~gy~V~t---a~~a~EAL~~L~e~~~~pDLVIvDv~mPd~m-dG~~lLe~Ir--d--lPVIiLS 95 (572)
|.+..=...+..+|+..||+|.. ....++.++.+.+ ..+|+|.+-..+.... ...++++.++ . -..|++.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~--~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKE--EDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 55666778899999999999964 3467888899988 8999999887755411 2344555555 2 3556777
Q ss_pred CCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 96 NIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 96 ~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
+..-......+.. .|++.|+..
T Consensus 88 G~~~~~~~~~~~~-------------~G~D~~~~~ 109 (119)
T cd02067 88 GAIVTRDFKFLKE-------------IGVDAYFGP 109 (119)
T ss_pred CCCCChhHHHHHH-------------cCCeEEECC
Confidence 7655443334444 999777763
No 94
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=93.32 E-value=0.77 Score=53.80 Aligned_cols=115 Identities=13% Similarity=0.090 Sum_probs=76.5
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----
Q 008254 18 LRVLLLDQDS-S-----AAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (572)
Q Consensus 18 lRVLVVDDD~-~-----~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---- 87 (572)
|+|+|||++- . -...|...|++.||+|..+.+..+++..+.+. ..+++||+++. + ....++..++
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~--~~~~~~~~~~~~~~ 75 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHN-PRICGVIFDWD--E--YSLDLCSDINQLNE 75 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcc-cceeEEEEecc--c--chHHHHHHHHHhCC
Confidence 4688888774 2 25667778888999999999999999998864 67899999852 2 2345777665
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCC-HHHHHHHHHHHHHHHHh
Q 008254 88 DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLS-EDKLRNLWQHVVHKAFN 150 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs-~eeL~~~~q~Vlrr~~~ 150 (572)
++||+++........+-..+- .-+++|+-.-.+ .+.+...|..++++...
T Consensus 76 ~~Pv~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~a~~i~~~~~~y~~ 126 (713)
T PRK15399 76 YLPLYAFINTHSTMDVSVQDM-------------RMALWFFEYALGAAEDIAIRIRQYTNEYLD 126 (713)
T ss_pred CCCEEEEcCccccccCChhHh-------------hhcceeeeeccCCHHHHHHHHHHHHHHHHH
Confidence 899999987653332222221 234555554443 34445556666666543
No 95
>PRK15320 transcriptional activator SprB; Provisional
Probab=93.26 E-value=0.45 Score=48.03 Aligned_cols=153 Identities=16% Similarity=0.227 Sum_probs=97.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHH--H-HHhcCCcEEE
Q 008254 19 RVLLLDQDSSAAAELKFKLEAM--DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKF--L-ETAKDLPTII 93 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~~--gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~l--L-e~IrdlPVIi 93 (572)
+|+|-.|+=...-.+..++++. +..|.+|.+....|..++. .||.+++=.--|. ..-+-| | ..+.+-||++
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~---~p~a~lil~l~p~-eh~~lf~~l~~~l~~~~v~v 78 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSD---MPDAGLILALNPH-EHVYLFHALLTRLQNRKVLV 78 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhh---CCCceEEEeeCch-hHHHHHHHHHHHcCCCceEE
Confidence 5778888777777888888875 6788899999999999887 3554443333455 333322 2 3334889999
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHH-------------HHHHHHHH----------h
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLW-------------QHVVHKAF----------N 150 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~-------------q~Vlrr~~----------~ 150 (572)
++..-- .+-+|+- +- .|..+|++| +||..+| -+..++-. +
T Consensus 79 v~d~l~--~~dr~vl----~~-------~g~~~~~l~----~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (251)
T PRK15320 79 VADRLY--YIDRCVL----QY-------FGVMDYVLK----DELSCAIRSEREKLRLPEAWLRFCHRPQKKTVAATYAFN 141 (251)
T ss_pred Eeccee--ehhhhhh----hh-------hcchhHHHH----HHHHHHhcccccccCCcHHHHHHhcCccccccceeeecc
Confidence 987532 2222322 11 678888876 3443333 32222211 1
Q ss_pred cCCC--------------cccCCCChhHHHHHHHHHhcchhhhhhccccccccccc
Q 008254 151 AGGS--------------ALSDSLKPVKESVVSMLHLKLENGESKNEKSENTEYVL 192 (572)
Q Consensus 151 ~~~~--------------~~~~sLt~RE~eVL~ll~~~len~e~~~e~s~~~e~v~ 192 (572)
..+. .+...||.||.+|++++..|..+++...+...+..+|.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~LSdREIEVL~LLAkG~SNKEIAekL~LS~KTVS 197 (251)
T PRK15320 142 AGETPEEVLFNINQYAWWNLPPGVTQAKYALLILLSSGHPAIELAKKFGLGTKTVS 197 (251)
T ss_pred CCCChHHHhhhccceeeecCCCCCCHHHHHHHHHHHcCCCHHHHHHHhccchhhHH
Confidence 1110 11356999999999999999999999887776666654
No 96
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=92.75 E-value=0.85 Score=53.46 Aligned_cols=115 Identities=14% Similarity=0.179 Sum_probs=75.2
Q ss_pred cEEEEEeCCH------HHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----
Q 008254 18 LRVLLLDQDS------SAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (572)
Q Consensus 18 lRVLVVDDD~------~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---- 87 (572)
|+||||+++. .-...|..-|++.||+|..+.+..+++..+... ..+++||+|.. + ....++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~--~~~~~~~~~~~~~~ 75 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWD--K--YNLELCEEISKMNE 75 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc-cceeEEEEecc--h--hhHHHHHHHHHhCC
Confidence 4678887762 125667788888999999999999999998864 67899999852 2 2345777765
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCC-CHHHHHHHHHHHHHHHHh
Q 008254 88 DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL-SEDKLRNLWQHVVHKAFN 150 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv-s~eeL~~~~q~Vlrr~~~ 150 (572)
++||+++........+-..+- .-+++|+-.-- +.+.+...|..++++...
T Consensus 76 ~~Pv~~~~~~~~~~~~~~~~l-------------~~~~~~~~~~~~~~~~~a~~i~~~~~~y~~ 126 (714)
T PRK15400 76 NLPLYAFANTYSTLDVSLNDL-------------RLQVSFFEYALGAADDIANKIKQTTDEYID 126 (714)
T ss_pred CCCEEEEccccccccCChHHh-------------hhccceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 899999987643332212111 12344544333 345555556666666543
No 97
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=90.52 E-value=4.1 Score=38.41 Aligned_cols=105 Identities=7% Similarity=0.034 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHH-HHHHhc----CCcEEEEeCC-
Q 008254 27 SSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFK-FLETAK----DLPTIITSNI- 97 (572)
Q Consensus 27 ~~~~~~L~~lL~~~gy~V~---ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~-lLe~Ir----dlPVIiLS~~- 97 (572)
..=...+..+|+..||+|+ ...+.++.++.+.+ ..+|+|-+-..|...+..++ +.+.++ .-++|++-+.
T Consensus 15 diGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~--~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~ 92 (134)
T TIGR01501 15 AVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIE--TKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNL 92 (134)
T ss_pred hHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCc
Confidence 3445668889999999998 56688999999999 89999988776655233333 444443 2244666553
Q ss_pred ----CChHH-HHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 98 ----HCLST-MMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 98 ----~d~~~-~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
.+... ..++.+ +|.+..+-.....+++.+.+++.++
T Consensus 93 vi~~~d~~~~~~~l~~-------------~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 93 VVGKQDFPDVEKRFKE-------------MGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred CcChhhhHHHHHHHHH-------------cCCCEEECcCCCHHHHHHHHHHHhc
Confidence 22222 223444 9999999988899999997776653
No 98
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=90.25 E-value=0.87 Score=47.54 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=56.5
Q ss_pred CCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHH-h-cCCcEEEEeC-CCChHHHHHHHHHHHhhhhcc
Q 008254 41 DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLET-A-KDLPTIITSN-IHCLSTMMKCIAIMVMNQLFD 117 (572)
Q Consensus 41 gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~-I-rdlPVIiLS~-~~d~~~~~kai~~~~~~~~~~ 117 (572)
|.++..+.+..++-+... .-.+|++|..+-. ..++. + +...||++.+ ..+.+....++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~-----~~~~~~~p~~~~vv~v~~~~~~~~~~~~a~~--------- 62 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA----RAPLVLVDADMAE-----ACAAAGLPRRRRVVLVGGGEPGGALWRAAAA--------- 62 (322)
T ss_pred CCceEEccCchhhhhccc----cCCeEEECchhhh-----HHHhccCCCCCCEEEEeCCCCCHHHHHHHHH---------
Confidence 455666676666544433 3578999865432 11222 2 2445665554 557888899998
Q ss_pred ccccCCccEEEeCCCCHHHHHHHHHHHH
Q 008254 118 NNFQLGAVEFLRKPLSEDKLRNLWQHVV 145 (572)
Q Consensus 118 ~~~~~GA~dYL~KPvs~eeL~~~~q~Vl 145 (572)
.||.+||.+|++.++|..++..+.
T Consensus 63 ----~Ga~~~l~~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 63 ----VGAEHVAVLPEAEGWLVELLADLD 86 (322)
T ss_pred ----hChhheeeCCCCHHHHHHHHHhhc
Confidence 999999999999999999887653
No 99
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=88.83 E-value=2.2 Score=50.18 Aligned_cols=28 Identities=39% Similarity=0.560 Sum_probs=16.1
Q ss_pred CCCCCCCCchhHHHHHHHHcCCCCCCCC
Q 008254 538 LPLGLKPPSADSVLAELSRQGISTIPPR 565 (572)
Q Consensus 538 lplglkpps~~~v~~el~~qgi~~~pp~ 565 (572)
||.||||=-+=-|=.-+.|-.-++|=|+
T Consensus 610 lP~gLkpKK~~k~e~~Mrr~nW~kI~p~ 637 (1102)
T KOG1924|consen 610 LPFGLKPKKVYKPEVPMRRFNWSKIVPR 637 (1102)
T ss_pred CCCCCCccccCCCCCccccCCccccCcc
Confidence 7889998554444444445555554443
No 100
>smart00426 TEA TEA domain.
Probab=88.48 E-value=0.57 Score=39.51 Aligned_cols=46 Identities=24% Similarity=0.361 Sum_probs=30.2
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCCH-HHHhh--------------hCCCCC--CHHHHHHhhhh
Q 008254 334 DWTPELHKKFVQAVEQLGVDQAIPS-RILEL--------------MKVEGL--TRHNVASHLQK 380 (572)
Q Consensus 334 ~Wt~eLh~~Fv~av~~lG~~~a~Pk-~il~l--------------M~v~gl--t~~~v~SHLQk 380 (572)
+|.++|-..|++|+...-.. .+=| +++.. -...|. |+.+|.||||-
T Consensus 5 vWp~~lE~Af~~aL~~~~~~-g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv 67 (68)
T smart00426 5 VWSPDIEQAFQEALAIYPPC-GRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 67 (68)
T ss_pred cCcHHHHHHHHHHHHHcCcc-CcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence 79999999999999987421 1221 22211 012444 88999999994
No 101
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=87.57 E-value=13 Score=35.70 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=76.2
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHH----HH
Q 008254 16 KGLRVLLL----DQDSSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKF----LE 84 (572)
Q Consensus 16 ~~lRVLVV----DDD~~~~~~L~~lL~~~gy~V~---ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~l----Le 84 (572)
+..||||. |-+..-.+.+.+.|+..||+|. .+.+.+|+++..-+ +..|+|.+-..- .....+ .+
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~--~dv~vIgvSsl~---g~h~~l~~~lve 85 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVE--EDVDVIGVSSLD---GGHLTLVPGLVE 85 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHh--cCCCEEEEEecc---chHHHHHHHHHH
Confidence 45677764 7788888999999999999998 67799999998877 688888765421 123333 34
Q ss_pred Hhc-----CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 85 TAK-----DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 85 ~Ir-----dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
.++ ++. ++.-+.-..+...+-.+ +|++.|+.--.+..+..+-+.+.+.
T Consensus 86 ~lre~G~~~i~-v~~GGvip~~d~~~l~~-------------~G~~~if~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 86 ALREAGVEDIL-VVVGGVIPPGDYQELKE-------------MGVDRIFGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred HHHHhCCcceE-EeecCccCchhHHHHHH-------------hCcceeeCCCCCHHHHHHHHHHHHH
Confidence 443 333 23444444444444444 9999999988888777765555444
No 102
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=87.01 E-value=2.3 Score=44.29 Aligned_cols=119 Identities=15% Similarity=0.137 Sum_probs=75.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEEE
Q 008254 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIIT 94 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIiL 94 (572)
.|-+.=.++.+...+..+|...-|.++.+.++++.++.+..+++.+|++|+...... ..++..+. -+|+|++
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~~~----~~~~~~L~e~g~LLPaVil 77 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSPLL----PPLFNQLYEQGILLPAVIL 77 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTSTT----HHHHHHHHHCT----EEEE
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCCCc----HHHHHHHHHcCccccEEEE
Confidence 456666788899999999999999999999999999999988889999999987655 44555553 6999998
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcC
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAG 152 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~ 152 (572)
........... .-.+..-..+.-+..-..++|-..|.+++.+....+
T Consensus 78 ~~~~s~~~~~~-----------~~~~~YH~aEV~L~~~qL~ql~~~ID~AIsrFL~l~ 124 (283)
T PF07688_consen 78 GSSESASTTSE-----------SGTVLYHSAEVHLPIDQLEQLSYNIDQAISRFLRLG 124 (283)
T ss_dssp S---S--TTS-------------SSGSSBTT-EEE-CCGTTCHHHHHHHHHHHHHHH-
T ss_pred ecCcccccCCC-----------CCceeeehHheEccHHHHHHHHHHHHHHHHHHHhhC
Confidence 66322111000 001113334455656667888888888888876543
No 103
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=86.66 E-value=2.8 Score=39.37 Aligned_cols=105 Identities=19% Similarity=0.128 Sum_probs=70.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCC----CCChHHHHHHhcCCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSN----TDGSFKFLETAKDLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd----~mdG~~lLe~IrdlPV 91 (572)
.|.|.+.||.+...+.....+|...+.+|+.-. ++..+-. ..+|++|+.+-.+- .|--..+.+.+.-.-.
T Consensus 10 ~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~----t~~~lp~--~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~mtd~ 83 (140)
T COG4999 10 AGKRLAYIEPNSTAAQCTLDILSETPLEVTYRP----TFSALPP--AHYDMMLLGVAVTFRENLTMQHERLAKALSMTDF 83 (140)
T ss_pred ccceeEEecCccHHHHHHHHHHhcCCceEEecc----cccccCh--hhhceeeecccccccCCchHHHHHHHHHHhhhcc
Confidence 567999999999999999999999999998533 2334434 57899999986653 0222334444443333
Q ss_pred EEEeCCCCh-HHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHH
Q 008254 92 IITSNIHCL-STMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRN 139 (572)
Q Consensus 92 IiLS~~~d~-~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~ 139 (572)
+|+.-.... ....+... .|+.+.|+||++.-.|+.
T Consensus 84 vilalPs~~qv~AeqLkQ-------------~g~~~CllKPls~~rLlp 119 (140)
T COG4999 84 VILALPSHAQVNAEQLKQ-------------DGAGACLLKPLSSTRLLP 119 (140)
T ss_pred eEEecCcHHHHhHHHHhh-------------cchHhHhhCcchhhhhHH
Confidence 444333222 22233333 899999999999988876
No 104
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=86.50 E-value=13 Score=34.92 Aligned_cols=100 Identities=9% Similarity=0.071 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHH-HHHHhc-----CCcEEEEeCC
Q 008254 27 SSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFK-FLETAK-----DLPTIITSNI 97 (572)
Q Consensus 27 ~~~~~~L~~lL~~~gy~V~---ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~-lLe~Ir-----dlPVIiLS~~ 97 (572)
..=...+..+|+..||+|+ ...+.++.++...+ +.+|+|.+-..|...+..++ +++.++ +++ |++-+.
T Consensus 13 diGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~--~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~-vivGG~ 89 (128)
T cd02072 13 AVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIE--TDADAILVSSLYGHGEIDCKGLREKCDEAGLKDIL-LYVGGN 89 (128)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCe-EEEECC
Confidence 3345678889999999998 56688999999998 89999988777665343333 333443 544 444443
Q ss_pred C-----ChH-HHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHH
Q 008254 98 H-----CLS-TMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQ 142 (572)
Q Consensus 98 ~-----d~~-~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q 142 (572)
. +.. ...+..+ +|++..+....+.+++.+.++
T Consensus 90 ~~i~~~d~~~~~~~L~~-------------~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 90 LVVGKQDFEDVEKRFKE-------------MGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred CCCChhhhHHHHHHHHH-------------cCCCEEECcCCCHHHHHHHHh
Confidence 1 222 2333444 999999998888888877553
No 105
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=85.23 E-value=9.7 Score=37.66 Aligned_cols=84 Identities=19% Similarity=0.227 Sum_probs=58.0
Q ss_pred HHHHHHHHHh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCC-------CCCCCChHHHHHHhc---CCcEEEEeCC
Q 008254 30 AAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVT-------TSNTDGSFKFLETAK---DLPTIITSNI 97 (572)
Q Consensus 30 ~~~L~~lL~~-~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~-------mPd~mdG~~lLe~Ir---dlPVIiLS~~ 97 (572)
...+...+++ .+..+. .+.+.+++..+... .+|++.+... ... ...++++++++ ++|||...+.
T Consensus 107 ~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~---G~d~i~~~~~g~t~~~~~~~-~~~~~~i~~i~~~~~iPvia~GGI 182 (221)
T PRK01130 107 LAELVKRIKEYPGQLLMADCSTLEEGLAAQKL---GFDFIGTTLSGYTEETKKPE-EPDFALLKELLKAVGCPVIAEGRI 182 (221)
T ss_pred HHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEEcCCceeecCCCCCC-CcCHHHHHHHHHhCCCCEEEECCC
Confidence 3444555555 555544 66788888665544 6888866421 112 23477888876 7999999999
Q ss_pred CChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 98 HCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 98 ~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
.+.+.+.+++. .||++++.=
T Consensus 183 ~t~~~~~~~l~-------------~GadgV~iG 202 (221)
T PRK01130 183 NTPEQAKKALE-------------LGAHAVVVG 202 (221)
T ss_pred CCHHHHHHHHH-------------CCCCEEEEc
Confidence 89999999999 999988764
No 106
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=85.11 E-value=10 Score=33.05 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=56.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEE------CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh-c--CC
Q 008254 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTF------YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA-K--DL 89 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~~gy~V~ta------~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I-r--dl 89 (572)
+||||.........++..+++.|+..... ......|...- ...|+||+=+..-. -+....++.. + ++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i---~~aD~VIv~t~~vs-H~~~~~vk~~akk~~i 76 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKI---KKADLVIVFTDYVS-HNAMWKVKKAAKKYGI 76 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhc---CCCCEEEEEeCCcC-hHHHHHHHHHHHHcCC
Confidence 48999998888899999999999988877 22222233222 24699987665544 3445555444 2 89
Q ss_pred cEEEEeCCCChHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIA 108 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~ 108 (572)
|+++.-+ .....+.+++.
T Consensus 77 p~~~~~~-~~~~~l~~~l~ 94 (97)
T PF10087_consen 77 PIIYSRS-RGVSSLERALE 94 (97)
T ss_pred cEEEECC-CCHHHHHHHHH
Confidence 9987754 34456666654
No 107
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=84.96 E-value=8.1 Score=37.99 Aligned_cols=96 Identities=15% Similarity=0.111 Sum_probs=65.4
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCC-hHHHHHHhc-
Q 008254 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK- 87 (572)
Q Consensus 17 ~lRVLVV----DDD~~~~~~L~~lL~~~gy~V~ta---~~a~EAL~~L~e~~~~pDLVIvDv~mPd~md-G~~lLe~Ir- 87 (572)
..+|++. |.+..=...+..+|+..||+|+-. ...++.++.+.+ ..||+|-+-+.|...+. ..++++.++
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~--~~~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE--HKPDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHH
Confidence 4578877 777777889999999999999843 367889999988 89999999887765222 233455554
Q ss_pred -C---CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 88 -D---LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 88 -d---lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
. -..|++-+..-... -+-. .||+.|-.
T Consensus 160 ~~~~~~~~i~vGG~~~~~~--~~~~-------------~GaD~~~~ 190 (201)
T cd02070 160 AGLRDKVKVMVGGAPVNQE--FADE-------------IGADGYAE 190 (201)
T ss_pred CCCCcCCeEEEECCcCCHH--HHHH-------------cCCcEEEC
Confidence 1 12344555432222 2223 89998875
No 108
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=84.77 E-value=5.9 Score=39.77 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=57.1
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHhhcCCCCeeEEEEeCCCCCCCCh-HHHHHHhc
Q 008254 16 KGLRVLLL----DQDSSAAAELKFKLEAMDYIVSTFY---NENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK 87 (572)
Q Consensus 16 ~~lRVLVV----DDD~~~~~~L~~lL~~~gy~V~ta~---~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG-~~lLe~Ir 87 (572)
..-+|++. |.+..=...+..+|+..||+|+-.. ..++.++.+.+ .++|+|.+-..|+..+.. .++++.++
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~--~~~~~V~lS~~~~~~~~~~~~~i~~L~ 164 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKE--HKADIIGLSGLLVPSLDEMVEVAEEMN 164 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEccchhccHHHHHHHHHHHH
Confidence 44578877 7788888889999999999998544 68889999998 899999999888752333 33455554
Q ss_pred ----CCcEEEE
Q 008254 88 ----DLPTIIT 94 (572)
Q Consensus 88 ----dlPVIiL 94 (572)
+++|++=
T Consensus 165 ~~~~~~~i~vG 175 (213)
T cd02069 165 RRGIKIPLLIG 175 (213)
T ss_pred hcCCCCeEEEE
Confidence 4555443
No 109
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=83.09 E-value=20 Score=34.62 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=50.1
Q ss_pred CCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCC-------CChHHHHHHhc---C-CcEEEEeCCCChHHHHHHHH
Q 008254 41 DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT-------DGSFKFLETAK---D-LPTIITSNIHCLSTMMKCIA 108 (572)
Q Consensus 41 gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~-------mdG~~lLe~Ir---d-lPVIiLS~~~d~~~~~kai~ 108 (572)
+..+. .+.+..++++.... .+|+|.+.-..|.. ..|++.++.++ . +||++.-+. ..+.+.+++.
T Consensus 104 ~~~~g~~~~t~~e~~~a~~~---gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~ 179 (212)
T PRK00043 104 DAIIGLSTHTLEEAAAALAA---GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLE 179 (212)
T ss_pred CCEEEEeCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHH
Confidence 44443 56677787777654 68999876544430 13577777774 4 898888776 5688888888
Q ss_pred HHHhhhhccccccCCccEEEe
Q 008254 109 IMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 109 ~~~~~~~~~~~~~~GA~dYL~ 129 (572)
.||+++.+
T Consensus 180 -------------~Ga~gv~~ 187 (212)
T PRK00043 180 -------------AGADGVAV 187 (212)
T ss_pred -------------cCCCEEEE
Confidence 99998875
No 110
>PRK00208 thiG thiazole synthase; Reviewed
Probab=82.72 E-value=4.7 Score=41.86 Aligned_cols=109 Identities=14% Similarity=0.138 Sum_probs=71.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHH------hCCCEEE-EEC-CHHHHHHHhhcCCCCeeEEEEeCCCC--C---CCCh---HH
Q 008254 18 LRVLLLDQDSSAAAELKFKLE------AMDYIVS-TFY-NENEALSAFSDKPENFHVAIVEVTTS--N---TDGS---FK 81 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~------~~gy~V~-ta~-~a~EAL~~L~e~~~~pDLVIvDv~mP--d---~mdG---~~ 81 (572)
+++=|+.|+......+...++ +.||.|. .|. |...|- .+.+ -.+++| || . ..-| .+
T Consensus 94 iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak-~l~~--~G~~~v-----mPlg~pIGsg~gi~~~~ 165 (250)
T PRK00208 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAK-RLEE--AGCAAV-----MPLGAPIGSGLGLLNPY 165 (250)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH-HHHH--cCCCEe-----CCCCcCCCCCCCCCCHH
Confidence 566677766544444443333 3489888 444 445544 4444 467777 55 1 0111 45
Q ss_pred HHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe-----CCCCHHHHHHHHHHHHHH
Q 008254 82 FLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR-----KPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 82 lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~-----KPvs~eeL~~~~q~Vlrr 147 (572)
+++.++ ++|||+=.+....+.+.++++ +||+++++ |.-++..+..+..++++.
T Consensus 166 ~i~~i~e~~~vpVIveaGI~tpeda~~Ame-------------lGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 166 NLRIIIEQADVPVIVDAGIGTPSDAAQAME-------------LGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred HHHHHHHhcCCeEEEeCCCCCHHHHHHHHH-------------cCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 566664 799999999999999999999 99999976 445566777766666654
No 111
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=82.68 E-value=5.3 Score=41.43 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=71.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHH------hCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCC--C---CCCh---HHH
Q 008254 18 LRVLLLDQDSSAAAELKFKLE------AMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS--N---TDGS---FKF 82 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~------~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mP--d---~mdG---~~l 82 (572)
+++=|+.|+......+...++ +.||.|. .|.+--..-+.+.+ -.+++| || . ..-| .++
T Consensus 94 iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~--~G~~~v-----mPlg~pIGsg~Gi~~~~~ 166 (248)
T cd04728 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLED--AGCAAV-----MPLGSPIGSGQGLLNPYN 166 (248)
T ss_pred EEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH--cCCCEe-----CCCCcCCCCCCCCCCHHH
Confidence 566677766655444444443 3489887 44444444444444 467777 55 1 0111 466
Q ss_pred HHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe-----CCCCHHHHHHHHHHHHHH
Q 008254 83 LETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR-----KPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 83 Le~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~-----KPvs~eeL~~~~q~Vlrr 147 (572)
++.++ ++|||+=.+....+.+.++++ +||+++++ |.-++..+..+...++..
T Consensus 167 I~~I~e~~~vpVI~egGI~tpeda~~Ame-------------lGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 167 LRIIIERADVPVIVDAGIGTPSDAAQAME-------------LGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred HHHHHHhCCCcEEEeCCCCCHHHHHHHHH-------------cCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 66665 699999999999999999999 99999976 445566666666666654
No 112
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=82.55 E-value=22 Score=34.52 Aligned_cols=107 Identities=11% Similarity=0.087 Sum_probs=67.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIi 93 (572)
.++++|+.+... ...+..++...+. .|......++..+.+.. .|++|+-....+ -|..+++.+. .+|||+
T Consensus 209 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~i~ps~~e~--~~~~~~Ea~a~G~Pvi~ 281 (348)
T cd03820 209 DWKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYAK----ASIFVLTSRFEG--FPMVLLEAMAFGLPVIS 281 (348)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHHh----CCEEEeCccccc--cCHHHHHHHHcCCCEEE
Confidence 467777776443 3344455555443 44444444555566655 578887655433 4788888886 899886
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
......... .+. .|..+++.++.+.+++.+.+..++.
T Consensus 282 ~~~~~~~~~---~~~-------------~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 282 FDCPTGPSE---IIE-------------DGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred ecCCCchHh---hhc-------------cCcceEEeCCCCHHHHHHHHHHHHc
Confidence 543332222 223 5668999999999999999988865
No 113
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=81.27 E-value=16 Score=37.72 Aligned_cols=106 Identities=15% Similarity=0.162 Sum_probs=67.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIi 93 (572)
.++++++.+.+. .+.+...++..+. .|.......+..+.+.. .|++|+=-. .. .-|..+++.+. .+|||+
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~pS~-~E-g~~~~~lEAma~G~Pvv~ 301 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQA----LDLFVLPSL-AE-GISNTILEAMASGLPVIA 301 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh----cCEEEeccc-cc-cCchHHHHHHHcCCCEEE
Confidence 467788876543 4566777766543 34433344455555554 577764222 22 24678888886 899986
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
|..+... +.+. .|..+++..+-+.++|.+++..++.
T Consensus 302 -s~~~g~~---e~i~-------------~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 302 -TAVGGNP---ELVQ-------------HGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred -cCCCCcH---HHhc-------------CCCceEEeCCCCHHHHHHHHHHHHh
Confidence 4433322 2333 6888999999999999999887765
No 114
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=80.96 E-value=15 Score=39.45 Aligned_cols=110 Identities=14% Similarity=0.096 Sum_probs=67.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCE---------------EEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHH
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYI---------------VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFK 81 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~---------------V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~ 81 (572)
.++++||.+.+.....|..+++..|.. |....+..+....+.. .|++++--.... ..|..
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~----aDi~~v~~S~~e-~~g~~ 336 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAI----ADIAFVGGSLVK-RGGHN 336 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHh----CCEEEECCCcCC-CCCCC
Confidence 467888888776556788888776653 2233333454455544 578666333323 35666
Q ss_pred HHHHhc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 82 FLETAK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 82 lLe~Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
++|.+. .+|||......+...+.+.+. ..+++..+-+.++|.+++..++.
T Consensus 337 ~lEAma~G~PVI~g~~~~~~~e~~~~~~---------------~~g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 337 PLEPAAFGVPVISGPHTFNFKEIFERLL---------------QAGAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHHhCCCEEECCCccCHHHHHHHHH---------------HCCCeEEECCHHHHHHHHHHHhc
Confidence 788776 899986433344444434332 22466668899999998888765
No 115
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=80.79 E-value=13 Score=43.87 Aligned_cols=114 Identities=12% Similarity=0.104 Sum_probs=75.6
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCC-hHHHHHHhc--
Q 008254 18 LRVLLL----DQDSSAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK-- 87 (572)
Q Consensus 18 lRVLVV----DDD~~~~~~L~~lL~~~gy~V~t---a~~a~EAL~~L~e~~~~pDLVIvDv~mPd~md-G~~lLe~Ir-- 87 (572)
.+|++. |.+..-...+..+|+..||+|.. +.+.+++++.+.+ ...|+|++-..+...+. .-.+++.++
T Consensus 583 pkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~--~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~ 660 (714)
T PRK09426 583 PRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVE--NDVHVVGVSSLAAGHKTLVPALIEALKKL 660 (714)
T ss_pred ceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHH--cCCCEEEEeccchhhHHHHHHHHHHHHhc
Confidence 455543 44555667788888889999973 4578899999988 78898887655443122 234555555
Q ss_pred CCc-E-EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 88 DLP-T-IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 88 dlP-V-IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
..+ | |++.+.--.+....... .|+++|+---.+..+++..++..+.
T Consensus 661 G~~~v~vl~GG~~~~~~~~~l~~-------------aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 661 GREDIMVVVGGVIPPQDYDFLYE-------------AGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred CCCCcEEEEeCCCChhhHHHHHh-------------CCCCEEECCCCCHHHHHHHHHHHHH
Confidence 232 4 44554422333333344 9999999999999998887776664
No 116
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=79.86 E-value=25 Score=34.74 Aligned_cols=70 Identities=21% Similarity=0.329 Sum_probs=51.2
Q ss_pred EEEECCHHHHHHHhhcCCCCeeEEEEeCC-C------CCCCChHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhh
Q 008254 44 VSTFYNENEALSAFSDKPENFHVAIVEVT-T------SNTDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMN 113 (572)
Q Consensus 44 V~ta~~a~EAL~~L~e~~~~pDLVIvDv~-m------Pd~mdG~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~ 113 (572)
+..+.+.+++...... .+|++.+... . .. ...+++++.++ ++|||...+..+.+.+.+++.
T Consensus 127 iv~v~t~~ea~~a~~~---G~d~i~~~~~g~t~~~~~~~-~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~----- 197 (219)
T cd04729 127 MADISTLEEALNAAKL---GFDIIGTTLSGYTEETAKTE-DPDFELLKELRKALGIPVIAEGRINSPEQAAKALE----- 197 (219)
T ss_pred EEECCCHHHHHHHHHc---CCCEEEccCccccccccCCC-CCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH-----
Confidence 3466788888766655 5888865321 1 12 23467888776 799999999989999999999
Q ss_pred hhccccccCCccEEEeC
Q 008254 114 QLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 114 ~~~~~~~~~GA~dYL~K 130 (572)
.||+++++-
T Consensus 198 --------~GadgV~vG 206 (219)
T cd04729 198 --------LGADAVVVG 206 (219)
T ss_pred --------CCCCEEEEc
Confidence 999988764
No 117
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=79.78 E-value=2.6 Score=42.08 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=55.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCC--CCCCCC--hHHHHHHhc-CCcE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVT--TSNTDG--SFKFLETAK-DLPT 91 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~--mPd~md--G~~lLe~Ir-dlPV 91 (572)
+++||+||...++-=.|..+|++.|++|+++.+....+..++. ..||.||+--. .|. .. ..++++++. .+||
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~--~~pd~iviSPGPG~P~-d~G~~~~~i~~~~~~~Pi 77 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEA--LKPDAIVISPGPGTPK-DAGISLELIRRFAGRIPI 77 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhh--cCCCEEEEcCCCCChH-HcchHHHHHHHhcCCCCE
Confidence 4689999999999999999999999988877765444445665 67899887542 222 12 366777764 6898
Q ss_pred EEEe
Q 008254 92 IITS 95 (572)
Q Consensus 92 IiLS 95 (572)
+=+.
T Consensus 78 LGVC 81 (191)
T COG0512 78 LGVC 81 (191)
T ss_pred EEEC
Confidence 8664
No 118
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=79.29 E-value=19 Score=39.29 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=68.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEe
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITS 95 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS 95 (572)
.++++||.|.+. .+.|+.+.+.......-+-..++..+.+.. .|++|+=-. .. .-|+.++|.+. .+|||...
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~----aDv~V~pS~-~E-~~g~~vlEAmA~G~PVI~s~ 362 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS----GDVFVMPSE-SE-TLGFVVLEAMASGVPVVAAR 362 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH----CCEEEECCc-cc-ccCcHHHHHHHcCCCEEEcC
Confidence 467888887653 455666555432222223345677777766 577775322 23 34677888876 89998554
Q ss_pred CCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 96 NIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 96 ~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
. +.. .+.+. + .+.|-.+++..|-+.++|.+++..++.
T Consensus 363 ~-gg~---~eiv~-----~-----~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 363 A-GGI---PDIIP-----P-----DQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred C-CCc---Hhhhh-----c-----CCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 3 322 22233 0 013889999999999999999988875
No 119
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=79.27 E-value=5 Score=38.89 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=48.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCC------hHHHHHHhc-CCcEE
Q 008254 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDG------SFKFLETAK-DLPTI 92 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~md------G~~lLe~Ir-dlPVI 92 (572)
|||||....+--.|..+|+..|++|..+.+..--++.+.. ..||.||+ +++.++ -..+++.+. .+||+
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~--~~~~~iil---sgGP~~~~~~~~~~~~i~~~~~~~PiL 76 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQ--LAPSHLVI---SPGPCTPNEAGISLAVIRHFADKLPIL 76 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCeEEE---cCCCCChHhCCCchHHHHHhcCCCCEE
Confidence 8999999999999999999999988876654322344444 46777765 233122 234555543 78988
Q ss_pred EEe
Q 008254 93 ITS 95 (572)
Q Consensus 93 iLS 95 (572)
=+.
T Consensus 77 GIC 79 (191)
T PRK06774 77 GVC 79 (191)
T ss_pred EEC
Confidence 664
No 120
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=78.37 E-value=46 Score=32.85 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=50.9
Q ss_pred HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEE
Q 008254 50 ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFL 128 (572)
Q Consensus 50 a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL 128 (572)
.++..+.+.. .|++|+=-.... .-|..+++.+. .+|||.. .... ..+-+. .|..+++
T Consensus 253 ~~~~~~~~~~----ad~~i~ps~~~e-~~~~~~~Ea~a~G~Pvi~~-~~~~---~~e~i~-------------~~~~g~~ 310 (359)
T cd03823 253 QEEIDDFYAE----IDVLVVPSIWPE-NFPLVIREALAAGVPVIAS-DIGG---MAELVR-------------DGVNGLL 310 (359)
T ss_pred HHHHHHHHHh----CCEEEEcCcccC-CCChHHHHHHHCCCCEEEC-CCCC---HHHHhc-------------CCCcEEE
Confidence 3555555555 477775333233 45678888886 8998864 3333 223334 6778999
Q ss_pred eCCCCHHHHHHHHHHHHH
Q 008254 129 RKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 129 ~KPvs~eeL~~~~q~Vlr 146 (572)
.++-+.++|.+++..++.
T Consensus 311 ~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 311 FPPGDAEDLAAALERLID 328 (359)
T ss_pred ECCCCHHHHHHHHHHHHh
Confidence 999999999999988876
No 121
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=78.04 E-value=11 Score=37.16 Aligned_cols=68 Identities=12% Similarity=-0.057 Sum_probs=48.5
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCCh-HHHHHHhc
Q 008254 18 LRVLLL----DQDSSAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK 87 (572)
Q Consensus 18 lRVLVV----DDD~~~~~~L~~lL~~~gy~V~t---a~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG-~~lLe~Ir 87 (572)
-+|++. |.+..=...+..+|+..||+|+- -...++.++.+.+ ..||+|.+-+.|...+.. .++++.++
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~--~~pd~v~lS~~~~~~~~~~~~~i~~l~ 160 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK--EKPLMLTGSALMTTTMYGQKDINDKLK 160 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEccccccCHHHHHHHHHHHH
Confidence 355544 45566677788899999999984 4467889999998 899999999887752333 23444554
No 122
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=77.39 E-value=43 Score=35.63 Aligned_cols=108 Identities=7% Similarity=0.138 Sum_probs=64.7
Q ss_pred ccEEEEEeCCH--------HHHHHHHHHHHhCCCEEEEEC--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh
Q 008254 17 GLRVLLLDQDS--------SAAAELKFKLEAMDYIVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (572)
Q Consensus 17 ~lRVLVVDDD~--------~~~~~L~~lL~~~gy~V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I 86 (572)
.++++||.+.. ...+.+..+....+-.|.... +.++....+.. .|++++=-.... .-|..+++.+
T Consensus 224 ~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~----aDv~v~pS~~~E-~f~~~~lEAm 298 (380)
T PRK15484 224 NLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPL----ADLVVVPSQVEE-AFCMVAVEAM 298 (380)
T ss_pred CeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCCcc-ccccHHHHHH
Confidence 35677776532 233445545444444444333 34566666655 578776332223 2356677777
Q ss_pred c-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEE-EeCCCCHHHHHHHHHHHHH
Q 008254 87 K-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEF-LRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 87 r-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dY-L~KPvs~eeL~~~~q~Vlr 146 (572)
. .+|||.... +.. .+.+. .|..+| +..|.+.++|.+++..++.
T Consensus 299 a~G~PVI~s~~-gg~---~Eiv~-------------~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 299 AAGKPVLASTK-GGI---TEFVL-------------EGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred HcCCCEEEeCC-CCc---Hhhcc-------------cCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 6 899886543 332 22233 678888 5678999999998888775
No 123
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=76.62 E-value=26 Score=38.54 Aligned_cols=112 Identities=14% Similarity=0.175 Sum_probs=70.7
Q ss_pred ccEEEEEeC---CHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCc
Q 008254 17 GLRVLLLDQ---DSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP 90 (572)
Q Consensus 17 ~lRVLVVDD---D~~~~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlP 90 (572)
.++++|+.+ ++...+.++.++++.+. .|.... ..+..+.+.. .|++++--. .. .-|..+++.+. .+|
T Consensus 324 ~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~----aDv~vlpS~-~E-g~p~~vlEAma~G~P 396 (475)
T cd03813 324 DAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPK----LDVLVLTSI-SE-GQPLVILEAMAAGIP 396 (475)
T ss_pred CeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHh----CCEEEeCch-hh-cCChHHHHHHHcCCC
Confidence 467777754 34666777777777654 444444 4444455544 688876543 33 35788888886 899
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
||. |..+... +.+. +.-+. ..|.++++..|-+.++|.+++..++.
T Consensus 397 VVa-td~g~~~---elv~-----~~~~~--~~g~~G~lv~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 397 VVA-TDVGSCR---ELIE-----GADDE--ALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred EEE-CCCCChH---HHhc-----CCccc--ccCCceEEECCCCHHHHHHHHHHHhc
Confidence 986 4443322 2222 00000 13789999999999999999988875
No 124
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=76.23 E-value=12 Score=32.78 Aligned_cols=81 Identities=15% Similarity=0.086 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEEeCCC-CCCCChHHHHHHhc---CCcEEEEeCCC
Q 008254 26 DSSAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIVEVTT-SNTDGSFKFLETAK---DLPTIITSNIH 98 (572)
Q Consensus 26 D~~~~~~L~~lL~~~gy~V~ta---~~a~EAL~~L~e~~~~pDLVIvDv~m-Pd~mdG~~lLe~Ir---dlPVIiLS~~~ 98 (572)
.+.-...|..+|++.||+|..+ .+.++.++.+.+ .+||+|.+.+.+ +......++++.++ .-.+|++-+..
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~--~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRA--ERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHH--TTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhc--CCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 4567788999999999999866 345777788888 799999998844 33112345556665 12345555554
Q ss_pred ChHHHHHHHH
Q 008254 99 CLSTMMKCIA 108 (572)
Q Consensus 99 d~~~~~kai~ 108 (572)
-...-..+++
T Consensus 91 ~t~~~~~~l~ 100 (121)
T PF02310_consen 91 ATADPEEILR 100 (121)
T ss_dssp SGHHHHHHHH
T ss_pred hhcChHHHhc
Confidence 4333334443
No 125
>PRK14098 glycogen synthase; Provisional
Probab=75.53 E-value=25 Score=39.26 Aligned_cols=111 Identities=7% Similarity=0.009 Sum_probs=67.4
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEE
Q 008254 17 GLRVLLLDQDS-SAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTI 92 (572)
Q Consensus 17 ~lRVLVVDDD~-~~~~~L~~lL~~~gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVI 92 (572)
.++++|+.+-. ...+.|+.+.++.+-.|. ..-+..++...+.. .|++++=-. .. .-|+-.++.++ .+|+|
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~----aDi~l~PS~-~E-~~Gl~~lEAma~G~ppV 409 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAG----LDMLLMPGK-IE-SCGMLQMFAMSYGTIPV 409 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHh----CCEEEeCCC-CC-CchHHHHHHHhCCCCeE
Confidence 46778887643 345667766665543333 23344555555554 578775322 22 34677777776 57777
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
+....+..+++..... .|..+|+..+.+.++|.+++..++.
T Consensus 410 v~~~GGl~d~v~~~~~-------------~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 410 AYAGGGIVETIEEVSE-------------DKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred EecCCCCceeeecCCC-------------CCCceeEeCCCCHHHHHHHHHHHHH
Confidence 6544333333322222 4678999999999999998887664
No 126
>PRK12704 phosphodiesterase; Provisional
Probab=75.45 E-value=6.2 Score=44.81 Aligned_cols=47 Identities=9% Similarity=0.022 Sum_probs=40.0
Q ss_pred cEEEEeCCCChH--HHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLS--TMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 90 PVIiLS~~~d~~--~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
-+|++|+.+... ....++. .|+.|+..||++.+++...++.-+.+..
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~-------------~l~~dg~i~P~~iee~~~~~~~~~~~~~ 299 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALE-------------KLVQDGRIHPARIEEMVEKARKEVDEEI 299 (520)
T ss_pred CeEEEecCChhhHHHHHHHHH-------------HHHhcCCcCCCCHHHHHHHHHHHHHHHH
Confidence 388999988776 7788888 8999999999999999999988776553
No 127
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=75.28 E-value=43 Score=34.91 Aligned_cols=109 Identities=12% Similarity=0.111 Sum_probs=68.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEE---CCHHHHHHH-hhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTF---YNENEALSA-FSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DL 89 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta---~~a~EAL~~-L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dl 89 (572)
.+++++|.+.+. .+.+..+.+..+. .|... .+..+.+.. +.. .|++|+=-.. . .-|..++|.+. .+
T Consensus 210 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~----~d~~v~~s~~-E-gf~~~~lEAma~G~ 282 (359)
T PRK09922 210 EWQLHIIGDGSD-FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKN----VSALLLTSKF-E-GFPMTLLEAMSYGI 282 (359)
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhc----CcEEEECCcc-c-CcChHHHHHHHcCC
Confidence 578888877654 4566666666543 45433 233343333 333 4676653222 2 24778888886 89
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
|||..-..+... +.+. .|.++++..|-+.++|.+++..++...
T Consensus 283 Pvv~s~~~~g~~---eiv~-------------~~~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 283 PCISSDCMSGPR---DIIK-------------PGLNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred CEEEeCCCCChH---HHcc-------------CCCceEEECCCCHHHHHHHHHHHHhCc
Confidence 998543133322 3344 788999999999999999988877654
No 128
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=74.91 E-value=56 Score=32.90 Aligned_cols=107 Identities=13% Similarity=0.140 Sum_probs=66.8
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHHhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCc
Q 008254 17 GLRVLLLDQDS---SAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP 90 (572)
Q Consensus 17 ~lRVLVVDDD~---~~~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlP 90 (572)
.++++|+.+.. ...+.+...++..+. .|......++....+.. .|++|+=-.-.. .-|..+++.+. .+|
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~----ad~~i~ps~~~e-~~~~~l~EA~a~G~P 290 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL----ADIVVSASTEPE-AFGRTAVEAQAMGRP 290 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh----CCEEEecCCCCC-CCchHHHHHHhcCCC
Confidence 46777776543 234445555555443 35555444555555554 577776332334 45778888886 899
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHH
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVV 145 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vl 145 (572)
||+.. .... .+.+. .|.++++..+-+.++|.+++..++
T Consensus 291 vI~~~-~~~~---~e~i~-------------~~~~g~~~~~~~~~~l~~~i~~~~ 328 (355)
T cd03819 291 VIASD-HGGA---RETVR-------------PGETGLLVPPGDAEALAQALDQIL 328 (355)
T ss_pred EEEcC-CCCc---HHHHh-------------CCCceEEeCCCCHHHHHHHHHHHH
Confidence 98643 3332 33344 677899999999999999886444
No 129
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=74.70 E-value=44 Score=29.04 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=28.5
Q ss_pred CCChHHHHHHHHHHHhhhhccccccCCccEEEeCCC--CHHHHHHHHHHHHH
Q 008254 97 IHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDKLRNLWQHVVH 146 (572)
Q Consensus 97 ~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~eeL~~~~q~Vlr 146 (572)
....+.+.++++ .|..=|+-||+ +.+++..+++.+-+
T Consensus 73 ~~h~~~~~~~l~-------------~g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 73 SSHAEIAKKALE-------------AGKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp GGHHHHHHHHHH-------------TTSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHH-------------cCCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 344577788888 99999999999 88888886665443
No 130
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=73.54 E-value=15 Score=36.78 Aligned_cols=60 Identities=10% Similarity=0.199 Sum_probs=48.5
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHhhcCC--CCeeEEEEeCC
Q 008254 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKP--ENFHVAIVEVT 72 (572)
Q Consensus 13 ~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~-ta~~a~EAL~~L~e~~--~~pDLVIvDv~ 72 (572)
.+|.+-+|.-||-++...+.-+..++..|+ .|. ...++.+.|..+.... ..||+|++|..
T Consensus 66 ~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 66 ALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp TSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred hhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 466777999999999999999999999987 444 6788999998776421 36999999985
No 131
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=71.27 E-value=36 Score=31.03 Aligned_cols=108 Identities=16% Similarity=0.225 Sum_probs=68.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECC--HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYN--ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPT 91 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~~--a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPV 91 (572)
.++++|+.+.. ....+..+.+..+. .+..+.. .++..++++. .|++|+=... + .-|..+++.+. .+||
T Consensus 47 ~~~l~i~G~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e-~~~~~~~Ea~~~g~pv 119 (172)
T PF00534_consen 47 NYKLVIVGDGE-YKKELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-E-GFGLSLLEAMACGCPV 119 (172)
T ss_dssp TEEEEEESHCC-HHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-B-SS-HHHHHHHHTT-EE
T ss_pred CeEEEEEcccc-ccccccccccccccccccccccccccccccccccc----ceeccccccc-c-ccccccccccccccce
Confidence 35777777333 23335555555543 3443333 3466777766 5777765444 4 46788888886 7887
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
|+ +..+. ..+.+. .+..+|+..+.+.++|.+++..++...
T Consensus 120 I~-~~~~~---~~e~~~-------------~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 120 IA-SDIGG---NNEIIN-------------DGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp EE-ESSTH---HHHHSG-------------TTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred ee-ccccC---Cceeec-------------cccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 74 44332 233344 677999999999999999999888764
No 132
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=71.22 E-value=55 Score=31.73 Aligned_cols=106 Identities=13% Similarity=0.224 Sum_probs=65.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEE--EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPT 91 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPV 91 (572)
.++++++.+. .....+..+++..+. .|. -.-+.++..+++.. .|++|+-... + .-|..+++.+. .+||
T Consensus 230 ~~~l~i~G~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~----~di~i~~~~~-~-~~~~~~~Ea~~~g~pv 302 (374)
T cd03801 230 DVRLVIVGDG-PLREELEALAAELGLGDRVTFLGFVPDEDLPALYAA----ADVFVLPSLY-E-GFGLVLLEAMAAGLPV 302 (374)
T ss_pred CeEEEEEeCc-HHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHh----cCEEEecchh-c-cccchHHHHHHcCCcE
Confidence 3667777643 344455555433322 233 33344677777766 5777764433 3 35778888886 8998
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
|.... ... .+.+. .+-.+++..+.+.++|.+.+..++.
T Consensus 303 I~~~~-~~~---~~~~~-------------~~~~g~~~~~~~~~~l~~~i~~~~~ 340 (374)
T cd03801 303 VASDV-GGI---PEVVE-------------DGETGLLVPPGDPEALAEAILRLLD 340 (374)
T ss_pred EEeCC-CCh---hHHhc-------------CCcceEEeCCCCHHHHHHHHHHHHc
Confidence 76543 222 22233 5778899999999999998888765
No 133
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=71.15 E-value=36 Score=29.96 Aligned_cols=68 Identities=13% Similarity=0.251 Sum_probs=40.5
Q ss_pred EEeCCHHHHHHHHHHHHhCCCEEEEEC---------------------CHHHHHHHhhcCCCCeeEEEEeCC--CCCCCC
Q 008254 22 LLDQDSSAAAELKFKLEAMDYIVSTFY---------------------NENEALSAFSDKPENFHVAIVEVT--TSNTDG 78 (572)
Q Consensus 22 VVDDD~~~~~~L~~lL~~~gy~V~ta~---------------------~a~EAL~~L~e~~~~pDLVIvDv~--mPd~md 78 (572)
+-|.+......+...|...||.+.... ...++++++++ +.+|+||.-.. ... .+
T Consensus 7 ~~~~~k~~~~~~~~~l~~~G~~l~aT~gT~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~--~~id~vIn~~~~~~~~-~~ 83 (110)
T cd01424 7 VADRDKPEAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKN--GEIQLVINTPSGKRAI-RD 83 (110)
T ss_pred EEcCcHhHHHHHHHHHHHCCCEEEEchHHHHHHHHcCCeEEEEeecCCCchhHHHHHHc--CCeEEEEECCCCCccC-cc
Confidence 345555566677777777888876432 12456666666 67888876432 112 25
Q ss_pred hHHHHHHhc--CCcEE
Q 008254 79 SFKFLETAK--DLPTI 92 (572)
Q Consensus 79 G~~lLe~Ir--dlPVI 92 (572)
|+.+.+..- .+|++
T Consensus 84 ~~~iRR~Av~~~ipl~ 99 (110)
T cd01424 84 GFSIRRAALEYKVPYF 99 (110)
T ss_pred HHHHHHHHHHhCCCEE
Confidence 675555443 67765
No 134
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=69.80 E-value=61 Score=33.98 Aligned_cols=106 Identities=12% Similarity=0.107 Sum_probs=70.4
Q ss_pred cEEEEEeC---CH-HHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-C
Q 008254 18 LRVLLLDQ---DS-SAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-D 88 (572)
Q Consensus 18 lRVLVVDD---D~-~~~~~L~~lL~~~gy--~V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-d 88 (572)
++++++.+ +. ...+.+..+.+..+. .|.... +.++..+.+.. .|++++-.. .. .-|..+++.+. .
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad~~v~ps~-~E-~~g~~~lEAma~G 326 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRA----ADVVAVPSY-NE-SFGLVAMEAQACG 326 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHh----CCEEEECCC-CC-CcChHHHHHHHcC
Confidence 67778864 22 445667777776654 354433 44666666665 577776433 33 35778888886 8
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 89 LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
+|||.....+. .+.+. .|..+++..|-+.++|.+++..++.
T Consensus 327 ~Pvi~~~~~~~----~e~i~-------------~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 327 TPVVAARVGGL----PVAVA-------------DGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred CCEEEecCCCc----Hhhhc-------------cCCceEECCCCCHHHHHHHHHHHHh
Confidence 99987554322 22344 7888999999999999998888775
No 135
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=69.55 E-value=5.2 Score=39.37 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=48.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCC------hHHHHHHhc-CCcEE
Q 008254 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDG------SFKFLETAK-DLPTI 92 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~md------G~~lLe~Ir-dlPVI 92 (572)
|||||....+--.|...|++.|+++.+....+..++.+.. ..||.||+- ++.++ -.++++.+. ++||+
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iIls---gGP~~p~~~~~~~~~i~~~~~~~PvL 76 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIEN--MKPDFLMIS---PGPCSPNEAGISMEVIRYFAGKIPIF 76 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhh--CCCCEEEEC---CCCCChHhCCCchHHHHHhcCCCCEE
Confidence 8999999999999999999999988876655434444555 568887762 33122 133444433 67877
Q ss_pred EEe
Q 008254 93 ITS 95 (572)
Q Consensus 93 iLS 95 (572)
-+.
T Consensus 77 GIC 79 (195)
T PRK07649 77 GVC 79 (195)
T ss_pred EEc
Confidence 653
No 136
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=69.45 E-value=33 Score=33.06 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=53.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCEEEEE-------CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAM--DYIVSTF-------YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~--gy~V~ta-------~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I 86 (572)
++.+|.++...+...+.+...|++. +.+++.+ .+..+.++.+.+ ..+|+|++-+.+|. . -.++...
T Consensus 45 ~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~--~~pdiv~vglG~Pk-Q--E~~~~~~ 119 (171)
T cd06533 45 KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINA--SGADILFVGLGAPK-Q--ELWIARH 119 (171)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHH--cCCCEEEEECCCCH-H--HHHHHHH
Confidence 3689999999999999999888876 4455532 123345788888 78999999999998 3 3455555
Q ss_pred c---CCcEEEE
Q 008254 87 K---DLPTIIT 94 (572)
Q Consensus 87 r---dlPVIiL 94 (572)
+ ..+|++.
T Consensus 120 ~~~l~~~v~~~ 130 (171)
T cd06533 120 KDRLPVPVAIG 130 (171)
T ss_pred HHHCCCCEEEE
Confidence 4 4555544
No 137
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=69.34 E-value=43 Score=34.56 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=43.6
Q ss_pred eeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHH
Q 008254 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQ 142 (572)
Q Consensus 64 pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q 142 (572)
.|++|+=-. .+ .-|+.+++.+. .+|||......... +.+. .|..+||..+-+.++|.+++.
T Consensus 279 ad~~v~~S~-~E-g~~~~~lEAma~G~PvI~~~~~~g~~---~~v~-------------~~~~G~lv~~~d~~~la~~i~ 340 (372)
T cd04949 279 AQLSLLTSQ-SE-GFGLSLMEALSHGLPVISYDVNYGPS---EIIE-------------DGENGYLVPKGDIEALAEAII 340 (372)
T ss_pred hhEEEeccc-cc-ccChHHHHHHhCCCCEEEecCCCCcH---HHcc-------------cCCCceEeCCCcHHHHHHHHH
Confidence 355554222 23 34677888876 89988754321111 2233 788999999999999999988
Q ss_pred HHHHH
Q 008254 143 HVVHK 147 (572)
Q Consensus 143 ~Vlrr 147 (572)
.++..
T Consensus 341 ~ll~~ 345 (372)
T cd04949 341 ELLND 345 (372)
T ss_pred HHHcC
Confidence 88753
No 138
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=69.23 E-value=55 Score=33.34 Aligned_cols=105 Identities=10% Similarity=0.119 Sum_probs=66.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIIT 94 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiL 94 (572)
.+++|+.+... ...++.+++..+. .|......++..+.+.. .|++|+=.. .+ .-|..+++.+. .+|||..
T Consensus 228 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----~d~~v~ps~-~E-~~~~~~~EAma~g~PvI~s 300 (371)
T cd04962 228 ARLLLVGDGPE-RSPAERLARELGLQDDVLFLGKQDHVEELLSI----ADLFLLPSE-KE-SFGLAALEAMACGVPVVAS 300 (371)
T ss_pred ceEEEEcCCcC-HHHHHHHHHHcCCCceEEEecCcccHHHHHHh----cCEEEeCCC-cC-CCccHHHHHHHcCCCEEEe
Confidence 56777765543 3456666665543 45544444454455544 577776433 33 35778888886 8998874
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
.. +. ..+.+. .|..+|+..+-+.++|.+++..++.
T Consensus 301 ~~-~~---~~e~i~-------------~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 301 NA-GG---IPEVVK-------------HGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred CC-CC---chhhhc-------------CCCceEEcCCCCHHHHHHHHHHHHh
Confidence 33 32 233444 7888999999999999998887764
No 139
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=68.90 E-value=90 Score=32.23 Aligned_cols=86 Identities=16% Similarity=0.045 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhCCCEE-EEECCHHHHHHHhhcCCCCeeEEEEeCC---CCCCCChHHHHHHhc-----CCcEEEEeCC
Q 008254 27 SSAAAELKFKLEAMDYIV-STFYNENEALSAFSDKPENFHVAIVEVT---TSNTDGSFKFLETAK-----DLPTIITSNI 97 (572)
Q Consensus 27 ~~~~~~L~~lL~~~gy~V-~ta~~a~EAL~~L~e~~~~pDLVIvDv~---mPd~mdG~~lLe~Ir-----dlPVIiLS~~ 97 (572)
...++.+-...+..|..+ +.+.+.+|+..++.. .+|+|-+.-. ... .+ ++...++. +.++|..++.
T Consensus 146 ~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~---gadiIgin~rdl~~~~-~d-~~~~~~l~~~~p~~~~vIaegGI 220 (260)
T PRK00278 146 DEQLKELLDYAHSLGLDVLVEVHDEEELERALKL---GAPLIGINNRNLKTFE-VD-LETTERLAPLIPSDRLVVSESGI 220 (260)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCccccc-CC-HHHHHHHHHhCCCCCEEEEEeCC
Confidence 334455555555667765 478888888776644 6787765421 111 12 44444442 3588999999
Q ss_pred CChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 98 HCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 98 ~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
.+.+.+.++.. .||+++++-
T Consensus 221 ~t~ed~~~~~~-------------~Gad~vlVG 240 (260)
T PRK00278 221 FTPEDLKRLAK-------------AGADAVLVG 240 (260)
T ss_pred CCHHHHHHHHH-------------cCCCEEEEC
Confidence 99999999999 999998763
No 140
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=68.53 E-value=44 Score=35.36 Aligned_cols=82 Identities=17% Similarity=0.065 Sum_probs=59.8
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCC----CCChHHHHHHhc---CCcEEEEeCCCChHHHH
Q 008254 33 LKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN----TDGSFKFLETAK---DLPTIITSNIHCLSTMM 104 (572)
Q Consensus 33 L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd----~mdG~~lLe~Ir---dlPVIiLS~~~d~~~~~ 104 (572)
+-..|+..|..|. .+.+.++|..+.+. ..|.|++.-.-.+ ...-+.++.+++ ++|||+--+..+...+.
