Query 008254
Match_columns 572
No_of_seqs 406 out of 2424
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 21:50:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 7.7E-29 2.6E-33 200.8 7.1 62 327-388 2-63 (64)
2 3to5_A CHEY homolog; alpha(5)b 99.9 7.7E-24 2.6E-28 192.6 14.8 118 14-147 9-133 (134)
3 1yio_A Response regulatory pro 99.9 5E-21 1.7E-25 178.2 14.4 160 15-190 2-173 (208)
4 3r0j_A Possible two component 99.8 3.5E-20 1.2E-24 179.0 18.5 144 15-174 21-191 (250)
5 3gl9_A Response regulator; bet 99.8 4.7E-20 1.6E-24 158.6 16.4 113 18-146 3-121 (122)
6 1a04_A Nitrate/nitrite respons 99.8 3.7E-20 1.3E-24 173.6 16.6 158 16-189 4-184 (215)
7 3t6k_A Response regulator rece 99.8 6.2E-20 2.1E-24 160.6 16.4 117 16-148 3-125 (136)
8 3rqi_A Response regulator prot 99.8 1.8E-20 6E-25 173.2 13.6 142 16-173 6-153 (184)
9 3f6p_A Transcriptional regulat 99.8 7E-20 2.4E-24 156.7 15.2 113 18-146 3-118 (120)
10 3q9s_A DNA-binding response re 99.8 3.1E-20 1.1E-24 180.9 14.5 151 16-182 36-209 (249)
11 2lpm_A Two-component response 99.8 3.2E-22 1.1E-26 179.9 -0.7 111 16-145 7-120 (123)
12 1kgs_A DRRD, DNA binding respo 99.8 1E-19 3.4E-24 171.0 16.1 151 17-183 2-179 (225)
13 3gt7_A Sensor protein; structu 99.8 4.5E-19 1.6E-23 158.3 17.1 119 16-150 6-130 (154)
14 3crn_A Response regulator rece 99.8 7.1E-19 2.4E-23 152.5 17.2 117 17-149 3-123 (132)
15 3jte_A Response regulator rece 99.8 1.1E-18 3.6E-23 152.3 18.1 122 16-151 2-127 (143)
16 3hv2_A Response regulator/HD d 99.8 8E-19 2.7E-23 155.8 17.5 123 12-150 9-136 (153)
17 3m6m_D Sensory/regulatory prot 99.8 4.7E-19 1.6E-23 156.6 15.8 117 15-147 12-136 (143)
18 2pl1_A Transcriptional regulat 99.8 1.1E-18 3.8E-23 147.2 17.4 114 18-147 1-118 (121)
19 1ys7_A Transcriptional regulat 99.8 2.9E-19 1E-23 168.7 15.2 152 16-183 6-187 (233)
20 1dbw_A Transcriptional regulat 99.8 1.3E-18 4.4E-23 149.0 17.6 115 17-147 3-121 (126)
21 3c3w_A Two component transcrip 99.8 3.5E-20 1.2E-24 176.7 8.4 157 17-189 1-179 (225)
22 3h1g_A Chemotaxis protein CHEY 99.8 7.5E-19 2.6E-23 151.7 15.7 115 17-146 5-126 (129)
23 2qzj_A Two-component response 99.8 1.2E-18 4E-23 152.5 16.0 118 16-149 3-123 (136)
24 2oqr_A Sensory transduction pr 99.8 3.9E-19 1.3E-23 167.9 13.9 150 18-183 5-184 (230)
25 2a9o_A Response regulator; ess 99.8 1.3E-18 4.6E-23 146.2 15.4 114 18-147 2-118 (120)
26 3grc_A Sensor protein, kinase; 99.8 5.2E-19 1.8E-23 153.7 13.1 120 15-150 4-130 (140)
27 1jbe_A Chemotaxis protein CHEY 99.8 3E-18 1E-22 146.4 17.5 116 16-147 3-125 (128)
28 2gwr_A DNA-binding response re 99.8 3.3E-19 1.1E-23 170.6 12.4 150 18-183 6-181 (238)
29 2r25_B Osmosensing histidine p 99.8 1.1E-18 3.8E-23 152.1 14.6 116 17-146 2-126 (133)
30 3heb_A Response regulator rece 99.8 2.3E-18 7.7E-23 152.4 16.7 119 14-148 1-136 (152)
31 3kht_A Response regulator; PSI 99.8 2.8E-18 9.7E-23 150.1 16.9 121 16-152 4-133 (144)
32 3eod_A Protein HNR; response r 99.8 1.4E-18 4.8E-23 149.1 14.6 117 16-148 6-127 (130)
33 1xhf_A DYE resistance, aerobic 99.8 3.6E-18 1.2E-22 144.9 17.0 116 17-148 3-121 (123)
34 1zgz_A Torcad operon transcrip 99.8 3.9E-18 1.3E-22 144.5 17.0 114 18-147 3-119 (122)
35 3nhm_A Response regulator; pro 99.8 1.6E-18 5.4E-23 149.0 14.5 119 14-150 1-125 (133)
36 3hdg_A Uncharacterized protein 99.8 1.5E-18 5E-23 150.3 14.3 120 16-151 6-129 (137)
37 3kto_A Response regulator rece 99.8 1.2E-18 4.2E-23 151.7 13.9 121 15-150 4-129 (136)
38 1tmy_A CHEY protein, TMY; chem 99.8 2.1E-18 7.2E-23 145.7 14.9 113 17-145 2-119 (120)
39 3hdv_A Response regulator; PSI 99.8 3E-18 1E-22 148.2 16.2 120 14-149 4-129 (136)
40 4e7p_A Response regulator; DNA 99.8 2.4E-18 8.1E-23 152.3 15.7 119 14-148 17-141 (150)
41 1srr_A SPO0F, sporulation resp 99.8 2.2E-18 7.4E-23 146.8 14.8 113 18-146 4-120 (124)
42 3i42_A Response regulator rece 99.8 8E-19 2.7E-23 150.1 12.1 116 16-148 2-123 (127)
43 3lua_A Response regulator rece 99.8 8E-19 2.7E-23 152.9 12.2 121 15-150 2-130 (140)
44 3snk_A Response regulator CHEY 99.8 2E-19 6.7E-24 156.2 8.3 118 14-147 11-133 (135)
45 1zh2_A KDP operon transcriptio 99.8 2.6E-18 8.8E-23 144.7 14.6 115 17-147 1-118 (121)
46 3b2n_A Uncharacterized protein 99.8 2.1E-18 7.1E-23 149.7 14.3 116 17-148 3-124 (133)
47 1p6q_A CHEY2; chemotaxis, sign 99.8 1.7E-18 5.7E-23 148.1 13.4 115 16-146 5-126 (129)
48 3cfy_A Putative LUXO repressor 99.8 2.7E-18 9.1E-23 150.4 15.0 116 18-149 5-124 (137)
49 3hzh_A Chemotaxis response reg 99.8 1.9E-18 6.5E-23 154.7 13.8 116 15-146 34-156 (157)
50 2qxy_A Response regulator; reg 99.8 2.7E-18 9.4E-23 149.5 14.3 119 14-149 1-123 (142)
51 3cnb_A DNA-binding response re 99.8 6.2E-18 2.1E-22 146.3 16.3 120 14-149 5-132 (143)
52 3kcn_A Adenylate cyclase homol 99.8 5.2E-18 1.8E-22 150.2 16.1 119 14-149 1-125 (151)
53 3h5i_A Response regulator/sens 99.8 1.8E-18 6.2E-23 151.3 13.0 120 16-150 4-127 (140)
54 1k68_A Phytochrome response re 99.8 1.4E-17 4.7E-22 142.8 17.9 120 17-150 2-134 (140)
55 1p2f_A Response regulator; DRR 99.8 3.5E-18 1.2E-22 160.7 15.4 149 17-184 2-174 (220)
56 2qr3_A Two-component system re 99.8 4.6E-18 1.6E-22 147.0 14.8 117 16-148 2-127 (140)
57 1i3c_A Response regulator RCP1 99.8 1.3E-17 4.4E-22 147.7 17.8 120 16-149 7-139 (149)
58 2zay_A Response regulator rece 99.8 3.6E-18 1.2E-22 149.5 13.5 118 16-149 7-130 (147)
59 3f6c_A Positive transcription 99.8 1.2E-18 4.3E-23 149.8 10.2 117 17-149 1-122 (134)
60 3klo_A Transcriptional regulat 99.8 2.3E-19 7.9E-24 170.4 5.9 157 16-188 6-188 (225)
61 1mb3_A Cell division response 99.8 5.5E-18 1.9E-22 143.6 13.8 113 18-146 2-120 (124)
62 1mvo_A PHOP response regulator 99.8 7E-18 2.4E-22 145.5 14.7 115 17-147 3-121 (136)
63 2rjn_A Response regulator rece 99.8 1.7E-17 6E-22 147.0 17.3 118 16-149 6-128 (154)
64 3c3m_A Response regulator rece 99.8 5.6E-18 1.9E-22 147.9 13.8 115 17-147 3-123 (138)
65 3cg0_A Response regulator rece 99.8 1.2E-17 4.2E-22 144.3 15.8 121 15-151 7-132 (140)
66 1dz3_A Stage 0 sporulation pro 99.8 5.1E-18 1.7E-22 146.0 13.1 114 18-147 3-123 (130)
67 1k66_A Phytochrome response re 99.8 2.8E-17 9.5E-22 142.8 17.8 121 16-150 5-141 (149)
68 3luf_A Two-component system re 99.8 9.8E-18 3.3E-22 165.0 16.6 119 16-150 123-248 (259)
69 3mm4_A Histidine kinase homolo 99.8 7E-18 2.4E-22 159.6 14.9 120 14-149 58-198 (206)
70 3cg4_A Response regulator rece 99.8 4.6E-18 1.6E-22 147.7 12.3 121 15-151 5-131 (142)
71 3n53_A Response regulator rece 99.8 3E-18 1E-22 149.2 10.9 118 16-150 2-125 (140)
72 1dcf_A ETR1 protein; beta-alph 99.8 2.8E-17 9.7E-22 142.4 16.9 114 16-146 6-128 (136)
73 3eul_A Possible nitrate/nitrit 99.8 1.3E-17 4.6E-22 147.4 15.0 122 12-149 10-137 (152)
74 1qkk_A DCTD, C4-dicarboxylate 99.8 2.1E-17 7.3E-22 146.6 16.3 117 17-149 3-123 (155)
75 2jba_A Phosphate regulon trans 99.8 2.5E-18 8.7E-23 146.2 9.8 114 18-147 3-122 (127)
76 3lte_A Response regulator; str 99.8 2.2E-17 7.4E-22 141.7 15.7 117 15-148 4-126 (132)
77 2ayx_A Sensor kinase protein R 99.7 1.4E-17 4.8E-22 162.9 15.8 118 16-149 128-249 (254)
78 3ilh_A Two component response 99.7 3.8E-17 1.3E-21 141.8 16.6 120 14-147 6-139 (146)
79 3a10_A Response regulator; pho 99.7 6.4E-18 2.2E-22 141.9 11.2 110 18-145 2-115 (116)
80 1s8n_A Putative antiterminator 99.7 1.2E-17 4.2E-22 155.7 14.0 117 16-148 12-132 (205)
81 4dad_A Putative pilus assembly 99.7 6.4E-18 2.2E-22 148.1 11.2 120 15-148 18-142 (146)
82 3n0r_A Response regulator; sig 99.7 2.5E-18 8.5E-23 172.9 9.7 114 17-148 160-278 (286)
83 3cu5_A Two component transcrip 99.7 1.1E-17 3.8E-22 147.2 12.4 117 17-149 2-125 (141)
84 3cz5_A Two-component response 99.7 2.7E-17 9.4E-22 145.6 14.4 117 16-148 4-126 (153)
85 2hqr_A Putative transcriptiona 99.7 1E-17 3.5E-22 157.8 11.9 147 18-184 1-172 (223)
86 3dzd_A Transcriptional regulat 99.7 1.3E-17 4.5E-22 173.7 13.3 115 19-149 2-120 (368)
87 2jk1_A HUPR, hydrogenase trans 99.7 7.8E-17 2.7E-21 140.4 16.0 115 18-148 2-120 (139)
88 3eqz_A Response regulator; str 99.7 2.1E-17 7.3E-22 141.6 11.4 115 16-147 2-125 (135)
89 2qvg_A Two component response 99.7 1.1E-16 3.7E-21 139.2 15.2 119 14-146 4-134 (143)
90 2gkg_A Response regulator homo 99.7 3.8E-17 1.3E-21 137.8 11.9 112 18-146 6-124 (127)
91 3eq2_A Probable two-component 99.7 2.8E-17 9.5E-22 169.6 13.2 117 17-149 5-126 (394)
92 2qv0_A Protein MRKE; structura 99.7 2E-16 6.9E-21 137.8 16.4 118 16-151 8-131 (143)
93 1ny5_A Transcriptional regulat 99.7 1.1E-16 3.8E-21 167.5 15.2 115 18-148 1-119 (387)
94 2qsj_A DNA-binding response re 99.7 7.2E-17 2.5E-21 142.7 11.4 118 16-148 2-125 (154)
95 2rdm_A Response regulator rece 99.7 3.3E-16 1.1E-20 134.0 15.2 116 16-148 4-124 (132)
96 1w25_A Stalked-cell differenti 99.7 1.5E-16 5.1E-21 166.5 15.8 115 18-148 2-122 (459)
97 2pln_A HP1043, response regula 99.7 3.3E-16 1.1E-20 135.8 15.2 115 14-148 15-134 (137)
98 3kyj_B CHEY6 protein, putative 99.7 1E-16 3.5E-21 140.7 11.2 112 14-141 10-129 (145)
99 3t8y_A CHEB, chemotaxis respon 99.7 3.2E-16 1.1E-20 141.8 14.4 116 14-145 22-153 (164)
100 3c97_A Signal transduction his 99.7 1.9E-16 6.4E-21 138.2 11.1 114 17-149 10-132 (140)
101 2j48_A Two-component sensor ki 99.7 2.4E-16 8.4E-21 130.3 10.6 109 18-145 2-116 (119)
102 3bre_A Probable two-component 99.7 3.8E-16 1.3E-20 157.5 13.5 114 17-146 18-138 (358)
103 1dc7_A NTRC, nitrogen regulati 99.7 4.8E-18 1.6E-22 143.2 -1.2 115 17-147 3-121 (124)
104 3sy8_A ROCR; TIM barrel phosph 99.6 3.4E-16 1.2E-20 163.0 11.5 118 17-149 3-130 (400)
105 1qo0_D AMIR; binding protein, 99.6 5.1E-16 1.8E-20 143.7 9.0 112 16-148 11-126 (196)
106 2b4a_A BH3024; flavodoxin-like 99.6 1.5E-15 5.3E-20 131.7 9.6 116 13-147 11-131 (138)
107 3luf_A Two-component system re 99.6 5.8E-15 2E-19 145.2 10.8 101 17-134 4-107 (259)
108 1a2o_A CHEB methylesterase; ba 99.6 2.1E-14 7.2E-19 148.8 15.1 115 16-146 2-132 (349)
109 2vyc_A Biodegradative arginine 99.5 7.4E-14 2.5E-18 158.1 9.2 117 18-149 1-135 (755)
110 1w25_A Stalked-cell differenti 98.8 7.7E-08 2.6E-12 100.6 17.3 114 17-148 152-271 (459)
111 3cwo_X Beta/alpha-barrel prote 98.8 2.4E-09 8.1E-14 100.6 3.9 88 42-145 6-99 (237)
112 2ayx_A Sensor kinase protein R 97.0 0.0029 9.9E-08 61.4 10.5 96 15-145 9-104 (254)
113 3n75_A LDC, lysine decarboxyla 96.5 0.003 1E-07 71.7 7.2 101 29-147 18-123 (715)
114 3q7r_A Transcriptional regulat 96.1 0.05 1.7E-06 48.1 10.9 100 18-147 13-118 (121)
115 2yxb_A Coenzyme B12-dependent 94.7 0.35 1.2E-05 44.7 12.4 118 16-149 17-147 (161)
116 3cwo_X Beta/alpha-barrel prote 93.2 0.34 1.2E-05 44.7 9.1 77 49-140 131-219 (237)
117 3q58_A N-acetylmannosamine-6-p 91.4 1.1 3.8E-05 43.7 10.6 97 17-130 101-210 (229)
118 1ccw_A Protein (glutamate muta 90.0 3.2 0.00011 37.1 11.5 104 24-143 14-132 (137)
119 3igs_A N-acetylmannosamine-6-p 89.4 2.1 7E-05 41.8 10.5 97 17-130 101-210 (232)
120 3fkq_A NTRC-like two-domain pr 88.3 1.8 6.1E-05 44.5 9.7 104 16-146 20-127 (373)
121 1r8j_A KAIA; circadian clock p 83.4 3.4 0.00012 42.0 8.5 125 14-153 6-135 (289)
122 1wv2_A Thiazole moeity, thiazo 82.5 7.2 0.00025 39.4 10.4 100 30-146 124-237 (265)
123 2i2x_B MTAC, methyltransferase 81.0 16 0.00056 35.8 12.4 82 16-99 122-215 (258)
124 2yus_A SWI/SNF-related matrix- 80.7 4.3 0.00015 33.6 6.8 46 332-382 18-63 (79)
125 2q5c_A NTRC family transcripti 80.4 19 0.00064 34.1 12.2 87 14-108 1-88 (196)
126 2hzd_A Transcriptional enhance 79.8 2.1 7.1E-05 36.2 4.6 56 331-387 5-77 (82)
127 3qja_A IGPS, indole-3-glycerol 79.2 18 0.0006 36.2 12.1 95 20-130 139-242 (272)
128 2lci_A Protein OR36; structura 78.7 4.1 0.00014 35.6 6.2 42 18-59 78-119 (134)
129 2gek_A Phosphatidylinositol ma 78.2 7.2 0.00025 38.5 8.9 106 17-146 240-348 (406)
130 2bfw_A GLGA glycogen synthase; 77.9 14 0.00047 32.9 10.0 105 17-146 70-179 (200)
131 1y80_A Predicted cobalamin bin 76.2 13 0.00043 35.0 9.6 77 17-95 88-178 (210)
132 3c48_A Predicted glycosyltrans 76.0 16 0.00056 36.5 11.0 107 17-146 276-390 (438)
133 2yum_A ZZZ3 protein, zinc fing 76.0 4.3 0.00015 32.6 5.4 51 332-384 8-61 (75)
134 1rzu_A Glycogen synthase 1; gl 75.4 20 0.00067 36.8 11.6 106 17-145 320-438 (485)
135 3qhp_A Type 1 capsular polysac 75.2 13 0.00046 32.0 8.9 105 17-146 32-139 (166)
136 3ezx_A MMCP 1, monomethylamine 75.1 4.5 0.00015 38.9 6.3 96 16-129 91-202 (215)
137 3fro_A GLGA glycogen synthase; 74.4 25 0.00084 34.8 11.7 105 17-146 285-394 (439)
138 2iw1_A Lipopolysaccharide core 74.2 13 0.00045 36.1 9.4 105 17-146 228-336 (374)
139 2xci_A KDO-transferase, 3-deox 73.7 8.4 0.00029 39.2 8.2 109 17-146 225-345 (374)
140 2f9f_A First mannosyl transfer 72.8 22 0.00076 31.5 9.9 105 17-146 50-161 (177)
141 1xi3_A Thiamine phosphate pyro 72.7 26 0.00089 32.2 10.7 73 40-129 107-189 (215)
142 2xij_A Methylmalonyl-COA mutas 72.4 22 0.00074 40.9 11.8 118 17-150 604-734 (762)
143 1yad_A Regulatory protein TENI 71.7 17 0.0006 34.1 9.4 80 31-129 102-191 (221)
144 3ffs_A Inosine-5-monophosphate 70.9 38 0.0013 35.8 12.6 96 17-129 156-274 (400)
145 2cqr_A RSGI RUH-043, DNAJ homo 70.6 14 0.00047 30.2 7.2 49 332-382 18-67 (73)
146 3rht_A (gatase1)-like protein; 70.5 1.6 5.5E-05 43.6 1.9 50 17-70 4-57 (259)
147 3tsm_A IGPS, indole-3-glycerol 69.8 41 0.0014 33.7 12.0 87 28-130 156-249 (272)
148 1xrs_B D-lysine 5,6-aminomutas 69.4 25 0.00084 35.3 10.2 113 16-146 119-257 (262)
149 2cu7_A KIAA1915 protein; nucle 69.3 12 0.00041 29.9 6.5 48 332-384 9-56 (72)
150 4fo4_A Inosine 5'-monophosphat 69.3 35 0.0012 35.6 11.8 97 17-130 120-240 (366)
151 1req_A Methylmalonyl-COA mutas 68.5 29 0.001 39.6 11.7 117 16-148 595-724 (727)
152 3dr5_A Putative O-methyltransf 68.0 16 0.00054 34.6 8.2 68 14-86 78-149 (221)
153 2qzs_A Glycogen synthase; glyc 67.7 19 0.00066 36.8 9.4 106 17-145 321-439 (485)
154 3okp_A GDP-mannose-dependent a 66.3 17 0.00058 35.5 8.3 106 17-146 229-343 (394)
155 1vgv_A UDP-N-acetylglucosamine 66.0 38 0.0013 33.2 10.8 99 18-146 239-341 (384)
156 1v4v_A UDP-N-acetylglucosamine 65.2 48 0.0017 32.4 11.4 99 18-146 231-333 (376)
157 3o63_A Probable thiamine-phosp 65.0 41 0.0014 32.9 10.7 71 42-129 136-218 (243)
158 2gjl_A Hypothetical protein PA 64.3 74 0.0025 31.8 12.8 80 34-129 111-200 (328)
159 2pyy_A Ionotropic glutamate re 63.3 23 0.00077 31.3 7.9 56 8-71 104-159 (228)
160 2d00_A V-type ATP synthase sub 63.1 28 0.00096 30.2 8.1 74 16-96 2-80 (109)
161 3h2s_A Putative NADH-flavin re 62.8 20 0.00069 32.6 7.6 70 18-96 1-70 (224)
162 3khj_A Inosine-5-monophosphate 62.7 45 0.0015 34.6 11.0 97 17-130 117-236 (361)
163 3beo_A UDP-N-acetylglucosamine 61.9 93 0.0032 30.1 12.7 99 18-146 239-341 (375)
164 2r60_A Glycosyl transferase, g 61.9 39 0.0013 34.8 10.5 106 18-146 295-423 (499)
165 2jjm_A Glycosyl transferase, g 61.2 11 0.00037 37.4 5.9 105 18-146 242-349 (394)
166 1thf_D HISF protein; thermophI 60.7 68 0.0023 30.3 11.2 76 49-139 152-239 (253)
167 3ia7_A CALG4; glycosysltransfe 60.6 25 0.00085 34.7 8.3 33 17-49 4-40 (402)
168 1xm3_A Thiazole biosynthesis p 59.2 15 0.00052 36.2 6.4 73 41-130 126-207 (264)
169 3r2g_A Inosine 5'-monophosphat 58.7 1.3E+02 0.0044 31.3 13.7 96 17-129 112-227 (361)
170 3ic5_A Putative saccharopine d 58.6 51 0.0018 26.5 8.7 73 17-97 5-78 (118)
171 1ka9_F Imidazole glycerol phos 58.3 57 0.0019 30.9 10.2 75 50-139 154-240 (252)
172 3kp1_A D-ornithine aminomutase 58.3 28 0.00095 39.6 8.9 113 17-147 602-735 (763)
173 3bw2_A 2-nitropropane dioxygen 58.3 71 0.0024 32.6 11.5 76 38-129 142-236 (369)
174 4dzz_A Plasmid partitioning pr 58.1 19 0.00065 32.3 6.5 52 16-72 29-84 (206)
175 3c3y_A Pfomt, O-methyltransfer 58.0 41 0.0014 31.8 9.1 59 14-72 92-156 (237)
176 3bo9_A Putative nitroalkan dio 57.7 57 0.002 32.9 10.6 79 35-129 118-204 (326)
177 4fyk_A Deoxyribonucleoside 5'- 57.4 12 0.0004 34.8 4.9 103 25-146 16-141 (152)
178 1x41_A Transcriptional adaptor 57.3 25 0.00085 27.0 6.1 47 332-382 8-54 (60)
179 3gjy_A Spermidine synthase; AP 57.1 42 0.0014 34.3 9.5 57 17-75 113-171 (317)
180 2oo3_A Protein involved in cat 56.7 11 0.00036 38.4 4.9 55 17-71 113-167 (283)
181 2htm_A Thiazole biosynthesis p 56.2 41 0.0014 34.0 9.0 95 34-146 117-228 (268)
182 3u3x_A Oxidoreductase; structu 55.7 19 0.00066 36.5 6.7 112 10-144 19-135 (361)
183 2x6q_A Trehalose-synthase TRET 55.4 83 0.0028 31.2 11.3 105 17-146 262-378 (416)
184 2c6q_A GMP reductase 2; TIM ba 55.3 1.7E+02 0.0058 30.0 13.8 96 17-129 132-251 (351)
185 2khz_A C-MYC-responsive protei 54.9 21 0.00072 32.8 6.2 116 12-147 6-151 (165)
186 1geq_A Tryptophan synthase alp 54.4 25 0.00086 33.4 7.0 46 80-138 69-123 (248)
187 2z6i_A Trans-2-enoyl-ACP reduc 54.2 74 0.0025 32.0 10.8 78 36-129 105-190 (332)
188 3ot5_A UDP-N-acetylglucosamine 53.1 1.1E+02 0.0036 31.5 11.9 99 18-146 258-360 (403)
189 3llv_A Exopolyphosphatase-rela 52.7 39 0.0013 28.8 7.3 52 17-71 6-57 (141)
190 1sui_A Caffeoyl-COA O-methyltr 52.6 44 0.0015 32.0 8.4 58 14-73 101-166 (247)
191 1lst_A Lysine, arginine, ornit 52.6 33 0.0011 30.7 7.2 53 16-71 110-162 (239)
192 3f4w_A Putative hexulose 6 pho 52.4 1.1E+02 0.0039 27.9 11.0 95 18-129 78-186 (211)
193 2gek_A Phosphatidylinositol ma 52.3 31 0.0011 33.9 7.4 37 11-47 14-58 (406)
194 3usb_A Inosine-5'-monophosphat 51.7 98 0.0033 33.4 11.8 98 17-130 268-388 (511)
195 2iuy_A Avigt4, glycosyltransfe 51.4 28 0.00097 33.6 6.9 57 16-74 2-95 (342)
196 3rot_A ABC sugar transporter, 51.3 59 0.002 30.9 9.0 66 29-98 21-96 (297)
197 2v25_A Major cell-binding fact 50.9 45 0.0015 30.1 7.8 59 9-71 141-201 (259)
198 3tfw_A Putative O-methyltransf 50.1 76 0.0026 30.0 9.6 80 13-96 84-170 (248)
199 1y0e_A Putative N-acetylmannos 50.0 61 0.0021 30.1 8.7 74 41-130 119-204 (223)
200 3g1w_A Sugar ABC transporter; 49.3 80 0.0027 29.8 9.6 78 16-97 3-95 (305)
201 2ekc_A AQ_1548, tryptophan syn 49.1 55 0.0019 32.1 8.6 81 53-142 36-141 (262)
202 2iuy_A Avigt4, glycosyltransfe 49.1 13 0.00045 36.0 4.1 106 17-146 188-307 (342)
203 2l82_A Designed protein OR32; 48.9 76 0.0026 28.4 8.5 118 17-147 26-151 (162)
204 3s28_A Sucrose synthase 1; gly 48.8 1.2E+02 0.0041 34.9 12.4 108 17-146 603-729 (816)
205 3tr6_A O-methyltransferase; ce 48.6 60 0.002 29.6 8.3 60 13-72 85-149 (225)
206 1qdl_B Protein (anthranilate s 48.6 7.3 0.00025 36.2 2.0 49 19-69 2-51 (195)
207 3duw_A OMT, O-methyltransferas 48.5 72 0.0025 29.1 8.9 81 13-96 79-167 (223)
208 3fwz_A Inner membrane protein 48.1 63 0.0021 27.8 8.0 14 18-31 31-44 (140)
209 2cqq_A RSGI RUH-037, DNAJ homo 48.0 22 0.00075 28.9 4.6 44 334-382 10-56 (72)
210 3l6u_A ABC-type sugar transpor 47.8 55 0.0019 30.7 8.1 65 29-97 26-98 (293)
211 2tps_A Protein (thiamin phosph 47.0 62 0.0021 30.1 8.2 67 46-129 122-199 (227)
212 4e5v_A Putative THUA-like prot 46.8 21 0.00073 35.7 5.3 75 16-94 3-92 (281)
213 2iw5_B Protein corest, REST co 46.4 25 0.00086 34.9 5.5 50 330-384 131-180 (235)
214 2avd_A Catechol-O-methyltransf 45.8 60 0.0021 29.6 7.9 60 13-72 90-154 (229)
215 2rir_A Dipicolinate synthase, 45.7 40 0.0014 33.2 7.1 89 13-108 3-117 (300)
216 1eep_A Inosine 5'-monophosphat 44.8 1E+02 0.0034 32.0 10.2 86 28-129 180-284 (404)
217 3m9w_A D-xylose-binding peripl 44.3 61 0.0021 31.0 8.0 67 27-97 18-92 (313)
218 3euw_A MYO-inositol dehydrogen 44.3 73 0.0025 31.6 8.8 106 15-144 2-112 (344)
219 1f0k_A MURG, UDP-N-acetylgluco 43.6 39 0.0013 32.8 6.5 61 64-144 255-322 (364)
220 4avf_A Inosine-5'-monophosphat 43.5 1.4E+02 0.0046 32.1 11.2 97 17-130 241-361 (490)
221 1jcn_A Inosine monophosphate d 43.3 1.4E+02 0.0049 31.8 11.4 84 29-129 283-386 (514)
222 3oti_A CALG3; calicheamicin, T 43.1 58 0.002 32.5 7.8 33 17-49 20-56 (398)
223 3cbg_A O-methyltransferase; cy 43.1 86 0.0029 29.3 8.6 60 13-72 93-157 (232)
224 3l4e_A Uncharacterized peptida 42.6 79 0.0027 30.0 8.3 43 17-59 27-79 (206)
225 2xag_B REST corepressor 1; ami 42.5 29 0.00099 37.8 5.8 50 330-384 378-427 (482)
226 1h5y_A HISF; histidine biosynt 42.0 1.2E+02 0.0042 28.0 9.5 66 49-129 155-226 (253)
227 3kke_A LACI family transcripti 41.9 53 0.0018 31.4 7.1 65 28-97 32-103 (303)
228 3bbl_A Regulatory protein of L 41.7 1.1E+02 0.0039 28.7 9.3 64 28-97 25-96 (287)
229 3d4o_A Dipicolinate synthase s 41.6 39 0.0013 33.2 6.2 88 14-108 2-115 (293)
230 3qk7_A Transcriptional regulat 41.6 60 0.0021 30.8 7.4 64 28-97 27-97 (294)
231 3egc_A Putative ribose operon 41.1 89 0.003 29.4 8.5 65 28-98 25-97 (291)
232 3dhn_A NAD-dependent epimerase 41.0 34 0.0012 31.1 5.3 73 16-96 3-75 (227)
233 3oy2_A Glycosyltransferase B73 40.9 79 0.0027 31.3 8.4 105 18-146 216-354 (413)
234 2fn9_A Ribose ABC transporter, 40.9 1E+02 0.0035 28.9 8.8 66 28-97 19-92 (290)
235 3brq_A HTH-type transcriptiona 40.9 1.5E+02 0.005 27.6 9.9 67 28-97 38-110 (296)
236 2w6r_A Imidazole glycerol phos 40.8 84 0.0029 30.0 8.3 67 49-130 157-229 (266)
237 2v82_A 2-dehydro-3-deoxy-6-pho 40.3 57 0.002 30.2 6.9 76 35-130 95-176 (212)
238 3ec7_A Putative dehydrogenase; 40.2 99 0.0034 31.1 9.1 136 16-173 22-163 (357)
239 4fzr_A SSFS6; structural genom 40.1 56 0.0019 32.5 7.2 84 6-95 4-151 (398)
240 3fwz_A Inner membrane protein 40.1 64 0.0022 27.8 6.7 73 18-99 8-82 (140)
241 4adt_A Pyridoxine biosynthetic 40.1 1.8E+02 0.0061 29.4 10.9 71 44-130 129-238 (297)
242 3bul_A Methionine synthase; tr 40.0 70 0.0024 35.5 8.5 83 17-101 98-192 (579)
243 3u81_A Catechol O-methyltransf 39.9 44 0.0015 30.8 6.0 62 14-75 80-146 (221)
244 3k4h_A Putative transcriptiona 39.5 74 0.0025 29.8 7.6 64 28-97 30-101 (292)
245 1ii5_A SLR1257 protein; membra 39.5 76 0.0026 28.0 7.3 55 9-71 109-163 (233)
246 3qz6_A HPCH/HPAI aldolase; str 39.2 2.1E+02 0.0073 28.0 11.1 95 33-143 6-109 (261)
247 2dri_A D-ribose-binding protei 39.2 1.1E+02 0.0037 28.6 8.6 64 29-96 19-90 (271)
248 1qop_A Tryptophan synthase alp 38.7 46 0.0016 32.6 6.2 74 53-141 36-140 (268)
249 2y88_A Phosphoribosyl isomeras 38.6 2.2E+02 0.0077 26.5 10.8 76 49-139 150-240 (244)
250 3k9c_A Transcriptional regulat 38.2 62 0.0021 30.7 6.9 63 29-97 29-97 (289)
251 3db2_A Putative NADPH-dependen 38.1 1.4E+02 0.0049 29.6 9.9 107 14-145 2-114 (354)
252 2elk_A SPCC24B10.08C protein; 38.0 31 0.0011 26.4 3.8 47 334-383 11-57 (58)
253 1i1q_B Anthranilate synthase c 38.0 44 0.0015 30.6 5.6 51 18-69 1-54 (192)
254 3p9n_A Possible methyltransfer 37.8 67 0.0023 28.6 6.7 53 18-72 68-122 (189)
255 3tsa_A SPNG, NDP-rhamnosyltran 37.7 63 0.0022 31.9 7.1 73 17-95 1-142 (391)
256 2l69_A Rossmann 2X3 fold prote 37.6 1.1E+02 0.0038 26.7 7.5 42 18-59 3-44 (134)
257 3sc6_A DTDP-4-dehydrorhamnose 37.5 56 0.0019 30.8 6.4 54 18-73 6-66 (287)
258 3jy6_A Transcriptional regulat 37.2 1.3E+02 0.0045 28.0 8.9 63 28-97 24-94 (276)
259 1qo2_A Molecule: N-((5-phospho 37.1 77 0.0026 30.0 7.3 74 49-139 145-238 (241)
260 2yln_A Putative ABC transporte 37.0 64 0.0022 30.5 6.8 56 8-71 156-211 (283)
261 2nvw_A Galactose/lactose metab 36.9 83 0.0028 33.5 8.2 121 1-143 21-160 (479)
262 3tb6_A Arabinose metabolism tr 36.8 1.3E+02 0.0045 28.0 8.9 68 28-97 32-108 (298)
263 2i7c_A Spermidine synthase; tr 36.7 1.1E+02 0.0037 29.9 8.5 57 16-75 101-163 (283)
264 1vzw_A Phosphoribosyl isomeras 36.6 1.3E+02 0.0044 28.3 8.8 76 49-139 147-237 (244)
265 4dim_A Phosphoribosylglycinami 36.5 1.7E+02 0.0059 29.3 10.2 33 14-47 4-36 (403)
266 2w6r_A Imidazole glycerol phos 36.5 77 0.0026 30.3 7.3 70 48-132 30-105 (266)
267 3l49_A ABC sugar (ribose) tran 36.5 50 0.0017 30.9 5.9 65 29-97 23-95 (291)
268 1dbq_A Purine repressor; trans 36.4 90 0.0031 29.2 7.6 66 29-97 25-96 (289)
269 3e3m_A Transcriptional regulat 36.1 95 0.0032 30.5 8.1 63 28-96 87-157 (355)
270 3m2t_A Probable dehydrogenase; 36.1 1.2E+02 0.004 30.6 8.9 109 15-146 3-117 (359)
271 1ypf_A GMP reductase; GUAC, pu 36.0 3.5E+02 0.012 27.2 13.0 95 18-129 121-238 (336)
272 3k5i_A Phosphoribosyl-aminoimi 36.0 2.7E+02 0.0093 28.4 11.8 35 13-48 20-54 (403)
273 3kux_A Putative oxidoreductase 36.0 1.6E+02 0.0054 29.4 9.8 105 14-144 4-114 (352)
274 1geq_A Tryptophan synthase alp 35.8 1.2E+02 0.004 28.7 8.4 81 32-130 124-220 (248)
275 3hcw_A Maltose operon transcri 35.7 1.1E+02 0.0036 29.1 8.1 64 28-97 29-100 (295)
276 2h3h_A Sugar ABC transporter, 35.6 1.9E+02 0.0063 27.6 9.9 66 28-97 17-91 (313)
277 3l0g_A Nicotinate-nucleotide p 35.4 35 0.0012 35.0 4.7 84 20-108 181-270 (300)
278 3huu_A Transcription regulator 35.4 1.4E+02 0.0049 28.2 9.0 64 28-97 44-115 (305)
279 3c3k_A Alanine racemase; struc 35.2 1.5E+02 0.0052 27.8 9.1 65 28-97 25-95 (285)
280 4avf_A Inosine-5'-monophosphat 34.9 47 0.0016 35.7 6.0 65 49-129 229-297 (490)
281 2ift_A Putative methylase HI07 34.8 66 0.0023 29.4 6.3 66 18-86 77-147 (201)
282 2fhp_A Methylase, putative; al 34.8 1.8E+02 0.0063 25.1 9.0 68 18-86 68-138 (187)
283 3cvo_A Methyltransferase-like 34.6 63 0.0022 30.9 6.2 78 17-96 51-154 (202)
284 1p9l_A Dihydrodipicolinate red 34.6 1E+02 0.0036 30.1 7.9 74 18-96 1-77 (245)
285 1ity_A TRF1; helix-turn-helix, 34.4 96 0.0033 24.2 6.3 57 328-389 6-62 (69)
286 2ioy_A Periplasmic sugar-bindi 34.1 1E+02 0.0034 29.0 7.6 64 29-96 19-90 (283)
287 2hnk_A SAM-dependent O-methylt 34.1 1.7E+02 0.0058 27.1 9.1 61 14-74 82-158 (239)
288 2gn4_A FLAA1 protein, UDP-GLCN 34.1 1E+02 0.0035 30.6 8.0 84 6-96 10-99 (344)
289 3kjx_A Transcriptional regulat 33.9 1E+02 0.0035 30.0 7.8 63 27-95 84-154 (344)
290 3orh_A Guanidinoacetate N-meth 33.9 74 0.0025 29.9 6.6 55 18-74 84-139 (236)
291 3ew7_A LMO0794 protein; Q8Y8U8 33.9 70 0.0024 28.6 6.2 69 18-96 1-69 (221)
292 1vrd_A Inosine-5'-monophosphat 33.7 2.4E+02 0.0083 29.7 11.2 85 28-129 264-368 (494)
293 3ius_A Uncharacterized conserv 33.4 32 0.0011 32.6 3.9 53 17-72 5-57 (286)
294 3pfn_A NAD kinase; structural 33.3 77 0.0026 33.2 7.1 105 10-148 33-165 (365)