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~---GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~ 177 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKA---GADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMA 177 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHc---CCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHH
Confidence 4455666676554 67788888776655 6899988543222 023478888886 79999988899999999
Q ss_pred HHHHHHHhhhhccccccCCccEEEeC
Q 008254 105 KCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 105 kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
+++. .||++..+=
T Consensus 178 ~al~-------------~GA~gV~iG 190 (307)
T TIGR03151 178 AAFA-------------LGAEAVQMG 190 (307)
T ss_pred HHHH-------------cCCCEeecc
Confidence 9999 999988764
No 141
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=68.39 E-value=19 Score=35.21 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=39.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---EEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDY---IVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy---~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
-+|..||-+......|+.-++..+. ..+...+...++..+......||+|++|-
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP 122 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP 122 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC
Confidence 4899999999999999999998874 34467788888877743227899999994
No 142
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=68.14 E-value=13 Score=34.86 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=28.3
Q ss_pred HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh--cCCcEEEEeCC
Q 008254 50 ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIITSNI 97 (572)
Q Consensus 50 a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I--rdlPVIiLS~~ 97 (572)
..++++.++. ..+|+||+|. ++ .. ...+..+ .|..+|+++..
T Consensus 80 ~~~~~~~~~~--~~~D~iiIDt--aG-~~-~~~~~~~~~Ad~~ivv~tpe 123 (148)
T cd03114 80 TPEVIRVLDA--AGFDVIIVET--VG-VG-QSEVDIASMADTTVVVMAPG 123 (148)
T ss_pred HHHHHHHHHh--cCCCEEEEEC--Cc-cC-hhhhhHHHhCCEEEEEECCC
Confidence 4667777776 6899999998 65 22 2223333 37788877776
No 143
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=67.49 E-value=81 Score=32.22 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=38.7
Q ss_pred eeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeCC----CChHHHHHHHHHHHhhhhccccccCCccEEEeCCC--CHHH
Q 008254 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNI----HCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDK 136 (572)
Q Consensus 64 pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~~----~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~ee 136 (572)
.|++|+. ..+..+++.+. .+|||++... .......+.+. .+-.++++.+- +.++
T Consensus 253 ad~~v~~------sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~-------------~~g~g~~v~~~~~~~~~ 313 (350)
T cd03785 253 ADLVISR------AGASTVAELAALGLPAILIPLPYAADDHQTANARALV-------------KAGAAVLIPQEELTPER 313 (350)
T ss_pred cCEEEEC------CCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHH-------------hCCCEEEEecCCCCHHH
Confidence 5777751 13456677765 8999886432 12222223333 23357888765 8999
Q ss_pred HHHHHHHHHH
Q 008254 137 LRNLWQHVVH 146 (572)
Q Consensus 137 L~~~~q~Vlr 146 (572)
|.+++..++.
T Consensus 314 l~~~i~~ll~ 323 (350)
T cd03785 314 LAAALLELLS 323 (350)
T ss_pred HHHHHHHHhc
Confidence 9998887765
No 144
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=67.17 E-value=46 Score=35.12 Aligned_cols=108 Identities=17% Similarity=0.122 Sum_probs=66.5
Q ss_pred ccEEEEEeCCH-----------HHHHHHHHHHHh-CC-CEEEEEC--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHH
Q 008254 17 GLRVLLLDQDS-----------SAAAELKFKLEA-MD-YIVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFK 81 (572)
Q Consensus 17 ~lRVLVVDDD~-----------~~~~~L~~lL~~-~g-y~V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~ 81 (572)
.++++||.++. ..++.+...+.. .+ -.|.... +.++..+.+.. .|+.++ ...+. .-|..
T Consensus 243 ~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~----adv~v~-~s~~e-~~~~~ 316 (396)
T cd03818 243 DARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQV----SDVHVY-LTYPF-VLSWS 316 (396)
T ss_pred CcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHh----CcEEEE-cCccc-ccchH
Confidence 47788888632 123333333322 11 2344333 34666677766 466664 23455 45678
Q ss_pred HHHHhc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 82 FLETAK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 82 lLe~Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
++|.+. .+|||.. ..+. +.+.+. .|..+++..+-+.++|.+++..++..
T Consensus 317 llEAmA~G~PVIas-~~~g---~~e~i~-------------~~~~G~lv~~~d~~~la~~i~~ll~~ 366 (396)
T cd03818 317 LLEAMACGCLVVGS-DTAP---VREVIT-------------DGENGLLVDFFDPDALAAAVIELLDD 366 (396)
T ss_pred HHHHHHCCCCEEEc-CCCC---chhhcc-------------cCCceEEcCCCCHHHHHHHHHHHHhC
Confidence 888886 8999864 3333 223334 78889999999999999999888753
No 145
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=66.81 E-value=91 Score=31.68 Aligned_cols=107 Identities=13% Similarity=0.143 Sum_probs=67.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEeCCC-C----CCCChHHHHHHhc
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTT-S----NTDGSFKFLETAK 87 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~m-P----d~mdG~~lLe~Ir 87 (572)
.++++|+.+.+. ...++.+.+..|. .|.... +.++..+.+.. .|++|+=... + . .-|..+++.+.
T Consensus 219 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----ad~~v~ps~~~~~~~~E-~~~~~~~EA~a 292 (367)
T cd05844 219 EVRLVIIGDGPL-LAALEALARALGLGGRVTFLGAQPHAEVRELMRR----ARIFLQPSVTAPSGDAE-GLPVVLLEAQA 292 (367)
T ss_pred CeEEEEEeCchH-HHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHh----CCEEEECcccCCCCCcc-CCchHHHHHHH
Confidence 467888887543 3456666666443 444333 33556666665 5676653221 1 1 13678888886
Q ss_pred -CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 88 -DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 88 -dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
.+|||.... .. ..+.+. .|-.+++..+-+.++|.+++..++.
T Consensus 293 ~G~PvI~s~~-~~---~~e~i~-------------~~~~g~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 293 SGVPVVATRH-GG---IPEAVE-------------DGETGLLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred cCCCEEEeCC-CC---chhhee-------------cCCeeEEECCCCHHHHHHHHHHHHc
Confidence 899986433 22 222233 6778899999999999998888775
No 146
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=65.17 E-value=59 Score=36.48 Aligned_cols=105 Identities=10% Similarity=0.069 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHhCC-CEEEEEC------CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEEE
Q 008254 26 DSSAAAELKFKLEAMD-YIVSTFY------NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIIT 94 (572)
Q Consensus 26 D~~~~~~L~~lL~~~g-y~V~ta~------~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIiL 94 (572)
.+.-+..|...|+..| ++|..+. +.++..+.+.+ ..||+|.+-...+......++++.+| +++|| +
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~--~~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV-~ 97 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRA--HCPDLVLITAITPAIYIACETLKFARERLPNAIIV-L 97 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHh--cCcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEE-E
Confidence 4667788999999999 5776543 34455566777 78999998776555123455666665 44444 4
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHH
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVV 145 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vl 145 (572)
-+.+-...-.+++. +....||++.--..+.+.+.++.+.
T Consensus 98 GG~h~t~~~~~~l~------------~~p~vD~Vv~GEGE~~~~~Ll~~l~ 136 (497)
T TIGR02026 98 GGIHPTFMFHQVLT------------EAPWIDFIVRGEGEETVVKLIAALE 136 (497)
T ss_pred cCCCcCcCHHHHHh------------cCCCccEEEeCCcHHHHHHHHHHHH
Confidence 44443222334443 1456789999888888888776653
No 147
>PLN02275 transferase, transferring glycosyl groups
Probab=65.01 E-value=93 Score=32.91 Aligned_cols=104 Identities=14% Similarity=0.169 Sum_probs=66.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-EEEEEC---CHHHHHHHhhcCCCCeeEEEEeC-CCCCCCChHHHHHHhc-CCc
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY-IVSTFY---NENEALSAFSDKPENFHVAIVEV-TTSNTDGSFKFLETAK-DLP 90 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy-~V~ta~---~a~EAL~~L~e~~~~pDLVIvDv-~mPd~mdG~~lLe~Ir-dlP 90 (572)
.++.+||.|-+. ++.|+.++++.|. +|..+. ..++.-..+.. .|+.++=. ...+..-+..+++.+. .+|
T Consensus 261 ~i~l~ivG~G~~-~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~----aDv~v~~~~s~~~e~~p~~llEAmA~G~P 335 (371)
T PLN02275 261 RLLFIITGKGPQ-KAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGS----ADLGVSLHTSSSGLDLPMKVVDMFGCGLP 335 (371)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHh----CCEEEEeccccccccccHHHHHHHHCCCC
Confidence 488999998764 5778888887765 344322 35666666666 57776410 1111012567888776 899
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHH
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHV 144 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~V 144 (572)
||... .+. ..+.+. .|.++|+.. +.++|.+++..+
T Consensus 336 VVa~~-~gg---~~eiv~-------------~g~~G~lv~--~~~~la~~i~~l 370 (371)
T PLN02275 336 VCAVS-YSC---IGELVK-------------DGKNGLLFS--SSSELADQLLEL 370 (371)
T ss_pred EEEec-CCC---hHHHcc-------------CCCCeEEEC--CHHHHHHHHHHh
Confidence 98754 333 233444 788999985 578888876654
No 148
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=64.77 E-value=1.1e+02 Score=33.15 Aligned_cols=107 Identities=13% Similarity=0.143 Sum_probs=70.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEeCCCC---CCCC--hHHHHHHhc
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTTS---NTDG--SFKFLETAK 87 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~mP---d~md--G~~lLe~Ir 87 (572)
.++++|+.+.+. .+.|+.+++..|. .|.... +.++..+.+.. .|++|+=.... + .+ +..++|.+.
T Consensus 253 ~~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~-~Eg~p~~llEAma 326 (406)
T PRK15427 253 AFRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGD-MEGIPVALMEAMA 326 (406)
T ss_pred CEEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCC-ccCccHHHHHHHh
Confidence 367778887653 4667777777654 344332 45666677766 57777532211 1 13 466788776
Q ss_pred -CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 88 -DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 88 -dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
.+|||... .+. +.+.+. .|..+++..|-+.++|.+++..++.
T Consensus 327 ~G~PVI~t~-~~g---~~E~v~-------------~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 VGIPVVSTL-HSG---IPELVE-------------ADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCCCEEEeC-CCC---chhhhc-------------CCCceEEeCCCCHHHHHHHHHHHHh
Confidence 89998643 333 223344 7889999999999999999988876
No 149
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=64.66 E-value=92 Score=32.59 Aligned_cols=106 Identities=15% Similarity=0.185 Sum_probs=58.0
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHH---HHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---
Q 008254 17 GLRVLLLDQDSS---AAAELKFKLEAMDYIVSTFYNENE---ALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--- 87 (572)
Q Consensus 17 ~lRVLVVDDD~~---~~~~L~~lL~~~gy~V~ta~~a~E---AL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--- 87 (572)
+.+|.+++-|.. ....++...+..++.+..+.+..+ +++.+... ..+|+||+|.-=-. ....+.++++.
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~D~ViIDt~Gr~-~~~~~~l~el~~~~ 180 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE-ARVDYILIDTAGKN-YRASETVEEMIETM 180 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc-CCCCEEEEECCCCC-cCCHHHHHHHHHHH
Confidence 457888877654 344455555556888877666544 44444431 36899999973211 11222333331
Q ss_pred -----CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCC
Q 008254 88 -----DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLS 133 (572)
Q Consensus 88 -----dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs 133 (572)
+..++++++......+.+.++ .|. ..+.+++|.-=++
T Consensus 181 ~~~~~~~~~LVl~a~~~~~d~~~~~~------~f~---~~~~~~~I~TKlD 222 (270)
T PRK06731 181 GQVEPDYICLTLSASMKSKDMIEIIT------NFK---DIHIDGIVFTKFD 222 (270)
T ss_pred hhhCCCeEEEEEcCccCHHHHHHHHH------HhC---CCCCCEEEEEeec
Confidence 233556776655555555444 122 2677777665443
No 150
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=64.45 E-value=75 Score=32.83 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=66.4
Q ss_pred ccEEEEEeC---CHHHHHHHHHHHHhCCC---EEEEE---CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc
Q 008254 17 GLRVLLLDQ---DSSAAAELKFKLEAMDY---IVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (572)
Q Consensus 17 ~lRVLVVDD---D~~~~~~L~~lL~~~gy---~V~ta---~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir 87 (572)
..+++++.+ .....+.++..+...+. .|..+ -+.++....+.. .|++|+=.. .+ .-|..+++.+.
T Consensus 229 ~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----aDv~v~ps~-~e-~~g~~~lEA~a 302 (388)
T TIGR02149 229 DVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSN----AEVFVCPSI-YE-PLGIVNLEAMA 302 (388)
T ss_pred cCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHh----CCEEEeCCc-cC-CCChHHHHHHH
Confidence 456666533 34455666666665533 24332 245666666665 688776322 23 35777788876
Q ss_pred -CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCH------HHHHHHHHHHHH
Q 008254 88 -DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSE------DKLRNLWQHVVH 146 (572)
Q Consensus 88 -dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~------eeL~~~~q~Vlr 146 (572)
.+|||+.. .+. +.+.+. .|..+++..+-+. ++|.+++..++.
T Consensus 303 ~G~PvI~s~-~~~---~~e~i~-------------~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~ 351 (388)
T TIGR02149 303 CGTPVVASA-TGG---IPEVVV-------------DGETGFLVPPDNSDADGFQAELAKAINILLA 351 (388)
T ss_pred cCCCEEEeC-CCC---HHHHhh-------------CCCceEEcCCCCCcccchHHHHHHHHHHHHh
Confidence 89988643 332 233344 7888999998887 788887777664
No 151
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.28 E-value=61 Score=34.24 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=60.8
Q ss_pred CCCccEEEEEeC-----CHHHHHHHHHHHHhCCCEEEEECCHHHHHH-----Hh--hcCCCCeeEEEEeCCCCCCCCh--
Q 008254 14 FPKGLRVLLLDQ-----DSSAAAELKFKLEAMDYIVSTFYNENEALS-----AF--SDKPENFHVAIVEVTTSNTDGS-- 79 (572)
Q Consensus 14 ~p~~lRVLVVDD-----D~~~~~~L~~lL~~~gy~V~ta~~a~EAL~-----~L--~e~~~~pDLVIvDv~mPd~mdG-- 79 (572)
||.+.+|.|+-. .....+.+...|++.++++.......+.+. .. ......+|+||+ + + .||
T Consensus 1 ~~~~~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~---~-G-GDGt~ 75 (295)
T PRK01231 1 MPSFRNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV---V-G-GDGSL 75 (295)
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE---E-e-CcHHH
Confidence 466667888833 223455667777788888876543322211 00 110124788876 2 2 355
Q ss_pred HHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 80 FKFLETAK--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 80 ~~lLe~Ir--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
+..++.+. ++||+-+. .|=.+||. .++.+++.++++.+++..
T Consensus 76 l~~~~~~~~~~~Pvlgin--------------------------~G~lGFl~-~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 76 LGAARALARHNVPVLGIN--------------------------RGRLGFLT-DIRPDELEFKLAEVLDGH 119 (295)
T ss_pred HHHHHHhcCCCCCEEEEe--------------------------CCcccccc-cCCHHHHHHHHHHHHcCC
Confidence 33344432 67877553 45566774 788999999888888754
No 152
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=64.13 E-value=71 Score=33.41 Aligned_cols=96 Identities=7% Similarity=0.062 Sum_probs=62.4
Q ss_pred HHHHHHHHhCCCEE--EEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-----CCcEEEEeCCCChHHH
Q 008254 31 AELKFKLEAMDYIV--STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTIITSNIHCLSTM 103 (572)
Q Consensus 31 ~~L~~lL~~~gy~V--~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-----dlPVIiLS~~~d~~~~ 103 (572)
..|+..|+.-...+ ........+.+.+.. ..||.|++|+.-.. .+--++...++ .+..|+=....+...+
T Consensus 7 n~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~--~GfD~v~iD~EHg~-~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i 83 (267)
T PRK10128 7 NPFKEGLRKGEVQIGLWLSSTTSYMAEIAAT--SGYDWLLIDGEHAP-NTIQDLYHQLQAIAPYASQPVIRPVEGSKPLI 83 (267)
T ss_pred hHHHHHHHcCCceEEEEecCCCcHHHHHHHH--cCCCEEEEccccCC-CCHHHHHHHHHHHHhcCCCeEEECCCCCHHHH
Confidence 34666776543322 233344566677776 67999999997666 55555544443 4555555566778888
Q ss_pred HHHHHHHHhhhhccccccCCccEEEeCCCC-HHHHHHHHH
Q 008254 104 MKCIAIMVMNQLFDNNFQLGAVEFLRKPLS-EDKLRNLWQ 142 (572)
Q Consensus 104 ~kai~~~~~~~~~~~~~~~GA~dYL~KPvs-~eeL~~~~q 142 (572)
.+++. .||.+.++-=++ .++...+++
T Consensus 84 ~r~LD-------------~GA~GIivP~V~saeeA~~~V~ 110 (267)
T PRK10128 84 KQVLD-------------IGAQTLLIPMVDTAEQARQVVS 110 (267)
T ss_pred HHHhC-------------CCCCeeEecCcCCHHHHHHHHH
Confidence 88888 999999997664 455555443
No 153
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=64.00 E-value=66 Score=30.94 Aligned_cols=74 Identities=12% Similarity=0.236 Sum_probs=54.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCEEEEEC-------CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAM--DYIVSTFY-------NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~--gy~V~ta~-------~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I 86 (572)
.+.+|.++...+...+.+...|++. +..|+-+. ..++.++.++. ..+|+|++-+.+|. .-.++...
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~--~~pdiv~vglG~Pk---QE~~~~~~ 121 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINA--SGPDIVFVGLGAPK---QERWIARH 121 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHH--cCCCEEEEECCCCH---HHHHHHHH
Confidence 3579999999999999999999876 55665333 34566677887 78999999999987 33566665
Q ss_pred c---CCcEEEE
Q 008254 87 K---DLPTIIT 94 (572)
Q Consensus 87 r---dlPVIiL 94 (572)
+ ..+|++.
T Consensus 122 ~~~l~~~v~i~ 132 (172)
T PF03808_consen 122 RQRLPAGVIIG 132 (172)
T ss_pred HHHCCCCEEEE
Confidence 5 4454433
No 154
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=64.00 E-value=82 Score=31.13 Aligned_cols=66 Identities=11% Similarity=0.277 Sum_probs=48.5
Q ss_pred CHHHHHHHhhcCCCCee-EEEEeCCCCCCCCh--HHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccC
Q 008254 49 NENEALSAFSDKPENFH-VAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQL 122 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~pD-LVIvDv~mPd~mdG--~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~ 122 (572)
+..+.++.+.+ ..++ +++.|+.--+++.| +++++.++ ++|||+-.+..+.+.+.+++. .
T Consensus 146 ~~~~~~~~~~~--~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~-------------~ 210 (230)
T TIGR00007 146 SLEELAKRLEE--LGLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKK-------------L 210 (230)
T ss_pred CHHHHHHHHHh--CCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-------------C
Confidence 44566666766 5666 77788865442333 56777775 789998888899999988887 9
Q ss_pred CccEEEe
Q 008254 123 GAVEFLR 129 (572)
Q Consensus 123 GA~dYL~ 129 (572)
||+++++
T Consensus 211 Gadgv~i 217 (230)
T TIGR00007 211 GVYGVIV 217 (230)
T ss_pred CCCEEEE
Confidence 9999876
No 155
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=63.40 E-value=39 Score=34.61 Aligned_cols=102 Identities=11% Similarity=0.112 Sum_probs=66.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIIT 94 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiL 94 (572)
.+++|+.+.+.. +.++. ...-.|. -.-+.++..+.+.. .|++|+=.. . .-|+.+++.+. .+|||..
T Consensus 222 ~~l~ivG~g~~~-~~l~~---~~~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~--e-~~g~~~~Eama~G~Pvi~~ 290 (351)
T cd03804 222 KRLVVIGDGPEL-DRLRA---KAGPNVTFLGRVSDEELRDLYAR----ARAFLFPAE--E-DFGIVPVEAMASGTPVIAY 290 (351)
T ss_pred CcEEEEECChhH-HHHHh---hcCCCEEEecCCCHHHHHHHHHh----CCEEEECCc--C-CCCchHHHHHHcCCCEEEe
Confidence 678888887643 33333 1222333 34466677777766 577776544 3 35777788876 8999876
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
...+. .+.+. .|-.+++..|-+.++|.+++..++..
T Consensus 291 ~~~~~----~e~i~-------------~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 291 GKGGA----LETVI-------------DGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred CCCCC----cceee-------------CCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 44322 12233 67789999999999999988777653
No 156
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=62.87 E-value=99 Score=30.46 Aligned_cols=82 Identities=21% Similarity=0.215 Sum_probs=53.1
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCC-C-----CChHHHHHHhc---CCcEEEEeCCCChHH
Q 008254 33 LKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN-T-----DGSFKFLETAK---DLPTIITSNIHCLST 102 (572)
Q Consensus 33 L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd-~-----mdG~~lLe~Ir---dlPVIiLS~~~d~~~ 102 (572)
+...++..+..+. .+.+.+++..+.. ...|.|+++-.-.+ . ...++++++++ ++||++.-+....+.
T Consensus 94 ~~~~~~~~~i~~i~~v~~~~~~~~~~~---~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~ 170 (236)
T cd04730 94 VVERLKAAGIKVIPTVTSVEEARKAEA---AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRG 170 (236)
T ss_pred HHHHHHHcCCEEEEeCCCHHHHHHHHH---cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHH
Confidence 3334444444443 4456666555444 35788887643211 0 13466787775 799999888888788
Q ss_pred HHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 103 MMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 103 ~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
+.+++. .||++.++-
T Consensus 171 v~~~l~-------------~GadgV~vg 185 (236)
T cd04730 171 IAAALA-------------LGADGVQMG 185 (236)
T ss_pred HHHHHH-------------cCCcEEEEc
Confidence 999998 999998874
No 157
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=62.68 E-value=63 Score=36.25 Aligned_cols=107 Identities=12% Similarity=0.144 Sum_probs=62.7
Q ss_pred CccEEEEEeCCHHHHH---HHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC--CCCCCCChHHHHHHhc---
Q 008254 16 KGLRVLLLDQDSSAAA---ELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV--TTSNTDGSFKFLETAK--- 87 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~---~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv--~mPd~mdG~~lLe~Ir--- 87 (572)
.+.+|+|++-|..-.. .|....+..|..+..+.+..++.+.+.. ..+|+||+|. .++...+.++-+..+.
T Consensus 251 ~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~--~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~ 328 (432)
T PRK12724 251 MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR--DGSELILIDTAGYSHRNLEQLERMQSFYSCF 328 (432)
T ss_pred cCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh--CCCCEEEEeCCCCCccCHHHHHHHHHHHHhh
Confidence 4568999998873322 2333334456666666667778888876 6899999996 2221011222222221
Q ss_pred -----CCcEEEEeCCCChHHHHHHHHHHHhhhhcccccc-CCccEEEeCCCCH
Q 008254 88 -----DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQ-LGAVEFLRKPLSE 134 (572)
Q Consensus 88 -----dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~-~GA~dYL~KPvs~ 134 (572)
.-.++++++......+..++. .|+ .|.++.|+-=++.
T Consensus 329 ~~~~~~e~~LVLsAt~~~~~~~~~~~----------~f~~~~~~glIlTKLDE 371 (432)
T PRK12724 329 GEKDSVENLLVLSSTSSYHHTLTVLK----------AYESLNYRRILLTKLDE 371 (432)
T ss_pred cCCCCCeEEEEEeCCCCHHHHHHHHH----------HhcCCCCCEEEEEcccC
Confidence 134677788777766666655 222 6777776654443
No 158
>PLN03162 golden-2 like transcription factor; Provisional
Probab=62.43 E-value=19 Score=39.47 Aligned_cols=99 Identities=14% Similarity=0.240 Sum_probs=55.0
Q ss_pred cccccCCC-----CCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCC----CCCC
Q 008254 444 AVQMWAPP-----GYPPWQQA-----ESWNWKPYPGMPADAWGCPVMPL---PNGPYSSFPQGASGYHNSGV----DDNS 506 (572)
Q Consensus 444 ~~~~w~~~-----~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~ 506 (572)
.+|+|+.| ..+.|+-+ .+|.-- ...-|-.|.+.- ..|||.+ +++..|..+.. .-+.
T Consensus 358 PLhVWGhPtvd~s~v~mWp~h~~~~p~pW~~~-----Dp~fW~h~~~~~~a~~gtpc~p--~pm~Rfp~ppv~~G~p~~~ 430 (526)
T PLN03162 358 PLKVWGYPTVDHSNVHMWQQPAVATPSYWQAA-----DGSYWQHPATGYDAFSARACYP--HPMQRVPLGTTHAGLPIMA 430 (526)
T ss_pred cceeccCCCCCCcccccccccccCCCCCCCCC-----CcchhhcccccCccccCCcccC--chhhhCCCCCCCCCCcccc
Confidence 67999954 45678543 244421 111244444331 1567754 44456644333 1122
Q ss_pred CCCCCCc---------ccCCCchHHHHHHHHHHhhCCCccCCCCCCCCchhHH
Q 008254 507 YAMPQNS---------VDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSV 550 (572)
Q Consensus 507 ~~~~~~~---------~~~~p~~e~~d~~i~~~~~~pwlplplglkpps~~~v 550 (572)
.++|..+ ...++-+.+.|.-||..+--+=..+||-.-| |-++|
T Consensus 431 P~~p~~~~yy~~d~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hp-SkEsi 482 (526)
T PLN03162 431 PGFPDESCYYGDDMLAASMYLCNQSYDSEIGRAAGVAACSKPIETHL-SKEVL 482 (526)
T ss_pred CCCCchhhcccccchhhcccccccccccccccccchhhcccccccCc-cHHHH
Confidence 2333321 2234667889999999998888888888765 44444
No 159
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=61.50 E-value=1.3e+02 Score=30.19 Aligned_cols=107 Identities=13% Similarity=0.240 Sum_probs=65.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEE--CCHHHHHHHhhcCCCCeeEEEEeCCCC-----CCCChHHHHHHhc
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTF--YNENEALSAFSDKPENFHVAIVEVTTS-----NTDGSFKFLETAK 87 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta--~~a~EAL~~L~e~~~~pDLVIvDv~mP-----d~mdG~~lLe~Ir 87 (572)
.++++++.+... ...+...++..+. .|... -+.++..+.+.. .|++|+=..-+ . .-|..+++.+.
T Consensus 210 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adi~l~~s~~~~~~~~e-~~~~~~~Ea~a 283 (355)
T cd03799 210 DFRLDIVGDGPL-RDELEALIAELGLEDRVTLLGAKSQEEVRELLRA----ADLFVLPSVTAADGDRE-GLPVVLMEAMA 283 (355)
T ss_pred CeEEEEEECCcc-HHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHh----CCEEEecceecCCCCcc-CccHHHHHHHH
Confidence 456666665433 3445555555432 33332 234666677665 46766533321 2 24678888876
Q ss_pred -CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 88 -DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 88 -dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
.+|||. |...... +.+. .|..+++..+-+.++|.+.+..++.
T Consensus 284 ~G~Pvi~-~~~~~~~---~~i~-------------~~~~g~~~~~~~~~~l~~~i~~~~~ 326 (355)
T cd03799 284 MGLPVIS-TDVSGIP---ELVE-------------DGETGLLVPPGDPEALADAIERLLD 326 (355)
T ss_pred cCCCEEe-cCCCCcc---hhhh-------------CCCceEEeCCCCHHHHHHHHHHHHh
Confidence 899885 3333322 2334 6778999999999999998887765
No 160
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=61.50 E-value=1.6e+02 Score=31.82 Aligned_cols=106 Identities=10% Similarity=0.204 Sum_probs=67.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-EEEEE---CCHHHHHHHhhcCCCCeeEEEEeCCCC--CCCChHHHHHHhc-CC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY-IVSTF---YNENEALSAFSDKPENFHVAIVEVTTS--NTDGSFKFLETAK-DL 89 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy-~V~ta---~~a~EAL~~L~e~~~~pDLVIvDv~mP--d~mdG~~lLe~Ir-dl 89 (572)
.++.+|+.|-+ .++.|+.+++..+. +++.+ -..++....+.. .|+.++ .... +..-+..+++.+. .+
T Consensus 269 ~i~l~ivG~G~-~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~----aDv~v~-~~~~~~~~~~p~~~~Eama~G~ 342 (415)
T cd03816 269 KLLCIITGKGP-LKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLAS----ADLGVS-LHTSSSGLDLPMKVVDMFGCGL 342 (415)
T ss_pred CEEEEEEecCc-cHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHh----CCEEEE-ccccccccCCcHHHHHHHHcCC
Confidence 37888888765 46778888887765 34443 245666666666 577664 1111 1012566788775 89
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
|||... .+... +.+. .|-++++.. +.++|.+++..++..
T Consensus 343 PVI~s~-~~~~~---eiv~-------------~~~~G~lv~--d~~~la~~i~~ll~~ 381 (415)
T cd03816 343 PVCALD-FKCID---ELVK-------------HGENGLVFG--DSEELAEQLIDLLSN 381 (415)
T ss_pred CEEEeC-CCCHH---HHhc-------------CCCCEEEEC--CHHHHHHHHHHHHhc
Confidence 998744 33333 3344 788889883 889999988877664
No 161
>PRK10742 putative methyltransferase; Provisional
Probab=61.37 E-value=40 Score=35.13 Aligned_cols=56 Identities=20% Similarity=0.162 Sum_probs=43.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC------CC----EEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAM------DY----IVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~------gy----~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd 75 (572)
|.+|..||.++.+...|+.-|+.. +- ++. ...+..+.|..+. ..||+|.+|=.-|.
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~---~~fDVVYlDPMfp~ 176 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT---PRPQVVYLDPMFPH 176 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC---CCCcEEEECCCCCC
Confidence 668999999999999999999874 21 233 4567777776543 46999999998887
No 162
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=61.29 E-value=78 Score=32.75 Aligned_cols=97 Identities=9% Similarity=0.114 Sum_probs=62.2
Q ss_pred HHHHHHHHHhCCCEE--EEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-----CCcEEEEeCCCChHH
Q 008254 30 AAELKFKLEAMDYIV--STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTIITSNIHCLST 102 (572)
Q Consensus 30 ~~~L~~lL~~~gy~V--~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-----dlPVIiLS~~~d~~~ 102 (572)
...|+..|..-...+ ........+.+.+.. ..||.|++|+.-.. .+--++...++ .+..|+=....+...
T Consensus 7 ~n~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~--~G~D~v~iD~EHg~-~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~ 83 (256)
T PRK10558 7 PNKFKAALAAKQVQIGCWSALANPITTEVLGL--AGFDWLVLDGEHAP-NDVSTFIPQLMALKGSASAPVVRVPTNEPVI 83 (256)
T ss_pred CHHHHHHHHcCCceEEEEEcCCCcHHHHHHHh--cCCCEEEEccccCC-CCHHHHHHHHHHHhhcCCCcEEECCCCCHHH
Confidence 344677776643323 233344567777777 67999999997666 55555544443 455555445567788
Q ss_pred HHHHHHHHHhhhhccccccCCccEEEeCCC-CHHHHHHHHH
Q 008254 103 MMKCIAIMVMNQLFDNNFQLGAVEFLRKPL-SEDKLRNLWQ 142 (572)
Q Consensus 103 ~~kai~~~~~~~~~~~~~~~GA~dYL~KPv-s~eeL~~~~q 142 (572)
+.+++. .||.+.++-=+ +.++...+++
T Consensus 84 i~r~LD-------------~Ga~giivP~v~tae~a~~~v~ 111 (256)
T PRK10558 84 IKRLLD-------------IGFYNFLIPFVETAEEARRAVA 111 (256)
T ss_pred HHHHhC-------------CCCCeeeecCcCCHHHHHHHHH
Confidence 888888 99999988655 4466665333
No 163
>PRK00654 glgA glycogen synthase; Provisional
Probab=60.91 E-value=1.3e+02 Score=33.16 Aligned_cols=113 Identities=12% Similarity=0.084 Sum_probs=64.6
Q ss_pred ccEEEEEeCC-HHHHHHHHHHHHhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEE
Q 008254 17 GLRVLLLDQD-SSAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTI 92 (572)
Q Consensus 17 ~lRVLVVDDD-~~~~~~L~~lL~~~gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVI 92 (572)
.++++|+.+. ....+.|+.+.++.+-.+. ...+.+.+-.++.. .|++++=-. -. .-|+-.++.+. .+|+|
T Consensus 311 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~----aDv~v~PS~-~E-~~gl~~lEAma~G~p~V 384 (466)
T PRK00654 311 GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAG----ADMFLMPSR-FE-PCGLTQLYALRYGTLPI 384 (466)
T ss_pred CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhh----CCEEEeCCC-CC-CchHHHHHHHHCCCCEE
Confidence 4677777764 3455667776666554333 22233333344444 578776432 23 35677788776 67777
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
+....+-.+++...- ....+..+|+..|-+.++|.+++..++.
T Consensus 385 ~~~~gG~~e~v~~~~-----------~~~~~~~G~lv~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 385 VRRTGGLADTVIDYN-----------PEDGEATGFVFDDFNAEDLLRALRRALE 427 (466)
T ss_pred EeCCCCccceeecCC-----------CCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 643322222111100 0012278999999999999998888765
No 164
>PRK15201 fimbriae regulatory protein FimW; Provisional
Probab=60.90 E-value=20 Score=35.99 Aligned_cols=152 Identities=13% Similarity=0.159 Sum_probs=84.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--C-EEEEECCHHHHHHHhhcCCCCeeEEEEeCC--CCCCCChHHHHHHhc-CCcE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMD--Y-IVSTFYNENEALSAFSDKPENFHVAIVEVT--TSNTDGSFKFLETAK-DLPT 91 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~g--y-~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~--mPd~mdG~~lLe~Ir-dlPV 91 (572)
+.|.|-+.+.-+--+|+-++.... + +-..|-.+++ + ++.|+.++.+. .-. .+-+++--.-+ ...|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 72 (198)
T PRK15201 2 LSIAIKEQNSHFEHGLKIIMTRLANQWQQKIDFLPPEE----I----DNADIAFLALDDDWFS-AGCYQIPMHTQHQLRV 72 (198)
T ss_pred cceeeccccchhhhhHHHHHHHHHHHHHHHhccCChhh----c----cccceeeeecchhhhh-CCceeccccccceeEE
Confidence 456777777777666666665431 1 1111211111 1 23466665432 111 01111111111 5677
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCCC-------cccCCCChhH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGS-------ALSDSLKPVK 164 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~~-------~~~~sLt~RE 164 (572)
|+...++....|.+-- +-..-||..--+.+++.-..--+++++.....- -....||+||
T Consensus 73 ~~~~~~~~~~~~~~~~--------------~~~~~~iyr~d~v~~i~~k~~~il~~~al~~~~~~~~~~~~~~~~LSpRE 138 (198)
T PRK15201 73 IICNKCDKEKLMFRPC--------------LYMLPHIYREDDVEEITRKMILILHKRALRHSVPSGICHYCTTRHFSVTE 138 (198)
T ss_pred EEeccccchhhhhchh--------------HhhcchhhccccHHHHHHHHHHHHHHHHHHhhCCchhccccCCCCCCHHH
Confidence 7776666555553322 223456666777777766655555443221111 1245699999
Q ss_pred HHHHHHHHhcchhhhhhccccccccccc
Q 008254 165 ESVVSMLHLKLENGESKNEKSENTEYVL 192 (572)
Q Consensus 165 ~eVL~ll~~~len~e~~~e~s~~~e~v~ 192 (572)
++|++++..|..+++...+...+..+|.
T Consensus 139 rEVLrLLAqGkTnKEIAe~L~IS~rTVk 166 (198)
T PRK15201 139 RHLLKLIASGYHLSETAALLSLSEEQTK 166 (198)
T ss_pred HHHHHHHHCCCCHHHHHHHhCCCHHHHH
Confidence 9999999999999999988877766654
No 165
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=60.79 E-value=1.3e+02 Score=35.09 Aligned_cols=102 Identities=15% Similarity=0.142 Sum_probs=66.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIi 93 (572)
.++++||.|.+ ..+.|+.+.+..+. .|.......+.-..+.. .|++++=-. .. .-|..+++.+. .+|||.
T Consensus 429 dirLvIVGdG~-~~eeLk~la~elgL~d~V~FlG~~~Dv~~~Laa----ADVfVlPS~-~E-Gfp~vlLEAMA~GlPVVA 501 (578)
T PRK15490 429 ATRFVLVGDGD-LRAEAQKRAEQLGILERILFVGASRDVGYWLQK----MNVFILFSR-YE-GLPNVLIEAQMVGVPVIS 501 (578)
T ss_pred CeEEEEEeCch-hHHHHHHHHHHcCCCCcEEECCChhhHHHHHHh----CCEEEEccc-cc-CccHHHHHHHHhCCCEEE
Confidence 46788888764 45667777776654 45555554555555554 688876322 23 35778888886 899995
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQ 142 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q 142 (572)
....+. .+.+. .|.++|++.+-+.+.|.+.+.
T Consensus 502 TdvGG~----~EiV~-------------dG~nG~LVp~~D~~aLa~ai~ 533 (578)
T PRK15490 502 TPAGGS----AECFI-------------EGVSGFILDDAQTVNLDQACR 533 (578)
T ss_pred eCCCCc----HHHcc-------------cCCcEEEECCCChhhHHHHHH
Confidence 544332 23344 799999999998877776553
No 166
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=60.16 E-value=1.4e+02 Score=28.92 Aligned_cols=63 Identities=13% Similarity=0.044 Sum_probs=41.1
Q ss_pred eeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHH
Q 008254 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQ 142 (572)
Q Consensus 64 pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q 142 (572)
.|++|+-... + .-|..+++.+. .+|||.. ..+.. .+.+. .|..+|+..+-+.+.+...++
T Consensus 264 ~d~~i~ps~~-e-~~~~~~~Ea~~~G~PvI~~-~~~~~---~e~i~-------------~~~~g~~~~~~~~~~~~~~~~ 324 (353)
T cd03811 264 ADLFVLSSRY-E-GFPNVLLEAMALGTPVVAT-DCPGP---REILE-------------DGENGLLVPVGDEAALAAAAL 324 (353)
T ss_pred CCEEEeCccc-C-CCCcHHHHHHHhCCCEEEc-CCCCh---HHHhc-------------CCCceEEECCCCHHHHHHHHH
Confidence 4666654333 2 24677888886 8998753 33332 33344 788999999999999876555
Q ss_pred HHH
Q 008254 143 HVV 145 (572)
Q Consensus 143 ~Vl 145 (572)
.+.
T Consensus 325 ~i~ 327 (353)
T cd03811 325 ALL 327 (353)
T ss_pred HHH
Confidence 443
No 167
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=59.39 E-value=83 Score=29.41 Aligned_cols=68 Identities=15% Similarity=0.076 Sum_probs=47.0
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEeCCCCC-------CCChHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhh
Q 008254 46 TFYNENEALSAFSDKPENFHVAIVEVTTSN-------TDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQL 115 (572)
Q Consensus 46 ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd-------~mdG~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~ 115 (572)
.+.+..++.+.+.. .+|+|++.-..|. ...+.+.++.++ ++||++..+.. .+.+.+++.
T Consensus 101 ~~~t~~~~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~-~~~i~~~~~------- 169 (196)
T cd00564 101 STHSLEEALRAEEL---GADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGIT-PENAAEVLA------- 169 (196)
T ss_pred eCCCHHHHHHHhhc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHH-------
Confidence 45677777776654 5899987643331 134567777774 79999887764 577888888
Q ss_pred ccccccCCccEEEeC
Q 008254 116 FDNNFQLGAVEFLRK 130 (572)
Q Consensus 116 ~~~~~~~GA~dYL~K 130 (572)
.|++++.+=
T Consensus 170 ------~Ga~~i~~g 178 (196)
T cd00564 170 ------AGADGVAVI 178 (196)
T ss_pred ------cCCCEEEEe
Confidence 899887653
No 168
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=59.32 E-value=1.3e+02 Score=33.42 Aligned_cols=109 Identities=16% Similarity=0.171 Sum_probs=61.6
Q ss_pred CccEEEEEeCCHHHH---HHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCC--CCCCChHHHHHHh-c--
Q 008254 16 KGLRVLLLDQDSSAA---AELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTT--SNTDGSFKFLETA-K-- 87 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~---~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~m--Pd~mdG~~lLe~I-r-- 87 (572)
.+.+|++|+-|+.-. +.|...-+..+..+..+.+..+....+... ..+|+||+|.-- +.....++.+..+ .
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~ 328 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-RDCDVILIDTAGRSQRDKRLIEELKALIEFS 328 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-CCCCEEEEeCCCCCCCCHHHHHHHHHHHhcc
Confidence 357899999987432 234444444566666667777766666553 358999999731 1101122223322 2
Q ss_pred --C-CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCH
Q 008254 88 --D-LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSE 134 (572)
Q Consensus 88 --d-lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~ 134 (572)
. -.++++++......+.+.+. .|+ ..+++.+|.--++.
T Consensus 329 ~~~~~~~LVl~a~~~~~~l~~~~~------~f~---~~~~~~vI~TKlDe 369 (424)
T PRK05703 329 GEPIDVYLVLSATTKYEDLKDIYK------HFS---RLPLDGLIFTKLDE 369 (424)
T ss_pred CCCCeEEEEEECCCCHHHHHHHHH------HhC---CCCCCEEEEecccc
Confidence 1 22677888777666666555 111 25666666554443
No 169
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=58.94 E-value=1.2e+02 Score=30.48 Aligned_cols=106 Identities=16% Similarity=0.180 Sum_probs=63.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIi 93 (572)
.++++|+.+-+. ...++..++..+. .|......++..+.+.. .|++|+-... . .-|..++|.+. .+|||+
T Consensus 223 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~ps~~-E-~~~~~~lEAma~G~PvI~ 295 (358)
T cd03812 223 NAKLLLVGDGEL-EEEIKKKVKELGLEDKVIFLGVRNDVPELLQA----MDVFLFPSLY-E-GLPLVLIEAQASGLPCIL 295 (358)
T ss_pred CeEEEEEeCCch-HHHHHHHHHhcCCCCcEEEecccCCHHHHHHh----cCEEEecccc-c-CCCHHHHHHHHhCCCEEE
Confidence 467778776543 3455555555432 34433333444455544 5777754333 2 35788888886 899986
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
....+ .. ..+. . ...|+..+-+.+++.+++..++..
T Consensus 296 s~~~~-~~---~~i~-------------~-~~~~~~~~~~~~~~a~~i~~l~~~ 331 (358)
T cd03812 296 SDTIT-KE---VDLT-------------D-LVKFLSLDESPEIWAEEILKLKSE 331 (358)
T ss_pred EcCCc-hh---hhhc-------------c-CccEEeCCCCHHHHHHHHHHHHhC
Confidence 54433 22 2222 3 456888777889999988888764
No 170
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=58.78 E-value=46 Score=32.84 Aligned_cols=66 Identities=12% Similarity=0.248 Sum_probs=49.2
Q ss_pred CHHHHHHHhhcCCCCee-EEEEeCCCCCCCCh--HHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccC
Q 008254 49 NENEALSAFSDKPENFH-VAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQL 122 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~pD-LVIvDv~mPd~mdG--~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~ 122 (572)
+..+..+.+.+ ..++ +++.|+..-++..| ++++++++ .+|||.-.+..+.+.+.++++ .
T Consensus 147 ~~~e~~~~~~~--~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~-------------~ 211 (233)
T PRK00748 147 TAEDLAKRFED--AGVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKG-------------L 211 (233)
T ss_pred CHHHHHHHHHh--cCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-------------c
Confidence 34667777776 5566 78888765443345 67788876 689999888899999988888 7
Q ss_pred C-ccEEEe
Q 008254 123 G-AVEFLR 129 (572)
Q Consensus 123 G-A~dYL~ 129 (572)
| |++.++
T Consensus 212 g~~~gv~v 219 (233)
T PRK00748 212 GAVEGVIV 219 (233)
T ss_pred CCccEEEE
Confidence 7 888876
No 171
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=58.73 E-value=33 Score=31.86 Aligned_cols=54 Identities=26% Similarity=0.285 Sum_probs=42.0
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 13 ~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
++ ++.+|.++.... ....|...+.. +..+..+.+..+++++|.. +++|++|.|.
T Consensus 107 dl-~~~~i~~~~g~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~--g~~d~~i~~~ 160 (225)
T PF00497_consen 107 DL-KGKRIGVVRGSS-YADYLKQQYPS-NINIVEVDSPEEALEALLS--GRIDAFIVDE 160 (225)
T ss_dssp GG-TTSEEEEETTSH-HHHHHHHHTHH-TSEEEEESSHHHHHHHHHT--TSSSEEEEEH
T ss_pred hh-cCcccccccchh-HHHHhhhhccc-hhhhcccccHHHHHHHHhc--CCeeeeeccc
Confidence 55 557899888854 44455555543 6788889999999999999 8999999875
No 172
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=58.70 E-value=42 Score=29.40 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=44.4
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc
Q 008254 24 DQDSSAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (572)
Q Consensus 24 DDD~~~~~~L~~lL~~~gy~V~ta---~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir 87 (572)
|....-...+..+|+..||++... ...++.++.+.+ ..||+|.+-..+......++.+..++
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~--~~pdiV~iS~~~~~~~~~~~~~~~~~ 74 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKE--EDADVVGLSALSTTHMEAMKLVIEAL 74 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHH--cCCCEEEEecchHhHHHHHHHHHHHH
Confidence 556667778889999999988844 366777888888 78999999887765122344444443
No 173
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=58.39 E-value=1.1e+02 Score=31.64 Aligned_cols=93 Identities=9% Similarity=0.121 Sum_probs=60.5
Q ss_pred HHHHHHhCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-----CCcEEEEeCCCChHHHHH
Q 008254 33 LKFKLEAMDYI--VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTIITSNIHCLSTMMK 105 (572)
Q Consensus 33 L~~lL~~~gy~--V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-----dlPVIiLS~~~d~~~~~k 105 (572)
|+..|+.-... +........+.+++.. ..||.|++|+.-.. ++--++...++ .+..|+=....+...+.+
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~--~G~D~v~iD~EHg~-~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r 79 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGL--AGFDWLLLDGEHAP-NDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKR 79 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHh--cCCCEEEEecccCC-CCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHH
Confidence 45566554332 2233444567777777 67999999997766 55555544443 455555456677888888
Q ss_pred HHHHHHhhhhccccccCCccEEEeCCC-CHHHHHHHH
Q 008254 106 CIAIMVMNQLFDNNFQLGAVEFLRKPL-SEDKLRNLW 141 (572)
Q Consensus 106 ai~~~~~~~~~~~~~~~GA~dYL~KPv-s~eeL~~~~ 141 (572)
++. .||.+.++-=+ +.++...++
T Consensus 80 ~LD-------------~Ga~gIivP~v~taeea~~~v 103 (249)
T TIGR03239 80 LLD-------------IGFYNFLIPFVESAEEAERAV 103 (249)
T ss_pred Hhc-------------CCCCEEEecCcCCHHHHHHHH
Confidence 888 99999988655 446666533
No 174
>PLN02775 Probable dihydrodipicolinate reductase
Probab=58.32 E-value=71 Score=33.94 Aligned_cols=83 Identities=10% Similarity=0.065 Sum_probs=54.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEE----------------------E--CCHHHHHHHhhcCCCCeeEEEEeCC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVST----------------------F--YNENEALSAFSDKPENFHVAIVEVT 72 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~t----------------------a--~~a~EAL~~L~e~~~~pDLVIvDv~ 72 (572)
.++|+|..---..-..+...+.+.+++++- + ++.+++|..+.. ..+|+|++|+.
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~--~~~~~VvIDFT 88 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKA--EYPNLIVVDYT 88 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhc--cCCCEEEEECC
Confidence 368888887777766666666555555442 2 556666766555 46899999999
Q ss_pred CCCCCChHHHHHHhc--CCcEEEEeCCCChHHH
Q 008254 73 TSNTDGSFKFLETAK--DLPTIITSNIHCLSTM 103 (572)
Q Consensus 73 mPd~mdG~~lLe~Ir--dlPVIiLS~~~d~~~~ 103 (572)
.|+ ...+.++... .+|+|+=|.--+.+.+
T Consensus 89 ~P~--a~~~~~~~~~~~g~~~VvGTTG~~~e~l 119 (286)
T PLN02775 89 LPD--AVNDNAELYCKNGLPFVMGTTGGDRDRL 119 (286)
T ss_pred ChH--HHHHHHHHHHHCCCCEEEECCCCCHHHH
Confidence 998 4666666553 6777665444444433
No 175
>PRK00811 spermidine synthase; Provisional
Probab=57.94 E-value=1.7e+02 Score=30.51 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=42.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC------CCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCC
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAM------DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~------gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd 75 (572)
+...+|.+||=|+.+.+..+..|... +-+|. ...++.+.+.. .. ..||+||+|..-|.
T Consensus 98 ~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~--~~yDvIi~D~~dp~ 162 (283)
T PRK00811 98 PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TE--NSFDVIIVDSTDPV 162 (283)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-CC--CcccEEEECCCCCC
Confidence 33458999999999999999988643 12343 56777776654 23 68999999986554
No 176
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=57.89 E-value=1.2e+02 Score=33.13 Aligned_cols=112 Identities=12% Similarity=0.084 Sum_probs=62.2
Q ss_pred cEEEEEeCC-HHHHHHHHHHHHhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEE
Q 008254 18 LRVLLLDQD-SSAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (572)
Q Consensus 18 lRVLVVDDD-~~~~~~L~~lL~~~gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIi 93 (572)
++++|+.+- +...+.++.+.++.+-.+. ..-+.+++...+.. .|++|+=-.- . .-|+..++.+. .+|+|+
T Consensus 321 ~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~----aDv~l~pS~~-E-~~gl~~lEAma~G~pvI~ 394 (473)
T TIGR02095 321 GQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAG----ADFILMPSRF-E-PCGLTQLYAMRYGTVPIV 394 (473)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHh----CCEEEeCCCc-C-CcHHHHHHHHHCCCCeEE
Confidence 677777665 3445556665555443333 22234444445444 5777753222 2 24666777766 678775
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
. ..+.... .+. + +.....+..+|+..|.+.++|.+++..++.
T Consensus 395 s-~~gg~~e---~v~-----~--~~~~~~~~~G~l~~~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 395 R-RTGGLAD---TVV-----D--GDPEAESGTGFLFEEYDPGALLAALSRALR 436 (473)
T ss_pred c-cCCCccc---eEe-----c--CCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 3 3332221 111 0 000002278999999999999999888776
No 177
>PRK13566 anthranilate synthase; Provisional
Probab=57.74 E-value=28 Score=41.32 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=52.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC--CCCCCCChHHHHHHhc--CCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV--TTSNTDGSFKFLETAK--DLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv--~mPd~mdG~~lLe~Ir--dlPV 91 (572)
++++|||||........|.+.|++.|++|.++..... .+.+.. ..+|.||+-= ..|...+-.++++.+. ++||
T Consensus 525 ~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~--~~~DgVVLsgGpgsp~d~~~~~lI~~a~~~~iPI 601 (720)
T PRK13566 525 EGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDR--VNPDLVVLSPGPGRPSDFDCKATIDAALARNLPI 601 (720)
T ss_pred CCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhh--cCCCEEEECCCCCChhhCCcHHHHHHHHHCCCcE
Confidence 5789999999998999999999999999886665421 223333 4688877621 1121012345566553 7998
Q ss_pred EEEeC
Q 008254 92 IITSN 96 (572)
Q Consensus 92 IiLS~ 96 (572)
+-+.-
T Consensus 602 LGICl 606 (720)
T PRK13566 602 FGVCL 606 (720)
T ss_pred EEEeh
Confidence 87643
No 178
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=57.59 E-value=1.8e+02 Score=30.18 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=38.7
Q ss_pred eeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeCC----CChHHHHHHHHHHHhhhhccccccCCccEEEeCCCC--HHH
Q 008254 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNI----HCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLS--EDK 136 (572)
Q Consensus 64 pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~~----~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs--~ee 136 (572)
.|++|+ . ..+..+++.+. .+|+|++... ++.....+.+. +.|+ ++++.+-+ .+.
T Consensus 253 ~d~~i~-----~-~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~------------~~~~-g~~~~~~~~~~~~ 313 (357)
T PRK00726 253 ADLVIC-----R-AGASTVAELAAAGLPAILVPLPHAADDHQTANARALV------------DAGA-ALLIPQSDLTPEK 313 (357)
T ss_pred CCEEEE-----C-CCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHH------------HCCC-EEEEEcccCCHHH
Confidence 466665 1 12456667665 8999987542 22222233333 1454 77776655 899
Q ss_pred HHHHHHHHHH
Q 008254 137 LRNLWQHVVH 146 (572)
Q Consensus 137 L~~~~q~Vlr 146 (572)
|.+++..++.
T Consensus 314 l~~~i~~ll~ 323 (357)
T PRK00726 314 LAEKLLELLS 323 (357)
T ss_pred HHHHHHHHHc
Confidence 9998888775
No 179
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=57.34 E-value=1.4e+02 Score=29.03 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=42.0
Q ss_pred eeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHH
Q 008254 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQ 142 (572)
Q Consensus 64 pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q 142 (572)
.|++|+=... . .-|..+++.+. .+|||+. ...... +.+. .|..+++..+-+.+++.+++.
T Consensus 264 adi~i~ps~~-e-~~~~~~~Ea~~~G~Pvi~s-~~~~~~---~~i~-------------~~~~g~~~~~~~~~~~~~~i~ 324 (359)
T cd03808 264 ADVFVLPSYR-E-GLPRVLLEAMAMGRPVIAT-DVPGCR---EAVI-------------DGVNGFLVPPGDAEALADAIE 324 (359)
T ss_pred ccEEEecCcc-c-CcchHHHHHHHcCCCEEEe-cCCCch---hhhh-------------cCcceEEECCCCHHHHHHHHH
Confidence 4566543322 2 24677888876 8998864 333322 2333 577889999999999999888
Q ss_pred HHHH
Q 008254 143 HVVH 146 (572)
Q Consensus 143 ~Vlr 146 (572)
.++.
T Consensus 325 ~l~~ 328 (359)
T cd03808 325 RLIE 328 (359)
T ss_pred HHHh
Confidence 7654
No 180
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.24 E-value=1.2e+02 Score=32.41 Aligned_cols=104 Identities=24% Similarity=0.344 Sum_probs=61.1
Q ss_pred CCCccEEEEEeC--C---HHHHHHHHHHHHhCCCEEEEECCHHHHHHH----h------------hcCCCCeeEEEEeCC
Q 008254 14 FPKGLRVLLLDQ--D---SSAAAELKFKLEAMDYIVSTFYNENEALSA----F------------SDKPENFHVAIVEVT 72 (572)
Q Consensus 14 ~p~~lRVLVVDD--D---~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~----L------------~e~~~~pDLVIvDv~ 72 (572)
|....+|+|+-. . ......|...|...|++|.........+.. + ......+|+||+
T Consensus 2 ~~~~~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~--- 78 (306)
T PRK03372 2 MTASRRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV--- 78 (306)
T ss_pred CCCccEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE---
Confidence 344456888843 2 234566777777888888866543332210 0 010023577775
Q ss_pred CCCCCCh--HHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 73 TSNTDGS--FKFLETAK--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 73 mPd~mdG--~~lLe~Ir--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
+- .|| +..++.+. ++||+-+. .|=.+||. .++.+++.++++.+++..
T Consensus 79 lG--GDGT~L~aar~~~~~~~PilGIN--------------------------~G~lGFL~-~~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 79 LG--GDGTILRAAELARAADVPVLGVN--------------------------LGHVGFLA-EAEAEDLDEAVERVVDRD 129 (306)
T ss_pred Ec--CCHHHHHHHHHhccCCCcEEEEe--------------------------cCCCceec-cCCHHHHHHHHHHHHcCC
Confidence 22 355 34444432 67776442 57778888 478899999888888764
Q ss_pred H
Q 008254 149 F 149 (572)
Q Consensus 149 ~ 149 (572)
.
T Consensus 130 y 130 (306)
T PRK03372 130 Y 130 (306)
T ss_pred c
Confidence 3
No 181
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=57.08 E-value=1.5e+02 Score=28.87 Aligned_cols=76 Identities=16% Similarity=0.229 Sum_probs=49.3
Q ss_pred CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEE
Q 008254 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEF 127 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dY 127 (572)
+.++..+.+.. .|++|+-... + .-|..+++.+. .+|||.. ..+... +.+. .+..++
T Consensus 268 ~~~~~~~~~~~----ad~~i~~~~~-~-~~~~~~~Ea~~~G~pvI~~-~~~~~~---~~~~-------------~~~~g~ 324 (377)
T cd03798 268 PHEEVPAYYAA----ADVFVLPSLR-E-GFGLVLLEAMACGLPVVAT-DVGGIP---EIIT-------------DGENGL 324 (377)
T ss_pred CHHHHHHHHHh----cCeeecchhh-c-cCChHHHHHHhcCCCEEEe-cCCChH---HHhc-------------CCccee
Confidence 33445555554 4666643322 3 35677888876 8998754 333322 3334 677789
Q ss_pred EeCCCCHHHHHHHHHHHHHH
Q 008254 128 LRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 128 L~KPvs~eeL~~~~q~Vlrr 147 (572)
+.++-+.++|.+++..++..
T Consensus 325 ~~~~~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 325 LVPPGDPEALAEAILRLLAD 344 (377)
T ss_pred EECCCCHHHHHHHHHHHhcC
Confidence 99999999999988888764
No 182
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=56.81 E-value=14 Score=35.75 Aligned_cols=31 Identities=10% Similarity=0.151 Sum_probs=27.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFY 48 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~ 48 (572)
+||||||....+--.|...|+..|+++.++.
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 6999999999999999999999998777655
No 183
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=56.58 E-value=2.2e+02 Score=28.50 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=67.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEeCCC-CCCCChHHHHHHhc-CCc
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTT-SNTDGSFKFLETAK-DLP 90 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~m-Pd~mdG~~lLe~Ir-dlP 90 (572)
.++++|+.+.+. ...+..+++..+. .|.... +.++..+.+.. .|++|+=... .. .-|..+++.+. .+|
T Consensus 218 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~----ad~~i~ps~~~~e-~~g~~~~Ea~~~g~P 291 (357)
T cd03795 218 DAPLVIVGEGPL-EAELEALAAALGLLDRVRFLGRLDDEEKAALLAA----CDVFVFPSVERSE-AFGIVLLEAMAFGKP 291 (357)
T ss_pred CcEEEEEeCChh-HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHh----CCEEEeCCccccc-ccchHHHHHHHcCCC
Confidence 577888877543 3456666654433 444333 44555666654 4676653211 23 34778888886 899
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
||..-.....+ .+. ..|..+++..+-+.+++.+++..++..
T Consensus 292 vi~~~~~~~~~----~i~------------~~~~~g~~~~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 292 VISTEIGTGGS----YVN------------LHGVTGLVVPPGDPAALAEAIRRLLED 332 (357)
T ss_pred EEecCCCCchh----HHh------------hCCCceEEeCCCCHHHHHHHHHHHHHC
Confidence 98643322222 222 037888999999999999999988763
No 184
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=56.47 E-value=85 Score=35.26 Aligned_cols=98 Identities=16% Similarity=0.212 Sum_probs=62.7
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhC-CCE--EEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCC-----------C
Q 008254 16 KGLRVLLLDQD----SSAAAELKFKLEAM-DYI--VSTFYNENEALSAFSDKPENFHVAIVEVTTSNT-----------D 77 (572)
Q Consensus 16 ~~lRVLVVDDD----~~~~~~L~~lL~~~-gy~--V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~-----------m 77 (572)
.+++++++|.. ..+...++.+-.+. +-. +-.+.+.++|..++.. .+|.|.+-+. |+. .
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a---Gad~i~vg~g-~gs~~~~r~~~~~g~ 314 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA---GADAVKVGIG-PGSICTTRIVAGVGV 314 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc---CCCEEEECCC-CCccccceeecCCCc
Confidence 36788888864 23444444444443 333 3477788999888876 5677765321 110 0
Q ss_pred ChHHHHHHh----c--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 78 GSFKFLETA----K--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 78 dG~~lLe~I----r--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
.-+.++..+ + ++|||.=-+......+.+|+. +||+..++=
T Consensus 315 p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla-------------~GA~~v~~G 360 (486)
T PRK05567 315 PQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALA-------------AGASAVMLG 360 (486)
T ss_pred CHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHH-------------hCCCEEEEC
Confidence 113344332 2 588888888899999999999 999988774
No 185
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=56.29 E-value=1e+02 Score=34.72 Aligned_cols=109 Identities=15% Similarity=0.141 Sum_probs=58.4
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHhhcCC--CCeeEEEEeCCCCCCCChHHHHHHhc---
Q 008254 16 KGLRVLLLDQDSSA---AAELKFKLEAMDYIVSTFYNENEALSAFSDKP--ENFHVAIVEVTTSNTDGSFKFLETAK--- 87 (572)
Q Consensus 16 ~~lRVLVVDDD~~~---~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~--~~pDLVIvDv~mPd~mdG~~lLe~Ir--- 87 (572)
.+.+|++++-|..- .+.|+..-+..|..+..+.+..+..+.+...+ ..+|+||+|.-=-. ..-...++++.
T Consensus 268 ~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs-~kd~~lm~EL~~~l 346 (436)
T PRK11889 268 KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKN-YRASETVEEMIETM 346 (436)
T ss_pred cCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCcccc-CcCHHHHHHHHHHH
Confidence 45689999988653 33344444456777776676666555543211 25899999973211 11123333331
Q ss_pred -----CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCH
Q 008254 88 -----DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSE 134 (572)
Q Consensus 88 -----dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~ 134 (572)
+-.++++++......+...+. .|+. .|.+++|.-=++.
T Consensus 347 k~~~PdevlLVLsATtk~~d~~~i~~------~F~~---~~idglI~TKLDE 389 (436)
T PRK11889 347 GQVEPDYICLTLSASMKSKDMIEIIT------NFKD---IHIDGIVFTKFDE 389 (436)
T ss_pred hhcCCCeEEEEECCccChHHHHHHHH------HhcC---CCCCEEEEEcccC
Confidence 223455666544444444443 1221 6777777654443
No 186
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.68 E-value=69 Score=33.50 Aligned_cols=96 Identities=14% Similarity=0.179 Sum_probs=57.0
Q ss_pred cEEEEEeC-----CHHHHHHHHHHHHhCCCEEEEECCHHHHHH--------HhhcCCCCeeEEEEeCCCCCCCCh--HHH
Q 008254 18 LRVLLLDQ-----DSSAAAELKFKLEAMDYIVSTFYNENEALS--------AFSDKPENFHVAIVEVTTSNTDGS--FKF 82 (572)
Q Consensus 18 lRVLVVDD-----D~~~~~~L~~lL~~~gy~V~ta~~a~EAL~--------~L~e~~~~pDLVIvDv~mPd~mdG--~~l 82 (572)
|||.|+-. .......+...|+..|+++.......+.+. .+.. ..+|+||+ + + .|| +..
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~--~~~d~vi~---i-G-GDGTlL~a 73 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEE--MDVDFIIA---I-G-GDGTILRI 73 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccc--cCCCEEEE---E-e-CcHHHHHH
Confidence 56777732 233566677777788888876543222211 1111 35788876 2 3 366 334
Q ss_pred HHHhc--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 83 LETAK--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 83 Le~Ir--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
++ +. ++||+.+.. |=.+||. .++.+++..++..+++..
T Consensus 74 ~~-~~~~~~pi~gIn~--------------------------G~lGFl~-~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 74 EH-KTKKDIPILGINM--------------------------GTLGFLT-EVEPEETFFALSRLLEGD 113 (277)
T ss_pred HH-hcCCCCeEEEEeC--------------------------CCCCccc-cCCHHHHHHHHHHHHcCC
Confidence 44 33 688887653 4346665 677888888888887654
No 187
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=55.61 E-value=84 Score=27.19 Aligned_cols=72 Identities=18% Similarity=0.184 Sum_probs=36.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~-~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVI 92 (572)
.+|++||.++...+. ++..|+.+.... +-.+.|+.+.- ...+.||+...-. ..-+.++..++ +.++|
T Consensus 22 ~~vvvid~d~~~~~~----~~~~~~~~i~gd~~~~~~l~~a~i--~~a~~vv~~~~~d--~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 22 IDVVVIDRDPERVEE----LREEGVEVIYGDATDPEVLERAGI--EKADAVVILTDDD--EENLLIALLARELNPDIRII 93 (116)
T ss_dssp SEEEEEESSHHHHHH----HHHTTSEEEES-TTSHHHHHHTTG--GCESEEEEESSSH--HHHHHHHHHHHHHTTTSEEE
T ss_pred CEEEEEECCcHHHHH----HHhcccccccccchhhhHHhhcCc--cccCEEEEccCCH--HHHHHHHHHHHHHCCCCeEE
Confidence 467777777666333 334456555322 22445555544 5667777654321 12233333343 45666
Q ss_pred EEeCC
Q 008254 93 ITSNI 97 (572)
Q Consensus 93 iLS~~ 97 (572)
+....
T Consensus 94 ~~~~~ 98 (116)
T PF02254_consen 94 ARVND 98 (116)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 55543
No 188
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=55.43 E-value=88 Score=35.60 Aligned_cols=97 Identities=15% Similarity=0.206 Sum_probs=63.7
Q ss_pred ccEEEEEeCCH----HHHHHHHHHHHhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCC--------------CCC
Q 008254 17 GLRVLLLDQDS----SAAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVT--------------TSN 75 (572)
Q Consensus 17 ~lRVLVVDDD~----~~~~~L~~lL~~~-gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~--------------mPd 75 (572)
+..|+++|--. ...+.++.+=+.. +-.|. -+.+.++|..++.. .+|.|++-++ .|.
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a---GaD~i~vg~g~G~~~~t~~~~~~g~~~ 336 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA---GVDGLRVGMGSGSICTTQEVCAVGRGQ 336 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccCccccccCCCc
Confidence 56678887542 1123333333333 33443 57889999888876 6898876421 122
Q ss_pred CCChHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 76 TDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 76 ~mdG~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
...+..+..+. ++|||+=.+......+.+|+. +||+..++=
T Consensus 337 -~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla-------------~GA~~V~vG 380 (505)
T PLN02274 337 -ATAVYKVASIAAQHGVPVIADGGISNSGHIVKALT-------------LGASTVMMG 380 (505)
T ss_pred -ccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHH-------------cCCCEEEEc
Confidence 22344455443 699999999999999999999 999988774
No 189
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=55.42 E-value=30 Score=32.64 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=40.9
Q ss_pred CCccEEEEEeCCHHH---------HHHHHHHHHhCC-CEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCC
Q 008254 15 PKGLRVLLLDQDSSA---------AAELKFKLEAMD-YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (572)
Q Consensus 15 p~~lRVLVVDDD~~~---------~~~L~~lL~~~g-y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd 75 (572)
.+.++|.|||.|... .+.|...|+... +.+.. .+.++|.+.+++ +..+.+|+ .|.
T Consensus 41 ~~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l~~--g~~~~~iv---IP~ 105 (164)
T TIGR03061 41 LDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGLAD--GKYYMVIT---IPE 105 (164)
T ss_pred cCCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHhHc--CcEEEEEE---ECc
Confidence 457899999999875 466666676653 45443 489999999999 78888774 565
No 190
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=55.03 E-value=47 Score=35.27 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=51.7
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEeC------------------------------C---C--CCCCChHHHHHHhc---
Q 008254 46 TFYNENEALSAFSDKPENFHVAIVEV------------------------------T---T--SNTDGSFKFLETAK--- 87 (572)
Q Consensus 46 ta~~a~EAL~~L~e~~~~pDLVIvDv------------------------------~---m--Pd~mdG~~lLe~Ir--- 87 (572)
-+++.+||+...+. .+|+|=+=+ . . .. ..++++|+.+.
T Consensus 118 D~stleEal~a~~~---Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~-~~d~elLk~l~~~~ 193 (283)
T cd04727 118 GARNLGEALRRISE---GAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEI-QAPYELVKETAKLG 193 (283)
T ss_pred cCCCHHHHHHHHHC---CCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccc-CCCHHHHHHHHHhc
Confidence 57788999998887 688876644 0 0 11 24788888886
Q ss_pred CCcEE--EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 88 DLPTI--ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 88 dlPVI--iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
.+||| ...+....+.+.+++. .||+++++=
T Consensus 194 ~iPVV~iAeGGI~Tpena~~v~e-------------~GAdgVaVG 225 (283)
T cd04727 194 RLPVVNFAAGGVATPADAALMMQ-------------LGADGVFVG 225 (283)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHH-------------cCCCEEEEc
Confidence 69997 7777778999999998 999998764
No 191
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=54.89 E-value=75 Score=27.52 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=48.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
|+||.-....+..++.+.+ .++.|+....-.+..+.+++ ..+.++.-|. .-.+.++++. +.-.|+++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~--~~~~~i~gd~------~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPERVEELRE--EGVEVIYGDA------TDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHHHHHHHHH--TTSEEEES-T------TSHHHHHHTTGGCESEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcHHHHHHHh--cccccccccc------hhhhHHhhcCccccCEEEEccC
Confidence 6788888766666666665 66788877777777777777 5677776554 3355677765 5555555544
Q ss_pred CChHHHHHH
Q 008254 98 HCLSTMMKC 106 (572)
Q Consensus 98 ~d~~~~~ka 106 (572)
.+...+.-+
T Consensus 72 ~d~~n~~~~ 80 (116)
T PF02254_consen 72 DDEENLLIA 80 (116)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 444444443
No 192
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=54.79 E-value=1.9e+02 Score=29.42 Aligned_cols=64 Identities=14% Similarity=0.069 Sum_probs=38.6
Q ss_pred eeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeCCC---ChHHHHHHHHHHHhhhhccccccCCccEEEeCCC--CHHHH
Q 008254 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIH---CLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDKL 137 (572)
Q Consensus 64 pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~~~---d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~eeL 137 (572)
.|++|+ +. .+..+++.+. .+|+|++.... +.....+.+. .+-.++++.+- +.++|
T Consensus 251 ad~~v~----~~--g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~-------------~~~~G~~~~~~~~~~~~l 311 (348)
T TIGR01133 251 ADLVIS----RA--GASTVAELAAAGVPAILIPYPYAADDQYYNAKFLE-------------DLGAGLVIRQKELLPEKL 311 (348)
T ss_pred CCEEEE----CC--ChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHH-------------HCCCEEEEecccCCHHHH
Confidence 466665 22 2456777775 89999864322 1111222333 45566777664 48999
Q ss_pred HHHHHHHHH
Q 008254 138 RNLWQHVVH 146 (572)
Q Consensus 138 ~~~~q~Vlr 146 (572)
.+++..++.
T Consensus 312 ~~~i~~ll~ 320 (348)
T TIGR01133 312 LEALLKLLL 320 (348)
T ss_pred HHHHHHHHc
Confidence 998887775
No 193
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=54.68 E-value=2.1e+02 Score=30.26 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=63.6
Q ss_pred HHHHHhCCCEEEEEC--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCC--h---HHHHHHhc---CCcEEEEeCCCChHHH
Q 008254 34 KFKLEAMDYIVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDG--S---FKFLETAK---DLPTIITSNIHCLSTM 103 (572)
Q Consensus 34 ~~lL~~~gy~V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~md--G---~~lLe~Ir---dlPVIiLS~~~d~~~~ 103 (572)
.+.|-+.||.|..+. |..-|-++..- .. .+|+=+.-|= .. | -..|+.|+ ++|||+=.+.+..+.+
T Consensus 130 ae~Lv~eGF~VlPY~~~D~v~a~rLed~---Gc-~aVMPlgsPI-GSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa 204 (267)
T CHL00162 130 AEFLVKKGFTVLPYINADPMLAKHLEDI---GC-ATVMPLGSPI-GSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEA 204 (267)
T ss_pred HHHHHHCCCEEeecCCCCHHHHHHHHHc---CC-eEEeeccCcc-cCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHH
Confidence 444557799998544 44444444333 22 2333333332 22 2 23444443 7999999999999999
Q ss_pred HHHHHHHHhhhhccccccCCccEEEe-----CCCCHHHHHHHHHHHHHH
Q 008254 104 MKCIAIMVMNQLFDNNFQLGAVEFLR-----KPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 104 ~kai~~~~~~~~~~~~~~~GA~dYL~-----KPvs~eeL~~~~q~Vlrr 147 (572)
..+++ +|+++.|+ |--++.++..+++++++-
T Consensus 205 ~~AmE-------------lGaDgVL~nSaIakA~dP~~mA~a~~~AV~A 240 (267)
T CHL00162 205 SQAME-------------LGASGVLLNTAVAQAKNPEQMAKAMKLAVQA 240 (267)
T ss_pred HHHHH-------------cCCCEEeecceeecCCCHHHHHHHHHHHHHH
Confidence 99999 99998864 667888888888888764
No 194
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=54.56 E-value=2.2e+02 Score=27.94 Aligned_cols=76 Identities=14% Similarity=0.083 Sum_probs=50.2
Q ss_pred HhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeC-CCCCCCChHHHHHHhc-----CCcEEEEeCCCChHHHHHHHHHH
Q 008254 38 EAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEV-TTSNTDGSFKFLETAK-----DLPTIITSNIHCLSTMMKCIAIM 110 (572)
Q Consensus 38 ~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv-~mPd~mdG~~lLe~Ir-----dlPVIiLS~~~d~~~~~kai~~~ 110 (572)
...|..+. .+.+.+++.+.... .+|++.+-- .......+++++++++ ++|||...+....+.+.+++.
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~~~---g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~-- 192 (217)
T cd00331 118 RELGMEVLVEVHDEEELERALAL---GAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAE-- 192 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHHHc---CCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHH--
Confidence 34566543 56777776666554 577776541 1110012356666654 579999999999999999998
Q ss_pred HhhhhccccccCCccEEEe
Q 008254 111 VMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 111 ~~~~~~~~~~~~GA~dYL~ 129 (572)
+||+++++
T Consensus 193 -----------~Ga~gviv 200 (217)
T cd00331 193 -----------AGADAVLI 200 (217)
T ss_pred -----------cCCCEEEE
Confidence 99999876
No 195
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=54.52 E-value=16 Score=35.55 Aligned_cols=71 Identities=14% Similarity=0.109 Sum_probs=46.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCC----h--HHHHHHhc-CCcEE
Q 008254 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDG----S--FKFLETAK-DLPTI 92 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~md----G--~~lLe~Ir-dlPVI 92 (572)
|||||....+-..+.++|+..|+.+....+....++.+.+ ..||.||+ +++.++ + .++++.+. .+||+
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iil---sgGpg~p~~~~~~~~~i~~~~~~~PvL 76 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEA--LLPLLIVI---SPGPCTPNEAGISLEAIRHFAGKLPIL 76 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHh--cCCCEEEE---cCCCCChhhcchhHHHHHHhccCCCEE
Confidence 8999999999999999999999988765533222333444 46786665 233111 1 34555543 67877
Q ss_pred EEe
Q 008254 93 ITS 95 (572)
Q Consensus 93 iLS 95 (572)
-+.
T Consensus 77 GIC 79 (188)
T TIGR00566 77 GVC 79 (188)
T ss_pred EEC
Confidence 664
No 196
>PRK14099 glycogen synthase; Provisional
Probab=54.52 E-value=1.2e+02 Score=33.99 Aligned_cols=114 Identities=16% Similarity=0.197 Sum_probs=59.1
Q ss_pred ccEEEEEeC-CHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEE
Q 008254 17 GLRVLLLDQ-DSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (572)
Q Consensus 17 ~lRVLVVDD-D~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIi 93 (572)
.++++|+.+ +....+.++.+.+..+-.+. ...- .+.+..+-. ...|++++=-. -. .-|+-.++.++ .+|+|+
T Consensus 324 ~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~-~~~l~~~~~--a~aDifv~PS~-~E-~fGl~~lEAma~G~ppVv 398 (485)
T PRK14099 324 GAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGY-DEALAHLIQ--AGADALLVPSR-FE-PCGLTQLCALRYGAVPVV 398 (485)
T ss_pred CcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCC-CHHHHHHHH--hcCCEEEECCc-cC-CCcHHHHHHHHCCCCcEE
Confidence 356666665 33455556665555433332 2222 333333211 13577776322 23 35777788777 556555
Q ss_pred EeCCCCh-HHHHHHHHHHHhhhhccccccCC-ccEEEeCCCCHHHHHHHHHHHH
Q 008254 94 TSNIHCL-STMMKCIAIMVMNQLFDNNFQLG-AVEFLRKPLSEDKLRNLWQHVV 145 (572)
Q Consensus 94 LS~~~d~-~~~~kai~~~~~~~~~~~~~~~G-A~dYL~KPvs~eeL~~~~q~Vl 145 (572)
|..+.. +++...-. ..-..| ..+|+..|-+.++|.+++..++
T Consensus 399 -s~~GGl~d~V~~~~~---------~~~~~~~~~G~l~~~~d~~~La~ai~~a~ 442 (485)
T PRK14099 399 -ARVGGLADTVVDANE---------MAIATGVATGVQFSPVTADALAAALRKTA 442 (485)
T ss_pred -eCCCCccceeecccc---------cccccCCCceEEeCCCCHHHHHHHHHHHH
Confidence 443332 22222100 000012 5799999999999999887643
No 197
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=54.51 E-value=21 Score=36.79 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=39.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHhhcCCCCeeEEEEeCCC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-------NENEALSAFSDKPENFHVAIVEVTT 73 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~-------~a~EAL~~L~e~~~~pDLVIvDv~m 73 (572)
|||||+..+-.+...|...|+..|++|.... +.++.-+.+.+ ..||+||-=..+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~--~~pd~Vin~aa~ 61 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEA--FKPDVVINCAAY 61 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHH--H--SEEEE----
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHH--hCCCeEecccee
Confidence 6999999999999999999999999888663 55555566666 678988765433
No 198
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=54.43 E-value=50 Score=33.71 Aligned_cols=79 Identities=13% Similarity=0.201 Sum_probs=52.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHH-hcC
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLET-AKD 88 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~-Ird 88 (572)
+|..-+|.-||-|+...+.-+..|++.|+ .|.... ++-+.|+.... ..||+|++|..=++-..-++.+.. ++.
T Consensus 81 l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~--~~fDliFIDadK~~yp~~le~~~~lLr~ 158 (219)
T COG4122 81 LPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLD--GSFDLVFIDADKADYPEYLERALPLLRP 158 (219)
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccC--CCccEEEEeCChhhCHHHHHHHHHHhCC
Confidence 45344999999999999999999999986 344333 66666665333 689999999865441122333222 344
Q ss_pred CcEEEE
Q 008254 89 LPTIIT 94 (572)
Q Consensus 89 lPVIiL 94 (572)
--||++
T Consensus 159 GGliv~ 164 (219)
T COG4122 159 GGLIVA 164 (219)
T ss_pred CcEEEE
Confidence 455544
No 199
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=54.30 E-value=42 Score=33.53 Aligned_cols=53 Identities=23% Similarity=0.332 Sum_probs=41.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDY--IV-STFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy--~V-~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
-++++||-|......|+.-++..+. .+ ....++..+|+.+... ..||+|++|-
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC-CcccEEEeCC
Confidence 5899999999999999999998773 33 3555666888877762 3599999995
No 200
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=53.78 E-value=43 Score=36.12 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=48.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHh--CCC---EEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHH
Q 008254 19 RVLLLDQDSSAAAELKFKLEA--MDY---IVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKF 82 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~--~gy---~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~l 82 (572)
.|+++|-|..+.+.=+..|.. +|| +|. ...++-..++.+.+ ..+|+||+|..-|. +.+-.+
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~--~~~dVii~dssdpv-gpa~~l 213 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKE--NPFDVIITDSSDPV-GPACAL 213 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhcc--CCceEEEEecCCcc-chHHHH
Confidence 478888888888888888876 477 343 56699999999887 78999999998888 777543
No 201
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=53.77 E-value=15 Score=35.83 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=46.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCC--CCCCCh--HHHHHHhc-CCcEEEE
Q 008254 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTT--SNTDGS--FKFLETAK-DLPTIIT 94 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~m--Pd~mdG--~~lLe~Ir-dlPVIiL 94 (572)
|||||....+--.|..+|+..|+++..+.+.+..++.+.. ..||.||+-=.- |. .++ .++++.+. .+||+-+
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iils~GPg~p~-~~~~~~~~~~~~~~~~PiLGI 78 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDA--LKPQKIVISPGPCTPD-EAGISLDVIRHYAGRLPILGV 78 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCEEEEcCCCCChH-HCCccHHHHHHhcCCCCEEEE
Confidence 8999999999999999999999988766654322344444 467777752211 11 111 34455443 6887755
Q ss_pred e
Q 008254 95 S 95 (572)
Q Consensus 95 S 95 (572)
.
T Consensus 79 C 79 (187)
T PRK08007 79 C 79 (187)
T ss_pred C
Confidence 3
No 202
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=53.68 E-value=45 Score=33.55 Aligned_cols=74 Identities=20% Similarity=0.158 Sum_probs=48.0
Q ss_pred cEEEEEeCCH------HHHHHHHHHHHhCCCEEEEECCHH-HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh-cCC
Q 008254 18 LRVLLLDQDS------SAAAELKFKLEAMDYIVSTFYNEN-EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA-KDL 89 (572)
Q Consensus 18 lRVLVVDDD~------~~~~~L~~lL~~~gy~V~ta~~a~-EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I-rdl 89 (572)
|+||++-... .....+...|.+.|++|..+.... ...+.+.. ..+|+|.+-..... .-...++..+ +.+
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~--~~~diih~~~~~~~-~~~~~~~~~~~~~~ 77 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEI--INADIVHLHWIHGG-FLSIEDLSKLLDRK 77 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhc--ccCCEEEEEccccC-ccCHHHHHHHHcCC
Confidence 5778776543 467778888888999887544333 34445555 78999988654444 3444555555 478
Q ss_pred cEEEE
Q 008254 90 PTIIT 94 (572)
Q Consensus 90 PVIiL 94 (572)
|+|++
T Consensus 78 ~~v~~ 82 (365)
T cd03825 78 PVVWT 82 (365)
T ss_pred CEEEE
Confidence 87765
No 203
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=53.48 E-value=60 Score=32.75 Aligned_cols=65 Identities=17% Similarity=0.290 Sum_probs=50.8
Q ss_pred CHHHHHHHhhcCCCCe-eEEEEeCCCCCCCCh--HHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccC
Q 008254 49 NENEALSAFSDKPENF-HVAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQL 122 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~p-DLVIvDv~mPd~mdG--~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~ 122 (572)
+..++++.+.. . + .++++|+..-+++.| +++++.+. .+|||+--+..+.+.+.+++. .
T Consensus 147 ~~~~~~~~~~~--~-~~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~-------------~ 210 (233)
T cd04723 147 GPEELLRRLAK--W-PEELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKK-------------L 210 (233)
T ss_pred CHHHHHHHHHH--h-CCeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH-------------c
Confidence 46777888877 5 4 599999977653444 56677664 789998888999999999998 8
Q ss_pred CccEEEe
Q 008254 123 GAVEFLR 129 (572)
Q Consensus 123 GA~dYL~ 129 (572)
||++.++
T Consensus 211 G~~~viv 217 (233)
T cd04723 211 GASGALV 217 (233)
T ss_pred CCCEEEE
Confidence 9998876
No 204
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=53.43 E-value=54 Score=31.02 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=44.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC----CHHHHHHHhhcCCCCeeEEEEeCCCCC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY----NENEALSAFSDKPENFHVAIVEVTTSN 75 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~----~a~EAL~~L~e~~~~pDLVIvDv~mPd 75 (572)
++.+|+|+.......+-|..+|.+.|+.|+.+. +.++++ + .-|+||+-+.-+.
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v---~----~ADIVvsAtg~~~ 83 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKV---H----DADVVVVGSPKPE 83 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHH---h----hCCEEEEecCCCC
Confidence 578999999999999999999999999999888 555543 3 3699999887665
No 205
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=53.12 E-value=1e+02 Score=29.61 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=46.9
Q ss_pred EEECCHHHHHHHhhcCCCCeeEEEEeCCCCC-------CCChHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHhh
Q 008254 45 STFYNENEALSAFSDKPENFHVAIVEVTTSN-------TDGSFKFLETAK----DLPTIITSNIHCLSTMMKCIAIMVMN 113 (572)
Q Consensus 45 ~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd-------~mdG~~lLe~Ir----dlPVIiLS~~~d~~~~~kai~~~~~~ 113 (572)
.++.+.+++..+.. ...|+|.++-..+. ...|+++++.+. ++||+++-+. ..+.+.++++
T Consensus 101 ~s~h~~~e~~~a~~---~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~----- 171 (196)
T TIGR00693 101 VSTHNLEELAEAEA---EGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLA----- 171 (196)
T ss_pred EeCCCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHH-----
Confidence 37778888776544 46899887554331 023678887764 5898888666 4677888877
Q ss_pred hhccccccCCccEEEe
Q 008254 114 QLFDNNFQLGAVEFLR 129 (572)
Q Consensus 114 ~~~~~~~~~GA~dYL~ 129 (572)
.|++++.+
T Consensus 172 --------~G~~gva~ 179 (196)
T TIGR00693 172 --------AGADGVAV 179 (196)
T ss_pred --------cCCCEEEE
Confidence 89988765
No 206
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=52.96 E-value=1.1e+02 Score=32.41 Aligned_cols=81 Identities=21% Similarity=0.217 Sum_probs=55.4
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCC-----C-CCCC-hHHHHHHhc---CCcEEEEeCCCChH
Q 008254 33 LKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTT-----S-NTDG-SFKFLETAK---DLPTIITSNIHCLS 101 (572)
Q Consensus 33 L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~m-----P-d~md-G~~lLe~Ir---dlPVIiLS~~~d~~ 101 (572)
+-..|+..|..|. ++.+.++|..+++. .+|.||+.=.- . . .. -+.|+..++ ++|||.--+..+-.
T Consensus 128 ~i~~l~~~gi~v~~~v~s~~~A~~a~~~---G~D~iv~qG~eAGGH~g~~-~~~~~~L~~~v~~~~~iPViaAGGI~dg~ 203 (330)
T PF03060_consen 128 VIERLHAAGIKVIPQVTSVREARKAAKA---GADAIVAQGPEAGGHRGFE-VGSTFSLLPQVRDAVDIPVIAAGGIADGR 203 (330)
T ss_dssp HHHHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEE-TTSSEE---S-SG-HHHHHHHHHHH-SS-EEEESS--SHH
T ss_pred HHHHHHHcCCccccccCCHHHHHHhhhc---CCCEEEEeccccCCCCCcc-ccceeeHHHHHhhhcCCcEEEecCcCCHH
Confidence 3455777776554 89999999988776 58999976321 1 2 22 366666665 89999988899999
Q ss_pred HHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 102 TMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 102 ~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
.+..++. +||++...=
T Consensus 204 ~iaaal~-------------lGA~gV~~G 219 (330)
T PF03060_consen 204 GIAAALA-------------LGADGVQMG 219 (330)
T ss_dssp HHHHHHH-------------CT-SEEEES
T ss_pred HHHHHHH-------------cCCCEeecC
Confidence 9999999 999998764
No 207
>PRK05637 anthranilate synthase component II; Provisional
Probab=52.82 E-value=23 Score=35.40 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=36.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIv 69 (572)
.||||||....+.-.|...|+..|+.+..+..... ++.+.. ..||.||+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~--~~~~~iIl 50 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILA--ANPDLICL 50 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHh--cCCCEEEE
Confidence 58999999999999999999999987776554321 333333 46777776
No 208
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=52.80 E-value=1.5e+02 Score=32.16 Aligned_cols=109 Identities=12% Similarity=0.145 Sum_probs=68.8
Q ss_pred ccEEEEEeCC-----HHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc
Q 008254 17 GLRVLLLDQD-----SSAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (572)
Q Consensus 17 ~lRVLVVDDD-----~~~~~~L~~lL~~~gy--~V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir 87 (572)
.++++|+.+. ....+.|+.+.+..+. .|.... +.++..+.++. .|++|.=. ... .-|+.++|.+.
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~----adv~v~~s-~~E-~Fgi~~lEAMa 346 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELST----ASIGLHTM-WNE-HFGIGVVEYMA 346 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHh----CeEEEECC-ccC-CcccHHHHHHH
Confidence 4788999874 2466777777776654 455443 35666777766 57777532 223 34778888876
Q ss_pred -CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 88 -DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 88 -dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
.+|||.....+....+..-.. .|..+||.. +.+++.+++..++.
T Consensus 347 ~G~pvIa~~~ggp~~~iv~~~~-------------~g~~G~l~~--d~~~la~ai~~ll~ 391 (419)
T cd03806 347 AGLIPLAHASGGPLLDIVVPWD-------------GGPTGFLAS--TAEEYAEAIEKILS 391 (419)
T ss_pred cCCcEEEEcCCCCchheeeccC-------------CCCceEEeC--CHHHHHHHHHHHHh
Confidence 788886543332222211001 477888863 89999998888876
No 209
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=52.51 E-value=2.3e+02 Score=29.70 Aligned_cols=105 Identities=13% Similarity=0.136 Sum_probs=54.9
Q ss_pred ccEEEEE-eCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEEE
Q 008254 17 GLRVLLL-DQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIIT 94 (572)
Q Consensus 17 ~lRVLVV-DDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiL 94 (572)
.++++++ .++....+.|+.+.+..+-.|....-.++..+++.. .|++|++ ..|..++|.+. .+|+|+.
T Consensus 230 ~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~----aD~~v~~------~gg~t~~EA~a~g~PvI~~ 299 (380)
T PRK13609 230 DLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRV----TSCMITK------PGGITLSEAAALGVPVILY 299 (380)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHh----ccEEEeC------CCchHHHHHHHhCCCEEEC
Confidence 3565544 555555666666665444234433333333344443 4777752 24666777775 8998775
Q ss_pred eCCCC-hHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 95 SNIHC-LSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 95 S~~~d-~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
..... .......+. +.|+. ...-+.++|.+.+..++.
T Consensus 300 ~~~~g~~~~n~~~~~------------~~G~~---~~~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 300 KPVPGQEKENAMYFE------------RKGAA---VVIRDDEEVFAKTEALLQ 337 (380)
T ss_pred CCCCCcchHHHHHHH------------hCCcE---EEECCHHHHHHHHHHHHC
Confidence 43221 111111111 14542 234578888888877764
No 210
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=52.37 E-value=1.2e+02 Score=31.64 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=60.7
Q ss_pred cEEEEEeCCHHH------HHHHHHHHHhCCCEEEEEC--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCCh-----HHHHH
Q 008254 18 LRVLLLDQDSSA------AAELKFKLEAMDYIVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGS-----FKFLE 84 (572)
Q Consensus 18 lRVLVVDDD~~~------~~~L~~lL~~~gy~V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG-----~~lLe 84 (572)
+++=|+.|+... .-.-.+.|-+.||.|..+. |..-|-++..- .... |+=+.-|= ..| -..|+
T Consensus 94 IKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~---Gcaa-vMPlgsPI-GSg~Gi~n~~~l~ 168 (247)
T PF05690_consen 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDA---GCAA-VMPLGSPI-GSGRGIQNPYNLR 168 (247)
T ss_dssp EEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHT---T-SE-BEEBSSST-TT---SSTHHHHH
T ss_pred EEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHC---CCCE-EEeccccc-ccCcCCCCHHHHH
Confidence 455566554432 2233455667899998444 44444444333 3333 33333342 233 23444
Q ss_pred Hhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC-----CCCHHHHHHHHHHHHH
Q 008254 85 TAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK-----PLSEDKLRNLWQHVVH 146 (572)
Q Consensus 85 ~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K-----Pvs~eeL~~~~q~Vlr 146 (572)
.|+ ++|||+=.+.+..+.+..+++ +|+++.|+- --++-.+..+.++++.
T Consensus 169 ~i~~~~~vPvIvDAGiG~pSdaa~AME-------------lG~daVLvNTAiA~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 169 IIIERADVPVIVDAGIGTPSDAAQAME-------------LGADAVLVNTAIAKAKDPVAMARAFKLAVE 225 (247)
T ss_dssp HHHHHGSSSBEEES---SHHHHHHHHH-------------TT-SEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEeCCCCCHHHHHHHHH-------------cCCceeehhhHHhccCCHHHHHHHHHHHHH
Confidence 443 899999999999999999999 999999984 4556666666666655
No 211
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=52.20 E-value=1.3e+02 Score=30.02 Aligned_cols=75 Identities=11% Similarity=0.162 Sum_probs=58.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHH-hc-CCcEEEE
Q 008254 19 RVLLLDQDSSAAAELKFKLEAMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLET-AK-DLPTIIT 94 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~~g--y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~-Ir-dlPVIiL 94 (572)
+++|+.+++..++.++++++..| |.|....+.+++++.++.....+.|+..+..+.+ .++-++. +. +-|++++
T Consensus 33 ~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~---~~~~ir~~~~~~~p~LIv 109 (176)
T PRK03958 33 KIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD---VEPEIREAHRKGEPLLIV 109 (176)
T ss_pred eEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc---hHHHHHHhhccCCcEEEE
Confidence 68999999999999999999885 7899999999999999742245788888887765 5555544 32 4577666
Q ss_pred eC
Q 008254 95 SN 96 (572)
Q Consensus 95 S~ 96 (572)
-+
T Consensus 110 vG 111 (176)
T PRK03958 110 VG 111 (176)
T ss_pred Ec
Confidence 55
No 212
>PLN02316 synthase/transferase
Probab=52.12 E-value=1.2e+02 Score=37.56 Aligned_cols=121 Identities=9% Similarity=0.049 Sum_probs=67.0
Q ss_pred ccEEEEEeC--CHHHHHHHHHHHHhCC--C--EEEEECCHHHHH--HHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-
Q 008254 17 GLRVLLLDQ--DSSAAAELKFKLEAMD--Y--IVSTFYNENEAL--SAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK- 87 (572)
Q Consensus 17 ~lRVLVVDD--D~~~~~~L~~lL~~~g--y--~V~ta~~a~EAL--~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir- 87 (572)
..+++||.+ +......|..+....+ | .|..+....+.+ .++.. .|++++=- +.. --|+-.|+.++
T Consensus 869 ~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaa----ADiflmPS-~~E-P~GLvqLEAMa~ 942 (1036)
T PLN02316 869 NGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAG----ADFILVPS-IFE-PCGLTQLTAMRY 942 (1036)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHh----CcEEEeCC-ccc-CccHHHHHHHHc
Confidence 467888875 3445566666665442 2 343322223433 33333 68887642 223 35788888887
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 88 DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
.+|+|+...-+-.+++...-. ..--.+.-..|..+|+..|-+.+.|..+|..++..
T Consensus 943 GtppVvs~vGGL~DtV~d~d~----~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 943 GSIPVVRKTGGLFDTVFDVDH----DKERAQAQGLEPNGFSFDGADAAGVDYALNRAISA 998 (1036)
T ss_pred CCCeEEEcCCCcHhhcccccc----ccccccccccCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 667776443343344332100 00000000025789999999999999988888763
No 213
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.92 E-value=1.8e+02 Score=30.82 Aligned_cols=85 Identities=11% Similarity=0.052 Sum_probs=59.8
Q ss_pred EEEEEeCCHHHH--H--HHHHHHH----hCCC---EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc
Q 008254 19 RVLLLDQDSSAA--A--ELKFKLE----AMDY---IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (572)
Q Consensus 19 RVLVVDDD~~~~--~--~L~~lL~----~~gy---~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir 87 (572)
.|||-|++-... . .+...++ ..++ ..+.+.+.+++.+++.. .+|+|++|=.-|. +--+.++.++
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~---gaDiImLDn~s~e--~l~~av~~~~ 235 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA---GVDTIMLDNFSLD--DLREGVELVD 235 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc---CCCEEEECCCCHH--HHHHHHHHhC
Confidence 388888876643 1 2444443 3443 44689999999999876 6899999964444 4555666666
Q ss_pred CCcEEEEeCCCChHHHHHHHH
Q 008254 88 DLPTIITSNIHCLSTMMKCIA 108 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~ 108 (572)
...+|-.|+.-+.+.+.+...
T Consensus 236 ~~~~leaSGgI~~~ni~~yA~ 256 (281)
T PRK06543 236 GRAIVEASGNVNLNTVGAIAS 256 (281)
T ss_pred CCeEEEEECCCCHHHHHHHHh
Confidence 556788899888888888776
No 214
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=51.53 E-value=1.1e+02 Score=27.43 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhCCCEEEEE--CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEEEeCCCChH
Q 008254 28 SAAAELKFKLEAMDYIVSTF--YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIHCLS 101 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta--~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIiLS~~~d~~ 101 (572)
.-+..+..+|++.|+++... ...++.++.+... ..||+|.+.+........+++++.+| +++|| +-+..-..
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv-~GG~~~t~ 80 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVV-VGGPHATF 80 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEE-ECCcchhh
Confidence 34567888899888876633 3556666666542 47999999886555123455667776 34444 33322211
Q ss_pred HHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHH
Q 008254 102 TMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVV 145 (572)
Q Consensus 102 ~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vl 145 (572)
.-...+. .-..||+..---..-+.+.++++.
T Consensus 81 ~p~~~~~-------------~~~~D~vv~GEgE~~~~~l~~~l~ 111 (127)
T cd02068 81 FPEEILE-------------EPGVDFVVIGEGEETFLKLLEELE 111 (127)
T ss_pred CHHHHhc-------------CCCCCEEEECCcHHHHHHHHHHHH
Confidence 1112122 445678887766666666555543
No 215
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=51.21 E-value=1.3e+02 Score=33.72 Aligned_cols=109 Identities=11% Similarity=0.065 Sum_probs=58.0
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHhhcCC--CCeeEEEEeCCCCCCCChHHHHHHh---c
Q 008254 16 KGLRVLLLDQDSSA---AAELKFKLEAMDYIVSTFYNENEALSAFSDKP--ENFHVAIVEVTTSNTDGSFKFLETA---K 87 (572)
Q Consensus 16 ~~lRVLVVDDD~~~---~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~--~~pDLVIvDv~mPd~mdG~~lLe~I---r 87 (572)
.+.+|.+|+-|+.- .+.|+..-+..+..+..+.+..+..+.+.... ..+|+||+|.-=-. ...-+.++.+ .
T Consensus 233 ~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~-~~d~~~l~EL~~l~ 311 (407)
T PRK12726 233 QNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRN-YLAEESVSEISAYT 311 (407)
T ss_pred cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCC-ccCHHHHHHHHHHh
Confidence 45789999888653 33455555556666666667666554444311 35899999983111 1112333333 2
Q ss_pred -----CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCH
Q 008254 88 -----DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSE 134 (572)
Q Consensus 88 -----dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~ 134 (572)
+.-++++++......+...++ .|+ ..+.+++|.-=++.
T Consensus 312 ~~~~p~~~~LVLsag~~~~d~~~i~~------~f~---~l~i~glI~TKLDE 354 (407)
T PRK12726 312 DVVHPDLTCFTFSSGMKSADVMTILP------KLA---EIPIDGFIITKMDE 354 (407)
T ss_pred hccCCceEEEECCCcccHHHHHHHHH------hcC---cCCCCEEEEEcccC
Confidence 333455666555555555443 011 26677776654443
No 216
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.60 E-value=1.4e+02 Score=31.56 Aligned_cols=100 Identities=14% Similarity=0.212 Sum_probs=58.1
Q ss_pred cEEEEEeC--CH---HHHHHHHHHHHhCCCEEEEECCHHHHHHH----------h---hcCCCCeeEEEEeCCCCCCCCh
Q 008254 18 LRVLLLDQ--DS---SAAAELKFKLEAMDYIVSTFYNENEALSA----------F---SDKPENFHVAIVEVTTSNTDGS 79 (572)
Q Consensus 18 lRVLVVDD--D~---~~~~~L~~lL~~~gy~V~ta~~a~EAL~~----------L---~e~~~~pDLVIvDv~mPd~mdG 79 (572)
|+|.|+-. .+ .....|...|++.|+.+.......+.+.. . ......+|+||+ +- .||
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~---lG--GDG 75 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS---IG--GDG 75 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE---EC--CcH
Confidence 45676622 22 24556666777888888765543332210 0 110124678776 22 355
Q ss_pred --HHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 80 --FKFLETAK--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 80 --~~lLe~Ir--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
+..++.+. ++||+-+. .|-.+||. .++.+++..+++.+++...
T Consensus 76 T~L~aa~~~~~~~~PilGIN--------------------------~G~lGFLt-~~~~~~~~~~l~~i~~g~~ 122 (292)
T PRK01911 76 TFLRTATYVGNSNIPILGIN--------------------------TGRLGFLA-TVSKEEIEETIDELLNGDY 122 (292)
T ss_pred HHHHHHHHhcCCCCCEEEEe--------------------------cCCCCccc-ccCHHHHHHHHHHHHcCCc
Confidence 33344432 67877543 56667777 6888999998888887654
No 217
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.31 E-value=71 Score=33.94 Aligned_cols=84 Identities=11% Similarity=0.015 Sum_probs=54.2
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC--CEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCc
Q 008254 20 VLLLDQDSSAAAELKFKLEA----MD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLP 90 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~----~g--y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlP 90 (572)
|||-|++-.....+...+++ .. ...+.+.+.+||.+++.. ..|+|++|= |+- .+--+.++.++ .-.
T Consensus 173 ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~---gaDiI~LDn-m~~-e~vk~av~~~~~~~~~v 247 (289)
T PRK07896 173 ALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAE---GAELVLLDN-FPV-WQTQEAVQRRDARAPTV 247 (289)
T ss_pred eeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHc---CCCEEEeCC-CCH-HHHHHHHHHHhccCCCE
Confidence 66666665554444444443 22 255688999999999876 689999993 332 23344444432 334
Q ss_pred EEEEeCCCChHHHHHHHH
Q 008254 91 TIITSNIHCLSTMMKCIA 108 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~ 108 (572)
.|..|+.-+.+.+.+...
T Consensus 248 ~ieaSGGI~~~ni~~yA~ 265 (289)
T PRK07896 248 LLESSGGLTLDTAAAYAE 265 (289)
T ss_pred EEEEECCCCHHHHHHHHh
Confidence 677788888888877766
No 218
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=50.17 E-value=53 Score=34.63 Aligned_cols=84 Identities=11% Similarity=0.107 Sum_probs=54.2
Q ss_pred EEEEeCCHHHHH---HHHHHHH----hC--CCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---
Q 008254 20 VLLLDQDSSAAA---ELKFKLE----AM--DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--- 87 (572)
Q Consensus 20 VLVVDDD~~~~~---~L~~lL~----~~--gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--- 87 (572)
|||-|++-.... .+...++ .. ....+.+.+.++|.+++.. .+|+|++|= |+. .+-.+.++.++
T Consensus 159 ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~---GaDiI~lDn-~~~-e~l~~~v~~l~~~~ 233 (277)
T TIGR01334 159 LLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQA---SPDILQLDK-FTP-QQLHHLHERLKFFD 233 (277)
T ss_pred heehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CcCEEEECC-CCH-HHHHHHHHHHhccC
Confidence 677776655443 3444333 22 2245578899999999876 689999993 443 34555556563
Q ss_pred CCcEEEEeCCCChHHHHHHHH
Q 008254 88 DLPTIITSNIHCLSTMMKCIA 108 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~ 108 (572)
.-.+|-.|+.-+.+.+.....
T Consensus 234 ~~~~leasGGI~~~ni~~ya~ 254 (277)
T TIGR01334 234 HIPTLAAAGGINPENIADYIE 254 (277)
T ss_pred CCEEEEEECCCCHHHHHHHHh
Confidence 233566788778888777666
No 219
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=50.00 E-value=2.4e+02 Score=30.56 Aligned_cols=96 Identities=14% Similarity=0.118 Sum_probs=61.7
Q ss_pred EEEEEeCC----HHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCCC----------CCCC--h
Q 008254 19 RVLLLDQD----SSAAAELKFKLEAMD-YIVS--TFYNENEALSAFSDKPENFHVAIVEVTTS----------NTDG--S 79 (572)
Q Consensus 19 RVLVVDDD----~~~~~~L~~lL~~~g-y~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~mP----------d~md--G 79 (572)
.+++||-- ....+.++.+=+... -.|. .+.+.++|..++.. .+|++++-..=- .... +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a---Gad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc---CcCEEEECCCCCcccccccccCCCCCccH
Confidence 67888642 233333333333332 3333 47899999888776 688876442111 0011 3
Q ss_pred HHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 80 FKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 80 ~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
+..+..+. ++|||.--+......+.+|+. +||+.+..=
T Consensus 190 l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa-------------~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKAARKPIIADGGIRTHGDIAKSIR-------------FGATMVMIG 230 (326)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHH-------------hCCCEEEec
Confidence 44465554 799999999999999999999 999988775
No 220
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=49.81 E-value=2.4e+02 Score=28.08 Aligned_cols=103 Identities=10% Similarity=0.057 Sum_probs=59.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC---CCEEEEEC--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAM---DYIVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPT 91 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~---gy~V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPV 91 (572)
.+++|+.+.... ..+...+... .-.|.... +..+..+.+.. .|++++=..... .-|+.++|.+. .+||
T Consensus 198 ~~l~i~G~~~~~-~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~----~d~~v~ps~~~E-~~~~~~lEAma~G~Pv 271 (335)
T cd03802 198 IPLKLAGPVSDP-DYFYREIAPELLDGPDIEYLGEVGGAEKAELLGN----ARALLFPILWEE-PFGLVMIEAMACGTPV 271 (335)
T ss_pred CeEEEEeCCCCH-HHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHh----CcEEEeCCcccC-CcchHHHHHHhcCCCE
Confidence 567777766422 1222222221 23344333 44555666665 577776444334 45788888886 8998
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVV 145 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vl 145 (572)
|.....+. . +.+. .|..+|+..+ .++|.+++..+.
T Consensus 272 I~~~~~~~-~---e~i~-------------~~~~g~l~~~--~~~l~~~l~~l~ 306 (335)
T cd03802 272 IAFRRGAV-P---EVVE-------------DGVTGFLVDS--VEELAAAVARAD 306 (335)
T ss_pred EEeCCCCc-h---hhee-------------CCCcEEEeCC--HHHHHHHHHHHh
Confidence 85543222 2 2233 6778999987 888888887664
No 221
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=49.47 E-value=2.1e+02 Score=31.66 Aligned_cols=108 Identities=13% Similarity=0.143 Sum_probs=62.7
Q ss_pred CccEEEEEeCCHHHHHH---HHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh----c-
Q 008254 16 KGLRVLLLDQDSSAAAE---LKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA----K- 87 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~---L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I----r- 87 (572)
.+.+|.+|+-|..-... |+.+.+..|..+..+.+..+..+.+... ..+|+||+|.-=-...+... +.++ .
T Consensus 205 ~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~~~~~~~-l~el~~~l~~ 282 (388)
T PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDTIGKSPKDFMK-LAEMKELLNA 282 (388)
T ss_pred CCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCCccCHHH-HHHHHHHHHh
Confidence 35689999888643333 4444444577777777776666655543 56899999983211023332 2222 1
Q ss_pred ---C-CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCH
Q 008254 88 ---D-LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSE 134 (572)
Q Consensus 88 ---d-lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~ 134 (572)
+ -.++++++......+.+.+. ..-..|.+++|.-=++.
T Consensus 283 ~~~~~e~~LVlsat~~~~~~~~~~~---------~~~~~~~~~~I~TKlDe 324 (388)
T PRK12723 283 CGRDAEFHLAVSSTTKTSDVKEIFH---------QFSPFSYKTVIFTKLDE 324 (388)
T ss_pred cCCCCeEEEEEcCCCCHHHHHHHHH---------HhcCCCCCEEEEEeccC
Confidence 2 35677888777776666555 11225677776654443
No 222
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.25 E-value=1.2e+02 Score=31.97 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=57.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhC----C--CEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-----C
Q 008254 20 VLLLDQDSSAAAELKFKLEAM----D--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----D 88 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~~----g--y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-----d 88 (572)
|||-|++-... .+...++.. . -..+.+.+.++|.+++.. ..|+|++|=..|. +--+..+.++ .
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a---gaDiI~LDn~~~e--~l~~~v~~l~~~~~~~ 230 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA---GADIIMLDNMTPE--EIREVIEALKREGLRE 230 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CcCEEEECCCCHH--HHHHHHHHHHhcCcCC
Confidence 88888886655 566666542 1 144588999999999986 6799999975554 3444445443 2
Q ss_pred CcEEEEeCCCChHHHHHHHH
Q 008254 89 LPTIITSNIHCLSTMMKCIA 108 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~ 108 (572)
-..|..|+.-+.+.+.+...
T Consensus 231 ~~~leaSGGI~~~ni~~yA~ 250 (278)
T PRK08385 231 RVKIEVSGGITPENIEEYAK 250 (278)
T ss_pred CEEEEEECCCCHHHHHHHHH
Confidence 34567787888888887777
No 223
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=49.05 E-value=89 Score=31.72 Aligned_cols=64 Identities=11% Similarity=0.150 Sum_probs=49.7
Q ss_pred HHHHHHhhcCCCC-eeEEEEeCCCCCCCCh--HHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCc
Q 008254 51 NEALSAFSDKPEN-FHVAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGA 124 (572)
Q Consensus 51 ~EAL~~L~e~~~~-pDLVIvDv~mPd~mdG--~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA 124 (572)
.+.++.+.+ .. -.++++|+..-+++.| +++++.+. ++|||+--+..+.+.+.++++ .|+
T Consensus 151 ~~~~~~~~~--~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~-------------~G~ 215 (234)
T PRK13587 151 FSFVRQLSD--IPLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLAS-------------LNV 215 (234)
T ss_pred HHHHHHHHH--cCCCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-------------cCC
Confidence 666666666 33 3699999987664555 56677774 789998888899999999888 999
Q ss_pred cEEEe
Q 008254 125 VEFLR 129 (572)
Q Consensus 125 ~dYL~ 129 (572)
++.++
T Consensus 216 ~~viv 220 (234)
T PRK13587 216 HAAII 220 (234)
T ss_pred CEEEE
Confidence 99887
No 224
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=48.99 E-value=53 Score=32.01 Aligned_cols=84 Identities=14% Similarity=0.097 Sum_probs=55.9
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CCC---EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CC
Q 008254 20 VLLLDQDSSAAAELKFKLEA----MDY---IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DL 89 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~----~gy---~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dl 89 (572)
|||-|.+-.+...+...++. .+. ..+.+.+.+++.+++.. .+|+|.+|-.-|. +--++++.++ .-
T Consensus 53 ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~---g~d~I~lD~~~~~--~~~~~v~~l~~~~~~ 127 (169)
T PF01729_consen 53 ILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEA---GADIIMLDNMSPE--DLKEAVEELRELNPR 127 (169)
T ss_dssp EEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHT---T-SEEEEES-CHH--HHHHHHHHHHHHTTT
T ss_pred EEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHh---CCCEEEecCcCHH--HHHHHHHHHhhcCCc
Confidence 66666666655555555443 222 34588999999999987 5999999976554 4455555443 34
Q ss_pred cEEEEeCCCChHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIA 108 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~ 108 (572)
..|..|+.-+.+.+.+...
T Consensus 128 v~ie~SGGI~~~ni~~ya~ 146 (169)
T PF01729_consen 128 VKIEASGGITLENIAEYAK 146 (169)
T ss_dssp SEEEEESSSSTTTHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHh
Confidence 7788888888888888777
No 225
>PLN02591 tryptophan synthase
Probab=48.31 E-value=1.8e+02 Score=30.18 Aligned_cols=100 Identities=13% Similarity=0.120 Sum_probs=63.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEE-EE--CCHHHHHHHhhcCCCCeeEEEEeCCCCCC-----CChHHHHHHhc---C
Q 008254 20 VLLLDQDSSAAAELKFKLEAMDYIVS-TF--YNENEALSAFSDKPENFHVAIVEVTTSNT-----DGSFKFLETAK---D 88 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~~gy~V~-ta--~~a~EAL~~L~e~~~~pDLVIvDv~mPd~-----mdG~~lLe~Ir---d 88 (572)
|+|.|-.......+...+++.|...+ .+ ++.++=++.+.+....|=-+|.=....+. .+..++++++| +
T Consensus 110 viipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~ 189 (250)
T PLN02591 110 LVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTD 189 (250)
T ss_pred EEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCC
Confidence 67777777778888888888887544 22 23344444444422344333332222220 12345566665 8
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCC
Q 008254 89 LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL 132 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv 132 (572)
+||++=.+..+.+.+.+.+. .||++.++-..
T Consensus 190 ~Pv~vGFGI~~~e~v~~~~~-------------~GADGvIVGSa 220 (250)
T PLN02591 190 KPVAVGFGISKPEHAKQIAG-------------WGADGVIVGSA 220 (250)
T ss_pred CceEEeCCCCCHHHHHHHHh-------------cCCCEEEECHH
Confidence 99998778888889988888 99999998653
No 226
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.15 E-value=1.2e+02 Score=32.46 Aligned_cols=85 Identities=11% Similarity=0.048 Sum_probs=58.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC----C-C-EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEE
Q 008254 19 RVLLLDQDSSAAAELKFKLEAM----D-Y-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~~----g-y-~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVI 92 (572)
-|||-|++-.....+...++.. . . ..+.+.+.++|.+++.. .+|+|++|=.-|+ +--+.++.++.-.+|
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~a---GaDiImLDnmspe--~l~~av~~~~~~~~l 252 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAH---GAQSVLLDNFTLD--MMREAVRVTAGRAVL 252 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHhhcCCeEE
Confidence 4788888776665555555432 1 2 34588999999999976 6899999964444 445555555554567
Q ss_pred EEeCCCChHHHHHHHH
Q 008254 93 ITSNIHCLSTMMKCIA 108 (572)
Q Consensus 93 iLS~~~d~~~~~kai~ 108 (572)
-.|+.-..+.+.+...
T Consensus 253 EaSGGIt~~ni~~yA~ 268 (294)
T PRK06978 253 EVSGGVNFDTVRAFAE 268 (294)
T ss_pred EEECCCCHHHHHHHHh
Confidence 7888888888777666
No 227
>CHL00101 trpG anthranilate synthase component 2
Probab=48.00 E-value=21 Score=34.78 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=35.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008254 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIv 69 (572)
|||||....+-..|.+.|+..|+.+..+......+..+.. ..+|.||+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiii 49 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKN--LNIRHIII 49 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhh--CCCCEEEE
Confidence 8999999999999999999999888766644322333333 45787774
No 228
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=47.94 E-value=1.6e+02 Score=31.14 Aligned_cols=99 Identities=12% Similarity=0.161 Sum_probs=57.3
Q ss_pred EEEEEeC--CHH---HHHHHHHHHHhCCCEEEEECCHHHHHHH-------hhcCCCCeeEEEEeCCCCCCCCh--HHHHH
Q 008254 19 RVLLLDQ--DSS---AAAELKFKLEAMDYIVSTFYNENEALSA-------FSDKPENFHVAIVEVTTSNTDGS--FKFLE 84 (572)
Q Consensus 19 RVLVVDD--D~~---~~~~L~~lL~~~gy~V~ta~~a~EAL~~-------L~e~~~~pDLVIvDv~mPd~mdG--~~lLe 84 (572)
+|+|+-. .+. ....+...|+..|+.+....+....+.. ..+....+|+||+ +- .|| +..++
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~---~G--GDGt~l~~~~ 81 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV---LG--GDGTMLGIGR 81 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE---EC--CcHHHHHHHH
Confidence 4777732 233 3566666677788887765433222110 0111124788886 22 355 33344
Q ss_pred Hhc--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 85 TAK--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 85 ~Ir--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
.+. ++|++=+. .|=.+||. .++.+++...+..+++...
T Consensus 82 ~~~~~~~pilGIn--------------------------~G~lGFL~-~~~~~~~~~~l~~~~~g~~ 121 (291)
T PRK02155 82 QLAPYGVPLIGIN--------------------------HGRLGFIT-DIPLDDMQETLPPMLAGNY 121 (291)
T ss_pred HhcCCCCCEEEEc--------------------------CCCccccc-cCCHHHHHHHHHHHHcCCc
Confidence 332 67766442 56677888 7888999998888876543
No 229
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.66 E-value=1.3e+02 Score=31.97 Aligned_cols=85 Identities=9% Similarity=0.067 Sum_probs=60.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CCC---EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcE
Q 008254 19 RVLLLDQDSSAAAELKFKLEA----MDY---IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPT 91 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~----~gy---~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPV 91 (572)
-|||-|++-.....+...+++ ..+ ..+.+.+.+||.+++.. .+|+|++|=.-|. +--+.++.++.-.+
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a---gaDiImLDnmspe--~l~~av~~~~~~~~ 243 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA---GADIIMLDNMSLE--QIEQAITLIAGRSR 243 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhcCceE
Confidence 488888887776656665553 343 34588999999999976 6899999965454 45555665565456
Q ss_pred EEEeCCCChHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIA 108 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~ 108 (572)
|-.|+.-+.+.+.....
T Consensus 244 leaSGGI~~~ni~~yA~ 260 (290)
T PRK06559 244 IECSGNIDMTTISRFRG 260 (290)
T ss_pred EEEECCCCHHHHHHHHh
Confidence 77888888888877666
No 230
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=47.45 E-value=99 Score=31.31 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS~ 96 (572)
+...+...+.+.||.+..+.+ . .++++.+.+ ..+|-||+--...+ ....++++...++|||++..
T Consensus 74 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiI~~~~~~~-~~~~~~l~~~~~iPvV~i~~ 144 (327)
T PRK10423 74 LVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQ--KRVDGLLLLCTETH-QPSREIMQRYPSVPTVMMDW 144 (327)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEeCCCcc-hhhHHHHHhcCCCCEEEECC
Confidence 455666777788998765432 2 245666666 67887776322222 23344555445799998853
No 231
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=47.41 E-value=1.5e+02 Score=33.70 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=25.4
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCC
Q 008254 88 DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKP 131 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KP 131 (572)
++|||.=-+......+.+|+. +||+..+.=-
T Consensus 344 ~v~vIadGGi~~~~di~kAla-------------~GA~~Vm~G~ 374 (495)
T PTZ00314 344 GVPCIADGGIKNSGDICKALA-------------LGADCVMLGS 374 (495)
T ss_pred CCeEEecCCCCCHHHHHHHHH-------------cCCCEEEECc
Confidence 578777667888899999999 9999887743
No 232
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=46.91 E-value=1.9e+02 Score=28.93 Aligned_cols=104 Identities=10% Similarity=0.161 Sum_probs=63.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIi 93 (572)
.++++++.+.+.. +.+...++..+. .|.......+..+++.. .|++|+--...+ -|..+++.+. .+|||+
T Consensus 219 ~~~l~i~G~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s~~e~--~~~~~~Ea~a~G~PvI~ 291 (360)
T cd04951 219 DIKLLIAGDGPLR-ATLERLIKALGLSNRVKLLGLRDDIAAYYNA----ADLFVLSSAWEG--FGLVVAEAMACELPVVA 291 (360)
T ss_pred CeEEEEEcCCCcH-HHHHHHHHhcCCCCcEEEecccccHHHHHHh----hceEEecccccC--CChHHHHHHHcCCCEEE
Confidence 4677888765533 456666665542 45544444455555555 577776433322 4778888886 789875
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
+..+... +.+. . .+++..+-+.+++.+++..++.