295 3e8x_A Putative NAD-dependent 33.3 42 0.0014 31.0 4.6 55 16-72 20-75 (236)
296 3dzc_A UDP-N-acetylglucosamine 33.1 1.7E+02 0.0057 29.8 9.6 41 88-146 326-366 (396)
297 1ujp_A Tryptophan synthase alp 33.1 52 0.0018 32.7 5.5 82 51-142 33-138 (271)
298 3uuw_A Putative oxidoreductase 33.1 93 0.0032 30.3 7.4 107 14-146 3-115 (308)
299 4fxs_A Inosine-5'-monophosphat 33.1 2.5E+02 0.0087 30.1 11.3 97 17-130 243-363 (496)
300 2l2q_A PTS system, cellobiose- 33.0 53 0.0018 27.9 4.9 75 15-96 2-84 (109)
301 3s83_A Ggdef family protein; s 33.0 52 0.0018 31.3 5.4 97 30-142 141-253 (259)
302 3ju3_A Probable 2-oxoacid ferr 32.9 96 0.0033 26.7 6.6 88 49-146 27-117 (118)
303 1wdn_A GLNBP, glutamine bindin 32.9 1.2E+02 0.0041 26.4 7.5 58 8-71 101-158 (226)
304 3qvo_A NMRA family protein; st 32.9 46 0.0016 30.9 4.9 72 17-95 23-95 (236)
305 2fep_A Catabolite control prot 32.8 1.5E+02 0.005 28.0 8.5 64 28-97 33-104 (289)
306 1wl8_A GMP synthase [glutamine 32.5 34 0.0012 31.2 3.8 72 20-95 3-79 (189)
307 3e18_A Oxidoreductase; dehydro 32.4 2.2E+02 0.0075 28.6 10.2 105 15-145 3-113 (359)
308 3gbv_A Putative LACI-family tr 32.1 1.8E+02 0.0061 27.1 9.0 66 28-97 26-103 (304)
309 3llv_A Exopolyphosphatase-rela 32.0 2.3E+02 0.0078 23.8 9.4 74 17-99 29-107 (141)
310 3ntv_A MW1564 protein; rossman 31.9 1.5E+02 0.0053 27.4 8.4 64 17-86 95-162 (232)
311 3tqv_A Nicotinate-nucleotide p 31.9 56 0.0019 33.2 5.6 84 20-108 172-261 (287)
312 3uug_A Multiple sugar-binding 31.9 94 0.0032 29.7 7.1 66 28-97 20-93 (330)
313 2fvy_A D-galactose-binding per 31.8 1.1E+02 0.0038 28.8 7.5 66 28-98 19-94 (309)
314 3i6v_A Periplasmic His/Glu/Gln 31.8 91 0.0031 28.2 6.6 52 11-71 102-153 (232)
315 8abp_A L-arabinose-binding pro 31.6 98 0.0034 29.1 7.1 64 29-96 20-90 (306)
316 3m2p_A UDP-N-acetylglucosamine 31.6 1.9E+02 0.0067 27.5 9.3 32 17-48 2-33 (311)
317 2fpo_A Methylase YHHF; structu 31.3 1.3E+02 0.0045 27.3 7.7 52 18-72 78-131 (202)
318 3c3p_A Methyltransferase; NP_9 31.2 1.9E+02 0.0067 26.0 8.8 68 13-87 77-147 (210)
319 3brs_A Periplasmic binding pro 31.0 1.1E+02 0.0038 28.5 7.3 64 29-96 25-98 (289)
320 4htf_A S-adenosylmethionine-de 31.0 57 0.002 31.1 5.3 68 17-87 90-160 (285)
321 2rgy_A Transcriptional regulat 30.9 81 0.0028 29.8 6.3 64 28-97 25-99 (290)
322 3iwt_A 178AA long hypothetical 30.8 1E+02 0.0036 28.0 6.8 62 12-74 10-92 (178)
323 2y7i_A STM4351; arginine-bindi 30.5 1E+02 0.0036 27.1 6.7 57 9-71 105-161 (229)
324 3ksm_A ABC-type sugar transpor 30.5 1.1E+02 0.0038 28.1 7.1 66 28-97 17-93 (276)
325 1rd5_A Tryptophan synthase alp 30.2 60 0.002 31.4 5.3 39 79-130 189-230 (262)
326 2qfm_A Spermine synthase; sper 30.2 84 0.0029 32.9 6.7 56 18-73 212-277 (364)
327 3q2i_A Dehydrogenase; rossmann 30.1 2.1E+02 0.0071 28.5 9.5 106 16-145 12-123 (354)
328 3o74_A Fructose transport syst 30.1 1E+02 0.0035 28.4 6.8 64 29-97 20-91 (272)
329 2x4g_A Nucleoside-diphosphate- 30.0 75 0.0026 30.7 6.0 75 15-96 11-85 (342)
330 3r6d_A NAD-dependent epimerase 30.0 1.4E+02 0.0047 27.1 7.6 73 19-96 7-81 (221)
331 3del_B Arginine binding protei 30.0 96 0.0033 27.8 6.4 54 11-71 113-166 (242)
332 3clk_A Transcription regulator 30.0 1.3E+02 0.0045 28.2 7.7 63 28-96 25-96 (290)
333 2iks_A DNA-binding transcripti 30.0 3.5E+02 0.012 25.3 11.5 65 28-97 37-109 (293)
334 1ka9_F Imidazole glycerol phos 29.9 1.5E+02 0.005 28.0 7.9 66 48-129 31-103 (252)
335 3rc1_A Sugar 3-ketoreductase; 29.8 1.2E+02 0.0042 30.3 7.8 104 16-144 26-136 (350)
336 3szt_A QCSR, quorum-sensing co 29.7 47 0.0016 31.7 4.4 37 156-192 172-208 (237)
337 1qpz_A PURA, protein (purine n 29.6 1.1E+02 0.0037 29.8 7.2 66 29-97 76-147 (340)
338 3cni_A Putative ABC type-2 tra 29.6 65 0.0022 28.5 5.1 56 14-75 7-64 (156)
339 2pju_A Propionate catabolism o 29.5 2.7E+02 0.0091 26.9 9.8 75 15-95 10-89 (225)
340 3ulq_B Transcriptional regulat 29.3 22 0.00075 29.4 1.7 37 156-192 26-62 (90)
341 3mz0_A Inositol 2-dehydrogenas 29.3 2.7E+02 0.0093 27.5 10.2 135 17-173 2-142 (344)
342 3h5l_A Putative branched-chain 29.1 1.3E+02 0.0043 30.1 7.7 66 18-87 165-241 (419)
343 3e48_A Putative nucleoside-dip 29.0 89 0.003 29.6 6.2 72 18-96 1-73 (289)
344 1qpo_A Quinolinate acid phosph 29.0 1.4E+02 0.0048 30.0 7.9 91 20-128 168-267 (284)
345 1ep3_A Dihydroorotate dehydrog 29.0 2.2E+02 0.0075 27.6 9.3 85 30-129 153-269 (311)
346 3ajd_A Putative methyltransfer 28.9 2.3E+02 0.0078 27.2 9.3 61 15-75 106-168 (274)
347 3l9w_A Glutathione-regulated p 28.8 82 0.0028 33.0 6.4 90 17-129 27-121 (413)
348 1zx0_A Guanidinoacetate N-meth 28.6 1E+02 0.0035 28.5 6.5 51 19-71 85-136 (236)
349 4amg_A Snogd; transferase, pol 28.4 1E+02 0.0035 30.3 6.8 37 13-49 18-58 (400)
350 3d8u_A PURR transcriptional re 28.4 1.5E+02 0.0053 27.2 7.7 63 28-96 20-90 (275)
351 3k4u_A Binding component of AB 28.2 1.9E+02 0.0064 26.0 8.1 58 9-71 106-164 (245)
352 1yxy_A Putative N-acetylmannos 28.1 2.5E+02 0.0084 26.2 9.2 83 31-130 122-215 (234)
353 2yvq_A Carbamoyl-phosphate syn 28.0 1.3E+02 0.0043 26.9 6.7 35 13-48 21-57 (143)
354 1p4w_A RCSB; solution structur 27.9 49 0.0017 27.9 3.7 35 157-191 32-66 (99)
355 2l69_A Rossmann 2X3 fold prote 27.9 1.2E+02 0.0039 26.5 6.0 38 18-55 78-115 (134)
356 1mjf_A Spermidine synthase; sp 27.7 1.5E+02 0.0051 28.8 7.8 53 17-74 98-163 (281)
357 1zh8_A Oxidoreductase; TM0312, 27.6 2.3E+02 0.0077 28.2 9.2 106 15-144 16-129 (340)
358 2cjj_A Radialis; plant develop 27.5 85 0.0029 26.7 5.1 48 334-383 10-58 (93)
359 1z0s_A Probable inorganic poly 27.4 24 0.00082 35.6 2.0 89 18-146 30-122 (278)
360 3gv0_A Transcriptional regulat 27.4 1.7E+02 0.0059 27.4 8.0 64 28-97 27-98 (288)
361 3tql_A Arginine-binding protei 27.4 1.2E+02 0.0042 26.4 6.5 56 11-71 104-159 (227)
362 1gud_A ALBP, D-allose-binding 27.2 1.7E+02 0.0058 27.5 7.9 66 29-98 19-94 (288)
363 2qh8_A Uncharacterized protein 27.0 1.3E+02 0.0045 28.7 7.2 62 28-96 24-98 (302)
364 3h5o_A Transcriptional regulat 26.9 3.1E+02 0.011 26.4 10.0 64 27-96 78-149 (339)
365 2o6l_A UDP-glucuronosyltransfe 26.8 3.1E+02 0.01 23.6 9.3 65 63-146 86-153 (170)
366 3moi_A Probable dehydrogenase; 26.7 1.8E+02 0.006 29.6 8.4 105 17-145 2-112 (387)
367 3fro_A GLGA glycogen synthase; 26.6 1.4E+02 0.0046 29.4 7.3 33 16-48 1-42 (439)
368 3r75_A Anthranilate/para-amino 26.6 89 0.003 35.0 6.5 73 16-95 445-528 (645)
369 3abi_A Putative uncharacterize 26.5 1.4E+02 0.0047 30.2 7.5 83 16-108 15-99 (365)
370 3vnd_A TSA, tryptophan synthas 26.5 85 0.0029 31.2 5.8 78 51-144 35-144 (267)
371 1guu_A C-MYB, MYB proto-oncoge 26.4 1.3E+02 0.0043 22.0 5.4 46 332-381 3-48 (52)
372 4f3p_A Glutamine-binding perip 26.4 1.5E+02 0.005 26.9 7.0 57 9-71 123-179 (249)
373 1h5y_A HISF; histidine biosynt 26.2 2.5E+02 0.0086 25.8 8.8 68 47-129 32-105 (253)
374 4a29_A Engineered retro-aldol 26.2 3.3E+02 0.011 27.2 10.0 87 28-130 140-233 (258)
375 2esr_A Methyltransferase; stru 26.2 1.4E+02 0.0048 25.9 6.6 51 18-71 55-108 (177)
376 2vsy_A XCC0866; transferase, g 26.1 2.2E+02 0.0074 29.7 9.1 109 17-146 406-521 (568)
377 2vha_A Periplasmic binding tra 26.1 2E+02 0.0068 26.7 8.1 58 10-71 124-183 (287)
378 4hkt_A Inositol 2-dehydrogenas 26.0 2.1E+02 0.0073 28.0 8.7 103 17-144 3-110 (331)
379 3h7m_A Sensor protein; histidi 26.0 1.2E+02 0.004 26.8 6.1 56 8-71 109-166 (234)
380 3lcv_B Sisomicin-gentamicin re 25.9 31 0.0011 35.1 2.5 89 3-98 141-237 (281)
381 3axs_A Probable N(2),N(2)-dime 25.8 1.1E+02 0.0036 32.1 6.6 72 18-96 78-158 (392)
382 2ydy_A Methionine adenosyltran 25.7 1.4E+02 0.0049 28.4 7.2 32 17-48 2-33 (315)
383 1uir_A Polyamine aminopropyltr 25.6 2E+02 0.007 28.4 8.4 56 16-74 100-162 (314)
384 3tdn_A FLR symmetric alpha-bet 25.4 1.8E+02 0.0063 27.5 7.8 66 49-129 36-107 (247)
385 2xvy_A Chelatase, putative; me 25.4 37 0.0013 32.9 2.8 43 520-562 25-82 (269)
386 1f0k_A MURG, UDP-N-acetylgluco 25.2 2.4E+02 0.0083 27.1 8.7 31 18-48 7-41 (364)
387 2f6u_A GGGPS, (S)-3-O-geranylg 25.2 59 0.002 31.9 4.3 61 51-132 23-86 (234)
388 2h0a_A TTHA0807, transcription 25.2 1.3E+02 0.0043 27.9 6.4 63 29-97 17-87 (276)
389 3dbi_A Sugar-binding transcrip 25.2 2.3E+02 0.0079 27.3 8.6 66 27-97 79-152 (338)
390 3c0k_A UPF0064 protein YCCW; P 25.2 1.7E+02 0.0057 29.9 7.9 54 18-71 244-301 (396)
391 1vli_A Spore coat polysacchari 25.1 1.3E+02 0.0044 31.8 7.1 76 28-108 101-178 (385)
392 1viz_A PCRB protein homolog; s 25.1 62 0.0021 31.8 4.4 63 51-134 23-88 (240)
393 3ce9_A Glycerol dehydrogenase; 25.0 1.2E+02 0.0042 30.5 6.8 72 18-95 35-119 (354)
394 2fqx_A Membrane lipoprotein TM 25.0 1.7E+02 0.0058 28.6 7.7 65 29-97 25-95 (318)
395 3l9w_A Glutathione-regulated p 25.0 1.2E+02 0.004 31.8 6.8 74 17-99 4-79 (413)
396 1hdo_A Biliverdin IX beta redu 24.9 97 0.0033 27.3 5.4 72 18-96 4-75 (206)
397 2o20_A Catabolite control prot 24.9 2.3E+02 0.008 27.2 8.6 64 28-97 80-151 (332)
398 3c6k_A Spermine synthase; sper 24.9 1.3E+02 0.0043 31.8 6.9 57 18-74 229-295 (381)
399 3lft_A Uncharacterized protein 24.8 1.9E+02 0.0065 27.4 7.8 62 28-96 18-91 (295)
400 2gpy_A O-methyltransferase; st 24.8 2E+02 0.0069 26.3 7.8 65 17-86 78-146 (233)
401 1xj5_A Spermidine synthase 1; 24.8 1.7E+02 0.0059 29.6 7.8 57 16-74 143-205 (334)
402 2f62_A Nucleoside 2-deoxyribos 24.8 1.2E+02 0.004 28.0 6.0 71 24-98 22-108 (161)
403 1qop_A Tryptophan synthase alp 24.8 1.9E+02 0.0064 28.2 7.8 39 80-131 194-235 (268)
404 2o07_A Spermidine synthase; st 24.8 1.5E+02 0.005 29.5 7.2 55 17-74 119-179 (304)
405 3dqp_A Oxidoreductase YLBE; al 24.7 2.6E+02 0.0087 25.2 8.4 31 18-48 1-31 (219)
406 1me8_A Inosine-5'-monophosphat 24.6 6.5E+02 0.022 26.7 12.7 97 17-130 254-381 (503)
407 3gyb_A Transcriptional regulat 24.4 77 0.0026 29.6 4.8 64 27-98 21-89 (280)
408 3bt7_A TRNA (uracil-5-)-methyl 24.4 3.7E+02 0.013 27.0 10.3 77 18-96 236-326 (369)
409 3sr7_A Isopentenyl-diphosphate 24.3 1.6E+02 0.0053 30.7 7.5 85 29-130 194-307 (365)
410 1jx6_A LUXP protein; protein-l 24.2 2.5E+02 0.0086 27.0 8.6 64 28-96 61-136 (342)
411 3plv_C 66 kDa U4/U6.U5 small n 24.2 26 0.00088 22.5 0.9 7 540-546 14-20 (21)
412 2vk2_A YTFQ, ABC transporter p 24.1 1.6E+02 0.0055 27.9 7.1 65 29-97 20-92 (306)
413 2d9a_A B-MYB, MYB-related prot 23.9 1.7E+02 0.0057 22.1 5.8 47 331-381 7-53 (60)
414 4dz1_A DALS D-alanine transpor 23.9 70 0.0024 29.5 4.4 58 10-71 131-192 (259)
415 1kjq_A GART 2, phosphoribosylg 23.8 1.8E+02 0.006 29.1 7.7 34 15-49 9-42 (391)
416 3snr_A Extracellular ligand-bi 23.7 1.4E+02 0.0047 28.6 6.6 80 18-102 136-230 (362)
417 3ip3_A Oxidoreductase, putativ 23.7 97 0.0033 30.7 5.6 34 100-146 81-116 (337)
418 2qu7_A Putative transcriptiona 23.6 1.3E+02 0.0043 28.2 6.2 64 28-97 24-93 (288)
419 3m6w_A RRNA methylase; rRNA me 23.6 1.2E+02 0.0041 32.5 6.6 59 14-75 123-182 (464)
420 3l4b_C TRKA K+ channel protien 23.6 1.7E+02 0.0057 26.9 6.9 38 19-57 2-39 (218)
421 2dwc_A PH0318, 433AA long hypo 23.5 1.6E+02 0.0056 30.0 7.5 34 15-49 17-50 (433)
422 4ew6_A D-galactose-1-dehydroge 23.5 1.8E+02 0.0063 28.8 7.7 130 14-173 22-156 (330)
423 4gud_A Imidazole glycerol phos 23.4 72 0.0025 29.4 4.3 43 19-69 4-46 (211)
424 1wxx_A TT1595, hypothetical pr 23.4 2.3E+02 0.008 28.7 8.5 54 18-71 232-287 (382)
425 1wd5_A Hypothetical protein TT 23.4 1.6E+02 0.0054 27.4 6.7 54 15-71 118-177 (208)
426 3s5p_A Ribose 5-phosphate isom 23.3 2.1E+02 0.0073 26.9 7.4 39 9-47 13-53 (166)
427 2ho3_A Oxidoreductase, GFO/IDH 23.3 4.4E+02 0.015 25.6 10.3 103 17-143 1-108 (325)
428 3cea_A MYO-inositol 2-dehydrog 23.3 2.5E+02 0.0086 27.5 8.6 105 15-142 6-116 (346)
429 3hv1_A Polar amino acid ABC up 23.2 1.4E+02 0.0049 27.3 6.4 58 10-71 121-183 (268)
430 2hmt_A YUAA protein; RCK, KTN, 23.2 3.1E+02 0.011 22.4 8.7 74 17-99 6-81 (144)
431 1iy9_A Spermidine synthase; ro 23.1 1.6E+02 0.0054 28.7 6.9 55 17-74 99-159 (275)
432 1j9j_A Stationary phase surviV 23.0 2.5E+02 0.0084 27.7 8.3 34 62-96 85-128 (247)
433 2hsg_A Glucose-resistance amyl 22.9 1.7E+02 0.0057 28.3 7.0 64 28-97 77-148 (332)
434 3r3h_A O-methyltransferase, SA 22.9 56 0.0019 31.1 3.6 60 13-72 81-145 (242)
435 1ws6_A Methyltransferase; stru 22.9 1.7E+02 0.0059 24.8 6.4 54 18-71 64-118 (171)
436 3czc_A RMPB; alpha/beta sandwi 22.9 3.4E+02 0.012 22.8 9.2 81 17-107 18-105 (110)
437 1rd5_A Tryptophan synthase alp 22.9 59 0.002 31.4 3.7 70 54-139 38-134 (262)
438 2yjp_A Putative ABC transporte 22.8 1.9E+02 0.0064 27.3 7.3 58 8-71 156-213 (291)
439 2v5j_A 2,4-dihydroxyhept-2-ENE 22.7 5.7E+02 0.019 25.3 11.9 94 33-142 30-131 (287)
440 1xq6_A Unknown protein; struct 22.7 3.3E+02 0.011 24.5 8.8 73 16-96 3-77 (253)
441 3g8r_A Probable spore coat pol 22.6 2.3E+02 0.008 29.4 8.4 76 28-108 78-155 (350)
442 3hp4_A GDSL-esterase; psychrot 22.5 1E+02 0.0035 26.7 5.0 57 17-73 2-76 (185)
443 1iow_A DD-ligase, DDLB, D-ALA\ 22.4 57 0.002 31.2 3.5 53 18-72 3-63 (306)
444 1x1o_A Nicotinate-nucleotide p 22.3 2.8E+02 0.0095 27.9 8.7 91 20-129 169-267 (286)
445 3paj_A Nicotinate-nucleotide p 22.3 4.2E+02 0.015 27.2 10.1 85 19-108 204-294 (320)
446 1pii_A N-(5'phosphoribosyl)ant 22.2 4.5E+02 0.015 28.1 10.7 85 29-130 145-236 (452)
447 3q0i_A Methionyl-tRNA formyltr 22.2 1.4E+02 0.0048 30.4 6.5 78 14-99 4-96 (318)
448 3lyh_A Cobalamin (vitamin B12) 22.2 64 0.0022 27.7 3.4 41 521-562 25-65 (126)
449 1orr_A CDP-tyvelose-2-epimeras 22.1 3.5E+02 0.012 25.8 9.2 54 18-72 2-60 (347)
450 3sho_A Transcriptional regulat 22.1 3.4E+02 0.012 23.9 8.6 81 19-101 41-127 (187)
451 3td9_A Branched chain amino ac 22.1 2.6E+02 0.0089 27.0 8.3 77 18-99 150-241 (366)
452 2b78_A Hypothetical protein SM 22.0 1.6E+02 0.0054 30.2 7.0 54 18-71 236-293 (385)
453 4eyg_A Twin-arginine transloca 21.9 3.5E+02 0.012 26.0 9.2 65 18-87 140-215 (368)
454 1thf_D HISF protein; thermophI 21.9 3.3E+02 0.011 25.5 8.8 66 48-129 30-102 (253)
455 1l5x_A SurviVal protein E; str 21.9 3E+02 0.01 27.6 8.8 41 53-97 77-128 (280)
456 4had_A Probable oxidoreductase 21.8 2.8E+02 0.0094 27.3 8.5 108 14-144 20-133 (350)
457 2nv0_A Glutamine amidotransfer 21.8 69 0.0024 29.2 3.8 44 17-69 1-44 (196)
458 1j8m_F SRP54, signal recogniti 21.8 84 0.0029 31.3 4.7 54 16-71 125-188 (297)
459 3mpk_A Virulence sensor protei 21.7 1.5E+02 0.0052 27.4 6.3 56 10-71 133-188 (267)
460 2eqr_A N-COR1, N-COR, nuclear 21.7 82 0.0028 24.3 3.6 50 329-386 9-58 (61)
461 1tqj_A Ribulose-phosphate 3-ep 21.7 1.1E+02 0.0037 29.3 5.4 80 47-142 16-106 (230)
462 2pt6_A Spermidine synthase; tr 21.6 2.4E+02 0.0081 28.2 8.0 56 16-74 139-200 (321)
463 3w01_A Heptaprenylglyceryl pho 21.6 59 0.002 32.1 3.5 57 53-130 28-87 (235)
464 2nli_A Lactate oxidase; flavoe 21.4 3.7E+02 0.013 27.6 9.6 85 30-130 218-313 (368)
465 2xxa_A Signal recognition part 21.4 65 0.0022 34.1 4.0 53 17-71 129-191 (433)
466 3iwp_A Copper homeostasis prot 21.4 1.1E+02 0.0037 31.2 5.4 101 41-142 39-149 (287)
467 4eq9_A ABC transporter substra 21.4 2.2E+02 0.0074 25.3 7.0 58 10-71 109-170 (246)
468 2as0_A Hypothetical protein PH 21.4 2.2E+02 0.0075 28.9 7.9 54 18-71 241-297 (396)
469 2ffh_A Protein (FFH); SRP54, s 21.4 1.4E+02 0.0049 31.5 6.6 54 16-71 125-188 (425)
470 2b2c_A Spermidine synthase; be 21.2 1.5E+02 0.0052 29.6 6.5 56 16-74 131-192 (314)
471 3hut_A Putative branched-chain 21.2 2E+02 0.007 27.6 7.3 79 18-101 140-233 (358)
472 2q0o_A Probable transcriptiona 21.2 98 0.0033 29.1 4.8 36 157-192 173-208 (236)
473 1tjy_A Sugar transport protein 21.0 1.9E+02 0.0065 27.8 7.0 64 29-96 21-93 (316)
474 3sjm_A Telomeric repeat-bindin 21.0 2E+02 0.0069 22.4 5.8 50 332-386 11-60 (64)
475 3f9i_A 3-oxoacyl-[acyl-carrier 21.0 2.1E+02 0.0071 26.4 7.1 80 15-96 12-92 (249)
476 3ajx_A 3-hexulose-6-phosphate 21.0 3.2E+02 0.011 24.8 8.3 84 29-129 91-185 (207)
477 3hm2_A Precorrin-6Y C5,15-meth 20.8 1.9E+02 0.0065 24.8 6.3 75 17-95 49-126 (178)
478 3bwc_A Spermidine synthase; SA 20.7 2.2E+02 0.0076 27.9 7.6 58 16-75 118-181 (304)
479 1zco_A 2-dehydro-3-deoxyphosph 20.7 2.9E+02 0.0099 27.2 8.3 66 49-129 142-226 (262)
480 1h1y_A D-ribulose-5-phosphate 20.6 1.8E+02 0.0061 27.4 6.6 81 33-130 105-201 (228)
481 3iv3_A Tagatose 1,6-diphosphat 20.6 1.5E+02 0.0052 30.6 6.4 83 50-150 190-293 (332)
482 2igt_A SAM dependent methyltra 20.5 2E+02 0.0069 28.9 7.3 55 17-71 175-233 (332)
483 1wgx_A KIAA1903 protein; MYB D 20.4 1.3E+02 0.0043 24.7 4.6 46 334-381 10-56 (73)
484 4egb_A DTDP-glucose 4,6-dehydr 20.4 2.5E+02 0.0086 27.1 7.8 33 15-47 22-56 (346)
485 3m4x_A NOL1/NOP2/SUN family pr 20.2 1.8E+02 0.0061 31.0 7.1 58 15-75 128-187 (456)
486 3zzm_A Bifunctional purine bio 20.1 3.5E+02 0.012 29.8 9.3 35 12-46 5-39 (523)
487 2c5a_A GDP-mannose-3', 5'-epim 20.1 2.1E+02 0.007 28.5 7.2 74 16-96 28-101 (379)
488 4fe7_A Xylose operon regulator 20.1 83 0.0029 31.9 4.3 61 29-97 42-106 (412)
489 3ezy_A Dehydrogenase; structur 20.0 4.8E+02 0.016 25.6 9.9 106 17-145 2-112 (344)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=7.7e-29 Score=200.82 Aligned_cols=62 Identities=55% Similarity=0.923 Sum_probs=59.7
Q ss_pred cCCCCceecCHHHHHHHHHHHHHhCCCCCCCHHHHhhhCCCCCCHHHHHHhhhhhhhhhccc
Q 008254 327 NRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI 388 (572)
Q Consensus 327 ~~kk~r~~Wt~eLh~~Fv~av~~lG~~~a~Pk~il~lM~v~glt~~~v~SHLQkyr~~~~~~ 388 (572)
+.+|+|++||+|||++||+||++||.|+|+||+||++|||+|||++||||||||||++++++
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 46799999999999999999999999999999999999999999999999999999999875
No 2
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.91 E-value=7.7e-24 Score=192.57 Aligned_cols=118 Identities=14% Similarity=0.295 Sum_probs=110.6
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-----
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----- 87 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~-V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----- 87 (572)
|.+.+|||||||++..+..|+.+|+..||. |.++.++.+|++.+++ ..||+||+|+.||+ |||+++++++|
T Consensus 9 m~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~--~~~DlillD~~MP~-mdG~el~~~ir~~~~~ 85 (134)
T 3to5_A 9 LNKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKK--GDFDFVVTDWNMPG-MQGIDLLKNIRADEEL 85 (134)
T ss_dssp CCTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH--HCCSEEEEESCCSS-SCHHHHHHHHHHSTTT
T ss_pred hCCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCC-CCHHHHHHHHHhCCCC
Confidence 457789999999999999999999999996 6689999999999999 78999999999999 99999999996
Q ss_pred -CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 88 -DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 88 -dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
++|||++|++.+.+...+|++ .||++||.||++.++|..+++++++|
T Consensus 86 ~~ipvI~lTa~~~~~~~~~~~~-------------~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 86 KHLPVLMITAEAKREQIIEAAQ-------------AGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp TTCCEEEEESSCCHHHHHHHHH-------------TTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CCCeEEEEECCCCHHHHHHHHH-------------CCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 699999999999999999999 99999999999999999999888764
No 3
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.85 E-value=5e-21 Score=178.22 Aligned_cols=160 Identities=18% Similarity=0.226 Sum_probs=136.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCc
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlP 90 (572)
....+||||||++..+..|+.+|+..||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ ++|
T Consensus 2 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~-~~g~~~~~~l~~~~~~~~ 78 (208)
T 1yio_A 2 TAKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRP--EQHGCLVLDMRMPG-MSGIELQEQLTAISDGIP 78 (208)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCT--TSCEEEEEESCCSS-SCHHHHHHHHHHTTCCCC
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhc--cCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCC
Confidence 345799999999999999999999999999999999999999988 78999999999999 99999999996 699
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCC--------CcccCCCCh
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG--------SALSDSLKP 162 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~--------~~~~~sLt~ 162 (572)
||++|+..+...+.+++. .||++||.||++.++|..+++.++++...... ......||+
T Consensus 79 ii~ls~~~~~~~~~~a~~-------------~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 145 (208)
T 1yio_A 79 IVFITAHGDIPMTVRAMK-------------AGAIEFLPKPFEEQALLDAIEQGLQLNAERRQARETQDQLEQLFSSLTG 145 (208)
T ss_dssp EEEEESCTTSCCCHHHHH-------------TTEEEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH
T ss_pred EEEEeCCCCHHHHHHHHH-------------CCCcEEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCH
Confidence 999999999888889998 99999999999999999999998875422110 011346999
Q ss_pred hHHHHHHHHHhcchhhhhhccccccccc
Q 008254 163 VKESVVSMLHLKLENGESKNEKSENTEY 190 (572)
Q Consensus 163 RE~eVL~ll~~~len~e~~~e~s~~~e~ 190 (572)
+|.+++.++..+..+++.......+..+
T Consensus 146 rE~~vl~~l~~g~s~~~Ia~~l~is~~T 173 (208)
T 1yio_A 146 REQQVLQLTIRGLMNKQIAGELGIAEVT 173 (208)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHcCCCHHH
Confidence 9999999999998888776654444333
No 4
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.84 E-value=3.5e-20 Score=179.04 Aligned_cols=144 Identities=19% Similarity=0.293 Sum_probs=127.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCc
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlP 90 (572)
+.+++||||||++..+..|+.+|+..||+|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|
T Consensus 21 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvllD~~lp~-~~g~~~~~~lr~~~~~~~ 97 (250)
T 3r0j_A 21 TPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE--TRPDAVILDVXMPG-MDGFGVLRRLRADGIDAP 97 (250)
T ss_dssp CSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCSS-SCHHHHHHHHHHTTCCCC
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCC
Confidence 356899999999999999999999999999999999999999998 78999999999999 99999999996 699
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCC---Cc------------
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG---SA------------ 155 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~---~~------------ 155 (572)
||++|+..+.....+++. .||++||.||++.++|..+++.++++...... ..
T Consensus 98 ii~lt~~~~~~~~~~~~~-------------~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (250)
T 3r0j_A 98 ALFLTARDSLQDKIAGLT-------------LGGDDYVTKPFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEE 164 (250)
T ss_dssp EEEEECSTTHHHHHHHHT-------------STTCEEEESSCCHHHHHHHHHHHHHHHCC------CCEEEETTEEEETT
T ss_pred EEEEECCCCHHHHHHHHH-------------cCCcEEEeCCCCHHHHHHHHHHHHHhhccccccccceEEEECCEEEecc
Confidence 999999999999999998 99999999999999999999999987422110 00
Q ss_pred --------ccCCCChhHHHHHHHHHhc
Q 008254 156 --------LSDSLKPVKESVVSMLHLK 174 (572)
Q Consensus 156 --------~~~sLt~RE~eVL~ll~~~ 174 (572)
....||++|.++|.++..+
T Consensus 165 ~~~~~~~~~~~~LT~rE~~iL~~l~~~ 191 (250)
T 3r0j_A 165 THEVWKAGQPVSLSPTEFTLLRYFVIN 191 (250)
T ss_dssp TCCEEETTEEECCCHHHHHHHHHHHHT
T ss_pred ccEEEECCEEEecCHHHHHHHHHHHHC
Confidence 0125999999999999776
No 5
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.84 E-value=4.7e-20 Score=158.56 Aligned_cols=113 Identities=21% Similarity=0.311 Sum_probs=107.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------CCcE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLPT 91 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------dlPV 91 (572)
.+||||||++..+..++.+|+..||+|.++.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ ++||
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~--~~~dlvllD~~~p~-~~g~~~~~~l~~~~~~~~~pi 79 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSE--FTPDLIVLXIMMPV-MDGFTVLKKLQEKEEWKRIPV 79 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT--BCCSEEEECSCCSS-SCHHHHHHHHHTSTTTTTSCE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh--cCCCEEEEeccCCC-CcHHHHHHHHHhcccccCCCE
Confidence 589999999999999999999999999999999999999988 78999999999999 99999999985 5899
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
|++|+..+.....+++. .||++||.||++.++|..+++++++
T Consensus 80 i~~s~~~~~~~~~~~~~-------------~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 80 IVLTAKGGEEDESLALS-------------LGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEEESCCSHHHHHHHHH-------------TTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEEecCCchHHHHHHHh-------------cChhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999 9999999999999999999888764
No 6
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.84 E-value=3.7e-20 Score=173.58 Aligned_cols=158 Identities=11% Similarity=0.155 Sum_probs=135.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCEE-EEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYIV-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~-gy~V-~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dl 89 (572)
.+++||||||++..+..|+.+|+.. +|.+ ..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~--~~~dlvllD~~lp~-~~g~~~~~~lr~~~~~~ 80 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPG-MNGLETLDKLREKSLSG 80 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH--HCCSEEEEETTSTT-SCHHHHHHHHHHSCCCS
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CcHHHHHHHHHHhCCCC
Confidence 4579999999999999999999987 5887 689999999999988 78999999999999 99999999996 68
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCC----------------
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG---------------- 153 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~---------------- 153 (572)
|||++|+..+.+.+.+++. .||++||.||++.++|..+++.++++......