T Consensus 292 -~~~~~~~---e~i~-------------~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 292 -TDAGGVR---EVVG-------------D--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred -ecCCChh---hEec-------------C--CceEeCCCCHHHHHHHHHHHHh
Confidence 3333211 1111 2 5678889999999998888863
No 233
>PRK05670 anthranilate synthase component II; Provisional
Probab=46.84 E-value=24 Score=34.12 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=44.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCC------hHHHHHHhc-CCcEE
Q 008254 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDG------SFKFLETAK-DLPTI 92 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~md------G~~lLe~Ir-dlPVI 92 (572)
|||||....+-..+.+.|++.|+.+............+.. ..+|.||+ +++.++ -.++++.+. .+||+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglIl---sgGpg~~~d~~~~~~~l~~~~~~~PvL 76 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEA--LNPDAIVL---SPGPGTPAEAGISLELIREFAGKVPIL 76 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHh--CCCCEEEE---cCCCCChHHcchHHHHHHHhcCCCCEE
Confidence 8999999999999999999999987765443211222333 34787776 222111 133454443 57877
Q ss_pred EEe
Q 008254 93 ITS 95 (572)
Q Consensus 93 iLS 95 (572)
-+.
T Consensus 77 GIC 79 (189)
T PRK05670 77 GVC 79 (189)
T ss_pred EEC
Confidence 664
No 234
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=46.73 E-value=1.3e+02 Score=32.06 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=41.3
Q ss_pred ChHHHHHHhc---CCcEE--EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe-----CCCCHHHHHHHHHHHHHH
Q 008254 78 GSFKFLETAK---DLPTI--ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR-----KPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 78 dG~~lLe~Ir---dlPVI--iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~-----KPvs~eeL~~~~q~Vlrr 147 (572)
-++++|+.++ .+||| ...+....+.+..+++ +||+++++ |.-++.+....+..++..
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~me-------------lGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQ-------------LGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHH-------------cCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 4788888886 79999 6677778999999999 99999865 344555555555444443
No 235
>PRK14974 cell division protein FtsY; Provisional
Probab=46.70 E-value=2.3e+02 Score=30.62 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=33.6
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHHhCCCEEEEECC-------HHHHHHHhhcCCCCeeEEEEeCC
Q 008254 16 KGLRVLLLDQDS---SAAAELKFKLEAMDYIVSTFYN-------ENEALSAFSDKPENFHVAIVEVT 72 (572)
Q Consensus 16 ~~lRVLVVDDD~---~~~~~L~~lL~~~gy~V~ta~~-------a~EAL~~L~e~~~~pDLVIvDv~ 72 (572)
.+.+|++++-|. ...+.|+......|..+..... ..+|++.+.. ..+|+||+|..
T Consensus 167 ~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~--~~~DvVLIDTa 231 (336)
T PRK14974 167 NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKA--RGIDVVLIDTA 231 (336)
T ss_pred cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHh--CCCCEEEEECC
Confidence 356898888774 3334455555566665543222 2355556555 57899999984
No 236
>PRK14967 putative methyltransferase; Provisional
Probab=46.67 E-value=2.2e+02 Score=28.04 Aligned_cols=48 Identities=15% Similarity=0.040 Sum_probs=34.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 19 RVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
+|..+|-++...+..+..++..+..+. ...+..+ .+.. ..||+||++.
T Consensus 61 ~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~--~~fD~Vi~np 109 (223)
T PRK14967 61 SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEF--RPFDVVVSNP 109 (223)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccC--CCeeEEEECC
Confidence 899999999988888887776665544 3334433 3344 6799999983
No 237
>PRK04148 hypothetical protein; Provisional
Probab=46.62 E-value=1.7e+02 Score=27.70 Aligned_cols=56 Identities=13% Similarity=0.107 Sum_probs=45.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd 75 (572)
++.+||.|.-= ....+...|.+.|++|+.+..-++|++.+++ ...++++.|+.-|+
T Consensus 16 ~~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~--~~~~~v~dDlf~p~ 71 (134)
T PRK04148 16 KNKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKK--LGLNAFVDDLFNPN 71 (134)
T ss_pred cCCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHH--hCCeEEECcCCCCC
Confidence 34789988877 3334666777889999999988889998888 67899999999888
No 238
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=46.39 E-value=2.1e+02 Score=31.89 Aligned_cols=98 Identities=15% Similarity=0.130 Sum_probs=61.5
Q ss_pred CccEEEEEeC---CH-HHHHHHHHHHHhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCCCCC---------C--
Q 008254 16 KGLRVLLLDQ---DS-SAAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT---------D-- 77 (572)
Q Consensus 16 ~~lRVLVVDD---D~-~~~~~L~~lL~~~-gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~---------m-- 77 (572)
.+..|++||- +. ...+.++.+=+.. +..|. -+.+.++|..++.. .+|.|.+-+. |+. .
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a---GaD~I~vG~g-~Gs~c~tr~~~g~g~ 239 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIG-PGSICTTRIVAGVGV 239 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc---CCCEEEECCC-CCcCCcceeecCCCC
Confidence 3667888775 22 2223333332222 22332 57888899888876 5888886431 110 0
Q ss_pred ChHHHH---HHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 78 GSFKFL---ETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 78 dG~~lL---e~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
..+..+ ..+. .+|||+=-+......+.+|+. +||+.+++=
T Consensus 240 p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALa-------------lGA~aVmvG 285 (404)
T PRK06843 240 PQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIA-------------AGADSVMIG 285 (404)
T ss_pred ChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHH-------------cCCCEEEEc
Confidence 113333 3332 699999888999999999999 999998874
No 239
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=46.35 E-value=3.5e+02 Score=27.91 Aligned_cols=106 Identities=13% Similarity=0.135 Sum_probs=64.0
Q ss_pred ccEEEEEeCCH-------HHHHHHHHHHHh-CCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHH
Q 008254 17 GLRVLLLDQDS-------SAAAELKFKLEA-MDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLE 84 (572)
Q Consensus 17 ~lRVLVVDDD~-------~~~~~L~~lL~~-~gy--~V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe 84 (572)
.++++++.+.. .....|+.+++. .+. .|.... +.++....+.. .|++++--.. . .-|.-+++
T Consensus 245 ~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~----ad~~l~~s~~-E-~~g~~~lE 318 (392)
T cd03805 245 NVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSS----ARALLYTPSN-E-HFGIVPLE 318 (392)
T ss_pred CeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhh----CeEEEECCCc-C-CCCchHHH
Confidence 56778887532 234566666666 443 344333 33444555554 5777764332 2 23666777
Q ss_pred Hhc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 85 TAK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 85 ~Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
.+. .+|||..-..+. .+.+. .|..+|+..+ +.+++.+.+..++.
T Consensus 319 Ama~G~PvI~s~~~~~----~e~i~-------------~~~~g~~~~~-~~~~~a~~i~~l~~ 363 (392)
T cd03805 319 AMYAGKPVIACNSGGP----LETVV-------------DGETGFLCEP-TPEEFAEAMLKLAN 363 (392)
T ss_pred HHHcCCCEEEECCCCc----HHHhc-------------cCCceEEeCC-CHHHHHHHHHHHHh
Confidence 776 899987543322 22333 5677888866 89999998887765
No 240
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=46.13 E-value=1e+02 Score=29.90 Aligned_cols=63 Identities=11% Similarity=0.061 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~------a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
.+...+...+++.||.+..+.. ..++++.+.+ ..+|.||+....++ -..++++. ++|||++-.
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~~dgiii~~~~~~----~~~~~~~~~~~ipvV~i~~ 86 (270)
T cd06296 16 EVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSA--RRTDGVILVTPELT----SAQRAALRRTGIPFVVVDP 86 (270)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHH--cCCCEEEEecCCCC----hHHHHHHhcCCCCEEEEec
Confidence 4556777778888998875442 2356777777 67998877543333 23466654 799999854
No 241
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=46.10 E-value=4.1e+02 Score=29.20 Aligned_cols=113 Identities=19% Similarity=0.180 Sum_probs=69.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE-E-EEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh----cCCcE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYI-V-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA----KDLPT 91 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~-V-~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I----rdlPV 91 (572)
-+|..+|-++...+.++.-++..+.. + +...++...+.... ..||+|++|- ++ ....++..+ ++--+
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~---~~fDvIdlDP--fG--s~~~fld~al~~~~~~gl 142 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRN---RKFHVIDIDP--FG--TPAPFVDSAIQASAERGL 142 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhC---CCCCEEEeCC--CC--CcHHHHHHHHHhcccCCE
Confidence 47999999999999999988876542 3 34456666655432 4699999986 44 233455443 45568
Q ss_pred EEEeCCCChHH----HHHHHHHHHhhhhccccccCCccEEEeCCC--CHHHHHHHHHHHHHHHHhc
Q 008254 92 IITSNIHCLST----MMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDKLRNLWQHVVHKAFNA 151 (572)
Q Consensus 92 IiLS~~~d~~~----~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~eeL~~~~q~Vlrr~~~~ 151 (572)
|.+|+.+...+ ...|+.+ .|+.- +|.- ..--|+-.+..+.+.+...
T Consensus 143 L~vTaTD~~~L~G~~~~~~~rk------------Yga~~--~~~~~~~E~glRiLlg~i~r~Aa~~ 194 (374)
T TIGR00308 143 LLVTATDTSALCGNYPKSCLRK------------YGANP--VKTESCHESALRLLLGFVKRTAAKY 194 (374)
T ss_pred EEEEecccHHhcCCChHHHHHH------------hCCcc--cCCcchHHHHHHHHHHHHHHHHHHc
Confidence 88887654433 3555552 56543 2322 2334566666666655443
No 242
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=46.09 E-value=3e+02 Score=27.07 Aligned_cols=73 Identities=18% Similarity=0.254 Sum_probs=46.2
Q ss_pred HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEE
Q 008254 50 ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFL 128 (572)
Q Consensus 50 a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL 128 (572)
.++..+.+.. .|++|.-.. .+ ..|..+++.+. .+|||.. ..+. ..+.+. .|..+++
T Consensus 269 ~~~~~~~~~~----ad~~l~~s~-~e-~~~~~~~Ea~~~g~PvI~~-~~~~---~~~~i~-------------~~~~g~~ 325 (374)
T cd03817 269 REELPDYYKA----ADLFVFAST-TE-TQGLVLLEAMAAGLPVVAV-DAPG---LPDLVA-------------DGENGFL 325 (374)
T ss_pred hHHHHHHHHH----cCEEEeccc-cc-CcChHHHHHHHcCCcEEEe-CCCC---hhhhee-------------cCceeEE
Confidence 3455555554 467665433 33 35678888876 8998854 3332 223333 7788999
Q ss_pred eCCCCHHHHHHHHHHHHH
Q 008254 129 RKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 129 ~KPvs~eeL~~~~q~Vlr 146 (572)
..+.+. ++.+.+..++.
T Consensus 326 ~~~~~~-~~~~~i~~l~~ 342 (374)
T cd03817 326 FPPGDE-ALAEALLRLLQ 342 (374)
T ss_pred eCCCCH-HHHHHHHHHHh
Confidence 998877 78887777765
No 243
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=45.98 E-value=1.4e+02 Score=33.91 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=21.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEe
Q 008254 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVE 70 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvD 70 (572)
+|+||.-...-+ .+.+.|++.|++++..+.-++.++.+++ ..+.++.-|
T Consensus 419 hiiI~G~G~~G~-~la~~L~~~g~~vvvId~d~~~~~~~~~--~g~~~i~GD 467 (558)
T PRK10669 419 HALLVGYGRVGS-LLGEKLLAAGIPLVVIETSRTRVDELRE--RGIRAVLGN 467 (558)
T ss_pred CEEEECCChHHH-HHHHHHHHCCCCEEEEECCHHHHHHHHH--CCCeEEEcC
Confidence 455555444333 2333444444554444444444444443 334444443
No 244
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=45.87 E-value=1.1e+02 Score=30.77 Aligned_cols=67 Identities=10% Similarity=0.216 Sum_probs=50.3
Q ss_pred CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCCh--HHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccC
Q 008254 48 YNENEALSAFSDKPENFHVAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQL 122 (572)
Q Consensus 48 ~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG--~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~ 122 (572)
.+..+..+.+.. ....++++|+.--+++.| +++++++. .+|||+=-+..+.+.+.+... .
T Consensus 141 ~~~~~~~~~~~~--~g~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~-------------~ 205 (221)
T TIGR00734 141 ESLEEVRDFLNS--FDYGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKE-------------M 205 (221)
T ss_pred ccHHHHHHHHHh--cCCEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHH-------------C
Confidence 355666666665 334799999987664555 67888875 689888878888888888777 8
Q ss_pred CccEEEe
Q 008254 123 GAVEFLR 129 (572)
Q Consensus 123 GA~dYL~ 129 (572)
||++.++
T Consensus 206 Ga~~viv 212 (221)
T TIGR00734 206 GVSAVLV 212 (221)
T ss_pred CCCEEEE
Confidence 9998876
No 245
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=45.80 E-value=2.4e+02 Score=30.31 Aligned_cols=144 Identities=14% Similarity=0.101 Sum_probs=80.8
Q ss_pred CCccEEEEEeCC----HHHHHHHHHHHHhCCCEEEEEC--------CH---HHHHHHhhcCCCCeeEEEEeCCCCCCCCh
Q 008254 15 PKGLRVLLLDQD----SSAAAELKFKLEAMDYIVSTFY--------NE---NEALSAFSDKPENFHVAIVEVTTSNTDGS 79 (572)
Q Consensus 15 p~~lRVLVVDDD----~~~~~~L~~lL~~~gy~V~ta~--------~a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG 79 (572)
..+-+|||.--. ...+..|...|+..|+.|..+. .. .++++.+.+ ..+|+|++= +. .+
T Consensus 140 ~~g~~vli~~~~~~~~~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~l~~--~~~d~v~Ft---S~--st 212 (381)
T PRK07239 140 VAGKRIAVQLHGATDEWEPLPEFLEALRAAGAEVVPVPVYRWVPPPDPGPLDRLVDAIAS--RGLDAVTFT---SA--PA 212 (381)
T ss_pred CCCCEEEEEcCCCccccCchHHHHHHHHHCCCEEEEeCcEEEcCCCChhHHHHHHHHHHc--CCccEEEEc---CH--HH
Confidence 356788886322 0125678889999887665211 11 345677777 678988862 22 23
Q ss_pred HH-HHHHh--------------cCCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHH
Q 008254 80 FK-FLETA--------------KDLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHV 144 (572)
Q Consensus 80 ~~-lLe~I--------------rdlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~V 144 (572)
.+ |++.+ ..+.|+.+.. .+...+-+ .|...++.+..+.+.|..++...
T Consensus 213 v~~f~~~l~~~~~~~~~~~~~~~~~~i~aIGp----~Ta~al~~-------------~G~~~~vp~~~t~~~Lv~~i~~~ 275 (381)
T PRK07239 213 VAALLERAREMGLLDQLLAALRTDVLAACVGP----VTAAPLVR-------------AGVPTSAPERMRLGALARHITEE 275 (381)
T ss_pred HHHHHHHHHHcCChHHHHHhhccCCEEEEECH----HHHHHHHH-------------cCCCccCCCCCCHHHHHHHHHHH
Confidence 22 22222 1344455543 22222223 66544567777889998888665
Q ss_pred HHHHHhc----CCC------------cccCCCChhHHHHHHHHHhcchhhhhhc
Q 008254 145 VHKAFNA----GGS------------ALSDSLKPVKESVVSMLHLKLENGESKN 182 (572)
Q Consensus 145 lrr~~~~----~~~------------~~~~sLt~RE~eVL~ll~~~len~e~~~ 182 (572)
+...... ..- ...-.||++|.++|.++......-.+..
T Consensus 276 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~Lt~~E~~lL~~L~~~~~~vvsr~ 329 (381)
T PRK07239 276 LPLRRARTLRAAGHVLEIRGHAVVVDGEVKPLSPAPMALLRALAARPGRVVSRE 329 (381)
T ss_pred hhhhcCceEEECCEEEECCCCEEEECCEEEEcCHHHHHHHHHHHhCCCceEeHH
Confidence 5433210 000 0023599999999999887665544443
No 246
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=45.48 E-value=1.4e+02 Score=29.32 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=49.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCEEEEE----C--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAM--DYIVSTF----Y--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~--gy~V~ta----~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir 87 (572)
.+.+|.++...+.+.+.+...|++. +.+|..+ . ..++.++.+.+ ..+|+|++-+.+|. .. .++.+.+
T Consensus 47 ~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~--s~~dil~VglG~Pk-QE--~~~~~~~ 121 (177)
T TIGR00696 47 EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIAR--SGAGIVFVGLGCPK-QE--IWMRNHR 121 (177)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHH--cCCCEEEEEcCCcH-hH--HHHHHhH
Confidence 4579999999999999999999875 4555533 1 22445677877 78999999999998 43 4455554
No 247
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=45.37 E-value=1.4e+02 Score=28.73 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
.+...+...+++.||.+..+.. . .++++.+.. ..+|.||+....+. ..++++.+. .+|+|++..
T Consensus 16 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiii~~~~~~---~~~~~~~~~~~~ipvV~~~~ 87 (266)
T cd06282 16 ECVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLR--QRVDGLILTVADAA---TSPALDLLDAERVPYVLAYN 87 (266)
T ss_pred HHHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHh--cCCCEEEEecCCCC---chHHHHHHhhCCCCEEEEec
Confidence 3456677777888998876532 2 245556666 67898887543332 234566654 789988854
No 248
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=44.94 E-value=2.3e+02 Score=29.07 Aligned_cols=96 Identities=9% Similarity=0.053 Sum_probs=60.5
Q ss_pred HHHHHHhCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-----CCcEEEEeCCCChHHHHH
Q 008254 33 LKFKLEAMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTIITSNIHCLSTMMK 105 (572)
Q Consensus 33 L~~lL~~~g--y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-----dlPVIiLS~~~d~~~~~k 105 (572)
|+..|+.-. +-+........+++.+.. ..||.|++|+.-.. .+.-++...++ ...+|+=....+...+.+
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~--~g~D~v~iDlEH~~-~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~ 79 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAG--AGFDWLLIDGEHAP-NDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQ 79 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHh--cCCCEEEEeccCCC-CCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHH
Confidence 455565533 223334444567777776 67999999997666 56555554443 344444445556677888
Q ss_pred HHHHHHhhhhccccccCCccEEEeCC-CCHHHHHHHHHHH
Q 008254 106 CIAIMVMNQLFDNNFQLGAVEFLRKP-LSEDKLRNLWQHV 144 (572)
Q Consensus 106 ai~~~~~~~~~~~~~~~GA~dYL~KP-vs~eeL~~~~q~V 144 (572)
++. .||++.++-= -+.+++..+++.+
T Consensus 80 ~Ld-------------~Ga~gIivP~v~s~e~a~~~v~~~ 106 (249)
T TIGR02311 80 LLD-------------IGAQTLLVPMIETAEQAEAAVAAT 106 (249)
T ss_pred HhC-------------CCCCEEEecCcCCHHHHHHHHHHc
Confidence 887 9999987644 4667777655443
No 249
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=44.68 E-value=82 Score=33.65 Aligned_cols=84 Identities=12% Similarity=0.092 Sum_probs=57.5
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC--CEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEE
Q 008254 20 VLLLDQDSSAAAELKFKLEA----MD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~----~g--y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIi 93 (572)
|||-|++-.....+...+++ .. ...+.+.+.+||.+++.. .+|+|++|-.-|+ +--++++.++.-..|.
T Consensus 182 iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~---gaDiI~LDn~s~e--~~~~av~~~~~~~~ie 256 (296)
T PRK09016 182 FLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALKA---GADIIMLDNFTTE--QMREAVKRTNGRALLE 256 (296)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEeCCCChH--HHHHHHHhhcCCeEEE
Confidence 66666665555555555533 22 255689999999999987 6899999965444 4555556555444667
Q ss_pred EeCCCChHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIA 108 (572)
Q Consensus 94 LS~~~d~~~~~kai~ 108 (572)
.|+.-+.+.+.+...
T Consensus 257 aSGGI~~~ni~~yA~ 271 (296)
T PRK09016 257 VSGNVTLETLREFAE 271 (296)
T ss_pred EECCCCHHHHHHHHh
Confidence 788788888877766
No 250
>PF07830 PP2C_C: Protein serine/threonine phosphatase 2C, C-terminal domain; InterPro: IPR012911 Protein phosphatase 2C (PP2C) is involved in regulating cellular responses to stress in various eukaryotes. It consists of two domains: an N-terminal catalytic domain and a C-terminal domain characteristic of mammalian PP2Cs. This domain consists of three antiparallel alpha helices, one of which packs against two corresponding alpha-helices of the N-terminal domain. The C-terminal domain does not seem to play a role in catalysis, but it may provide protein substrate specificity due to the cleft that is created between it and the catalytic domain []. ; GO: 0000287 magnesium ion binding, 0004721 phosphoprotein phosphatase activity, 0030145 manganese ion binding; PDB: 2P8E_A 3FXL_A 3FXO_A 1A6Q_A 3FXK_A 3FXM_A 3FXJ_A.
Probab=44.64 E-value=31 Score=30.15 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhCCCccCCCCCCCCchhHHHHHHHHcCCCCCCCC
Q 008254 522 VIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPPR 565 (572)
Q Consensus 522 ~~d~~i~~~~~~pwlplplglkpps~~~v~~el~~qgi~~~pp~ 565 (572)
.|.+-|.|+|.+-. .-..|++..||..|+..-|++.||.
T Consensus 27 ~l~~rv~ei~~~~~-----~~~~~~l~~V~~~L~~e~ip~LPPG 65 (81)
T PF07830_consen 27 YLEQRVEEIIEKSS-----EEENPDLVYVMRTLASEDIPGLPPG 65 (81)
T ss_dssp HHHHHHHHHT---------------HHHHHHHHHHTT-SS--TT
T ss_pred HHHHHHHHHHHHhc-----ccCCCCHHHHHHHHHhccCCCCcCC
Confidence 34556788998832 3567899999999999999999997
No 251
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=44.59 E-value=83 Score=34.12 Aligned_cols=113 Identities=11% Similarity=0.098 Sum_probs=67.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHH------hCCCEE-E-EECCHHHHHHHhhcCCCCeeEEEEeCCCC-CC---CChHHHHHH
Q 008254 18 LRVLLLDQDSSAAAELKFKLE------AMDYIV-S-TFYNENEALSAFSDKPENFHVAIVEVTTS-NT---DGSFKFLET 85 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~------~~gy~V-~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mP-d~---mdG~~lLe~ 85 (572)
+++=|+.|+......+...++ +.||.| . ++.|...|-++..- .+ ++++=+.-| +. ..--+.++.
T Consensus 168 iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~---g~-~avmPl~~pIGsg~gv~~p~~i~~ 243 (326)
T PRK11840 168 VKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA---GA-VAVMPLGAPIGSGLGIQNPYTIRL 243 (326)
T ss_pred EEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc---CC-EEEeeccccccCCCCCCCHHHHHH
Confidence 455566655554443333333 348988 3 45566666555444 33 333221111 00 011233444
Q ss_pred h---cCCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe-----CCCCHHHHHHHHHHHHHH
Q 008254 86 A---KDLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR-----KPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 86 I---rdlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~-----KPvs~eeL~~~~q~Vlrr 147 (572)
+ .++|||+=.+.+..+.+..|++ +|+++.|+ |--++-.+..+.++++.-
T Consensus 244 ~~e~~~vpVivdAGIg~~sda~~Ame-------------lGadgVL~nSaIa~a~dPv~Ma~A~~~av~a 300 (326)
T PRK11840 244 IVEGATVPVLVDAGVGTASDAAVAME-------------LGCDGVLMNTAIAEAKNPVLMARAMKLAVEA 300 (326)
T ss_pred HHHcCCCcEEEeCCCCCHHHHHHHHH-------------cCCCEEEEcceeccCCCHHHHHHHHHHHHHH
Confidence 3 3799999999999999999999 99999875 556666777777766653
No 252
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=44.43 E-value=2.1e+02 Score=27.97 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=41.7
Q ss_pred eeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHH
Q 008254 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQ 142 (572)
Q Consensus 64 pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q 142 (572)
.|++|+-... + .-|..+++.+. .+|||+ |..+.. .+.+. . .+++..+-+.++|.+.+.
T Consensus 269 adi~v~ps~~-e-~~~~~~~Ea~a~g~PvI~-~~~~~~---~e~~~-------------~--~g~~~~~~~~~~l~~~i~ 327 (365)
T cd03807 269 LDVFVLSSLS-E-GFPNVLLEAMACGLPVVA-TDVGDN---AELVG-------------D--TGFLVPPGDPEALAEAIE 327 (365)
T ss_pred CCEEEeCCcc-c-cCCcHHHHHHhcCCCEEE-cCCCCh---HHHhh-------------c--CCEEeCCCCHHHHHHHHH
Confidence 4777764443 3 34677888886 899876 333321 22222 2 678899999999999888
Q ss_pred HHHHH
Q 008254 143 HVVHK 147 (572)
Q Consensus 143 ~Vlrr 147 (572)
.++..
T Consensus 328 ~l~~~ 332 (365)
T cd03807 328 ALLAD 332 (365)
T ss_pred HHHhC
Confidence 88763
No 253
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.34 E-value=84 Score=33.04 Aligned_cols=92 Identities=12% Similarity=0.083 Sum_probs=59.1
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CCC---EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CC
Q 008254 20 VLLLDQDSSAAAELKFKLEA----MDY---IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DL 89 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~----~gy---~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dl 89 (572)
|||-|++-.....+...+++ ..+ ..+.+.+.+||+.++.. .+|+|.+|=.-+. +--+.++.++ .-
T Consensus 155 vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~---GaDiI~LDn~~~e--~l~~~v~~~~~~~~~ 229 (273)
T PRK05848 155 LMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA---GADIVMCDNMSVE--EIKEVVAYRNANYPH 229 (273)
T ss_pred hCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhhccCCC
Confidence 66666665555555555543 343 34488999999999976 6899998753222 2233333333 12
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
..|..|+.-+.+.+.+... .|++.+.+
T Consensus 230 ~~ieAsGgIt~~ni~~ya~-------------~GvD~Isv 256 (273)
T PRK05848 230 VLLEASGNITLENINAYAK-------------SGVDAISS 256 (273)
T ss_pred eEEEEECCCCHHHHHHHHH-------------cCCCEEEe
Confidence 3566787778899988888 89876643
No 254
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=44.29 E-value=1.2e+02 Score=30.49 Aligned_cols=65 Identities=12% Similarity=0.200 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---CHH---HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTFY---NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~---~a~---EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
.+...+...+++.||.+..+. +.+ +.++.+.. ..+|.+|+.-...+ ...+.++.+. .+|+|++..
T Consensus 43 ~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~--~~~dgiii~~~~~~--~~~~~l~~~~~~~ipvV~~~~ 115 (295)
T PRK10653 43 SLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTV--RGTKILLINPTDSD--AVGNAVKMANQANIPVITLDR 115 (295)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHH--cCCCEEEEcCCChH--HHHHHHHHHHHCCCCEEEEcc
Confidence 345566777778899887653 233 33444555 57887776321111 1124555553 789998854
No 255
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.25 E-value=1.3e+02 Score=29.62 Aligned_cols=63 Identities=13% Similarity=0.187 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCCh-HHHHHHhc--CCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK--DLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG-~~lLe~Ir--dlPVIiLS~ 96 (572)
+...+...+++.||.+..+.. . .+.++.+.. ..+|.||+-- .+ .+. .++++.++ .+|||++-.
T Consensus 17 ~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~--~~~Dgiii~~--~~-~~~~~~~i~~~~~~~iPvV~~~~ 88 (282)
T cd06318 17 LTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLT--RGVNVLIINP--VD-PEGLVPAVAAAKAAGVPVVVVDS 88 (282)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH--cCCCEEEEec--CC-ccchHHHHHHHHHCCCCEEEecC
Confidence 455667777788998876542 2 246666666 6789888743 22 222 35666654 789998854
No 256
>TIGR03586 PseI pseudaminic acid synthase.
Probab=44.20 E-value=1.1e+02 Score=32.99 Aligned_cols=76 Identities=9% Similarity=0.139 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCCCChHHHHH
Q 008254 28 SAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIHCLSTMMK 105 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~~d~~~~~k 105 (572)
.....|....++.|..+.+.--..+.++++.+ ...+ +.=+.-.+ +.-+.||+.+. ..|||+=|+-...+.+..
T Consensus 77 e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~--~~v~--~~KI~S~~-~~n~~LL~~va~~gkPvilstG~~t~~Ei~~ 151 (327)
T TIGR03586 77 EWHKELFERAKELGLTIFSSPFDETAVDFLES--LDVP--AYKIASFE-ITDLPLIRYVAKTGKPIIMSTGIATLEEIQE 151 (327)
T ss_pred HHHHHHHHHHHHhCCcEEEccCCHHHHHHHHH--cCCC--EEEECCcc-ccCHHHHHHHHhcCCcEEEECCCCCHHHHHH
Confidence 34455666677778887766656667788877 3344 45555566 67799999996 899999999999999999
Q ss_pred HHH
Q 008254 106 CIA 108 (572)
Q Consensus 106 ai~ 108 (572)
|+.
T Consensus 152 Av~ 154 (327)
T TIGR03586 152 AVE 154 (327)
T ss_pred HHH
Confidence 987
No 257
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=43.92 E-value=1e+02 Score=31.84 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=47.1
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHhhcC---CCCeeEEEEeCC
Q 008254 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDK---PENFHVAIVEVT 72 (572)
Q Consensus 13 ~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~-ta~~a~EAL~~L~e~---~~~pDLVIvDv~ 72 (572)
.+|.+-+|.-+|-++...+.-+..++..|+ .|. ...++.+.|..+... ...||+|++|..
T Consensus 100 al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 100 ALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred hCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 345567999999999999999999999886 344 667888888876431 147999999986
No 258
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=43.90 E-value=2.4e+02 Score=28.87 Aligned_cols=76 Identities=14% Similarity=0.078 Sum_probs=47.1
Q ss_pred ccEEEEEeCCH----HHHHHHHHHHHhCCCEEEE---E----CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHH
Q 008254 17 GLRVLLLDQDS----SAAAELKFKLEAMDYIVST---F----YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLET 85 (572)
Q Consensus 17 ~lRVLVVDDD~----~~~~~L~~lL~~~gy~V~t---a----~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~ 85 (572)
.-+|.+|.++. .....+...+++.|.+|+. + .+-...+..++. ..+|+||+... . .+...+++.
T Consensus 141 ~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~--~~~d~i~~~~~--~-~~~~~~~~~ 215 (345)
T cd06338 141 PKKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKA--AGPDAVVVAGH--F-PDAVLLVRQ 215 (345)
T ss_pred CceEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHh--cCCCEEEECCc--c-hhHHHHHHH
Confidence 34566555554 2445566777778887752 1 344556777776 67899987543 3 356777777
Q ss_pred hc----CCcEEEEeCC
Q 008254 86 AK----DLPTIITSNI 97 (572)
Q Consensus 86 Ir----dlPVIiLS~~ 97 (572)
++ +.++++++..
T Consensus 216 ~~~~g~~~~~~~~~~~ 231 (345)
T cd06338 216 MKELGYNPKALYMTVG 231 (345)
T ss_pred HHHcCCCCCEEEEecC
Confidence 75 4566655543
No 259
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=43.77 E-value=1.1e+02 Score=31.05 Aligned_cols=66 Identities=11% Similarity=0.081 Sum_probs=51.0
Q ss_pred CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh-cCCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEE
Q 008254 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA-KDLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEF 127 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I-rdlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dY 127 (572)
+..++++.+.+ ..-.++++|+.--+++.|++-+.+. .++|||.--+-.+.+.+.++.+ .|+++.
T Consensus 144 ~~~~~~~~~~~--~~~~ii~t~i~~dGt~~G~d~l~~~~~~~pviasGGv~~~~Dl~~l~~-------------~g~~gv 208 (228)
T PRK04128 144 KVEDAYEMLKN--YVNRFIYTSIERDGTLTGIEEIERFWGDEEFIYAGGVSSAEDVKKLAE-------------IGFSGV 208 (228)
T ss_pred CHHHHHHHHHH--HhCEEEEEeccchhcccCHHHHHHhcCCCCEEEECCCCCHHHHHHHHH-------------CCCCEE
Confidence 45677777766 3337999999888877888844333 5899999888899999988888 898887
Q ss_pred Ee
Q 008254 128 LR 129 (572)
Q Consensus 128 L~ 129 (572)
++
T Consensus 209 iv 210 (228)
T PRK04128 209 II 210 (228)
T ss_pred EE
Confidence 66
No 260
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=43.69 E-value=3e+02 Score=28.17 Aligned_cols=75 Identities=12% Similarity=0.174 Sum_probs=49.4
Q ss_pred CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEE
Q 008254 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEF 127 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dY 127 (572)
+..+....+.. .|++++=- ..+ .-|..+++.+. .+|||+ |.... ..+.+. .+-.++
T Consensus 292 ~~~~~~~~~~~----adi~l~ps-~~e-~~~~~l~Ea~a~G~Pvi~-s~~~~---~~e~i~-------------~~~~g~ 348 (398)
T cd03800 292 SREDLPALYRA----ADVFVNPA-LYE-PFGLTALEAMACGLPVVA-TAVGG---PRDIVV-------------DGVTGL 348 (398)
T ss_pred CHHHHHHHHHh----CCEEEecc-ccc-ccCcHHHHHHhcCCCEEE-CCCCC---HHHHcc-------------CCCCeE
Confidence 34555556655 57776532 223 34667888876 899875 33333 223344 667789
Q ss_pred EeCCCCHHHHHHHHHHHHH
Q 008254 128 LRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 128 L~KPvs~eeL~~~~q~Vlr 146 (572)
+..+.+.++|.+.|..++.
T Consensus 349 ~~~~~~~~~l~~~i~~l~~ 367 (398)
T cd03800 349 LVDPRDPEALAAALRRLLT 367 (398)
T ss_pred EeCCCCHHHHHHHHHHHHh
Confidence 9999999999999988775
No 261
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=43.57 E-value=3e+02 Score=28.68 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=19.1
Q ss_pred ccEEEeCCCCHHHHHHHHHHHHH
Q 008254 124 AVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 124 A~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
+.+++.+..+.++|.+.+..++.
T Consensus 318 ~~~~~~~~~~~~~l~~~i~~ll~ 340 (380)
T PRK00025 318 VPELLQEEATPEKLARALLPLLA 340 (380)
T ss_pred chhhcCCCCCHHHHHHHHHHHhc
Confidence 56788889999999998887775
No 262
>PLN02335 anthranilate synthase
Probab=43.20 E-value=26 Score=35.21 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=34.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIv 69 (572)
.+|||||....+-..|.+.|++.|+.+.++......++.+.. ..||.||+
T Consensus 19 ~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~--~~~d~iVi 68 (222)
T PLN02335 19 GPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKR--KNPRGVLI 68 (222)
T ss_pred CcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHh--cCCCEEEE
Confidence 489999987888888999999999877765532111232333 45776665
No 263
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=43.15 E-value=1.1e+02 Score=30.84 Aligned_cols=69 Identities=10% Similarity=0.150 Sum_probs=50.7
Q ss_pred ECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChH--HHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhcccccc
Q 008254 47 FYNENEALSAFSDKPENFHVAIVEVTTSNTDGSF--KFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQ 121 (572)
Q Consensus 47 a~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~--~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~ 121 (572)
.-+..++++.+.+. ..-.++++|+.--+++.|+ ++++.++ ++|||.--+-.+.+.+.++..
T Consensus 146 ~~~~~~~~~~~~~~-g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~------------- 211 (229)
T PF00977_consen 146 GIDLEEFAKRLEEL-GAGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKK------------- 211 (229)
T ss_dssp EEEHHHHHHHHHHT-T-SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHH-------------
T ss_pred CcCHHHHHHHHHhc-CCcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHH-------------
Confidence 34678888887772 3347999999877766664 4566664 899998888889999988888
Q ss_pred CCccEEEe
Q 008254 122 LGAVEFLR 129 (572)
Q Consensus 122 ~GA~dYL~ 129 (572)
.|+++.++
T Consensus 212 ~G~~gviv 219 (229)
T PF00977_consen 212 AGIDGVIV 219 (229)
T ss_dssp TTECEEEE
T ss_pred CCCcEEEE
Confidence 99988876
No 264
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=43.02 E-value=1.1e+02 Score=30.89 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=46.3
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHhhcC--CCCeeEEEEeCCC
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDK--PENFHVAIVEVTT 73 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~-ta~~a~EAL~~L~e~--~~~pDLVIvDv~m 73 (572)
++..-+|.-+|-++...+..+..++..|+ .|. ...++.+.|..+... ...||+|++|..-
T Consensus 90 ~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k 154 (234)
T PLN02781 90 LPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADK 154 (234)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCH
Confidence 44455999999999999999999999876 343 567888888776432 2479999999753
No 265
>PRK04457 spermidine synthase; Provisional
Probab=42.88 E-value=3.2e+02 Score=28.11 Aligned_cols=53 Identities=11% Similarity=0.056 Sum_probs=39.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CEEE-EECCHHHHHHHhhcCCCCeeEEEEeCC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMD--YIVS-TFYNENEALSAFSDKPENFHVAIVEVT 72 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~g--y~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~ 72 (572)
..+|.+||=|+.+.+..+..+...+ -++. ...++.+.+.... ..||+||+|..
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~---~~yD~I~~D~~ 145 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHR---HSTDVILVDGF 145 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCC---CCCCEEEEeCC
Confidence 4689999999999999988876432 3443 5578777776432 47999999963
No 266
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=42.86 E-value=34 Score=39.07 Aligned_cols=76 Identities=18% Similarity=0.183 Sum_probs=48.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCH---HHHHHHhhcCCCCeeEEEEeCC--CCCCCC--hHHHHHHhc-C
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNE---NEALSAFSDKPENFHVAIVEVT--TSNTDG--SFKFLETAK-D 88 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a---~EAL~~L~e~~~~pDLVIvDv~--mPd~md--G~~lLe~Ir-d 88 (572)
+++|||||....+--.|.++|+.+|+.+..+.+. ...++.+.. ..+|.||+-=. .|. .. -.++++.+. .
T Consensus 1 ~~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~--~~~~~IIlSpGPg~p~-d~~~~~~i~~~~~~~ 77 (531)
T PRK09522 1 MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLAT--MSNPVLMLSPGPGVPS-EAGCMPELLTRLRGK 77 (531)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHh--cCcCEEEEcCCCCChh-hCCCCHHHHHHHhcC
Confidence 3689999999999999999999999887766542 223444444 35666665321 111 01 134555443 7
Q ss_pred CcEEEEe
Q 008254 89 LPTIITS 95 (572)
Q Consensus 89 lPVIiLS 95 (572)
+||+-+.
T Consensus 78 iPILGIC 84 (531)
T PRK09522 78 LPIIGIC 84 (531)
T ss_pred CCEEEEc
Confidence 8887664
No 267
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=42.40 E-value=2.9e+02 Score=30.60 Aligned_cols=75 Identities=13% Similarity=0.181 Sum_probs=45.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC-EEE-------------------EECCHHHHHHHhhcCCCCeeEEEEeCCC
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDY-IVS-------------------TFYNENEALSAFSDKPENFHVAIVEVTT 73 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy-~V~-------------------ta~~a~EAL~~L~e~~~~pDLVIvDv~m 73 (572)
|.+.|+||||..-.........+.+.-.+ .|. ...|.++.++.+++ ..+|+||....-
T Consensus 1 ~~~~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~~~~~~~~~~~~~d~~~l~~~a~~--~~iD~Vv~g~E~ 78 (426)
T PRK13789 1 MQVKLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFLKS--NPFDLIVVGPED 78 (426)
T ss_pred CCCCcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhccccccccCcCcCCHHHHHHHHHH--cCCCEEEECCch
Confidence 34568999999988877766666554212 111 12466666777777 789999986544
Q ss_pred CCCCChH-HHHHHhcCCcEE
Q 008254 74 SNTDGSF-KFLETAKDLPTI 92 (572)
Q Consensus 74 Pd~mdG~-~lLe~IrdlPVI 92 (572)
+- ..|+ +.++.+ .+|++
T Consensus 79 ~l-~~glad~~~~~-Gip~~ 96 (426)
T PRK13789 79 PL-VAGFADWAAEL-GIPCF 96 (426)
T ss_pred HH-HHHHHHHHHHc-CCCcC
Confidence 44 3333 333332 46644
No 268
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.35 E-value=98 Score=30.23 Aligned_cols=67 Identities=12% Similarity=0.171 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---C---HHHHHHHhhcCCCCeeEEEEeCCCCCCCC-hHHHHHHhc--CCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTFY---N---ENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~---~---a~EAL~~L~e~~~~pDLVIvDv~mPd~md-G~~lLe~Ir--dlPVIiLS~ 96 (572)
.+...+...+++.||.+..+. + ..+.++.+.. ..+|-+|+.-..++... -.+.++.+. .+|||++-.
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i~~ 91 (273)
T cd06292 16 AFAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLA--RGVRGVVFISSLHADTHADHSHYERLAERGLPVVLVNG 91 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHH--cCCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEEcC
Confidence 455677888888899876543 2 2256777777 67998887543333011 123455553 799998854
No 269
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=42.09 E-value=4e+02 Score=27.34 Aligned_cols=106 Identities=17% Similarity=0.128 Sum_probs=62.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCC--CEEEEE-C-CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCc
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMD--YIVSTF-Y-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP 90 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~g--y~V~ta-~-~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlP 90 (572)
+++||.||.--..........+...+ ++++.. . +.+.|-....+ ..+.-+. .+--++|+.-. |+-
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~--~~~~~~~--------~~~~~ll~~~~iD~V 71 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEE--FGIAKAY--------TDLEELLADPDIDAV 71 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHH--cCCCccc--------CCHHHHhcCCCCCEE
Confidence 46789999877666665666666653 355533 3 44444444444 2222111 12233333322 555
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCC--CHHHHHHHHHHH
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDKLRNLWQHV 144 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~eeL~~~~q~V 144 (572)
+|.+......+.+++|++ +|..=|+-||+ +.+|...+++.+
T Consensus 72 ~Iatp~~~H~e~~~~AL~-------------aGkhVl~EKPla~t~~ea~~l~~~a 114 (342)
T COG0673 72 YIATPNALHAELALAALE-------------AGKHVLCEKPLALTLEEAEELVELA 114 (342)
T ss_pred EEcCCChhhHHHHHHHHh-------------cCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 555555667788899998 99999999998 457777544433
No 270
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=41.86 E-value=4.5e+02 Score=31.94 Aligned_cols=108 Identities=11% Similarity=0.113 Sum_probs=65.6
Q ss_pred ccEEEEEeCCH--------H---HHHHHHHHHHhCCC--EEEEEC---C---HHHHHHHhhcCCCCeeEEEEeCCCCCCC
Q 008254 17 GLRVLLLDQDS--------S---AAAELKFKLEAMDY--IVSTFY---N---ENEALSAFSDKPENFHVAIVEVTTSNTD 77 (572)
Q Consensus 17 ~lRVLVVDDD~--------~---~~~~L~~lL~~~gy--~V~ta~---~---a~EAL~~L~e~~~~pDLVIvDv~mPd~m 77 (572)
..+++||.+.. . ..+.|..+..+.|. .|.... + ..+..+.+.. ..|++++=- ... .
T Consensus 581 ~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd---~adVfV~PS-~~E-p 655 (784)
T TIGR02470 581 LVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIAD---TKGIFVQPA-LYE-A 655 (784)
T ss_pred CeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhhc---cCcEEEECC-ccc-C
Confidence 35667766532 1 33455666666552 444222 2 2233333332 346666532 334 3
Q ss_pred ChHHHHHHhc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 78 GSFKFLETAK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 78 dG~~lLe~Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
-|+-+++.+. .+|||. |..+... +.+. .|..+|++.|-+.++|.+++..++.
T Consensus 656 FGLvvLEAMAcGlPVVA-T~~GG~~---EiV~-------------dg~tGfLVdp~D~eaLA~aL~~ll~ 708 (784)
T TIGR02470 656 FGLTVLEAMTCGLPTFA-TRFGGPL---EIIQ-------------DGVSGFHIDPYHGEEAAEKIVDFFE 708 (784)
T ss_pred CCHHHHHHHHcCCCEEE-cCCCCHH---HHhc-------------CCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 5888888886 899986 4444433 3344 7999999999999999999888764
No 271
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=41.39 E-value=72 Score=35.56 Aligned_cols=62 Identities=19% Similarity=0.305 Sum_probs=47.3
Q ss_pred cCCCCccEEEEEeCCHHHHHHHH--HHHHhCC------CEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCC
Q 008254 12 KDFPKGLRVLLLDQDSSAAAELK--FKLEAMD------YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (572)
Q Consensus 12 ~~~p~~lRVLVVDDD~~~~~~L~--~lL~~~g------y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd 75 (572)
-.+|.-..|.+||=|+...+.-+ ..|+..+ -+|..+. ++|...++..++.||.||+|+.-|+
T Consensus 308 lkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~--dDAf~wlr~a~~~fD~vIVDl~DP~ 377 (508)
T COG4262 308 LKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN--DDAFQWLRTAADMFDVVIVDLPDPS 377 (508)
T ss_pred HhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe--ccHHHHHHhhcccccEEEEeCCCCC
Confidence 45787789999999999988877 6666531 2666554 3677777776678999999998887
No 272
>PRK10188 DNA-binding transcriptional activator SdiA; Provisional
Probab=41.18 E-value=40 Score=34.24 Aligned_cols=36 Identities=8% Similarity=-0.076 Sum_probs=30.9
Q ss_pred cCCCChhHHHHHHHHHhcchhhhhhccccccccccc
Q 008254 157 SDSLKPVKESVVSMLHLKLENGESKNEKSENTEYVL 192 (572)
Q Consensus 157 ~~sLt~RE~eVL~ll~~~len~e~~~e~s~~~e~v~ 192 (572)
...||+||++||+++..|..+.|......++..+|.
T Consensus 177 ~~~LT~rE~evl~~~a~G~t~~eIa~~l~is~~TV~ 212 (240)
T PRK10188 177 EMNFSKREKEILKWTAEGKTSAEIAMILSISENTVN 212 (240)
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHH
Confidence 357999999999999999999999887777766664
No 273
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=41.14 E-value=1.4e+02 Score=28.87 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~---a~---EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
.+...+...+++.||.+..+.+ .+ +.++.+.+ ..+|.||+--.. .....++.+. .+|+|++-.
T Consensus 16 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiii~~~~----~~~~~~~~l~~~~iPvv~~~~ 86 (268)
T cd06273 16 RVIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLE--RGVDGLALIGLD----HSPALLDLLARRGVPYVATWN 86 (268)
T ss_pred HHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHh--cCCCEEEEeCCC----CCHHHHHHHHhCCCCEEEEcC
Confidence 3456677778888998876543 23 45556666 568877763221 1224445553 799998743
No 274
>PLN02476 O-methyltransferase
Probab=41.07 E-value=1.1e+02 Score=32.39 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=46.5
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHhhcC--CCCeeEEEEeCC
Q 008254 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDYI--VS-TFYNENEALSAFSDK--PENFHVAIVEVT 72 (572)
Q Consensus 13 ~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~--V~-ta~~a~EAL~~L~e~--~~~pDLVIvDv~ 72 (572)
-++..-+|.-+|-++...+..+..++..|+. |. ...++.+.|..+... ...||+|++|..
T Consensus 139 al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 139 VLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 3455567999999999999999999999873 44 667888888766321 147999999975
No 275
>PRK05993 short chain dehydrogenase; Provisional
Probab=40.66 E-value=1.3e+02 Score=30.20 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=42.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTS 74 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mP 74 (572)
+..|||..-..-+-..+...|.+.|+.|+.+....+.++.+.. ..++++.+|+.-+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~--~~~~~~~~Dl~d~ 59 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA--EGLEAFQLDYAEP 59 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--CCceEEEccCCCH
Confidence 4579999998889999999998899998866655666666666 4567777777533
No 276
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=40.66 E-value=25 Score=37.63 Aligned_cols=56 Identities=20% Similarity=0.319 Sum_probs=33.6
Q ss_pred cCCCCccEEEEEeCCHHHHHHHHHHHHhCCCE-EE-EECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 12 KDFPKGLRVLLLDQDSSAAAELKFKLEAMDYI-VS-TFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 12 ~~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~-V~-ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
..||+ +|+|||=|..+...+++..++.||. +. ..-+...++-.--. ..||++|+|-
T Consensus 172 t~mpk--~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~--~kFDvfiTDP 229 (354)
T COG1568 172 TGMPK--RIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLK--RKFDVFITDP 229 (354)
T ss_pred cCCCc--eEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHH--hhCCeeecCc
Confidence 44554 6777777777777777777777775 43 23344444322222 3578877763
No 277
>PLN02366 spermidine synthase
Probab=40.66 E-value=1.3e+02 Score=31.99 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=41.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC--C---CEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCC
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAM--D---YIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~--g---y~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd 75 (572)
|...+|.+||=|+.+.+..++.+... + -+|. ...|+.+.++.... ..||+||+|..-|.
T Consensus 113 ~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~--~~yDvIi~D~~dp~ 177 (308)
T PLN02366 113 SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPE--GTYDAIIVDSSDPV 177 (308)
T ss_pred CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccC--CCCCEEEEcCCCCC
Confidence 44568999999998888888877542 1 2444 56777777765433 57999999986654
No 278
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=40.64 E-value=3.4e+02 Score=26.67 Aligned_cols=77 Identities=10% Similarity=0.124 Sum_probs=45.8
Q ss_pred CHHHHHHHhhcCCCCeeEEEEeCCCCC---CCChHHHHHHhc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCc
Q 008254 49 NENEALSAFSDKPENFHVAIVEVTTSN---TDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGA 124 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~pDLVIvDv~mPd---~mdG~~lLe~Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA 124 (572)
+.++..+.+.. .|++|+=..... ..-+..+++.+. .+|||........+ .+. .|-
T Consensus 284 ~~~~~~~~~~~----~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~~-------------~~~ 342 (394)
T cd03794 284 PKEELPELLAA----ADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LVE-------------EAG 342 (394)
T ss_pred ChHHHHHHHHh----hCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hhc-------------cCC
Confidence 34555555555 466665333221 011345677775 78887654433222 122 456
Q ss_pred cEEEeCCCCHHHHHHHHHHHHH
Q 008254 125 VEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 125 ~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
.+++..+-+.++|.+.+..++.
T Consensus 343 ~g~~~~~~~~~~l~~~i~~~~~ 364 (394)
T cd03794 343 AGLVVPPGDPEALAAAILELLD 364 (394)
T ss_pred cceEeCCCCHHHHHHHHHHHHh
Confidence 7889999999999998888873
No 279
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=40.47 E-value=2.3e+02 Score=25.82 Aligned_cols=54 Identities=20% Similarity=0.178 Sum_probs=38.0
Q ss_pred CCeeEEEEeCCCCCCCCh-------HHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 62 ENFHVAIVEVTTSNTDGS-------FKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 62 ~~pDLVIvDv~mPd~mdG-------~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
...|.+.++-..+. ..+ ...+..++ .+||+...+....+.+.+++. .||+.+.+
T Consensus 135 ~g~d~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~-------------~Gad~v~v 198 (200)
T cd04722 135 AGVDEVGLGNGGGG-GGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALA-------------LGADGVIV 198 (200)
T ss_pred cCCCEEEEcCCcCC-CCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHH-------------hCCCEEEe
Confidence 45788888776664 222 13333333 799999888887789999998 89988764
No 280
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=40.24 E-value=1.5e+02 Score=29.06 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEeCCCCCCC--ChHHHHHHhc--CCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTD--GSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~------a~EAL~~L~e~~~~pDLVIvDv~mPd~m--dG~~lLe~Ir--dlPVIiLS~~ 97 (572)
.+...+...+++.||.+..+.. ..++++.+.. ..+|.+|+--..++ . ....+++.+. ++|||++-..
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgii~~~~~~~-~~~~~~~~~~~~~~~~ipvV~~~~~ 92 (273)
T cd01541 16 SIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLS--QGIDGLIIEPTKSA-LPNPNIDLYLKLEKLGIPYVFINAS 92 (273)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEeccccc-cccccHHHHHHHHHCCCCEEEEecC
Confidence 4566777888888998876542 2356667777 67999987432221 1 1224555553 7999988543
No 281
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=39.93 E-value=1.5e+02 Score=28.69 Aligned_cols=66 Identities=9% Similarity=0.094 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEeCC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNI 97 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS~~ 97 (572)
+...++..+++.||.+..+.+ . .++++.+.. ..+|-||+...-.+ ...+..+.....+|||++...
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~-~~~~~~l~~~~~ipvV~i~~~ 88 (269)
T cd06275 17 VVRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQ--KRVDGLLVMCSEYD-QPLLAMLERYRHIPMVVMDWG 88 (269)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHH--cCCCEEEEecCCCC-hHHHHHHHhcCCCCEEEEecc
Confidence 456677778888998775432 2 245666666 67887777432222 122233322348999988653
No 282
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=39.92 E-value=5.5e+02 Score=28.26 Aligned_cols=100 Identities=10% Similarity=0.098 Sum_probs=60.2
Q ss_pred HHHHHHHHhCCCEEE----EECCHHHHHHHhhcCCCCeeEEEEeCCC----CCCCChHHHHHHhc---CCcEEEEeCCCC
Q 008254 31 AELKFKLEAMDYIVS----TFYNENEALSAFSDKPENFHVAIVEVTT----SNTDGSFKFLETAK---DLPTIITSNIHC 99 (572)
Q Consensus 31 ~~L~~lL~~~gy~V~----ta~~a~EAL~~L~e~~~~pDLVIvDv~m----Pd~mdG~~lLe~Ir---dlPVIiLS~~~d 99 (572)
..+....++.|..+. ++.+..+.++.+.+ ...|.|.+.... .. ..+++.+++++ ++||++.-+. .
T Consensus 97 ~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~--~GaD~I~~~pg~~~~~~~-~~~~~~l~~l~~~~~iPI~a~GGI-~ 172 (430)
T PRK07028 97 EDAVRAARKYGVRLMADLINVPDPVKRAVELEE--LGVDYINVHVGIDQQMLG-KDPLELLKEVSEEVSIPIAVAGGL-D 172 (430)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHh--cCCCEEEEEeccchhhcC-CChHHHHHHHHhhCCCcEEEECCC-C
Confidence 334445555665444 33344444444444 467888765321 12 35677888876 6888877665 5
Q ss_pred hHHHHHHHHHHHhhhhccccccCCccEE-----EeCCCCHHHHHHHHHHHHHH
Q 008254 100 LSTMMKCIAIMVMNQLFDNNFQLGAVEF-----LRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 100 ~~~~~kai~~~~~~~~~~~~~~~GA~dY-----L~KPvs~eeL~~~~q~Vlrr 147 (572)
.+.+..++. .||+.+ |.+.-+..+....++..+++
T Consensus 173 ~~n~~~~l~-------------aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~ 212 (430)
T PRK07028 173 AETAAKAVA-------------AGADIVIVGGNIIKSADVTEAARKIREAIDS 212 (430)
T ss_pred HHHHHHHHH-------------cCCCEEEEChHHcCCCCHHHHHHHHHHHHhc
Confidence 677888888 899865 44555666666666665554
No 283
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.89 E-value=1.6e+02 Score=28.84 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~------a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
.+...+...+++.||.+....+ ..++++.+.+ ..+|-||+--... +.-.+++.++ ++|||++-..
T Consensus 16 ~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgii~~~~~~---~~~~~~~~~~~~~ipvV~i~~~ 88 (269)
T cd06281 16 QLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQ--RRMDGIIIAPGDE---RDPELVDALASLDLPIVLLDRD 88 (269)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHH--cCCCEEEEecCCC---CcHHHHHHHHhCCCCEEEEecc
Confidence 4566777888888998775432 2356667777 6788888743222 2334555553 7899998653
No 284
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=39.83 E-value=3.3e+02 Score=28.11 Aligned_cols=102 Identities=13% Similarity=0.162 Sum_probs=58.1
Q ss_pred ccEEEEEeC-CHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEeCCCCCC-----CChHHHHHHhc
Q 008254 17 GLRVLLLDQ-DSSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNT-----DGSFKFLETAK 87 (572)
Q Consensus 17 ~lRVLVVDD-D~~~~~~L~~lL~~~gy~V~---ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~-----mdG~~lLe~Ir 87 (572)
|...+++-| -......+...+++.|.... .-++..+-++.+.+.-..|.++++=....+. .+-.+++++++
T Consensus 115 GvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr 194 (256)
T TIGR00262 115 GVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLK 194 (256)
T ss_pred CCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHH
Confidence 344444444 44455666677777776432 2223344444443322346666652111210 12355666666
Q ss_pred ---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCC
Q 008254 88 ---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKP 131 (572)
Q Consensus 88 ---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KP 131 (572)
++||++=-+..+.+.+.+++. .||+++++-.
T Consensus 195 ~~~~~pi~vgfGI~~~e~~~~~~~-------------~GADgvVvGS 228 (256)
T TIGR00262 195 AYSAKPVLVGFGISKPEQVKQAID-------------AGADGVIVGS 228 (256)
T ss_pred hhcCCCEEEeCCCCCHHHHHHHHH-------------cCCCEEEECH
Confidence 688776555666889999888 9999999864
No 285
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=39.78 E-value=69 Score=34.69 Aligned_cols=45 Identities=22% Similarity=0.222 Sum_probs=35.0
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCc--cEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 88 DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGA--VEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA--~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
++|.|+||+--+.+...+.+. .|.++|| .+||-- +.+|...+.-.
T Consensus 241 ~~P~i~LSaGV~~~~F~~~l~---------~A~~aGa~fsGvL~G-------RAtW~~~v~~~ 287 (325)
T TIGR01232 241 HLPYIYLSAGVSAELFQETLK---------FAHEAGAKFNGVLCG-------RATWSGAVQVY 287 (325)
T ss_pred CCCEEEEcCCCCHHHHHHHHH---------HHHHcCCCcceEEee-------hhhhHhhhhhh
Confidence 899999999999888888776 4666899 799974 45666666543
No 286
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.73 E-value=1.1e+02 Score=32.43 Aligned_cols=84 Identities=12% Similarity=0.032 Sum_probs=57.0
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CCC---EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEE
Q 008254 20 VLLLDQDSSAAAELKFKLEA----MDY---IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~----~gy---~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVI 92 (572)
|||-|++-.....+...+++ ..+ ..+.+.+.+||.+++.. .+|+|++|=.-|. +--+.++.++..-+|
T Consensus 167 vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~---gaDiI~LDn~s~e--~l~~av~~~~~~~~l 241 (281)
T PRK06106 167 VLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVDTLDQLEEALEL---GVDAVLLDNMTPD--TLREAVAIVAGRAIT 241 (281)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHc---CCCEEEeCCCCHH--HHHHHHHHhCCCceE
Confidence 66666665555445554443 332 44689999999999976 6899999964443 444555555544457
Q ss_pred EEeCCCChHHHHHHHH
Q 008254 93 ITSNIHCLSTMMKCIA 108 (572)
Q Consensus 93 iLS~~~d~~~~~kai~ 108 (572)
..|+.-+.+.+.+...
T Consensus 242 eaSGGI~~~ni~~yA~ 257 (281)
T PRK06106 242 EASGRITPETAPAIAA 257 (281)
T ss_pred EEECCCCHHHHHHHHh
Confidence 8888888888877776
No 287
>CHL00194 ycf39 Ycf39; Provisional
Probab=39.62 E-value=2e+02 Score=29.65 Aligned_cols=71 Identities=10% Similarity=0.148 Sum_probs=45.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEe
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS 95 (572)
|+|||..-.-.+-..|...|.+.||+|+.+....+....+.. ..+.++..|+.-++ .+.+.+.++-+|+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~--~~v~~v~~Dl~d~~-----~l~~al~g~d~Vi~~ 71 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKE--WGAELVYGDLSLPE-----TLPPSFKGVTAIIDA 71 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhh--cCCEEEECCCCCHH-----HHHHHHCCCCEEEEC
Confidence 479999998888888888888889998865533333343443 35677777765333 333444555555543
No 288
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=39.37 E-value=39 Score=33.77 Aligned_cols=77 Identities=14% Similarity=0.218 Sum_probs=43.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEe-CC-CCCCCCh--HHHHHHhc--CCcE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVE-VT-TSNTDGS--FKFLETAK--DLPT 91 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvD-v~-mPd~mdG--~~lLe~Ir--dlPV 91 (572)
|||||+|........+...|+..|+.+..+......+..+.+....+|.||+- =- .|. .++ .++++.+. ++||
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~-~~~~~~~~i~~~~~~~~Pi 79 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPE-RAGASIDMVRACAAAGTPL 79 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChh-hcchHHHHHHHHHhCCCCE
Confidence 58999999998888999999999987765443221111111100247766652 10 121 112 23455442 6777
Q ss_pred EEEe
Q 008254 92 IITS 95 (572)
Q Consensus 92 IiLS 95 (572)
+-+.
T Consensus 80 LGIC 83 (214)
T PRK07765 80 LGVC 83 (214)
T ss_pred EEEc
Confidence 6654
No 289
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=39.32 E-value=3.7e+02 Score=29.20 Aligned_cols=95 Identities=13% Similarity=0.115 Sum_probs=56.2
Q ss_pred HHHHHHhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeCCCChHHHHHHH
Q 008254 33 LKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCI 107 (572)
Q Consensus 33 L~~lL~~~gy--~V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~~~d~~~~~kai 107 (572)
+..+....++ .|.... ..++....++..-...|++++=-. .. .-|+-++|.+. .+|||.....+. . +.+
T Consensus 306 ~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~-~E-~fg~~~lEAma~G~PvV~s~~gg~-~---eiv 379 (439)
T TIGR02472 306 VLLLIDRYDLYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPAL-TE-PFGLTLLEAAACGLPIVATDDGGP-R---DII 379 (439)
T ss_pred HHHHHHHcCCCceEEecCCCCHHHHHHHHHHHhhcCCEEecccc-cC-CcccHHHHHHHhCCCEEEeCCCCc-H---HHh
Confidence 4444455444 343322 344444444430012377664322 22 24677888876 899986654332 2 233
Q ss_pred HHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 108 AIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 108 ~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
. .|..+|++.|-+.++|.+++..++.
T Consensus 380 ~-------------~~~~G~lv~~~d~~~la~~i~~ll~ 405 (439)
T TIGR02472 380 A-------------NCRNGLLVDVLDLEAIASALEDALS 405 (439)
T ss_pred c-------------CCCcEEEeCCCCHHHHHHHHHHHHh
Confidence 4 6788999999999999998888765
No 290
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=39.28 E-value=2.2e+02 Score=25.65 Aligned_cols=96 Identities=18% Similarity=0.143 Sum_probs=56.3
Q ss_pred EEEEeC-CHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEeC
Q 008254 20 VLLLDQ-DSSAAAELKFKLEAMDYIVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (572)
Q Consensus 20 VLVVDD-D~~~~~~L~~lL~~~gy~V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS~ 96 (572)
|||.+. .+...+.|+. +|+|..+. +.++..+.+.. +|++|+-..-+ -.-++++.+..+.+|...+
T Consensus 1 ili~~~~~~~~~~~l~~-----~~~v~~~~~~~~~~~~~~l~~----~d~ii~~~~~~---~~~~~l~~~~~Lk~I~~~~ 68 (133)
T PF00389_consen 1 ILITDPLPDEEIERLEE-----GFEVEFCDSPSEEELAERLKD----ADAIIVGSGTP---LTAEVLEAAPNLKLISTAG 68 (133)
T ss_dssp EEESSS-SHHHHHHHHH-----TSEEEEESSSSHHHHHHHHTT----ESEEEESTTST---BSHHHHHHHTT-SEEEESS
T ss_pred eEEeccCCHHHHHHHHC-----CceEEEeCCCCHHHHHHHhCC----CeEEEEcCCCC---cCHHHHhccceeEEEEEcc
Confidence 566665 4555555544 77777655 55656666665 89999854331 2467888888999998877
Q ss_pred CCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHH
Q 008254 97 IHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRN 139 (572)
Q Consensus 97 ~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~ 139 (572)
.+-...-.++.. +.|+.=.=......+.+.+
T Consensus 69 ~G~d~id~~~a~------------~~gI~V~n~~g~~~~aVAE 99 (133)
T PF00389_consen 69 AGVDNIDLEAAK------------ERGIPVTNVPGYNAEAVAE 99 (133)
T ss_dssp SSCTTB-HHHHH------------HTTSEEEE-TTTTHHHHHH
T ss_pred cccCcccHHHHh------------hCeEEEEEeCCcCCcchhc
Confidence 654333333333 1666655555555555444
No 291
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=39.27 E-value=1.4e+02 Score=33.02 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=51.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHhhcC-CCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMD-YIVSTFYNENEALSAFSDK-PENFHVAIVEVTTSNTDGSFKFLETAK--DLPTI 92 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~g-y~V~ta~~a~EAL~~L~e~-~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVI 92 (572)
|++|||+.- -.+...+...|.+.+ ++|+.++...+..+.+... ..+...+.+|+. +.-.+.+.|+ ++-|.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~-----d~~al~~li~~~d~VIn 74 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAA-----DVDALVALIKDFDLVIN 74 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEeccc-----ChHHHHHHHhcCCEEEE
Confidence 468888888 455555555555554 8999888776666666441 125778888874 3333444444 44444
Q ss_pred EEeCCCChHHHHHHHH
Q 008254 93 ITSNIHCLSTMMKCIA 108 (572)
Q Consensus 93 iLS~~~d~~~~~kai~ 108 (572)
++-.+.+...+..|++
T Consensus 75 ~~p~~~~~~i~ka~i~ 90 (389)
T COG1748 75 AAPPFVDLTILKACIK 90 (389)
T ss_pred eCCchhhHHHHHHHHH
Confidence 4444555555666666
No 292
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=38.96 E-value=1.1e+02 Score=31.58 Aligned_cols=75 Identities=12% Similarity=0.189 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCCCChHHHHHH
Q 008254 29 AAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIHCLSTMMKC 106 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~~d~~~~~ka 106 (572)
....|....++.|....+.--..++++.|.+ +++-..=+.-.+ .+-+.||+.+. ..|||+=|+-...+.+.+|
T Consensus 57 ~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~----~~~~~~KIaS~d-l~n~~lL~~~A~tgkPvIlSTG~stl~EI~~A 131 (241)
T PF03102_consen 57 QHKELFEYCKELGIDFFSTPFDEESVDFLEE----LGVPAYKIASGD-LTNLPLLEYIAKTGKPVILSTGMSTLEEIERA 131 (241)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-SHHHHHHHHH----HT-SEEEE-GGG-TT-HHHHHHHHTT-S-EEEE-TT--HHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEECCCCHHHHHHHHH----cCCCEEEecccc-ccCHHHHHHHHHhCCcEEEECCCCCHHHHHHH
Confidence 4456777777888877766667788888866 344444455556 67789999986 8999999999999988888
Q ss_pred HH
Q 008254 107 IA 108 (572)
Q Consensus 107 i~ 108 (572)
+.
T Consensus 132 v~ 133 (241)
T PF03102_consen 132 VE 133 (241)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 293
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=38.71 E-value=3e+02 Score=28.11 Aligned_cols=52 Identities=15% Similarity=0.090 Sum_probs=35.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
+.+|..+|-++...+..+.-++..+..+. ..+..+.+..... ..||+||+|-
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~-~~D~~~~l~~~~~--~~fDlVv~NP 161 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVH-EGDLYDALPTALR--GRVDILAANA 161 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEE-EeechhhcchhcC--CCEeEEEECC
Confidence 36899999999999888888877665543 3344443322122 4699999984
No 294
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=38.69 E-value=1.2e+02 Score=30.99 Aligned_cols=65 Identities=11% Similarity=0.211 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CH--HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEeCC
Q 008254 29 AAAELKFKLEAMDYIVSTFY---NE--NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNI 97 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~---~a--~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS~~ 97 (572)
+...+...+++.||.+..+. +. +++++.|.+ .++|=+|+-....+ .+-+..+... ++|||++...
T Consensus 19 ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~--~~vDGiI~~s~~~~-~~~l~~~~~~-~iPvV~~~~~ 88 (279)
T PF00532_consen 19 IIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQ--RRVDGIILASSEND-DEELRRLIKS-GIPVVLIDRY 88 (279)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHH--TTSSEEEEESSSCT-CHHHHHHHHT-TSEEEEESS-
T ss_pred HHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHh--cCCCEEEEecccCC-hHHHHHHHHc-CCCEEEEEec
Confidence 45566777778899776433 22 267788888 67886665422222 1222222222 7999998776
No 295
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=38.68 E-value=81 Score=32.23 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=43.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC--C---CEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCC
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAM--D---YIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~--g---y~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd 75 (572)
.+...+|-+||=|+.+.+..+..|... + -++. ...|+...|+...+ ..||+||+|..-|.
T Consensus 97 ~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~--~~yDvIi~D~~dp~ 162 (246)
T PF01564_consen 97 HPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE--EKYDVIIVDLTDPD 162 (246)
T ss_dssp STT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS--T-EEEEEEESSSTT
T ss_pred cCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccC--CcccEEEEeCCCCC
Confidence 344468999999999999999988652 2 1333 67888877776555 38999999998876
No 296
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=38.65 E-value=59 Score=34.46 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=42.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEE-------CCHHHHHHHhhcCCCCeeEEEEeCCCCC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTF-------YNENEALSAFSDKPENFHVAIVEVTTSN 75 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta-------~~a~EAL~~L~e~~~~pDLVIvDv~mPd 75 (572)
|+|||+...--+-..|...|. .+++|... .+.+...+.+++ .+||+||--.-+.+
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~--~~PDvVIn~AAyt~ 62 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRE--TRPDVVINAAAYTA 62 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHHHh--hCCCEEEECccccc
Confidence 469999999999999999998 66777743 355667777777 78899886555544
No 297
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=38.62 E-value=73 Score=31.23 Aligned_cols=44 Identities=11% Similarity=0.122 Sum_probs=35.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIv 69 (572)
|+|+|||-.......+.+.|+..|+++..+.+..+ +. .+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~~----~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----IL----DADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----Hc----cCCEEEE
Confidence 58999999999999999999999999888875432 22 4788776
No 298
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=38.57 E-value=1.7e+02 Score=31.47 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=53.6
Q ss_pred EEEEeCCHHHHHHHHHHHH-------hCCC---EEEEECCHHHHHHHhh---cCCCCeeEEEEeCC---------CCCCC
Q 008254 20 VLLLDQDSSAAAELKFKLE-------AMDY---IVSTFYNENEALSAFS---DKPENFHVAIVEVT---------TSNTD 77 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~-------~~gy---~V~ta~~a~EAL~~L~---e~~~~pDLVIvDv~---------mPd~m 77 (572)
|||-|++-.....+...++ ..++ ..+.+.+.+||++++. +-+...|+|++|=. -|.
T Consensus 173 vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e-- 250 (308)
T PLN02716 173 VMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVS-- 250 (308)
T ss_pred EEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHH--
Confidence 7777776655444333332 3333 4458899999999988 10126899999964 121
Q ss_pred ChHHHHHHhcCCcEEEEeCCCChHHHHHHHH
Q 008254 78 GSFKFLETAKDLPTIITSNIHCLSTMMKCIA 108 (572)
Q Consensus 78 dG~~lLe~IrdlPVIiLS~~~d~~~~~kai~ 108 (572)
.--+.++.++....|-.|+.-..+.+.+...
T Consensus 251 ~l~~av~~~~~~~~lEaSGGIt~~ni~~yA~ 281 (308)
T PLN02716 251 MLKEAVELINGRFETEASGNVTLDTVHKIGQ 281 (308)
T ss_pred HHHHHHHhhCCCceEEEECCCCHHHHHHHHH
Confidence 2223333444444577888888888877766
No 299
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=38.45 E-value=1.7e+02 Score=28.18 Aligned_cols=62 Identities=13% Similarity=-0.008 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~------a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~ 96 (572)
+...++..+++.||.+..+.. ..++++.+.. ..+|.+|+...... .. .++.+. .+|+|++..
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~vdgiii~~~~~~-~~---~~~~~~~~ipvv~~~~ 85 (267)
T cd06284 17 ILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRR--KQADGIILLDGSLP-PT---ALTALAKLPPIVQACE 85 (267)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHH--cCCCEEEEecCCCC-HH---HHHHHhcCCCEEEEec
Confidence 557777788888998875543 3345666666 67897776433222 12 223333 799998854
No 300
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.43 E-value=1.5e+02 Score=28.77 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCEEEEEC---C---HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEe
Q 008254 29 AAAELKFKLEAMDYIVSTFY---N---ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITS 95 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~---~---a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS 95 (572)
+...++..++..||++.... + ..++++.+.. ..+|.||+--.-+. ...+.++.++ .+|||++-
T Consensus 17 ~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~--~~vdgiii~~~~~~--~~~~~~~~~~~~~ipvV~~~ 87 (267)
T cd06322 17 LANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFIT--KKVDAIVLSPVDSK--GIRAAIAKAKKAGIPVITVD 87 (267)
T ss_pred HHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHH--cCCCEEEEcCCChh--hhHHHHHHHHHCCCCEEEEc
Confidence 44667777888899887543 2 2355556666 67898887321111 1234556654 68999884
No 301
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=38.40 E-value=2.2e+02 Score=29.25 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=44.8
Q ss_pred ccEEEEE-eCCHHHHHHHHHHHHhCCCEEEEECC-------HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-
Q 008254 17 GLRVLLL-DQDSSAAAELKFKLEAMDYIVSTFYN-------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK- 87 (572)
Q Consensus 17 ~lRVLVV-DDD~~~~~~L~~lL~~~gy~V~ta~~-------a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir- 87 (572)
+.+|.++ .++... +...|+..||.|....+ ..+.++.+++ ..+|+||+|.---+ -++.+.++
T Consensus 31 g~~v~f~~~~~~~~---~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~--~~~d~vV~D~y~~~----~~~~~~~k~ 101 (279)
T TIGR03590 31 GAEVAFACKPLPGD---LIDLLLSAGFPVYELPDESSRYDDALELINLLEE--EKFDILIVDHYGLD----ADWEKLIKE 101 (279)
T ss_pred CCEEEEEeCCCCHH---HHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHh--cCCCEEEEcCCCCC----HHHHHHHHH
Confidence 4565544 443332 34577788998876543 4567778877 68899999975222 23445554
Q ss_pred -CCcEEEEeCCC
Q 008254 88 -DLPTIITSNIH 98 (572)
Q Consensus 88 -dlPVIiLS~~~ 98 (572)
..+++++....
T Consensus 102 ~~~~l~~iDD~~ 113 (279)
T TIGR03590 102 FGRKILVIDDLA 113 (279)
T ss_pred hCCeEEEEecCC
Confidence 45667776543
No 302
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=38.26 E-value=3.6e+02 Score=28.81 Aligned_cols=97 Identities=15% Similarity=0.193 Sum_probs=58.0
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCCCCC-----------C
Q 008254 16 KGLRVLLLDQ----DSSAAAELKFKLEAMD-YIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT-----------D 77 (572)
Q Consensus 16 ~~lRVLVVDD----D~~~~~~L~~lL~~~g-y~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~-----------m 77 (572)
.+..+++||- .....+.++.+=+... ..|. .+.+.+.|..++.. ..|.|++.+. |+. .
T Consensus 105 agv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~a---GaD~I~vg~g-~G~~~~t~~~~g~g~ 180 (325)
T cd00381 105 AGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDA---GADGVKVGIG-PGSICTTRIVTGVGV 180 (325)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhc---CCCEEEECCC-CCcCcccceeCCCCC
Confidence 3567777763 2333343443333322 3333 56788888777665 6788886321 110 0
Q ss_pred ChHHHHHHh----c--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 78 GSFKFLETA----K--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 78 dG~~lLe~I----r--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
.-+.++..+ . ++|||.--+..+...+.+++. +||+...+
T Consensus 181 p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla-------------~GA~~Vmi 225 (325)
T cd00381 181 PQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALA-------------AGADAVML 225 (325)
T ss_pred CHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH-------------cCCCEEEe
Confidence 113333333 2 589887667778899999999 99998876
No 303
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=38.25 E-value=1e+02 Score=29.55 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=56.4
Q ss_pred HHHHHHHHhCCCEEEE--ECCHHHHHHHhhcCCCCeeEEEEeCCCCCCC----ChHHHHHHhc------CCcEEEEeCCC
Q 008254 31 AELKFKLEAMDYIVST--FYNENEALSAFSDKPENFHVAIVEVTTSNTD----GSFKFLETAK------DLPTIITSNIH 98 (572)
Q Consensus 31 ~~L~~lL~~~gy~V~t--a~~a~EAL~~L~e~~~~pDLVIvDv~mPd~m----dG~~lLe~Ir------dlPVIiLS~~~ 98 (572)
..+...|+..||.+.. +......++.+.. -.||.|-+|..+...+ ....+++.+. +++| +.++-.
T Consensus 135 ~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~--~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v-ia~gVe 211 (240)
T cd01948 135 LATLRRLRALGVRIALDDFGTGYSSLSYLKR--LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKV-VAEGVE 211 (240)
T ss_pred HHHHHHHHHCCCeEEEeCCCCcHhhHHHHHh--CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeE-EEEecC
Confidence 3455556778998775 5677777788887 6799999996543211 2344555442 4554 466777
Q ss_pred ChHHHHHHHHHHHhhhhccccccCCcc----EEEeCCCCH
Q 008254 99 CLSTMMKCIAIMVMNQLFDNNFQLGAV----EFLRKPLSE 134 (572)
Q Consensus 99 d~~~~~kai~~~~~~~~~~~~~~~GA~----dYL~KPvs~ 134 (572)
+.+....+.. +|++ .|+.||...
T Consensus 212 ~~~~~~~~~~-------------~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 212 TEEQLELLRE-------------LGCDYVQGYLFSRPLPA 238 (240)
T ss_pred CHHHHHHHHH-------------cCCCeeeeceeccCCCC
Confidence 7777777777 7774 345577654
No 304
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=38.24 E-value=1.1e+02 Score=29.90 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=39.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHhhcCCCCeeEEEEeCCC
Q 008254 19 RVLLLDQDSSAAAELKFKLEAMDYI--VS-TFYNENEALSAFSDKPENFHVAIVEVTT 73 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~~gy~--V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~m 73 (572)
+|..||.+....+.++.-++..++. +. ...+..+++..+......+|+|++|--.
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy 131 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPF 131 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCC
Confidence 7999999999999999988887653 33 5566667776553311247999988644
No 305
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=38.22 E-value=3.9e+02 Score=26.23 Aligned_cols=66 Identities=14% Similarity=0.294 Sum_probs=46.7
Q ss_pred CHHHHHHHhhcCCCCee-EEEEeCCCCCCCCh--HHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccC
Q 008254 49 NENEALSAFSDKPENFH-VAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQL 122 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~pD-LVIvDv~mPd~mdG--~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~ 122 (572)
+..+.++.+.+ ..++ +++.|+..-+...| +++++.++ ++|||.--+..+.+.+.+++. .
T Consensus 147 ~~~~~~~~~~~--~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~-------------~ 211 (234)
T cd04732 147 SLEELAKRFEE--LGVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKE-------------L 211 (234)
T ss_pred CHHHHHHHHHH--cCCCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHH-------------C
Confidence 45566666666 4444 55677654432222 67777775 799999888888888988888 8
Q ss_pred CccEEEe
Q 008254 123 GAVEFLR 129 (572)
Q Consensus 123 GA~dYL~ 129 (572)
||+++++
T Consensus 212 Ga~gv~v 218 (234)
T cd04732 212 GVAGVIV 218 (234)
T ss_pred CCCEEEE
Confidence 9999876
No 306
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=38.22 E-value=1.8e+02 Score=28.08 Aligned_cols=62 Identities=13% Similarity=0.093 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCEEEEECC--H---HH-HHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh--cCCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN--E---NE-ALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~--a---~E-AL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I--rdlPVIiLS~ 96 (572)
+...++..+++.||.+..+.. . .+ +.+++.. ..+|.+|+.....+ ... ++.+ ..+|+|++-.
T Consensus 21 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~vdgiii~~~~~~-~~~---~~~~~~~~ipvV~~~~ 90 (268)
T cd06271 21 FLSGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVES--GLVDGVIISRTRPD-DPR---VALLLERGFPFVTHGR 90 (268)
T ss_pred HHHHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHc--CCCCEEEEecCCCC-ChH---HHHHHhcCCCEEEECC
Confidence 456777778888998775432 1 22 3344555 56888777433223 222 3333 3789998843
No 307
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=38.09 E-value=1.6e+02 Score=30.21 Aligned_cols=66 Identities=15% Similarity=0.247 Sum_probs=47.2
Q ss_pred CHHHHHHHhhcCCCCe-eEEEEeCCCCCCCCh--HHHHHHhc---CCcEEEEeCCCChHHHHHHH-HHHHhhhhcccccc
Q 008254 49 NENEALSAFSDKPENF-HVAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCI-AIMVMNQLFDNNFQ 121 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~p-DLVIvDv~mPd~mdG--~~lLe~Ir---dlPVIiLS~~~d~~~~~kai-~~~~~~~~~~~~~~ 121 (572)
+..+.++.+.+ ..+ .+++.|+.--+++.| ++++++++ .+|||.--+..+.+.+.+++ .
T Consensus 153 ~~~e~~~~~~~--~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~------------- 217 (258)
T PRK01033 153 DPLELAKEYEA--LGAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILN------------- 217 (258)
T ss_pred CHHHHHHHHHH--cCCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHH-------------
Confidence 45677777766 444 488888765543445 55677775 79999888889999999988 5
Q ss_pred CCccEEEe
Q 008254 122 LGAVEFLR 129 (572)
Q Consensus 122 ~GA~dYL~ 129 (572)
.|+++.++
T Consensus 218 ~GvdgViv 225 (258)
T PRK01033 218 LGADAAAA 225 (258)
T ss_pred CCCCEEEE
Confidence 78776654
No 308
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=38.04 E-value=2.3e+02 Score=28.48 Aligned_cols=97 Identities=11% Similarity=0.171 Sum_probs=54.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHh--CCC-------------EEEEECCHHHHHHHhhcC-CCCeeEEEEeCC-CCCCCChHH
Q 008254 19 RVLLLDQDSSAAAELKFKLEA--MDY-------------IVSTFYNENEALSAFSDK-PENFHVAIVEVT-TSNTDGSFK 81 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~--~gy-------------~V~ta~~a~EAL~~L~e~-~~~pDLVIvDv~-mPd~mdG~~ 81 (572)
+-.||..-+..++.++++|.- .|| .|..+.+.++|++.+.+. ...|-+|-+|.. -++ .-+++
T Consensus 44 ~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~-~is~~ 122 (185)
T PF09936_consen 44 GYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPN-TISYA 122 (185)
T ss_dssp EEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS--B-HH
T ss_pred CEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCC-CcCHH
Confidence 567888888888888888863 233 577999999999988652 246889999998 455 45666
Q ss_pred HHHHh---cCCcEEEE--eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCH
Q 008254 82 FLETA---KDLPTIIT--SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSE 134 (572)
Q Consensus 82 lLe~I---rdlPVIiL--S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~ 134 (572)
.+++. .+-|++++ |+.+-.+.+ +-.+||++.|+.-
T Consensus 123 ~lr~~l~~~~~P~LllFGTGwGL~~ev------------------~~~~D~iLePI~g 162 (185)
T PF09936_consen 123 ELRRMLEEEDRPVLLLFGTGWGLAPEV------------------MEQCDYILEPIRG 162 (185)
T ss_dssp HHHHHHHH--S-EEEEE--TT---HHH------------------HTT-SEEB--TTT
T ss_pred HHHHHHhccCCeEEEEecCCCCCCHHH------------------HHhcCeeEccccc
Confidence 66655 37888877 444433333 3367899999854
No 309
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.87 E-value=89 Score=35.37 Aligned_cols=114 Identities=16% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHhhhhhhhh-hcccCCcccccCChhhhhhhhhccCCCCC-CcCCCCCCCCCCCCCCCCCcccCCCCCCCCcccccCCC
Q 008254 374 VASHLQKYRMH-RRHILPKEDDRKWPHARDQMLRNYYPHKP-IMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPP 451 (572)
Q Consensus 374 v~SHLQkyr~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~p-~~~~~~~~~~h~~~~~~~~~~~g~~~~~~~~~~~w~~~ 451 (572)
.+.|-|.||-+ -++...|.....-+.-+...+-++.+..- .-++.|+.+++. |+.|.++++ ++
T Consensus 367 n~p~~~~y~~r~~~~gf~rp~s~~~q~pP~~~q~~~~p~~~~~s~p~pq~qNyp-pp~p~f~m~--------------~~ 431 (483)
T KOG2236|consen 367 NQPAPQMYRGRDQNRGFKRPRSNHGQKPPQSAQNSFHPSSSDNSGPSPQQQNYP-PPSPSFPMF--------------QP 431 (483)
T ss_pred cCCcccccCCcccccCCCCcccccCCCCCcccccccCccccCCCCCCcccCCCC-CCCCCCCcc--------------CC
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008254 452 GYPPWQQAESWNWK-PYPGMPADAWGCPVMPLPNGPYSSFPQGASGYHNSGVDDN 505 (572)
Q Consensus 452 ~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (572)
+.+.=.|+...-|. ||.+|...- |++-++.+|..+++.+.+-+.+-....+
T Consensus 432 hP~~~~p~~~~g~~~P~~~mpp~~---P~~~~pppP~~pp~p~~~~~q~q~~~y~ 483 (483)
T KOG2236|consen 432 HPPESNPPANFGQANPFNQMPPAY---PHQQSPPPPPPPPPPNSPMNQMQNPSYI 483 (483)
T ss_pred CCCCCCCcccccccCccccCCCCC---ccccCCCCCCCCCCCCChhhcccCCCCC
No 310
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=37.83 E-value=1.2e+02 Score=30.73 Aligned_cols=51 Identities=6% Similarity=0.186 Sum_probs=34.5
Q ss_pred hHHHHHHhc---CCcEEEEeCCCC------hHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHH
Q 008254 79 SFKFLETAK---DLPTIITSNIHC------LSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQ 142 (572)
Q Consensus 79 G~~lLe~Ir---dlPVIiLS~~~d------~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q 142 (572)
++++++.++ ++|+++|+-... ...+.++.+ .|+++.++-.+..+++...++
T Consensus 64 ~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~-------------aG~~giiipDl~~ee~~~~~~ 123 (242)
T cd04724 64 VLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKE-------------AGVDGLIIPDLPPEEAEEFRE 123 (242)
T ss_pred HHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHH-------------CCCcEEEECCCCHHHHHHHHH
Confidence 456667776 589998877543 334455555 999999997777776655333
No 311
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=37.65 E-value=2.2e+02 Score=25.36 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=16.8
Q ss_pred EEeCCHHHHHHHHHHHHhCCCEEEEE
Q 008254 22 LLDQDSSAAAELKFKLEAMDYIVSTF 47 (572)
Q Consensus 22 VVDDD~~~~~~L~~lL~~~gy~V~ta 47 (572)
+-|.+......+...|...||.+...
T Consensus 6 v~d~~K~~~~~~a~~l~~~G~~i~AT 31 (112)
T cd00532 6 VSDHVKAMLVDLAPKLSSDGFPLFAT 31 (112)
T ss_pred EEcccHHHHHHHHHHHHHCCCEEEEC
Confidence 44445566666777777778877643
No 312
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=37.44 E-value=4.2e+02 Score=27.54 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=33.4
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHHhCCCEEEEEC---CH----HHHHHHhhcCCCCeeEEEEeCC
Q 008254 16 KGLRVLLLDQDSSA---AAELKFKLEAMDYIVSTFY---NE----NEALSAFSDKPENFHVAIVEVT 72 (572)
Q Consensus 16 ~~lRVLVVDDD~~~---~~~L~~lL~~~gy~V~ta~---~a----~EAL~~L~e~~~~pDLVIvDv~ 72 (572)
.+.+|+|||-|..- .+.|....+..+..+.... +. .+++..+.. ..+|+||+|.-
T Consensus 99 ~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~--~~~D~ViIDT~ 163 (272)
T TIGR00064 99 QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA--RNIDVVLIDTA 163 (272)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH--CCCCEEEEeCC
Confidence 45799999988532 2445555666665554332 22 234444444 57999999973
No 313
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=37.29 E-value=55 Score=33.76 Aligned_cols=75 Identities=15% Similarity=0.085 Sum_probs=51.3
Q ss_pred EEEEeCCH--HHHHHHHHHHHhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHH-HHHHhc----CC
Q 008254 20 VLLLDQDS--SAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFK-FLETAK----DL 89 (572)
Q Consensus 20 VLVVDDD~--~~~~~L~~lL~~~gy~V~ta---~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~-lLe~Ir----dl 89 (572)
|-.|+-|. .=-..+..+|+..||+|+-. -..++.++..++ ..+|+|-+-..|..+|.+++ +++.++ .-
T Consensus 109 igtveGDvHdIGk~iV~~ml~~aGfevidLG~dvP~e~fve~a~e--~k~d~v~~SalMTttm~~~~~viE~L~eeGiRd 186 (227)
T COG5012 109 IGTVEGDVHDIGKNIVATMLEAAGFEVIDLGRDVPVEEFVEKAKE--LKPDLVSMSALMTTTMIGMKDVIELLKEEGIRD 186 (227)
T ss_pred EEeecccHHHHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHHH--cCCcEEechHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 33444443 33456788889999998843 356888899998 77999998888876566644 444444 45
Q ss_pred cEEEEeC
Q 008254 90 PTIITSN 96 (572)
Q Consensus 90 PVIiLS~ 96 (572)
+|+++-+
T Consensus 187 ~v~v~vG 193 (227)
T COG5012 187 KVIVMVG 193 (227)
T ss_pred CeEEeec
Confidence 6777644
No 314
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=37.14 E-value=3e+02 Score=27.35 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=44.2
Q ss_pred HHHHHHHhhcCCCCeeEEEEeCCCC-CCCChHHHHHHhc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEE
Q 008254 50 ENEALSAFSDKPENFHVAIVEVTTS-NTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEF 127 (572)
Q Consensus 50 a~EAL~~L~e~~~~pDLVIvDv~mP-d~mdG~~lLe~Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dY 127 (572)
.++....++. .|++|+=..-. . .-|..+++.+. .+|||. |..... +.+. .+-.++
T Consensus 258 ~~~~~~~~~~----ad~~v~ps~~e~~-~~~~~~~Ea~a~G~PvI~-~~~~~~----~~i~-------------~~~~g~ 314 (366)
T cd03822 258 DEELPELFSA----ADVVVLPYRSADQ-TQSGVLAYAIGFGKPVIS-TPVGHA----EEVL-------------DGGTGL 314 (366)
T ss_pred HHHHHHHHhh----cCEEEeccccccc-ccchHHHHHHHcCCCEEe-cCCCCh----heee-------------eCCCcE
Confidence 4555666655 46666422222 0 12345666554 788775 333321 1222 566789
Q ss_pred EeCCCCHHHHHHHHHHHHH
Q 008254 128 LRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 128 L~KPvs~eeL~~~~q~Vlr 146 (572)
+..+-+.+++.+++..++.
T Consensus 315 ~~~~~d~~~~~~~l~~l~~ 333 (366)
T cd03822 315 LVPPGDPAALAEAIRRLLA 333 (366)
T ss_pred EEcCCCHHHHHHHHHHHHc
Confidence 9999999999998888775
No 315
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=37.05 E-value=1.7e+02 Score=28.56 Aligned_cols=63 Identities=11% Similarity=0.020 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCCEEEEECC----HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN----ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~----a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
.+.+++...+++.||.+..+.. ...+++.+.. ..+|-||+.-.. . + ...++.+. .+|||++..
T Consensus 27 ~~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~--~~~dgiii~~~~-~--~-~~~~~~~~~~~ipvV~~~~ 95 (275)
T cd06295 27 SLLGGIADALAERGYDLLLSFVSSPDRDWLARYLAS--GRADGVILIGQH-D--Q-DPLPERLAETGLPFVVWGR 95 (275)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHh--CCCCEEEEeCCC-C--C-hHHHHHHHhCCCCEEEECC
Confidence 3456678888888998775432 2345556655 578977763211 1 2 24456654 799998854
No 316
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=36.77 E-value=3.9e+02 Score=25.59 Aligned_cols=97 Identities=10% Similarity=0.016 Sum_probs=60.0
Q ss_pred ccEEEEEeCCH--HHHHHHHHHHHhCCCEE----EEECCHHHHHHHhhcCCCCeeEEEEeCCC-CC---CCChHHHHHHh
Q 008254 17 GLRVLLLDQDS--SAAAELKFKLEAMDYIV----STFYNENEALSAFSDKPENFHVAIVEVTT-SN---TDGSFKFLETA 86 (572)
Q Consensus 17 ~lRVLVVDDD~--~~~~~L~~lL~~~gy~V----~ta~~a~EAL~~L~e~~~~pDLVIvDv~m-Pd---~mdG~~lLe~I 86 (572)
|...+++.+.. .....+...++..|..+ ..+.+..+++..+. ...|.|.+...- +. ...+.+.++.+
T Consensus 77 Gad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~---~~~d~v~~~~~~~~~~~~~~~~~~~i~~~ 153 (202)
T cd04726 77 GADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK---LGVDIVILHRGIDAQAAGGWWPEDDLKKV 153 (202)
T ss_pred CCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH---CCCCEEEEcCcccccccCCCCCHHHHHHH
Confidence 34455554432 23445555666666543 36668888888444 367888775311 11 03457777777
Q ss_pred c---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 87 K---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 87 r---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
+ ++||++.-+. ..+.+.++++ .||+.++.-
T Consensus 154 ~~~~~~~i~~~GGI-~~~~i~~~~~-------------~Gad~vvvG 186 (202)
T cd04726 154 KKLLGVKVAVAGGI-TPDTLPEFKK-------------AGADIVIVG 186 (202)
T ss_pred HhhcCCCEEEECCc-CHHHHHHHHh-------------cCCCEEEEe
Confidence 6 5777766555 4788888888 999987653
No 317
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=36.77 E-value=2.2e+02 Score=30.49 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=41.7
Q ss_pred ChHHHHHHhc---CCcEE--EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe-----CCCCHHHHHHHHHHHHHH
Q 008254 78 GSFKFLETAK---DLPTI--ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR-----KPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 78 dG~~lLe~Ir---dlPVI--iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~-----KPvs~eeL~~~~q~Vlrr 147 (572)
.++++|++++ .+||| ...+....+.+..++. +||+++++ |.-++.+....+..++..
T Consensus 190 ~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme-------------~GAdgVaVGSaI~ks~dP~~~akafv~ai~~ 256 (293)
T PRK04180 190 APYELVKEVAELGRLPVVNFAAGGIATPADAALMMQ-------------LGADGVFVGSGIFKSGDPEKRARAIVEATTH 256 (293)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHH-------------hCCCEEEEcHHhhcCCCHHHHHHHHHHHHHH
Confidence 4688888885 79998 6777778999999998 99998865 344566655555555543
No 318
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=36.70 E-value=1.2e+02 Score=31.01 Aligned_cols=65 Identities=8% Similarity=0.017 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~------a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
.+.+.++..++..||.+..+.. ..++++.+.. ..+|.||+--..+. ..-+.++.++ .+|||++-.
T Consensus 15 ~~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~--~~vDgIIi~~~~~~--~~~~~l~~~~~~~iPvV~~d~ 87 (302)
T TIGR02634 15 KDRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIA--RGVDVLVIIPQNGQ--VLSNAVQEAKDEGIKVVAYDR 87 (302)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChh--HHHHHHHHHHHCCCeEEEecC
Confidence 3567788888888998875542 2356667777 67998887432111 1235566654 689998854
No 319
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=36.66 E-value=3.7e+02 Score=32.82 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=7.1
Q ss_pred CCCCCCcccCCCCCCC
Q 008254 427 PTGPVYPVWGAPSNHL 442 (572)
Q Consensus 427 ~~~~~~~~~g~~~~~~ 442 (572)
|++|..+--|++|...
T Consensus 528 P~PP~~pp~gG~g~pp 543 (1102)
T KOG1924|consen 528 PPPPPLPPTGGTGPPP 543 (1102)
T ss_pred CCCCCCCCCCCCCCCC
Confidence 3334444455555443
No 320
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=36.65 E-value=3.5e+02 Score=27.40 Aligned_cols=95 Identities=21% Similarity=0.272 Sum_probs=59.3
Q ss_pred cEEEEEeCC----HHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCC-------CCChHHHHHH
Q 008254 18 LRVLLLDQD----SSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN-------TDGSFKFLET 85 (572)
Q Consensus 18 lRVLVVDDD----~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd-------~mdG~~lLe~ 85 (572)
..|+-+|-- +..+..|-..++..+..+. -+++.+|++...+- .||+|=+= |.+ ....|+|+++
T Consensus 65 adIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~---G~D~I~TT--LsGYT~~t~~~~pD~~lv~~ 139 (192)
T PF04131_consen 65 ADIIALDATDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAEL---GFDIIGTT--LSGYTPYTKGDGPDFELVRE 139 (192)
T ss_dssp -SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHT---T-SEEE-T--TTTSSTTSTTSSHHHHHHHH
T ss_pred CCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHc---CCCEEEcc--cccCCCCCCCCCCCHHHHHH
Confidence 345555532 1234445555555442222 67899999998876 68988653 322 0235889998
Q ss_pred hc--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 86 AK--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 86 Ir--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
+. ++|||.=-.....+.+.+|+. +||+..++-
T Consensus 140 l~~~~~pvIaEGri~tpe~a~~al~-------------~GA~aVVVG 173 (192)
T PF04131_consen 140 LVQADVPVIAEGRIHTPEQAAKALE-------------LGAHAVVVG 173 (192)
T ss_dssp HHHTTSEEEEESS--SHHHHHHHHH-------------TT-SEEEE-
T ss_pred HHhCCCcEeecCCCCCHHHHHHHHh-------------cCCeEEEEC
Confidence 86 899888888899999999999 999998874
No 321
>PLN00142 sucrose synthase
Probab=36.61 E-value=6.6e+02 Score=30.72 Aligned_cols=94 Identities=14% Similarity=0.113 Sum_probs=57.7
Q ss_pred HHHHHHHHhCCC--EEEEEC------CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeCCCChH
Q 008254 31 AELKFKLEAMDY--IVSTFY------NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLS 101 (572)
Q Consensus 31 ~~L~~lL~~~gy--~V~ta~------~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~~~d~~ 101 (572)
..|..+....+. .|.... ...+....+.. ..|++++=- .-. .-|+-+++.+. .+|||. |..+...
T Consensus 629 ~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iad---aaDVfVlPS-~~E-gFGLvvLEAMA~GlPVVA-TdvGG~~ 702 (815)
T PLN00142 629 KKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIAD---TKGAFVQPA-LYE-AFGLTVVEAMTCGLPTFA-TCQGGPA 702 (815)
T ss_pred HHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHh---hCCEEEeCC-ccc-CCCHHHHHHHHcCCCEEE-cCCCCHH
Confidence 345556666543 343221 12344444443 246766421 223 35778888886 899986 4444433
Q ss_pred HHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 102 TMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 102 ~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
+.+. .|..+|++.|-+.++|.+++..++.
T Consensus 703 ---EIV~-------------dG~tG~LV~P~D~eaLA~aI~~lLe 731 (815)
T PLN00142 703 ---EIIV-------------DGVSGFHIDPYHGDEAANKIADFFE 731 (815)
T ss_pred ---HHhc-------------CCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 3444 8999999999999999998877664
No 322
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=36.55 E-value=1.2e+02 Score=29.39 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCCCEEEEE-C---CHH---HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 29 AAAELKFKLEAMDYIVSTF-Y---NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta-~---~a~---EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
+...++..++..|+.+..+ . +.+ +.++.+.. ..+|.||+...-+. ...+++++++ .+|||++-..
T Consensus 16 ~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~--~~~d~Iiv~~~~~~--~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 16 VIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAIS--QGVDGIIVSPVDPD--SLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHH--TTESEEEEESSSTT--TTHHHHHHHHHTTSEEEEESST
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHH--hcCCEEEecCCCHH--HHHHHHHHHhhcCceEEEEecc
Confidence 4566777777788877763 2 233 34444445 57999998876555 4668888886 7999988664
No 323
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=36.55 E-value=5.7e+02 Score=27.49 Aligned_cols=107 Identities=12% Similarity=0.145 Sum_probs=64.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CEEEEE--CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMD--YIVSTF--YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTI 92 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~g--y~V~ta--~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVI 92 (572)
++..++.+.+. ...++.+.+..+ ..|... -+.++..+.+.. ...|+++.=-...+ -|..+++.+. .+|||
T Consensus 264 l~~~iiG~g~~-~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~--~~~~v~v~~S~~Eg--~p~~llEAma~G~PVI 338 (407)
T cd04946 264 IKWTHIGGGPL-EDTLKELAESKPENISVNFTGELSNSEVYKLYKE--NPVDVFVNLSESEG--LPVSIMEAMSFGIPVI 338 (407)
T ss_pred EEEEEEeCchH-HHHHHHHHHhcCCCceEEEecCCChHHHHHHHhh--cCCCEEEeCCcccc--ccHHHHHHHHcCCCEE
Confidence 44455665433 345665554432 244432 355666677765 45677664322222 3566788776 89998
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCC-CCHHHHHHHHHHHHH
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKP-LSEDKLRNLWQHVVH 146 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KP-vs~eeL~~~~q~Vlr 146 (572)
. |..+.. .+.+. .|..+++.-+ .+.++|.+++..++.
T Consensus 339 a-s~vgg~---~e~i~-------------~~~~G~l~~~~~~~~~la~~I~~ll~ 376 (407)
T cd04946 339 A-TNVGGT---PEIVD-------------NGGNGLLLSKDPTPNELVSSLSKFID 376 (407)
T ss_pred e-CCCCCc---HHHhc-------------CCCcEEEeCCCCCHHHHHHHHHHHHh
Confidence 6 443432 23344 7778898876 478999998888775
No 324
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=36.54 E-value=36 Score=38.06 Aligned_cols=52 Identities=21% Similarity=0.283 Sum_probs=29.5
Q ss_pred CCCceecCHHHHHHHHHHHHHhC-CCCCC--------------CHHHHhhhCCCCCCHHHHHHhhhhh
Q 008254 329 KKMKVDWTPELHKKFVQAVEQLG-VDQAI--------------PSRILELMKVEGLTRHNVASHLQKY 381 (572)
Q Consensus 329 kk~r~~Wt~eLh~~Fv~av~~lG-~~~a~--------------Pk~il~lM~v~glt~~~v~SHLQky 381 (572)
++..-+|++++...|++|+...- ..... -.+|...-| .-=||.+|+||+|-.
T Consensus 46 ~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg-~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 46 GDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTG-KTRTRKQVSSHIQVL 112 (431)
T ss_dssp GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS-----SHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhC-cccchhHHHHHHHHH
Confidence 45677999999999999998773 11111 112222222 335889999999998
No 325
>PF00196 GerE: Bacterial regulatory proteins, luxR family; InterPro: IPR000792 This domain is a DNA-binding, helix-turn-helix (HTH) domain of about 65 amino acids, present in transcription regulators of the LuxR/FixJ family of response regulators. The domain is named after Vibrio fischeri luxR, a transcriptional activator for quorum-sensing control of luminescence. LuxR-type HTH domain proteins occur in a variety of organisms. The DNA-binding HTH domain is usually located in the C-terminal region; the N-terminal region often containing an autoinducer-binding domain or a response regulatory domain. Most luxR-type regulators act as transcription activators, but some can be repressors or have a dual role for different sites. LuxR-type HTH regulators control a wide variety of activities in various biological processes. The luxR-type, DNA-binding HTH domain forms a four-helical bundle structure. The HTH motif comprises the second and third helices, known as the scaffold and recognition helix, respectively. The HTH binds DNA in the major groove, where the N-terminal part of the recognition helix makes most of the DNA contacts. The fourth helix is involved in dimerisation of gerE and traR. Signalling events by one of the four activation mechanisms described below lead to multimerisation of the regulator. The regulators bind DNA as multimers [, , ]. LuxR-type HTH proteins can be activated by one of four different mechanisms: 1) Regulators which belong to a two-component sensory transduction system where the protein is activated by its phosphorylation, generally on an aspartate residue, by a transmembrane kinase [, ]. Some proteins that belong to this category are: Rhizobiaceae fixJ (global regulator inducing expression of nitrogen-fixation genes in microaerobiosis) Escherichia coli and Salmonella typhimurium uhpA (activates hexose phosphate transport gene uhpT) E. coli narL and narP (activate nitrate reductase operon) Enterobacteria rcsB (regulation of exopolysaccharide biosynthesis in enteric and plant pathogenesis) Bordetella pertussis bvgA (virulence factor) Bacillus subtilis coma (involved in expression of late-expressing competence genes) 2) Regulators which are activated, or in very rare cases repressed, when bound to N-acyl homoserine lactones, which are used as quorum sensing molecules in a variety of Gram-negative bacteria []: V. fischeri luxR (activates bioluminescence operon) Agrobacterium tumefaciens traR (regulation of Ti plasmid transfer) Erwinia carotovora carR (control of carbapenem antibiotics biosynthesis) E. carotovora expR (virulence factor for soft rot disease; activates plant tissue macerating enzyme genes) Pseudomonas aeruginosa lasR (activates elastase gene lasB) Erwinia chrysanthemi echR and Erwinia stewartii esaR Pseudomonas chlororaphis phzR (positive regulator of phenazine antibiotic production) Pseudomonas aeruginosa rhlR (activates rhlAB operon and lasB gene) 3) Autonomous effector domain regulators, without a regulatory domain, represented by gerE []. B. subtilis gerE (transcription activator and repressor for the regulation of spore formation) 4) Multiple ligand-binding regulators, exemplified by malT []. E. coli malT (activates maltose operon; MalT binds ATP and maltotriose); GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3SZT_A 3CLO_A 1H0M_A 1L3L_A 3C57_B 1ZLK_B 1ZLJ_H 3C3W_B 1RNL_A 1ZG1_A ....
Probab=36.50 E-value=20 Score=28.11 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=26.9
Q ss_pred CCCChhHHHHHHHHHhcchhhhhhcccccccccc
Q 008254 158 DSLKPVKESVVSMLHLKLENGESKNEKSENTEYV 191 (572)
Q Consensus 158 ~sLt~RE~eVL~ll~~~len~e~~~e~s~~~e~v 191 (572)
..||++|.+|+.++..|..+.+..........+|
T Consensus 2 ~~LT~~E~~vl~~l~~G~~~~eIA~~l~is~~tV 35 (58)
T PF00196_consen 2 PSLTERELEVLRLLAQGMSNKEIAEELGISEKTV 35 (58)
T ss_dssp GSS-HHHHHHHHHHHTTS-HHHHHHHHTSHHHHH
T ss_pred CccCHHHHHHHHHHHhcCCcchhHHhcCcchhhH
Confidence 4699999999999999999999988777665554
No 326
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=36.37 E-value=3.1e+02 Score=31.71 Aligned_cols=97 Identities=12% Similarity=0.130 Sum_probs=66.0
Q ss_pred HHHHHHHHHhCCCEEEE--ECCHHHHHHHhhcCCCCeeEEEEeCCCC----CCCChHHHHHHhc------CCcEEEEeCC
Q 008254 30 AAELKFKLEAMDYIVST--FYNENEALSAFSDKPENFHVAIVEVTTS----NTDGSFKFLETAK------DLPTIITSNI 97 (572)
Q Consensus 30 ~~~L~~lL~~~gy~V~t--a~~a~EAL~~L~e~~~~pDLVIvDv~mP----d~mdG~~lLe~Ir------dlPVIiLS~~ 97 (572)
....-..|+..||.+.. |.++...+..|.. ..+|.|-+|-.+- +......+++.+. ++.|| ..+-
T Consensus 680 ~~~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~--l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vi-a~gV 756 (799)
T PRK11359 680 IFKRIQILRDMGVGLSVDDFGTGFSGLSRLVS--LPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVV-AEGV 756 (799)
T ss_pred HHHHHHHHHHCCCEEEEECCCCchhhHHHHhh--CCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEE-EEcC
Confidence 33445567888998874 6788888888888 7899999997542 1012344555542 45554 5566
Q ss_pred CChHHHHHHHHHHHhhhhccccccCCcc----EEEeCCCCHHHHHHHHH
Q 008254 98 HCLSTMMKCIAIMVMNQLFDNNFQLGAV----EFLRKPLSEDKLRNLWQ 142 (572)
Q Consensus 98 ~d~~~~~kai~~~~~~~~~~~~~~~GA~----dYL~KPvs~eeL~~~~q 142 (572)
++.+....+.. +|++ .|+.||...++|...++
T Consensus 757 e~~~~~~~l~~-------------~g~~~~QG~~~~~p~~~~~~~~~~~ 792 (799)
T PRK11359 757 ETKEQFEMLRK-------------IHCRVIQGYFFSRPLPAEEIPGWMS 792 (799)
T ss_pred CCHHHHHHHHh-------------cCCCEEeeCeecCCCCHHHHHHHHH
Confidence 66666666666 8876 46789999999988443
No 327
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=36.35 E-value=1.1e+02 Score=21.49 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=32.8
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCCHHHHhhhCCCCCCHHHHHHhhhhh
Q 008254 334 DWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKY 381 (572)
Q Consensus 334 ~Wt~eLh~~Fv~av~~lG~~~a~Pk~il~lM~v~glt~~~v~SHLQky 381 (572)
.||.+=+..|+.++.+.|. ..=+.|-+.|+ +=|..+|+.|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~--~~w~~Ia~~~~--~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK--NNWEKIAKELP--GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc--CCHHHHHhHcC--CCCHHHHHHHHHHh
Confidence 4999999999999999994 22456766663 46777887776543
No 328
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=36.18 E-value=5.6e+02 Score=27.25 Aligned_cols=38 Identities=16% Similarity=0.085 Sum_probs=26.4
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHH
Q 008254 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNEN 51 (572)
Q Consensus 13 ~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~ 51 (572)
-.|+.++|||++.-...+..+. .+.+.||.|..+....
T Consensus 8 ~~~~~~~ilIiG~g~~~~~~~~-a~~~~G~~v~~~~~~~ 45 (395)
T PRK09288 8 LSPSATRVMLLGSGELGKEVAI-EAQRLGVEVIAVDRYA 45 (395)
T ss_pred CCCCCCEEEEECCCHHHHHHHH-HHHHCCCEEEEEeCCC
Confidence 3456789999999876555444 4677899887665443
No 329
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=36.10 E-value=5e+02 Score=27.49 Aligned_cols=105 Identities=10% Similarity=0.090 Sum_probs=65.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPT 91 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPV 91 (572)
..+++|+.+.+. ...++.+++..+. .|.... +.++..+.+.. .|++|+--. .+ .-|+.+++.+. .+||
T Consensus 224 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~----ad~~v~pS~-~E-~~g~~~~EAma~G~PV 296 (398)
T cd03796 224 NVRFIIGGDGPK-RILLEEMREKYNLQDRVELLGAVPHERVRDVLVQ----GHIFLNTSL-TE-AFCIAIVEAASCGLLV 296 (398)
T ss_pred CEEEEEEeCCch-HHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHh----CCEEEeCCh-hh-ccCHHHHHHHHcCCCE
Confidence 467888887653 4667777777654 344333 45677777766 578776433 33 35678888876 8999
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
|.. ..+....+ +. .|. .++. +-+.++|.+++..++..
T Consensus 297 I~s-~~gg~~e~---i~-------------~~~-~~~~-~~~~~~l~~~l~~~l~~ 333 (398)
T cd03796 297 VST-RVGGIPEV---LP-------------PDM-ILLA-EPDVESIVRKLEEAISI 333 (398)
T ss_pred EEC-CCCCchhh---ee-------------CCc-eeec-CCCHHHHHHHHHHHHhC
Confidence 764 43333222 12 332 2444 44889999988887763
No 330
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=36.07 E-value=2e+02 Score=30.63 Aligned_cols=85 Identities=12% Similarity=0.087 Sum_probs=57.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CCCE---EEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHH--hcCC
Q 008254 19 RVLLLDQDSSAAAELKFKLEA----MDYI---VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLET--AKDL 89 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~----~gy~---V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~--Irdl 89 (572)
-|||=|++-.....++..+++ .+|. -+.+.+.+++.+++.. .+|+|++|=.-|+ .--+.++. ++.-
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a---gaDiImLDNm~~e--~~~~av~~l~~~~~ 234 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA---GADIIMLDNMSPE--ELKEAVKLLGLAGR 234 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc---CCCEEEecCCCHH--HHHHHHHHhccCCc
Confidence 377777777776667666664 3662 2478999999999987 6899999954443 33444444 3344
Q ss_pred cEEEEeCCCChHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIA 108 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~ 108 (572)
.++=.|+.-..+.+...-.
T Consensus 235 ~~lEaSGgIt~~ni~~yA~ 253 (280)
T COG0157 235 ALLEASGGITLENIREYAE 253 (280)
T ss_pred eEEEEeCCCCHHHHHHHhh
Confidence 5555777777777766655
No 331
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=36.06 E-value=2e+02 Score=26.43 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=49.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHH---HhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKL---EAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK- 87 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL---~~~gy--~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir- 87 (572)
.|..--++||.||+..++-|+.-- ++.+. -|+-+ +..++|..|++ .-+++-+ .- .+|-++.+++.
T Consensus 21 ~pg~~p~FlIGdD~~S~~WL~~~~~~L~~l~AvGlVVnV-~t~~~l~~Lr~--lapgl~l-----~P-~sgddLa~rL~l 91 (105)
T TIGR03765 21 LPGLTPLFLIGDDPASRQWLQQNAAALKSLGAVGLVVNV-ETAAALQRLRA--LAPGLPL-----LP-VSGDDLAERLGL 91 (105)
T ss_pred CCCCCceEEEeCCHHHHHHHHHHHHHHHHCCCeEEEEec-CCHHHHHHHHH--HcCCCcc-----cC-CCHHHHHHHhCC
Confidence 444446999999999999887654 44443 22333 34567888887 3445544 33 58999999985
Q ss_pred -CCcEEEEeC
Q 008254 88 -DLPTIITSN 96 (572)
Q Consensus 88 -dlPVIiLS~ 96 (572)
+-||+|...
T Consensus 92 ~hYPvLit~t 101 (105)
T TIGR03765 92 RHYPVLITAT 101 (105)
T ss_pred CcccEEEecC
Confidence 789887654
No 332
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.99 E-value=2.6e+02 Score=29.84 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=56.9
Q ss_pred cEEEEEeC--CH---HHHHHHHHHHHhCCCEEEEECCHHHHHHHh----------------hcCCCCeeEEEEeCCCCCC
Q 008254 18 LRVLLLDQ--DS---SAAAELKFKLEAMDYIVSTFYNENEALSAF----------------SDKPENFHVAIVEVTTSNT 76 (572)
Q Consensus 18 lRVLVVDD--D~---~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L----------------~e~~~~pDLVIvDv~mPd~ 76 (572)
.+|.|+-. .+ .+...|...|+..|+++....+..+.+..- ......+|+||+ +-
T Consensus 2 ~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~---iG-- 76 (305)
T PRK02649 2 PKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIV---LG-- 76 (305)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEE---Ee--
Confidence 35677622 22 345667777778899887655433322100 010023577775 22
Q ss_pred CCh--HHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 77 DGS--FKFLETAK--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 77 mdG--~~lLe~Ir--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
.|| +..++.+. ++||+-+. .|-.+||. .++.+++...++.+++...
T Consensus 77 GDGTlL~aar~~~~~~iPilGIN--------------------------~G~lGFLt-~~~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 77 GDGTVLSAARQLAPCGIPLLTIN--------------------------TGHLGFLT-EAYLNQLDEAIDQVLAGQY 126 (305)
T ss_pred CcHHHHHHHHHhcCCCCcEEEEe--------------------------CCCCcccc-cCCHHHHHHHHHHHHcCCc
Confidence 355 22333332 67776542 67777887 4678899998888887643
No 333
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=35.69 E-value=1.3e+02 Score=29.40 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
.+...+...+++.||.+..+.. . .++++.+.. ..+|-||+.-.-++ ...+.++.+. .+|||++-.
T Consensus 16 ~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~--~~~~~i~~~~~~~iPvV~~~~ 88 (273)
T cd06309 16 AETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIA--QGVDVIILAPVVET--GWDPVLKEAKAAGIPVILVDR 88 (273)
T ss_pred HHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEcCCccc--cchHHHHHHHHCCCCEEEEec
Confidence 3566777778888999887642 2 245666666 57898877432111 1245666664 789998865
No 334
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=35.52 E-value=3.3e+02 Score=29.50 Aligned_cols=76 Identities=14% Similarity=0.134 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCCCChHHHHH
Q 008254 28 SAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIHCLSTMMK 105 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~~d~~~~~k 105 (572)
.....|....++.|..+.+.--..++++++.+ . ++-+.=+.-.+ +.-+.||+.+. ..|||+=|+-.+.+.+..
T Consensus 76 e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~--~--~v~~~KIaS~~-~~n~pLL~~~A~~gkPvilStGmatl~Ei~~ 150 (329)
T TIGR03569 76 EDHRELKEYCESKGIEFLSTPFDLESADFLED--L--GVPRFKIPSGE-ITNAPLLKKIARFGKPVILSTGMATLEEIEA 150 (329)
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh--c--CCCEEEECccc-ccCHHHHHHHHhcCCcEEEECCCCCHHHHHH
Confidence 34556677777778888877777788888877 3 33355555666 67799999996 899999999999999988
Q ss_pred HHH
Q 008254 106 CIA 108 (572)
Q Consensus 106 ai~ 108 (572)
|+.
T Consensus 151 Av~ 153 (329)
T TIGR03569 151 AVG 153 (329)
T ss_pred HHH
Confidence 887
No 335
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.24 E-value=1.6e+02 Score=29.16 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhCCCEEEEECC--HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN--ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~--a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
.+...+...+++.||.+..+.. ..++++.+.. ..+|-+|+-..... .+.++.++ .+|||++-.