T Consensus 81 ~ii~ls~~~~~~~~~~~~~-------------~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (215)
T 1a04_A 81 RIVVFSVSNHEEDVVTALK-------------RGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRAT 147 (215)
T ss_dssp EEEEEECCCCHHHHHHHHH-------------TTCSEEEETTCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHC------
T ss_pred cEEEEECCCCHHHHHHHHH-------------cCCcEEEeCCCCHHHHHHHHHHHHcCCeecCHHHHHHHHHHhcccccC
Confidence 9999999999999999999 99999999999999999999998875211000
Q ss_pred -CcccCCCChhHHHHHHHHHhcchhhhhhcccccccc
Q 008254 154 -SALSDSLKPVKESVVSMLHLKLENGESKNEKSENTE 189 (572)
Q Consensus 154 -~~~~~sLt~RE~eVL~ll~~~len~e~~~e~s~~~e 189 (572)
......||+||.+|+.++..+..+++...+...+..
T Consensus 148 ~~~~~~~Lt~rE~~vl~~l~~g~s~~~Ia~~l~is~~ 184 (215)
T 1a04_A 148 TERDVNQLTPRERDILKLIAQGLPNKMIARRLDITES 184 (215)
T ss_dssp -CCCGGGSCHHHHHHHHHHHTTCCHHHHHHHHTCCHH
T ss_pred CCccccCCCHHHHHHHHHHHcCCCHHHHHHHHCCCHH
Confidence 111345999999999999999988887765544433
No 7
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.84 E-value=6.2e-20 Score=160.64 Aligned_cols=117 Identities=20% Similarity=0.306 Sum_probs=109.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------CC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------dl 89 (572)
+..+||||||++..+..|+.+|+..||.|..+.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ ++
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~-~~g~~~~~~lr~~~~~~~~ 79 (136)
T 3t6k_A 3 KPHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYK--NLPDALICDVLLPG-IDGYTLCKRVRQHPLTKTL 79 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSS-SCHHHHHHHHHHSGGGTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHcCCCcCCc
Confidence 35799999999999999999999999999999999999999998 78999999999999 99999999885 58
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
|||++|+..+.....+++. .||++||.||++.++|..+++.++++.
T Consensus 80 pii~~t~~~~~~~~~~~~~-------------~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 80 PILMLTAQGDISAKIAGFE-------------AGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp CEEEEECTTCHHHHHHHHH-------------HTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred cEEEEecCCCHHHHHHHHh-------------cCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999 999999999999999999999888754
No 8
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.84 E-value=1.8e-20 Score=173.17 Aligned_cols=142 Identities=18% Similarity=0.242 Sum_probs=120.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
.+++||||||++..+..|+.+|+..||.|.++.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~-~~g~~~~~~l~~~~~~~~i 82 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGA--EKFEFITVXLHLGN-DSGLSLIAPLCDLQPDARI 82 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTT--SCCSEEEECSEETT-EESHHHHHHHHHHCTTCEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeccCCC-ccHHHHHHHHHhcCCCCCE
Confidence 46799999999999999999999999999999999999999998 78999999999999 99999999996 7999
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcC--CCcccCCCChhHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAG--GSALSDSLKPVKESVVS 169 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~--~~~~~~sLt~RE~eVL~ 169 (572)
|++|+..+.+.+.+|+. .||++||.||++.++|..+++.++++..... .......++.++.+++.
T Consensus 83 i~lt~~~~~~~~~~a~~-------------~Ga~~~l~KP~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (184)
T 3rqi_A 83 LVLTGYASIATAVQAVK-------------DGADNYLAKPANVESILAALQTNASEVQAEEALENPVVLSVDRLEWEHIQ 149 (184)
T ss_dssp EEEESSCCHHHHHHHHH-------------HTCSEEEESSCCHHHHHHHTSTTHHHHHHHHHHHSCCCCC---CHHHHHH
T ss_pred EEEeCCCCHHHHHHHHH-------------hCHHHheeCCCCHHHHHHHHHHHHHHhhhcccccCcccccHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999998887643211 11223456667777766
Q ss_pred HHHh
Q 008254 170 MLHL 173 (572)
Q Consensus 170 ll~~ 173 (572)
.+..
T Consensus 150 ~~~~ 153 (184)
T 3rqi_A 150 RVLA 153 (184)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 9
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.83 E-value=7e-20 Score=156.71 Aligned_cols=113 Identities=19% Similarity=0.326 Sum_probs=107.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcEEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPVIiL 94 (572)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ ++|||++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlii~D~~~p~-~~g~~~~~~lr~~~~~~ii~~ 79 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEE--LQPDLILLDIMLPN-KDGVEVCREVRKKYDMPIIML 79 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT--TCCSEEEEETTSTT-THHHHHHHHHHTTCCSCEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCEEEE
Confidence 589999999999999999999999999999999999999998 78999999999999 99999999997 7999999
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
|+..+.....+++. .||++||.||++.++|..+++.+++
T Consensus 80 t~~~~~~~~~~~~~-------------~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 80 TAKDSEIDKVIGLE-------------IGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp EESSCHHHHHHHHH-------------TTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred ECCCChHHHHHHHh-------------CCcceeEcCCCCHHHHHHHHHHHHh
Confidence 99999999999998 9999999999999999999888765
No 10
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.83 E-value=3.1e-20 Score=180.89 Aligned_cols=151 Identities=16% Similarity=0.260 Sum_probs=132.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcEE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTI 92 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPVI 92 (572)
.+++||||||++..+..|+.+|+..||.|..+.++.+|+..+.. ..|||||+|+.||+ ++|+++++.++ ++|||
T Consensus 36 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~DlvllD~~lp~-~~G~~l~~~lr~~~~~~iI 112 (249)
T 3q9s_A 36 NEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARE--DHPDLILLDLGLPD-FDGGDVVQRLRKNSALPII 112 (249)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--SCCSEEEEECCSCH-HHHHHHHHHHHTTCCCCEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCC-CCHHHHHHHHHcCCCCCEE
Confidence 34799999999999999999999999999999999999999998 78999999999999 99999999997 69999
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCC-----------C-----cc
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG-----------S-----AL 156 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~-----------~-----~~ 156 (572)
++|+..+.+.+.+++. .||++||.||++.++|..+|+.++++...... . ..
T Consensus 113 ~lt~~~~~~~~~~a~~-------------~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (249)
T 3q9s_A 113 VLTARDTVEEKVRLLG-------------LGADDYLIKPFHPDELLARVKVQLRQRTSESLSMGDLTLDPQKRLVTYKGE 179 (249)
T ss_dssp EEESCCSHHHHHHHHH-------------HTCSEEEESSCCHHHHHHHHHHHHCCCCSCCEEETTEEEETTTTEEEETTE
T ss_pred EEECCCCHHHHHHHHH-------------CCCcEEEECCCCHHHHHHHHHHHHhhcccCceeECCEEEecccCEEEECCE
Confidence 9999999999999999 99999999999999999999998875321100 0 01
Q ss_pred cCCCChhHHHHHHHHHhc----chhhhhhc
Q 008254 157 SDSLKPVKESVVSMLHLK----LENGESKN 182 (572)
Q Consensus 157 ~~sLt~RE~eVL~ll~~~----len~e~~~ 182 (572)
...||+||.+||.++..+ +.+++...
T Consensus 180 ~~~LT~rE~evL~ll~~g~~~~~s~~eIa~ 209 (249)
T 3q9s_A 180 ELRLSPKEFDILALLIRQPGRVYSRQEIGQ 209 (249)
T ss_dssp EECCCHHHHHHHHHHHHSTTCCCCHHHHHH
T ss_pred EeecCHHHHHHHHHHHHCCCceEcHHHHHH
Confidence 235999999999999998 76666654
No 11
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.83 E-value=3.2e-22 Score=179.91 Aligned_cols=111 Identities=21% Similarity=0.338 Sum_probs=100.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTI 92 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVI 92 (572)
+.+|||||||++.++..|+.+|+..||+|+ ++.++++|++.+++ ..||+||+|++||+ |+|+++++.++ ++|||
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~--~~~DlvllDi~mP~-~~G~el~~~lr~~~ipvI 83 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARK--GQFDIAIIDVNLDG-EPSYPVADILAERNVPFI 83 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHH--CCSSEEEECSSSSS-CCSHHHHHHHHHTCCSSC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--CCCCEEEEecCCCC-CCHHHHHHHHHcCCCCEE
Confidence 568999999999999999999999999986 89999999999999 89999999999999 99999999997 89999
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHH
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVV 145 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vl 145 (572)
++|++.+... +.++|+++||.||++.++|..++++++
T Consensus 84 ~lTa~~~~~~----------------~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 84 FATGYGSKGL----------------DTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp CBCTTCTTSC----------------CSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred EEecCccHHH----------------HHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 9999876432 234899999999999999999876654
No 12
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.82 E-value=1e-19 Score=171.03 Aligned_cols=151 Identities=16% Similarity=0.318 Sum_probs=131.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVI 92 (572)
+++||||||++..+..|+.+|+..||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ ++|||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvllD~~l~~-~~g~~~~~~lr~~~~~~~ii 78 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALN--EPFDVVILDIMLPV-HDGWEILKSMRESGVNTPVL 78 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSS-SCHHHHHHHHHHTTCCCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCCEE
Confidence 4799999999999999999999999999999999999999998 78999999999999 99999999996 79999
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCCC------------------
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGS------------------ 154 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~~------------------ 154 (572)
++|+..+...+.+++. .||++||.||++.++|..+++.++++.......
T Consensus 79 ~ls~~~~~~~~~~~~~-------------~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (225)
T 1kgs_A 79 MLTALSDVEYRVKGLN-------------MGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGDLILDTATKKAYR 145 (225)
T ss_dssp EEESSCHHHHHHHTCC-------------CCCSEEEESSCCHHHHHHHHHHHHHHHCCSCSSEEEETTEEEETTTTEEEE
T ss_pred EEeCCCCHHHHHHHHh-------------CCccEEEeCCCCHHHHHHHHHHHHhhcccccCceEEECCEEEecccCEEEE
Confidence 9999988877777776 999999999999999999999999875321110
Q ss_pred -cccCCCChhHHHHHHHHHhc----chhhhhhcc
Q 008254 155 -ALSDSLKPVKESVVSMLHLK----LENGESKNE 183 (572)
Q Consensus 155 -~~~~sLt~RE~eVL~ll~~~----len~e~~~e 183 (572)
.....||++|.+++.++..+ +.+++....
T Consensus 146 ~~~~~~Lt~rE~~vL~~l~~~~~~~~s~~eIa~~ 179 (225)
T 1kgs_A 146 GSKEIDLTKKEYQILEYLVMNKNRVVTKEELQEH 179 (225)
T ss_dssp TTEEECCCHHHHHHHHHHHHTTTSCEEHHHHHHH
T ss_pred CCEEEecCHHHHHHHHHHHhCCCcccCHHHHHHH
Confidence 00135999999999999998 666666543
No 13
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.81 E-value=4.5e-19 Score=158.26 Aligned_cols=119 Identities=18% Similarity=0.277 Sum_probs=111.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------CC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------dl 89 (572)
++++||||||++..+..|+.+|+..||.|..+.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ ++
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlii~D~~l~~-~~g~~~~~~lr~~~~~~~~ 82 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSL--TRPDLIISDVLMPE-MDGYALCRWLKGQPDLRTI 82 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTT--CCCSEEEEESCCSS-SCHHHHHHHHHHSTTTTTS
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhCCCcCCC
Confidence 35799999999999999999999999999999999999999998 78999999999999 99999999885 58
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN 150 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~ 150 (572)
|||++|+..+.+...+++. .||++||.||++.++|..+++.++++...
T Consensus 83 pii~~s~~~~~~~~~~~~~-------------~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 83 PVILLTILSDPRDVVRSLE-------------CGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp CEEEEECCCSHHHHHHHHH-------------HCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred CEEEEECCCChHHHHHHHH-------------CCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 99999999999999999999999887543
No 14
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.81 E-value=7.1e-19 Score=152.48 Aligned_cols=117 Identities=21% Similarity=0.296 Sum_probs=110.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVI 92 (572)
+++||||||++..+..|+.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|||
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ii 79 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIEN--EFFNLALFXIKLPD-MEGTELLEKAHKLRPGMKKI 79 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEECSBCSS-SBHHHHHHHHHHHCTTSEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc--CCCCEEEEecCCCC-CchHHHHHHHHhhCCCCcEE
Confidence 5799999999999999999999999999999999999999998 78999999999999 99999999986 69999
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
++|+..+.....+++. .||++||.||++.++|..+++.++++..
T Consensus 80 ~~s~~~~~~~~~~~~~-------------~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 123 (132)
T 3crn_A 80 MVTGYASLENSVFSLN-------------AGADAYIMKPVNPRDLLEKIKEKLDEQE 123 (132)
T ss_dssp EEESCCCHHHHHHHHH-------------TTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEeccccHHHHHHHHh-------------ccchhhccCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999998 9999999999999999999999887643
No 15
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.81 E-value=1.1e-18 Score=152.28 Aligned_cols=122 Identities=22% Similarity=0.331 Sum_probs=112.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
.+++||||||++..+..|+.+|+..||.|..+.++.+|+..+..+...||+||+|+.||+ ++|+++++.++ ++||
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~i 80 (143)
T 3jte_A 2 SLAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPK-LSGMDILREIKKITPHMAV 80 (143)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSS-SCHHHHHHHHHHHCTTCEE
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCC-CcHHHHHHHHHHhCCCCeE
Confidence 467999999999999999999999999999999999999999832268999999999999 99999999997 7999
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhc
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNA 151 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~ 151 (572)
|++|+..+.+...+++. .||++||.||++.++|..+++.++++....
T Consensus 81 i~ls~~~~~~~~~~~~~-------------~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~ 127 (143)
T 3jte_A 81 IILTGHGDLDNAILAMK-------------EGAFEYLRKPVTAQDLSIAINNAINRKKLL 127 (143)
T ss_dssp EEEECTTCHHHHHHHHH-------------TTCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHH-------------hCcceeEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999999876543
No 16
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.81 E-value=8e-19 Score=155.81 Aligned_cols=123 Identities=15% Similarity=0.232 Sum_probs=114.8
Q ss_pred cCCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----
Q 008254 12 KDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (572)
Q Consensus 12 ~~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---- 87 (572)
..+..+++||||||+...+..|+.+|+..||.|..+.++.+|++.+.+ ..|||||+|+.||+ ++|+++++.++
T Consensus 9 ~~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~ 85 (153)
T 3hv2_A 9 ATVTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLAS--REVDLVISAAHLPQ-MDGPTLLARIHQQYP 85 (153)
T ss_dssp CCCCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSS-SCHHHHHHHHHHHCT
T ss_pred hhccCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHc--CCCCEEEEeCCCCc-CcHHHHHHHHHhHCC
Confidence 345567899999999999999999999999999999999999999998 78999999999999 99999999996
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCC-ccEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008254 88 DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLG-AVEFLRKPLSEDKLRNLWQHVVHKAFN 150 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~G-A~dYL~KPvs~eeL~~~~q~Vlrr~~~ 150 (572)
++|||++|+..+.....+++. .| |++||.||++.++|..+|+.++++...
T Consensus 86 ~~~ii~~s~~~~~~~~~~~~~-------------~g~~~~~l~KP~~~~~l~~~i~~~l~~~~~ 136 (153)
T 3hv2_A 86 STTRILLTGDPDLKLIAKAIN-------------EGEIYRYLSKPWDDQELLLALRQALEHQHS 136 (153)
T ss_dssp TSEEEEECCCCCHHHHHHHHH-------------TTCCSEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCHHHHHHHHh-------------CCCcceEEeCCCCHHHHHHHHHHHHHHhHH
Confidence 799999999999999999999 99 999999999999999999999987644
No 17
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.81 E-value=4.7e-19 Score=156.63 Aligned_cols=117 Identities=21% Similarity=0.322 Sum_probs=104.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-------
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------- 87 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------- 87 (572)
.++++||||||++..+..|+.+|+..||.|..+.++++|++.+.. ..||+||+|+.||+ ++|+++++.++
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~-~~g~~~~~~lr~~~~~~~ 88 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAE--EDYDAVIVDLHMPG-MNGLDMLKQLRVMQASGM 88 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHH--SCCSEEEEESCCSS-SCHHHHHHHHHHHHHTTC
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhchhccC
Confidence 456899999999999999999999999999999999999999998 78999999999999 99999999885
Q ss_pred -CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 88 -DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 88 -dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
.+|||++|+..+.+.+.+++. .||++||.||++.++|..+++.+...
T Consensus 89 ~~~pii~~s~~~~~~~~~~~~~-------------~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 89 RYTPVVVLSADVTPEAIRACEQ-------------AGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCCCEEEEESCCCHHHHHHHHH-------------TTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCCeEEEEeCCCCHHHHHHHHH-------------cChhheeeCCCCHHHHHHHHHHHHHh
Confidence 489999999999999999999 99999999999999999988877654
No 18
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.81 E-value=1.1e-18 Score=147.24 Aligned_cols=114 Identities=16% Similarity=0.322 Sum_probs=108.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIi 93 (572)
++||||||++..+..++.+|+..||.|..+.++.+|+..+.. ..||++|+|+.||+ ++|+++++.++ .+|||+
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--~~~dlil~D~~l~~-~~g~~~~~~l~~~~~~~~ii~ 77 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE--HIPDIAIVDLGLPD-EDGLSLIRRWRSNDVSLPILV 77 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEECSCCSS-SCHHHHHHHHHHTTCCSCEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhc--cCCCEEEEecCCCC-CCHHHHHHHHHhcCCCCCEEE
Confidence 589999999999999999999999999999999999999998 78999999999999 99999999986 699999
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
+|+..+.....+++. .||++||.||++.++|..+++.++++
T Consensus 78 ~s~~~~~~~~~~~~~-------------~g~~~~l~kp~~~~~l~~~i~~~~~~ 118 (121)
T 2pl1_A 78 LTARESWQDKVEVLS-------------AGADDYVTKPFHIEEVMARMQALMRR 118 (121)
T ss_dssp EESCCCHHHHHHHHH-------------TTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHH-------------cCccceEECCCCHHHHHHHHHHHHHh
Confidence 999999999999998 99999999999999999999988865
No 19
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.81 E-value=2.9e-19 Score=168.74 Aligned_cols=152 Identities=17% Similarity=0.238 Sum_probs=130.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
..++||||||++..+..|..+|+..||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ ++||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvllD~~l~~-~~g~~~~~~l~~~~~~~~i 82 (233)
T 1ys7_A 6 TSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATE--NRPDAIVLDINMPV-LDGVSVVTALRAMDNDVPV 82 (233)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESSCSS-SCHHHHHHHHHHTTCCCCE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCCE
Confidence 34799999999999999999999999999999999999999998 78999999999999 99999999996 7999
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHh--cC-CC--------------
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN--AG-GS-------------- 154 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~--~~-~~-------------- 154 (572)
|++|+..+.....+++. .||++||.||++.++|..+++.++++... .. ..
T Consensus 83 i~lt~~~~~~~~~~~~~-------------~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (233)
T 1ys7_A 83 CVLSARSSVDDRVAGLE-------------AGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPLEVDIPGR 149 (233)
T ss_dssp EEEECCCTTTCCCTTTT-------------TTCSEEEESSCCHHHHHHHHHHHHHHHHCCCCCCCCEEEETTEEEETTTT
T ss_pred EEEEcCCCHHHHHHHHH-------------cCCCEEEeCCCCHHHHHHHHHHHHhhccccccccCcccccCCeEEccCcc
Confidence 99999888666556555 99999999999999999999999987643 11 10
Q ss_pred -----cccCCCChhHHHHHHHHHhc----chhhhhhcc
Q 008254 155 -----ALSDSLKPVKESVVSMLHLK----LENGESKNE 183 (572)
Q Consensus 155 -----~~~~sLt~RE~eVL~ll~~~----len~e~~~e 183 (572)
.....||++|.+++.++..+ +.+++....
T Consensus 150 ~~~~~~~~~~Lt~rE~~vL~~l~~g~~~~~s~~~Ia~~ 187 (233)
T 1ys7_A 150 RARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLEL 187 (233)
T ss_dssp EEEETTEECCCCHHHHHHHHHHHHTTTCCBCHHHHHHH
T ss_pred EEEECCEEeccCHHHHHHHHHHHhCCCCeEcHHHHHHH
Confidence 00235999999999999999 666666543
No 20
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.81 E-value=1.3e-18 Score=149.00 Aligned_cols=115 Identities=16% Similarity=0.306 Sum_probs=107.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVI 92 (572)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~ii 79 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPD--VRNGVLVTDLRMPD-MSGVELLRNLGDLKINIPSI 79 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGG--CCSEEEEEECCSTT-SCHHHHHHHHHHTTCCCCEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCCEE
Confidence 4699999999999999999999999999999999999999988 78999999999999 99999999986 68999
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
++|+..+.....+++. .||++||.||++.++|..+++.++++
T Consensus 80 ~~s~~~~~~~~~~~~~-------------~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 80 VITGHGDVPMAVEAMK-------------AGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EEECTTCHHHHHHHHH-------------TTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EEECCCCHHHHHHHHH-------------hCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999 99999999999999999988887653
No 21
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.80 E-value=3.5e-20 Score=176.65 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=135.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-CEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCc
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMD-YIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~g-y~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlP 90 (572)
+++||||||++..+..|+.+|+..+ |.++ ++.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|
T Consensus 1 m~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~--~~~dlvllD~~lp~-~~g~~~~~~lr~~~~~~~ 77 (225)
T 3c3w_A 1 MVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPA--ARPDVAVLDVRLPD-GNGIELCRDLLSRMPDLR 77 (225)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHH--HCCSEEEECSEETT-EEHHHHHHHHHHHCTTCE
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh--cCCCEEEEeCCCCC-CCHHHHHHHHHHhCCCCc
Confidence 4799999999999999999999886 8854 89999999999988 78999999999999 99999999986 799
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCC----------------C
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG----------------S 154 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~----------------~ 154 (572)
||++|+..+.+.+.+++. .||++||.||++.++|..+++.++++...... .
T Consensus 78 ii~lt~~~~~~~~~~~~~-------------~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (225)
T 3c3w_A 78 CLILTSYTSDEAMLDAIL-------------AGASGYVVKDIKGMELARAVKDVGAGRSLLDNRAAAALMAKLRGAAEKQ 144 (225)
T ss_dssp EEEGGGSSSHHHHHHHHH-------------HTCCCHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCHHHHHHHHH-------------CCCCEEEECCCCHHHHHHHHHHHHcCCeeeCHHHHHHHHHhcccccccc
Confidence 999999999999999999 99999999999999999999999876421110 0
Q ss_pred cccCCCChhHHHHHHHHHhcchhhhhhcccccccc
Q 008254 155 ALSDSLKPVKESVVSMLHLKLENGESKNEKSENTE 189 (572)
Q Consensus 155 ~~~~sLt~RE~eVL~ll~~~len~e~~~e~s~~~e 189 (572)
.....||+||.+|+.++..++.+++...+...+..
T Consensus 145 ~~~~~LT~rE~~vL~~l~~g~s~~eIa~~l~is~~ 179 (225)
T 3c3w_A 145 DPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEK 179 (225)
T ss_dssp CTTTTSCHHHHHHHHHHHTTCCHHHHHHHHTCCHH
T ss_pred cccCCCCHHHHHHHHHHHCCCCHHHHHHHhCCCHH
Confidence 12346999999999999999998888766554443
No 22
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.80 E-value=7.5e-19 Score=151.74 Aligned_cols=115 Identities=16% Similarity=0.305 Sum_probs=105.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------CC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~-V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------dl 89 (572)
+++||||||++..+..|+.+|+..||. |..+.++.+|+..+... ..||+||+|+.||+ ++|+++++.++ ++
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~~p~-~~g~~~~~~lr~~~~~~~~ 82 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDAN-ADTKVLITDWNMPE-MNGLDLVKKVRSDSRFKEI 82 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHC-TTCCEEEECSCCSS-SCHHHHHHHHHTSTTCTTC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCCC
Confidence 579999999999999999999999995 88999999999988762 36999999999999 99999999986 58
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
|||++|+..+...+.+++. .||++||.||++.++|..+++.++.
T Consensus 83 pii~~s~~~~~~~~~~~~~-------------~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 83 PIIMITAEGGKAEVITALK-------------AGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp CEEEEESCCSHHHHHHHHH-------------HTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred eEEEEeCCCChHHHHHHHH-------------cCccEEEeCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999 9999999999999999998887764
No 23
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.80 E-value=1.2e-18 Score=152.54 Aligned_cols=118 Identities=18% Similarity=0.319 Sum_probs=110.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcEE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTI 92 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPVI 92 (572)
..++||||||++..+..|+.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||
T Consensus 3 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvllD~~l~~-~~g~~l~~~l~~~~~~~ii 79 (136)
T 2qzj_A 3 LQTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFS--NKYDLIFLEIILSD-GDGWTLCKKIRNVTTCPIV 79 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--CCCSEEEEESEETT-EEHHHHHHHHHTTCCCCEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHccCCCCCEE
Confidence 45799999999999999999999999999999999999999998 78999999999999 99999999997 68999
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
++|+..+...+.+++. .||++||.||++.++|..+++.++++..
T Consensus 80 ~ls~~~~~~~~~~~~~-------------~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 123 (136)
T 2qzj_A 80 YMTYINEDQSILNALN-------------SGGDDYLIKPLNLEILYAKVKAILRRMN 123 (136)
T ss_dssp EEESCCCHHHHHHHHH-------------TTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHH-------------cCCcEEEECCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999 9999999999999999999999887654
No 24
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.80 E-value=3.9e-19 Score=167.91 Aligned_cols=150 Identities=16% Similarity=0.250 Sum_probs=131.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcEEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPVIiL 94 (572)
++||||||++..+..|+.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|||++
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvllD~~l~~-~~g~~~~~~l~~~~~~~ii~l 81 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDR--AGADIVLLDLMLPG-MSGTDVCKQLRARSSVPVIMV 81 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH--HCCSEEEEESSCSS-SCHHHHHHHHHHHCSCSEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEECCCCC-CCHHHHHHHHHcCCCCCEEEE
Confidence 699999999999999999999999999999999999999988 78999999999999 99999999997 7999999
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCC----C----------------
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG----S---------------- 154 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~----~---------------- 154 (572)
|+..+.....+++. .||++||.||++.++|..+++.++++...... .
T Consensus 82 t~~~~~~~~~~~~~-------------~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (230)
T 2oqr_A 82 TARDSEIDKVVGLE-------------LGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERHVV 148 (230)
T ss_dssp ECCHHHHHHHHHHH-------------HCCSCCCCSSCCHHHHHHHHHHHHTTTTCTTSTTCCSCEEETTEEEETTTTEE
T ss_pred eCCCcHHHHHHHHH-------------cCCCEEEeCCCCHHHHHHHHHHHHhhcccccccccccceeecCEEEeccccEE
Confidence 99988888889988 99999999999999999999999886421110 0
Q ss_pred ---cccCCCChhHHHHHHHHHhc----chhhhhhcc
Q 008254 155 ---ALSDSLKPVKESVVSMLHLK----LENGESKNE 183 (572)
Q Consensus 155 ---~~~~sLt~RE~eVL~ll~~~----len~e~~~e 183 (572)
.....||++|.+++.++..+ +.+++....
T Consensus 149 ~~~~~~~~Lt~rE~~vL~~l~~~~~~~~s~~~Ia~~ 184 (230)
T 2oqr_A 149 SVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 184 (230)
T ss_dssp EESSBCCCCCHHHHHHHHHHHHTTTSCEEHHHHHHH
T ss_pred EECCeeeecCHHHHHHHHHHHhCCCceEcHHHHHHH
Confidence 01235999999999999998 666666543
No 25
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.79 E-value=1.3e-18 Score=146.17 Aligned_cols=114 Identities=21% Similarity=0.393 Sum_probs=107.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcEEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPVIiL 94 (572)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~ii~~ 78 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA--EQPDIIILDLMLPE-IDGLEVAKTIRKTSSVPILML 78 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEECSSCSS-SCHHHHHHHHHHHCCCCEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHh--CCCCEEEEeccCCC-CCHHHHHHHHHhCCCCCEEEE
Confidence 589999999999999999999999999999999999999988 78999999999999 99999999986 7999999
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
|+..+.....+++. .||++||.||++.++|..+++.++++
T Consensus 79 s~~~~~~~~~~~~~-------------~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 79 SAKDSEFDKVIGLE-------------LGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp ESCCSHHHHHHHHH-------------HTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred ecCCchHHHHHHHh-------------CCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 99999888889988 99999999999999999999887753
No 26
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.79 E-value=5.2e-19 Score=153.70 Aligned_cols=120 Identities=16% Similarity=0.259 Sum_probs=107.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------C
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------D 88 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------d 88 (572)
+.+++||||||+...+..|+.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ +
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ 80 (140)
T 3grc_A 4 APRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVAR--RPYAAMTVDLNLPD-QDGVSLIRALRRDSRTRD 80 (140)
T ss_dssp -CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH--SCCSEEEECSCCSS-SCHHHHHHHHHTSGGGTT
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhCcccCC
Confidence 456899999999999999999999999999999999999999998 78999999999999 99999999886 6
Q ss_pred CcEEEEeCCCChHHHH-HHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008254 89 LPTIITSNIHCLSTMM-KCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN 150 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~-kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~ 150 (572)
+|||++|+..+..... .++. .||++||.||++.++|..+++.++++...
T Consensus 81 ~~ii~~s~~~~~~~~~~~~~~-------------~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 81 LAIVVVSANAREGELEFNSQP-------------LAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp CEEEEECTTHHHHHHHHCCTT-------------TCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred CCEEEEecCCChHHHHHHhhh-------------cCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 8999999987665554 5555 99999999999999999999999987654
No 27
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.79 E-value=3e-18 Score=146.37 Aligned_cols=116 Identities=18% Similarity=0.314 Sum_probs=108.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------C
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDY-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------D 88 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy-~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------d 88 (572)
+.++||||||++..+..++.+|+..|| .|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~-~~g~~l~~~l~~~~~~~~ 79 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYGFVISDWNMPN-MDGLELLKTIRAXXAMSA 79 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTT--CCCCEEEEESCCSS-SCHHHHHHHHHC--CCTT
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHhhcccCC
Confidence 457899999999999999999999999 78899999999999988 78999999999999 99999999986 5
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 89 LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
+|||++|+..+.....+++. .||++||.||++.++|..+++.++++
T Consensus 80 ~~ii~~s~~~~~~~~~~~~~-------------~ga~~~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 80 LPVLMVTAEAKKENIIAAAQ-------------AGASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp CCEEEEESSCCHHHHHHHHH-------------TTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CcEEEEecCccHHHHHHHHH-------------hCcCceeecCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999 99999999999999999999988764
No 28
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.79 E-value=3.3e-19 Score=170.63 Aligned_cols=150 Identities=15% Similarity=0.219 Sum_probs=130.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcEEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPVIiL 94 (572)
++||||||++..+..|+.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|||++
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvilD~~l~~-~~g~~~~~~lr~~~~~~ii~l 82 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRE--LRPDLVLLDLMLPG-MNGIDVCRVLRADSGVPIVML 82 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHH--HCCSEEEEESSCSS-SCHHHHHHHHHTTCCCCEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhCCCCcEEEE
Confidence 699999999999999999999999999999999999999988 78999999999999 99999999997 6999999
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCCC-------------------c
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGS-------------------A 155 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~~-------------------~ 155 (572)
|+..+...+.+++. .||++||.||++.++|..+++.++++....... .
T Consensus 83 t~~~~~~~~~~~~~-------------~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (238)
T 2gwr_A 83 TAKTDTVDVVLGLE-------------SGADDYIMKPFKPKELVARVRARLRRNDDEPAEMLSIADVEIDVPAHKVTRNG 149 (238)
T ss_dssp EETTCCSCHHHHHH-------------TTCCEEEEESCCHHHHHHHHHHHCCCCSSCCCCEEEETTEEEETTTTEEEETT
T ss_pred eCCCCHHHHHHHHH-------------CCCCEEEeCCCCHHHHHHHHHHHHhhcccCcccceecCceEEcccccEEEECC
Confidence 99999888889998 999999999999999999999888753211100 0
Q ss_pred ccCCCChhHHHHHHHHHhc----chhhhhhcc
Q 008254 156 LSDSLKPVKESVVSMLHLK----LENGESKNE 183 (572)
Q Consensus 156 ~~~sLt~RE~eVL~ll~~~----len~e~~~e 183 (572)
....||++|.+||.++..+ +.+++...+
T Consensus 150 ~~~~LT~rE~~vL~~l~~~~~~~~s~~eIa~~ 181 (238)
T 2gwr_A 150 EQISLTPLEFDLLVALARKPRQVFTRDVLLEQ 181 (238)
T ss_dssp EEECCCHHHHHHHHHHHHSTTCCBCHHHHHHH
T ss_pred EEcccCHHHHHHHHHHHHCCCceecHHHHHHH
Confidence 0135999999999999998 666666543
No 29
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.79 E-value=1.1e-18 Score=152.07 Aligned_cols=116 Identities=16% Similarity=0.311 Sum_probs=104.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHhhc---CCCCeeEEEEeCCCCCCCChHHHHHHhc-----
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY-IVSTFYNENEALSAFSD---KPENFHVAIVEVTTSNTDGSFKFLETAK----- 87 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy-~V~ta~~a~EAL~~L~e---~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----- 87 (572)
.++||||||++..+..|+.+|+..|| .|.++.++.+|++.+.. ....||+||+|+.||+ ++|+++++.++
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~-~~G~~~~~~lr~~~~~ 80 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPK-VDGLLSTKMIRRDLGY 80 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSS-SCHHHHHHHHHHHSCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCC-CChHHHHHHHHhhcCC
Confidence 46899999999999999999999998 58899999999998864 0136899999999999 99999999886
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 88 DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
.+|||++|+..+.....+++. .||++||.||++.++|..+++.++.
T Consensus 81 ~~~ii~lt~~~~~~~~~~~~~-------------~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 81 TSPIVALTAFADDSNIKECLE-------------SGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp CSCEEEEESCCSHHHHHHHHH-------------TTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCHHHHHHHHH-------------cCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 579999999999999999999 9999999999999999998877654
No 30
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.79 E-value=2.3e-18 Score=152.38 Aligned_cols=119 Identities=13% Similarity=0.272 Sum_probs=107.4
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHhh---------cCCCCeeEEEEeCCCCCCCChHHH
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFS---------DKPENFHVAIVEVTTSNTDGSFKF 82 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~---------e~~~~pDLVIvDv~mPd~mdG~~l 82 (572)
|...++||||||++..+..|+.+|+..|| .|..+.++.+|++.++ . ..|||||+|+.||+ ++|+++
T Consensus 1 M~~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~--~~~dliilD~~l~~-~~g~~~ 77 (152)
T 3heb_A 1 MSLSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSA--GRAQLVLLDLNLPD-MTGIDI 77 (152)
T ss_dssp ----CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGT--TCBEEEEECSBCSS-SBHHHH
T ss_pred CCCCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhcccccccccc--CCCCEEEEeCCCCC-CcHHHH
Confidence 34568999999999999999999999998 8999999999999996 4 68999999999999 999999
Q ss_pred HHHhc------CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 83 LETAK------DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 83 Le~Ir------dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
++.++ ++|||++|+..+...+.+++. .||++||.||++.++|..+++.+.+..