T Consensus 21 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~--~~~dgiii~~~~~~----~~~~~~~~~~~ipvV~~~~ 87 (283)
T cd06279 21 QFLAGVAEVLDAAGVNLLLLPASSEDSDSALVVS--ALVDGFIVYGVPRD----DPLVAALLRRGLPVVVVDQ 87 (283)
T ss_pred HHHHHHHHHHHHCCCEEEEecCccHHHHHHHHHh--cCCCEEEEeCCCCC----hHHHHHHHHcCCCEEEEec
Confidence 3566777888889998876554 3467777777 67887777432212 24555554 689998854
No 336
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=35.22 E-value=1.1e+02 Score=36.49 Aligned_cols=77 Identities=21% Similarity=0.246 Sum_probs=49.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEe-C-CCCCCCChHHHHHHhc--CCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVE-V-TTSNTDGSFKFLETAK--DLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvD-v-~mPd~mdG~~lLe~Ir--dlPV 91 (572)
.+.+|+|||-.......|...|++.|+++.++.... ..+.+.. ..+|.||+- = .-|...+-.++++.+. ++||
T Consensus 515 ~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~-~~~~~~~--~~~DgLILsgGPGsp~d~~~~~~I~~~~~~~iPv 591 (717)
T TIGR01815 515 EGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFDE--RRPDLVVLSPGPGRPADFDVAGTIDAALARGLPV 591 (717)
T ss_pred CCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCC-Chhhhhh--cCCCEEEEcCCCCCchhcccHHHHHHHHHCCCCE
Confidence 578999999998888999999999999887664331 1222333 458887761 0 1111012244555442 7898
Q ss_pred EEEe
Q 008254 92 IITS 95 (572)
Q Consensus 92 IiLS 95 (572)
+=+.
T Consensus 592 LGIC 595 (717)
T TIGR01815 592 FGVC 595 (717)
T ss_pred EEEC
Confidence 8664
No 337
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=35.19 E-value=2.5e+02 Score=28.94 Aligned_cols=73 Identities=11% Similarity=0.175 Sum_probs=51.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCEEEEEC-------CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYIVSTFY-------NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~-gy~V~ta~-------~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir 87 (572)
.+.+|.++...+.+.+.+...|++. +.++.-+. ..++.++.+.. ..+|+|++-+.+|- .. .++.+.+
T Consensus 104 ~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~--s~~dil~VglG~Pk-QE--~~~~~~~ 178 (243)
T PRK03692 104 EGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHA--SGAKIVTVAMGSPK-QE--IFMRDCR 178 (243)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEECCCcH-HH--HHHHHHH
Confidence 4689999999999999999988764 44544221 22335677777 78999999999997 33 3455554
Q ss_pred ---CCcEEE
Q 008254 88 ---DLPTII 93 (572)
Q Consensus 88 ---dlPVIi 93 (572)
..+|++
T Consensus 179 ~~~~~~v~~ 187 (243)
T PRK03692 179 LVYPDALYM 187 (243)
T ss_pred HhCCCCEEE
Confidence 345543
No 338
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=35.13 E-value=2.4e+02 Score=32.62 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=22.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEe
Q 008254 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVE 70 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvD 70 (572)
+|+|+.-...-+ .+.+.|.+.|+.++..+.-.+.++.+++ ..+.++.-|
T Consensus 402 ~vII~G~Gr~G~-~va~~L~~~g~~vvvID~d~~~v~~~~~--~g~~v~~GD 450 (601)
T PRK03659 402 QVIIVGFGRFGQ-VIGRLLMANKMRITVLERDISAVNLMRK--YGYKVYYGD 450 (601)
T ss_pred CEEEecCchHHH-HHHHHHHhCCCCEEEEECCHHHHHHHHh--CCCeEEEee
Confidence 455555443333 3444444455555544444444444444 333444443
No 339
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=35.09 E-value=4.6e+02 Score=25.93 Aligned_cols=75 Identities=13% Similarity=0.195 Sum_probs=49.1
Q ss_pred CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEE
Q 008254 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEF 127 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dY 127 (572)
+.++..+.+.. .|++|+-.. .+ .-|..+++.+. .+|||.. ..... .+.+. .+-.++
T Consensus 256 ~~~~~~~~~~~----~d~~l~~s~-~e-~~~~~~lEa~a~g~PvI~~-~~~~~---~~~i~-------------~~~~g~ 312 (364)
T cd03814 256 DGEELAAAYAS----ADVFVFPSR-TE-TFGLVVLEAMASGLPVVAP-DAGGP---ADIVT-------------DGENGL 312 (364)
T ss_pred CHHHHHHHHHh----CCEEEECcc-cc-cCCcHHHHHHHcCCCEEEc-CCCCc---hhhhc-------------CCcceE
Confidence 45555566655 477665432 23 34677888886 8998754 33332 22233 567889
Q ss_pred EeCCCCHHHHHHHHHHHHH
Q 008254 128 LRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 128 L~KPvs~eeL~~~~q~Vlr 146 (572)
+..+-+.++|.+.+..++.
T Consensus 313 ~~~~~~~~~l~~~i~~l~~ 331 (364)
T cd03814 313 LVEPGDAEAFAAALAALLA 331 (364)
T ss_pred EcCCCCHHHHHHHHHHHHc
Confidence 9999999999998887765
No 340
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=34.89 E-value=4.1e+02 Score=27.46 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=35.6
Q ss_pred HHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccE------EEeCCCCHHHHHHHHHHH
Q 008254 81 KFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVE------FLRKPLSEDKLRNLWQHV 144 (572)
Q Consensus 81 ~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~d------YL~KPvs~eeL~~~~q~V 144 (572)
+++.+++ ++|||..-+..+.+.+.+++. .||+. ++..|.-..++..-+...
T Consensus 224 ~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~-------------~GAd~V~igr~~l~~p~~~~~i~~~l~~~ 283 (300)
T TIGR01037 224 RMVYDVYKMVDIPIIGVGGITSFEDALEFLM-------------AGASAVQVGTAVYYRGFAFKKIIEGLIAF 283 (300)
T ss_pred HHHHHHHhcCCCCEEEECCCCCHHHHHHHHH-------------cCCCceeecHHHhcCchHHHHHHHHHHHH
Confidence 4555554 799999999999999999998 88875 455675444444433333
No 341
>PRK06182 short chain dehydrogenase; Validated
Probab=34.73 E-value=1.9e+02 Score=28.79 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=50.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVI 92 (572)
+..|||..-..-+-..+...|.+.|+.|..+....+.++.+.. ....++.+|+.-++ +-.++++.+. .+-+|
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~--~~~~~~~~Dv~~~~--~~~~~~~~~~~~~~~id~l 78 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS--LGVHPLSLDVTDEA--SIKAAVDTIIAEEGRIDVL 78 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh--CCCeEEEeeCCCHH--HHHHHHHHHHHhcCCCCEE
Confidence 4578999988889999999998899998866555556665555 45677778875443 2233444442 34455
Q ss_pred EEe
Q 008254 93 ITS 95 (572)
Q Consensus 93 iLS 95 (572)
+..
T Consensus 79 i~~ 81 (273)
T PRK06182 79 VNN 81 (273)
T ss_pred EEC
Confidence 543
No 342
>PRK07695 transcriptional regulator TenI; Provisional
Probab=34.72 E-value=4.4e+02 Score=25.62 Aligned_cols=66 Identities=14% Similarity=0.138 Sum_probs=45.6
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEeCCCCC------CCChHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhc
Q 008254 46 TFYNENEALSAFSDKPENFHVAIVEVTTSN------TDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLF 116 (572)
Q Consensus 46 ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd------~mdG~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~ 116 (572)
++.+.+++.++.. ...|.|++.-..+. ...|.++++.+. ++|||.+-+. +.+.+.+++.
T Consensus 101 s~~s~e~a~~a~~---~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~-------- 168 (201)
T PRK07695 101 SVHSLEEAIQAEK---NGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLA-------- 168 (201)
T ss_pred eCCCHHHHHHHHH---cCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH--------
Confidence 6677777766544 46788876532221 023677777775 7999988777 7788888888
Q ss_pred cccccCCccEEE
Q 008254 117 DNNFQLGAVEFL 128 (572)
Q Consensus 117 ~~~~~~GA~dYL 128 (572)
.|++++.
T Consensus 169 -----~Ga~gva 175 (201)
T PRK07695 169 -----AGVSGIA 175 (201)
T ss_pred -----cCCCEEE
Confidence 9988774
No 343
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=34.70 E-value=3.4e+02 Score=26.26 Aligned_cols=66 Identities=12% Similarity=0.115 Sum_probs=48.8
Q ss_pred EEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHhhhhccccc
Q 008254 45 STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNF 120 (572)
Q Consensus 45 ~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~ 120 (572)
.-+.+.+|+..+++. .+|+|-++- .+. .|.++++.++ .+|++.+-+. +.+.+.+.++
T Consensus 102 ~gv~t~~e~~~A~~~---Gad~i~~~p-~~~--~g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~------------ 162 (190)
T cd00452 102 PGVATPTEIMQALEL---GADIVKLFP-AEA--VGPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLA------------ 162 (190)
T ss_pred CCcCCHHHHHHHHHC---CCCEEEEcC-Ccc--cCHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHH------------
Confidence 356689999888765 689988742 333 4888888886 5787777666 7788888888
Q ss_pred cCCccEEEeC
Q 008254 121 QLGAVEFLRK 130 (572)
Q Consensus 121 ~~GA~dYL~K 130 (572)
.|++...+-
T Consensus 163 -~G~~~v~v~ 171 (190)
T cd00452 163 -AGVVAVGGG 171 (190)
T ss_pred -CCCEEEEEc
Confidence 897776543
No 344
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=34.68 E-value=1.2e+02 Score=31.61 Aligned_cols=59 Identities=8% Similarity=0.229 Sum_probs=36.7
Q ss_pred hHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHH
Q 008254 79 SFKFLETAK----DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHV 144 (572)
Q Consensus 79 G~~lLe~Ir----dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~V 144 (572)
.|++++++| ++|+|+||=+...-. -++ .+++..+-+.|+++.|+-.+..++....+..+
T Consensus 76 ~~~~~~~~r~~~~~~p~vlm~Y~N~i~~--~G~-----e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 76 VFELVREIREKDPTIPIVLMTYYNPIFQ--YGV-----ERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHhh--cCH-----HHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 377777776 689998885432110 011 12333333499999999888888877744433
No 345
>PLN02823 spermine synthase
Probab=34.51 E-value=1.1e+02 Score=33.07 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=40.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-----CCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAM-----DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS 74 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~-----gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mP 74 (572)
..+|.+||=|+.+.+..+..+... +-++. ...|+.+.|+.. +..||+||+|+.-|
T Consensus 127 ~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~---~~~yDvIi~D~~dp 187 (336)
T PLN02823 127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR---DEKFDVIIGDLADP 187 (336)
T ss_pred CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC---CCCccEEEecCCCc
Confidence 458999999999999999888542 12343 567777766542 25799999997554
No 346
>PRK04302 triosephosphate isomerase; Provisional
Probab=34.51 E-value=4.6e+02 Score=26.14 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=46.6
Q ss_pred HHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCC--C----C----CCCChHHHHHHhc----CCcEEEEeCCCChH
Q 008254 37 LEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVT--T----S----NTDGSFKFLETAK----DLPTIITSNIHCLS 101 (572)
Q Consensus 37 L~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~--m----P----d~mdG~~lLe~Ir----dlPVIiLS~~~d~~ 101 (572)
....|..+. .+.+.+++.. +.+ ..+|+|-..-. + . ....-.++++.++ ++|||.-.+....+
T Consensus 110 a~~~Gl~~I~~v~~~~~~~~-~~~--~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e 186 (223)
T PRK04302 110 AKKLGLESVVCVNNPETSAA-AAA--LGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGE 186 (223)
T ss_pred HHHCCCeEEEEcCCHHHHHH-Hhc--CCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHH
Confidence 334577655 4445455544 444 45676654311 1 1 0001233444454 68999888888889
Q ss_pred HHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 102 TMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 102 ~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
.+..+.. .||+++++-
T Consensus 187 ~~~~~~~-------------~gadGvlVG 202 (223)
T PRK04302 187 DVKAALE-------------LGADGVLLA 202 (223)
T ss_pred HHHHHHc-------------CCCCEEEEe
Confidence 8888888 999999875
No 347
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=34.43 E-value=3.1e+02 Score=23.78 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=49.2
Q ss_pred EEEEEeC--CHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEE-EeCCCCCCCChHHHHHHhc--CCcEEE
Q 008254 19 RVLLLDQ--DSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAI-VEVTTSNTDGSFKFLETAK--DLPTII 93 (572)
Q Consensus 19 RVLVVDD--D~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVI-vDv~mPd~mdG~~lLe~Ir--dlPVIi 93 (572)
+|+++.. .......+...|...|+.+....+..+.......- ..-|++| +...--. .+..++++.++ .+++|+
T Consensus 15 ~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iS~~g~~-~~~~~~~~~a~~~g~~iv~ 92 (139)
T cd05013 15 RIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANL-TPGDVVIAISFSGET-KETVEAAEIAKERGAKVIA 92 (139)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcC-CCCCEEEEEeCCCCC-HHHHHHHHHHHHcCCeEEE
Confidence 5555554 44566667788888888888777776666544321 1224444 3332222 34566666665 799999
Q ss_pred EeCCCCh
Q 008254 94 TSNIHCL 100 (572)
Q Consensus 94 LS~~~d~ 100 (572)
+|+..+.
T Consensus 93 iT~~~~~ 99 (139)
T cd05013 93 ITDSANS 99 (139)
T ss_pred EcCCCCC
Confidence 9998763
No 348
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=34.16 E-value=1.2e+02 Score=25.88 Aligned_cols=56 Identities=16% Similarity=0.152 Sum_probs=41.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHhhcCCCCeeEEEEeCCCC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IV-STFYNENEALSAFSDKPENFHVAIVEVTTS 74 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V-~ta~~a~EAL~~L~e~~~~pDLVIvDv~mP 74 (572)
..+|..+|=++...+..+..+...+. .+ ....+..+....+.. ..+|+||+|.-..
T Consensus 23 ~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 23 AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD--GKFDLIVTNPPYG 81 (117)
T ss_dssp TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT--T-EEEEEE--STT
T ss_pred CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC--ceeEEEEECCCCc
Confidence 36899999999999999999988754 33 366677777666666 7899999987443
No 349
>PLN02949 transferase, transferring glycosyl groups
Probab=34.06 E-value=2.6e+02 Score=31.22 Aligned_cols=109 Identities=7% Similarity=0.008 Sum_probs=66.0
Q ss_pred ccEEEEEeCC-----HHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc
Q 008254 17 GLRVLLLDQD-----SSAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (572)
Q Consensus 17 ~lRVLVVDDD-----~~~~~~L~~lL~~~gy--~V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir 87 (572)
.++.+|+.+- ....+.|+.+.++.+. .|.... +.++-.+.++. .|+++. ..... .-|+-++|.+.
T Consensus 303 ~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~----a~~~v~-~s~~E-~FGivvlEAMA 376 (463)
T PLN02949 303 RPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGG----AVAGLH-SMIDE-HFGISVVEYMA 376 (463)
T ss_pred CcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHh----CcEEEe-CCccC-CCChHHHHHHH
Confidence 4688888763 3455677887777653 354433 34555566665 366663 33334 45788888886
Q ss_pred -CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 88 -DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 88 -dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
.+|||.....+-...+..-.. .|..+|+.. +.+++.+++.+++.
T Consensus 377 ~G~PVIa~~~gGp~~eIV~~~~-------------~g~tG~l~~--~~~~la~ai~~ll~ 421 (463)
T PLN02949 377 AGAVPIAHNSAGPKMDIVLDED-------------GQQTGFLAT--TVEEYADAILEVLR 421 (463)
T ss_pred cCCcEEEeCCCCCcceeeecCC-------------CCcccccCC--CHHHHHHHHHHHHh
Confidence 788887654332212111001 356677763 88999998888775
No 350
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=33.83 E-value=1.8e+02 Score=28.12 Aligned_cols=63 Identities=14% Similarity=0.080 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~------a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
.+...+...++..||.+..+.. ..++++.+.. ..+|-||+.-.... -+++..+. .+|||++..
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiii~~~~~~----~~~~~~~~~~~ipvv~~~~ 86 (268)
T cd01575 16 DVLQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLS--RRPAGLILTGLEHT----ERTRQLLRAAGIPVVEIMD 86 (268)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHH--cCCCEEEEeCCCCC----HHHHHHHHhcCCCEEEEec
Confidence 3446677778888998875433 2456677766 67897777533222 23444443 789998843
No 351
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=33.81 E-value=5.1e+02 Score=29.06 Aligned_cols=55 Identities=25% Similarity=0.296 Sum_probs=32.5
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHHhCCCEEEEEC---CH----HHHHHHhhcCCCCeeEEEEeCC
Q 008254 16 KGLRVLLLDQDSSA---AAELKFKLEAMDYIVSTFY---NE----NEALSAFSDKPENFHVAIVEVT 72 (572)
Q Consensus 16 ~~lRVLVVDDD~~~---~~~L~~lL~~~gy~V~ta~---~a----~EAL~~L~e~~~~pDLVIvDv~ 72 (572)
.+.+|++|+-|..- .+.|+.+-+..+..+..+. +. .++++.+.. ..+|+||+|.-
T Consensus 127 ~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~--~~~DvVIIDTa 191 (428)
T TIGR00959 127 QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKE--NGFDVVIVDTA 191 (428)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCC
Confidence 36789999998532 2333344444454444332 23 345555555 57999999983
No 352
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=33.67 E-value=2e+02 Score=27.71 Aligned_cols=79 Identities=10% Similarity=0.049 Sum_probs=45.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CH---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-NE---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~-~a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---- 87 (572)
++.+|||..-...+...|...|.+.||.|+.+. +. .++...+......+.++.+|+.-+. +-.++++.+.
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~--~~~~~~~~~~~~~~ 82 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRA--ALKAAVAAGVEDFG 82 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHH--HHHHHHHHHHHHhC
Confidence 456899999888888888888888899887554 42 2333444441123444445543322 2334444442
Q ss_pred CCcEEEEeC
Q 008254 88 DLPTIITSN 96 (572)
Q Consensus 88 dlPVIiLS~ 96 (572)
.+-+|+...
T Consensus 83 ~~d~vi~~a 91 (251)
T PRK12826 83 RLDILVANA 91 (251)
T ss_pred CCCEEEECC
Confidence 455555543
No 353
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=33.44 E-value=2.7e+02 Score=22.72 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=44.5
Q ss_pred EEEeCCHHHHHHHHHHHHhC-C-CEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEeCCC
Q 008254 21 LLLDQDSSAAAELKFKLEAM-D-YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNIH 98 (572)
Q Consensus 21 LVVDDD~~~~~~L~~lL~~~-g-y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS~~~ 98 (572)
+|++.-......|+..|++. + ..+....+..+.-.. .. ..+|+||+-+.+.. .+.|||.++..-
T Consensus 5 ivC~~G~~~s~~l~~~l~~~~~~~~~v~~~~~~~~~~~-~~--~~~DlIitT~~l~~-----------~~~pvi~i~~~l 70 (85)
T cd05568 5 VVCPSGIGTSRLLKSKLKKLFPEIEIIDVISLRELEEV-DL--DDYDLIISTVPLED-----------TDKPVIVVSPIL 70 (85)
T ss_pred EECCCCHHHHHHHHHHHHHHCCCceEEEEEeHHHHhhC-cc--cCCCEEEEccccCC-----------CCCCEEEECCCC
Confidence 45556666777888888764 3 333333344443332 23 57999999876553 147999999887
Q ss_pred ChHHHHH
Q 008254 99 CLSTMMK 105 (572)
Q Consensus 99 d~~~~~k 105 (572)
+...+.+
T Consensus 71 ~~~d~~~ 77 (85)
T cd05568 71 TEEDIKK 77 (85)
T ss_pred CHHHHHH
Confidence 6665544
No 354
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=33.28 E-value=2.1e+02 Score=27.10 Aligned_cols=39 Identities=5% Similarity=-0.050 Sum_probs=23.7
Q ss_pred ccEEE--EEeCCHHHHHHHHHHHHhC--CCEEEEECCHHHHHH
Q 008254 17 GLRVL--LLDQDSSAAAELKFKLEAM--DYIVSTFYNENEALS 55 (572)
Q Consensus 17 ~lRVL--VVDDD~~~~~~L~~lL~~~--gy~V~ta~~a~EAL~ 55 (572)
.++|+ +-|.+......+...|... ||.+.....-.+.|+
T Consensus 4 ~~~v~lsv~d~dK~~l~~~a~~l~~ll~Gf~l~AT~gTa~~L~ 46 (142)
T PRK05234 4 RKRIALIAHDHKKDDLVAWVKAHKDLLEQHELYATGTTGGLIQ 46 (142)
T ss_pred CcEEEEEEeccchHHHHHHHHHHHHHhcCCEEEEeChHHHHHH
Confidence 34554 3455556666777777777 888765554444444
No 355
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=33.05 E-value=3.4e+02 Score=25.69 Aligned_cols=63 Identities=14% Similarity=0.156 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 29 AAAELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~a------~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
+...++..++..||.+...... .++++.+.. ..+|.||+....+. ... ++.+. .+|||++...
T Consensus 17 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iii~~~~~~---~~~-~~~~~~~~ipvv~~~~~ 87 (264)
T cd06267 17 LLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLS--RRVDGIILAPSRLD---DEL-LEELAALGIPVVLVDRP 87 (264)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH--cCcCEEEEecCCcc---hHH-HHHHHHcCCCEEEeccc
Confidence 3455666666778877744432 345556666 57898887544333 333 55443 7999988664
No 356
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=33.03 E-value=2.6e+02 Score=30.81 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=50.4
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCC-CCCCCCh--HHHHHHhc--CC
Q 008254 18 LRVLLLDQDSS---AAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVT-TSNTDGS--FKFLETAK--DL 89 (572)
Q Consensus 18 lRVLVVDDD~~---~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~-mPd~mdG--~~lLe~Ir--dl 89 (572)
.+|.+|..|.. ..+.|+.+-+..|..+..+.+..+....+... ..+|+||+|.- +.. .+. .+.+..+. +.
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-~~~DlVLIDTaG~~~-~d~~l~e~La~L~~~~~ 245 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-RNKHMVLIDTIGMSQ-RDRTVSDQIAMLHGADT 245 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-cCCCEEEEcCCCCCc-ccHHHHHHHHHHhccCC
Confidence 47777777665 33445555556676666666555544444432 34799999973 222 222 23344443 33
Q ss_pred c---EEEEeCCCChHHHHHHHH
Q 008254 90 P---TIITSNIHCLSTMMKCIA 108 (572)
Q Consensus 90 P---VIiLS~~~d~~~~~kai~ 108 (572)
+ ++++++....+.+.+.+.
T Consensus 246 ~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 246 PVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred CCeEEEEecCccChHHHHHHHH
Confidence 4 778888776666555444
No 357
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=33.03 E-value=2.2e+02 Score=36.03 Aligned_cols=77 Identities=17% Similarity=0.154 Sum_probs=55.0
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChH-HHHHHhc--
Q 008254 18 LRVLLL----DQDSSAAAELKFKLEAMDYIVSTFY---NENEALSAFSDKPENFHVAIVEVTTSNTDGSF-KFLETAK-- 87 (572)
Q Consensus 18 lRVLVV----DDD~~~~~~L~~lL~~~gy~V~ta~---~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~-~lLe~Ir-- 87 (572)
-+|++. |-+..=...+..+|+..||+|+-.. ..++.++.+.+ ..+|+|-+-..|...+..+ ++++.++
T Consensus 733 gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e--~~~diVgLS~Lmt~t~~~m~~vi~~L~~~ 810 (1178)
T TIGR02082 733 GKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKD--HNADVIGLSGLITPSLDEMKEVAEEMNRR 810 (1178)
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--hCCCEEEEcCcccccHHHHHHHHHHHHhc
Confidence 467776 6677777778888888999998544 67888999998 8999999888776534443 3455554
Q ss_pred --CCcEEEEeC
Q 008254 88 --DLPTIITSN 96 (572)
Q Consensus 88 --dlPVIiLS~ 96 (572)
+++|++=-+
T Consensus 811 g~~v~v~vGGa 821 (1178)
T TIGR02082 811 GITIPLLIGGA 821 (1178)
T ss_pred CCCceEEEecc
Confidence 566655433
No 358
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=32.96 E-value=2.4e+02 Score=27.45 Aligned_cols=64 Identities=9% Similarity=0.078 Sum_probs=40.5
Q ss_pred HHHHHHHHHHh-CCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 29 AAAELKFKLEA-MDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~-~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
+...+...+++ .||.+..+.+ . .+.++.+.. ..+|-+|+.-..++ ...++++.+. .+|+|++..
T Consensus 17 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~--~~~~~~~~l~~~~iPvv~~~~ 89 (272)
T cd06301 17 LRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIA--QGVDAIIVVPVDTA--ATAPIVKAANAAGIPLVYVNR 89 (272)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEecCchh--hhHHHHHHHHHCCCeEEEecC
Confidence 34567777778 8998886543 2 345555555 57898887543322 1235566654 799998855
No 359
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.95 E-value=3e+02 Score=29.16 Aligned_cols=75 Identities=19% Similarity=0.142 Sum_probs=40.7
Q ss_pred ccEEEEEeC-----CHHHHHHHHHHHHhCCCEEEEECCHHHHHH--Hh-hcCCCCeeEEEEeCCCCCCCCh--HHHHHHh
Q 008254 17 GLRVLLLDQ-----DSSAAAELKFKLEAMDYIVSTFYNENEALS--AF-SDKPENFHVAIVEVTTSNTDGS--FKFLETA 86 (572)
Q Consensus 17 ~lRVLVVDD-----D~~~~~~L~~lL~~~gy~V~ta~~a~EAL~--~L-~e~~~~pDLVIvDv~mPd~mdG--~~lLe~I 86 (572)
+.+|++|-. .......+...|++.|++|....+..+... .+ ......+|+||+ + + .|| +..++.+
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~---~-G-GDGT~l~~~~~~ 77 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIV---L-G-GDGTVLAAARHL 77 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEE---E-C-CcHHHHHHHHHh
Confidence 446777632 123455667777788998776543332211 11 111135788887 2 3 355 3444444
Q ss_pred c--CCcEEEEeC
Q 008254 87 K--DLPTIITSN 96 (572)
Q Consensus 87 r--dlPVIiLS~ 96 (572)
. ++||+.+..
T Consensus 78 ~~~~~pv~gin~ 89 (305)
T PRK02645 78 APHDIPILSVNV 89 (305)
T ss_pred ccCCCCEEEEec
Confidence 3 788887753
No 360
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=32.92 E-value=2.2e+02 Score=28.43 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
+...+...+++.||.+..+.. . .++++.+.. ..+|-||+.-.-++ ...+.++.++ .+|||++-.
T Consensus 17 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~--~~vdgiii~~~~~~--~~~~~l~~l~~~~ipvV~~~~ 88 (288)
T cd01538 17 DRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIA--KGVDVLVIAPVDGE--ALASAVEKAADAGIPVIAYDR 88 (288)
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEecCChh--hHHHHHHHHHHCCCCEEEECC
Confidence 445677777788998875543 2 345555555 57998887431111 1245666664 799998854
No 361
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=32.84 E-value=3.7e+02 Score=27.86 Aligned_cols=97 Identities=8% Similarity=0.104 Sum_probs=54.6
Q ss_pred CccEEEEEeC--------CHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHhhcCCCCeeEEEEeCCCCCCCCh-HHHHHH
Q 008254 16 KGLRVLLLDQ--------DSSAAAELKFKLEAMDYIVSTFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLET 85 (572)
Q Consensus 16 ~~lRVLVVDD--------D~~~~~~L~~lL~~~gy~V~ta~-~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG-~~lLe~ 85 (572)
+++||.|+=- .......+...|+..||++..+. +..+.+..+.. ..+|+|+.-++=....+| +.-+-.
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~~~~~~l~~--~~~d~vf~~lhG~~ge~~~i~~~le 79 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLE--LKPDKCFVALHGEDGENGRVSALLE 79 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCchhHHHHhhc--cCCCEEEEeCCCCCCCChHHHHHHH
Confidence 3567777622 22455667888888899988765 34566777777 679999886642210222 111111
Q ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHhhhhccc
Q 008254 86 AKDLPTIITSNIHCLSTMMKCIAIMVMNQLFDN 118 (572)
Q Consensus 86 IrdlPVIiLS~~~d~~~~~kai~~~~~~~~~~~ 118 (572)
...+|++- .+.....-|+....++++|..
T Consensus 80 ~~gip~~G----s~~~a~~l~~DK~~~k~~l~~ 108 (296)
T PRK14569 80 MLEIKHTS----SSMKSSVITMDKMISKEILMH 108 (296)
T ss_pred HcCCCeeC----CCHHHHHHHHCHHHHHHHHHH
Confidence 22677653 223444444444445555543
No 362
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.83 E-value=2e+02 Score=27.95 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---CH---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTFY---NE---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~---~a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
.+...+...+++.||.+..+. +. .++++.+.. ..+|-||+.-...+ . +.++.+. .+|||++-.
T Consensus 16 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~dgiii~~~~~~---~-~~~~~~~~~~iPvv~~~~ 86 (265)
T cd06285 16 TMYEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLD--RRVDGLILGDARSD---D-HFLDELTRRGVPFVLVLR 86 (265)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEecCCCC---h-HHHHHHHHcCCCEEEEcc
Confidence 345677777888899876433 22 255666667 68997777532222 2 3455553 789988754
No 363
>PRK09526 lacI lac repressor; Reviewed
Probab=32.81 E-value=1.9e+02 Score=29.59 Aligned_cols=65 Identities=17% Similarity=0.263 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---C-H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHH-HHHhcCCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTFY---N-E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKF-LETAKDLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~---~-a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~l-Le~IrdlPVIiLS~ 96 (572)
.+...+...+++.||.+..+. + . .+.++.+.. ..+|-||+.... + .+.... +.....+|||++-.
T Consensus 80 ~~~~gi~~~a~~~g~~~~i~~~~~~~~~~~~~~l~~l~~--~~vdGiii~~~~-~-~~~~~~~~~~~~~iPvV~~d~ 152 (342)
T PRK09526 80 QIAAAIKSRADQLGYSVVISMVERSGVEACQAAVNELLA--QRVSGVIINVPL-E-DADAEKIVADCADVPCLFLDV 152 (342)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHh--cCCCEEEEecCC-C-cchHHHHHhhcCCCCEEEEec
Confidence 456778888888899887542 1 1 246667777 688988875322 2 222322 22234799998743
No 364
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=32.74 E-value=1.7e+02 Score=30.91 Aligned_cols=67 Identities=13% Similarity=0.196 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEeCC
Q 008254 27 SSAAAELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNI 97 (572)
Q Consensus 27 ~~~~~~L~~lL~~~gy~V~ta~~a------~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS~~ 97 (572)
..+..++...++..||.+..+... .++++.+.+ ..+|-||+--...+ ..-.+++... .+|+|++...
T Consensus 74 ~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~--~~vdGiIi~~~~~~-~~~~~~l~~~-~~P~V~i~~~ 146 (333)
T COG1609 74 AEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQ--KRVDGLILLGERPN-DSLLELLAAA-GIPVVVIDRS 146 (333)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEecCCCC-HHHHHHHHhc-CCCEEEEeCC
Confidence 446777888888889988865533 356778887 68887776542222 2223333333 7999988764
No 365
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=32.74 E-value=4.1e+02 Score=29.32 Aligned_cols=105 Identities=14% Similarity=0.116 Sum_probs=63.2
Q ss_pred eCCHHHHHHHHHHHHhCCCE----EEEE-----------------------CCHHHHHHHhhcCCCCeeEEEEeCCCCCC
Q 008254 24 DQDSSAAAELKFKLEAMDYI----VSTF-----------------------YNENEALSAFSDKPENFHVAIVEVTTSNT 76 (572)
Q Consensus 24 DDD~~~~~~L~~lL~~~gy~----V~ta-----------------------~~a~EAL~~L~e~~~~pDLVIvDv~mPd~ 76 (572)
+++....+.++..++..||. |... -+.++|++++..--..++++.++=-++.
T Consensus 210 ~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~- 288 (408)
T cd03313 210 SSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDE- 288 (408)
T ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCC-
Confidence 56777788889999887663 3322 2448887766642124788887776665
Q ss_pred CC--hHHHHHHhcCCcEEEEeCC---CChHHHHHHHHHHHhhhhccccccCCc-cEEEeCCCCHHHHHHHHH
Q 008254 77 DG--SFKFLETAKDLPTIITSNI---HCLSTMMKCIAIMVMNQLFDNNFQLGA-VEFLRKPLSEDKLRNLWQ 142 (572)
Q Consensus 77 md--G~~lLe~IrdlPVIiLS~~---~d~~~~~kai~~~~~~~~~~~~~~~GA-~dYL~KPvs~eeL~~~~q 142 (572)
.| |+..|..--..++.++... .+...+.+++. .|+ +.+++|+-..--|..+++
T Consensus 289 ~D~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~-------------~~a~d~v~ik~~~iGGite~~~ 347 (408)
T cd03313 289 DDWEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIE-------------KKAANALLIKVNQIGTLTETIE 347 (408)
T ss_pred cCHHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHH-------------hCCCCEEEEcccccCCHHHHHH
Confidence 33 4444333221244444443 24677777777 665 556678887666666554
No 366
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=32.71 E-value=1.2e+02 Score=29.76 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=34.3
Q ss_pred EEEEEeCC---------HHHHHHHHHHHH-hCCCEEEEECCHHHHHH-HhhcCCCCeeEEEEeCCCC
Q 008254 19 RVLLLDQD---------SSAAAELKFKLE-AMDYIVSTFYNENEALS-AFSDKPENFHVAIVEVTTS 74 (572)
Q Consensus 19 RVLVVDDD---------~~~~~~L~~lL~-~~gy~V~ta~~a~EAL~-~L~e~~~~pDLVIvDv~mP 74 (572)
||||+... +.....|..+|+ ..+|+|+...+....-. .| ..+|+||+.....
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L----~~~Dvvv~~~~~~ 63 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENL----KGYDVVVFYNTGG 63 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCH----CT-SEEEEE-SSC
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHh----cCCCEEEEECCCC
Confidence 67887766 257788999998 67899997776332211 23 3599999888764
No 367
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.69 E-value=4e+02 Score=28.32 Aligned_cols=100 Identities=11% Similarity=0.092 Sum_probs=56.5
Q ss_pred ccEEEEEe--CCHH---HHHHHHHHHHhCCCEEEEECCHHH---HHHH---------hhcCCCCeeEEEEeCCCCCCCCh
Q 008254 17 GLRVLLLD--QDSS---AAAELKFKLEAMDYIVSTFYNENE---ALSA---------FSDKPENFHVAIVEVTTSNTDGS 79 (572)
Q Consensus 17 ~lRVLVVD--DD~~---~~~~L~~lL~~~gy~V~ta~~a~E---AL~~---------L~e~~~~pDLVIvDv~mPd~mdG 79 (572)
+.+|+|+- +.+. ....|...|++.|+.|........ ++.. .......+|+||+ +- .||
T Consensus 5 ~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~---lG--GDG 79 (296)
T PRK04539 5 FHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAV---LG--GDG 79 (296)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEE---EC--CcH
Confidence 34588873 2233 355566667777888775432111 1100 0110024677776 22 355
Q ss_pred --HHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 80 --FKFLETAK--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 80 --~~lLe~Ir--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
+..++.+. ++||+=+. .|=.+||. .++.+++...++.+++..
T Consensus 80 T~L~aa~~~~~~~~PilGIN--------------------------~G~lGFL~-~~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 80 TFLSVAREIAPRAVPIIGIN--------------------------QGHLGFLT-QIPREYMTDKLLPVLEGK 125 (296)
T ss_pred HHHHHHHHhcccCCCEEEEe--------------------------cCCCeEee-ccCHHHHHHHHHHHHcCC
Confidence 23333332 67877543 67788888 588999999888888754
No 368
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=32.60 E-value=1.9e+02 Score=28.01 Aligned_cols=62 Identities=11% Similarity=0.037 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
+...++..+++.||.+..+.+ . .++++.+.+ ..+|.||+.-. . .+ -++++.+. .+|+|++..
T Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~--~-~~-~~~~~~l~~~~ipvV~~~~ 86 (268)
T cd06298 17 LARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLA--KQVDGIIFMGG--K-IS-EEHREEFKRSPTPVVLAGS 86 (268)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHH--hcCCEEEEeCC--C-Cc-HHHHHHHhcCCCCEEEEcc
Confidence 345666777788998764432 2 345555556 67888886421 1 11 23455553 799998854
No 369
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=32.55 E-value=2.1e+02 Score=27.56 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---CHH---HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTFY---NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~---~a~---EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
.+...++..++..||.+.... +.+ +.++.+.. ..+|.+|+-.... ...+++.++ .+|||++-.
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~~dgii~~~~~~----~~~~~~~~~~~~ipvv~~~~ 86 (259)
T cd01542 16 RTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLAR--QKVDGIILLATTI----TDEHREAIKKLNVPVVVVGQ 86 (259)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh--cCCCEEEEeCCCC----CHHHHHHHhcCCCCEEEEec
Confidence 456677777888899887543 222 34555556 6889888753221 234555554 689998843
No 370
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.51 E-value=2.3e+02 Score=27.65 Aligned_cols=64 Identities=9% Similarity=0.054 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh-cCCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA-KDLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I-rdlPVIiLS~ 96 (572)
.+...+...+++.||.+..+.+ . .+.++.+.. ..+|-||+.....+ .+. +.+.+ ..+|||++-.
T Consensus 16 ~~~~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~--~~~dgiii~~~~~~-~~~--~~~~~~~~~pvV~i~~ 86 (269)
T cd06293 16 ELADAVEEEADARGLSLVLCATRNRPERELTYLRWLDT--NHVDGLIFVTNRPD-DGA--LAKLINSYGNIVLVDE 86 (269)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEeCCCCC-HHH--HHHHHhcCCCEEEECC
Confidence 4667778888888998875532 2 355667777 67998888543333 222 22222 2789998854
No 371
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.51 E-value=2.3e+02 Score=27.67 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEe
Q 008254 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITS 95 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS 95 (572)
+...+...+++.||.+..+.+ . .+++..+.. ..+|.||+.-..++ .....++.+. .+|||++-
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~--~~~dgiii~~~~~~--~~~~~l~~~~~~~ipvV~~~ 87 (277)
T cd06319 17 MGRGVKSKAKALGYDAVELSAENSAKKELENLRTAID--KGVSGIIISPTNSS--AAVTLLKLAAQAKIPVVIAD 87 (277)
T ss_pred HHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHh--cCCCEEEEcCCchh--hhHHHHHHHHHCCCCEEEEe
Confidence 345666677778998876543 2 244555555 57898876432221 1234555553 78998774
No 372
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=32.41 E-value=1.8e+02 Score=28.21 Aligned_cols=65 Identities=11% Similarity=0.097 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
+...+...+++.||.+..+.+ . .++++.+.. ..+|-||+...-+. ...+.++.+. .+|||++-..
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~--~~vdgii~~~~~~~--~~~~~i~~~~~~~ipvV~~~~~ 89 (273)
T cd06305 17 YLAGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIA--QKVDAIIIQHGRAE--VLKPWVKRALDAGIPVVAFDVD 89 (273)
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEecCChh--hhHHHHHHHHHcCCCEEEecCC
Confidence 456677778888998876543 2 245555555 57898887432111 1234556554 7999988653
No 373
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=32.34 E-value=2.1e+02 Score=30.63 Aligned_cols=50 Identities=24% Similarity=0.181 Sum_probs=37.0
Q ss_pred cEEEEEeCCHHH-----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHhhcCCCCeeEEEE
Q 008254 18 LRVLLLDQDSSA-----AAELKFKLEAMDYIVSTFY---------NENEALSAFSDKPENFHVAIV 69 (572)
Q Consensus 18 lRVLVVDDD~~~-----~~~L~~lL~~~gy~V~ta~---------~a~EAL~~L~e~~~~pDLVIv 69 (572)
-|+|||-|.... .+.+...|+..|.++..+. +..++++.+++ ..+|+||.
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa 89 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKK--FNADFVIG 89 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEEEE
Confidence 589999887652 2668888888777666553 35677888888 78999985
No 374
>PRK13719 conjugal transfer transcriptional regulator TraJ; Provisional
Probab=32.28 E-value=29 Score=35.52 Aligned_cols=36 Identities=3% Similarity=-0.024 Sum_probs=31.3
Q ss_pred cCCCChhHHHHHHHHHhcchhhhhhccccccccccc
Q 008254 157 SDSLKPVKESVVSMLHLKLENGESKNEKSENTEYVL 192 (572)
Q Consensus 157 ~~sLt~RE~eVL~ll~~~len~e~~~e~s~~~e~v~ 192 (572)
...||+||.+|++++..|..+++...+......+|.
T Consensus 141 ~~~LS~RE~eVL~Lia~G~SnkEIA~~L~IS~~TVk 176 (217)
T PRK13719 141 KNKVTKYQNDVFILYSFGFSHEYIAQLLNITVGSSK 176 (217)
T ss_pred cCCCCHHHHHHHHHHHCCCCHHHHHHHhCCCHHHHH
Confidence 467999999999999999999999988877766653
No 375
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=32.22 E-value=50 Score=32.17 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=44.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCH-HHHHHHhhcCCCCeeEEEEeCCCCCCCC------hHHHHHHhc-CCcE
Q 008254 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNE-NEALSAFSDKPENFHVAIVEVTTSNTDG------SFKFLETAK-DLPT 91 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a-~EAL~~L~e~~~~pDLVIvDv~mPd~md------G~~lLe~Ir-dlPV 91 (572)
|||||....+--.+..+|++.|+.+.++... .+ +..+.. ..+|.+|+- ++.++ -.++++.+. .+||
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~--~~~~~iils---gGp~~~~~~~~~~~~i~~~~~~~Pi 75 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEID-IDGIEA--LNPTHLVIS---PGPCTPNEAGISLQAIEHFAGKLPI 75 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCC-HHHHhh--CCCCEEEEe---CCCCChHHCcchHHHHHHhcCCCCE
Confidence 8999999999999999999999987755532 22 222333 346666542 22112 134454443 6887
Q ss_pred EEEe
Q 008254 92 IITS 95 (572)
Q Consensus 92 IiLS 95 (572)
+=+.
T Consensus 76 LGIC 79 (193)
T PRK08857 76 LGVC 79 (193)
T ss_pred EEEc
Confidence 7653
No 376
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.22 E-value=2e+02 Score=28.52 Aligned_cols=64 Identities=9% Similarity=0.069 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~------a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
+...+...++..||.+..+.. ..+.++.+.. ..+|-||+...-++ ..-+.++.+. .+|||++-.
T Consensus 17 ~~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~--~~vdgiii~~~~~~--~~~~~i~~~~~~~iPvV~~~~ 88 (272)
T cd06313 17 GKQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMAS--QGWDFIAVDPLGIG--TLTEAVQKAIARGIPVIDMGT 88 (272)
T ss_pred HHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHH--cCCCEEEEcCCChH--HhHHHHHHHHHCCCcEEEeCC
Confidence 456677778888998886543 2345566666 67898888432111 1234555553 799999854
No 377
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=32.22 E-value=45 Score=34.46 Aligned_cols=64 Identities=11% Similarity=0.135 Sum_probs=51.8
Q ss_pred ccEEEEEeCC-HHHHHHHHHHHHhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHH
Q 008254 17 GLRVLLLDQD-SSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFK 81 (572)
Q Consensus 17 ~lRVLVVDDD-~~~~~~L~~lL~~~gy~V~---ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~ 81 (572)
..+|=.|-+. ......|..-|.++||+|. .+++...|.+.+++++.+|-+++-|--+++ .+|++
T Consensus 39 ~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~d-F~gid 106 (262)
T KOG3040|consen 39 HVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALED-FDGID 106 (262)
T ss_pred CceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhh-CCCcc
Confidence 4556666554 4567778888999999887 788999999999998789999999999998 77754
No 378
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=32.19 E-value=2.9e+02 Score=33.44 Aligned_cols=110 Identities=10% Similarity=0.075 Sum_probs=59.7
Q ss_pred cEEEEEeCCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCC--CCCCCChHHHHHHhc-----
Q 008254 18 LRVLLLDQDSSA---AAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVT--TSNTDGSFKFLETAK----- 87 (572)
Q Consensus 18 lRVLVVDDD~~~---~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~--mPd~mdG~~lLe~Ir----- 87 (572)
.+|.+|+-|..- .+.|+.+-+..|..+..+.+..+..+.+... ..+|+||+|.- ++....-.+.+..+.
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~-~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p 294 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL-GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRP 294 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh-cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCC
Confidence 478888877543 2344444455666666667777776666653 45799999972 222012233344432
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCH
Q 008254 88 DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSE 134 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~ 134 (572)
.-.++++++....+.+.+.+. -|..+...+.+++|+-=++.
T Consensus 295 ~e~~LVLsAt~~~~~l~~i~~------~f~~~~~~~i~glIlTKLDE 335 (767)
T PRK14723 295 VRRLLLLNAASHGDTLNEVVH------AYRHGAGEDVDGCIITKLDE 335 (767)
T ss_pred CeEEEEECCCCcHHHHHHHHH------HHhhcccCCCCEEEEeccCC
Confidence 334666666655555544433 12222123566776654443
No 379
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=32.02 E-value=1.6e+02 Score=31.17 Aligned_cols=38 Identities=5% Similarity=-0.039 Sum_probs=25.4
Q ss_pred CCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCCCChH
Q 008254 62 ENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIHCLS 101 (572)
Q Consensus 62 ~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~~d~~ 101 (572)
..+|.|++|+..|+ ..++.++... .+|+|+=|.--+.+
T Consensus 67 ~~~d~VvIDFT~P~--~~~~n~~~~~~~gv~~ViGTTG~~~~ 106 (275)
T TIGR02130 67 KYPELICIDYTHPS--AVNDNAAFYGKHGIPFVMGTTGGDRE 106 (275)
T ss_pred hcCCEEEEECCChH--HHHHHHHHHHHCCCCEEEcCCCCCHH
Confidence 34898999999998 5666666654 57766644433333
No 380
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=32.01 E-value=1.6e+02 Score=25.93 Aligned_cols=74 Identities=15% Similarity=0.096 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCC-CCChHHHHHHhc--CCcEEEEeCCCChH
Q 008254 26 DSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSN-TDGSFKFLETAK--DLPTIITSNIHCLS 101 (572)
Q Consensus 26 D~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd-~mdG~~lLe~Ir--dlPVIiLS~~~d~~ 101 (572)
.......+...|...|+.+....+.+.....+... ..-|++|+ +..++ ..+-.++++.++ +++||.+|+..+..
T Consensus 11 S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~d~vi~-iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 11 SGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMV-TPGDVVIA-ISNSGETDELLNLLPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred hHHHHHHHHHHhhcCCCceEEcccchhhccccCcC-CCCCEEEE-EeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 34466778888888888887666554333222221 22355554 23333 123456666665 89999999987644
No 381
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=32.00 E-value=2.4e+02 Score=27.30 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEECC-------HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeC
Q 008254 27 SSAAAELKFKLEAMDYIVSTFYN-------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSN 96 (572)
Q Consensus 27 ~~~~~~L~~lL~~~gy~V~ta~~-------a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~ 96 (572)
..+...++..+++.||.+..+.. ..+.++.+.. ..+|-||+...... ...+.+... .+|||++-.
T Consensus 15 ~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiii~~~~~~---~~~~~~~~~~~ipvv~~~~ 87 (264)
T cd01574 15 SSTLAAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLA--QRVDGVIVNAPLDD---ADAALAAAPADVPVVFVDG 87 (264)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHh--cCCCEEEEeCCCCC---hHHHHHHHhcCCCEEEEec
Confidence 34677788888888997764321 2345666666 67898887544333 223333333 799998854
No 382
>PRK10481 hypothetical protein; Provisional
Probab=31.97 E-value=2.4e+02 Score=28.93 Aligned_cols=75 Identities=16% Similarity=0.164 Sum_probs=47.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC------CH---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY------NE---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~------~a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I 86 (572)
.+-||-|+-..+.......+.+...||.+.... +. .+|.+.|.. ...|+|++|..-=. +...+.+++.
T Consensus 128 ~g~riGVitP~~~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~--~gaD~Ivl~C~G~~-~~~~~~le~~ 204 (224)
T PRK10481 128 GGHQVGVIVPVEEQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLD--QGADVIVLDCLGYH-QRHRDLLQKA 204 (224)
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhc--CCCCEEEEeCCCcC-HHHHHHHHHH
Confidence 345788888877776666676666798766332 22 223344445 67899999874333 2344555555
Q ss_pred cCCcEEE
Q 008254 87 KDLPTII 93 (572)
Q Consensus 87 rdlPVIi 93 (572)
-.+|||.
T Consensus 205 lg~PVI~ 211 (224)
T PRK10481 205 LDVPVLL 211 (224)
T ss_pred HCcCEEc
Confidence 5889873
No 383
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=31.79 E-value=2e+02 Score=25.98 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=44.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhc-CCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSD-KPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTI 92 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e-~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVI 92 (572)
.+++|.|+.|...+. -++-.|..+..+.+.+++.+.++. ....+.+|++.-++-+ .--+.+++.+ .+|+|
T Consensus 2 ~~~kIaVIGD~dtv~-----GFrLaGi~~~~v~~~ee~~~~i~~l~~~d~gII~Ite~~a~--~i~~~i~~~~~~~~P~I 74 (104)
T PRK01395 2 TMYKIGVVGDKDSIL-----PFKALGIDVFPVIDEQEAINTLRKLAMEDYGIIYITEQIAA--DIPETIERYDNQVLPAI 74 (104)
T ss_pred cceeEEEEECHHHHH-----HHHHcCCeeEEecChHHHHHHHHHHhcCCcEEEEEcHHHHH--HhHHHHHHhcCCCCCEE
Confidence 346899999944332 234457777777777666654443 1157888888655544 1223444444 67887
Q ss_pred EEeCC
Q 008254 93 ITSNI 97 (572)
Q Consensus 93 iLS~~ 97 (572)
+.-..
T Consensus 75 l~IP~ 79 (104)
T PRK01395 75 ILIPS 79 (104)
T ss_pred EEeCC
Confidence 76443
No 384
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.74 E-value=3.7e+02 Score=28.48 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=56.9
Q ss_pred ccEEEEEeC--CHH---HHHHHHHHHHhCCCEEEEECCHHHHHHH-------hhcCCCCeeEEEEeCCCCCCCCh--HHH
Q 008254 17 GLRVLLLDQ--DSS---AAAELKFKLEAMDYIVSTFYNENEALSA-------FSDKPENFHVAIVEVTTSNTDGS--FKF 82 (572)
Q Consensus 17 ~lRVLVVDD--D~~---~~~~L~~lL~~~gy~V~ta~~a~EAL~~-------L~e~~~~pDLVIvDv~mPd~mdG--~~l 82 (572)
+.+|+|+-. .+. ....|...|++.|+++........++.. +.+....+|+||+ +- .|| +..
T Consensus 5 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~---lG--GDGT~L~a 79 (292)
T PRK03378 5 FKCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIV---VG--GDGNMLGA 79 (292)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEE---EC--CcHHHHHH
Confidence 345888733 222 3456666777788888765543332210 0110124677776 22 355 333
Q ss_pred HHHhc--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 83 LETAK--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 83 Le~Ir--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
++.+. ++|||=+- .|=.+||. .++.+++..+++.++...
T Consensus 80 a~~~~~~~~Pilgin--------------------------~G~lGFl~-~~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 80 ARVLARYDIKVIGIN--------------------------RGNLGFLT-DLDPDNALQQLSDVLEGH 120 (292)
T ss_pred HHHhcCCCCeEEEEE--------------------------CCCCCccc-ccCHHHHHHHHHHHHcCC
Confidence 33332 56766442 56667766 678899999888887754
No 385
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=31.74 E-value=4.9e+02 Score=26.38 Aligned_cols=87 Identities=6% Similarity=-0.027 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhCCCEEEEE-C--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCCh------HHHHHHhc----CCcEEEE
Q 008254 28 SAAAELKFKLEAMDYIVSTF-Y--NENEALSAFSDKPENFHVAIVEVTTSNTDGS------FKFLETAK----DLPTIIT 94 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta-~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG------~~lLe~Ir----dlPVIiL 94 (572)
.....+...+++.|..+..+ + +..+.++.+.+ ....++++ -.+|+ ..+ .+.+++++ +.||++=
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~--~~~~~l~m-sv~~~-~g~~~~~~~~~~i~~lr~~~~~~~i~v~ 191 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSK--LSPLFIYY-GLRPA-TGVPLPVSVERNIKRVRNLVGNKYLVVG 191 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH--hCCCEEEE-EeCCC-CCCCchHHHHHHHHHHHHhcCCCCEEEe
Confidence 34456667777777755422 2 22445554444 34456666 44555 222 33444444 4676655
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCC
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKP 131 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KP 131 (572)
.+....+.+.+++. .||+++++--
T Consensus 192 gGI~~~e~i~~~~~-------------~gaD~vvvGS 215 (244)
T PRK13125 192 FGLDSPEDARDALS-------------AGADGVVVGT 215 (244)
T ss_pred CCcCCHHHHHHHHH-------------cCCCEEEECH
Confidence 55557788888888 9999999863
No 386
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=31.69 E-value=1.2e+02 Score=29.51 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=45.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEE--------------EECCHHHHHHHhhc--CCCCeeEEEEeCCC-CCCCC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVS--------------TFYNENEALSAFSD--KPENFHVAIVEVTT-SNTDG 78 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~--------------ta~~a~EAL~~L~e--~~~~pDLVIvDv~m-Pd~md 78 (572)
+++||||+..--.+.+.+.+.|+...+.+. ++-........+.. ....+|+||+|=.- -| -.
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~D-p~ 110 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTD-PT 110 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--S-HH
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHHHHHhcCcccccCccEEEEeccccCC-HH
Confidence 578999999999999999999997654221 11111223333322 12469999999633 23 12
Q ss_pred hHHHHHHhc------CCcEEEEeCCC
Q 008254 79 SFKFLETAK------DLPTIITSNIH 98 (572)
Q Consensus 79 G~~lLe~Ir------dlPVIiLS~~~ 98 (572)
.+.+.-.++ ...+|++|+..
T Consensus 111 sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 111 SIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred HHhhheeHHHhhhccCeeEEEEeCCC
Confidence 222222222 46899998864
No 387
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=31.62 E-value=2.6e+02 Score=30.18 Aligned_cols=50 Identities=12% Similarity=0.192 Sum_probs=36.1
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCEEEEECC---------HHHHHHHhhcCCCCeeEEEE
Q 008254 18 LRVLLLDQDSSA----AAELKFKLEAMDYIVSTFYN---------ENEALSAFSDKPENFHVAIV 69 (572)
Q Consensus 18 lRVLVVDDD~~~----~~~L~~lL~~~gy~V~ta~~---------a~EAL~~L~e~~~~pDLVIv 69 (572)
-|+|||-|.... .+.+...|+..|..+..+.. .+++++.+++ ..+|+||-
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa 91 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKK--EGCDFIIS 91 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHh--cCCCEEEE
Confidence 489999876543 45677888877776665543 5677778887 78999984
No 388
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=31.59 E-value=4.3e+02 Score=28.60 Aligned_cols=112 Identities=10% Similarity=0.041 Sum_probs=60.1
Q ss_pred cEEEEEeCC-HHHHHHHHHHHHhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEE
Q 008254 18 LRVLLLDQD-SSAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (572)
Q Consensus 18 lRVLVVDDD-~~~~~~L~~lL~~~gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIi 93 (572)
++++|+.+- ....+.++.+.+...-.+. ...+.+++-.++.. .|++|+=-. -. .-|+..++.+. .+|+|+
T Consensus 326 ~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----aDv~l~pS~-~E-~~gl~~lEAma~G~pvI~ 399 (476)
T cd03791 326 GQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAG----ADFFLMPSR-FE-PCGLTQMYAMRYGTVPIV 399 (476)
T ss_pred cEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHh----CCEEECCCC-CC-CCcHHHHHHhhCCCCCEE
Confidence 566666653 3445555555554322222 23333333334443 577775222 22 34666777776 788775
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
....+-.+++.... .......+|+..|-+.++|.+++..++.
T Consensus 400 ~~~gg~~e~v~~~~-----------~~~~~~~G~~~~~~~~~~l~~~i~~~l~ 441 (476)
T cd03791 400 RATGGLADTVIDYN-----------EDTGEGTGFVFEGYNADALLAALRRALA 441 (476)
T ss_pred CcCCCccceEeCCc-----------CCCCCCCeEEeCCCCHHHHHHHHHHHHH
Confidence 43322222211100 0002338999999999999998888765
No 389
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=31.58 E-value=3e+02 Score=26.38 Aligned_cols=80 Identities=13% Similarity=-0.019 Sum_probs=49.7
Q ss_pred HHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCC------CCChHHHHHHhc---CCcEEEEeCCCChHHH
Q 008254 33 LKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSN------TDGSFKFLETAK---DLPTIITSNIHCLSTM 103 (572)
Q Consensus 33 L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd------~mdG~~lLe~Ir---dlPVIiLS~~~d~~~~ 103 (572)
.+.++......=.++.+.+|+..+.+. .+|.|++----+. ..-|++.++.+. .+||+.+-+.. .+.+
T Consensus 88 ~r~~~~~~~~ig~S~h~~~e~~~a~~~---g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI~-~~~i 163 (180)
T PF02581_consen 88 ARKLLGPDKIIGASCHSLEEAREAEEL---GADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGIT-PENI 163 (180)
T ss_dssp HHHHHTTTSEEEEEESSHHHHHHHHHC---TTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTH
T ss_pred hhhhcccceEEEeecCcHHHHHHhhhc---CCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCCC-HHHH
Confidence 344444333333489999997766644 6798887765332 013788777775 79999998764 4556
Q ss_pred HHHHHHHHhhhhccccccCCccEEEe
Q 008254 104 MKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 104 ~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
..+.+ .||+++-+
T Consensus 164 ~~l~~-------------~Ga~gvAv 176 (180)
T PF02581_consen 164 PELRE-------------AGADGVAV 176 (180)
T ss_dssp HHHHH-------------TT-SEEEE
T ss_pred HHHHH-------------cCCCEEEE
Confidence 66666 89888753
No 390
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=31.58 E-value=1.9e+02 Score=29.59 Aligned_cols=65 Identities=11% Similarity=0.128 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS~ 96 (572)
+...+...++..||.+..+.+ . .+.++.+.. ..+|-||+-..... ..-++.+.....+|+|++-.
T Consensus 77 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~-~~~~~~l~~~~~iPvV~~d~ 147 (341)
T PRK10703 77 IIEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQ--KRVDGLLVMCSEYP-EPLLAMLEEYRHIPMVVMDW 147 (341)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEecCCCC-HHHHHHHHhcCCCCEEEEec
Confidence 446677777788998876542 2 245666666 67897776432112 12233333224789998753
No 391
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=31.50 E-value=2.3e+02 Score=30.14 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=44.2
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCCEEE--------EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHH
Q 008254 17 GLRVLLLDQDSS---AAAELKFKLEAMDYIVS--------TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLET 85 (572)
Q Consensus 17 ~lRVLVVDDD~~---~~~~L~~lL~~~gy~V~--------ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~ 85 (572)
+-|+|||-|... ..+.+...|+..|..+. +..+..++++.+++ .++|+||. +-+ ..-++..+.
T Consensus 22 ~~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIa---vGG-GS~iD~aK~ 95 (351)
T cd08170 22 GKRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARD--NGADVVIG---IGG-GKTLDTAKA 95 (351)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhh--cCCCEEEE---ecC-chhhHHHHH
Confidence 358999987654 33445555665555432 22356677788888 78999885 333 233444333
Q ss_pred ---hcCCcEEEEe
Q 008254 86 ---AKDLPTIITS 95 (572)
Q Consensus 86 ---IrdlPVIiLS 95 (572)
+..+|+|.+-
T Consensus 96 ia~~~~~P~iaIP 108 (351)
T cd08170 96 VADYLGAPVVIVP 108 (351)
T ss_pred HHHHcCCCEEEeC
Confidence 3478888764
No 392
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=31.35 E-value=1.6e+02 Score=35.73 Aligned_cols=117 Identities=16% Similarity=0.276 Sum_probs=79.0
Q ss_pred ccccccccccc----CCCCccEEEEEeCCHHHHHHHHHHHHhC--CCEEE-----EECCHHHHHHHhhcCCCCeeEEEEe
Q 008254 2 VCTANDLSAWK----DFPKGLRVLLLDQDSSAAAELKFKLEAM--DYIVS-----TFYNENEALSAFSDKPENFHVAIVE 70 (572)
Q Consensus 2 ~~~an~~s~~~----~~p~~lRVLVVDDD~~~~~~L~~lL~~~--gy~V~-----ta~~a~EAL~~L~e~~~~pDLVIvD 70 (572)
||-+..+..|. .|=..++|+----....|+.|+..+... +|+|. .+.+..+-..+|+. ..|++||.|
T Consensus 454 VvPsSTleNWlrEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~--~~~n~viyD 531 (941)
T KOG0389|consen 454 VVPSSTLENWLREFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKN--QKFNYVIYD 531 (941)
T ss_pred EecchhHHHHHHHHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHh--ccccEEEec
Confidence 45566666663 3545689999999999999999999986 78665 23455666778888 899999998
Q ss_pred C-CCCCCCChHHHHH--HhcCCcEEEEeCCC---ChHHHHHHHHHHHhhhhcccccc
Q 008254 71 V-TTSNTDGSFKFLE--TAKDLPTIITSNIH---CLSTMMKCIAIMVMNQLFDNNFQ 121 (572)
Q Consensus 71 v-~mPd~mdG~~lLe--~IrdlPVIiLS~~~---d~~~~~kai~~~~~~~~~~~~~~ 121 (572)
- +|-..+....+-. .|..-..|++|+.. ++...+..+. .||+++|+...+
T Consensus 532 EgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~-FvlP~vF~~~~~ 587 (941)
T KOG0389|consen 532 EGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLA-FVLPKVFDSSME 587 (941)
T ss_pred chhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHH-HHhhHhhhccch
Confidence 6 4432144433322 22334567788864 4555556666 688998887655
No 393
>PLN02591 tryptophan synthase
Probab=31.19 E-value=1.5e+02 Score=30.75 Aligned_cols=60 Identities=10% Similarity=0.185 Sum_probs=39.7
Q ss_pred ChHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHH
Q 008254 78 GSFKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHV 144 (572)
Q Consensus 78 dG~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~V 144 (572)
+.|++++++| ++|+|+||=+...-. -++ .+++..+-+.|+++.|+-.+..+|.......+
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~--~G~-----~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~ 127 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILK--RGI-----DKFMATIKEAGVHGLVVPDLPLEETEALRAEA 127 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHH--hHH-----HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 3577888886 689998876543211 122 23444455599999999999988888744433
No 394
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=31.01 E-value=1.6e+02 Score=29.37 Aligned_cols=65 Identities=11% Similarity=0.006 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCEEEEECC-----HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN-----ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~-----a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS~ 96 (572)
+...+...+++.||.+..+.. ..+.++.+.. ..+|-||+--...+ ..-.++++...++|+|++..
T Consensus 20 ~~~gi~~~~~~~gy~~~i~~~~~~~~~~~~i~~l~~--~~vdgiI~~~~~~~-~~~~~~~~~~~~~PiV~i~~ 89 (265)
T cd06354 20 AWEGLERAAKELGIEYKYVESKSDADYEPNLEQLAD--AGYDLIVGVGFLLA-DALKEVAKQYPDQKFAIIDA 89 (265)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHh--CCCCEEEEcCcchH-HHHHHHHHHCCCCEEEEEec
Confidence 455677777888998776532 2355666666 68888887321111 11122333333789988854
No 395
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.97 E-value=2.9e+02 Score=26.63 Aligned_cols=63 Identities=21% Similarity=0.220 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
+...++..+++.||.+..+.+ . .+.++.+.. ..+|.||+--..+ +..+.++.+. .+|+|++-.
T Consensus 17 ~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~--~~vdgiii~~~~~---~~~~~~~~~~~~~ipvV~~~~ 87 (268)
T cd06289 17 LAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLE--HGVAGIILCPAAG---TSPDLLKRLAESGIPVVLVAR 87 (268)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHH--cCCCEEEEeCCCC---ccHHHHHHHHhcCCCEEEEec
Confidence 556777888888998876542 2 234555666 5788877754322 3345566664 789998854
No 396
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=30.93 E-value=3.3e+02 Score=30.59 Aligned_cols=54 Identities=22% Similarity=0.359 Sum_probs=31.7
Q ss_pred ccEEEEEeCCHHHHHHHHH---HHHhCCCEEEEEC---C----HHHHHHHhhcCCCCeeEEEEeCC
Q 008254 17 GLRVLLLDQDSSAAAELKF---KLEAMDYIVSTFY---N----ENEALSAFSDKPENFHVAIVEVT 72 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~---lL~~~gy~V~ta~---~----a~EAL~~L~e~~~~pDLVIvDv~ 72 (572)
+.+|+||+-|..-...... +-+..+..+.... + +.++++.++. ..+|+||+|.-
T Consensus 128 G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~--~~~DvViIDTa 191 (429)
T TIGR01425 128 GFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK--ENFDIIIVDTS 191 (429)
T ss_pred CCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh--CCCCEEEEECC
Confidence 5689999888654333322 2223344333322 2 2356666666 67999999983
No 397
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=30.84 E-value=75 Score=32.63 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=39.6
Q ss_pred ccccccccccCCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhc---CCCCeeEEEEeCC
Q 008254 3 CTANDLSAWKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSD---KPENFHVAIVEVT 72 (572)
Q Consensus 3 ~~an~~s~~~~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e---~~~~pDLVIvDv~ 72 (572)
+-||++-.|+..|. .|...++..+..-.|..-...-.++|+..+++ .....|++|+|+.
T Consensus 24 ve~~n~~~~~~vp~-----------~c~~~v~~Y~~~~~Y~~D~~~v~~~a~~y~~~~~~~~dg~~A~V~DID 85 (229)
T TIGR01675 24 VETNNIRDWDTVPA-----------ECKDYVEDYMTSKQYKRDVKRVVDEAYFYAKSLALSGDGMDAWIFDVD 85 (229)
T ss_pred hhhccccccccCcH-----------HHHHHHHHhhcccccHHHHHHHHHHHHHHHHHhhccCCCCcEEEEccc
Confidence 34677788887774 57777777776667765555555566655542 1256799999986
No 398
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=30.82 E-value=1.5e+02 Score=28.62 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~---a~---EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
.+...+...+++.||.+..+.. .+ +.++.+.. ..+|-||+...... . ..++.+. .+|+|++-..
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~---~-~~~~~l~~~~ipvV~~~~~ 87 (265)
T cd06299 16 SLATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLS--QRVDGIIVVPHEQS---A-EQLEDLLKRGIPVVFVDRE 87 (265)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh--cCCCEEEEcCCCCC---h-HHHHHHHhCCCCEEEEecc
Confidence 3556777778888998886542 22 34556666 68998887543222 2 3355553 7999988653
No 399
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=30.76 E-value=2.3e+02 Score=27.92 Aligned_cols=62 Identities=10% Similarity=0.006 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCCEEEEECC-----HHHHHH-HhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN-----ENEALS-AFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~-----a~EAL~-~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
....+...+++.||.+..+.. ..+++. .+.. ..+|-||+.-..++ .+.++.++ .+|||++-.
T Consensus 17 ~~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~--~~vdgvi~~~~~~~----~~~~~~l~~~~iPvv~~~~ 86 (269)
T cd06297 17 LLEGIEGALLEQRYDLALFPLLSLARLKRYLESTTLA--YLTDGLLLASYDLT----ERLAERRLPTERPVVLVDA 86 (269)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHh--cCCCEEEEecCccC----hHHHHHHhhcCCCEEEEcc
Confidence 445667777778998775431 234453 4555 67887777543333 24455554 789998854
No 400
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=30.74 E-value=3.2e+02 Score=25.75 Aligned_cols=66 Identities=12% Similarity=0.154 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIH 98 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~------a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~~ 98 (572)
.+..+++..++..||.+....+ ..++++.+.. ..+|.||+-...+. .- ..+..+. .+|+|++....
T Consensus 16 ~~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~--~~~d~ii~~~~~~~--~~-~~~~~l~~~~ip~v~~~~~~ 89 (264)
T cd01537 16 QVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIA--RGVDGIIIAPSDLT--AP-TIVKLARKAGIPVVLVDRDI 89 (264)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEecCCCc--ch-hHHHHhhhcCCCEEEeccCC
Confidence 4567778888888998775543 2455555555 56887777543333 11 1455553 79999886653
No 401
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=30.69 E-value=3.5e+02 Score=29.68 Aligned_cols=69 Identities=10% Similarity=0.017 Sum_probs=42.6
Q ss_pred eeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHH
Q 008254 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQ 142 (572)
Q Consensus 64 pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q 142 (572)
.+.+|++..-..++---.++..+. ...+|... .+.+.+.-++. ++|.|+++.+++|-+..+|+....
T Consensus 89 ~~~viv~~~dW~iIPlEnlIA~~~~~~~l~a~v--~~~~eA~~a~~----------~LE~G~dGVvl~~~d~~ei~~~~~ 156 (344)
T PRK02290 89 VDYVIVEGRDWTIIPLENLIADLGQSGKIIAGV--ADAEEAKLALE----------ILEKGVDGVLLDPDDPNEIKAIVA 156 (344)
T ss_pred CCEEEEECCCCcEecHHHHHhhhcCCceEEEEe--CCHHHHHHHHH----------HhccCCCeEEECCCCHHHHHHHHH
Confidence 477777766554223333555553 34444433 33444444444 456999999999999999998555
Q ss_pred HH
Q 008254 143 HV 144 (572)
Q Consensus 143 ~V 144 (572)
.+
T Consensus 157 ~~ 158 (344)
T PRK02290 157 LI 158 (344)
T ss_pred HH
Confidence 43
No 402
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=30.67 E-value=1.1e+02 Score=30.36 Aligned_cols=45 Identities=13% Similarity=0.074 Sum_probs=36.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIV 69 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~e~~~~pDLVIv 69 (572)
+|+|.|||--.-....+...|++.|+ ++....+.+++ . .+|.||+
T Consensus 1 ~~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~l----~----~~d~lIl 47 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAV----A----AADRVVL 47 (209)
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHHh----c----CCCEEEE
Confidence 46999999888888899999999998 77777776662 2 4788886
No 403
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=30.67 E-value=2.1e+02 Score=27.51 Aligned_cols=87 Identities=10% Similarity=0.135 Sum_probs=54.8
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHhhcCCCCeeEEEEeCCCCCC----CChHHHHHHhc------CCcEEEEeCCCC
Q 008254 32 ELKFKLEAMDYIVST--FYNENEALSAFSDKPENFHVAIVEVTTSNT----DGSFKFLETAK------DLPTIITSNIHC 99 (572)
Q Consensus 32 ~L~~lL~~~gy~V~t--a~~a~EAL~~L~e~~~~pDLVIvDv~mPd~----mdG~~lLe~Ir------dlPVIiLS~~~d 99 (572)
.....|+..||.+.. +..+..-+..+.. ..+|.|-+|..+-.. .....+++.+. .+.| +.++-++
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~--l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v-ia~gVe~ 213 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKR--LPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQV-VAEGVET 213 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHh--CCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeE-EEecCCC
Confidence 445667778987764 5666777788887 679999999754320 11334455442 4554 4566677
Q ss_pred hHHHHHHHHHHHhhhhccccccCCcc---E-EEeCCCCH
Q 008254 100 LSTMMKCIAIMVMNQLFDNNFQLGAV---E-FLRKPLSE 134 (572)
Q Consensus 100 ~~~~~kai~~~~~~~~~~~~~~~GA~---d-YL~KPvs~ 134 (572)
.+....+.. +|++ + |+-||...
T Consensus 214 ~~~~~~l~~-------------~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 214 PEQLDLLRS-------------LGCDYGQGYLFSRPLPL 239 (241)
T ss_pred HHHHHHHHH-------------cCCCEEeeceeccCCCC
Confidence 777766666 7775 3 45677653
No 404
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=30.64 E-value=4e+02 Score=29.74 Aligned_cols=100 Identities=15% Similarity=0.169 Sum_probs=61.7
Q ss_pred CccEEEEEeC---CHHHH-HHHHHHHHhC-CCEE--EEECCHHHHHHHhhcCCCCeeEEEEeCCC------CCC----CC
Q 008254 16 KGLRVLLLDQ---DSSAA-AELKFKLEAM-DYIV--STFYNENEALSAFSDKPENFHVAIVEVTT------SNT----DG 78 (572)
Q Consensus 16 ~~lRVLVVDD---D~~~~-~~L~~lL~~~-gy~V--~ta~~a~EAL~~L~e~~~~pDLVIvDv~m------Pd~----md 78 (572)
.++.+++||- +.... +.++.+-+.. +-.| ..+.+.++|..++.. .+|.|.+-+.- ... ..
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a---Gad~i~vg~g~G~~~~t~~~~~~g~p 311 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA---GADGLRVGIGPGSICTTRIVAGVGVP 311 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh---CCCEEEECCCCCcCCccceecCCCcc
Confidence 4678888887 44333 3333333332 2232 267888888888776 57877554310 000 01
Q ss_pred hHHHHHHh----c--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCC
Q 008254 79 SFKFLETA----K--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKP 131 (572)
Q Consensus 79 G~~lLe~I----r--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KP 131 (572)
.+.++..+ + ++|||.--+......+.+|+. +||+...+=-
T Consensus 312 ~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla-------------~GA~~V~~G~ 357 (450)
T TIGR01302 312 QITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALA-------------AGADAVMLGS 357 (450)
T ss_pred HHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHH-------------cCCCEEEECc
Confidence 13333333 2 689888778889999999999 9999988743
No 405
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=30.56 E-value=5.7 Score=38.56 Aligned_cols=109 Identities=13% Similarity=0.100 Sum_probs=68.6
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC----EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDY----IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-- 87 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy----~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-- 87 (572)
++..+. +.+|++...+..+..++....+ ....+....+....... ..+|+++.++.|++ +.++.++..+.
T Consensus 13 ~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 88 (340)
T KOG1601|consen 13 FDDLLN-LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESFVAATS--FSIDLSVPSLDMPG-LEGFSLFVSENNP 88 (340)
T ss_pred cccccc-cccccccCCcccccccccccccccccccccccchhhhhhcccc--cccccccccccccc-ccccccccccccC
Confidence 344444 7788887777776666665422 12222222221111111 35799999999999 89999888774
Q ss_pred ----CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHH
Q 008254 88 ----DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRN 139 (572)
Q Consensus 88 ----dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~ 139 (572)
+.++++++...........+. .|+.+|+.+|+...++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~p~~~~~~~~ 131 (340)
T KOG1601|consen 89 NSLRHPPVPSMPSSNSSSSSSSSVS-------------PSASLELTKPDRKNRLKR 131 (340)
T ss_pred CCCCCCCcccccccccchhhhcccC-------------CcccccccccccCCCccc
Confidence 566666666555555555555 789999999997444444
No 406
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=30.50 E-value=1.5e+02 Score=20.91 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=32.0
Q ss_pred eecCHHHHHHHHHHHHHhCCCCCCCHHHHhhhCCCCCCHHHHHHhhhh
Q 008254 333 VDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQK 380 (572)
Q Consensus 333 ~~Wt~eLh~~Fv~av~~lG~~~a~Pk~il~lM~v~glt~~~v~SHLQk 380 (572)
-.||++=...|+.++.++|. ..=+.|-+.|+ +=|...|+.+...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~--~~w~~Ia~~~~--~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGK--NNWEKIAKELP--GRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCc--CCHHHHHHHcC--CCCHHHHHHHHHH
Confidence 36999999999999999994 12355666654 6677777766443
No 407
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=30.47 E-value=2.2e+02 Score=29.81 Aligned_cols=65 Identities=9% Similarity=0.048 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~------a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
.+...+...++..||.+..+.. ..++++.+.. ..+|-||+--...+ ...+.++.+. .+|||++-.
T Consensus 42 ~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~--~~vDGiIi~~~~~~--~~~~~l~~~~~~~iPvV~id~ 114 (330)
T PRK10355 42 KDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMIN--RGVDVLVIIPYNGQ--VLSNVIKEAKQEGIKVLAYDR 114 (330)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChh--hHHHHHHHHHHCCCeEEEECC
Confidence 3455667777788999886654 3356667766 68998887421111 1234566654 689998843
No 408
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=30.46 E-value=2.4e+02 Score=27.30 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhCCCEEEEEC--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh--cCCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I--rdlPVIiLS~ 96 (572)
+...+...+++.||.+..+. +..+.++.+.. ..+|-||+--. + .+. ..++.+ ..+|+|++-.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~--~~vdgii~~~~--~-~~~-~~~~~~~~~~ipvV~~~~ 82 (261)
T cd06272 17 LVTGINQAISKNGYNMNVSITPSLAEAEDLFKE--NRFDGVIIFGE--S-ASD-VEYLYKIKLAIPVVSYGV 82 (261)
T ss_pred HHHHHHHHHHHcCCEEEEEecccHHHHHHHHHH--cCcCEEEEeCC--C-CCh-HHHHHHHHcCCCEEEEcc
Confidence 44567777778899876543 45667777777 67897776421 2 122 233444 3789998744
No 409
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=30.44 E-value=6e+02 Score=27.22 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=35.5
Q ss_pred eeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeCCCC--hHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHH
Q 008254 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHC--LSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNL 140 (572)
Q Consensus 64 pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~~~d--~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~ 140 (572)
.|++|+. + .|.-++|.+. .+|+|++..... .....-... .|+. ++ +-+.++|.+.
T Consensus 274 aDl~I~k---~---gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~-------------~G~g-~~--~~~~~~l~~~ 331 (391)
T PRK13608 274 SQLMITK---P---GGITISEGLARCIPMIFLNPAPGQELENALYFEE-------------KGFG-KI--ADTPEEAIKI 331 (391)
T ss_pred hhEEEeC---C---chHHHHHHHHhCCCEEECCCCCCcchhHHHHHHh-------------CCcE-EE--eCCHHHHHHH
Confidence 4777752 2 4666677765 899998864322 111111112 5554 33 3378888888
Q ss_pred HHHHHH
Q 008254 141 WQHVVH 146 (572)
Q Consensus 141 ~q~Vlr 146 (572)
+..++.
T Consensus 332 i~~ll~ 337 (391)
T PRK13608 332 VASLTN 337 (391)
T ss_pred HHHHhc
Confidence 887764
No 410
>PRK05693 short chain dehydrogenase; Provisional
Probab=30.30 E-value=2.5e+02 Score=27.86 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=48.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh----cCCcEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA----KDLPTII 93 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I----rdlPVIi 93 (572)
..|||..-..-+-..+...|...|+.|+.+....+.++.+.. .....+.+|+.-+. +..++++.+ ..+-+|+
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~--~~~~~~~~Dl~~~~--~~~~~~~~~~~~~~~id~vi 77 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA--AGFTAVQLDVNDGA--ALARLAEELEAEHGGLDVLI 77 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--CCCeEEEeeCCCHH--HHHHHHHHHHHhcCCCCEEE
Confidence 368888888888888999998889998865544455555555 34666667774433 334455555 2455555
Q ss_pred EeC
Q 008254 94 TSN 96 (572)
Q Consensus 94 LS~ 96 (572)
..+
T Consensus 78 ~~a 80 (274)
T PRK05693 78 NNA 80 (274)
T ss_pred ECC
Confidence 543
No 411
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=30.23 E-value=6e+02 Score=25.81 Aligned_cols=65 Identities=14% Similarity=0.049 Sum_probs=42.7
Q ss_pred HHHHHHHHHhCCCEEEE-------ECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEEEeCCC
Q 008254 30 AAELKFKLEAMDYIVST-------FYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIH 98 (572)
Q Consensus 30 ~~~L~~lL~~~gy~V~t-------a~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIiLS~~~ 98 (572)
.+.++..+++.|.+|+. ..+....+..++. ..+|+|++-.. . .++..+++.++ ..++|..+...
T Consensus 154 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~--~~pd~v~~~~~--~-~~~~~~~~~~~~~G~~~~~~~~~~~~ 228 (312)
T cd06346 154 ADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAA--GGPDALVVIGY--P-ETGSGILRSAYEQGLFDKFLLTDGMK 228 (312)
T ss_pred HHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh--cCCCEEEEecc--c-chHHHHHHHHHHcCCCCceEeecccc
Confidence 44566777777887652 2466778888887 78999987543 3 36778887775 45666554433
Q ss_pred C
Q 008254 99 C 99 (572)
Q Consensus 99 d 99 (572)
+
T Consensus 229 ~ 229 (312)
T cd06346 229 S 229 (312)
T ss_pred C
Confidence 3
No 412
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=30.22 E-value=2.6e+02 Score=26.95 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=50.4
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHH---hCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLE---AMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK- 87 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~---~~gy--~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir- 87 (572)
+|...-++||.||+..++-|+.-.. +.+. -|+-+ ...++|..|++ .-+.+-|+ | .+|-++.+++.
T Consensus 59 ~pg~~plFlVGdD~~S~~WL~~~~~~L~~l~AvGlVVNV-~t~~~L~~Lr~--lapgl~l~----P--~sgddLA~rL~l 129 (142)
T PF11072_consen 59 LPGLQPLFLVGDDPLSRQWLQQNAEELKQLGAVGLVVNV-ATEAALQRLRQ--LAPGLPLL----P--VSGDDLARRLGL 129 (142)
T ss_pred CCCCCCEEEEcCCHHHHHHHHHHHHHHHHCCCeEEEEec-CCHHHHHHHHH--HcCCCeec----C--CCHHHHHHHhCC
Confidence 4555679999999999999886544 4443 22333 34567888887 44555553 4 48999999985
Q ss_pred -CCcEEEEe
Q 008254 88 -DLPTIITS 95 (572)
Q Consensus 88 -dlPVIiLS 95 (572)
+-||+|..
T Consensus 130 ~HYPvLIt~ 138 (142)
T PF11072_consen 130 SHYPVLITA 138 (142)
T ss_pred CcccEEeec
Confidence 78988764
No 413
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=30.20 E-value=1.1e+02 Score=33.32 Aligned_cols=45 Identities=22% Similarity=0.186 Sum_probs=34.6
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCcc--EEEeCCCCHHHHHHHHHHHHHHH
Q 008254 88 DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAV--EFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~--dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
++|.|+||+--+.+...+.+. .|.+.||. +||-- +.+|...+.-.
T Consensus 242 ~~P~i~LSaGV~~~~F~~~l~---------~A~~aGa~fnGvL~G-------RAtW~~~v~~~ 288 (329)
T PRK04161 242 HLPYIYLSAGVSAKLFQETLV---------FAAEAGAQFNGVLCG-------RATWAGSVPVY 288 (329)
T ss_pred CCCEEEEcCCCCHHHHHHHHH---------HHHhcCCCcccEEee-------hhhhhhhhhhh
Confidence 899999999999888888776 46669998 99874 34566665533
No 414
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=30.15 E-value=1.5e+02 Score=32.03 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=29.7
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCCEEEEEC---------CHHHHHHHhhcCCCCeeEEEE
Q 008254 18 LRVLLLDQDSSAA-----AELKFKLEAMDYIVSTFY---------NENEALSAFSDKPENFHVAIV 69 (572)
Q Consensus 18 lRVLVVDDD~~~~-----~~L~~lL~~~gy~V~ta~---------~a~EAL~~L~e~~~~pDLVIv 69 (572)
-|+|||-|..... +.+...|+..|+.+..+. +.+++++.+++ ..+|+||.
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa 87 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMRE--FEPDWIIA 87 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEEEE
Confidence 4777777665433 456666666666555443 24556666666 56666663
No 415
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=30.13 E-value=6.2e+02 Score=27.46 Aligned_cols=105 Identities=10% Similarity=0.099 Sum_probs=58.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAM--DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~--gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVI 92 (572)
..+||.||.- -. .......+.+. +++++ .++...+..+.+.+ .+++-. - .+--++++. -|+-+|
T Consensus 2 ~~~rVgViG~-~~-G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~---~~gi~~----y---~~~eell~d-~Di~~V 68 (343)
T TIGR01761 2 DVQSVVVCGT-RF-GQFYLAAFAAAPERFELAGILAQGSERSRALAH---RLGVPL----Y---CEVEELPDD-IDIACV 68 (343)
T ss_pred CCcEEEEEeH-HH-HHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHH---HhCCCc----c---CCHHHHhcC-CCEEEE
Confidence 3478888887 33 44444444443 46665 45544444444443 233211 0 122233321 144555
Q ss_pred EEe----CCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 93 ITS----NIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 93 iLS----~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
.+. +....+.+.+|++ .|..=++-||+..+|....++.+-+
T Consensus 69 ~ipt~~P~~~H~e~a~~aL~-------------aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 69 VVRSAIVGGQGSALARALLA-------------RGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred EeCCCCCCccHHHHHHHHHh-------------CCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 542 1344688888888 9999999999997777775555444
No 416
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=30.04 E-value=2.1e+02 Score=31.44 Aligned_cols=70 Identities=11% Similarity=0.040 Sum_probs=43.9
Q ss_pred eeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHH
Q 008254 64 FHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLW 141 (572)
Q Consensus 64 pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~ 141 (572)
.+.+|++..-+.++---.++..+. ...+|... .+.+.+.-++. ++|.|+++.+++|-+..+++...
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~~~~~~i~a~v--~~~~eA~~~~~----------~LE~G~dGVll~~~d~~ei~~~~ 164 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQGSSTKIIAVV--ADAEEARVALE----------VLEKGVDGVLLDPDDPAEIKALV 164 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhcCCCceEEEEe--CCHHHHHHHHH----------HHhcCCCeEEECCCCHHHHHHHH
Confidence 577777776665233334556563 44554443 33444444443 34599999999999999999865
Q ss_pred HHHH
Q 008254 142 QHVV 145 (572)
Q Consensus 142 q~Vl 145 (572)
..+-
T Consensus 165 ~~~~ 168 (354)
T PF01959_consen 165 ALLK 168 (354)
T ss_pred HHHh
Confidence 5443
No 417
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=29.94 E-value=2.4e+02 Score=28.89 Aligned_cols=59 Identities=8% Similarity=0.111 Sum_probs=44.1
Q ss_pred CHHHHHHHhhcCCCCeeEEEEeCCCCCCCCh--HHHHHHhc---CCcEEEEeCCCChHHHHHHHH
Q 008254 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIA 108 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG--~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~ 108 (572)
+..+.++.+.+. .-=.++++|+.--+++.| +++++.++ ++|||.--+-.+.+.+.++..
T Consensus 145 ~~~e~~~~~~~~-g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~ 208 (241)
T PRK14114 145 DPVSLLKRLKEY-GLEEIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQR 208 (241)
T ss_pred CHHHHHHHHHhc-CCCEEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHh
Confidence 567777777762 223799999987775566 56777775 799998888888888888776
No 418
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=29.78 E-value=7.4e+02 Score=27.36 Aligned_cols=68 Identities=18% Similarity=0.134 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEEC----CHHH---HHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 27 SSAAAELKFKLEAMDYIVSTFY----NENE---ALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 27 ~~~~~~L~~lL~~~gy~V~ta~----~a~E---AL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
...++.+...|+..+++|+.+. +.++ +.+.++. ..+|.||+-+..=. .+--++..++ +.||++++..
T Consensus 22 ~~~~~~~~~~l~~~~~~vv~~~~~~~~~~~~~~~~~~~~~--~~~d~ii~~~~tf~--~~~~~~~~~~~~~~Pvll~a~~ 97 (452)
T cd00578 22 EEYAREVADLLNELPVEVVDKPEVTGTPDEARKAAEEFNE--ANCDGLIVWMHTFG--PAKMWIAGLSELRKPVLLLATQ 97 (452)
T ss_pred HHHHHHHHHHHhcCCceEEecCcccCCHHHHHHHHHHHhh--cCCcEEEEcccccc--cHHHHHHHHHhcCCCEEEEeCC
Confidence 3456677777877788886433 4444 4456666 57999997654433 3333444444 7999999876
Q ss_pred C
Q 008254 98 H 98 (572)
Q Consensus 98 ~ 98 (572)
.
T Consensus 98 ~ 98 (452)
T cd00578 98 F 98 (452)
T ss_pred C
Confidence 5
No 419
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=29.73 E-value=5.1e+02 Score=27.47 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=34.0
Q ss_pred eeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeCCCCh--HHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHH
Q 008254 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCL--STMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNL 140 (572)
Q Consensus 64 pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~~~d~--~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~ 140 (572)
.|++|+ +. .|.-++|.+. .+|+|+....... ......+. .|+- ++ +-+.++|.++
T Consensus 283 aDv~V~----~~--g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~-------------~g~g-~~--~~~~~~la~~ 340 (382)
T PLN02605 283 CDCIIT----KA--GPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVD-------------NGFG-AF--SESPKEIARI 340 (382)
T ss_pred CCEEEE----CC--CcchHHHHHHcCCCEEEecCCCccchhhHHHHHh-------------CCce-ee--cCCHHHHHHH
Confidence 477775 22 3555666664 8999987632111 11111122 4553 33 2688888888
Q ss_pred HHHHHH
Q 008254 141 WQHVVH 146 (572)
Q Consensus 141 ~q~Vlr 146 (572)
+..++.
T Consensus 341 i~~ll~ 346 (382)
T PLN02605 341 VAEWFG 346 (382)
T ss_pred HHHHHc
Confidence 877764
No 420
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=29.65 E-value=1.1e+02 Score=29.24 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=32.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008254 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIv 69 (572)
|||+|........+...|++.|+++..+............ ..+|.||+
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~--~~~dgvil 48 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELEL--LNPDAIVI 48 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhh--cCCCEEEE
Confidence 6899999999999999999999877654433222111122 35777665
No 421
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=29.63 E-value=2.9e+02 Score=30.08 Aligned_cols=90 Identities=19% Similarity=0.176 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCC----ChHHHHHHhc----CCcEEEEeCC
Q 008254 26 DSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTD----GSFKFLETAK----DLPTIITSNI 97 (572)
Q Consensus 26 D~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~m----dG~~lLe~Ir----dlPVIiLS~~ 97 (572)
|....+.+...|...||+.+... ...|+|++...... . ..+++++.++ +.+ |++++.
T Consensus 9 N~~ds~~~~~~l~~~g~~~~~~~-------------~~aD~v~intctv~-~~a~~~~~~~i~~~k~~~p~~~-vvvgGc 73 (414)
T TIGR01579 9 NQYESESLKNQLIQKGYEVVPDE-------------DKADVYIINTCTVT-AKADSKARRAIRRARRQNPTAK-IIVTGC 73 (414)
T ss_pred CHHHHHHHHHHHHHCcCEECCCc-------------ccCCEEEEeccccc-hHHHHHHHHHHHHHHhhCCCcE-EEEECC
Confidence 44566788899999999876422 35799999975544 2 2566777775 244 555554
Q ss_pred CChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHH
Q 008254 98 HCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQH 143 (572)
Q Consensus 98 ~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~ 143 (572)
.-...-.++.. ....|+++-+-..+.+.+.++.
T Consensus 74 ~a~~~~ee~~~-------------~~~vD~vv~~e~~~~~~~ll~~ 106 (414)
T TIGR01579 74 YAQSNPKELAD-------------LKDVDLVLGNKEKDKINKLLSL 106 (414)
T ss_pred ccccCHHHHhc-------------CCCCcEEECCCCHHHHHHHHHH
Confidence 33222222333 6678899988888888876653
No 422
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=29.53 E-value=3.3e+02 Score=28.63 Aligned_cols=96 Identities=16% Similarity=0.274 Sum_probs=59.3
Q ss_pred cEEEEEeCCHH------HHHHHHHHHHhCCCEEEEECCHHHHH-HHhhcCCCCeeEEEEeCCCCCCCCh-----HHHHHH
Q 008254 18 LRVLLLDQDSS------AAAELKFKLEAMDYIVSTFYNENEAL-SAFSDKPENFHVAIVEVTTSNTDGS-----FKFLET 85 (572)
Q Consensus 18 lRVLVVDDD~~------~~~~L~~lL~~~gy~V~ta~~a~EAL-~~L~e~~~~pDLVIvDv~mPd~mdG-----~~lLe~ 85 (572)
+++=|+-|+.. -.-.-.++|-..||.|..+.+.+-.+ +.|.+ -.. .+|+=+.-|= ..| -..|+.
T Consensus 101 iKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee--~Gc-aavMPl~aPI-GSg~G~~n~~~l~i 176 (262)
T COG2022 101 IKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEE--AGC-AAVMPLGAPI-GSGLGLQNPYNLEI 176 (262)
T ss_pred EEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHh--cCc-eEeccccccc-cCCcCcCCHHHHHH
Confidence 45556655332 22233455667799998655544433 34444 222 3444444442 233 223444
Q ss_pred hc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 86 AK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 86 Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
|. ++|||+=.+.+..+....+++ +|++..|+-
T Consensus 177 iie~a~VPviVDAGiG~pSdAa~aME-------------lG~DaVL~N 211 (262)
T COG2022 177 IIEEADVPVIVDAGIGTPSDAAQAME-------------LGADAVLLN 211 (262)
T ss_pred HHHhCCCCEEEeCCCCChhHHHHHHh-------------cccceeehh
Confidence 43 899999999999999999999 999999874
No 423
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=29.50 E-value=3.1e+02 Score=27.74 Aligned_cols=78 Identities=14% Similarity=0.207 Sum_probs=50.5
Q ss_pred HHHHHHHhhcCCCCe-eEEEEeCCCCCCCCh--HHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCC
Q 008254 50 ENEALSAFSDKPENF-HVAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLG 123 (572)
Q Consensus 50 a~EAL~~L~e~~~~p-DLVIvDv~mPd~mdG--~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~G 123 (572)
..+.++.+.+ ..+ .+++.|+..-+++.| ++++++++ ++|||.--+-.+.+.+.++... .+.|
T Consensus 148 ~~~~~~~l~~--~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~----------~~~G 215 (241)
T PRK14024 148 LWEVLERLDS--AGCSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVASGGVSSLDDLRALAEL----------VPLG 215 (241)
T ss_pred HHHHHHHHHh--cCCCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhh----------ccCC
Confidence 4566666666 444 588888866553344 66677775 7999987777777877776540 0148
Q ss_pred ccEEEe------CCCCHHHHHH
Q 008254 124 AVEFLR------KPLSEDKLRN 139 (572)
Q Consensus 124 A~dYL~------KPvs~eeL~~ 139 (572)
+++.++ ..++.++++.
T Consensus 216 vdgV~igra~~~g~~~~~~~~~ 237 (241)
T PRK14024 216 VEGAIVGKALYAGAFTLPEALA 237 (241)
T ss_pred ccEEEEeHHHHcCCCCHHHHHH
Confidence 887765 3666666654
No 424
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=29.35 E-value=2.5e+02 Score=27.00 Aligned_cols=65 Identities=8% Similarity=0.194 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~---a~---EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
+...+...++..||.+..+.+ .+ ++++.+.. ..+|-||+-- .+.....++++.++ .+|+|++...
T Consensus 17 ~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~dgii~~~--~~~~~~~~~l~~l~~~~ipvv~~~~~ 89 (268)
T cd06323 17 LKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLIT--RGVDAIIINP--TDSDAVVPAVKAANEAGIPVFTIDRE 89 (268)
T ss_pred HHHHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHH--cCCCEEEEcC--CChHHHHHHHHHHHHCCCcEEEEccC
Confidence 445667777788998876543 33 45555555 5789877621 22011245666664 7899988553
No 425
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=29.34 E-value=2.3e+02 Score=32.28 Aligned_cols=98 Identities=14% Similarity=0.119 Sum_probs=60.3
Q ss_pred CccEEEEEeCCHHH----HHHHHHHHHhCC--CEEE--EECCHHHHHHHhhcCCCCeeEEEEeCC--------------C
Q 008254 16 KGLRVLLLDQDSSA----AAELKFKLEAMD--YIVS--TFYNENEALSAFSDKPENFHVAIVEVT--------------T 73 (572)
Q Consensus 16 ~~lRVLVVDDD~~~----~~~L~~lL~~~g--y~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~--------------m 73 (572)
.++.+++||.-.-. .+.++.+=+..+ ..|. .+.+.+.|..++.. ..|.|.+-+. .
T Consensus 253 aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~a---GAd~I~vg~g~Gs~c~tr~~~~~g~ 329 (502)
T PRK07107 253 AGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEA---GADFVKVGIGGGSICITREQKGIGR 329 (502)
T ss_pred hCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHc---CCCEEEECCCCCcCcccccccCCCc
Confidence 46777877744433 444444444443 3344 36778888887775 5677766332 1
Q ss_pred CCCCChH-HHHHHhc--------CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 74 SNTDGSF-KFLETAK--------DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 74 Pd~mdG~-~lLe~Ir--------dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
|. .+.+ +..+..+ ++|||+-.+......+.+|+. +||+..++=
T Consensus 330 ~~-~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla-------------~GA~~vm~G 381 (502)
T PRK07107 330 GQ-ATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALA-------------MGADFIMLG 381 (502)
T ss_pred cH-HHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHH-------------cCCCeeeeC
Confidence 11 1111 1222111 389999999999999999999 999988764
No 426
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=29.31 E-value=3.2e+02 Score=28.21 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=40.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCC----EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChH-HHHHHhc
Q 008254 19 RVLLLDQDSSAAAELKFKLEAMDY----IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSF-KFLETAK 87 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~~gy----~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~-~lLe~Ir 87 (572)
|++.|-++...+......|...|. ++......++++..+.. +|.+++|...-+ -. ++|+.++
T Consensus 71 R~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~----iDF~vVDc~~~d---~~~~vl~~~~ 137 (218)
T PF07279_consen 71 RHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKG----IDFVVVDCKRED---FAARVLRAAK 137 (218)
T ss_pred eEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccC----CCEEEEeCCchh---HHHHHHHHhc
Confidence 555555555556666666665553 44444557778877655 899999998544 44 6777665
No 427
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=29.29 E-value=1.5e+02 Score=32.14 Aligned_cols=45 Identities=22% Similarity=0.210 Sum_probs=34.9
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCc--cEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 88 DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGA--VEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA--~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
++|.|+||+--+.+...+.+. .|.+.|| .+||-- +.+|...+.-.
T Consensus 240 ~~P~i~LSaGV~~~~F~~~l~---------~A~~aGa~fsGvL~G-------RAtW~~~v~~~ 286 (324)
T PRK12399 240 HLPYIYLSAGVSAELFQETLV---------FAHEAGAKFNGVLCG-------RATWAGSVKVY 286 (324)
T ss_pred CCCEEEEcCCCCHHHHHHHHH---------HHHHcCCCcceEEee-------hhhhHhhhhhh
Confidence 899999999999888888776 4566899 799974 45666666543
No 428
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=29.28 E-value=4.7e+02 Score=26.27 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=43.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I 86 (572)
+.+|..||-++...+..+..+...|. .+. ...+..+.... .. ..||+|++...+....+-..+++.+
T Consensus 66 g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~-~~--~~fD~V~~~~vl~~~~~~~~~l~~~ 135 (255)
T PRK11036 66 GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH-LE--TPVDLILFHAVLEWVADPKSVLQTL 135 (255)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh-cC--CCCCEEEehhHHHhhCCHHHHHHHH
Confidence 56899999999999999988887764 343 44566554332 23 5799999876543311233445444
No 429
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.23 E-value=2.3e+02 Score=30.13 Aligned_cols=92 Identities=12% Similarity=0.104 Sum_probs=58.2
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCCC--EE-EEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----
Q 008254 19 RVLLLDQDSSAAAELKFKLE----AMDY--IV-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~----~~gy--~V-~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---- 87 (572)
-|||-|++-.....+...+. ..++ .| +.+.+.+||.+++.. .+|+|.+|-.-|+ +--+.++.++
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~---GaD~I~LDn~~~e--~l~~av~~~~~~~~ 242 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEY---GADIIMLDNMPVD--LMQQAVQLIRQQNP 242 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHHHhcCC
Confidence 37777777555544555443 2443 23 488999999999865 7899999933232 2333444443
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 88 DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
.+ .|..|+.-+.+.+.+..+ .|++..-+
T Consensus 243 ~i-~leAsGGIt~~ni~~ya~-------------tGvD~Isv 270 (288)
T PRK07428 243 RV-KIEASGNITLETIRAVAE-------------TGVDYISS 270 (288)
T ss_pred Ce-EEEEECCCCHHHHHHHHH-------------cCCCEEEE
Confidence 34 455666667888877777 88876543
No 430
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=29.08 E-value=2.3e+02 Score=30.14 Aligned_cols=84 Identities=14% Similarity=0.073 Sum_probs=53.1
Q ss_pred EEEEeCCHHHHH-------HHHHHHHhCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---
Q 008254 20 VLLLDQDSSAAA-------ELKFKLEAMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--- 87 (572)
Q Consensus 20 VLVVDDD~~~~~-------~L~~lL~~~g--y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--- 87 (572)
|||-|++-.... .++.+=+..+ ...+.+.+.++|.+++.. .+|+|++|-.-|. +--++.+.++
T Consensus 160 vLikdNHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~a---gaDiI~LDn~~~e--~l~~av~~~~~~~ 234 (284)
T PRK06096 160 ILLFANHRHFLHDPQDWSGAINQLRRHAPEKKIVVEADTPKEAIAALRA---QPDVLQLDKFSPQ--QATEIAQIAPSLA 234 (284)
T ss_pred hhhHHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhhccC
Confidence 566666554433 3333333333 245588899999999987 6899999954333 4444555443
Q ss_pred CCcEEEEeCCCChHHHHHHHH
Q 008254 88 DLPTIITSNIHCLSTMMKCIA 108 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~ 108 (572)
.-..|-.|+.-..+.+.....
T Consensus 235 ~~~~leaSGGI~~~ni~~yA~ 255 (284)
T PRK06096 235 PHCTLSLAGGINLNTLKNYAD 255 (284)
T ss_pred CCeEEEEECCCCHHHHHHHHh
Confidence 334566788888888877766
No 431
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=28.93 E-value=5.5e+02 Score=30.62 Aligned_cols=105 Identities=6% Similarity=0.019 Sum_probs=60.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIIT 94 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiL 94 (572)
++++||.+-+ .+..|+.+.++.|. .|....--.+...++.. .|++++=-. .. .-|..+++.+. .+|||..
T Consensus 549 ~~LvIvG~G~-~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~a----aDv~VlpS~-~E-gfp~vlLEAMA~G~PVVat 621 (694)
T PRK15179 549 VRFIMVGGGP-LLESVREFAQRLGMGERILFTGLSRRVGYWLTQ----FNAFLLLSR-FE-GLPNVLIEAQFSGVPVVTT 621 (694)
T ss_pred eEEEEEccCc-chHHHHHHHHHcCCCCcEEEcCCcchHHHHHHh----cCEEEeccc-cc-cchHHHHHHHHcCCeEEEE
Confidence 5666776643 34556666665543 34333322333344444 466665332 22 24677788775 8999865
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCC--HHHHHHHHHHHHH
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLS--EDKLRNLWQHVVH 146 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs--~eeL~~~~q~Vlr 146 (572)
.. +. +.+.+. .|..+||+.|-+ .++|.+++..++.
T Consensus 622 ~~-gG---~~EiV~-------------dg~~GlLv~~~d~~~~~La~aL~~ll~ 658 (694)
T PRK15179 622 LA-GG---AGEAVQ-------------EGVTGLTLPADTVTAPDVAEALARIHD 658 (694)
T ss_pred CC-CC---hHHHcc-------------CCCCEEEeCCCCCChHHHHHHHHHHHh
Confidence 43 32 233444 788999998665 4577777766665
No 432
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=28.84 E-value=2.1e+02 Score=27.64 Aligned_cols=65 Identities=8% Similarity=0.030 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhCCCEEEEE-CC------HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTF-YN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta-~~------a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
.+..+++..+++.||.+..+ .+ ...+++.+.. ..+|-||+...... ..+.++.+. .+|||++...
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiii~~~~~~---~~~~~~~~~~~~ipvv~i~~~ 89 (270)
T cd01545 16 EIQLGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQR--SRVDGVILTPPLSD---NPELLDLLDEAGVPYVRIAPG 89 (270)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHH--CCCCEEEEeCCCCC---ccHHHHHHHhcCCCEEEEecC
Confidence 45677888888889987643 22 1234555666 67888877543322 234555553 7999988653
No 433
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=28.83 E-value=1.1e+02 Score=31.34 Aligned_cols=52 Identities=12% Similarity=0.147 Sum_probs=38.7
Q ss_pred cEEEEEe------CC--HHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 18 LRVLLLD------QD--SSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 18 lRVLVVD------DD--~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
++|.|+- .+ ......+...|++.||+|.......+.++.+.. ..+|+||.=+
T Consensus 5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~--~~~D~v~~~~ 64 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKE--LGFDRVFNAL 64 (304)
T ss_pred cEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhcc--CCCCEEEEec
Confidence 4777775 22 224567888889999999888777777888877 6899999754
No 434
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=28.78 E-value=7.8e+02 Score=26.68 Aligned_cols=96 Identities=15% Similarity=0.128 Sum_probs=62.5
Q ss_pred cEEEEEeC----CHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCCC-----------CCCC-
Q 008254 18 LRVLLLDQ----DSSAAAELKFKLEAMD-YIVS--TFYNENEALSAFSDKPENFHVAIVEVTTS-----------NTDG- 78 (572)
Q Consensus 18 lRVLVVDD----D~~~~~~L~~lL~~~g-y~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~mP-----------d~md- 78 (572)
..++++|- .....+.++.+-+... ..|. -+.+.+.|..++.. ..|.|.+-+.-- + ..
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~a---Gad~I~V~~G~G~~~~tr~~~g~g-~~~ 184 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFG-TGG 184 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccceeeeccC-CCc
Confidence 36777776 2445555555555443 3333 35688888888776 567776542111 1 11
Q ss_pred -hHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 79 -SFKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 79 -G~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
++..+..++ ++|||.-.+......+.+|+. +||+...+=
T Consensus 185 ~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa-------------~GAd~Vmig 227 (321)
T TIGR01306 185 WQLAALRWCAKAARKPIIADGGIRTHGDIAKSIR-------------FGASMVMIG 227 (321)
T ss_pred hHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHHH-------------cCCCEEeec
Confidence 233444443 799999999999999999999 999988774
No 435
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=28.69 E-value=1.9e+02 Score=28.36 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCEEEEEC-C------HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFY-N------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~-~------a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~ 96 (572)
+...+...+++.||.+..+. + ..+.++.+.. ..+|-+|+--..++ ...++++.+. .+|||++-.
T Consensus 16 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~--~~vDgiIi~~~~~~--~~~~~l~~~~~~ipvV~~~~ 87 (271)
T cd06314 16 AEAGVKAAGKELGVDVEFVVPQQGTVNAQLRMLEDLIA--EGVDGIAISPIDPK--AVIPALNKAAAGIKLITTDS 87 (271)
T ss_pred HHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEecCChh--HhHHHHHHHhcCCCEEEecC
Confidence 44556666778899887652 2 2345666666 67888887532221 1235556543 789998854
No 436
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=28.68 E-value=4.8e+02 Score=26.33 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=36.2
Q ss_pred EEEEEeCCHH----HHHHHHHHHHhCCCEEEEE-------CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc
Q 008254 19 RVLLLDQDSS----AAAELKFKLEAMDYIVSTF-------YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (572)
Q Consensus 19 RVLVVDDD~~----~~~~L~~lL~~~gy~V~ta-------~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir 87 (572)
+|.++.++.. ....++..++..|+.|... .+-...+..++. ..+|+||+... . .+...|++.++
T Consensus 137 ~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~--~~~~~vi~~~~--~-~~~~~~~~~~~ 211 (334)
T cd06342 137 KVAIIDDKTAYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKA--ANPDAVFFGGY--Y-PEAGPLVRQMR 211 (334)
T ss_pred EEEEEeCCcchhhHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHh--cCCCEEEEcCc--c-hhHHHHHHHHH
Confidence 4555444433 3345556666667766522 345566666666 56788876442 2 34666776664
No 437
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=28.67 E-value=5e+02 Score=26.27 Aligned_cols=77 Identities=12% Similarity=0.189 Sum_probs=49.9
Q ss_pred CHHHHHHHhhcCCCCee-EEEEeCCCCCCCCh--HHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccC
Q 008254 49 NENEALSAFSDKPENFH-VAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQL 122 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~pD-LVIvDv~mPd~mdG--~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~ 122 (572)
+..+.+..+.+ ..++ +++.|+.--+++.| +++++.++ ++|||.--+..+.+.+.++++. .
T Consensus 154 ~~~~~~~~~~~--~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~------------~ 219 (253)
T PRK02083 154 DAVEWAKEVEE--LGAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTE------------G 219 (253)
T ss_pred CHHHHHHHHHH--cCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHh------------C
Confidence 34556666666 5665 66766542221233 66677775 7999988888888999888871 4
Q ss_pred CccEEEe------CCCCHHHHHH
Q 008254 123 GAVEFLR------KPLSEDKLRN 139 (572)
Q Consensus 123 GA~dYL~------KPvs~eeL~~ 139 (572)
|+++.++ .-++.++++.
T Consensus 220 G~~gvivg~al~~~~~~~~~~~~ 242 (253)
T PRK02083 220 GADAALAASIFHFGEITIGELKA 242 (253)
T ss_pred CccEEeEhHHHHcCCCCHHHHHH
Confidence 8887776 3455555554
No 438
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=28.63 E-value=6.1e+02 Score=28.69 Aligned_cols=105 Identities=10% Similarity=0.017 Sum_probs=57.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIi 93 (572)
.++..|+.+.+. .+.|+.+++..+. .|..... .+.-+.+.. .|++++=-. .. .-|+-++|.+. .+|||.
T Consensus 350 ~~~l~i~G~G~~-~~~l~~~i~~~~l~~~V~f~G~-~~~~~~~~~----adv~v~pS~-~E-gfgl~~lEAma~G~PVI~ 421 (500)
T TIGR02918 350 ELTFDIYGEGGE-KQKLQKIINENQAQDYIHLKGH-RNLSEVYKD----YELYLSAST-SE-GFGLTLMEAVGSGLGMIG 421 (500)
T ss_pred CeEEEEEECchh-HHHHHHHHHHcCCCCeEEEcCC-CCHHHHHHh----CCEEEEcCc-cc-cccHHHHHHHHhCCCEEE
Confidence 356667766554 3556666665533 2332221 222233333 466665322 23 34667778776 899987
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCC----CC----HHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKP----LS----EDKLRNLWQHVV 145 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KP----vs----~eeL~~~~q~Vl 145 (572)
........ +.+. .|-.+||+.+ -+ .++|.++|..++
T Consensus 422 ~dv~~G~~---eiI~-------------~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll 465 (500)
T TIGR02918 422 FDVNYGNP---TFIE-------------DNKNGYLIPIDEEEDDEDQIITALAEKIVEYF 465 (500)
T ss_pred ecCCCCCH---HHcc-------------CCCCEEEEeCCccccchhHHHHHHHHHHHHHh
Confidence 65331222 2333 7899999973 33 566666665555
No 439
>PRK10060 RNase II stability modulator; Provisional
Probab=28.61 E-value=4.9e+02 Score=30.24 Aligned_cols=98 Identities=11% Similarity=0.112 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCC----CCCCChHHHHHHh----c--CCcEEEEe
Q 008254 28 SAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTT----SNTDGSFKFLETA----K--DLPTIITS 95 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~m----Pd~mdG~~lLe~I----r--dlPVIiLS 95 (572)
.....+-..|++.|+.+. -|.++...+..|.. -.+|.|=+|-.. ........+++.+ + ++.||+ .
T Consensus 541 ~~~~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~--l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viA-e 617 (663)
T PRK10060 541 ELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLAR--FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIA-E 617 (663)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHh--CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEE-e
Confidence 344455667788899877 47888999999998 789999998533 2202345555555 2 566653 4
Q ss_pred CCCChHHHHHHHHHHHhhhhccccccCCcc----EEEeCCCCHHHHHHHH
Q 008254 96 NIHCLSTMMKCIAIMVMNQLFDNNFQLGAV----EFLRKPLSEDKLRNLW 141 (572)
Q Consensus 96 ~~~d~~~~~kai~~~~~~~~~~~~~~~GA~----dYL~KPvs~eeL~~~~ 141 (572)
+-.+.+....+.. +|++ .|+.||...+++...+
T Consensus 618 GVEt~~q~~~l~~-------------~G~d~~QGy~~~~P~~~~~~~~~l 654 (663)
T PRK10060 618 GVETAKEDAFLTK-------------NGVNERQGFLFAKPMPAVAFERWY 654 (663)
T ss_pred cCCCHHHHHHHHH-------------cCCCEEecCccCCCCCHHHHHHHH
Confidence 4455555554444 7775 3577999999987744
No 440
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.51 E-value=2.7e+02 Score=26.94 Aligned_cols=63 Identities=11% Similarity=0.130 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhCCCEEEEECC--HH---HH-HHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN--EN---EA-LSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~--a~---EA-L~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
.+...++..+++.||.+..... .. +. ...+.. ..+|.||+.-.... -..++.+. .+|||++-.
T Consensus 21 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~dgiii~~~~~~----~~~~~~~~~~~ipvV~~~~ 91 (270)
T cd06294 21 EVLRGISAVANENGYDISLATGKNEEELLEEVKKMIQQ--KRVDGFILLYSRED----DPIIDYLKEEKFPFVVIGK 91 (270)
T ss_pred HHHHHHHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHH--cCcCEEEEecCcCC----cHHHHHHHhcCCCEEEECC
Confidence 4567788888889998774432 21 22 234445 56888777532222 23455553 799998854
No 441
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=28.41 E-value=1.8e+02 Score=31.98 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=41.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE---EE-EECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYI---VS-TFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~---V~-ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
.+|..||-++...+..+.-++..|+. +. ...|..+.+..+......||+||+|-
T Consensus 244 ~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDP 301 (396)
T PRK15128 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECC
Confidence 48999999999999999999887762 33 56788888866643225799999984
No 442
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=28.35 E-value=1.5e+02 Score=29.15 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=25.3
Q ss_pred CCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEeCCCChHHHHHHHH
Q 008254 62 ENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNIHCLSTMMKCIA 108 (572)
Q Consensus 62 ~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS~~~d~~~~~kai~ 108 (572)
..|||||....... .+-++.++.+..+|++++......+...+.+.
T Consensus 73 l~PDLIi~~~~~~~-~~~~~~l~~~~gipvv~~~~~~~~~~~~~~i~ 118 (262)
T cd01147 73 LKPDVVIDVGSDDP-TSIADDLQKKTGIPVVVLDGGDSLEDTPEQIR 118 (262)
T ss_pred cCCCEEEEecCCcc-chhHHHHHHhhCCCEEEEecCCchHhHHHHHH
Confidence 56899887643322 11234444444578888765433444545444
No 443
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=28.02 E-value=2.7e+02 Score=27.50 Aligned_cols=64 Identities=9% Similarity=0.059 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCEEEEECC--HH---HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN--EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~--a~---EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
+...+...++..||.+..+.. .+ ++++.+.. ..+|-||+-...+. ..-++++.++ .+|||++-.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~--~~~dgiii~~~~~~--~~~~~~~~~~~~~iPvV~~~~ 87 (289)
T cd01540 17 EWKFAKKAAKEKGFTVVKIDVPDGEKVLSAIDNLGA--QGAKGFVICVPDVK--LGPAIVAKAKAYNMKVVAVDD 87 (289)
T ss_pred HHHHHHHHHHHcCCEEEEccCCCHHHHHHHHHHHHH--cCCCEEEEccCchh--hhHHHHHHHHhCCCeEEEecC
Confidence 455677788888998876533 22 34444555 57887776432221 1234566664 789998743
No 444
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=28.02 E-value=2.8e+02 Score=28.17 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
+...+...++..||.+..+.. . .+.++.+.. ..+|-||+.-..+. ..+.++.+. .+|||++-.
T Consensus 78 ~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~---~~~~~~~l~~~~iPvV~~~~ 148 (327)
T TIGR02417 78 IAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLA--RQVDALIVASCMPP---EDAYYQKLQNEGLPVVALDR 148 (327)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEeCCCCC---ChHHHHHHHhcCCCEEEEcc
Confidence 456677777788998775432 2 245666666 67887776422221 235555554 689998854
No 445
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=27.98 E-value=3.3e+02 Score=28.62 Aligned_cols=82 Identities=21% Similarity=0.168 Sum_probs=52.7
Q ss_pred HHHHHHHHHhCCCEE-EEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHH----HHHHh----c-CCcEEEEeCCCC
Q 008254 30 AAELKFKLEAMDYIV-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFK----FLETA----K-DLPTIITSNIHC 99 (572)
Q Consensus 30 ~~~L~~lL~~~gy~V-~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~----lLe~I----r-dlPVIiLS~~~d 99 (572)
++.|...-...|.++ +.+.|.+|+-.++.- ... |+-++.-| ...|+ ..+.+ . +.-+|.-|+...
T Consensus 145 l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~---ga~--iIGINnRd-L~tf~vdl~~t~~la~~~p~~~~~IsESGI~~ 218 (254)
T COG0134 145 LEELVDRAHELGMEVLVEVHNEEELERALKL---GAK--IIGINNRD-LTTLEVDLETTEKLAPLIPKDVILISESGIST 218 (254)
T ss_pred HHHHHHHHHHcCCeeEEEECCHHHHHHHHhC---CCC--EEEEeCCC-cchheecHHHHHHHHhhCCCCcEEEecCCCCC
Confidence 344455555668765 489999998888775 233 33333333 22322 22222 2 566677788888
Q ss_pred hHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 100 LSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 100 ~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
.+.+++... .||++||+-
T Consensus 219 ~~dv~~l~~-------------~ga~a~LVG 236 (254)
T COG0134 219 PEDVRRLAK-------------AGADAFLVG 236 (254)
T ss_pred HHHHHHHHH-------------cCCCEEEec
Confidence 899999888 999999984
No 446
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=27.82 E-value=3.4e+02 Score=34.62 Aligned_cols=77 Identities=13% Similarity=0.161 Sum_probs=55.8
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHhhcCCCCeeEEEEeCCCCCCCCh-HHHHHHhc--
Q 008254 18 LRVLLL----DQDSSAAAELKFKLEAMDYIVSTFY---NENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK-- 87 (572)
Q Consensus 18 lRVLVV----DDD~~~~~~L~~lL~~~gy~V~ta~---~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG-~~lLe~Ir-- 87 (572)
-+||+. |-+..=...+..+|+..||+|+-.. ..++.++.+.+ ..+|+|.+-..|...+.. .++++.++
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e--~~~diVgLS~L~t~s~~~m~~~i~~L~~~ 829 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKE--ENADIIGLSGLITPSLDEMVHVAKEMERQ 829 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--hCCCEEEEcCcchhhHHHHHHHHHHHHhc
Confidence 467777 7777777888888999999998544 67888999988 899999988877652443 33455554
Q ss_pred --CCcEEEEeC
Q 008254 88 --DLPTIITSN 96 (572)
Q Consensus 88 --dlPVIiLS~ 96 (572)
+++|++=-+
T Consensus 830 g~~v~v~vGGa 840 (1229)
T PRK09490 830 GFTIPLLIGGA 840 (1229)
T ss_pred CCCCeEEEEee
Confidence 566665433
No 447
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=27.78 E-value=1.4e+02 Score=31.57 Aligned_cols=55 Identities=22% Similarity=0.199 Sum_probs=40.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--C---EEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMD--Y---IVS-TFYNENEALSAFSDKPENFHVAIVEVTTS 74 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~g--y---~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mP 74 (572)
.-+|.+||=|+.+.+.-++.|.... . +|. ...|+.+.++... ..||+||+|..-|
T Consensus 100 ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~---~~fDvIi~D~tdp 160 (282)
T COG0421 100 VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE---EKFDVIIVDSTDP 160 (282)
T ss_pred cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC---CcCCEEEEcCCCC
Confidence 3579999999999999999997653 2 333 5666666665444 3799999999877
No 448
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=27.78 E-value=3.2e+02 Score=26.09 Aligned_cols=65 Identities=6% Similarity=0.054 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
++..++..++..||.+..+.. . .++++.+.. ..+|.||+--. .. ....+.++.++ .+|+|++...