T Consensus 78 ~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~-------------~g~~~~l~KP~~~~~l~~~i~~~~~~~ 136 (152)
T 3heb_A 78 LKLVKENPHTRRSPVVILTTTDDQREIQRCYD-------------LGANVYITKPVNYENFANAIRQLGLFF 136 (152)
T ss_dssp HHHHHHSTTTTTSCEEEEESCCCHHHHHHHHH-------------TTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCEEEEecCCCHHHHHHHHH-------------CCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99886 589999999999999999999 999999999999999999999886543
No 31
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.79 E-value=2.8e-18 Score=150.08 Aligned_cols=121 Identities=15% Similarity=0.255 Sum_probs=112.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYI--VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------ 87 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~--V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------ 87 (572)
.+++||||||+...+..|+.+|+..||. |..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~D~~l~~-~~g~~~~~~lr~~~~~~ 80 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQ--AKYDLIILDIGLPI-ANGFEVMSAVRKPGANQ 80 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTT--CCCSEEEECTTCGG-GCHHHHHHHHHSSSTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhccccc
Confidence 4689999999999999999999999987 8899999999999998 78999999999999 99999999986
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCC-CHHHHHHHHHHHHHHHHhcC
Q 008254 88 DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL-SEDKLRNLWQHVVHKAFNAG 152 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv-s~eeL~~~~q~Vlrr~~~~~ 152 (572)
++|||++|+..+.+...+++. .||++||.||+ +.++|..+|+.++++.....
T Consensus 81 ~~pii~~s~~~~~~~~~~~~~-------------~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~~~ 133 (144)
T 3kht_A 81 HTPIVILTDNVSDDRAKQCMA-------------AGASSVVDKSSNNVTDFYGRIYAIFSYWLTVN 133 (144)
T ss_dssp TCCEEEEETTCCHHHHHHHHH-------------TTCSEEEECCTTSHHHHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEeCCCCHHHHHHHHH-------------cCCCEEEECCCCcHHHHHHHHHHHHHHHHhcc
Confidence 589999999999999999999 99999999999 99999999999999876543
No 32
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.79 E-value=1.4e-18 Score=149.14 Aligned_cols=117 Identities=16% Similarity=0.285 Sum_probs=102.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
.+++||||||++..+..|+.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~i 82 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG--FTPDLMICDIAMPR-MNGLKLLEHIRNRGDQTPV 82 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTT--CCCSEEEECCC------CHHHHHHHHHTTCCCCE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhc--CCCCEEEEecCCCC-CCHHHHHHHHHhcCCCCCE
Confidence 45799999999999999999999999999999999999999988 78999999999999 99999999997 6999
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCC-CHHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL-SEDKLRNLWQHVVHKA 148 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv-s~eeL~~~~q~Vlrr~ 148 (572)
|++|+..+.....+++. .||++||.||+ +.++|..+++.++++.
T Consensus 83 i~~t~~~~~~~~~~~~~-------------~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 83 LVISATENMADIAKALR-------------LGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EEEECCCCHHHHHHHHH-------------HCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEEEcCCCHHHHHHHHH-------------cCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 99999999999999999 99999999999 8999999999888654
No 33
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.79 E-value=3.6e-18 Score=144.90 Aligned_cols=116 Identities=13% Similarity=0.246 Sum_probs=108.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcEEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTII 93 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPVIi 93 (572)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~ii~ 79 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--YDINLVIMDINLPG-KNGLLLARELREQANVALMF 79 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--SCCSEEEECSSCSS-SCHHHHHHHHHHHCCCEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCC-CCHHHHHHHHHhCCCCcEEE
Confidence 3589999999999999999999999999999999999999998 78999999999999 99999999986 799999
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
+|+..+.....+++. .||++||.||++.++|..+++.++++.
T Consensus 80 ~s~~~~~~~~~~~~~-------------~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 80 LTGRDNEVDKILGLE-------------IGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp EESCCSHHHHHHHHH-------------HTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCChHHHHHHHh-------------cCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 999999988899998 999999999999999999999888653
No 34
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.79 E-value=3.9e-18 Score=144.49 Aligned_cols=114 Identities=11% Similarity=0.240 Sum_probs=107.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcEEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPVIiL 94 (572)
.+||||||++..+..++.+|+..||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ .+|||++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~ii~~ 79 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN--QSVDLILLDINLPD-ENGLMLTRALRERSTVGIILV 79 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSS-SCHHHHHHHHHTTCCCEEEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhc--CCCCEEEEeCCCCC-CChHHHHHHHHhcCCCCEEEE
Confidence 589999999999999999999999999999999999999988 78999999999999 99999999996 6999999
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
|+..+.....+++. .||++||.||++.++|..+++.++++
T Consensus 80 s~~~~~~~~~~~~~-------------~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 80 TGRSDRIDRIVGLE-------------MGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp ESSCCHHHHHHHHH-------------HTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ECCCChhhHHHHHH-------------hCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 99999998899998 99999999999999999999988865
No 35
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.79 E-value=1.6e-18 Score=149.00 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=102.4
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------ 87 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------ 87 (572)
|+..++||||||++..+..|+.+|+ .+|.|..+.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++
T Consensus 1 M~~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~ 76 (133)
T 3nhm_A 1 MSLKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALA--HPPDVLISDVNMDG-MDGYALCGHFRSEPTLK 76 (133)
T ss_dssp ----CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHH--SCCSEEEECSSCSS-SCHHHHHHHHHHSTTTT
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhCCccC
Confidence 3456899999999999999999999 89999999999999999998 78999999999999 99999999886
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008254 88 DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN 150 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~ 150 (572)
++|||++|+..+... .+++. .||++||.||++.++|..+++.++++...
T Consensus 77 ~~pii~~s~~~~~~~-~~~~~-------------~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 77 HIPVIFVSGYAPRTE-GPADQ-------------PVPDAYLVKPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp TCCEEEEESCCC------TTS-------------CCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred CCCEEEEeCCCcHhH-HHHhh-------------cCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence 689999999887666 66666 99999999999999999999999987643
No 36
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.79 E-value=1.5e-18 Score=150.34 Aligned_cols=120 Identities=21% Similarity=0.267 Sum_probs=112.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
.+++||||||++..+..|+.+|+..+|.|..+.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ .+||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~i 82 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGL--HAPDVIITDIRMPK-LGGLEMLDRIKAGGAKPYV 82 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHH--HCCSEEEECSSCSS-SCHHHHHHHHHHTTCCCEE
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCcE
Confidence 35899999999999999999999999999999999999999998 78999999999999 99999999997 6999
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhc
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNA 151 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~ 151 (572)
|++|+..+.+...+++. .||++||.||++.++|..++++++++....
T Consensus 83 i~~s~~~~~~~~~~~~~-------------~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 129 (137)
T 3hdg_A 83 IVISAFSEMKYFIKAIE-------------LGVHLFLPKPIEPGRLMETLEDFRHIKLAK 129 (137)
T ss_dssp EECCCCCCHHHHHHHHH-------------HCCSEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCcChHHHHHHHh-------------CCcceeEcCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999 999999999999999999999999876543
No 37
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.79 E-value=1.2e-18 Score=151.68 Aligned_cols=121 Identities=22% Similarity=0.327 Sum_probs=110.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCC-CChHHHHHHhc----CC
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK----DL 89 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~-mdG~~lLe~Ir----dl 89 (572)
..+++||||||++..+..|+.+|+..||.|.++.++.+|++.+.+ ..||+||+|+.||+. ++|+++++.++ ++
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~ 81 (136)
T 3kto_A 4 NHHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQIS--DDAIGMIIEAHLEDKKDSGIELLETLVKRGFHL 81 (136)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCC--TTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCC
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc--cCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCC
Confidence 456799999999999999999999999999999999999999988 789999999999982 48999999997 79
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN 150 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~ 150 (572)
|||++|+..+.+...+++. .||++||.||++.++|..++++++.+...
T Consensus 82 ~ii~~s~~~~~~~~~~~~~-------------~ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 129 (136)
T 3kto_A 82 PTIVMASSSDIPTAVRAMR-------------ASAADFIEKPFIEHVLVHDVQQIINGAKE 129 (136)
T ss_dssp CEEEEESSCCHHHHHHHHH-------------TTCSEEEESSBCHHHHHHHHHHHHHHHC-
T ss_pred CEEEEEcCCCHHHHHHHHH-------------cChHHheeCCCCHHHHHHHHHHHHhccCC
Confidence 9999999999999999999 99999999999999999999999887543
No 38
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.79 E-value=2.1e-18 Score=145.74 Aligned_cols=113 Identities=19% Similarity=0.296 Sum_probs=105.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~-V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
+++||||||++..+..++.+|+..||. +..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~--~~~dlil~D~~l~~-~~g~~~~~~l~~~~~~~~i 78 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE--LKPDIVTMDITMPE-MNGIDAIKEIMKIDPNAKI 78 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HCCSEEEEECSCGG-GCHHHHHHHHHHHCTTCCE
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCC-CcHHHHHHHHHhhCCCCeE
Confidence 468999999999999999999999999 5589999999999988 78999999999999 99999999986 6999
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVV 145 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vl 145 (572)
|++|+..+.....+++. .||++||.||++.++|..+++.++
T Consensus 79 i~~s~~~~~~~~~~~~~-------------~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 79 IVCSAMGQQAMVIEAIK-------------AGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEEECTTCHHHHHHHHH-------------TTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHH-------------hCcceeEeCCCCHHHHHHHHHHHh
Confidence 99999999999999998 999999999999999999887654
No 39
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.79 E-value=3e-18 Score=148.20 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=107.8
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCC-eeEEEEeCCCCCCCChHHHHHHhc-----
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPEN-FHVAIVEVTTSNTDGSFKFLETAK----- 87 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~-pDLVIvDv~mPd~mdG~~lLe~Ir----- 87 (572)
++.+.+||||||++..+..|+.+|+..||.|..+.++.+|+..+.. .. ||+||+|+.||+ ++|+++++.++
T Consensus 4 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~ 80 (136)
T 3hdv_A 4 VAARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHY--QKRIGLMITDLRMQP-ESGLDLIRTIRASERA 80 (136)
T ss_dssp ---CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHH--CTTEEEEEECSCCSS-SCHHHHHHHHHTSTTT
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHh--CCCCcEEEEeccCCC-CCHHHHHHHHHhcCCC
Confidence 3456899999999999999999999999999999999999999987 55 999999999999 99999999986
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 88 DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
++|||++|+..+.+...+++. .||++||.||++.++|..+++.++.+..
T Consensus 81 ~~~ii~~s~~~~~~~~~~~~~-------------~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 81 ALSIIVVSGDTDVEEAVDVMH-------------LGVVDFLLKPVDLGKLLELVNKELKIGE 129 (136)
T ss_dssp TCEEEEEESSCCHHHHHHHHH-------------TTCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred CCCEEEEeCCCChHHHHHHHh-------------CCcceEEeCCCCHHHHHHHHHHHhcCch
Confidence 479999999999999999999 9999999999999999999988876543
No 40
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.78 E-value=2.4e-18 Score=152.28 Aligned_cols=119 Identities=16% Similarity=0.190 Sum_probs=109.6
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~g--y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---- 87 (572)
...+++||||||+...+..|+.+|+..+ |.|..+.++.+|++.+.. ..|||||+|+.|++ ++|+++++.++
T Consensus 17 ~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlii~D~~l~~-~~g~~~~~~l~~~~~ 93 (150)
T 4e7p_A 17 RGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEK--ESVDIAILDVEMPV-KTGLEVLEWIRSEKL 93 (150)
T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTT--SCCSEEEECSSCSS-SCHHHHHHHHHHTTC
T ss_pred CCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhc--cCCCEEEEeCCCCC-CcHHHHHHHHHHhCC
Confidence 4457899999999999999999999887 789999999999999998 78999999999999 99999999997
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 88 DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
++|||++|+..+.+...+++. .||++||.||++.++|..+++.++++.
T Consensus 94 ~~~ii~ls~~~~~~~~~~~~~-------------~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 94 ETKVVVVTTFKRAGYFERAVK-------------AGVDAYVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp SCEEEEEESCCCHHHHHHHHH-------------TTCSEEEETTSCHHHHHHHHHHHHTTC
T ss_pred CCeEEEEeCCCCHHHHHHHHH-------------CCCcEEEecCCCHHHHHHHHHHHHcCC
Confidence 699999999999999999999 999999999999999999998888753
No 41
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.78 E-value=2.2e-18 Score=146.83 Aligned_cols=113 Identities=19% Similarity=0.285 Sum_probs=106.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIi 93 (572)
.+||||||++..+..++.+|+..||.|.++.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ .+|||+
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ii~ 80 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK--ERPDLVLLDMKIPG-MDGIEILKRMKVIDENIRVII 80 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCTT-CCHHHHHHHHHHHCTTCEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc--cCCCEEEEecCCCC-CCHHHHHHHHHHhCCCCCEEE
Confidence 589999999999999999999999999999999999999988 78999999999999 99999999986 699999
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
+|+..+.....+++. .||++||.||++.++|..+++.+++
T Consensus 81 ~s~~~~~~~~~~~~~-------------~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 81 MTAYGELDMIQESKE-------------LGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EESSCCHHHHHHHHH-------------HTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EEccCchHHHHHHHh-------------cChHhhccCCCCHHHHHHHHHHHhc
Confidence 999999999999998 9999999999999999998877653
No 42
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.78 E-value=8e-19 Score=150.09 Aligned_cols=116 Identities=15% Similarity=0.190 Sum_probs=104.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------CC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------dl 89 (572)
.+++||||||+...+..|+.+|+..||.|..+.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ ++
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~D~~l~~-~~g~~~~~~l~~~~~~~~~ 78 (127)
T 3i42_A 2 SLQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMST--RGYDAVFIDLNLPD-TSGLALVKQLRALPMEKTS 78 (127)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHH--SCCSEEEEESBCSS-SBHHHHHHHHHHSCCSSCC
T ss_pred CcceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHhhhccCCC
Confidence 45799999999999999999999999999999999999999998 78999999999999 99999999886 58
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
|||++|+..+... .+++. .||++||.||++.++|..++++...+.
T Consensus 79 ~ii~~s~~~~~~~-~~~~~-------------~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 79 KFVAVSGFAKNDL-GKEAC-------------ELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp EEEEEECC-CTTC-CHHHH-------------HHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred CEEEEECCcchhH-HHHHH-------------HhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 9999999988777 77888 999999999999999999988876643
No 43
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.78 E-value=8e-19 Score=152.89 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=109.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCC-CCCChHHHHHHhc-----
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEA-MDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTS-NTDGSFKFLETAK----- 87 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~-~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mP-d~mdG~~lLe~Ir----- 87 (572)
.++++||||||++..+..|+.+|+. .||+|..+.++.+|++.+.+. ..||+||+|+.|| + ++|+++++.++
T Consensus 2 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~-~~g~~~~~~l~~~~~~ 79 (140)
T 3lua_A 2 SLDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDL-DSITLIIMDIAFPVE-KEGLEVLSAIRNNSRT 79 (140)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTC-CCCSEEEECSCSSSH-HHHHHHHHHHHHSGGG
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCCC-CcHHHHHHHHHhCccc
Confidence 3568999999999999999999999 899999999999999998762 4799999999999 8 89999999885
Q ss_pred -CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008254 88 -DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN 150 (572)
Q Consensus 88 -dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~ 150 (572)
++|||++|+..+.+.+.+++. .||++||.||++.++|..+++.++++...
T Consensus 80 ~~~~ii~ls~~~~~~~~~~~~~-------------~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (140)
T 3lua_A 80 ANTPVIIATKSDNPGYRHAALK-------------FKVSDYILKPYPTKRLENSVRSVLKICQR 130 (140)
T ss_dssp TTCCEEEEESCCCHHHHHHHHH-------------SCCSEEEESSCCTTHHHHHHHHHHCC---
T ss_pred CCCCEEEEeCCCCHHHHHHHHH-------------cCCCEEEECCCCHHHHHHHHHHHHHhccc
Confidence 699999999999999999999 99999999999999999999988876543
No 44
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.78 E-value=2e-19 Score=156.20 Aligned_cols=118 Identities=18% Similarity=0.168 Sum_probs=108.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----C
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMD-YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----D 88 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~g-y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----d 88 (572)
+..+.+||||||++..+..|+.+|+..| |.|.++.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ +
T Consensus 11 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~ 87 (135)
T 3snk_A 11 PTKRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPAD--TRPGIVILDLGGGD-LLGKPGIVEARALWAT 87 (135)
T ss_dssp --CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTT--CCCSEEEEEEETTG-GGGSTTHHHHHGGGTT
T ss_pred CCCCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhc--cCCCEEEEeCCCCC-chHHHHHHHHHhhCCC
Confidence 4456899999999999999999999999 999999999999999988 78999999999999 99999999987 6
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 89 LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
+|||++|+..+.+...+++. .||++||.||++.++|..+++.++++
T Consensus 88 ~~ii~~s~~~~~~~~~~~~~-------------~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 88 VPLIAVSDELTSEQTRVLVR-------------MNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp CCEEEEESCCCHHHHHHHHH-------------TTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred CcEEEEeCCCCHHHHHHHHH-------------cCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999 99999999999999999988877654
No 45
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.78 E-value=2.6e-18 Score=144.66 Aligned_cols=115 Identities=17% Similarity=0.247 Sum_probs=107.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcEEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTII 93 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPVIi 93 (572)
|++||||||++..+..++.+|+..||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ .+|||+
T Consensus 1 m~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~ii~ 77 (121)
T 1zh2_A 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPD-GDGIEFIRDLRQWSAVPVIV 77 (121)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--HCCSEEEEESEETT-EEHHHHHHHHHTTCCCCEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCC-CcHHHHHHHHHhCCCCcEEE
Confidence 3689999999999999999999999999999999999999987 68999999999999 99999999986 699999
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
+|+..+.....+++. .||++||.||++.++|..+++.++++
T Consensus 78 ~s~~~~~~~~~~~~~-------------~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (121)
T 1zh2_A 78 LSARSEESDKIAALD-------------AGADDYLSKPFGIGELQARLRVALRR 118 (121)
T ss_dssp EESCCSHHHHHHHHH-------------HTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHh-------------cCCCeEEeCCcCHHHHHHHHHHHHHh
Confidence 999999998999998 99999999999999999999888765
No 46
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.78 E-value=2.1e-18 Score=149.69 Aligned_cols=116 Identities=12% Similarity=0.149 Sum_probs=106.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCc
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~g--y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlP 90 (572)
+++||||||++..+..|+.+|+..+ +.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~--~~~dlvilD~~lp~-~~g~~~~~~l~~~~~~~~ 79 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEE--YNPNVVILDIEMPG-MTGLEVLAEIRKKHLNIK 79 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHH--HCCSEEEECSSCSS-SCHHHHHHHHHHTTCSCE
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhh--cCCCEEEEecCCCC-CCHHHHHHHHHHHCCCCc
Confidence 5799999999999999999999876 567799999999999988 78999999999999 99999999996 699
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
||++|+..+.....+++. .||++||.||++.++|..+++.++++.
T Consensus 80 ii~ls~~~~~~~~~~~~~-------------~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 124 (133)
T 3b2n_A 80 VIIVTTFKRPGYFEKAVV-------------NDVDAYVLKERSIEELVETINKVNNGE 124 (133)
T ss_dssp EEEEESCCCHHHHHHHHH-------------TTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred EEEEecCCCHHHHHHHHH-------------cCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 999999999999999999 999999999999999999998887654
No 47
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.78 E-value=1.7e-18 Score=148.11 Aligned_cols=115 Identities=17% Similarity=0.304 Sum_probs=107.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------C
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDY-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------D 88 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy-~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------d 88 (572)
.+++||||||++..+..++.+|+..|| .|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ +
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ 81 (129)
T 1p6q_A 5 EKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQ--NPHHLVISDFNMPK-MDGLGLLQAVRANPATKK 81 (129)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHT--SCCSEEEECSSSCS-SCHHHHHHHHTTCTTSTT
T ss_pred ccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHc--CCCCEEEEeCCCCC-CCHHHHHHHHhcCccccC
Confidence 457999999999999999999999999 88899999999999998 78999999999999 99999999986 5
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 89 LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
+|||++|+..+.....+++. .||++||.||++.++|..+++.+++
T Consensus 82 ~~ii~~s~~~~~~~~~~~~~-------------~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 82 AAFIILTAQGDRALVQKAAA-------------LGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp CEEEECCSCCCHHHHHHHHH-------------HTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHH-------------cCCCEEEECCCCHHHHHHHHHHHHH
Confidence 78999999999999999998 9999999999999999999988765
No 48
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.78 E-value=2.7e-18 Score=150.42 Aligned_cols=116 Identities=20% Similarity=0.259 Sum_probs=109.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIi 93 (572)
.+||||||++..+..|+.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||+
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvllD~~l~~-~~g~~l~~~l~~~~~~~~ii~ 81 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIER--SKPQLIILDLKLPD-MSGEDVLDWINQNDIPTSVII 81 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHH--HCCSEEEECSBCSS-SBHHHHHHHHHHTTCCCEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHh--cCCCEEEEecCCCC-CCHHHHHHHHHhcCCCCCEEE
Confidence 489999999999999999999999999999999999999998 78999999999999 99999999996 689999
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
+|+..+.+...+++. .||++||.||++.++|..+++.++++..
T Consensus 82 ls~~~~~~~~~~~~~-------------~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 124 (137)
T 3cfy_A 82 ATAHGSVDLAVNLIQ-------------KGAEDFLEKPINADRLKTSVALHLKRAK 124 (137)
T ss_dssp EESSCCHHHHHHHHH-------------TTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCcHHHHHHHHH-------------CCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999887654
No 49
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.78 E-value=1.9e-18 Score=154.70 Aligned_cols=116 Identities=18% Similarity=0.265 Sum_probs=108.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCC--CeeEEEEeCCCCCCCChHHHHHHhc----
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPE--NFHVAIVEVTTSNTDGSFKFLETAK---- 87 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~--~pDLVIvDv~mPd~mdG~~lLe~Ir---- 87 (572)
..+++||||||+...+..|+.+|+..||.|. .+.++.+|++.+.+ . .|||||+|+.|++ ++|+++++.++
T Consensus 34 ~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~--~~~~~dliilD~~l~~-~~g~~~~~~lr~~~~ 110 (157)
T 3hzh_A 34 GIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKN--HYPNIDIVTLXITMPK-MDGITCLSNIMEFDK 110 (157)
T ss_dssp TEECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HGGGCCEEEECSSCSS-SCHHHHHHHHHHHCT
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh--cCCCCCEEEEeccCCC-ccHHHHHHHHHhhCC
Confidence 3457999999999999999999999999998 99999999999998 6 7899999999999 99999999997
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 88 DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
++|||++|+..+.+.+.+++. .||++||.||++.++|..+|+.+++
T Consensus 111 ~~~ii~ls~~~~~~~~~~~~~-------------~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 111 NARVIMISALGKEQLVKDCLI-------------KGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp TCCEEEEESCCCHHHHHHHHH-------------TTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred CCcEEEEeccCcHHHHHHHHH-------------cCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 799999999999999999999 9999999999999999998887653
No 50
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.78 E-value=2.7e-18 Score=149.46 Aligned_cols=119 Identities=19% Similarity=0.275 Sum_probs=109.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CC
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dl 89 (572)
|..+++||||||++..+..|+.+|+..||+|..+.++.+|++.+.. ..||+||+|+ |++ ++|+++++.++ ++
T Consensus 1 M~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~-~~~-~~g~~~~~~l~~~~~~~ 76 (142)
T 2qxy_A 1 MSLTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRR--EKIDLVFVDV-FEG-EESLNLIRRIREEFPDT 76 (142)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTT--SCCSEEEEEC-TTT-HHHHHHHHHHHHHCTTC
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc--cCCCEEEEeC-CCC-CcHHHHHHHHHHHCCCC
Confidence 3456899999999999999999999999999999999999999998 7899999999 999 89999999986 69
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
|||++|+..+.+...+++. .||++||.||++.++|..+++.++++..
T Consensus 77 pii~ls~~~~~~~~~~~~~-------------~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 77 KVAVLSAYVDKDLIINSVK-------------AGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp EEEEEESCCCHHHHHHHHH-------------HTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred CEEEEECCCCHHHHHHHHH-------------CCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999999999 9999999999999999999998887543
No 51
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.77 E-value=6.2e-18 Score=146.30 Aligned_cols=120 Identities=19% Similarity=0.264 Sum_probs=109.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHh-CCCE-EEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEA-MDYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~-~gy~-V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---- 87 (572)
+..+++||||||++..+..|+.+|+. .||. |..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.++
T Consensus 5 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~-~~g~~~~~~l~~~~~ 81 (143)
T 3cnb_A 5 VKNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHT--VKPDVVMLDLMMVG-MDGFSICHRIKSTPA 81 (143)
T ss_dssp ----CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHH--TCCSEEEEETTCTT-SCHHHHHHHHHTSTT
T ss_pred ccCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHh--cCCCEEEEecccCC-CcHHHHHHHHHhCcc
Confidence 34578999999999999999999999 8999 8999999999999998 78999999999999 99999999886
Q ss_pred --CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 88 --DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 88 --dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
.+|||++|+..+.....+++. .||++||.||++.++|..++++++++..
T Consensus 82 ~~~~~ii~~s~~~~~~~~~~~~~-------------~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 82 TANIIVIAMTGALTDDNVSRIVA-------------LGAETCFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp TTTSEEEEEESSCCHHHHHHHHH-------------TTCSEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred ccCCcEEEEeCCCCHHHHHHHHh-------------cCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 589999999999999999998 9999999999999999999999887543
No 52
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.77 E-value=5.2e-18 Score=150.24 Aligned_cols=119 Identities=23% Similarity=0.325 Sum_probs=109.2
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCC-eeEEEEeCCCCCCCChHHHHHHhc----C
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPEN-FHVAIVEVTTSNTDGSFKFLETAK----D 88 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~-pDLVIvDv~mPd~mdG~~lLe~Ir----d 88 (572)
|+.+++||||||++..+..|+.+|+. ||.|..+.++.+|++.+.+ .. ||+||+|+.||+ ++|+++++.++ +
T Consensus 1 M~~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~--~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~ 76 (151)
T 3kcn_A 1 MSLNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKK--SDPFSVIMVDMRMPG-MEGTEVIQKARLISPN 76 (151)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHH--SCCCSEEEEESCCSS-SCHHHHHHHHHHHCSS
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHc--CCCCCEEEEeCCCCC-CcHHHHHHHHHhcCCC
Confidence 45678999999999999999999976 8999999999999999988 54 699999999999 99999999986 7
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCC-ccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 89 LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLG-AVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~G-A~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
+|||++|+..+.....+++. .| +++||.||++.++|..+|+.++++..
T Consensus 77 ~~ii~~s~~~~~~~~~~~~~-------------~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 77 SVYLMLTGNQDLTTAMEAVN-------------EGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp CEEEEEECGGGHHHHHHHHH-------------HTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHH-------------cCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 89 99999999999999999999998754
No 53
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.77 E-value=1.8e-18 Score=151.34 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=107.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCC-CCCChHHHHHHhc---CCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTS-NTDGSFKFLETAK---DLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mP-d~mdG~~lLe~Ir---dlPV 91 (572)
++++||||||++..+..|+.+|+..||.|..+.++.+|++.+.+. ..||+||+|+.|| + ++|+++++.++ ++||
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~-~~g~~~~~~l~~~~~~~i 81 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEG-MDGVQTALAIQQISELPV 81 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSS-CCHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCC-CCHHHHHHHHHhCCCCCE
Confidence 457999999999999999999999999999999999999999762 4799999999998 6 89999999987 7999
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN 150 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~ 150 (572)
|++|+..+...+.+++. .||++||.||++.++|..+++.++++...
T Consensus 82 i~ls~~~~~~~~~~~~~-------------~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 127 (140)
T 3h5i_A 82 VFLTAHTEPAVVEKIRS-------------VTAYGYVMKSATEQVLITIVEMALRLYEA 127 (140)
T ss_dssp EEEESSSSCCCCGGGGG-------------SCEEEEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHh-------------CCCcEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 99999988776666666 99999999999999999999999987654
No 54
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.77 E-value=1.4e-17 Score=142.82 Aligned_cols=120 Identities=11% Similarity=0.154 Sum_probs=110.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHhhcCC-----CCeeEEEEeCCCCCCCChHHHHHHhc--
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKP-----ENFHVAIVEVTTSNTDGSFKFLETAK-- 87 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~e~~-----~~pDLVIvDv~mPd~mdG~~lLe~Ir-- 87 (572)
+++||||||+...+..|+.+|+..|| .|..+.++.+|++.+...+ ..||+||+|+.||+ ++|+++++.++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~-~~g~~~~~~l~~~ 80 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPK-KDGREVLAEIKSD 80 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSS-SCHHHHHHHHHHS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCc-ccHHHHHHHHHcC
Confidence 57999999999999999999999998 9999999999999998621 47999999999999 99999999986
Q ss_pred ----CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008254 88 ----DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN 150 (572)
Q Consensus 88 ----dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~ 150 (572)
++|||++|+..+.+.+.+++. .|+++||.||++.++|..++++++++...
T Consensus 81 ~~~~~~pii~ls~~~~~~~~~~~~~-------------~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 134 (140)
T 1k68_A 81 PTLKRIPVVVLSTSINEDDIFHSYD-------------LHVNCYITKSANLSQLFQIVKGIEEFWLS 134 (140)
T ss_dssp TTGGGSCEEEEESCCCHHHHHHHHH-------------TTCSEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred cccccccEEEEecCCcHHHHHHHHH-------------hchhheecCCCCHHHHHHHHHHHHHHHcc
Confidence 589999999999999999998 99999999999999999999999887654
No 55
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.77 E-value=3.5e-18 Score=160.71 Aligned_cols=149 Identities=15% Similarity=0.243 Sum_probs=128.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVI 92 (572)
+++||||||++..+..|+.+|+..| .|..+.++.+|++.+ . .||+||+|+.||+ ++|+++++.++ ++|||
T Consensus 2 m~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~-~---~~dlvllD~~lp~-~~g~~~~~~lr~~~~~~~ii 75 (220)
T 1p2f_A 2 MWKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE-E---AFHVVVLDVMLPD-YSGYEICRMIKETRPETWVI 75 (220)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC-S---CCSEEEEESBCSS-SBHHHHHHHHHHHCTTSEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc-C---CCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCcEE
Confidence 4799999999999999999999988 899999999999987 3 6899999999999 99999999986 79999
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhc----CC------C------cc
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNA----GG------S------AL 156 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~----~~------~------~~ 156 (572)
++|+..+.....+++. .||++||.||++.++|..+++.++++.... .. . ..
T Consensus 76 ~lt~~~~~~~~~~~~~-------------~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (220)
T 1p2f_A 76 LLTLLSDDESVLKGFE-------------AGADDYVTKPFNPEILLARVKRFLEREKKGLYDFGDLKIDATGFTVFLKGK 142 (220)
T ss_dssp EEESCCSHHHHHHHHH-------------HTCSEEEESSCCHHHHHHHHHHHHHHCCCSEEEETTEEEETTTTEEEETTE
T ss_pred EEEcCCCHHHHHHHHH-------------cCCCEEEECCCCHHHHHHHHHHHHccccccCcccccEEEECCCCEEEECCE
Confidence 9999999999999999 999999999999999999999999874200 00 0 01
Q ss_pred cCCCChhHHHHHHHHHhc----chhhhhhccc
Q 008254 157 SDSLKPVKESVVSMLHLK----LENGESKNEK 184 (572)
Q Consensus 157 ~~sLt~RE~eVL~ll~~~----len~e~~~e~ 184 (572)
...||++|.+|+.++..+ +.+++.....
T Consensus 143 ~~~Lt~rE~~vl~~l~~~~~~~~s~~~Ia~~l 174 (220)
T 1p2f_A 143 RIHLPKKEFEILLFLAENAGKVVTREKLLETF 174 (220)
T ss_dssp ECCCCHHHHHHHHHHHHTTTSCEEHHHHHHHH
T ss_pred EEecCHHHHHHHHHHHHCCCceEcHHHHHHHH
Confidence 235999999999999998 6666665543
No 56
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.77 E-value=4.6e-18 Score=147.00 Aligned_cols=117 Identities=18% Similarity=0.283 Sum_probs=108.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCC-----CCCChHHHHHHhc---
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTS-----NTDGSFKFLETAK--- 87 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mP-----d~mdG~~lLe~Ir--- 87 (572)
++++||||||+...+..|+.+|+..||.|..+.++.+|++.+.. ..||+||+|+.|+ + ++|+++++.++
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~~~~~~~~~-~~g~~~~~~l~~~~ 78 (140)
T 2qr3_A 2 SLGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLRE--ENPEVVLLDMNFTSGINNG-NEGLFWLHEIKRQY 78 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHH--SCEEEEEEETTTTC------CCHHHHHHHHHHHC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHc--CCCCEEEEeCCcCCCCCCC-ccHHHHHHHHHhhC
Confidence 46899999999999999999999999999999999999999998 7899999999999 8 89999999986
Q ss_pred -CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 88 -DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 88 -dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
.+|||++|+..+.....+++. .||++||.||++.++|..++++++++.
T Consensus 79 ~~~~ii~ls~~~~~~~~~~~~~-------------~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 79 RDLPVVLFTAYADIDLAVRGIK-------------EGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp TTCCEEEEEEGGGHHHHHHHHH-------------TTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred cCCCEEEEECCCCHHHHHHHHH-------------cCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 799999999999899999998 999999999999999999998888653
No 57
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.77 E-value=1.3e-17 Score=147.73 Aligned_cols=120 Identities=11% Similarity=0.153 Sum_probs=108.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHhhcC-----CCCeeEEEEeCCCCCCCChHHHHHHhc-
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDK-----PENFHVAIVEVTTSNTDGSFKFLETAK- 87 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~e~-----~~~pDLVIvDv~mPd~mdG~~lLe~Ir- 87 (572)
+.++||||||++..+..|+.+|+..|| .|..+.++.+|++.+... ...||+||+|+.||+ ++|+++++.++
T Consensus 7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~-~~g~~l~~~l~~ 85 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPK-KDGREVLAEIKQ 85 (149)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSS-SCHHHHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCC-CcHHHHHHHHHh
Confidence 457999999999999999999999887 888999999999999851 136999999999999 99999999886
Q ss_pred -----CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 88 -----DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 88 -----dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
.+|||++|+..+...+.+++. .||++||.||++.++|..+++.+++...
T Consensus 86 ~~~~~~~piiils~~~~~~~~~~~~~-------------~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 139 (149)
T 1i3c_A 86 NPDLKRIPVVVLTTSHNEDDVIASYE-------------LHVNCYLTKSRNLKDLFKMVQGIESFWL 139 (149)
T ss_dssp CTTTTTSCEEEEESCCCHHHHHHHHH-------------TTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred CcCcCCCeEEEEECCCChHHHHHHHH-------------cCCcEEEECCCCHHHHHHHHHHHHHHHh
Confidence 479999999999999999999 9999999999999999999998877554
No 58
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.77 E-value=3.6e-18 Score=149.54 Aligned_cols=118 Identities=19% Similarity=0.273 Sum_probs=110.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------CC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------dl 89 (572)
++++||||||+...+..|..+|+..||.|..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.++ ++
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~~ 83 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVK--THPHLIITEANMPK-ISGMDLFNSLKKNPQTASI 83 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHH--HCCSEEEEESCCSS-SCHHHHHHHHHTSTTTTTS
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHc--CCCCEEEEcCCCCC-CCHHHHHHHHHcCcccCCC
Confidence 46899999999999999999999999999999999999999998 78999999999999 99999999886 59
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
|||++|+..+.....+++. .||++||.||++.++|..+++.++++..
T Consensus 84 pii~ls~~~~~~~~~~~~~-------------~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 84 PVIALSGRATAKEEAQLLD-------------MGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp CEEEEESSCCHHHHHHHHH-------------HTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHh-------------CCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 9999999999999999999999988654
No 59
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.77 E-value=1.2e-18 Score=149.85 Aligned_cols=117 Identities=17% Similarity=0.165 Sum_probs=106.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
+++||||||++..+..|+.+|+..||.+. .+.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ ++||
T Consensus 1 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~--~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~i 77 (134)
T 3f6c_A 1 SLNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPG-VNGIQVLETLRKRQYSGII 77 (134)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHH--HCCSEEEEETTCSS-SCHHHHHHHHHHTTCCSEE
T ss_pred CeEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHh--cCCCEEEEecCCCC-CChHHHHHHHHhcCCCCeE
Confidence 37999999999999999999999999998 89999999999998 78999999999999 99999999997 6999
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
|++|+..+.....+++. .||++||.||++.++|..+++.++++..
T Consensus 78 i~~s~~~~~~~~~~~~~-------------~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 122 (134)
T 3f6c_A 78 IIVSAKNDHFYGKHCAD-------------AGANGFVSKKEGMNNIIAAIEAAKNGYC 122 (134)
T ss_dssp EEEECC---CTHHHHHH-------------TTCSEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred EEEeCCCChHHHHHHHH-------------hCCCEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 99999999888899998 9999999999999999999998887543
No 60
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.76 E-value=2.3e-19 Score=170.35 Aligned_cols=157 Identities=13% Similarity=0.090 Sum_probs=127.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCEEEE-ECCHHHHHH-HhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-----
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEA-MDYIVST-FYNENEALS-AFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----- 87 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~-~gy~V~t-a~~a~EAL~-~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----- 87 (572)
.+++||||||++..+..|+.+|+. .||.|.. +.++.+++. .+.. ..||+||+|+.||+ ++|+++++.++
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~--~~~dlvllD~~mp~-~~G~~~~~~lr~~~~~ 82 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPES--RSIQMLVIDYSRIS-DDVLTDYSSFKHISCP 82 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGG--GGCCEEEEEGGGCC-HHHHHHHHHHHHHHCT
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhc--cCCCEEEEeCCCCC-CCHHHHHHHHHHhhCC
Confidence 468999999999999999999995 6898864 456666665 4666 78999999999999 99999998875
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhc-------------CC-
Q 008254 88 DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNA-------------GG- 153 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~-------------~~- 153 (572)
++|||++|+..+......++. .||++||.||++.++|..+++.++++.... ..
T Consensus 83 ~~~ii~lt~~~~~~~~~~~~~-------------~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (225)
T 3klo_A 83 DAKEVIINCPQDIEHKLLFKW-------------NNLAGVFYIDDDMDTLIKGMSKILQDEMWLTRKLAQEYILHYRAGN 149 (225)
T ss_dssp TCEEEEEEECTTCCHHHHTTS-------------TTEEEEEETTCCHHHHHHHHHHHHTTCCBCCHHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCcchhHHHHHHH-------------hCCCEEEecCCCHHHHHHHHHHHHCCCEeeCHHHHHHHHHHhhccc
Confidence 699999999988887777777 999999999999999999999988642110 00
Q ss_pred ----CcccCCCChhHHHHHHHHHhcchhhhhhccccccc
Q 008254 154 ----SALSDSLKPVKESVVSMLHLKLENGESKNEKSENT 188 (572)
Q Consensus 154 ----~~~~~sLt~RE~eVL~ll~~~len~e~~~e~s~~~ 188 (572)
......||++|.+|+.++..+..+++...+...+.
T Consensus 150 ~~~~~~~~~~Lt~rE~~vL~~l~~g~s~~~Ia~~l~~s~ 188 (225)
T 3klo_A 150 SVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLFVSE 188 (225)
T ss_dssp CCCCCHHHHTSCHHHHHHHHHHTTTCCHHHHHHHTTCCH
T ss_pred ccccccccccCCHHHHHHHHHHHcCCCHHHHHHHhCCCH
Confidence 01134599999999999999998888776554443
No 61
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.76 E-value=5.5e-18 Score=143.59 Aligned_cols=113 Identities=13% Similarity=0.181 Sum_probs=99.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------CCcE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLPT 91 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------dlPV 91 (572)
.+||||||++..+..++.+|+..||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ .+||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~~i 78 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE--NKPDLILMDIQLPE-ISGLEVTKWLKEDDDLAHIPV 78 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH--HCCSEEEEESBCSS-SBHHHHHHHHHHSTTTTTSCE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHcCccccCCcE
Confidence 489999999999999999999999999999999999999988 68999999999999 99999999886 5899
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
|++|+..+.....+++. .||++||.||++.++|..+++.+++
T Consensus 79 i~~s~~~~~~~~~~~~~-------------~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 79 VAVTAFAMKGDEERIRE-------------GGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp EEEC------CHHHHHH-------------HTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred EEEECCCCHHHHHHHHh-------------CCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 99999988888888888 9999999999999999998887764
No 62
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.76 E-value=7e-18 Score=145.49 Aligned_cols=115 Identities=18% Similarity=0.304 Sum_probs=107.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVI 92 (572)
+.+||||||++..+..|..+|+..||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ .+|||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ii 79 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAET--EKPDLIVLDVMLPK-LDGIEVCKQLRQQKLMFPIL 79 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESSCSS-SCHHHHHHHHHHTTCCCCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhh--cCCCEEEEecCCCC-CCHHHHHHHHHcCCCCCCEE
Confidence 3689999999999999999999999999999999999999988 78999999999999 99999999996 68999
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
++|+..+.....+++. .||++||.||++.++|..+++.++++
T Consensus 80 ~~s~~~~~~~~~~~~~-------------~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 80 MLTAKDEEFDKVLGLE-------------LGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp EEECTTCCCCHHHHHH-------------TTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred EEECCCCHHHHHHHHh-------------CCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 9999988888888888 99999999999999999999888765
No 63
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.76 E-value=1.7e-17 Score=146.97 Aligned_cols=118 Identities=21% Similarity=0.350 Sum_probs=110.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
++++||||||++..+..|+.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~i 82 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKG--TSVQLVISDMRMPE-MGGEVFLEQVAKSYPDIER 82 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTT--SCCSEEEEESSCSS-SCHHHHHHHHHHHCTTSEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEecCCCC-CCHHHHHHHHHHhCCCCcE
Confidence 46899999999999999999999999999999999999999998 78999999999999 99999999996 7999
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCC-ccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLG-AVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~G-A~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
|++|+..+.....+++. .| |++||.||++.++|..+++.++++..
T Consensus 83 i~ls~~~~~~~~~~~~~-------------~g~~~~~l~kP~~~~~L~~~i~~~~~~~~ 128 (154)
T 2rjn_A 83 VVISGYADAQATIDAVN-------------RGKISRFLLKPWEDEDVFKVVEKGLQLAF 128 (154)
T ss_dssp EEEECGGGHHHHHHHHH-------------TTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHh-------------ccchheeeeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999889999988 87 99999999999999999999987654
No 64
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.76 E-value=5.6e-18 Score=147.89 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=102.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------CCc
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLP 90 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------dlP 90 (572)
+++||||||++..+..|+.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~~ 79 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNA--TPPDLVLLDIMMEP-MDGWETLERIKTDPATRDIP 79 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSS-SCHHHHHHHHHHSTTTTTSC
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhc--cCCCEEEEeCCCCC-CCHHHHHHHHHcCcccCCCC
Confidence 4799999999999999999999999999999999999999998 78999999999999 99999999985 589
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
||++|+..+......+.. .|+++||.||++.++|..+++.++++
T Consensus 80 ii~ls~~~~~~~~~~~~~-------------~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 80 VLMLTAKPLTPEEANEYG-------------SYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp EEEEESSCCCHHHHHHTT-------------TTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred EEEEECCCChHHHHHHhh-------------cCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 999999876554444444 77899999999999999999888754
No 65
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.76 E-value=1.2e-17 Score=144.29 Aligned_cols=121 Identities=23% Similarity=0.325 Sum_probs=111.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCC-CCCChHHHHHHhc---CC
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS-NTDGSFKFLETAK---DL 89 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mP-d~mdG~~lLe~Ir---dl 89 (572)
..+++||||||+...+..|+.+|+..||.|. ++.++.+|++.+.. ..||+||+|+.|+ + ++|+++++.++ .+
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~--~~~dlii~d~~~~~~-~~g~~~~~~l~~~~~~ 83 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPD--LRPDIALVDIMLCGA-LDGVETAARLAAGCNL 83 (140)
T ss_dssp -CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH--HCCSEEEEESSCCSS-SCHHHHHHHHHHHSCC
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHh--CCCCEEEEecCCCCC-CCHHHHHHHHHhCCCC
Confidence 3568999999999999999999999999999 69999999999998 7899999999998 8 89999999986 79
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhc
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNA 151 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~ 151 (572)
|||++|+..+.....+++. .||++||.||++.++|..+++.++++....
T Consensus 84 ~ii~ls~~~~~~~~~~~~~-------------~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 132 (140)
T 3cg0_A 84 PIIFITSSQDVETFQRAKR-------------VNPFGYLAKPVAADTLHRSIEMAIHKKKLE 132 (140)
T ss_dssp CEEEEECCCCHHHHHHHHT-------------TCCSEEEEESCCHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEecCCCHHHHHHHHh-------------cCCCEEEeCCCCHHHHHHHHHHHHhccccC
Confidence 9999999999998889888 999999999999999999999999876543
No 66
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.76 E-value=5.1e-18 Score=146.02 Aligned_cols=114 Identities=19% Similarity=0.305 Sum_probs=105.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-----CCc
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLP 90 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~-gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-----dlP 90 (572)
++||||||++..+..++.+|+.. ||.++ ++.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+|
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~--~~~dlvllD~~l~~-~~g~~~~~~l~~~~~~~~~ 79 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEE--KRPDILLLDIIMPH-LDGLAVLERIRAGFEHQPN 79 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEEESCCSS-SCHHHHHHHHHHHCSSCCE
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhc--CCCCEEEEecCCCC-CCHHHHHHHHHhcCCCCCc
Confidence 68999999999999999999987 89876 89999999999988 68999999999999 99999999885 478
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
||++|+..+.+...+++. .||++||.||++.++|..+++.++++
T Consensus 80 ii~ls~~~~~~~~~~~~~-------------~ga~~~l~KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 80 VIMLTAFGQEDVTKKAVE-------------LGASYFILKPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp EEEEEETTCHHHHHHHHH-------------TTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred EEEEecCCCHHHHHHHHH-------------cCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999 99999999999999999999888764
No 67
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.76 E-value=2.8e-17 Score=142.75 Aligned_cols=121 Identities=13% Similarity=0.224 Sum_probs=110.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHhhcCC--------CCeeEEEEeCCCCCCCChHHHHHH
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKP--------ENFHVAIVEVTTSNTDGSFKFLET 85 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~e~~--------~~pDLVIvDv~mPd~mdG~~lLe~ 85 (572)
.+++||||||++..+..|+.+|+..|| .|..+.++.+|++.+.... ..||+||+|+.||+ ++|+++++.
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~-~~g~~~~~~ 83 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPG-TDGREVLQE 83 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSS-SCHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCC-CCHHHHHHH
Confidence 457999999999999999999999998 8999999999999998521 36999999999999 999999999
Q ss_pred hc------CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008254 86 AK------DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN 150 (572)
Q Consensus 86 Ir------dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~ 150 (572)
++ .+|||++|+..+.....+++. .|+++||.||++.++|..+++.++++...
T Consensus 84 l~~~~~~~~~~ii~~t~~~~~~~~~~~~~-------------~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 141 (149)
T 1k66_A 84 IKQDEVLKKIPVVIMTTSSNPKDIEICYS-------------YSISSYIVKPLEIDRLTETVQTFIKYWLD 141 (149)
T ss_dssp HTTSTTGGGSCEEEEESCCCHHHHHHHHH-------------TTCSEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred HHhCcccCCCeEEEEeCCCCHHHHHHHHH-------------CCCCEEEeCCCCHHHHHHHHHHHHHHhhh
Confidence 96 489999999999999999998 99999999999999999999999887654
No 68
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.76 E-value=9.8e-18 Score=164.96 Aligned_cols=119 Identities=16% Similarity=0.217 Sum_probs=110.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCC-CeeEEEEeCCCCCCCChHHHHHHhc------C
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPE-NFHVAIVEVTTSNTDGSFKFLETAK------D 88 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~-~pDLVIvDv~mPd~mdG~~lLe~Ir------d 88 (572)
..++||||||++..+..+...|+..||.|.++.++.+|++.+.. . .||+||+|+.||+ ++|+++++.++ .
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~--~~~~dlvllD~~mP~-~dG~~l~~~lr~~~~~~~ 199 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQ--HPAIRLVLVDYYMPE-IDGISLVRMLRERYSKQQ 199 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--CTTEEEEEECSCCSS-SCHHHHHHHHHHHCCTTT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc--CCCCCEEEEcCCCCC-CCHHHHHHHHHhccCCCC
Confidence 46899999999999999999999999999999999999999987 4 4999999999999 99999999996 4
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008254 89 LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN 150 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~ 150 (572)
+|||++|+..+.....+|+. .||++||.||++.++|..++++++++...
T Consensus 200 ~~ii~~s~~~~~~~~~~a~~-------------~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~ 248 (259)
T 3luf_A 200 LAIIGISVSDKRGLSARYLK-------------QGANDFLNQPFEPEELQCRVSHNLEALEQ 248 (259)
T ss_dssp SEEEEEECSSSSSHHHHHHH-------------TTCSEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred CeEEEEEccCCHHHHHHHHh-------------cChhheEcCCCCHHHHHHHHHHHHHhHhh
Confidence 89999999999999999999 99999999999999999999999887543
No 69
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.76 E-value=7e-18 Score=159.60 Aligned_cols=120 Identities=22% Similarity=0.269 Sum_probs=105.2
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHhhcC-----------CCCeeEEEEeCCCCCCCChHH
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDY-IVSTFYNENEALSAFSDK-----------PENFHVAIVEVTTSNTDGSFK 81 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy-~V~ta~~a~EAL~~L~e~-----------~~~pDLVIvDv~mPd~mdG~~ 81 (572)
...+++|||||||+..+..|+.+|+..|| .|..+.++.+|++.+... +..|||||+|+.||+ ++|++
T Consensus 58 ~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~-~~G~e 136 (206)
T 3mm4_A 58 FLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPE-MDGYE 136 (206)
T ss_dssp TTTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSS-SCHHH
T ss_pred ccCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCC-CCHHH
Confidence 34678999999999999999999999999 899999999999999861 127999999999999 99999
Q ss_pred HHHHhc--------CCcEEEEeCCC-ChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 82 FLETAK--------DLPTIITSNIH-CLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 82 lLe~Ir--------dlPVIiLS~~~-d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
+++.++ ++|||++|++. +.+.+.+++. .||++||.||++ +|..+|+.++++..
T Consensus 137 l~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~-------------~Ga~~~l~KP~~--~L~~~i~~~l~~~~ 198 (206)
T 3mm4_A 137 ATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQ-------------AGMDAFLDKSLN--QLANVIREIESKRH 198 (206)
T ss_dssp HHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHH-------------HTCSEEEETTCT--THHHHHHHHC----
T ss_pred HHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHh-------------CCCCEEEcCcHH--HHHHHHHHHHhhhH
Confidence 999885 58999999998 7788889998 999999999999 89998888877543
No 70
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.76 E-value=4.6e-18 Score=147.65 Aligned_cols=121 Identities=10% Similarity=0.166 Sum_probs=109.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------C
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------D 88 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------d 88 (572)
..+++||||||+...+..|+.+|+..||+|..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.++ .
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~ 81 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKK--GFSGVVLLDIMMPG-MDGWDTIRAILDNSLEQG 81 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT--CCCEEEEEESCCSS-SCHHHHHHHHHHTTCCTT
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHhhcccCC
Confidence 356899999999999999999999999999999999999999998 78999999999999 99999999885 5
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhc
Q 008254 89 LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNA 151 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~ 151 (572)
+|||++|+..+.....+++. .||++||.||++.++|..++++++++.+..
T Consensus 82 ~pii~~s~~~~~~~~~~~~~-------------~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 131 (142)
T 3cg4_A 82 IAIVMLTAKNAPDAKMIGLQ-------------EYVVDYITKPFDNEDLIEKTTFFMGFVRNQ 131 (142)
T ss_dssp EEEEEEECTTCCCCSSTTGG-------------GGEEEEEESSCCHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCHHHHHHHHh-------------cCccEEEeCCCCHHHHHHHHHHHHHHHhhc
Confidence 89999999887666556555 999999999999999999999999876543
No 71
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.75 E-value=3e-18 Score=149.20 Aligned_cols=118 Identities=21% Similarity=0.295 Sum_probs=98.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------CC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------dl 89 (572)
.+++||||||++..+..|+.+|+.. |.|..+.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ ++
T Consensus 2 ~~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~ 77 (140)
T 3n53_A 2 SLKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDH--HHPDLVILDMDIIG-ENSPNLCLKLKRSKGLKNV 77 (140)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHH--HCCSEEEEETTC-------CHHHHHHTSTTCTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCC-CcHHHHHHHHHcCcccCCC
Confidence 3579999999999999999999988 999999999999999998 78999999999999 99999999886 58
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN 150 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~ 150 (572)
|||++|+..+.+...+++. .||++||.||++.++|..+++.++++...
T Consensus 78 ~ii~~s~~~~~~~~~~~~~-------------~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 125 (140)
T 3n53_A 78 PLILLFSSEHKEAIVNGLH-------------SGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
T ss_dssp CEEEEECC----CTTTTTT-------------CCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHh-------------cCCCeeeeCCCCHHHHHHHHHHHHhhHHH
Confidence 9999999887776666666 99999999999999999999999987543
No 72
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.75 E-value=2.8e-17 Score=142.39 Aligned_cols=114 Identities=24% Similarity=0.329 Sum_probs=103.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--------
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-------- 87 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-------- 87 (572)
.+++||||||++..+..++.+|+..||.|.++.++.+|++.+.. .. |+||+|+.||+ ++|+++++.++
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~-dlvllD~~lp~-~~g~~~~~~l~~~~~~~~~ 81 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSH--EH-KVVFMDVCMPG-VENYQIALRIHEKFTKQRH 81 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCT--TC-SEEEEECCSST-TTTTHHHHHHHHHHC-CCS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--cC-CEEEEeCCCCC-CcHHHHHHHHHHhhhhccC
Confidence 46899999999999999999999999999999999999999977 44 99999999999 99999999885
Q ss_pred CC-cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 88 DL-PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 88 dl-PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
.. +||++|+..+.....+++. .||++||.||++.++|..+++.+++
T Consensus 82 ~~~~ii~~s~~~~~~~~~~~~~-------------~ga~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 82 QRPLLVALSGNTDKSTKEKCMS-------------FGLDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp CCCEEEEEESCCSHHHHHHHHH-------------TTCCEEEESSCCHHHHHHHHHHHHS
T ss_pred CCceEEEEeCCCCHHHHHHHHH-------------cCCCeEEECCCCHHHHHHHHHHHhc
Confidence 23 4788999999998999998 9999999999999999998887764
No 73
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.75 E-value=1.3e-17 Score=147.39 Aligned_cols=122 Identities=13% Similarity=0.108 Sum_probs=109.1
Q ss_pred cCCCCccEEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--
Q 008254 12 KDFPKGLRVLLLDQDSSAAAELKFKLEAMDYI--VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-- 87 (572)
Q Consensus 12 ~~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~--V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-- 87 (572)
.....+.+||||||++..+..|+.+|+..|+. |..+.++.+|++.+.+ ..|||||+|+.||+ ++|+++++.++
T Consensus 10 ~~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~-~~g~~~~~~l~~~ 86 (152)
T 3eul_A 10 NPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKA--HLPDVALLDYRMPG-MDGAQVAAAVRSY 86 (152)
T ss_dssp ----CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHH--HCCSEEEEETTCSS-SCHHHHHHHHHHT
T ss_pred CCCCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHhc
Confidence 34456789999999999999999999998854 5589999999999998 78999999999999 99999999997
Q ss_pred --CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 88 --DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 88 --dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
.+|||++|+..+...+.+++. .||++||.||++.++|..+++.++++..
T Consensus 87 ~~~~~ii~~s~~~~~~~~~~~~~-------------~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 87 ELPTRVLLISAHDEPAIVYQALQ-------------QGAAGFLLKDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp TCSCEEEEEESCCCHHHHHHHHH-------------TTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred CCCCeEEEEEccCCHHHHHHHHH-------------cCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence 699999999999999999999 9999999999999999999998887643
No 74
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.75 E-value=2.1e-17 Score=146.56 Aligned_cols=117 Identities=23% Similarity=0.369 Sum_probs=109.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVI 92 (572)
+++||||||++..+..|+.+|+..||.|..+.++.+|+..+.. ..||+||+|+.|++ ++|+++++.++ .+|||
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dliild~~l~~-~~g~~~~~~l~~~~~~~pii 79 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA--DFAGIVISDIRMPG-MDGLALFRKILALDPDLPMI 79 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCT--TCCSEEEEESCCSS-SCHHHHHHHHHHHCTTSCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCCEE
Confidence 5799999999999999999999999999999999999999988 78999999999999 99999999986 79999
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
++|+..+.....+++. .||++||.||++.++|..+++.++++..
T Consensus 80 ~ls~~~~~~~~~~~~~-------------~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 80 LVTGHGDIPMAVQAIQ-------------DGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp EEECGGGHHHHHHHHH-------------TTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHh-------------cCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999899999998 9999999999999999999999987654
No 75
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.75 E-value=2.5e-18 Score=146.23 Aligned_cols=114 Identities=14% Similarity=0.270 Sum_probs=104.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------CCcE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLPT 91 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------dlPV 91 (572)
++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~~i 79 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLAWMLPG-GSGIQFIKHLRRESMTRDIPV 79 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSS--SCCSEEEEESEETT-EEHHHHHHHHHTSTTTTTSCE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc--cCCCEEEEecCCCC-CCHHHHHHHHHhCcccCCCCE
Confidence 689999999999999999999999999999999999999988 78999999999999 99999999985 5899
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
|++|+..+.+...+++. .||++||.||++.++|..+++.++++
T Consensus 80 i~~s~~~~~~~~~~~~~-------------~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 80 VMLTARGEEEDRVRGLE-------------TGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp EEEEETTHHHHHHTTCC-------------CSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHh-------------cCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 99999887776666665 99999999999999999999887764
No 76
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.75 E-value=2.2e-17 Score=141.72 Aligned_cols=117 Identities=17% Similarity=0.292 Sum_probs=100.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------C
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------D 88 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------d 88 (572)
..+++||||||++..+..|+.+|+..||.|..+.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ .
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~ 80 (132)
T 3lte_A 4 KQSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLST--FEPAIMTLDLSMPK-LDGLDVIRSLRQNKVANQ 80 (132)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--TCCSEEEEESCBTT-BCHHHHHHHHHTTTCSSC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCC-CCHHHHHHHHHhcCccCC
Confidence 346799999999999999999999999999999999999999998 78999999999999 99999999996 2
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 89 LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
++||++|... .....+++. .||++||.||++.++|..+|+++....
T Consensus 81 ~~ii~~~~~~-~~~~~~~~~-------------~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 81 PKILVVSGLD-KAKLQQAVT-------------EGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp CEEEEECCSC-SHHHHHHHH-------------HTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred CeEEEEeCCC-hHHHHHHHH-------------hChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 4455555544 457788888 999999999999999999888877654
No 77
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.75 E-value=1.4e-17 Score=162.88 Aligned_cols=118 Identities=17% Similarity=0.306 Sum_probs=111.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++||
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~--~~~dlvl~D~~mp~-~~G~~l~~~ir~~~~~~pi 204 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK--NHIDIVLSDVNMPN-MDGYRLTQRIRQLGLTLPV 204 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHH--SCCSEEEEEESSCS-SCCHHHHHHHHHHHCCSCE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCC-CCHHHHHHHHHhcCCCCcE
Confidence 46899999999999999999999999999999999999999998 78999999999999 99999999997 7999
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
|++|+..+.+...+++. .|+++||.||++.++|..++++++++..
T Consensus 205 I~lt~~~~~~~~~~~~~-------------~G~~~~l~KP~~~~~L~~~l~~~~~~~~ 249 (254)
T 2ayx_A 205 IGVTANALAEEKQRCLE-------------SGMDSCLSKPVTLDVIKQTLTLYAERVR 249 (254)
T ss_dssp EEEESSTTSHHHHHHHH-------------CCCEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHH-------------cCCceEEECCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999 9999999999999999999999887654
No 78
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.75 E-value=3.8e-17 Score=141.78 Aligned_cols=120 Identities=16% Similarity=0.171 Sum_probs=107.6
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHhhcC---CCCeeEEEEeCCCCCCCChHHHHHHhc-
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDK---PENFHVAIVEVTTSNTDGSFKFLETAK- 87 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~e~---~~~pDLVIvDv~mPd~mdG~~lLe~Ir- 87 (572)
+.++++||||||++..+..|+.+|+..|| .|..+.++.+|++.+.+. ...||+||+|+.||+ ++|+++++.++
T Consensus 6 ~~~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~-~~g~~~~~~l~~ 84 (146)
T 3ilh_A 6 TRKIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPG-INGWELIDLFKQ 84 (146)
T ss_dssp -CCEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSS-SCHHHHHHHHHH
T ss_pred cCccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCC-CCHHHHHHHHHH
Confidence 34678999999999999999999999999 899999999999998751 136999999999999 99999998774
Q ss_pred -------CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCC-ccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 88 -------DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLG-AVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 88 -------dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~G-A~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
.+|||++|+..+.....+++. .| |++||.||++.++|..+|+++...
T Consensus 85 ~~~~~~~~~~ii~~t~~~~~~~~~~~~~-------------~g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 85 HFQPMKNKSIVCLLSSSLDPRDQAKAEA-------------SDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp HCGGGTTTCEEEEECSSCCHHHHHHHHH-------------CSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred hhhhccCCCeEEEEeCCCChHHHHHHHh-------------cCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 589999999999999999999 89 999999999999999988877654
No 79
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.75 E-value=6.4e-18 Score=141.93 Aligned_cols=110 Identities=20% Similarity=0.313 Sum_probs=99.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIi 93 (572)
.+||||||++..+..++..|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|||+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ii~ 78 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFS--GNYDLVILDIEMPG-ISGLEVAGEIRKKKKDAKIIL 78 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEECSCCSS-SCHHHHHHHHHHHCTTCCEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEECCCCC-CCHHHHHHHHHccCCCCeEEE
Confidence 589999999999999999999999999999999999999998 78999999999999 99999999986 699999
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVV 145 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vl 145 (572)
+|+..+.. .+++. .||++||.||++.++|..++++++
T Consensus 79 ~s~~~~~~--~~~~~-------------~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 79 LTAYSHYR--SDMSS-------------WAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp EESCGGGG--GCGGG-------------GGSSEEEECCSSTHHHHHHHHHHT
T ss_pred EECCcchH--HHHHh-------------ccccceEECCCCHHHHHHHHHHHh
Confidence 99976543 34444 999999999999999999887654
No 80
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.74 E-value=1.2e-17 Score=155.66 Aligned_cols=117 Identities=16% Similarity=0.178 Sum_probs=108.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPV 91 (572)
...+||||||++..+..|..+|+..||.|. .+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ..||
T Consensus 12 m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~--~~~dlvi~D~~~p~-~~g~~~~~~l~~~~~~pi 88 (205)
T 1s8n_A 12 VPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL--HKPDLVIMDVKMPR-RDGIDAASEIASKRIAPI 88 (205)
T ss_dssp CCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HCCSEEEEESSCSS-SCHHHHHHHHHHTTCSCE
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCC-CChHHHHHHHHhcCCCCE
Confidence 346999999999999999999999999988 99999999999998 78999999999999 99999999996 5699
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
|++|+..+.+...+++. .||++||.||++.++|..+++.++++.
T Consensus 89 i~lt~~~~~~~~~~~~~-------------~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 89 VVLTAFSQRDLVERARD-------------AGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp EEEEEGGGHHHHHTTGG-------------GSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHh-------------cCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999998888777777 999999999999999999999998764
No 81
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.74 E-value=6.4e-18 Score=148.14 Aligned_cols=120 Identities=15% Similarity=0.259 Sum_probs=108.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CC
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMD-YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~g-y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dl 89 (572)
..+.+||||||++..+..|+.+|+..| |.|..+.++.+|+..+.+....|||||+|+.||+ ++|+++++.++ .+
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~ 96 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALD-TAELAAIEKLSRLHPGL 96 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCC-HHHHHHHHHHHHHCTTC
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCC-ccHHHHHHHHHHhCCCC
Confidence 456899999999999999999999998 9999999999998877540026999999999999 99999999996 79
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
|||++|+..+.+.+.+++. .||++||.||++.++|..+|+.++++.
T Consensus 97 ~ii~lt~~~~~~~~~~~~~-------------~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 97 TCLLVTTDASSQTLLDAMR-------------AGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp EEEEEESCCCHHHHHHHHT-------------TTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred cEEEEeCCCCHHHHHHHHH-------------hCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999998 999999999999999999999888753
No 82
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.74 E-value=2.5e-18 Score=172.89 Aligned_cols=114 Identities=12% Similarity=0.230 Sum_probs=103.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCC-CCCChHHHHHHhc---CCcE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS-NTDGSFKFLETAK---DLPT 91 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mP-d~mdG~~lLe~Ir---dlPV 91 (572)
+.+||||||++..+..++.+|+..||.|. ++.++.+||+.+.+ ..|||||+|+.|| + |||+++++.|+ ++||
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~--~~~dlvl~D~~MPd~-mdG~e~~~~ir~~~~~pi 236 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTR--RTPGLVLADIQLADG-SSGIDAVKDILGRMDVPV 236 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--CCCSEEEEESCCTTS-CCTTTTTHHHHHHTTCCE
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHh--CCCCEEEEcCCCCCC-CCHHHHHHHHHhcCCCCE
Confidence 35899999999999999999999999999 99999999999999 7899999999999 8 99999999997 7999
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
|++|++.+ ...+ +++.||++||.||++.++|..+|+.++.+.
T Consensus 237 I~lT~~~~--~~~~-------------~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~ 278 (286)
T 3n0r_A 237 IFITAFPE--RLLT-------------GERPEPTFLITKPFQPETVKAAIGQALFFH 278 (286)
T ss_dssp EEEESCGG--GGCC-------------SSSCCCSSEEESSCCHHHHHHHHHHHHHHS
T ss_pred EEEeCCHH--HHHH-------------HHhCCCcEEEeCCCCHHHHHHHHHHHHHhC
Confidence 99999853 2333 555999999999999999999999998764
No 83
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.74 E-value=1.1e-17 Score=147.17 Aligned_cols=117 Identities=13% Similarity=0.234 Sum_probs=101.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh--CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEA--MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~--~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dl 89 (572)
+++||||||++..+..|..+|.. .||.+. .+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+
T Consensus 2 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~--~~~dlvllD~~lp~-~~g~~l~~~l~~~~~~~ 78 (141)
T 3cu5_A 2 SLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALK--HPPNVLLTDVRMPR-MDGIELVDNILKLYPDC 78 (141)
T ss_dssp CCEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTT--SCCSEEEEESCCSS-SCHHHHHHHHHHHCTTC
T ss_pred cceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCC
Confidence 36999999999999999999973 688777 99999999999988 78999999999999 99999999986 69
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
|||++|+..+.+.+.+++. .||++||.||++.++|..+++.++++..
T Consensus 79 ~ii~ls~~~~~~~~~~~~~-------------~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (141)
T 3cu5_A 79 SVIFMSGYSDKEYLKAAIK-------------FRAIRYVEKPIDPSEIMDALKQSIQTVL 125 (141)
T ss_dssp EEEEECCSTTTCCC-------------------CCCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred cEEEEeCCCcHHHHHHHHh-------------CCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999988777777777 9999999999999999999998887653
No 84
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.74 E-value=2.7e-17 Score=145.55 Aligned_cols=117 Identities=14% Similarity=0.218 Sum_probs=108.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~-~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dl 89 (572)
.+++||||||++..+..|+.+|+. .||.+. .+.++.+|++.+.+ ..||+||+|+.|++ ++|+++++.++ .+
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~--~~~dlii~D~~l~~-~~g~~~~~~l~~~~~~~ 80 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRE--TTPDIVVMDLTLPG-PGGIEATRHIRQWDGAA 80 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHT--TCCSEEEECSCCSS-SCHHHHHHHHHHHCTTC
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhc--CCCCEEEEecCCCC-CCHHHHHHHHHHhCCCC
Confidence 467999999999999999999998 799988 89999999999998 78999999999999 99999999996 69
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
|||++|+..+.....+++. .||++||.||++.++|..+++.++++.
T Consensus 81 ~ii~ls~~~~~~~~~~~~~-------------~g~~~~l~kp~~~~~L~~~i~~~~~~~ 126 (153)
T 3cz5_A 81 RILIFTMHQGSAFALKAFE-------------AGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp CEEEEESCCSHHHHHHHHH-------------TTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred eEEEEECCCCHHHHHHHHH-------------CCCcEEEecCCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999 999999999999999999888877643
No 85
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.73 E-value=1e-17 Score=157.84 Aligned_cols=147 Identities=15% Similarity=0.215 Sum_probs=127.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIi 93 (572)
|+||||||++..+..|+.+|+..||.|..+.++.+|+..+.. ..||+|| ||+ ++|+++++.++ ++|||+
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvi----lp~-~~g~~~~~~lr~~~~~~~ii~ 73 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI--RNYDLVM----VSD-KNALSFVSRIKEKHSSIVVLV 73 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTT--SCCSEEE----ECC-TTHHHHHHHHHHHCTTSEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhc--CCCCEEE----eCC-CCHHHHHHHHHhCCCCCcEEE
Confidence 579999999999999999999999999999999999999998 7899999 899 99999999885 799999
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCC-CHHHHHHHHHHHHHHH--Hh--cCC-------C-----cc
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL-SEDKLRNLWQHVVHKA--FN--AGG-------S-----AL 156 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv-s~eeL~~~~q~Vlrr~--~~--~~~-------~-----~~ 156 (572)
+|+..+...+.+++. .||++||.||+ +.++|..+++.++++. .. ... . ..
T Consensus 74 lt~~~~~~~~~~~~~-------------~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (223)
T 2hqr_A 74 SSDNPTSEEEVHAFE-------------QGADDYIAKPYRSIKALVARIEARLRFWGSNVIEIGDLTISPDEEKIIYKGR 140 (223)
T ss_dssp EESSCCHHHHHHHHH-------------HTCSEEEETTCSCTHHHHHHHHHHTSSCCCCSEEETTEEEETTTTEEEETTE
T ss_pred EECCCCHHHHHHHHH-------------cCCCEEEECCCCCHHHHHHHHHHHhccccCCeEEECCEEEecccCEEEECCE
Confidence 999999999999999 99999999999 9999999999988764 10 000 0 01
Q ss_pred cCCCChhHHHHHHHHHhc----chhhhhhccc
Q 008254 157 SDSLKPVKESVVSMLHLK----LENGESKNEK 184 (572)
Q Consensus 157 ~~sLt~RE~eVL~ll~~~----len~e~~~e~ 184 (572)
...||++|.+++.++..+ +.+++.....
T Consensus 141 ~~~Lt~rE~~vL~~l~~~~~~~~s~~~Ia~~l 172 (223)
T 2hqr_A 141 EVEVKGKPFEVLTHLARHRDQIVSKEQLLDAI 172 (223)
T ss_dssp EECCCSTTTHHHHHHHHTCSEEEEHHHHHHHH
T ss_pred EEecCHHHHHHHHHHHhCCCCcCCHHHHHHHh
Confidence 125999999999999999 7777665543
No 86
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.73 E-value=1.3e-17 Score=173.68 Aligned_cols=115 Identities=27% Similarity=0.356 Sum_probs=110.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEEE
Q 008254 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIIT 94 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIiL 94 (572)
+||||||++.++..|+.+|+..||.|.++.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|||++
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~--~~~DlvllDi~mP~-~dG~ell~~lr~~~~~~pvI~l 78 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKE--LFFPVIVLDVWMPD-GDGVNFIDFIKENSPDSVVIVI 78 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--BCCSEEEEESEETT-EETTTHHHHHHHHCTTCEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCeEEEE
Confidence 79999999999999999999999999999999999999998 78999999999999 99999999996 7999999
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
|++.+.+.+.+|+. .||++||.||++.++|..++++++.+..
T Consensus 79 T~~~~~~~~~~a~~-------------~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 79 TGHGSVDTAVKAIK-------------KGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp ECSSCCHHHHHHHH-------------HTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred eCCCCHHHHHHHHh-------------cCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999 9999999999999999999999988654
No 87
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.73 E-value=7.8e-17 Score=140.42 Aligned_cols=115 Identities=23% Similarity=0.325 Sum_probs=105.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIi 93 (572)
.+||||||++..+..++.+|+.. |.|.++.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ .+|+|+
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~lp~-~~g~~~~~~l~~~~~~~~ii~ 77 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEE--EWVQVIICDQRMPG-RTGVDFLTEVRERWPETVRII 77 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHH--SCEEEEEEESCCSS-SCHHHHHHHHHHHCTTSEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhc--CCCCEEEEeCCCCC-CcHHHHHHHHHHhCCCCcEEE
Confidence 37999999999999999999876 999999999999999998 78999999999999 99999999986 689999
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
+|+..+.....+++. ..||++||.||++.++|..+++.++++.