T Consensus 17 ~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgvi~~~~-~~-~~~~~~~~~l~~~~ip~V~~~~~ 89 (267)
T cd01536 17 MNKGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIA--QGVDGIIISPV-DS-AALTPALKKANAAGIPVVTVDSD 89 (267)
T ss_pred HHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEeCC-Cc-hhHHHHHHHHHHCCCcEEEecCC
Confidence 445556666677998775543 2 244555555 47888876421 11 11223555554 7899988654
No 449
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=27.65 E-value=5.2e+02 Score=26.30 Aligned_cols=57 Identities=7% Similarity=0.106 Sum_probs=37.9
Q ss_pred HHHHHHHhhcCCCCeeEE-EEeCCCCCCCCh--HHHHHHhc---CCcEEEEeCCCChHHHHHHHH
Q 008254 50 ENEALSAFSDKPENFHVA-IVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIA 108 (572)
Q Consensus 50 a~EAL~~L~e~~~~pDLV-IvDv~mPd~mdG--~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~ 108 (572)
..+.++.+.+ ..+|.| +.|+.--+.+.| ++++++++ ++|||..-+..+.+.+.+++.
T Consensus 157 ~~~~~~~l~~--~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~ 219 (254)
T TIGR00735 157 AVEWAKEVEK--LGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFT 219 (254)
T ss_pred HHHHHHHHHH--cCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH
Confidence 4455566666 567744 444432221123 57777775 799999888899999999988
No 450
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=27.59 E-value=1.3e+02 Score=24.74 Aligned_cols=39 Identities=10% Similarity=0.125 Sum_probs=33.1
Q ss_pred cccCCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC
Q 008254 10 AWKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY 48 (572)
Q Consensus 10 ~~~~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~ 48 (572)
+++.+..|-.+.|+-|++.....+..+++..||+|....
T Consensus 19 al~~l~~G~~l~V~~d~~~s~~ni~~~~~~~g~~v~~~~ 57 (69)
T cd03422 19 ALPSLKPGEILEVISDCPQSINNIPIDARNHGYKVLAIE 57 (69)
T ss_pred HHHcCCCCCEEEEEecCchHHHHHHHHHHHcCCEEEEEE
Confidence 456677788888999999999999999999999997544
No 451
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.59 E-value=2.8e+02 Score=27.04 Aligned_cols=65 Identities=12% Similarity=0.073 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCCEEEEEC-----CHH---HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 29 AAAELKFKLEAMDYIVSTFY-----NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~-----~a~---EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
+...++..+++.||.+..+. +.. ++++.+.. ..+|-||+-- ... ....+.++.+. .+|+|++...
T Consensus 17 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgvii~~-~~~-~~~~~~l~~~~~~~ipvV~~~~~ 91 (273)
T cd06310 17 VKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIA--RGPDAILLAP-TDA-KALVPPLKEAKDAGIPVVLIDSG 91 (273)
T ss_pred HHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHH--hCCCEEEEcC-CCh-hhhHHHHHHHHHCCCCEEEecCC
Confidence 34566677778899887643 333 34545555 5788888732 111 11234666654 7899998653
No 452
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=27.51 E-value=91 Score=30.24 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=41.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHH-HHhhcCCCCeeEEEEeCCCCC
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEAL-SAFSDKPENFHVAIVEVTTSN 75 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL-~~L~e~~~~pDLVIvDv~mPd 75 (572)
-++.+|+||.....+-.-|..+|...+..|+.+..-..-+ +.++ .-|+||+-+.-|+
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~----~ADIVVsa~G~~~ 91 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITR----RADIVVSAVGKPN 91 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHT----TSSEEEE-SSSTT
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceee----eccEEeeeecccc
Confidence 3678999999999999999999999999999886554333 3333 3699999998887
No 453
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=27.45 E-value=2.9e+02 Score=29.57 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=34.6
Q ss_pred cEEEEEeCCHHHH----HHHHHHHHhCCCEEEEEC---------CHHHHHHHhhcCCCCeeEEEE
Q 008254 18 LRVLLLDQDSSAA----AELKFKLEAMDYIVSTFY---------NENEALSAFSDKPENFHVAIV 69 (572)
Q Consensus 18 lRVLVVDDD~~~~----~~L~~lL~~~gy~V~ta~---------~a~EAL~~L~e~~~~pDLVIv 69 (572)
-|+|||-|..... +.+...|+..|+.+..+. +..++++.+++ ..+|+||.
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~d~Iia 86 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYRE--EGCDGVIA 86 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHh--cCCCEEEE
Confidence 4889888765433 567788887776655443 35567777777 67899884
No 454
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=27.39 E-value=3.5e+02 Score=26.05 Aligned_cols=63 Identities=14% Similarity=0.148 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
.+...+...++..||.+..+.. . .++++.+.. ..+|-||+... + .+. ..++.++ .+|||++-.
T Consensus 16 ~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~~dgiii~~~--~-~~~-~~l~~~~~~~ipvV~~~~ 86 (267)
T cd06283 16 LVLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLA--YQVDGLIVNPT--G-NNK-ELYQRLAKNGKPVVLVDR 86 (267)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH--cCcCEEEEeCC--C-CCh-HHHHHHhcCCCCEEEEcC
Confidence 3566777778888998775433 2 234555556 57898877443 2 222 3355554 789998854
No 455
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=27.37 E-value=3.7e+02 Score=25.55 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=38.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHH----HHHhhcCCCCeeEEEEeCCCC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEA----LSAFSDKPENFHVAIVEVTTS 74 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EA----L~~L~e~~~~pDLVIvDv~mP 74 (572)
+.+|||......+...|...|.+.||.|..+....+. ...+......+.++.+|+.-+
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 66 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDE 66 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCH
Confidence 4689999999999999999888889988755433332 233332113456666776543
No 456
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=27.24 E-value=2.5e+02 Score=27.52 Aligned_cols=64 Identities=8% Similarity=0.104 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCCEEEEEC-----CH---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFY-----NE---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~-----~a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
+...+...+++.||.+..+. +. .++++.+.. ..+|.||+.-.-++ .-.+.++.++ .+|||++..
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~~~~ 90 (275)
T cd06320 17 LKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMIN--KGYKGLLFSPISDV--NLVPAVERAKKKGIPVVNVND 90 (275)
T ss_pred HHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHH--hCCCEEEECCCChH--HhHHHHHHHHHCCCeEEEECC
Confidence 34456677777899877542 22 345666666 57898876421111 1134556654 799998754
No 457
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.21 E-value=3.2e+02 Score=26.50 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFY---NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~---~a~---EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~ 96 (572)
+...+...+++.||.+..+. +.+ ++++.+.. ..+|-||+.-.... + ..++.+. .+|||++-.
T Consensus 17 ~~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~--~~~dgiii~~~~~~--~--~~~~~~~~~iPvV~i~~ 85 (265)
T cd06290 17 ILKGMERGLNGSGYSPIIATGHWNQSRELEALELLKS--RRVDALILLGGDLP--E--EEILALAEEIPVLAVGR 85 (265)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEeCCCCC--h--HHHHHHhcCCCEEEECC
Confidence 44556677788899877543 222 55667776 67888887532222 1 2233333 799998865
No 458
>PRK01581 speE spermidine synthase; Validated
Probab=27.18 E-value=6e+02 Score=28.23 Aligned_cols=57 Identities=26% Similarity=0.235 Sum_probs=38.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHH--HH---hC---CCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCC
Q 008254 15 PKGLRVLLLDQDSSAAAELKFK--LE---AM---DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS 74 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~l--L~---~~---gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mP 74 (572)
+...+|.+||=|+.+.+..+.. |. .. +-+|. .+.|+.+.+.... ..||+||+|+.-|
T Consensus 172 ~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~---~~YDVIIvDl~DP 237 (374)
T PRK01581 172 ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPS---SLYDVIIIDFPDP 237 (374)
T ss_pred CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcC---CCccEEEEcCCCc
Confidence 3446899999999988877752 21 11 22554 6778887776532 5799999997544
No 459
>PRK00955 hypothetical protein; Provisional
Probab=27.13 E-value=4.3e+02 Score=31.19 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=28.4
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEEECCH----HHHHHHhhcCCCCeeEEEE
Q 008254 24 DQDSSAAAELKFKLEAMDYIVSTFYNE----NEALSAFSDKPENFHVAIV 69 (572)
Q Consensus 24 DDD~~~~~~L~~lL~~~gy~V~ta~~a----~EAL~~L~e~~~~pDLVIv 69 (572)
|..+.-.+.|..+|+..||.|...... .+.+..| .+|.|++.
T Consensus 26 dhp~fg~a~i~r~L~~~G~~v~ii~qp~~~~~~~~~~~----g~P~l~~~ 71 (620)
T PRK00955 26 DHPSFGTAIIGRVLEAEGFRVGIIAQPNWRDLEDFKKL----GKPRLFFL 71 (620)
T ss_pred cCCccHHHHHHHHHHHCCCEEEEecCCCcCChHHHHhh----CCCcEEEE
Confidence 455667889999999999999866532 2333333 45777764
No 460
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=27.11 E-value=3.1e+02 Score=27.75 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCCEEEEEC---CH---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 30 AAELKFKLEAMDYIVSTFY---NE---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 30 ~~~L~~lL~~~gy~V~ta~---~a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
...+...++..||.+..+. +. .+.++.+.. ..+|-||+--..+. ..++++.+. .+|||++-.
T Consensus 80 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~---~~~~~~~l~~~~iPvV~v~~ 149 (328)
T PRK11303 80 AKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQ--RQVDALIVSTSLPP---EHPFYQRLQNDGLPIIALDR 149 (328)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEcCCCCC---ChHHHHHHHhcCCCEEEECC
Confidence 3456666777899877543 22 245666666 67898887432232 234555553 689998854
No 461
>PRK09186 flagellin modification protein A; Provisional
Probab=27.10 E-value=2.9e+02 Score=26.87 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=48.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHH----HHhhcC--CCCeeEEEEeCCCCCCCChHHHHHHhc-
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEAL----SAFSDK--PENFHVAIVEVTTSNTDGSFKFLETAK- 87 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL----~~L~e~--~~~pDLVIvDv~mPd~mdG~~lLe~Ir- 87 (572)
.++.+|||..-..-+-..+...|.+.||.|+.+....+.+ +.+... .....++.+|+.-++ +-.++++.+.
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~--~~~~~~~~~~~ 79 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQE--SLEEFLSKSAE 79 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHH--HHHHHHHHHHH
Confidence 4567899999999999999999999999888554333332 333220 012345566765443 2334555543
Q ss_pred ---CCcEEEEeC
Q 008254 88 ---DLPTIITSN 96 (572)
Q Consensus 88 ---dlPVIiLS~ 96 (572)
.+-+|+..+
T Consensus 80 ~~~~id~vi~~A 91 (256)
T PRK09186 80 KYGKIDGAVNCA 91 (256)
T ss_pred HcCCccEEEECC
Confidence 244555443
No 462
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=27.07 E-value=3e+02 Score=26.80 Aligned_cols=63 Identities=10% Similarity=0.027 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---C---HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTFY---N---ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~---~---a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
.+..++...+++.||.+..+. + ..+.++.+.. ..+|.||+--. + .+. ..++.+. .+|+|++-.
T Consensus 16 ~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~--~~vdgii~~~~--~-~~~-~~~~~~~~~~ipvV~~~~ 86 (268)
T cd06270 16 PLLSGVESVARKAGKHLIITAGHHSAEKEREAIEFLLE--RRCDALILHSK--A-LSD-DELIELAAQVPPLVLINR 86 (268)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHH--cCCCEEEEecC--C-CCH-HHHHHHhhCCCCEEEEec
Confidence 455677788888999877543 1 2345666666 67998887432 2 122 2255553 689998854
No 463
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.91 E-value=1.5e+02 Score=34.15 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=40.4
Q ss_pred CccEEEEEeCCHHHHHHHHHH------H----------HhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC--CCCC
Q 008254 16 KGLRVLLLDQDSSAAAELKFK------L----------EAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV--TTSN 75 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~l------L----------~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv--~mPd 75 (572)
.+.||||+-.|..-...++++ | -..||.-..+.-+.+|++..+. ..||+|++|. +|-+
T Consensus 405 NkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a~~--~gfDVvLiDTAGR~~~ 480 (587)
T KOG0781|consen 405 NKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQEARN--QGFDVVLIDTAGRMHN 480 (587)
T ss_pred CCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHHHHh--cCCCEEEEeccccccC
Confidence 467999999997655444332 1 1225544455667899999988 8999999998 4544
No 464
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=26.91 E-value=7.7e+02 Score=29.81 Aligned_cols=114 Identities=11% Similarity=0.101 Sum_probs=71.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC----CCEEE-EECCHHHHHH----------------HhhcCCCCeeEEEEeCCCC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAM----DYIVS-TFYNENEALS----------------AFSDKPENFHVAIVEVTTS 74 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~----gy~V~-ta~~a~EAL~----------------~L~e~~~~pDLVIvDv~mP 74 (572)
....|++...++.....+...++.. |.+|. .+.++.|+++ .++. +-+|++++|.+--
T Consensus 199 dkpnIvv~GHnp~l~~~iv~~~ee~~l~~~i~~~G~cCt~~d~~R~~~~~~~~g~~~~qe~~i~t--G~~D~~vvD~qCi 276 (731)
T cd01916 199 SKPVILVIGHNVAPGAEIMDYLEENGLEDKVEVGGICCTAIDLTRYNEKAKVVGPLSRQLKVVRS--GIADVVVVDEQCI 276 (731)
T ss_pred CccEEEEECCCCccHHHHHHHHhccchhhCceEEEEecccchHhhhccCCCccCcHHHHHHHHHc--CCCcEEEEecccC
Confidence 4568999999999999999998854 44554 7778877663 3444 6789999999765
Q ss_pred CCCChHHHHHHhcCCcEEEEeCCCC----------hHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHH
Q 008254 75 NTDGSFKFLETAKDLPTIITSNIHC----------LSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHV 144 (572)
Q Consensus 75 d~mdG~~lLe~IrdlPVIiLS~~~d----------~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~V 144 (572)
- -+-.++.+.. ..++|-+|.... .+.+.+.+. .+.--|| ++..|....+ .+++.+
T Consensus 277 ~-~~I~eiA~ky-G~g~I~tt~r~~~elp~i~~~die~i~~~L~---------~~glpga--~~~~~~k~~e--~~v~~A 341 (731)
T cd01916 277 R-ADILEEAQKL-GIPVIATNDKIMLGLPDVTDEDPDKIVEDLV---------SGKIPGV--LILDPEKVGE--VAVEVA 341 (731)
T ss_pred c-ccHHHHHHHh-CCCEEEechhhhcCCCCCccccHHHHHHHHH---------hCCCCce--EecChhhhhH--HHHHHH
Confidence 4 3344444332 567777776543 444444433 1222456 6666666655 444444
Q ss_pred HH
Q 008254 145 VH 146 (572)
Q Consensus 145 lr 146 (572)
+.
T Consensus 342 i~ 343 (731)
T cd01916 342 MA 343 (731)
T ss_pred HH
Confidence 43
No 465
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=26.90 E-value=1.6e+02 Score=35.72 Aligned_cols=69 Identities=10% Similarity=0.211 Sum_probs=43.9
Q ss_pred CCeeEEEEe-CCCCCCCChHHHHHH-hc----CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHH
Q 008254 62 ENFHVAIVE-VTTSNTDGSFKFLET-AK----DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSED 135 (572)
Q Consensus 62 ~~pDLVIvD-v~mPd~mdG~~lLe~-Ir----dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~e 135 (572)
..+.|+|+| +++-. ..++..|.+ |. .+-+||+|.. .+.+...|. .-...|-.++++.+
T Consensus 119 ~~~KV~IIDEad~lt-~~a~NaLLK~LEEpP~~~~fIl~tt~--~~kLl~TIr-------------SRc~~v~F~~l~~~ 182 (824)
T PRK07764 119 SRYKIFIIDEAHMVT-PQGFNALLKIVEEPPEHLKFIFATTE--PDKVIGTIR-------------SRTHHYPFRLVPPE 182 (824)
T ss_pred CCceEEEEechhhcC-HHHHHHHHHHHhCCCCCeEEEEEeCC--hhhhhHHHH-------------hheeEEEeeCCCHH
Confidence 356777777 55555 466654443 33 5666776643 344666665 55667777888888
Q ss_pred HHHHHHHHHHH
Q 008254 136 KLRNLWQHVVH 146 (572)
Q Consensus 136 eL~~~~q~Vlr 146 (572)
+|...+..++.
T Consensus 183 ~l~~~L~~il~ 193 (824)
T PRK07764 183 VMRGYLERICA 193 (824)
T ss_pred HHHHHHHHHHH
Confidence 88887776654
No 466
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=26.88 E-value=2.6e+02 Score=29.71 Aligned_cols=82 Identities=12% Similarity=0.110 Sum_probs=53.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHH----HHHHhhcCCCCeeEEEEeCCCCCC-CChHHHHHHhc--C
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENE----ALSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK--D 88 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~E----AL~~L~e~~~~pDLVIvDv~mPd~-mdG~~lLe~Ir--d 88 (572)
+...++++||....+..|..+=-.....-..-.+..+ .+..+.. +.-=.+|+|..||.+ +-|+.+++..+ .
T Consensus 29 ~~~D~iaaEDTR~t~~LL~~~~I~~~~is~h~hne~~~~~~li~~l~~--g~~valVSDAG~P~ISDPG~~LV~~a~~~g 106 (275)
T COG0313 29 KEVDVIAAEDTRVTRKLLSHLGIKTPLISYHEHNEKEKLPKLIPLLKK--GKSVALVSDAGTPLISDPGYELVRAAREAG 106 (275)
T ss_pred hhCCEEEEeccHHHHHHHHHhCCCCceecccCCcHHHHHHHHHHHHhc--CCeEEEEecCCCCcccCccHHHHHHHHHcC
Confidence 3467999999988876665542222111112223443 4445555 444578899999962 25999999997 8
Q ss_pred CcEEEEeCCCC
Q 008254 89 LPTIITSNIHC 99 (572)
Q Consensus 89 lPVIiLS~~~d 99 (572)
++|+.+.+...
T Consensus 107 i~V~~lPG~sA 117 (275)
T COG0313 107 IRVVPLPGPSA 117 (275)
T ss_pred CcEEecCCccH
Confidence 99999988543
No 467
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=26.88 E-value=5.6e+02 Score=25.10 Aligned_cols=79 Identities=19% Similarity=0.285 Sum_probs=44.6
Q ss_pred CHHHHHHHhhcCCCCee-EEEEeCCCCCCCChHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCc
Q 008254 49 NENEALSAFSDKPENFH-VAIVEVTTSNTDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGA 124 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~pD-LVIvDv~mPd~mdG~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA 124 (572)
+..+..+.+.+ ...+ |-++|...-- ...++.++.++ ++||++....-+...+..++. .||
T Consensus 32 ~~~~~A~~~~~--~GA~~l~v~~~~~~~-~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~-------------~Ga 95 (217)
T cd00331 32 DPVEIAKAYEK--AGAAAISVLTEPKYF-QGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARA-------------AGA 95 (217)
T ss_pred CHHHHHHHHHH--cCCCEEEEEeCcccc-CCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHH-------------cCC
Confidence 34444444444 3333 3344443333 34677777775 799998654455556666777 999
Q ss_pred cEEEe--CCCCHHHHHHHHHH
Q 008254 125 VEFLR--KPLSEDKLRNLWQH 143 (572)
Q Consensus 125 ~dYL~--KPvs~eeL~~~~q~ 143 (572)
+..++ .-+..+++.+.++.
T Consensus 96 d~v~l~~~~~~~~~~~~~~~~ 116 (217)
T cd00331 96 DAVLLIVAALDDEQLKELYEL 116 (217)
T ss_pred CEEEEeeccCCHHHHHHHHHH
Confidence 99983 23333555554433
No 468
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.84 E-value=3.7e+02 Score=28.17 Aligned_cols=96 Identities=16% Similarity=0.213 Sum_probs=54.6
Q ss_pred cEEEEEe--CCHHHH---HHHHHHHHhCCCEEEEECCHHHHHHHh----hcCCCCeeEEEEeCCCCCCCChHHHHHHhc-
Q 008254 18 LRVLLLD--QDSSAA---AELKFKLEAMDYIVSTFYNENEALSAF----SDKPENFHVAIVEVTTSNTDGSFKFLETAK- 87 (572)
Q Consensus 18 lRVLVVD--DD~~~~---~~L~~lL~~~gy~V~ta~~a~EAL~~L----~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir- 87 (572)
|+|.|+- +.+... ..+...| ..|+.+.......+++... .. ..+|+||+ +- .||- +|+.++
T Consensus 1 m~i~iv~~~~~~~~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~--~~~D~vi~---lG--GDGT-~L~a~~~ 71 (271)
T PRK01185 1 MKVAFVIRKDCKRCIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEE--INADVIIT---IG--GDGT-ILRTLQR 71 (271)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCcccc--cCCCEEEE---Ec--CcHH-HHHHHHH
Confidence 3566662 233333 4444445 4577777654433333210 11 24677776 22 3553 444444
Q ss_pred -CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 88 -DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 88 -dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
..||+-+. .|-.+||. .++.+++..+++.+++...
T Consensus 72 ~~~PilGIN--------------------------~G~lGFL~-~~~~~~~~~~l~~i~~g~~ 107 (271)
T PRK01185 72 AKGPILGIN--------------------------MGGLGFLT-EIEIDEVGSAIKKLIRGEY 107 (271)
T ss_pred cCCCEEEEE--------------------------CCCCccCc-ccCHHHHHHHHHHHHcCCc
Confidence 45766442 57778888 6889999998888887643
No 469
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.81 E-value=2.2e+02 Score=28.37 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCC-hHHHHHHhc--CCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~md-G~~lLe~Ir--dlPVIiLS~ 96 (572)
+...+...+++.||.+..+.. . .++++.+.. ..+|-||+-- .+ .+ ..+.++.++ ++|||++-.
T Consensus 18 ~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiil~~--~~-~~~~~~~~~~~~~~~iPvV~~d~ 89 (280)
T cd06315 18 VGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIA--LKPDGIVLGG--VD-AAELQAELELAQKAGIPVVGWHA 89 (280)
T ss_pred HHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEcC--CC-HHHHHHHHHHHHHCCCCEEEecC
Confidence 455666777778998875432 2 256777777 6789888731 11 11 134444443 799998854
No 470
>PRK06849 hypothetical protein; Provisional
Probab=26.79 E-value=2.9e+02 Score=29.60 Aligned_cols=42 Identities=21% Similarity=0.078 Sum_probs=33.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHH
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALS 55 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~ 55 (572)
|.++++|||..-.....-.+.+.|.+.|++|+.+.+....+.
T Consensus 1 ~~~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~ 42 (389)
T PRK06849 1 MNTKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLS 42 (389)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHH
Confidence 345689999999988777888889889999987776655443
No 471
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=26.74 E-value=3e+02 Score=27.55 Aligned_cols=68 Identities=13% Similarity=0.212 Sum_probs=49.6
Q ss_pred ECCHHHHHHHhhcCCCCee-EEEEeCCCCCCC--ChHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccc
Q 008254 47 FYNENEALSAFSDKPENFH-VAIVEVTTSNTD--GSFKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNF 120 (572)
Q Consensus 47 a~~a~EAL~~L~e~~~~pD-LVIvDv~mPd~m--dG~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~ 120 (572)
..+..+.++.+.+ ..+| ++|+|+.--+.. .-++++++++ .+||++--+..+.+.+.+++.
T Consensus 26 ~~d~~~~a~~~~~--~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~------------ 91 (243)
T cd04731 26 AGDPVELAKRYNE--QGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLR------------ 91 (243)
T ss_pred CCCHHHHHHHHHH--CCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH------------
Confidence 4478888888877 4555 888888743211 2256777775 689999888899999988888
Q ss_pred cCCccEEEe
Q 008254 121 QLGAVEFLR 129 (572)
Q Consensus 121 ~~GA~dYL~ 129 (572)
.|++..++
T Consensus 92 -~G~~~v~i 99 (243)
T cd04731 92 -AGADKVSI 99 (243)
T ss_pred -cCCceEEE
Confidence 88777665
No 472
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=26.66 E-value=4.3e+02 Score=27.42 Aligned_cols=81 Identities=20% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCCeeEEEEeC-C---------CCCCCChHHHHHHhcCCcEEE-EeCCCC-----hHHHHHHHHHHHhhh
Q 008254 51 NEALSAFSDKPENFHVAIVEV-T---------TSNTDGSFKFLETAKDLPTII-TSNIHC-----LSTMMKCIAIMVMNQ 114 (572)
Q Consensus 51 ~EAL~~L~e~~~~pDLVIvDv-~---------mPd~mdG~~lLe~IrdlPVIi-LS~~~d-----~~~~~kai~~~~~~~ 114 (572)
..|++.+.+. +..+|+|+.. . ..+ +..+..+++.-++||++ -+-... ......|+.
T Consensus 149 ~~Ave~i~~~-Gn~~i~l~~rG~s~y~~~~~~~~d-l~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva------ 220 (260)
T TIGR01361 149 LYAAEYILSS-GNGNVILCERGIRTFEKATRNTLD-LSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIA------ 220 (260)
T ss_pred HHHHHHHHHc-CCCcEEEEECCCCCCCCCCcCCcC-HHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHH------
Q ss_pred hccccccCCccE-EEeC-------------CCCHHHHHHHHHHHHH
Q 008254 115 LFDNNFQLGAVE-FLRK-------------PLSEDKLRNLWQHVVH 146 (572)
Q Consensus 115 ~~~~~~~~GA~d-YL~K-------------Pvs~eeL~~~~q~Vlr 146 (572)
+||++ +|-| -+++++|...++.+.+
T Consensus 221 -------~Ga~gl~iE~H~t~d~a~~D~~~sl~p~~l~~lv~~i~~ 259 (260)
T TIGR01361 221 -------AGADGLMIEVHPDPEKALSDSKQQLTPEEFKRLVKELRA 259 (260)
T ss_pred -------cCCCEEEEEeCCCccccCCcchhcCCHHHHHHHHHHHhh
No 473
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=26.62 E-value=6.3e+02 Score=30.73 Aligned_cols=118 Identities=9% Similarity=0.049 Sum_probs=75.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC----CCEEE-EECCHHHHHHH----------------hhcCCCCeeEEEEeCCCC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAM----DYIVS-TFYNENEALSA----------------FSDKPENFHVAIVEVTTS 74 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~----gy~V~-ta~~a~EAL~~----------------L~e~~~~pDLVIvDv~mP 74 (572)
...+|+|...++.....+...++.. |.+|. .+.++.|.++. +.. +-+|++++|++--
T Consensus 236 ~~vnI~vhGHnp~l~~~iv~~~~~~el~~gI~~~GiCCTg~e~~R~~~g~~~~Gn~~~qe~~i~T--GavD~~VvD~QCi 313 (781)
T PRK00941 236 SKPVILVIGHNVAPGTYIIDYLEENGLTDKVEVCGICCTAIDITRYSEKAKVVGPLSKQLKFIRS--GIPDVIVVDEQCV 313 (781)
T ss_pred CCcEEEEECCCchHHHHHHHHHhCcchhhCceEEEEecccchHhhhccCCcccCcHHHHHHHHHc--CCCcEEEEecccC
Confidence 4578999999999999999998743 56655 88888887633 344 5689999999765
Q ss_pred CCCChHHHHHHhcCCcEEEEeCC----------CChHHHHHHHHHHHhhhhccccccCCcc-EEEeCCCCHHHHHHHHHH
Q 008254 75 NTDGSFKFLETAKDLPTIITSNI----------HCLSTMMKCIAIMVMNQLFDNNFQLGAV-EFLRKPLSEDKLRNLWQH 143 (572)
Q Consensus 75 d~mdG~~lLe~IrdlPVIiLS~~----------~d~~~~~kai~~~~~~~~~~~~~~~GA~-dYL~KPvs~eeL~~~~q~ 143 (572)
- -+-.++.+.. .+++|-+|.. .+.+.+.+.+. +.|.- -+|+-|.-.-|+.-.+..
T Consensus 314 ~-p~L~eiA~~y-gt~lItTs~k~~~eLPdit~~die~Ii~~L~------------~~~~~g~~i~~~~k~g~~a~~~a~ 379 (781)
T PRK00941 314 R-TDILEEAKKL-GIPVIATNDKICLGLPDRTDEDVDEIIEDLV------------SGKIPGALILDPEKVGEVAVRVAK 379 (781)
T ss_pred c-ccHHHHHHHh-CCCEEEecccccccCCCCCccCHHHHHHHHH------------hCCCCeeEEecHHHHHHHHHHHHH
Confidence 4 2333333222 5666666543 44566666655 14544 455556666666555544
Q ss_pred HHHHHH
Q 008254 144 VVHKAF 149 (572)
Q Consensus 144 Vlrr~~ 149 (572)
.+...+
T Consensus 380 ~~~~~r 385 (781)
T PRK00941 380 AVAPIR 385 (781)
T ss_pred HHhhhh
Confidence 444433
No 474
>PLN02939 transferase, transferring glycosyl groups
Probab=26.62 E-value=4.6e+02 Score=32.67 Aligned_cols=116 Identities=9% Similarity=0.034 Sum_probs=65.6
Q ss_pred ccEEEEEeCCH--HHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CC
Q 008254 17 GLRVLLLDQDS--SAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DL 89 (572)
Q Consensus 17 ~lRVLVVDDD~--~~~~~L~~lL~~~gy--~V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dl 89 (572)
+.+++|+.+-+ .....+..+....+. .|.... +...+-.++.. .|++|+=-. -. .-|+-.++.++ .+
T Consensus 808 dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAa----ADIFLmPSr-~E-PfGLvqLEAMAyGt 881 (977)
T PLN02939 808 GGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAA----SDMFIIPSM-FE-PCGLTQMIAMRYGS 881 (977)
T ss_pred CCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHh----CCEEEECCC-cc-CCcHHHHHHHHCCC
Confidence 46778887653 344556666555432 344332 32223344444 588886322 23 35777888887 57
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
|+|+....+-.+++...-. ....+.|..+|+..|-+.+.|..++..++.
T Consensus 882 PPVVs~vGGL~DtV~d~d~--------e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 882 VPIVRKTGGLNDSVFDFDD--------ETIPVELRNGFTFLTPDEQGLNSALERAFN 930 (977)
T ss_pred CEEEecCCCCcceeecCCc--------cccccCCCceEEecCCCHHHHHHHHHHHHH
Confidence 7776443333333322100 000124789999999999999998887765
No 475
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=26.39 E-value=1.8e+02 Score=30.91 Aligned_cols=72 Identities=10% Similarity=0.130 Sum_probs=43.9
Q ss_pred cEEEEEeCCHHH---HHHHHHHHHhCCCEEEEE---------CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHH
Q 008254 18 LRVLLLDQDSSA---AAELKFKLEAMDYIVSTF---------YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLET 85 (572)
Q Consensus 18 lRVLVVDDD~~~---~~~L~~lL~~~gy~V~ta---------~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~ 85 (572)
-|+|||-|.... .+.+...|+..|..+..+ .+..++.+..++ .++|+||. +-+ ...++..+.
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~d~iia---vGG-Gs~~D~aK~ 96 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAV--QEADMIFA---VGG-GKAIDTVKV 96 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhh--cCCCEEEE---eCC-cHHHHHHHH
Confidence 689999886543 345666677666544322 244566677777 78999985 233 233444443
Q ss_pred h---cCCcEEEEe
Q 008254 86 A---KDLPTIITS 95 (572)
Q Consensus 86 I---rdlPVIiLS 95 (572)
+ ..+|+|.+-
T Consensus 97 ia~~~~~p~i~VP 109 (345)
T cd08171 97 LADKLGKPVFTFP 109 (345)
T ss_pred HHHHcCCCEEEec
Confidence 3 367877763
No 476
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=26.39 E-value=3.2e+02 Score=27.87 Aligned_cols=66 Identities=5% Similarity=0.055 Sum_probs=45.9
Q ss_pred CHHHHHHHhhcCCCCe-eEEEEeCCCCCCCCh--HHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCC
Q 008254 49 NENEALSAFSDKPENF-HVAIVEVTTSNTDGS--FKFLETAK--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLG 123 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~p-DLVIvDv~mPd~mdG--~~lLe~Ir--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~G 123 (572)
+..+.++.+.+ ..+ .++++|+.--+++.| +++++.+. ..++|+--+-.+.+.+.++.+ .|
T Consensus 147 ~~~e~~~~l~~--~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~~~~viasGGv~s~~Dl~~l~~-------------~G 211 (232)
T PRK13586 147 EVIDGIKKVNE--LELLGIIFTYISNEGTTKGIDYNVKDYARLIRGLKEYAGGVSSDADLEYLKN-------------VG 211 (232)
T ss_pred CHHHHHHHHHh--cCCCEEEEecccccccCcCcCHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH-------------CC
Confidence 56677777777 444 799999988775566 45677775 344555344566677777777 89
Q ss_pred ccEEEe
Q 008254 124 AVEFLR 129 (572)
Q Consensus 124 A~dYL~ 129 (572)
+++.++
T Consensus 212 ~~gviv 217 (232)
T PRK13586 212 FDYIIV 217 (232)
T ss_pred CCEEEE
Confidence 998876
No 477
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=26.35 E-value=3e+02 Score=26.90 Aligned_cols=63 Identities=10% Similarity=0.170 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhC---CC--EEEEEC---C---HHHHHHHhhcCCCCeeEEEEeCCCCCCCChH-HHHHHhc--CCcEEEE
Q 008254 29 AAAELKFKLEAM---DY--IVSTFY---N---ENEALSAFSDKPENFHVAIVEVTTSNTDGSF-KFLETAK--DLPTIIT 94 (572)
Q Consensus 29 ~~~~L~~lL~~~---gy--~V~ta~---~---a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~-~lLe~Ir--dlPVIiL 94 (572)
+...++..+++. || ++..+. + ..++++.+.. ..+|.||+...-+ +.+ +.+..+. .+|||++
T Consensus 17 ~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~--~~vdgiIi~~~~~---~~~~~~l~~~~~~~iPvv~~ 91 (272)
T cd06300 17 MLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIA--QGVDAIIINPASP---TALNPVIEEACEAGIPVVSF 91 (272)
T ss_pred HHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHH--cCCCEEEEeCCCh---hhhHHHHHHHHHCCCeEEEE
Confidence 455667777788 98 455543 2 2355566666 6899888854222 222 3555554 7899988
Q ss_pred eC
Q 008254 95 SN 96 (572)
Q Consensus 95 S~ 96 (572)
-.
T Consensus 92 ~~ 93 (272)
T cd06300 92 DG 93 (272)
T ss_pred ec
Confidence 54
No 478
>COG2771 CsgD DNA-binding HTH domain-containing proteins [Transcription]
Probab=26.28 E-value=43 Score=25.88 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=29.4
Q ss_pred CCCChhHHHHHHHHHhcchhhhhhccccccccccc
Q 008254 158 DSLKPVKESVVSMLHLKLENGESKNEKSENTEYVL 192 (572)
Q Consensus 158 ~sLt~RE~eVL~ll~~~len~e~~~e~s~~~e~v~ 192 (572)
..||++|.+++.++..|..+.+......++..+|.
T Consensus 3 ~~Lt~rE~~v~~l~~~G~s~~eia~~l~is~~tV~ 37 (65)
T COG2771 3 ADLTPREREILRLVAQGKSNKEIARILGISEETVK 37 (65)
T ss_pred ccCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHH
Confidence 45899999999999999999998887777766654
No 479
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=26.26 E-value=2.3e+02 Score=23.73 Aligned_cols=66 Identities=18% Similarity=0.289 Sum_probs=41.0
Q ss_pred CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEE
Q 008254 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEF 127 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dY 127 (572)
.+.+.|+.+... ..+.+..+|+. +.-++.++-. ++|||.+.+... ......
T Consensus 15 ~a~~~L~~~~~~-~~~~l~~vDI~-----~d~~l~~~Y~~~IPVl~~~~~~~----------------------~~~~~~ 66 (81)
T PF05768_consen 15 EAKEILEEVAAE-FPFELEEVDID-----EDPELFEKYGYRIPVLHIDGIRQ----------------------FKEQEE 66 (81)
T ss_dssp HHHHHHHHCCTT-STCEEEEEETT-----TTHHHHHHSCTSTSEEEETT-GG----------------------GCTSEE
T ss_pred HHHHHHHHHHhh-cCceEEEEECC-----CCHHHHHHhcCCCCEEEEcCccc----------------------ccccce
Confidence 455556555432 56889999996 2344556555 899998876321 111456
Q ss_pred EeCCCCHHHHHHHHH
Q 008254 128 LRKPLSEDKLRNLWQ 142 (572)
Q Consensus 128 L~KPvs~eeL~~~~q 142 (572)
+--|++.++|.+.++
T Consensus 67 ~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 67 LKWRFDEEQLRAWLE 81 (81)
T ss_dssp EESSB-HHHHHHHHH
T ss_pred eCCCCCHHHHHHHhC
Confidence 677888888887653
No 480
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.26 E-value=3.1e+02 Score=26.40 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCEEEEECC-----HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN-----ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~-----a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
+...+...+++.||.+..+.. ..+.++.+.. ..+|.+|+....++ . ..++.+. .+|+|++-.
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~--~~vdgiii~~~~~~---~-~~~~~~~~~~ipvV~~~~ 85 (266)
T cd06278 17 LLEALSRALQARGYQPLLINTDDDEDLDAALRQLLQ--YRVDGVIVTSGTLS---S-ELAEECRRNGIPVVLINR 85 (266)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHH--cCCCEEEEecCCCC---H-HHHHHHhhcCCCEEEECC
Confidence 455677778888998764432 2244555555 57888887543333 2 3355553 789998854
No 481
>PRK06101 short chain dehydrogenase; Provisional
Probab=26.20 E-value=2.8e+02 Score=27.02 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=44.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir 87 (572)
-.|||..-..-+-..+...|...|++|..+....+.++.+.........+.+|+.-++ +--++++.+.
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~--~~~~~~~~~~ 69 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHP--GTKAALSQLP 69 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHH--HHHHHHHhcc
Confidence 3588888888898899999988899988666555555555431124566677775443 3344555543
No 482
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=26.09 E-value=3.4e+02 Score=27.10 Aligned_cols=65 Identities=11% Similarity=0.156 Sum_probs=43.5
Q ss_pred HHHHHHHhhcCCCCee-EEEEeCCCCCC--CChHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccC-
Q 008254 50 ENEALSAFSDKPENFH-VAIVEVTTSNT--DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQL- 122 (572)
Q Consensus 50 a~EAL~~L~e~~~~pD-LVIvDv~mPd~--mdG~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~- 122 (572)
..+.++.+.+ ..+| +++.++.--++ .-.++++++++ ++|||+.-+..+.+.+.+++. .
T Consensus 151 ~~~~~~~l~~--~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~-------------~~ 215 (243)
T cd04731 151 AVEWAKEVEE--LGAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFE-------------EG 215 (243)
T ss_pred HHHHHHHHHH--CCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHH-------------hC
Confidence 3444555665 5677 55555442111 12367777775 799998888888899998888 5
Q ss_pred CccEEEe
Q 008254 123 GAVEFLR 129 (572)
Q Consensus 123 GA~dYL~ 129 (572)
|++..++
T Consensus 216 g~dgv~v 222 (243)
T cd04731 216 GADAALA 222 (243)
T ss_pred CCCEEEE
Confidence 8887766
No 483
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=26.03 E-value=1.1e+02 Score=31.15 Aligned_cols=38 Identities=24% Similarity=0.201 Sum_probs=34.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHH
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEAL 54 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL 54 (572)
+++|.|||=..--+..+.+.|++.|+++....+.++..
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i~ 38 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEIL 38 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHHh
Confidence 47899999999999999999999999999999988843
No 484
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=26.02 E-value=1.6e+02 Score=28.88 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=33.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIv 69 (572)
|+|+|||-..-....+.+.|++.|+++..+.+.++ +. .+|.||+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~----~~----~~d~iIl 44 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDV----IL----AADKLFL 44 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHH----hC----CCCEEEE
Confidence 57999997777777788899999999998887754 22 3577774
No 485
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=25.95 E-value=7.7e+02 Score=25.69 Aligned_cols=47 Identities=9% Similarity=0.132 Sum_probs=27.8
Q ss_pred HHHHhc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 82 FLETAK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 82 lLe~Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
++|.+. .+|+|.+...+... +.+. .|.. +++ +.+.++|..++..++.
T Consensus 286 ~~EA~a~g~PvI~~~~~~~~~---e~~~-------------~g~~-~lv-~~d~~~i~~ai~~ll~ 333 (365)
T TIGR00236 286 QEEAPSLGKPVLVLRDTTERP---ETVE-------------AGTN-KLV-GTDKENITKAAKRLLT 333 (365)
T ss_pred HHHHHHcCCCEEECCCCCCCh---HHHh-------------cCce-EEe-CCCHHHHHHHHHHHHh
Confidence 444443 78888774333222 2222 4543 444 6788999998887764
No 486
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=25.89 E-value=2.5e+02 Score=28.06 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=52.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHhhcCCCCeeEEEEeC-CCCCCCChHHHHHHhc---C
Q 008254 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFY-------NENEALSAFSDKPENFHVAIVEV-TTSNTDGSFKFLETAK---D 88 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~~gy~V~ta~-------~a~EAL~~L~e~~~~pDLVIvDv-~mPd~mdG~~lLe~Ir---d 88 (572)
|||=|-|...++.++..-+..|-++.+.+ ++++.++++.+.++.|=+|++|- ...+...|-+.++.+. +
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~ 82 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANHPD 82 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcCCC
Confidence 56667788888888888888888777544 78999999988666666666654 3333234566666664 2
Q ss_pred ---CcEEEEeCC
Q 008254 89 ---LPTIITSNI 97 (572)
Q Consensus 89 ---lPVIiLS~~ 97 (572)
+-+|.++++
T Consensus 83 IeVLG~iAVASn 94 (180)
T PF14097_consen 83 IEVLGAIAVASN 94 (180)
T ss_pred ceEEEEEEEEec
Confidence 444555543
No 487
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.89 E-value=3.2e+02 Score=27.69 Aligned_cols=64 Identities=8% Similarity=0.095 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCC--CeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPE--NFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~--~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
+...++..+++.||.+..+.. . .++++.+.. . .+|-||+- +......++++.++ .+|||++-..
T Consensus 18 ~~~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~--~~~~vdgiIi~---~~~~~~~~~~~~~~~~giPvV~~~~~ 91 (305)
T cd06324 18 VARFMQAAADDLGIELEVLYAERDRFLMLQQARTILQ--RPDKPDALIFT---NEKSVAPELLRLAEGAGVKLFLVNSG 91 (305)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHH--hccCCCEEEEc---CCccchHHHHHHHHhCCCeEEEEecC
Confidence 455677777788998765432 2 245666666 5 89988872 22012334566664 7899988653
No 488
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=25.80 E-value=2.7e+02 Score=29.56 Aligned_cols=53 Identities=13% Similarity=0.001 Sum_probs=37.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE---E-EEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYI---V-STFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~---V-~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
.+|+-||-....++..+.-+.-.|+. + ....+.-+.|+.++.. ..||+||+|-
T Consensus 147 ~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~-~~fD~IIlDP 203 (286)
T PF10672_consen 147 KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKG-GRFDLIILDP 203 (286)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHT-T-EEEEEE--
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcC-CCCCEEEECC
Confidence 36999999999999988888877652 3 3677888888877653 6899999995
No 489
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=25.70 E-value=4.1e+02 Score=27.73 Aligned_cols=85 Identities=18% Similarity=0.065 Sum_probs=53.3
Q ss_pred HHHHHHHHHhCCCEE-EEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCC-hHHHHHHh----c-CCcEEEEeCCCChHH
Q 008254 30 AAELKFKLEAMDYIV-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETA----K-DLPTIITSNIHCLST 102 (572)
Q Consensus 30 ~~~L~~lL~~~gy~V-~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~md-G~~lLe~I----r-dlPVIiLS~~~d~~~ 102 (572)
+..|-..-...|.++ +.+.+.+|+-.++.. ..++|=++-+-..+.. .++....+ . ++.+|.-|+..+.+.
T Consensus 147 l~~l~~~a~~lGle~lVEVh~~~El~~al~~---~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d 223 (254)
T PF00218_consen 147 LEELLELAHSLGLEALVEVHNEEELERALEA---GADIIGINNRDLKTFEVDLNRTEELAPLIPKDVIVISESGIKTPED 223 (254)
T ss_dssp HHHHHHHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEESBCTTTCCBHTHHHHHHHCHSHTTSEEEEESS-SSHHH
T ss_pred HHHHHHHHHHcCCCeEEEECCHHHHHHHHHc---CCCEEEEeCccccCcccChHHHHHHHhhCccceeEEeecCCCCHHH
Confidence 345555556678865 589999998888865 5677666554332121 12222222 2 667777888888888
Q ss_pred HHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 103 MMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 103 ~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
+.+... .|++++|+-
T Consensus 224 ~~~l~~-------------~G~davLVG 238 (254)
T PF00218_consen 224 ARRLAR-------------AGADAVLVG 238 (254)
T ss_dssp HHHHCT-------------TT-SEEEES
T ss_pred HHHHHH-------------CCCCEEEEC
Confidence 888777 999999984
No 490
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein.
Probab=25.70 E-value=1.8e+02 Score=28.17 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=40.2
Q ss_pred cCCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 12 KDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 12 ~~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
+++ ++.+|.++.+.... ..+...+.. +..+..+.+.++++++|.. ++.|++|.|.
T Consensus 127 ~dl-~g~~i~~~~g~~~~-~~l~~~~~~-~~~~~~~~s~~~~~~~L~~--g~vD~~v~~~ 181 (250)
T TIGR01096 127 EDL-DGKTVGVQSGTTHE-QYLKDYFKP-GVDIVEYDSYDNANMDLKA--GRIDAVFTDA 181 (250)
T ss_pred HHc-CCCEEEEecCchHH-HHHHHhccC-CcEEEEcCCHHHHHHHHHc--CCCCEEEeCH
Confidence 344 36788888765543 334444443 6677888999999999999 8999999875
No 491
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.49 E-value=4.7e+02 Score=27.19 Aligned_cols=96 Identities=14% Similarity=0.123 Sum_probs=56.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHhhcCCCCeeEE--EEeCCCCCC-----CChHHHHHHhc--
Q 008254 20 VLLLDQDSSAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVA--IVEVTTSNT-----DGSFKFLETAK-- 87 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~~gy~V~t---a~~a~EAL~~L~e~~~~pDLV--IvDv~mPd~-----mdG~~lLe~Ir-- 87 (572)
|+|.|=-......+...+++.|...+. -++..+=++.+.+ ...+.| +.-....+. .+..++++.++
T Consensus 121 viipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~--~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~ 198 (258)
T PRK13111 121 LIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIAS--HASGFVYYVSRAGVTGARSADAADLAELVARLKAH 198 (258)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH--hCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhc
Confidence 555555555666777777777764432 2233344444444 222322 222221220 13455777776
Q ss_pred -CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCC
Q 008254 88 -DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKP 131 (572)
Q Consensus 88 -dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KP 131 (572)
++||++=.+..+.+.+.+++. . |++.++-.
T Consensus 199 ~~~pv~vGfGI~~~e~v~~~~~-------------~-ADGviVGS 229 (258)
T PRK13111 199 TDLPVAVGFGISTPEQAAAIAA-------------V-ADGVIVGS 229 (258)
T ss_pred CCCcEEEEcccCCHHHHHHHHH-------------h-CCEEEEcH
Confidence 899998888888888888776 5 89988865
No 492
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=25.47 E-value=2.2e+02 Score=29.64 Aligned_cols=92 Identities=15% Similarity=0.074 Sum_probs=58.8
Q ss_pred EEEEEeCCHHHHHHHHHH----HHhCC---CEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---C
Q 008254 19 RVLLLDQDSSAAAELKFK----LEAMD---YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---D 88 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~l----L~~~g---y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---d 88 (572)
.|||-|++-.+...+... -+..+ ...+.+.+.+|+.+.+.. .+|+|.+|-.-|+ +--++++.++ +
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~---gaD~I~ld~~~~e--~l~~~v~~i~~~~~ 227 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEA---GADIIMLDNMSPE--ELKEAVKLLKGLPR 227 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhccCCC
Confidence 477777765554433322 22233 244588999999999876 6899999875443 2222444444 3
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 89 LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
+| |+.++.-+.+.+.+... .||+.+-+
T Consensus 228 i~-i~asGGIt~~ni~~~a~-------------~Gad~Isv 254 (269)
T cd01568 228 VL-LEASGGITLENIRAYAE-------------TGVDVIST 254 (269)
T ss_pred eE-EEEECCCCHHHHHHHHH-------------cCCCEEEE
Confidence 44 55666677888888887 89887754
No 493
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=25.31 E-value=3.8e+02 Score=28.59 Aligned_cols=64 Identities=8% Similarity=0.145 Sum_probs=35.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHh---CCCEEEEEC-----------CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHH
Q 008254 19 RVLLLDQDSSAAAELKFKLEA---MDYIVSTFY-----------NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLE 84 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~---~gy~V~ta~-----------~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe 84 (572)
+|.|+-|+..-+..+..+++. .|++|.... +....|..++. ..+++||+|.... +...+++
T Consensus 120 ~vailYdsd~gl~~lq~l~~~~~~~g~~V~~~~~~~i~~~~~~~d~~~~L~~ik~--~~~~~Iil~~~~~---~~~~il~ 194 (370)
T cd06389 120 KFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDRKDEAYRSLFQDLEN--KKERRVILDCERD---KVNDIVD 194 (370)
T ss_pred EEEEEecCchHHHHHHHHHHhhccCCceEEEEEeecCCCccchHHHHHHHHHhcc--ccceEEEEECCHH---HHHHHHH
Confidence 344433344555555555544 466554211 33445555655 6788888887643 3667777
Q ss_pred Hhc
Q 008254 85 TAK 87 (572)
Q Consensus 85 ~Ir 87 (572)
+++
T Consensus 195 qa~ 197 (370)
T cd06389 195 QVI 197 (370)
T ss_pred HHH
Confidence 665
No 494
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=25.28 E-value=7.8e+02 Score=25.70 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=46.8
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEeCCCC-----CCCChHHHHHHhc-----CCcEEEEeCCCChHHHHHHHHHHHhhhh
Q 008254 46 TFYNENEALSAFSDKPENFHVAIVEVTTS-----NTDGSFKFLETAK-----DLPTIITSNIHCLSTMMKCIAIMVMNQL 115 (572)
Q Consensus 46 ta~~a~EAL~~L~e~~~~pDLVIvDv~mP-----d~mdG~~lLe~Ir-----dlPVIiLS~~~d~~~~~kai~~~~~~~~ 115 (572)
.+.+.++|..+... ..|.|++.-+-- + ...++++..++ ++|||.--+..+...+.+++.
T Consensus 179 ~v~s~~~a~~a~~~---G~d~I~v~~~gG~~~~~g-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~------- 247 (299)
T cd02809 179 GILTPEDALRAVDA---GADGIVVSNHGGRQLDGA-PATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALA------- 247 (299)
T ss_pred ecCCHHHHHHHHHC---CCCEEEEcCCCCCCCCCC-cCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHH-------
Confidence 34566676655544 677777654221 1 12355665553 599999999999999999999
Q ss_pred ccccccCCccEEEeC
Q 008254 116 FDNNFQLGAVEFLRK 130 (572)
Q Consensus 116 ~~~~~~~GA~dYL~K 130 (572)
+||+...+=
T Consensus 248 ------lGAd~V~ig 256 (299)
T cd02809 248 ------LGADAVLIG 256 (299)
T ss_pred ------cCCCEEEEc
Confidence 999988764
No 495
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=25.19 E-value=2.2e+02 Score=29.69 Aligned_cols=64 Identities=22% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCCeeEEEEe-------CC---CCCCCChHHHHHHhcCCcEEE-EeCCCCh-----HHHHHHHHHHHhhh
Q 008254 51 NEALSAFSDKPENFHVAIVE-------VT---TSNTDGSFKFLETAKDLPTII-TSNIHCL-----STMMKCIAIMVMNQ 114 (572)
Q Consensus 51 ~EAL~~L~e~~~~pDLVIvD-------v~---mPd~mdG~~lLe~IrdlPVIi-LS~~~d~-----~~~~kai~~~~~~~ 114 (572)
..|++.+.+. +..+|+|+. .. ..| +.++..+++.-++|||+ .|-.... .....|+.
T Consensus 139 ~~A~e~i~~~-Gn~~i~L~eRg~~~Y~~~~~n~~d-l~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA------ 210 (250)
T PRK13397 139 LGALSYLQDT-GKSNIILCERGVRGYDVETRNMLD-IMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKA------ 210 (250)
T ss_pred HHHHHHHHHc-CCCeEEEEccccCCCCCccccccC-HHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHH------
Q ss_pred hccccccCCccEEEe
Q 008254 115 LFDNNFQLGAVEFLR 129 (572)
Q Consensus 115 ~~~~~~~~GA~dYL~ 129 (572)
+||++.++
T Consensus 211 -------~GAdGl~I 218 (250)
T PRK13397 211 -------VGANGIMM 218 (250)
T ss_pred -------hCCCEEEE
No 496
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=25.09 E-value=87 Score=35.74 Aligned_cols=75 Identities=9% Similarity=0.120 Sum_probs=45.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHhhcCCCCeeEEEEeCCC--CC-CCChHHHHHHhc-CCcEEE
Q 008254 19 RVLLLDQDSSAAAELKFKLEAMDYI-VSTFYNENEALSAFSDKPENFHVAIVEVTT--SN-TDGSFKFLETAK-DLPTII 93 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~~gy~-V~ta~~a~EAL~~L~e~~~~pDLVIvDv~m--Pd-~mdG~~lLe~Ir-dlPVIi 93 (572)
+|||||....+--.|..+|++.|+. |........-++.+.. ..||.||+-=.- |. ...-.++++.+. .+||+=
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~--~~~d~vIlsgGP~~p~~~~~~~~li~~~~~~~PvLG 78 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEA--LNPSHIVISPGPGRPEEAGISVEVIRHFSGKVPILG 78 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHh--cCCCEEEECCCCCChhhCCccHHHHHHhhcCCCEEE
Confidence 4999999999999999999999885 6655322211333444 467877753210 11 011244555543 688876
Q ss_pred Ee
Q 008254 94 TS 95 (572)
Q Consensus 94 LS 95 (572)
+.
T Consensus 79 IC 80 (534)
T PRK14607 79 VC 80 (534)
T ss_pred Ec
Confidence 53
No 497
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.96 E-value=4.9e+02 Score=30.44 Aligned_cols=55 Identities=11% Similarity=0.182 Sum_probs=33.5
Q ss_pred ccEEEEEeCCHHHH---HHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCC
Q 008254 17 GLRVLLLDQDSSAA---AELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVT 72 (572)
Q Consensus 17 ~lRVLVVDDD~~~~---~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~ 72 (572)
+.+|.+|+-|..-. +.|...-+..++.+..+.+..+..+.++.. ..+|+||+|.-
T Consensus 380 gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~~~DLVLIDTa 437 (559)
T PRK12727 380 PRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-RDYKLVLIDTA 437 (559)
T ss_pred CCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-ccCCEEEecCC
Confidence 35788888765322 223333334466666666666666666543 45899999973
No 498
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=24.79 E-value=8.9e+02 Score=26.68 Aligned_cols=97 Identities=15% Similarity=0.082 Sum_probs=0.0
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHhhcCCCCeeEEEEe-----CCCCCCCCh-----
Q 008254 17 GLRVLLLD----QDSSAAAELKFKLEAMDYIVSTFY---NENEALSAFSDKPENFHVAIVE-----VTTSNTDGS----- 79 (572)
Q Consensus 17 ~lRVLVVD----DD~~~~~~L~~lL~~~gy~V~ta~---~a~EAL~~L~e~~~~pDLVIvD-----v~mPd~mdG----- 79 (572)
++.+++|| ......+.++.+=+...-..+.+. +.+.|..++.. ..|.|.+- ++.....+|
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~a---GAD~ikVgiGpGSicttR~~~Gvg~pq 197 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILS---GADIVKVGIGPGSVCTTRTKTGVGYPQ 197 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHc---CCCEEEEcccCCCcccCceeCCCCcCH
Q ss_pred HHHHHHhc------CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 80 FKFLETAK------DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 80 ~~lLe~Ir------dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
+..+..+. ++|||+-.+......+.+|+. +||+..++
T Consensus 198 ltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA-------------~GAd~VMl 240 (343)
T TIGR01305 198 LSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFG-------------AGADFVML 240 (343)
T ss_pred HHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHH-------------cCCCEEEE
No 499
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=24.74 E-value=1.7e+02 Score=31.67 Aligned_cols=63 Identities=10% Similarity=0.064 Sum_probs=40.8
Q ss_pred HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-C---CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccE
Q 008254 51 NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-D---LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVE 126 (572)
Q Consensus 51 ~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-d---lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~d 126 (572)
+++.+++... -.+|+|.+|+..++.....++++.++ . ++||+ -.-.+.+.+..++. +||+.
T Consensus 100 ~~~~~Lv~ag-~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~-g~V~t~e~a~~l~~-------------aGad~ 164 (326)
T PRK05458 100 DFVDQLAAEG-LTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA-GNVGTPEAVRELEN-------------AGADA 164 (326)
T ss_pred HHHHHHHhcC-CCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE-EecCCHHHHHHHHH-------------cCcCE
Confidence 4455555541 14599999998876334466778887 2 44433 23457788888888 99888
Q ss_pred EE
Q 008254 127 FL 128 (572)
Q Consensus 127 YL 128 (572)
.+
T Consensus 165 i~ 166 (326)
T PRK05458 165 TK 166 (326)
T ss_pred EE
Confidence 65
No 500
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.72 E-value=4.3e+02 Score=25.85 Aligned_cols=76 Identities=9% Similarity=0.106 Sum_probs=49.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEE-CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCc
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTF-YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta-~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlP 90 (572)
.+..|||..-..-+-..+...|.+.|+.|... .+.++.++.+.. ..+..+.+|+.-++ +--++++.+. .+-
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~--~~~~~~~~Dl~~~~--~~~~~~~~~~~~~~~id 81 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELRE--KGVFTIKCDVGNRD--QVKKSKEVVEKEFGRVD 81 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHh--CCCeEEEecCCCHH--HHHHHHHHHHHHcCCCC
Confidence 45689999999999999999999999988754 445556666665 34555666664332 2334444442 345
Q ss_pred EEEEe
Q 008254 91 TIITS 95 (572)
Q Consensus 91 VIiLS 95 (572)
+|+..
T Consensus 82 ~li~~ 86 (255)
T PRK06463 82 VLVNN 86 (255)
T ss_pred EEEEC
Confidence 55543
Done!