T Consensus 78 ~s~~~~~~~~~~~~~------------~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 78 ITGYTDSASMMAAIN------------DAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp EESCTTCHHHHHHHH------------HTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCChHHHHHHHH------------hhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 999998888888886 1469999999999999999999888754
No 88
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.72 E-value=2.1e-17 Score=141.57 Aligned_cols=115 Identities=16% Similarity=0.215 Sum_probs=102.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
.+++||||||++..+..|+.+|+..++.|..+.++++|+..+.. . ||+||+|+.||+ ++|+++++.++ .+||
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~i 77 (135)
T 3eqz_A 2 SLNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN--K-QDIIILDLMMPD-MDGIEVIRHLAEHKSPASL 77 (135)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC--T-TEEEEEECCTTT-THHHHHHHHHHHTTCCCEE
T ss_pred CcceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc--C-CCEEEEeCCCCC-CCHHHHHHHHHhCCCCCCE
Confidence 35799999999999999999999998899999999999998888 6 999999999999 99999999996 6999
Q ss_pred EEEeCCCCh-----HHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCL-----STMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 92 IiLS~~~d~-----~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
|++|+..+. +.+.+++. .||++||.||++.++|..+++++..+
T Consensus 78 i~~s~~~~~~~~~~~~~~~~~~-------------~g~~~~l~KP~~~~~l~~~l~~~~~~ 125 (135)
T 3eqz_A 78 ILISGYDSGVLHSAETLALSCG-------------LNVINTFTKPINTEVLTCFLTSLSNR 125 (135)
T ss_dssp EEEESSCHHHHHHHHHHHHHTT-------------CEEEEEEESSCCHHHHHHHHHHHSCC
T ss_pred EEEEeccchhHHHHHHHHHHcC-------------CCcceeeCCCCCHHHHHHHHHHHHhh
Confidence 999998774 44555555 99999999999999999988877654
No 89
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.72 E-value=1.1e-16 Score=139.16 Aligned_cols=119 Identities=13% Similarity=0.196 Sum_probs=104.9
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHhhcCC----CCeeEEEEeCCCCCCCChHHHHHHhc
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKP----ENFHVAIVEVTTSNTDGSFKFLETAK 87 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~e~~----~~pDLVIvDv~mPd~mdG~~lLe~Ir 87 (572)
|.+.++||||||++..+..|+.+|+..|| .|..+.++.+|++.+.... ..||+||+|+.||+ ++|+++++.++
T Consensus 4 m~~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~-~~g~~~~~~l~ 82 (143)
T 2qvg_A 4 AADKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPK-MNGIEFLKELR 82 (143)
T ss_dssp ---CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTT-SCHHHHHHHHT
T ss_pred ccCCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCC-CCHHHHHHHHH
Confidence 34568999999999999999999999988 9999999999999998511 46999999999999 99999999986
Q ss_pred ------CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 88 ------DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 88 ------dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
.+|||++|+..+.....+++. .||++||.||++.++|..++.+...
T Consensus 83 ~~~~~~~~~ii~ls~~~~~~~~~~~~~-------------~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 83 DDSSFTDIEVFVLTAAYTSKDKLAFES-------------LNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp TSGGGTTCEEEEEESCCCHHHHHHHTT-------------TTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred cCccccCCcEEEEeCCCCHHHHHHHHh-------------cCCCeEEECCCCHHHHHHHHHHHHH
Confidence 589999999999888888888 9999999999999999998776443
No 90
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.72 E-value=3.8e-17 Score=137.84 Aligned_cols=112 Identities=16% Similarity=0.268 Sum_probs=103.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCC-CCCChHHHHHHhc------CCc
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTS-NTDGSFKFLETAK------DLP 90 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mP-d~mdG~~lLe~Ir------dlP 90 (572)
++||||||++..+..|+.+|+..||+|..+.++.+|++.+.. ..||+||+|+.|+ + ++|+++++.++ ++|
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvi~d~~~~~~-~~g~~~~~~l~~~~~~~~~~ 82 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRR--DRPDLVVLAVDLSAG-QNGYLICGKLKKDDDLKNVP 82 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHH--HCCSEEEEESBCGGG-CBHHHHHHHHHHSTTTTTSC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHh--cCCCEEEEeCCCCCC-CCHHHHHHHHhcCccccCCC
Confidence 699999999999999999999999999999999999999998 7899999999999 8 89999999885 589
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
||++ +..+.....+++. .|+++||.||++.++|..+++++++
T Consensus 83 ii~~-~~~~~~~~~~~~~-------------~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 83 IVII-GNPDGFAQHRKLK-------------AHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp EEEE-ECGGGHHHHHHST-------------TCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEEE-ecCCchhHHHHHH-------------hCcchheeCCCCHHHHHHHHHHHHc
Confidence 9999 8777787778777 9999999999999999998887764
No 91
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.71 E-value=2.8e-17 Score=169.64 Aligned_cols=117 Identities=21% Similarity=0.382 Sum_probs=107.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVI 92 (572)
+++||||||++..+..|+.+|+..||+|.++.++.+|++.+.+ ..|||||+|+.||+ ++|+++++.++ ++|||
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dlvllD~~mp~-~~G~~~~~~lr~~~~~~pii 81 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFES--EQPDLVICDLRMPQ-IDGLELIRRIRQTASETPII 81 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHH--SCCSEEEECCCSSS-SCTHHHHHHHHHTTCCCCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhh--CCCCEEEEcCCCCC-CCHHHHHHHHHhhCCCCcEE
Confidence 5799999999999999999999999999999999999999998 78999999999999 99999999997 79999
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCC-CHHHHHHHHHHHHHHHH
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL-SEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv-s~eeL~~~~q~Vlrr~~ 149 (572)
++|+..+.+.+.+|++ .||++||.||+ +.++|..+++.++++..
T Consensus 82 ~lt~~~~~~~~~~a~~-------------~ga~~yl~KP~~~~~~l~~~i~~~~~~~~ 126 (394)
T 3eq2_A 82 VLSGAGVMSDAVEALR-------------LGAADYLIKPLEDLAVLEHSVRRALDRAY 126 (394)
T ss_dssp EC---CHHHHHHHHHH-------------HTCSEECCSSCSCTHHHHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHh-------------cChhhEEECCCChHHHHHHHHHHHHhhhh
Confidence 9999999999999999 99999999999 68999999998887643
No 92
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.71 E-value=2e-16 Score=137.80 Aligned_cols=118 Identities=11% Similarity=0.245 Sum_probs=103.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCEE-EEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYIV-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~-gy~V-~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dl 89 (572)
.+++||||||++..+..|..+|+.. +|.+ ..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ..
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~ 84 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQH--NKVDAIFLDINIPS-LDGVLLAQNISQFAHKP 84 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHH--CCCSEEEECSSCSS-SCHHHHHHHHTTSTTCC
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh--CCCCEEEEecCCCC-CCHHHHHHHHHccCCCc
Confidence 3579999999999999999999986 8885 489999999999998 78999999999999 99999999997 46
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhc
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNA 151 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~ 151 (572)
+||++|+..+ ...+++. .||++||.||++.++|..++++++++....
T Consensus 85 ~ii~~s~~~~--~~~~~~~-------------~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 131 (143)
T 2qv0_A 85 FIVFITAWKE--HAVEAFE-------------LEAFDYILKPYQESRIINMLQKLTTAWEQQ 131 (143)
T ss_dssp EEEEEESCCT--THHHHHH-------------TTCSEEEESSCCHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEeCCHH--HHHHHHh-------------CCcceEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 7889998743 5667777 999999999999999999999998876543
No 93
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.70 E-value=1.1e-16 Score=167.47 Aligned_cols=115 Identities=18% Similarity=0.315 Sum_probs=109.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIi 93 (572)
++||||||++..+..|+.+|+..||.|.++.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|||+
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~--~~~DlvllD~~mp~-~dG~ell~~lr~~~~~~pvIv 77 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSE--KHFNVVLLDLLLPD-VNGLEILKWIKERSPETEVIV 77 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHH--SCCSEEEEESBCSS-SBHHHHHHHHHHHCTTSEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCcEEE
Confidence 589999999999999999999999999999999999999998 78999999999999 99999999996 799999
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
+|++.+.+.+.++++ .||++||.||++.++|..+++++++..
T Consensus 78 lT~~~~~~~~~~a~~-------------~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 78 ITGHGTIKTAVEAMK-------------MGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp EEETTCHHHHHHHHT-------------TTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHh-------------cCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999988754
No 94
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.70 E-value=7.2e-17 Score=142.66 Aligned_cols=118 Identities=16% Similarity=0.121 Sum_probs=96.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CC-EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAM-DY-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~-gy-~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dl 89 (572)
++++||||||++..+..|+.+|+.. || .|..+.++.+|++.+... ..||+||+|+.|++ ++|+++++.++ ++
T Consensus 2 ~~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~ 79 (154)
T 2qsj_A 2 SLTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEAD-NTVDLILLDVNLPD-AEAIDGLVRLKRFDPSN 79 (154)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTT-CCCSEEEECC-------CHHHHHHHHHHCTTS
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhcc-CCCCEEEEeCCCCC-CchHHHHHHHHHhCCCC
Confidence 3579999999999999999999987 88 688999999999999862 46999999999999 99999999996 69
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
|||++|+..+.....+++. .||++||.||++.++|..+++.++++.
T Consensus 80 ~ii~ls~~~~~~~~~~~~~-------------~g~~~~l~kp~~~~~L~~~l~~~~~~~ 125 (154)
T 2qsj_A 80 AVALISGETDHELIRAALE-------------AGADGFIPKSADPQVLIHAVSLILEGE 125 (154)
T ss_dssp EEEEC-----CHHHHHHHH-------------TTCCBBCCTTSCHHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCHHHHHHHHH-------------ccCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 9999999998899999998 999999999999999999988887653
No 95
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.70 E-value=3.3e-16 Score=133.98 Aligned_cols=116 Identities=12% Similarity=0.261 Sum_probs=103.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCC-CeeEEEEeCCCCCCCChHHHHHHhc----CCc
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPE-NFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~-~pDLVIvDv~mPd~mdG~~lLe~Ir----dlP 90 (572)
++++||||||++..+..|+.+|+..||.|..+.++.+|++.+.. . .||+||+|+.|++.++|+++++.++ .+|
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ 81 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKS--GAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMP 81 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT--TCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHc--CCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCC
Confidence 46899999999999999999999999999999999999999998 6 8999999999993169999999986 699
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
||++|+..+.....+++. .| +||.||++.++|..+++++++..
T Consensus 82 ii~~s~~~~~~~~~~~~~-------------~~--~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 82 IVYISGHAALEWASNGVP-------------DS--IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp EEEEESSCCTTHHHHSCT-------------TC--EEEESSCCHHHHHHHHHHHHHTT
T ss_pred EEEEeCCccHHHHHhhcC-------------Cc--ceEeCCCCHHHHHHHHHHHHhcC
Confidence 999999988777666554 55 79999999999999998887653
No 96
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.70 E-value=1.5e-16 Score=166.54 Aligned_cols=115 Identities=21% Similarity=0.291 Sum_probs=108.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------CCcE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLPT 91 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------dlPV 91 (572)
.+||||||++..+..|+.+|+..||.|.++.++.+|++.+.. ..|||||+|+.||+ ++|+++++.++ ++||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~--~~~dlvllD~~mp~-~~G~~~~~~l~~~~~~~~~pi 78 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAAR--DLPDIILLDVMMPG-MDGFTVCRKLKDDPTTRHIPV 78 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCSS-SCHHHHHHHHHHSTTTTTSCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCC-CCHHHHHHHHhcCcccCCCCE
Confidence 589999999999999999999999999999999999999988 78999999999999 99999999986 5899
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
|++|+..+.....+++. .||++||.||++.++|..+++.+++..
T Consensus 79 i~lt~~~~~~~~~~a~~-------------~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 79 VLITALDGRGDRIQGLE-------------SGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp EEEECSSCHHHHHHHHH-------------HTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHH-------------cCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999888754
No 97
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.69 E-value=3.3e-16 Score=135.79 Aligned_cols=115 Identities=16% Similarity=0.256 Sum_probs=105.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CC
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dl 89 (572)
...+.+||||||+...+..|+.+|+..||.|..+.++.+|+..+.. ..||+|| ||+ ++|+++++.++ .+
T Consensus 15 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvi----~~~-~~g~~~~~~l~~~~~~~ 87 (137)
T 2pln_A 15 PRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI--RNYDLVM----VSD-KNALSFVSRIKEKHSSI 87 (137)
T ss_dssp CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH--SCCSEEE----ECS-TTHHHHHHHHHHHSTTS
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHc--CCCCEEE----EcC-ccHHHHHHHHHhcCCCc
Confidence 3467899999999999999999999999999999999999999998 7899999 899 99999999885 78
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCC-CHHHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL-SEDKLRNLWQHVVHKA 148 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv-s~eeL~~~~q~Vlrr~ 148 (572)
|||++|+..+.....+++. .||++||.||+ +.++|..+++.++++.
T Consensus 88 ~ii~ls~~~~~~~~~~~~~-------------~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 88 VVLVSSDNPTSEEEVHAFE-------------QGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp EEEEEESSCCHHHHHHHHH-------------TTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred cEEEEeCCCCHHHHHHHHH-------------cCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999 99999999999 9999999988877643
No 98
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.69 E-value=1e-16 Score=140.67 Aligned_cols=112 Identities=17% Similarity=0.207 Sum_probs=94.4
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHhhcCCC-CeeEEEEeCCCCCCCChHHHHHHhc---
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPE-NFHVAIVEVTTSNTDGSFKFLETAK--- 87 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~-gy~V~-ta~~a~EAL~~L~e~~~-~pDLVIvDv~mPd~mdG~~lLe~Ir--- 87 (572)
.+...+||||||++..+..|+.+|+.. ||.++ .+.++.+|++.+.. . .||+||+|+.||+ ++|+++++.++
T Consensus 10 ~~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~~dlvilD~~l~~-~~g~~~~~~lr~~~ 86 (145)
T 3kyj_B 10 HGSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAA--QPNVDLILLDIEMPV-MDGMEFLRHAKLKT 86 (145)
T ss_dssp -CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH--CTTCCEEEECTTSCC-CTTCHHHHHHHHHC
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhc--CCCCCEEEEeCCCCC-CCHHHHHHHHHhcC
Confidence 345679999999999999999999998 89865 99999999999998 6 7999999999999 99999999987
Q ss_pred CCcEEEEeC--CCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHH
Q 008254 88 DLPTIITSN--IHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLW 141 (572)
Q Consensus 88 dlPVIiLS~--~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~ 141 (572)
..|+|+++. ..+...+.+++. .||++||.||++.++|...+
T Consensus 87 ~~~iiil~~~~~~~~~~~~~~~~-------------~ga~~~l~KP~~~~~l~~~i 129 (145)
T 3kyj_B 87 RAKICMLSSVAVSGSPHAARARE-------------LGADGVVAKPSGTVSHDLEE 129 (145)
T ss_dssp CCEEC-CBSSCSTTSSHHHHHHH-------------TTCSCCCBCCCSCC------
T ss_pred CCCeEEEEEeccCChHHHHHHHh-------------CCCCEEEeCCCCHHHHHHHH
Confidence 689999987 566677788888 99999999999977666544
No 99
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.68 E-value=3.2e-16 Score=141.75 Aligned_cols=116 Identities=18% Similarity=0.203 Sum_probs=97.8
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCC-CE-EEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---C
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMD-YI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---D 88 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~g-y~-V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---d 88 (572)
+..+++||||||++..+..|+.+|+..+ +. |..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .
T Consensus 22 ~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlvilD~~l~~-~~g~~l~~~lr~~~~ 98 (164)
T 3t8y_A 22 TDRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIE--LKPDVITMDIEMPN-LNGIEALKLIMKKAP 98 (164)
T ss_dssp --CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEECSSCSS-SCHHHHHHHHHHHSC
T ss_pred ccCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhcc--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCC
Confidence 3457899999999999999999999874 44 4489999999999998 78999999999999 99999999997 6
Q ss_pred CcEEEEeCCCChH--HHHHHHHHHHhhhhccccccCCccEEEeCCCC---------HHHHHHHHHHHH
Q 008254 89 LPTIITSNIHCLS--TMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLS---------EDKLRNLWQHVV 145 (572)
Q Consensus 89 lPVIiLS~~~d~~--~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs---------~eeL~~~~q~Vl 145 (572)
+|||++|+..+.. .+.+++. .||++||.||++ .++|..+++.++
T Consensus 99 ~~ii~~s~~~~~~~~~~~~~~~-------------~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~ 153 (164)
T 3t8y_A 99 TRVIMVSSLTEEGAAITIEALR-------------NGAVDFITKPHGSISLTFRQVAPELLEKIRQAM 153 (164)
T ss_dssp CEEEEEESSCCTTCHHHHHHHH-------------TTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHT
T ss_pred ceEEEEecCCccchHHHHHHHH-------------cCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHh
Confidence 8999999977643 6778888 999999999999 455555444444
No 100
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.67 E-value=1.9e-16 Score=138.17 Aligned_cols=114 Identities=17% Similarity=0.198 Sum_probs=98.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---------
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--------- 87 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--------- 87 (572)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~--~~~dlvllD~~lp~-~~g~~~~~~l~~~~~~~~~~ 86 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN--RQFDVIIMDIQMPV-MDGLEAVSEIRNYERTHNTK 86 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHH--SCCSEEEECTTCCS-SCHHHHHHHHHHHHHHHTCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CcHHHHHHHHHhhhhhcCCC
Confidence 3699999999999999999999999999999999999999998 78999999999999 99999999885
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 88 DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
.+|||++|+....... ...||++||.||++.++|..+++.++.+..
T Consensus 87 ~~~ii~~s~~~~~~~~----------------~~~g~~~~l~KP~~~~~L~~~i~~~~~~~~ 132 (140)
T 3c97_A 87 RASIIAITADTIDDDR----------------PGAELDEYVSKPLNPNQLRDVVLTCHSEGA 132 (140)
T ss_dssp CCCCEEEESSCCSCCC----------------CCSSCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred ceEEEEEeCccchhHH----------------HhCChhheEeCCCCHHHHHHHHHHHhCCCC
Confidence 4789999986543221 138999999999999999999988876543
No 101
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.67 E-value=2.4e-16 Score=130.33 Aligned_cols=109 Identities=18% Similarity=0.200 Sum_probs=100.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------CCcE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLPT 91 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------dlPV 91 (572)
.+||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+.+++ ++|+++++.++ .+||
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~--~~~dlii~d~~~~~-~~~~~~~~~l~~~~~~~~~~i 78 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDL--LQPIVILMAWPPPD-QSCLLLLQHLREHQADPHPPL 78 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH--HCCSEEEEECSTTC-CTHHHHHHHHHHTCCCSSCCC
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHh--cCCCEEEEecCCCC-CCHHHHHHHHHhccccCCCCE
Confidence 589999999999999999999999999999999999999998 78999999999999 99999999885 5899
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVV 145 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vl 145 (572)
|++|+..+.. .++. .|+++||.||++.++|..++++++
T Consensus 79 i~~~~~~~~~---~~~~-------------~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 79 VLFLGEPPVD---PLLT-------------AQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEEESSCCSS---HHHH-------------HHCSEECSSCSTTHHHHHHHHTTC
T ss_pred EEEeCCCCch---hhhh-------------cCHHHhccCCCCHHHHHHHHHHHh
Confidence 9999987766 7777 999999999999999999877654
No 102
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.66 E-value=3.8e-16 Score=157.48 Aligned_cols=114 Identities=16% Similarity=0.175 Sum_probs=106.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------CC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEA-MDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~-~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------dl 89 (572)
..+||||||++.++..|+.+|.. .||.|.++.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~-~~G~~~~~~l~~~~~~~~~ 94 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQ--IKPTVILQDLVMPG-VDGLTLLAAYRGNPATRDI 94 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHH--HCCSEEEEESBCSS-SBHHHHHHHHTTSTTTTTS
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHhcCcccCCC
Confidence 35799999999999999999974 59999999999999999998 78999999999999 99999999996 48
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
|||++|+..+.....+++. .||++||.||++.++|..+++.+++
T Consensus 95 ~ii~~s~~~~~~~~~~a~~-------------~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 95 PIIVLSTKEEPTVKSAAFA-------------AGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp CEEEEESSCCHHHHHHHHH-------------TTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred cEEEEeCCCCHHHHHHHHh-------------cChheEeeccCCHHHHHHHHHHHHH
Confidence 9999999999999999999 9999999999999999999987754
No 103
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.66 E-value=4.8e-18 Score=143.20 Aligned_cols=115 Identities=25% Similarity=0.332 Sum_probs=103.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVI 92 (572)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~ii 79 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS--KTPDVLLSDIRMPG-MDGLALLKQIKQRHPMLPVI 79 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSS--CCCSCEEECSCSSH-HHHCSTHHHHHHHCTTSCCC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEeeecCC-CCHHHHHHHHHhhCCCCCEE
Confidence 4689999999999999999999999999999999999999988 78999999999999 89999998886 69999
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
++|+..+.....+++. .||++||.||++.++|..+++.++++
T Consensus 80 ~~s~~~~~~~~~~~~~-------------~g~~~~l~kp~~~~~l~~~i~~~~~~ 121 (124)
T 1dc7_A 80 IMTAHSDLDAAVSAYQ-------------QGAFDYLPKPFDIDEAVALVERAISH 121 (124)
T ss_dssp CBCCSTTSTTTTSSCT-------------TCCCCCBCSSCCHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHh-------------cCcceEeeCCCCHHHHHHHHHHHHHh
Confidence 9999887665555555 99999999999999999999888764
No 104
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.65 E-value=3.4e-16 Score=163.02 Aligned_cols=118 Identities=19% Similarity=0.289 Sum_probs=101.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEA-MDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~-~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
+++||||||++..+..++.+|+. .+|.|.++.++.+|++.+... ..|||||+|+.||+ ++|+++++.++ .++|
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~-~~~DlvllDi~mP~-~dG~ell~~l~~~~~~~~i 80 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC-GHVDIAICDLQMSG-MDGLAFLRHASLSGKVHSV 80 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH-SCEEEEEECSSCSS-SCHHHHHHHHHHHTCEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC-CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCceE
Confidence 57999999999999999999998 588999999999999999861 27999999999999 99999999997 4667
Q ss_pred EEEeCCCCh-----HHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCL-----STMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 92 IiLS~~~d~-----~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
|++|+..+. ..+.+|+. .||++||.||++.++|..+++.++.+..
T Consensus 81 i~~s~~~~~~~~~~~~~~~a~~-------------~ga~~yl~KP~~~~~L~~~i~~~~~~~~ 130 (400)
T 3sy8_A 81 ILSSEVDPILRQATISMIECLG-------------LNFLGDLGKPFSLERITALLTRYNARRQ 130 (400)
T ss_dssp EESCCCCGGGHHHHHHHHHTTT-------------CEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred EEEcCchHHHHHHHHHHHHHcC-------------CeeccCcCCCcCHHHHHHHHHHHHHhhh
Confidence 777776665 44445555 9999999999999999999998887643
No 105
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.63 E-value=5.1e-16 Score=143.70 Aligned_cols=112 Identities=13% Similarity=0.188 Sum_probs=101.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
.+++||||||++..+..|+.+|+..||.|..+.++.+|+ . ..||+||+|+.||+ ++|+ +++.++ ++||
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~--~~~dlvl~D~~mp~-~~g~-l~~~~~~~~~~~~i 82 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----D--VPVDVVFTSIFQNR-HHDE-IAALLAAGTPRTTL 82 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----S--SCCSEEEEECCSST-HHHH-HHHHHHHSCTTCEE
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----C--CCCCEEEEeCCCCc-cchH-HHHHHhccCCCCCE
Confidence 357999999999999999999999999999888887766 3 57999999999999 8998 777774 6999
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
|++|++.+.+.+.+++. .||++||.||++.++|..+++.++++.
T Consensus 83 i~lt~~~~~~~~~~a~~-------------~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 83 VALVEYESPAVLSQIIE-------------LECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp EEEECCCSHHHHHHHHH-------------HTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred EEEEcCCChHHHHHHHH-------------cCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999888764
No 106
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.61 E-value=1.5e-15 Score=131.73 Aligned_cols=116 Identities=18% Similarity=0.242 Sum_probs=96.8
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----C
Q 008254 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----D 88 (572)
Q Consensus 13 ~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----d 88 (572)
..+.+.+||||||++..+..|+.+|+..||.|..+.++.+|++.+... ..||+||+|+.||+ ++|+++++.++ +
T Consensus 11 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~-~~~dlvilD~~l~~-~~g~~~~~~l~~~~~~ 88 (138)
T 2b4a_A 11 HHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQL-STCDLLIVSDQLVD-LSIFSLLDIVKEQTKQ 88 (138)
T ss_dssp ---CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGG-GSCSEEEEETTCTT-SCHHHHHHHHTTSSSC
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCC
Confidence 345678999999999999999999999999999999999999988761 26999999999999 99999999997 6
Q ss_pred CcEEEEe-CCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 89 LPTIITS-NIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 89 lPVIiLS-~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
+|||++| +..+... . .+ . +++||.||++.++|..++++++++
T Consensus 89 ~~ii~ls~~~~~~~~-~-------------~~--~-~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 89 PSVLILTTGRHELIE-S-------------SE--H-NLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp CEEEEEESCC--CCC-C-------------SS--S-CEEEEESSCCHHHHHHHHHHTCCC
T ss_pred CCEEEEECCCCCHHH-H-------------HH--H-HHheeeCCCCHHHHHHHHHHHHHh
Confidence 9999999 7655322 1 12 3 999999999999999988776543
No 107
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.57 E-value=5.8e-15 Score=145.20 Aligned_cols=101 Identities=14% Similarity=0.221 Sum_probs=87.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTII 93 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~-gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIi 93 (572)
+.+||||||++.++..|...|+.. +|.|..+ ++.+++..+.. ..||+||+|+.||+ ++|++++++++ ++|||+
T Consensus 4 ~~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~-~~~~~~~~~~~--~~~dlvllD~~mP~-~~G~~~~~~lr~~~~pvi~ 79 (259)
T 3luf_A 4 KQKILIVEDSMTIRRMLIQAIAQQTGLEIDAF-DTLEGARHCQG--DEYVVALVDLTLPD-APSGEAVKVLLERGLPVVI 79 (259)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHHCCEEEEE-SSTGGGTTCCT--TTEEEEEEESCBTT-BTTSHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCeEEEEe-ChHHHHHHhhc--CCCcEEEEeCCCCC-CCHHHHHHHHHhCCCCEEE
Confidence 468999999999999999999765 7777644 55566666666 68999999999999 99999999997 799999
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSE 134 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~ 134 (572)
+|+..+.+...+|++ .||++||.||...
T Consensus 80 lt~~~~~~~~~~a~~-------------~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 80 LTADISEDKREAWLE-------------AGVLDYVMKDSRH 107 (259)
T ss_dssp EECC-CHHHHHHHHH-------------TTCCEEEECSSHH
T ss_pred EEccCCHHHHHHHHH-------------CCCcEEEeCCchh
Confidence 999999999999999 9999999999744
No 108
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.57 E-value=2.1e-14 Score=148.85 Aligned_cols=115 Identities=19% Similarity=0.277 Sum_probs=100.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCc
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLP 90 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~-gy~-V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlP 90 (572)
++++||||||+...+..|+.+|+.. +|+ |.++.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ .+|
T Consensus 2 ~~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~--~~pDlVllDi~mp~-~dGlell~~l~~~~p~p 78 (349)
T 1a2o_A 2 SKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKK--FNPDVLTLDVEMPR-MDGLDFLEKLMRLRPMP 78 (349)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEEECCCSS-SCHHHHHHHHHHSSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhc--cCCCEEEEECCCCC-CCHHHHHHHHHhcCCCc
Confidence 3589999999999999999999986 898 5599999999999998 78999999999999 99999999997 599
Q ss_pred EEEEeCCCCh--HHHHHHHHHHHhhhhccccccCCccEEEeCCCCH---------HHHHHHHHHHHH
Q 008254 91 TIITSNIHCL--STMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSE---------DKLRNLWQHVVH 146 (572)
Q Consensus 91 VIiLS~~~d~--~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~---------eeL~~~~q~Vlr 146 (572)
||++|+..+. +...+++. .||++||.||++. ++|...++.+.+
T Consensus 79 VIvlS~~~~~~~~~~~~al~-------------~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~ 132 (349)
T 1a2o_A 79 VVMVSSLTGKGSEVTLRALE-------------LGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAAR 132 (349)
T ss_dssp EEEEECCTHHHHHHHHHHHH-------------HTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHh-------------CCceEEEECCCCccchhHHHHHHHHHHHHHHHHh
Confidence 9999998775 44778888 9999999999983 667666666554
No 109
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.46 E-value=7.4e-14 Score=158.08 Aligned_cols=117 Identities=9% Similarity=0.112 Sum_probs=105.6
Q ss_pred cEEEEEeCCH-HH-------HHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCC-CeeEEEEeCCCCC---CCChHHHHHH
Q 008254 18 LRVLLLDQDS-SA-------AAELKFKLEAMDYIVSTFYNENEALSAFSDKPE-NFHVAIVEVTTSN---TDGSFKFLET 85 (572)
Q Consensus 18 lRVLVVDDD~-~~-------~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~-~pDLVIvDv~mPd---~mdG~~lLe~ 85 (572)
|+|||||||. .+ ++.|+..|+..||+|..+.++++|+..+.+ . .+|+||+|+.||+ .++|++++++
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~--~~~~d~vilDi~lp~~~~~~~G~~ll~~ 78 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSS--NEAIDCLMFSYQMEHPDEHQNVRQLIGK 78 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT--TCCCSEEEEECCCCSHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc--CCCCcEEEEeCCCCcccccccHHHHHHH
Confidence 4899999999 88 999999999999999999999999999998 5 5999999999996 1489999999
Q ss_pred hc----CCcEEEEeCCCC-hHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHH-HHHHHHHHHHHHH
Q 008254 86 AK----DLPTIITSNIHC-LSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDK-LRNLWQHVVHKAF 149 (572)
Q Consensus 86 Ir----dlPVIiLS~~~d-~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~ee-L~~~~q~Vlrr~~ 149 (572)
|| ++||||+|+..+ .+....++. .||+|||.||++.++ |..+|+.++++..
T Consensus 79 iR~~~~~iPIi~lTa~~~~~~d~~~~l~-------------~gaddyi~kpf~~~efl~~ri~a~~rr~~ 135 (755)
T 2vyc_A 79 LHERQQNVPVFLLGDREKALAAMDRDLL-------------ELVDEFAWILEDTADFIAGRAVAAMTRYR 135 (755)
T ss_dssp HHHHSTTCCEEEEECHHHHHHTCSHHHH-------------HHCSEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCEEEEecCCcchhhccHhHh-------------hcCCceEeCCCCCHHHHHHHHHHHHHHhh
Confidence 97 699999999876 667777787 999999999999999 8899999998753
No 110
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.82 E-value=7.7e-08 Score=100.58 Aligned_cols=114 Identities=18% Similarity=0.294 Sum_probs=98.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------CCc
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLP 90 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------dlP 90 (572)
..+|++|||+...+..+...|.. .+.+....+..+++. ... ..||++++|+.||+ |+|+++++.++ .+|
T Consensus 152 ~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~~~--~~~dlil~D~~mp~-~dG~~~~~~ir~~~~~~~~p 226 (459)
T 1w25_A 152 GGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-SAG--GPVDLVIVNAAAKN-FDGLRFTAALRSEERTRQLP 226 (459)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-HHH--SSCSEEEEETTCSS-SCHHHHHHHHHTSGGGTTCC
T ss_pred CCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-hcc--CCCCEEEEecCCCC-CcHHHHHHHHHhCccccCCc
Confidence 45899999999988888888865 467778888888863 345 57999999999999 99999999886 699
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
+|++|+..+.....+++. .|+++|+.||++.+++...+..++++.
T Consensus 227 ii~lt~~~~~~~~~~~l~-------------~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 227 VLAMVDPDDRGRMVKALE-------------IGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp EEEEECTTCHHHHHHHHH-------------TTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCchHHHHHHHh-------------ccccccccCCCCHHHHHHHHHHHHHHH
Confidence 999999999998889998 999999999999999998887777653
No 111
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.78 E-value=2.4e-09 Score=100.58 Aligned_cols=88 Identities=15% Similarity=0.244 Sum_probs=74.3
Q ss_pred CEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHhhhhcc
Q 008254 42 YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIHCLSTMMKCIAIMVMNQLFD 117 (572)
Q Consensus 42 y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIiLS~~~d~~~~~kai~~~~~~~~~~ 117 (572)
+.|..+.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ ..++++++.....+.+.+++.
T Consensus 6 ~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~~p~-~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~--------- 73 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKE--LKPDIVTMDITMPE-MNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIK--------- 73 (237)
T ss_dssp EEEECCCSSSTTHHHHHH--HCCSCEEEECCSTT-SSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHH---------
T ss_pred EEEEECCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHH---------
Confidence 456678899999999998 78999999999999 99999999975 466777777777888888888
Q ss_pred ccccCCccEEEeCC--CCHHHHHHHHHHHH
Q 008254 118 NNFQLGAVEFLRKP--LSEDKLRNLWQHVV 145 (572)
Q Consensus 118 ~~~~~GA~dYL~KP--vs~eeL~~~~q~Vl 145 (572)
.||++||.|| ++.++|...+...+
T Consensus 74 ----~Ga~~~l~kp~~~~~~~l~~~i~~~~ 99 (237)
T 3cwo_X 74 ----AGAKDFIVNTAAVENPSLITQIAQTF 99 (237)
T ss_dssp ----TTCCEEEESHHHHHCTHHHHHHHHHH
T ss_pred ----CCHHheEeCCcccChHHHHHHHHHHh
Confidence 9999999999 67777777665544
No 112
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.04 E-value=0.0029 Score=61.38 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=70.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEE
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIIT 94 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiL 94 (572)
..+.+||||||+...+..|..+|+..|++|..+.+ ... ..+|++|+|..+++ ..+. ..+|.+
T Consensus 9 l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~-------~~~--~~~~~ii~d~~~~~-~~~~--------~~~i~~ 70 (254)
T 2ayx_A 9 LSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG-------QEP--TPEDVLITDEVVSK-KWQG--------RAVVTF 70 (254)
T ss_dssp TTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS-------CCC--CTTCEEEEESSCSC-CCCS--------SEEEEE
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC-------CCC--CcCcEEEEcCCCcc-cccc--------ceEEEE
Confidence 45789999999999999999999999999988875 122 57899999999998 4431 235666
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHH
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVV 145 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vl 145 (572)
+..... ...+.+...++.+|+...+|...+..++
T Consensus 71 ~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 104 (254)
T 2ayx_A 71 CRRHIG-----------------IPLEKAPGEWVHSVAAPHELPALLARIY 104 (254)
T ss_dssp CSSCCC-----------------SCCTTSTTEEEECSSCCSHHHHHHHHHH
T ss_pred ecccCC-----------------CcccccCCceeccccchHHHHHHHHHHh
Confidence 654311 1112455688999998888777555444
No 113
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=96.54 E-value=0.003 Score=71.70 Aligned_cols=101 Identities=13% Similarity=0.171 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEEEeCCCChHHHH
Q 008254 29 AAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIHCLSTMM 104 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIiLS~~~d~~~~~ 104 (572)
....|...|+..||+|..+.+.++|+..++++ .++++||+|+.++ +.+++++|+ ++||++++...+...+.
T Consensus 18 ~i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~-~~i~avIld~d~~----~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~ 92 (715)
T 3n75_A 18 PIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDKY----NLELCEEISKMNENLPLYAFANTYSTLDVS 92 (715)
T ss_dssp HHHHHHHHHHHTTCEEECCSSHHHHHHHHHHC-TTEEEEEEEHHHH----HHHHHHHHHHHCTTCEEEEECCTTCCCCGG
T ss_pred HHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhC-CCceEEEEecccc----HHHHHHHHHHhCCCCCEEEEecCCcccccc
Confidence 45567788999999999999999999999984 5699999999765 567888886 89999999875432221
Q ss_pred HHHHHHHhhhhccccccCCccEEEeCCCCH-HHHHHHHHHHHHH
Q 008254 105 KCIAIMVMNQLFDNNFQLGAVEFLRKPLSE-DKLRNLWQHVVHK 147 (572)
Q Consensus 105 kai~~~~~~~~~~~~~~~GA~dYL~KPvs~-eeL~~~~q~Vlrr 147 (572)
-.. ..++++|+.+..+. +.+...|..++++
T Consensus 93 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (715)
T 3n75_A 93 LND-------------LRLQISFFEYALGAAEDIANKIKQTTDE 123 (715)
T ss_dssp GTT-------------SCCEEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred hhh-------------hhccCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 111 25789999987754 4455556555554
No 114
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=96.12 E-value=0.05 Score=48.07 Aligned_cols=100 Identities=12% Similarity=0.121 Sum_probs=78.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc------CCcE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLPT 91 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir------dlPV 91 (572)
..||+|-.|-.+.-.++.++....|.++...... .+ -.-|+|+|+..+-. +.+. ..-+
T Consensus 13 ~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~------~e--~~AdlIfCEYlLLP--------e~ifS~k~~~~~dl 76 (121)
T 3q7r_A 13 KHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYK------QE--LSADLVVCEYSLLP--------REIRSPKSLEGSFV 76 (121)
T ss_dssp EEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCC------CC--TTEEEEEEEGGGSC--------TTCCCCTTCCSCEE
T ss_pred cEEEEEecCchhhHHHHHhcCCcceeEEeccccC------Cc--ccceeEEEeeecCh--------HHhcCCCCCCcccE
Confidence 4799999999999999999988899888654311 12 45699999986643 1222 4667
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
|++-..-+.+.+++.++ .||. ||+.|+...-|..+|+..+++
T Consensus 77 iVLfD~F~EEa~v~vLd-------------~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 77 LVLLDFFDEETSVDLLD-------------RGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp EEEESSCCHHHHHHHHH-------------TTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred EEEehhhchHHHHHHHh-------------CCce-eEeccCcHHHHHHHHHHHHhc
Confidence 88878788899999999 9999 999999999999988777664
No 115
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=94.74 E-value=0.35 Score=44.67 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=81.8
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCCh-HHHHHHhc
Q 008254 16 KGLRVLLL----DQDSSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK 87 (572)
Q Consensus 16 ~~lRVLVV----DDD~~~~~~L~~lL~~~gy~V~---ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG-~~lLe~Ir 87 (572)
...+|++. |-+..=...+..+|+..||+|. .....++.++.+.+ ..+|+|.+-..+...+.. -++++.++
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~--~~~diV~lS~~~~~~~~~~~~~i~~L~ 94 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQ--EDVDVIGVSILNGAHLHLMKRLMAKLR 94 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHH--TTCSEEEEEESSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh--cCCCEEEEEeechhhHHHHHHHHHHHH
Confidence 35688888 8888888999999999999998 34578899999998 899999988776541211 22344443
Q ss_pred -----CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHH
Q 008254 88 -----DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAF 149 (572)
Q Consensus 88 -----dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~ 149 (572)
+++|+ +-+..-......+-. .|++.++..-.+.++....++..+....
T Consensus 95 ~~g~~~i~v~-vGG~~~~~~~~~l~~-------------~G~d~v~~~~~~~~~~~~~~~~~~~~~~ 147 (161)
T 2yxb_A 95 ELGADDIPVV-LGGTIPIPDLEPLRS-------------LGIREIFLPGTSLGEIIEKVRKLAEEKR 147 (161)
T ss_dssp HTTCTTSCEE-EEECCCHHHHHHHHH-------------TTCCEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCEEE-EeCCCchhcHHHHHH-------------CCCcEEECCCCCHHHHHHHHHHHHHHhh
Confidence 45554 455444333333334 9999877766677777777777776543
No 116
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=93.18 E-value=0.34 Score=44.74 Aligned_cols=77 Identities=9% Similarity=0.184 Sum_probs=58.8
Q ss_pred CHHHHHHHhhcCCCCeeEEEEeC-CCCCCCCh--HHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccC
Q 008254 49 NENEALSAFSDKPENFHVAIVEV-TTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQL 122 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~pDLVIvDv-~mPd~mdG--~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~ 122 (572)
+..+.++.+... ...++++.++ .++. ++| .+++++++ ++|||.+++....+...+++. .
T Consensus 131 ~~~~~i~~~~~~-~~~~vli~~~~~~g~-~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~-------------~ 195 (237)
T 3cwo_X 131 LLRDWVVEVEKR-GAGEILLTSIDRDGT-KSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFL-------------A 195 (237)
T ss_dssp EHHHHHHHHHHH-TCSEEEEEETTTTTC-CSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHH-------------H
T ss_pred CHHHHHHHHhhc-CCCeEEEEecCCCCc-cccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHH-------------c
Confidence 556766666651 3446889987 4444 666 45677764 899999999999999999998 9
Q ss_pred CccEEE------eCCCCHHHHHHH
Q 008254 123 GAVEFL------RKPLSEDKLRNL 140 (572)
Q Consensus 123 GA~dYL------~KPvs~eeL~~~ 140 (572)
||++++ .+|++..+++..
T Consensus 196 G~~~~~vg~a~~~~~~~~~~~~~~ 219 (237)
T 3cwo_X 196 GADAALAASVFHFREIDVRELKEY 219 (237)
T ss_dssp TCSEEEESHHHHTTSSCHHHHHHH
T ss_pred CcHHHhhhHHHHcCCCCHHHHHHH
Confidence 999995 678988888763
No 117
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=91.39 E-value=1.1 Score=43.73 Aligned_cols=97 Identities=11% Similarity=0.132 Sum_probs=70.1
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCC------CCCCCChHHHHHH
Q 008254 17 GLRVLLLDQ----DSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVT------TSNTDGSFKFLET 85 (572)
Q Consensus 17 ~lRVLVVDD----D~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~------mPd~mdG~~lLe~ 85 (572)
|..++++|- ++.....+...+++.|..+. .+.+.++|..+... .+|+|.+..+ ... ..++++++.
T Consensus 101 Gad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~-~~~~~li~~ 176 (229)
T 3q58_A 101 GADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQK---GIEFIGTTLSGYTGPITPV-EPDLAMVTQ 176 (229)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSSSCCCS-SCCHHHHHH
T ss_pred CCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhC---CCCEEEecCccCCCCCcCC-CCCHHHHHH
Confidence 345556553 33445555566666677655 77888998887765 6899875332 123 346888888
Q ss_pred hc--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 86 AK--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 86 Ir--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
++ ++|||.-.+..+.+.+.+++. +||+++++=
T Consensus 177 l~~~~ipvIA~GGI~t~~d~~~~~~-------------~GadgV~VG 210 (229)
T 3q58_A 177 LSHAGCRVIAEGRYNTPALAANAIE-------------HGAWAVTVG 210 (229)
T ss_dssp HHTTTCCEEEESSCCSHHHHHHHHH-------------TTCSEEEEC
T ss_pred HHHcCCCEEEECCCCCHHHHHHHHH-------------cCCCEEEEc
Confidence 76 799999999999999999999 999999874
No 118
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=89.98 E-value=3.2 Score=37.07 Aligned_cols=104 Identities=6% Similarity=-0.026 Sum_probs=69.1
Q ss_pred eCCHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCC-hHHHHHHhc-----CCcEEEE
Q 008254 24 DQDSSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK-----DLPTIIT 94 (572)
Q Consensus 24 DDD~~~~~~L~~lL~~~gy~V~---ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~md-G~~lLe~Ir-----dlPVIiL 94 (572)
|-+..-...+..+|+..||+|. ...+.++.++.+.+ ..+|+|.+-..+...+. .-++++.++ +++|+ +
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~--~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~-v 90 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIE--TKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLY-V 90 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHH--HTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEE-E
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh--cCCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEE-E
Confidence 4455667788899999999987 56789999999998 78999998887754111 112333332 45554 4
Q ss_pred eCC-----CChHH-HHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHH
Q 008254 95 SNI-----HCLST-MMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQH 143 (572)
Q Consensus 95 S~~-----~d~~~-~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~ 143 (572)
-+. .+... ...+.+ .|++.|+.--.+..++...+..
T Consensus 91 GG~~~~~~~~~~~~~~~~~~-------------~G~d~~~~~g~~~~~~~~~l~~ 132 (137)
T 1ccw_A 91 GGNIVVGKQHWPDVEKRFKD-------------MGYDRVYAPGTPPEVGIADLKK 132 (137)
T ss_dssp EESCSSSSCCHHHHHHHHHH-------------TTCSEECCTTCCHHHHHHHHHH
T ss_pred ECCCcCchHhhhhhHHHHHH-------------CCCCEEECCCCCHHHHHHHHHH
Confidence 443 22222 222334 9999999877777777765544
No 119
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=89.38 E-value=2.1 Score=41.84 Aligned_cols=97 Identities=9% Similarity=0.120 Sum_probs=69.0
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCC-C-----CCCCChHHHHHH
Q 008254 17 GLRVLLLDQ----DSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVT-T-----SNTDGSFKFLET 85 (572)
Q Consensus 17 ~lRVLVVDD----D~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~-m-----Pd~mdG~~lLe~ 85 (572)
|..+++++- ++.....+...+++.|..+. .+.+.++|..+... .+|+|.+..+ . .. ..+++++++
T Consensus 101 Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~-~~~~~~i~~ 176 (232)
T 3igs_A 101 GAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCSSVDDGLACQRL---GADIIGTTMSGYTTPDTPE-EPDLPLVKA 176 (232)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHT---TCSEEECTTTTSSSSSCCS-SCCHHHHHH
T ss_pred CCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhC---CCCEEEEcCccCCCCCCCC-CCCHHHHHH
Confidence 344555553 34445555666666677655 77888888877665 6898875332 1 22 346788887
Q ss_pred hc--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 86 AK--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 86 Ir--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
++ ++|||.-.+..+.+.+.+++. +||+++++=
T Consensus 177 l~~~~ipvIA~GGI~t~~d~~~~~~-------------~GadgV~VG 210 (232)
T 3igs_A 177 LHDAGCRVIAEGRYNSPALAAEAIR-------------YGAWAVTVG 210 (232)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHHHH-------------TTCSEEEEC
T ss_pred HHhcCCcEEEECCCCCHHHHHHHHH-------------cCCCEEEEe
Confidence 76 799999999999999999999 999999874
No 120
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=88.33 E-value=1.8 Score=44.49 Aligned_cols=104 Identities=16% Similarity=0.118 Sum_probs=77.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC---CCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh-cCCcE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAM---DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA-KDLPT 91 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~---gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I-rdlPV 91 (572)
..+++.|+|.|..+.+.|...|.+. .|+|..|++.+.+.+.+++ ..+|++|+|-.+.. . . ..+ ....+
T Consensus 20 ~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~--~~~dilli~e~~~~-~-~----~~~~~~~~v 91 (373)
T 3fkq_A 20 MKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKE--YRIDVLIAEEDFNI-D-K----SEFKRNCGL 91 (373)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHH--HTCSEEEEETTCCC-C-G----GGGCSSCEE
T ss_pred ceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhc--CCCCEEEEcchhhh-h-h----hhhcccCcE
Confidence 3589999999999999999999753 6799999999999999998 78999999987765 2 1 222 35677
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
++++.....+. ..-...+.|=-+.++|...+..++.
T Consensus 92 ~~l~~~~~~~~-------------------~~~~~~i~kyq~~~~i~~ei~~~~~ 127 (373)
T 3fkq_A 92 AYFTGTPGIEL-------------------IKDEIAICKYQRVDVIFKQILGVYS 127 (373)
T ss_dssp EEEESCTTCCE-------------------ETTEEEEETTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCc-------------------CCCCceeeccCCHHHHHHHHHHHHh
Confidence 77776432110 1223467888888888777666653
No 121
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=83.43 E-value=3.4 Score=41.99 Aligned_cols=125 Identities=8% Similarity=0.024 Sum_probs=86.6
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC-CCCCCCChHHHHHHhc----C
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV-TTSNTDGSFKFLETAK----D 88 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv-~mPd~mdG~~lLe~Ir----d 88 (572)
+...+.|-++-.++.+...+..+|...-|.++.+.+.++.++.+..+++.+|++|+.. ... -..++..+. -
T Consensus 6 ~~~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~~~~----~~~~~~~L~~~g~l 81 (289)
T 1r8j_A 6 VLSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAANPS----FRAVVQQLCFEGVV 81 (289)
T ss_dssp CCCCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETTSTT----HHHHHHHHHHTTCC
T ss_pred cccceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeCCCc----cHHHHHHHHHcCcc
Confidence 4556789999999999999999998889999999999999999988888999999987 322 344444443 6
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHhcCC
Q 008254 89 LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG 153 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~~~~ 153 (572)
+|+|++-.... ..-.+. .+ .+..-..+.-+..-..++|-..|.+++.+......
T Consensus 82 LP~vil~~~~~-~~~~~~---------~~-~~~yh~aEv~l~~~ql~~l~~~Id~AI~~Fl~l~~ 135 (289)
T 1r8j_A 82 VPAIVVGDRDS-EDPDEP---------AK-EQLYHSAELHLGIHQLEQLPYQVDAALAEFLRLAP 135 (289)
T ss_dssp CCEEEESCCC-------C---------CS-SCSSBTTCEEECTTCGGGHHHHHHHHHHHHHHHCS
T ss_pred ccEEEeccCcc-ccCCCC---------cc-ceeccHHHHcCCHhHHHHHHHHHHHHHHHHHccCC
Confidence 99998865421 000000 00 01122333344455668888888888888765443
No 122
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=82.45 E-value=7.2 Score=39.42 Aligned_cols=100 Identities=11% Similarity=0.037 Sum_probs=66.3
Q ss_pred HHHHHHHHHhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCCC-CC---CChHHHHHHhc---CCcEEEEeCCCCh
Q 008254 30 AAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTS-NT---DGSFKFLETAK---DLPTIITSNIHCL 100 (572)
Q Consensus 30 ~~~L~~lL~~~gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~mP-d~---mdG~~lLe~Ir---dlPVIiLS~~~d~ 100 (572)
.-...+.|.+.||.|. ++.+...|-++. + -.+++| +.+..| +. ..-+++++.++ ++|||+=.+....
T Consensus 124 tv~aa~~L~~~Gf~Vlpy~~dd~~~akrl~-~--~G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~eGGI~TP 199 (265)
T 1wv2_A 124 TLKAAEQLVKDGFDVMVYTSDDPIIARQLA-E--IGCIAV-MPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTA 199 (265)
T ss_dssp HHHHHHHHHTTTCEEEEEECSCHHHHHHHH-H--SCCSEE-EECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSH
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-H--hCCCEE-EeCCccCCCCCCcCCHHHHHHHHhcCCCCEEEeCCCCCH
Confidence 3344555667799987 455555555544 4 467777 443333 10 12367888776 8999998888999
Q ss_pred HHHHHHHHHHHhhhhccccccCCccEEEeC-----CCCHHHHHHHHHHHHH
Q 008254 101 STMMKCIAIMVMNQLFDNNFQLGAVEFLRK-----PLSEDKLRNLWQHVVH 146 (572)
Q Consensus 101 ~~~~kai~~~~~~~~~~~~~~~GA~dYL~K-----Pvs~eeL~~~~q~Vlr 146 (572)
+.+..+++ +||++.++- --++..+...+..++.
T Consensus 200 sDAa~Ame-------------LGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 237 (265)
T 1wv2_A 200 SDAAIAME-------------LGCEAVLMNTAIAHAKDPVMMAEAMKHAIV 237 (265)
T ss_dssp HHHHHHHH-------------HTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------------cCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 99999999 999999864 3445555555555544
No 123
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=81.04 E-value=16 Score=35.79 Aligned_cols=82 Identities=16% Similarity=0.039 Sum_probs=58.7
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChH-HHHHHhc
Q 008254 16 KGLRVLLL----DQDSSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSF-KFLETAK 87 (572)
Q Consensus 16 ~~lRVLVV----DDD~~~~~~L~~lL~~~gy~V~---ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~-~lLe~Ir 87 (572)
.+-+||+. |-+..-...+..+|+..||+|. .--..++.++.+.+ ..+|+|.+-..+...+..+ ++++.++
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~--~~~d~V~lS~l~~~~~~~~~~~i~~l~ 199 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQK--EKPIMLTGTALMTTTMYAFKEVNDMLL 199 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHH--HCCSEEEEECCCTTTTTHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEEeeccCCHHHHHHHHHHHH
Confidence 35578887 6777888899999999999986 34577888888888 7899999988776534443 4556664
Q ss_pred ----CCcEEEEeCCCC
Q 008254 88 ----DLPTIITSNIHC 99 (572)
Q Consensus 88 ----dlPVIiLS~~~d 99 (572)
+++|++--....
T Consensus 200 ~~~~~~~v~vGG~~~~ 215 (258)
T 2i2x_B 200 ENGIKIPFACGGGAVN 215 (258)
T ss_dssp TTTCCCCEEEESTTCC
T ss_pred hcCCCCcEEEECccCC
Confidence 466655433333
No 124
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=80.67 E-value=4.3 Score=33.59 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=38.3
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCCHHHHhhhCCCCCCHHHHHHhhhhhh
Q 008254 332 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYR 382 (572)
Q Consensus 332 r~~Wt~eLh~~Fv~av~~lG~~~a~Pk~il~lM~v~glt~~~v~SHLQkyr 382 (572)
+-.||.|=+.+|++||++.| ++ =+.|-+.|+ |=|..+++.|-++|-
T Consensus 18 ~~~WT~eEd~~Ll~~v~~~G-~~--W~~IA~~v~--~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 18 GREWTEQETLLLLEALEMYK-DD--WNKVSEHVG--SRTQDECILHFLRLP 63 (79)
T ss_dssp SCCCCHHHHHHHHHHHHHSS-SC--HHHHHHHHS--SCCHHHHHHHHTTSC
T ss_pred CCCcCHHHHHHHHHHHHHhC-CC--HHHHHHHcC--CCCHHHHHHHHHHhc
Confidence 56899999999999999999 32 367777764 789999999988774
No 125
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=80.44 E-value=19 Score=34.05 Aligned_cols=87 Identities=10% Similarity=0.122 Sum_probs=59.9
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEE
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVI 92 (572)
|+...+|+++-..+...+.++.++...+.++. ...+.++++...++....+|+||+- ..-.++|+..-++|||
T Consensus 1 m~~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIISR------Ggta~~lr~~~~iPVV 74 (196)
T 2q5c_A 1 MSLSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISR------GATSDYIKKSVSIPSI 74 (196)
T ss_dssp -CCCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEE------HHHHHHHHTTCSSCEE
T ss_pred CCCCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEEC------ChHHHHHHHhCCCCEE
Confidence 45567999999999999999998887666665 5567787887655411678999973 2335566665578888
Q ss_pred EEeCCCChHHHHHHHH
Q 008254 93 ITSNIHCLSTMMKCIA 108 (572)
Q Consensus 93 iLS~~~d~~~~~kai~ 108 (572)
-+... .-.+++++.
T Consensus 75 ~I~~s--~~Dil~al~ 88 (196)
T 2q5c_A 75 SIKVT--RFDTMRAVY 88 (196)
T ss_dssp EECCC--HHHHHHHHH
T ss_pred EEcCC--HhHHHHHHH
Confidence 77542 345555555
No 126
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=79.76 E-value=2.1 Score=36.23 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=37.6
Q ss_pred CceecCHHHHHHHHHHHHHhCCCCCCCHHHHhhhC-----------------CCCCCHHHHHHhhhhhhhhhcc
Q 008254 331 MKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMK-----------------VEGLTRHNVASHLQKYRMHRRH 387 (572)
Q Consensus 331 ~r~~Wt~eLh~~Fv~av~~lG~~~a~Pk~il~lM~-----------------v~glt~~~v~SHLQkyr~~~~~ 387 (572)
..-+|.++|-..|++|+...-.. -+=|.+|..-| -.-=|+.+|.||||--+....+
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~-g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPC-GRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSS-SCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred cCCcCCHHHHHHHHHHHHHcCCC-CccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence 34589999999999999988521 12223332111 1345899999999988866554
No 127
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=79.15 E-value=18 Score=36.19 Aligned_cols=95 Identities=18% Similarity=0.142 Sum_probs=62.9
Q ss_pred EEEEeC--CHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCC-CChHHHHHHhc-----CCc
Q 008254 20 VLLLDQ--DSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK-----DLP 90 (572)
Q Consensus 20 VLVVDD--D~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~-mdG~~lLe~Ir-----dlP 90 (572)
|+|+.. +......+....+..|..+. .+.+.+|+..++.. .+|+|-+.-.-... .-+++.+.++. ++|
T Consensus 139 VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~---Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~~~~p 215 (272)
T 3qja_A 139 LLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKA---GAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVI 215 (272)
T ss_dssp EEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---TCSEEEEESBCTTTCCBCTTHHHHHGGGSCTTSE
T ss_pred EEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC---CCCEEEECCCcccccccCHHHHHHHHHhCcccCE
Confidence 555322 33445555666667787654 78898887776654 57888776321110 01234444442 689
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
||..++..+.+.+.+... .||+++++-
T Consensus 216 vVaegGI~t~edv~~l~~-------------~GadgvlVG 242 (272)
T 3qja_A 216 RIAESGVRGTADLLAYAG-------------AGADAVLVG 242 (272)
T ss_dssp EEEESCCCSHHHHHHHHH-------------TTCSEEEEC
T ss_pred EEEECCCCCHHHHHHHHH-------------cCCCEEEEc
Confidence 999999999999999988 999999984
No 128
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=78.67 E-value=4.1 Score=35.62 Aligned_cols=42 Identities=33% Similarity=0.465 Sum_probs=36.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhc
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSD 59 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e 59 (572)
+-.|+-|.|...++..++.+++.||+|..+++.++||+.+++
T Consensus 78 vflllqdqdeneleefkrkiesqgyevrkvtddeealkivre 119 (134)
T 2lci_A 78 VFLLLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVRE 119 (134)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHH
T ss_pred eEEEeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHHH
Confidence 345677888888999999999999999999999999988775
No 129
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=78.19 E-value=7.2 Score=38.45 Aligned_cols=106 Identities=10% Similarity=0.097 Sum_probs=69.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIi 93 (572)
.++++|+.+... ..++.+++...-.|. -.-+..+..+.+.. .|++|+=-.-.+ .-|..+++.+. .+|||.
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e-~~~~~~~Ea~a~G~PvI~ 312 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGE-SFGIVLVEAMAAGTAVVA 312 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCC-SSCHHHHHHHHHTCEEEE
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCC-CCchHHHHHHHcCCCEEE
Confidence 467888877765 566666654322233 23344556666666 578776532123 34778888886 899875
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
... ..+.+.+. .|-.+++..|-+.++|.++|..++.
T Consensus 313 ~~~----~~~~e~i~-------------~~~~g~~~~~~d~~~l~~~i~~l~~ 348 (406)
T 2gek_A 313 SDL----DAFRRVLA-------------DGDAGRLVPVDDADGMAAALIGILE 348 (406)
T ss_dssp CCC----HHHHHHHT-------------TTTSSEECCTTCHHHHHHHHHHHHH
T ss_pred ecC----CcHHHHhc-------------CCCceEEeCCCCHHHHHHHHHHHHc
Confidence 422 33444444 6888999999999999999988875
No 130
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=77.86 E-value=14 Score=32.87 Aligned_cols=105 Identities=10% Similarity=0.061 Sum_probs=71.6
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCEEEE-E--CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcE
Q 008254 17 GLRVLLLDQDS-SAAAELKFKLEAMDYIVST-F--YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPT 91 (572)
Q Consensus 17 ~lRVLVVDDD~-~~~~~L~~lL~~~gy~V~t-a--~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPV 91 (572)
.++++|+.+.. .....++.+++..+ .|.. . -+.++..+++.. .|++|+-... . .-|..+++.+. .+||
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~----ad~~l~ps~~-e-~~~~~~~Ea~a~G~Pv 142 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYF-E-PFGLVALEAMCLGAIP 142 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECCSC-C-SSCHHHHHHHHTTCEE
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHH----CCEEEECCCC-C-CccHHHHHHHHCCCCE
Confidence 47888887754 35677888888876 4444 3 355577777766 6888875433 3 35788888886 8997
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
|.. ... .+.+. + .|-.+++..+-+.++|.++|..++.
T Consensus 143 I~~-~~~---~~~e~-------------~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 143 IAS-AVG---GLRDI-------------I-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp EEE-SCH---HHHHH-------------C-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred EEe-CCC---ChHHH-------------c-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 755 322 11111 1 3677899999999999999988876
No 131
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=76.24 E-value=13 Score=35.04 Aligned_cols=77 Identities=10% Similarity=0.050 Sum_probs=55.2
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHhhcCCCCeeEEEEeCCCCCCCCh-HHHHHHhc-
Q 008254 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVSTFY---NENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK- 87 (572)
Q Consensus 17 ~lRVLVV----DDD~~~~~~L~~lL~~~gy~V~ta~---~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG-~~lLe~Ir- 87 (572)
.-+||+. |-+..-...+..+|+..||+|.... ..++.++.+++ ..+|+|.+-..+...+.. -++++.++
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~--~~~d~v~lS~~~~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKK--YQPDIVGMSALLTTTMMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHH--HCCSEEEEECCSGGGTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHh
Confidence 4478887 7778888999999999999998543 67888888888 789999998876642333 33445553
Q ss_pred -----CCcEEEEe
Q 008254 88 -----DLPTIITS 95 (572)
Q Consensus 88 -----dlPVIiLS 95 (572)
++||++--
T Consensus 166 ~~~~~~~~v~vGG 178 (210)
T 1y80_A 166 AGLRDRVKVIVGG 178 (210)
T ss_dssp TTCGGGCEEEEES
T ss_pred cCCCCCCeEEEEC
Confidence 26655443
No 132
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=76.04 E-value=16 Score=36.53 Aligned_cols=107 Identities=13% Similarity=0.183 Sum_probs=69.7
Q ss_pred ccEEEEEeCC---HHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-C
Q 008254 17 GLRVLLLDQD---SSAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-D 88 (572)
Q Consensus 17 ~lRVLVVDDD---~~~~~~L~~lL~~~gy--~V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-d 88 (572)
.++++|+.+. ....+.|+.+++..+. .|.... +.++..+.+.. .|++|+-.. .+ .-|..+++.+. .
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~-~e-~~~~~~~Eama~G 349 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSF-NE-SFGLVAMEAQASG 349 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCS-CC-SSCHHHHHHHHTT
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECcc-cc-CCchHHHHHHHcC
Confidence 5678888761 2345667777776553 344333 44677777776 577776433 23 35778888886 8
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 89 LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
+|||... .+... +.+. .|..+++..|-+.++|.++|..++.
T Consensus 350 ~PvI~~~-~~~~~---e~i~-------------~~~~g~~~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 350 TPVIAAR-VGGLP---IAVA-------------EGETGLLVDGHSPHAWADALATLLD 390 (438)
T ss_dssp CCEEEES-CTTHH---HHSC-------------BTTTEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEecC-CCChh---HHhh-------------CCCcEEECCCCCHHHHHHHHHHHHc
Confidence 9988653 33322 2233 6778999999999999999988875
No 133
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.96 E-value=4.3 Score=32.63 Aligned_cols=51 Identities=27% Similarity=0.346 Sum_probs=39.6
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCCH---HHHhhhCCCCCCHHHHHHhhhhhhhh
Q 008254 332 KVDWTPELHKKFVQAVEQLGVDQAIPS---RILELMKVEGLTRHNVASHLQKYRMH 384 (572)
Q Consensus 332 r~~Wt~eLh~~Fv~av~~lG~~~a~Pk---~il~lM~v~glt~~~v~SHLQkyr~~ 384 (572)
+-.||+|=+.+|+++|.++|.+.-.|. .|-+.| +|=|-.+|+.|-|+|-..
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 347999999999999999995432233 444554 789999999999998654
No 134
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=75.38 E-value=20 Score=36.76 Aligned_cols=106 Identities=13% Similarity=0.107 Sum_probs=71.5
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEE
Q 008254 17 GLRVLLLDQDS-SAAAELKFKLEAMDYIVS-TFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTI 92 (572)
Q Consensus 17 ~lRVLVVDDD~-~~~~~L~~lL~~~gy~V~-ta~-~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVI 92 (572)
.++++|+.+.+ ...+.|+.+.+..+-.|. ... +.++....+.. .|++|+=-.. . .-|..++|.+. .+|||
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~~-E-~~~~~~lEAma~G~PvI 393 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSRF-E-PCGLTQLYALRYGCIPV 393 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCSC-C-SSCSHHHHHHHHTCEEE
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECccc-C-CCCHHHHHHHHCCCCEE
Confidence 57888888765 367778888777654443 223 44444466666 5888764432 3 35677888876 89998
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCC---------ccEEEeCCCCHHHHHHHHHHHH
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLG---------AVEFLRKPLSEDKLRNLWQHVV 145 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~G---------A~dYL~KPvs~eeL~~~~q~Vl 145 (572)
.... .-+.+.+. .| ..+++..|-+.++|.+++..++
T Consensus 394 ~s~~----gg~~e~v~-------------~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 438 (485)
T 1rzu_A 394 VART----GGLADTVI-------------DANHAALASKAATGVQFSPVTLDGLKQAIRRTV 438 (485)
T ss_dssp EESS----HHHHHHCC-------------BCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHH
T ss_pred EeCC----CChhheec-------------ccccccccccCCcceEeCCCCHHHHHHHHHHHH
Confidence 7533 22333333 55 7899999999999999998887
No 135
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=75.23 E-value=13 Score=31.97 Aligned_cols=105 Identities=15% Similarity=0.194 Sum_probs=69.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CC-cEEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVST-FYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DL-PTII 93 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~t-a~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dl-PVIi 93 (572)
.++++|+.+.+. ...+..+++..+..|.. +-+.++..+.+.. .|++|+-.. .. .-|..+++.+. .+ |||.
T Consensus 32 ~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~----adv~v~ps~-~e-~~~~~~~Eama~G~vPvi~ 104 (166)
T 3qhp_A 32 DIVLLLKGKGPD-EKKIKLLAQKLGVKAEFGFVNSNELLEILKT----CTLYVHAAN-VE-SEAIACLEAISVGIVPVIA 104 (166)
T ss_dssp GEEEEEECCSTT-HHHHHHHHHHHTCEEECCCCCHHHHHHHHTT----CSEEEECCC-SC-CCCHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCeEEEeecCHHHHHHHHHh----CCEEEECCc-cc-CccHHHHHHHhcCCCcEEe
Confidence 578889987644 46777888777765554 2235666677766 688887544 33 35788899886 76 9887
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
.+..+.... ++ ..|. ++..+-+.++|.+++..++.
T Consensus 105 ~~~~~~~~~------------~~----~~~~--~~~~~~~~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 105 NSPLSATRQ------------FA----LDER--SLFEPNNAKDLSAKIDWWLE 139 (166)
T ss_dssp CCTTCGGGG------------GC----SSGG--GEECTTCHHHHHHHHHHHHH
T ss_pred eCCCCchhh------------hc----cCCc--eEEcCCCHHHHHHHHHHHHh
Confidence 443332211 11 1232 27788999999999988876
No 136
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=75.15 E-value=4.5 Score=38.95 Aligned_cols=96 Identities=5% Similarity=-0.003 Sum_probs=64.0
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEE--eCCCCCCCCh-HHHHHH
Q 008254 16 KGLRVLLL----DQDSSAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIV--EVTTSNTDGS-FKFLET 85 (572)
Q Consensus 16 ~~lRVLVV----DDD~~~~~~L~~lL~~~gy~V~ta---~~a~EAL~~L~e~~~~pDLVIv--Dv~mPd~mdG-~~lLe~ 85 (572)
..-+|++. |-+..=...+..+|+..||+|+.. -..++.++.+.+ ..+|+|.+ -..|...+.. -++++.
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~--~~~d~v~l~~S~l~~~~~~~~~~~i~~ 168 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAK--HKGEKVLLVGSALMTTSMLGQKDLMDR 168 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHH--TTTSCEEEEEECSSHHHHTHHHHHHHH
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHH--cCCCEEEEEchhcccCcHHHHHHHHHH
Confidence 34578877 777888889999999999999843 467888899999 88999988 7766431332 334455
Q ss_pred hc------CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 86 AK------DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 86 Ir------dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
++ +++|++=-..-..+. +-. .||+.|-.
T Consensus 169 l~~~~~~~~v~v~vGG~~~~~~~---a~~-------------iGad~~~~ 202 (215)
T 3ezx_A 169 LNEEKLRDSVKCMFGGAPVSDKW---IEE-------------IGADATAE 202 (215)
T ss_dssp HHHTTCGGGSEEEEESSSCCHHH---HHH-------------HTCCBCCS
T ss_pred HHHcCCCCCCEEEEECCCCCHHH---HHH-------------hCCeEEEC
Confidence 43 356554433333332 223 78988854
No 137
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=74.40 E-value=25 Score=34.80 Aligned_cols=105 Identities=11% Similarity=0.055 Sum_probs=73.5
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCEEEE-EC--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcE
Q 008254 17 GLRVLLLDQDS-SAAAELKFKLEAMDYIVST-FY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPT 91 (572)
Q Consensus 17 ~lRVLVVDDD~-~~~~~L~~lL~~~gy~V~t-a~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPV 91 (572)
.++++|+.+.+ .....++.+.+..+ .++. .. +.++..+.+.. .|++|+=... + .-|..++|.+. .+||
T Consensus 285 ~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~----adv~v~ps~~-e-~~~~~~~EAma~G~Pv 357 (439)
T 3fro_A 285 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYF-E-PFGLVALEAMCLGAIP 357 (439)
T ss_dssp GEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECBSC-C-SSCHHHHHHHHTTCEE
T ss_pred CeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHHH----CCEEEeCCCC-C-CccHHHHHHHHCCCCe
Confidence 57888888764 34477888888877 4443 33 56667777766 5888765443 3 35788888886 8998
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
|.. ..+ .+.+.+. .| .+++..|-+.++|.+++..++.
T Consensus 358 i~s-~~~---~~~e~~~-------------~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 358 IAS-AVG---GLRDIIT-------------NE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp EEE-SST---HHHHHCC-------------TT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred EEc-CCC---CcceeEE-------------cC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 864 333 2223332 56 8999999999999999988887
No 138
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=74.17 E-value=13 Score=36.13 Aligned_cols=105 Identities=15% Similarity=0.223 Sum_probs=68.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIi 93 (572)
.++++|+.+.. .+.+..+++..+. .|......++..+.+.. .|++|+-... . .-|..+++.+. .+|||.
T Consensus 228 ~~~l~i~G~g~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~~-e-~~~~~~~Ea~a~G~Pvi~ 299 (374)
T 2iw1_A 228 NTLLFVVGQDK--PRKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAYQ-E-AAGIVLLEAITAGLPVLT 299 (374)
T ss_dssp TEEEEEESSSC--CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCSC-C-SSCHHHHHHHHHTCCEEE
T ss_pred ceEEEEEcCCC--HHHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEecccc-C-CcccHHHHHHHCCCCEEE
Confidence 35777887754 2456666655442 45544444455566655 5777764432 3 35788888886 899987
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC-CCCHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK-PLSEDKLRNLWQHVVH 146 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K-Pvs~eeL~~~~q~Vlr 146 (572)
....+..+ .+. .|-.+++.. |-+.++|.+++..++.
T Consensus 300 ~~~~~~~e----~i~-------------~~~~g~~~~~~~~~~~l~~~i~~l~~ 336 (374)
T 2iw1_A 300 TAVCGYAH----YIA-------------DANCGTVIAEPFSQEQLNEVLRKALT 336 (374)
T ss_dssp ETTSTTTH----HHH-------------HHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred ecCCCchh----hhc-------------cCCceEEeCCCCCHHHHHHHHHHHHc
Confidence 65433322 233 567789997 8999999999988875
No 139
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=73.66 E-value=8.4 Score=39.18 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=66.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCE----------EEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYI----------VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~----------V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I 86 (572)
..+++||.+.+...+.|+.++++.|.. |.......+....+.. .|++++--..-. ..|..++|.+
T Consensus 225 ~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~----aDv~vl~ss~~e-~gg~~~lEAm 299 (374)
T 2xci_A 225 SLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPV----GKIAIVGGTFVN-IGGHNLLEPT 299 (374)
T ss_dssp TCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGG----EEEEEECSSSSS-SCCCCCHHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHh----CCEEEECCcccC-CCCcCHHHHH
Confidence 468888888776556777777776643 3332323444555554 688776322223 3456678877
Q ss_pred c-CCcEEEEeCCCChHHHHHH-HHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 87 K-DLPTIITSNIHCLSTMMKC-IAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 87 r-dlPVIiLS~~~d~~~~~ka-i~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
. .+|||.-+.......+.+. .. .| ++..+-+.++|.+++..++.
T Consensus 300 A~G~PVI~~~~~~~~~e~~~~~~~-------------~G---~l~~~~d~~~La~ai~~ll~ 345 (374)
T 2xci_A 300 CWGIPVIYGPYTHKVNDLKEFLEK-------------EG---AGFEVKNETELVTKLTELLS 345 (374)
T ss_dssp TTTCCEEECSCCTTSHHHHHHHHH-------------TT---CEEECCSHHHHHHHHHHHHH
T ss_pred HhCCCEEECCCccChHHHHHHHHH-------------CC---CEEEeCCHHHHHHHHHHHHh
Confidence 6 8999864333433333332 23 34 56666789999998888876
No 140
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=72.77 E-value=22 Score=31.47 Aligned_cols=105 Identities=10% Similarity=0.089 Sum_probs=67.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHH--hC----CCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLE--AM----DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DL 89 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~--~~----gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dl 89 (572)
.++++|+.+.... ..++.+++ .. ...+.-.-+.++..+.++. .|++|+=.. .. .-|..+++.+. .+
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~-~e-~~~~~~~Eama~G~ 122 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAK-DE-DFGLTPIEAMASGK 122 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCS-SC-CSCHHHHHHHHTTC
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCC-cC-CCChHHHHHHHcCC
Confidence 4678888764432 33444444 21 2334445566777777776 578876332 33 35778888886 89
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
|||.... ....+.+. .|-.+++. +-+.++|.++|..++.
T Consensus 123 PvI~~~~----~~~~e~i~-------------~~~~g~~~-~~d~~~l~~~i~~l~~ 161 (177)
T 2f9f_A 123 PVIAVNE----GGFKETVI-------------NEKTGYLV-NADVNEIIDAMKKVSK 161 (177)
T ss_dssp CEEEESS----HHHHHHCC-------------BTTTEEEE-CSCHHHHHHHHHHHHH
T ss_pred cEEEeCC----CCHHHHhc-------------CCCccEEe-CCCHHHHHHHHHHHHh
Confidence 9886532 22333333 67788999 9999999998888775
No 141
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=72.71 E-value=26 Score=32.21 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=50.1
Q ss_pred CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCC------CCChHHHHHHhc---CCcEEEEeCCCChHHHHHHHHH
Q 008254 40 MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN------TDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIAI 109 (572)
Q Consensus 40 ~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd------~mdG~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~ 109 (572)
.+..+. .+.+..++...... .+|.|+++-..+. ...+++.++.++ ++||++.-+.. .+.+.+++.
T Consensus 107 ~~~~~~v~~~t~~e~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~- 181 (215)
T 1xi3_A 107 PNLIIGASVYSLEEALEAEKK---GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLK- 181 (215)
T ss_dssp TTSEEEEEESSHHHHHHHHHH---TCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHT-
T ss_pred CCCEEEEecCCHHHHHHHHhc---CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHH-
Confidence 344433 56788887765544 6899998753332 124677887775 78998877766 777777777
Q ss_pred HHhhhhccccccCCccEEEe
Q 008254 110 MVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 110 ~~~~~~~~~~~~~GA~dYL~ 129 (572)
.||+++.+
T Consensus 182 ------------~Ga~gv~v 189 (215)
T 1xi3_A 182 ------------TGVDGIAV 189 (215)
T ss_dssp ------------TTCSEEEE
T ss_pred ------------cCCCEEEE
Confidence 89998854
No 142
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=72.41 E-value=22 Score=40.87 Aligned_cols=118 Identities=12% Similarity=0.124 Sum_probs=78.4
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCCh-HHHHHHhc-
Q 008254 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK- 87 (572)
Q Consensus 17 ~lRVLVV----DDD~~~~~~L~~lL~~~gy~V~t---a~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG-~~lLe~Ir- 87 (572)
..+|+|. |.+..-...+..+|+..||+|.. ..+.++.++.+.+ ..+|+|.+-..|...+.. -++++.++
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e--~~adiVglSsl~~~~~~~~~~vi~~Lr~ 681 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVD--ADVHAVGVSTLAAGHKTLVPELIKELNS 681 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH--TTCSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHH--cCCCEEEEeeecHHHHHHHHHHHHHHHh
Confidence 4567765 45556677788899999999984 3478999999998 789999887766431222 33444454
Q ss_pred ----CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008254 88 ----DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKAFN 150 (572)
Q Consensus 88 ----dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~~~ 150 (572)
+++ |++-+..-......+.. .|+++|+..-.+..++...+...+.....
T Consensus 682 ~G~~dv~-VivGG~~P~~d~~~l~~-------------~GaD~~f~pgtd~~e~~~~i~~~l~~~~~ 734 (762)
T 2xij_A 682 LGRPDIL-VMCGGVIPPQDYEFLFE-------------VGVSNVFGPGTRIPKAAVQVLDDIEKCLE 734 (762)
T ss_dssp TTCTTSE-EEEEESCCGGGHHHHHH-------------HTCCEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCE-EEEeCCCCcccHHHHHh-------------CCCCEEeCCCCCHHHHHHHHHHHHHHHhh
Confidence 333 33443111112223344 89999999777888888888877766544
No 143
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=71.74 E-value=17 Score=34.07 Aligned_cols=80 Identities=11% Similarity=0.167 Sum_probs=54.5
Q ss_pred HHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCC------CCChHHHHHHhc---CCcEEEEeCCCCh
Q 008254 31 AELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN------TDGSFKFLETAK---DLPTIITSNIHCL 100 (572)
Q Consensus 31 ~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd------~mdG~~lLe~Ir---dlPVIiLS~~~d~ 100 (572)
+.++.++. +..+. ++.+.+++...... ..|.|+++-..+. ...++++++.++ ++|||+.-+. +.
T Consensus 102 ~~~~~~~~--~~~ig~sv~t~~~~~~a~~~---gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~ 175 (221)
T 1yad_A 102 KQIRARFP--HLHIGRSVHSLEEAVQAEKE---DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TP 175 (221)
T ss_dssp HHHHHHCT--TCEEEEEECSHHHHHHHHHT---TCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CG
T ss_pred HHHHHHCC--CCEEEEEcCCHHHHHHHHhC---CCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CH
Confidence 34444432 54443 67888888777655 5899998764322 013577777774 7999988877 78
Q ss_pred HHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 101 STMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 101 ~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
+.+.+++. .||+.+.+
T Consensus 176 ~nv~~~~~-------------~Ga~gv~v 191 (221)
T 1yad_A 176 DRLRDVKQ-------------AGADGIAV 191 (221)
T ss_dssp GGHHHHHH-------------TTCSEEEE
T ss_pred HHHHHHHH-------------cCCCEEEE
Confidence 88889988 99998765
No 144
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=70.93 E-value=38 Score=35.80 Aligned_cols=96 Identities=19% Similarity=0.222 Sum_probs=64.4
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCC-------C----CCCCCh
Q 008254 17 GLRVLLLD----QDSSAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVT-------T----SNTDGS 79 (572)
Q Consensus 17 ~lRVLVVD----DD~~~~~~L~~lL~~~gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~-------m----Pd~mdG 79 (572)
+..++++| +.....+.++.+-+..+..|. .+.+.++|..+++. ..|.|++-.. . .+ ...
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a---GAD~I~vG~g~Gs~~~tr~~~g~g-~p~ 231 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVG-VPQ 231 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT---TCSEEEECC---------CCSCBC-CCH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc---CCCEEEEeCCCCcCcccccccccc-hhH
Confidence 45677775 233445556555554465554 68899999887765 6898888321 0 01 123
Q ss_pred HHHHHHhc------CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 80 FKFLETAK------DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 80 ~~lLe~Ir------dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
+.++..+. ++|||.--+..+...+.+++. +||+...+
T Consensus 232 ~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kala-------------lGAd~V~v 274 (400)
T 3ffs_A 232 ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALA-------------VGASSVMI 274 (400)
T ss_dssp HHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHT-------------TTCSEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHH-------------cCCCEEEE
Confidence 45555442 799999888889999999999 99998876
No 145
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=70.63 E-value=14 Score=30.24 Aligned_cols=49 Identities=12% Similarity=0.126 Sum_probs=39.2
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCCHHHHhhh-CCCCCCHHHHHHhhhhhh
Q 008254 332 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELM-KVEGLTRHNVASHLQKYR 382 (572)
Q Consensus 332 r~~Wt~eLh~~Fv~av~~lG~~~a~Pk~il~lM-~v~glt~~~v~SHLQkyr 382 (572)
+-.||.+=...|++||.++|.+ +|.+--.+- -|+|=|-.+|+.|-+.+.
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~--~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRG--SSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSS--SHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--CCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3469999999999999999953 777655543 468999999999977654
No 146
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=70.49 E-value=1.6 Score=43.64 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=35.8
Q ss_pred ccEEEEEeCC--HHHHHHHHHHHHhCCCEEEEECCHHH--HHHHhhcCCCCeeEEEEe
Q 008254 17 GLRVLLLDQD--SSAAAELKFKLEAMDYIVSTFYNENE--ALSAFSDKPENFHVAIVE 70 (572)
Q Consensus 17 ~lRVLVVDDD--~~~~~~L~~lL~~~gy~V~ta~~a~E--AL~~L~e~~~~pDLVIvD 70 (572)
|.|||||+++ +.....|...|+..||+|.......- -...|. .||+||++
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~----~yDvIIl~ 57 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA----KQDLVILS 57 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH----TCSEEEEE
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh----cCCEEEEc
Confidence 4689999988 66888899999999999886554321 123344 48999886
No 147
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=69.77 E-value=41 Score=33.73 Aligned_cols=87 Identities=18% Similarity=0.047 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCC--CC---hHHHHHHhc-CCcEEEEeCCCCh
Q 008254 28 SAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT--DG---SFKFLETAK-DLPTIITSNIHCL 100 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~--md---G~~lLe~Ir-dlPVIiLS~~~d~ 100 (572)
..+..|....+..|..+. .+.+.+|+..++.. .+|+|=+.-+-... .| -.+++..+. ++++|.-++....
T Consensus 156 ~~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~---ga~iIGinnr~l~t~~~dl~~~~~L~~~ip~~~~vIaesGI~t~ 232 (272)
T 3tsm_A 156 DLAKELEDTAFALGMDALIEVHDEAEMERALKL---SSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVGESGIFTH 232 (272)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSHHHHHHHTTS---CCSEEEEECBCTTTCCBCTHHHHHHHHHSCTTSEEEEESSCCSH
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc---CCCEEEECCCCCccCCCChHHHHHHHHhCCCCCcEEEECCCCCH
Confidence 344555555666788654 78899998777755 67877665322110 11 123444444 7899999999999
Q ss_pred HHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 101 STMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 101 ~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
+.+.++.. +||+++|+-
T Consensus 233 edv~~l~~-------------~Ga~gvLVG 249 (272)
T 3tsm_A 233 EDCLRLEK-------------SGIGTFLIG 249 (272)
T ss_dssp HHHHHHHT-------------TTCCEEEEC
T ss_pred HHHHHHHH-------------cCCCEEEEc
Confidence 99999988 999999873
No 148
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=69.38 E-value=25 Score=35.30 Aligned_cols=113 Identities=10% Similarity=0.024 Sum_probs=73.5
Q ss_pred CccEEEEE----eCCHHHHHHHHHH--------HHhC-CCEEEE---ECCHHHHHHHhhcCCCCeeEEEEeCCCCC---C
Q 008254 16 KGLRVLLL----DQDSSAAAELKFK--------LEAM-DYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSN---T 76 (572)
Q Consensus 16 ~~lRVLVV----DDD~~~~~~L~~l--------L~~~-gy~V~t---a~~a~EAL~~L~e~~~~pDLVIvDv~mPd---~ 76 (572)
...+|++. |-+..=...+..+ |+.. ||+|+- .-..++.++.+.+ ..+|+|.+-..+.. .
T Consensus 119 ~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e--~~~d~VglS~l~t~~~~~ 196 (262)
T 1xrs_B 119 RKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVE--LEADVLLVSQTVTQKNVH 196 (262)
T ss_dssp SCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHH--TTCSEEEEECCCCTTSHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEEeecCCccch
Confidence 34566654 5666666677777 9999 999974 4478899999998 89999999887764 1
Q ss_pred CChH-HHHHHhc------CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 77 DGSF-KFLETAK------DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 77 mdG~-~lLe~Ir------dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
+..+ ++++.++ +++| ++-+..-.. ..+.. .||+.|..--....++...+...+.
T Consensus 197 ~~~~~~~i~~L~~~g~~~~i~v-ivGG~~~~~--~~a~~-------------iGad~~~~da~~~~~~a~~l~~~~~ 257 (262)
T 1xrs_B 197 IQNMTHLIELLEAEGLRDRFVL-LCGGPRINN--EIAKE-------------LGYDAGFGPGRFADDVATFAVKTLN 257 (262)
T ss_dssp HHHHHHHHHHHHHTTCGGGSEE-EEECTTCCH--HHHHT-------------TTCSEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEE-EEECCcCCH--HHHHH-------------cCCeEEECCchHHHHHHHHHHHHHH
Confidence 2222 2344443 2554 444433211 11333 8999999888877777776655444
No 149
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=69.27 E-value=12 Score=29.89 Aligned_cols=48 Identities=27% Similarity=0.346 Sum_probs=39.1
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCCHHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 008254 332 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 384 (572)
Q Consensus 332 r~~Wt~eLh~~Fv~av~~lG~~~a~Pk~il~lM~v~glt~~~v~SHLQkyr~~ 384 (572)
+-.||+|=+..|+++|.++|- -=+.|-.. ++|=|..+|+.|.++|-..
T Consensus 9 ~~~WT~eEd~~l~~~~~~~G~---~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 9 SVKWTIEEKELFEQGLAKFGR---RWTKISKL--IGSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHTCS---CHHHHHHH--HSSSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999995 23556665 4799999999999988544
No 150
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=69.27 E-value=35 Score=35.61 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=66.2
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCCCCC-----------CC
Q 008254 17 GLRVLLLD----QDSSAAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT-----------DG 78 (572)
Q Consensus 17 ~lRVLVVD----DD~~~~~~L~~lL~~~-gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~-----------md 78 (572)
+..+++|| +.....+.++.+-+.. +..|. .+.+.++|..+.+. ..|.|++-+. |+. ..
T Consensus 120 Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a---GAD~I~vG~g-pGs~~~tr~~~g~g~p 195 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIG-PGSICTTRIVTGVGVP 195 (366)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSS-CSTTBCHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc---CCCEEEEecC-CCCCCCcccccCcccc
Confidence 56678875 3445556666666555 55443 68899999988776 6899888321 210 12
Q ss_pred hHHHHHHhc------CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 79 SFKFLETAK------DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 79 G~~lLe~Ir------dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
.+.++..+. ++|||.--+..+...+.+++. +||+...+=
T Consensus 196 ~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala-------------~GAd~V~vG 240 (366)
T 4fo4_A 196 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIA-------------AGASCVMVG 240 (366)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHH-------------TTCSEEEES
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHH-------------cCCCEEEEC
Confidence 244444432 799998888888999999999 999988763
No 151
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=68.48 E-value=29 Score=39.58 Aligned_cols=117 Identities=13% Similarity=0.053 Sum_probs=77.0
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCCh-HHHHHHhc
Q 008254 16 KGLRVLLL----DQDSSAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK 87 (572)
Q Consensus 16 ~~lRVLVV----DDD~~~~~~L~~lL~~~gy~V~ta---~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG-~~lLe~Ir 87 (572)
+..+|+|. |.+..=...+..+|+..||+|... .+.++.++.+.+ ..+|+|.+-..|...+.. -++++.++
T Consensus 595 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e--~~adiVglSsl~~~~~~~~~~vi~~L~ 672 (727)
T 1req_A 595 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVE--ADVHVVGVSSLAGGHLTLVPALRKELD 672 (727)
T ss_dssp SCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHH--TTCSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH--cCCCEEEEeeecHhHHHHHHHHHHHHH
Confidence 34577766 556666777888999999999843 478999999998 789999887766541222 33444554
Q ss_pred -----CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHHH
Q 008254 88 -----DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHKA 148 (572)
Q Consensus 88 -----dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr~ 148 (572)
++ .|++-+..-......+.. .|+++|+.--.+..++...+...++..
T Consensus 673 ~~G~~~i-~VivGG~~p~~d~~~l~~-------------~GaD~~f~~gt~~~e~a~~l~~~l~~~ 724 (727)
T 1req_A 673 KLGRPDI-LITVGGVIPEQDFDELRK-------------DGAVEIYTPGTVIPESAISLVKKLRAS 724 (727)
T ss_dssp HTTCTTS-EEEEEESCCGGGHHHHHH-------------TTEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCC-EEEEcCCCccccHHHHHh-------------CCCCEEEcCCccHHHHHHHHHHHHHHh
Confidence 33 334443211222223344 999999998788888877776666543
No 152
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=67.96 E-value=16 Score=34.59 Aligned_cols=68 Identities=12% Similarity=0.250 Sum_probs=49.9
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCE---EE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYI---VS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~---V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I 86 (572)
++.+.+|..||-++...+..+..++..|+. |. ...++.+.+..+.. ..||+|++|....+ -.++++.+
T Consensus 78 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~--~~fD~V~~d~~~~~---~~~~l~~~ 149 (221)
T 3dr5_A 78 LADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLAN--DSYQLVFGQVSPMD---LKALVDAA 149 (221)
T ss_dssp SCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCT--TCEEEEEECCCTTT---HHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcC--CCcCeEEEcCcHHH---HHHHHHHH
Confidence 555679999999999999999999988764 55 56677776655534 68999999975443 33344443
No 153
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=67.74 E-value=19 Score=36.81 Aligned_cols=106 Identities=11% Similarity=0.025 Sum_probs=69.8
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEE
Q 008254 17 GLRVLLLDQDS-SAAAELKFKLEAMDYIVS-TFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTI 92 (572)
Q Consensus 17 ~lRVLVVDDD~-~~~~~L~~lL~~~gy~V~-ta~-~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVI 92 (572)
.++++|+.+.+ ...+.|+.+....+-.|. ... +.++....+.. .|++|+=-. .. .-|..+++.+. .+|||
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E-~~g~~~lEAma~G~PvI 394 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSR-FE-PCGLTQLYGLKYGTLPL 394 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CC-SSCSHHHHHHHHTCEEE
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCc-cC-CCcHHHHHHHHCCCCEE
Confidence 56778887654 466777777777654343 222 44444466665 577776433 23 35677888876 89998
Q ss_pred EEeCCCChHHHHHHHHHHHhhhhccccccCC---------ccEEEeCCCCHHHHHHHHHHHH
Q 008254 93 ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLG---------AVEFLRKPLSEDKLRNLWQHVV 145 (572)
Q Consensus 93 iLS~~~d~~~~~kai~~~~~~~~~~~~~~~G---------A~dYL~KPvs~eeL~~~~q~Vl 145 (572)
.... .-+.+.+. .| ..+++..|-+.++|.++|..++
T Consensus 395 ~s~~----gg~~e~v~-------------~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 439 (485)
T 2qzs_A 395 VRRT----GGLADTVS-------------DCSLENLADGVASGFVFEDSNAWSLLRAIRRAF 439 (485)
T ss_dssp EESS----HHHHHHCC-------------BCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHH
T ss_pred ECCC----CCccceec-------------cCccccccccccceEEECCCCHHHHHHHHHHHH
Confidence 6532 22333333 55 7899999999999999998887
No 154
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=66.25 E-value=17 Score=35.50 Aligned_cols=106 Identities=11% Similarity=0.148 Sum_probs=64.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCC------CCCCChHHHHHHhc-
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTT------SNTDGSFKFLETAK- 87 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~m------Pd~mdG~~lLe~Ir- 87 (572)
.++++|+.+.+. ...++.+.....-.|. -.-+.++..+++.. .|++|+=... .. .-|..++|.+.
T Consensus 229 ~~~l~i~G~g~~-~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----ad~~v~ps~~~~~~~~~e-~~~~~~~Ea~a~ 302 (394)
T 3okp_A 229 DAQLLIVGSGRY-ESTLRRLATDVSQNVKFLGRLEYQDMINTLAA----ADIFAMPARTRGGGLDVE-GLGIVYLEAQAC 302 (394)
T ss_dssp TCEEEEECCCTT-HHHHHHHTGGGGGGEEEEESCCHHHHHHHHHH----CSEEEECCCCBGGGTBCC-SSCHHHHHHHHT
T ss_pred CeEEEEEcCchH-HHHHHHHHhcccCeEEEcCCCCHHHHHHHHHh----CCEEEecCcccccccccc-ccCcHHHHHHHc
Confidence 356777765432 2334444422222333 33344666677666 5777764433 13 35778888886
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 88 DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
.+|||. |..+... +. ++.| .+++..+-+.++|.+++..++.
T Consensus 303 G~PvI~-~~~~~~~---e~-------------i~~~-~g~~~~~~d~~~l~~~i~~l~~ 343 (394)
T 3okp_A 303 GVPVIA-GTSGGAP---ET-------------VTPA-TGLVVEGSDVDKLSELLIELLD 343 (394)
T ss_dssp TCCEEE-CSSTTGG---GG-------------CCTT-TEEECCTTCHHHHHHHHHHHHT
T ss_pred CCCEEE-eCCCChH---HH-------------HhcC-CceEeCCCCHHHHHHHHHHHHh
Confidence 899886 3333221 11 2267 9999999999999999988875
No 155
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=66.04 E-value=38 Score=33.18 Aligned_cols=99 Identities=7% Similarity=0.096 Sum_probs=55.5
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEE
Q 008254 18 LRVLLL-DQDSSAAAELKFKLEAMDYIVSTF--YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (572)
Q Consensus 18 lRVLVV-DDD~~~~~~L~~lL~~~gy~V~ta--~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIi 93 (572)
++++++ .+++...+.++.++...+ .|... -...+..+++.. .|++|+.- .|. ++|.+. .+|||+
T Consensus 239 ~~l~i~~g~~~~~~~~l~~~~~~~~-~v~~~g~~~~~~~~~~~~~----ad~~v~~S------g~~-~lEA~a~G~PvI~ 306 (384)
T 1vgv_A 239 IQIVYPVHLNPNVREPVNRILGHVK-NVILIDPQEYLPFVWLMNH----AWLILTDS------GGI-QEEAPSLGKPVLV 306 (384)
T ss_dssp EEEEEECCBCHHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHHH----CSEEEESS------STG-GGTGGGGTCCEEE
T ss_pred eEEEEEcCCCHHHHHHHHHHhhcCC-CEEEeCCCCHHHHHHHHHh----CcEEEECC------cch-HHHHHHcCCCEEE
Confidence 455543 444444555555543221 23321 122444455544 46766532 233 556554 899997
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
....+.... .+. .| .++++.+ +.++|.+++..++.
T Consensus 307 ~~~~~~~~e---~v~-------------~g-~g~lv~~-d~~~la~~i~~ll~ 341 (384)
T 1vgv_A 307 MRDTTERPE---AVT-------------AG-TVRLVGT-DKQRIVEEVTRLLK 341 (384)
T ss_dssp ESSCCSCHH---HHH-------------HT-SEEEECS-SHHHHHHHHHHHHH
T ss_pred ccCCCCcch---hhh-------------CC-ceEEeCC-CHHHHHHHHHHHHh
Confidence 754233222 244 67 8899988 99999999888875
No 156
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=65.20 E-value=48 Score=32.44 Aligned_cols=99 Identities=9% Similarity=0.102 Sum_probs=58.1
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEE
Q 008254 18 LRVLLL-DQDSSAAAELKFKLEAMDYIVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (572)
Q Consensus 18 lRVLVV-DDD~~~~~~L~~lL~~~gy~V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIi 93 (572)
++++++ .++...++.|+.++...+ .|.... ...+..+++.. .|++|+. . .|+ ++|.+. .+|||+
T Consensus 231 ~~lv~~~g~~~~~~~~l~~~~~~~~-~v~~~g~~g~~~~~~~~~~----ad~~v~~----S--~g~-~lEA~a~G~PvI~ 298 (376)
T 1v4v_A 231 LTFVYPVHLNPVVREAVFPVLKGVR-NFVLLDPLEYGSMAALMRA----SLLLVTD----S--GGL-QEEGAALGVPVVV 298 (376)
T ss_dssp SEEEEECCSCHHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHHT----EEEEEES----C--HHH-HHHHHHTTCCEEE
T ss_pred eEEEEECCCCHHHHHHHHHHhccCC-CEEEECCCCHHHHHHHHHh----CcEEEEC----C--cCH-HHHHHHcCCCEEe
Confidence 566664 656555666666554322 344331 23344555554 6787753 2 356 667665 899998
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
+........+ +. .| .++++. .+.++|.+++..++.
T Consensus 299 ~~~~~~~~~~---~~-------------~g-~g~lv~-~d~~~la~~i~~ll~ 333 (376)
T 1v4v_A 299 LRNVTERPEG---LK-------------AG-ILKLAG-TDPEGVYRVVKGLLE 333 (376)
T ss_dssp CSSSCSCHHH---HH-------------HT-SEEECC-SCHHHHHHHHHHHHT
T ss_pred ccCCCcchhh---hc-------------CC-ceEECC-CCHHHHHHHHHHHHh
Confidence 6544443332 33 45 467774 499999998888774
No 157
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=65.03 E-value=41 Score=32.94 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=51.1
Q ss_pred CEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCC------CChHHHHHHhc-----CCcEEEEeCCCChHHHHHHHHH
Q 008254 42 YIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT------DGSFKFLETAK-----DLPTIITSNIHCLSTMMKCIAI 109 (572)
Q Consensus 42 y~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~------mdG~~lLe~Ir-----dlPVIiLS~~~d~~~~~kai~~ 109 (572)
..+. ++.+.+|+..+... .+|+|.+.-..|.. .-|++.+++++ ++|||.+.+. +.+.+..++.
T Consensus 136 ~~iG~S~ht~~Ea~~A~~~---GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~- 210 (243)
T 3o63_A 136 TLIGRSTHDPDQVAAAAAG---DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLD- 210 (243)
T ss_dssp CEEEEEECSHHHHHHHHHS---SCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHH-
T ss_pred CEEEEeCCCHHHHHHHhhC---CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHH-
Confidence 3443 78999998887665 68999885433220 13677777663 6899999887 6677888888
Q ss_pred HHhhhhccccccCCccEEEe
Q 008254 110 MVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 110 ~~~~~~~~~~~~~GA~dYL~ 129 (572)
.||+++.+
T Consensus 211 ------------aGa~gvav 218 (243)
T 3o63_A 211 ------------AGARRIVV 218 (243)
T ss_dssp ------------TTCCCEEE
T ss_pred ------------cCCCEEEE
Confidence 99998876
No 158
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=64.32 E-value=74 Score=31.80 Aligned_cols=80 Identities=15% Similarity=0.074 Sum_probs=56.7
Q ss_pred HHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCC----CC--CChHHHHHHhc---CCcEEEEeCCCChHHH
Q 008254 34 KFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS----NT--DGSFKFLETAK---DLPTIITSNIHCLSTM 103 (572)
Q Consensus 34 ~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mP----d~--mdG~~lLe~Ir---dlPVIiLS~~~d~~~~ 103 (572)
...++..|..|. .+.+.++|..+... ..|.|+++-.-. +. ...++++..++ ++|||+-.+..+.+.+
T Consensus 111 ~~~l~~~gi~vi~~v~t~~~a~~~~~~---GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v 187 (328)
T 2gjl_A 111 IAEFRRHGVKVIHKCTAVRHALKAERL---GVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGL 187 (328)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHH
T ss_pred HHHHHHcCCCEEeeCCCHHHHHHHHHc---CCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 344555565544 57788888776655 578888853222 10 14567888876 6999998888888999
Q ss_pred HHHHHHHHhhhhccccccCCccEEEe
Q 008254 104 MKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 104 ~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
.+++. .||++..+
T Consensus 188 ~~al~-------------~GAdgV~v 200 (328)
T 2gjl_A 188 VAALA-------------LGADAINM 200 (328)
T ss_dssp HHHHH-------------HTCSEEEE
T ss_pred HHHHH-------------cCCCEEEE
Confidence 99998 89998876
No 159
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=63.29 E-value=23 Score=31.33 Aligned_cols=56 Identities=14% Similarity=0.138 Sum_probs=43.5
Q ss_pred cccccCCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 8 LSAWKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 8 ~s~~~~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
+..++++ ++.+|.++..... ..+|+..+..+..+.+..+++.+|.. ++.|+++.+.
T Consensus 104 ~~~~~dL-~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~--g~~D~~~~~~ 159 (228)
T 2pyy_A 104 IRSIDDL-PGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQT--KKADAVVFDA 159 (228)
T ss_dssp CCSGGGC-TTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHHT--TSSSEEEEEH
T ss_pred cCCHHHc-CCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHHc--CCCCEEEecH
Confidence 3445565 5678888877652 34556678899999999999999999 8999999874
No 160
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=63.07 E-value=28 Score=30.21 Aligned_cols=74 Identities=14% Similarity=0.151 Sum_probs=50.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhc--CCCCeeEEEEeCCCCCCCChHHHHHHhc---CCc
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSD--KPENFHVAIVEVTTSNTDGSFKFLETAK---DLP 90 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e--~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlP 90 (572)
..|+|.||.|...+. -++-.|.++..+.+.+++.+.+++ ....+.+|+++-.+-+ .--+.+++++ ..|
T Consensus 2 ~~mkiaVIgD~dtv~-----GFrLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~--~i~~~i~~~~~~~~~P 74 (109)
T 2d00_A 2 VPVRMAVIADPETAQ-----GFRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLP--DPERAVERLMRGRDLP 74 (109)
T ss_dssp CCCCEEEEECHHHHH-----HHHHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCS--CHHHHHHHHTTCCCCC
T ss_pred CccEEEEEeCHHHHH-----HHHHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHH--hhHHHHHHHHhCCCCe
Confidence 457899999943332 244568888888887776554432 1147899999988876 4566677774 688
Q ss_pred EEEEeC
Q 008254 91 TIITSN 96 (572)
Q Consensus 91 VIiLS~ 96 (572)
+|+.-.
T Consensus 75 ~Il~IP 80 (109)
T 2d00_A 75 VLLPIA 80 (109)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 877544
No 161
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=62.81 E-value=20 Score=32.58 Aligned_cols=70 Identities=6% Similarity=0.076 Sum_probs=50.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEeC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS~ 96 (572)
|+|||..-.-.+-..|...|.+.|++|+.+....+.+..+.. ..+.++..|+.-++ . +.+..+-+|+..+
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~--~~~~~~~~D~~d~~-~------~~~~~~d~vi~~a 70 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLG--ATVATLVKEPLVLT-E------ADLDSVDAVVDAL 70 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTC--TTSEEEECCGGGCC-H------HHHTTCSEEEECC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccC--CCceEEeccccccc-H------hhcccCCEEEECC
Confidence 579999998889899999988889999866655555555555 56788888887665 2 4445556666544
No 162
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=62.66 E-value=45 Score=34.59 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=63.5
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCCCCC-----------CCh
Q 008254 17 GLRVLLLD----QDSSAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT-----------DGS 79 (572)
Q Consensus 17 ~lRVLVVD----DD~~~~~~L~~lL~~~gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~-----------mdG 79 (572)
+..+++|| +...+.+.++.+-+..+..|. .+.+.++|..++.. ..|.|++-+. |+. ...
T Consensus 117 Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a---GaD~I~VG~~-~Gs~~~tr~~~g~g~p~ 192 (361)
T 3khj_A 117 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIG-PGSICTTRIVAGVGVPQ 192 (361)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CCTTCCHHHHTCBCCCH
T ss_pred CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc---CcCEEEEecC-CCcCCCcccccCCCCCc
Confidence 34566664 333455566665555565544 67888888877765 6788887321 110 122
Q ss_pred HHHHHHhc------CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 80 FKFLETAK------DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 80 ~~lLe~Ir------dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
+..+..+. ++|||.--+..+...+.+++. +||+...+=
T Consensus 193 ~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala-------------~GAd~V~vG 236 (361)
T 3khj_A 193 ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALA-------------VGASSVMIG 236 (361)
T ss_dssp HHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHH-------------HTCSEEEES
T ss_pred HHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHH-------------cCCCEEEEC
Confidence 44444442 799998888888999999999 999988763
No 163
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=61.90 E-value=93 Score=30.12 Aligned_cols=99 Identities=9% Similarity=0.063 Sum_probs=56.4
Q ss_pred cEEEEEeC-CHHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEE
Q 008254 18 LRVLLLDQ-DSSAAAELKFKLEAMDYIVSTF--YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (572)
Q Consensus 18 lRVLVVDD-D~~~~~~L~~lL~~~gy~V~ta--~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIi 93 (572)
+++++.+. +....+.++.++.... .|... -...+....+.. .|++|+.- |.-++|.+. .+|||+
T Consensus 239 ~~~i~~~g~~~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~----ad~~v~~s-------g~~~lEA~a~G~Pvi~ 306 (375)
T 3beo_A 239 VQVVYPVHMNPVVRETANDILGDYG-RIHLIEPLDVIDFHNVAAR----SYLMLTDS-------GGVQEEAPSLGVPVLV 306 (375)
T ss_dssp EEEEEECCSCHHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHHT----CSEEEECC-------HHHHHHHHHHTCCEEE
T ss_pred eEEEEeCCCCHHHHHHHHHHhhccC-CEEEeCCCCHHHHHHHHHh----CcEEEECC-------CChHHHHHhcCCCEEE
Confidence 45444432 2333445555443222 23321 233455555554 57777532 333667665 899987
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
....+... +.+. .| .++++.+ +.++|.+++..++.
T Consensus 307 ~~~~~~~~---e~v~-------------~g-~g~~v~~-d~~~la~~i~~ll~ 341 (375)
T 3beo_A 307 LRDTTERP---EGIE-------------AG-TLKLAGT-DEETIFSLADELLS 341 (375)
T ss_dssp CSSCCSCH---HHHH-------------TT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred ecCCCCCc---eeec-------------CC-ceEEcCC-CHHHHHHHHHHHHh
Confidence 63323322 2345 78 8899876 99999999988875
No 164
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=61.86 E-value=39 Score=34.79 Aligned_cols=106 Identities=16% Similarity=0.158 Sum_probs=72.1
Q ss_pred cEEEEEeC--CH------------HHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHhhcCCCCe----eEEEEeCCCCC
Q 008254 18 LRVLLLDQ--DS------------SAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENF----HVAIVEVTTSN 75 (572)
Q Consensus 18 lRVLVVDD--D~------------~~~~~L~~lL~~~gy--~V~ta~--~a~EAL~~L~e~~~~p----DLVIvDv~mPd 75 (572)
.+++|+.+ .+ ...+.|+.+++..|. .|.... +.++..+.+.. . |++|+=-. ..
T Consensus 295 ~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~----a~~~~dv~v~pS~-~E 369 (499)
T 2r60_A 295 NLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAY----LASKGSVFALTSF-YE 369 (499)
T ss_dssp EEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHH----HHHTTCEEEECCS-CB
T ss_pred eEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHh----cCcCCCEEEECcc-cC
Confidence 47788887 21 127788888887654 344333 45777777776 5 88886433 23
Q ss_pred CCChHHHHHHhc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 76 TDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 76 ~mdG~~lLe~Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
.-|..++|.+. .+|||.... + -+.+.+. .|..+++..|-+.++|.++|..++.
T Consensus 370 -g~~~~~lEAma~G~PvI~s~~-~---g~~e~v~-------------~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 370 -PFGLAPVEAMASGLPAVVTRN-G---GPAEILD-------------GGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp -CCCSHHHHHHHTTCCEEEESS-B---HHHHHTG-------------GGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred -CCCcHHHHHHHcCCCEEEecC-C---CHHHHhc-------------CCceEEEeCCCCHHHHHHHHHHHHh
Confidence 35678888886 899986542 2 2333334 6778899999999999999988874
No 165
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=61.19 E-value=11 Score=37.43 Aligned_cols=105 Identities=10% Similarity=0.082 Sum_probs=60.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIIT 94 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiL 94 (572)
.+++|+.+.+ ....++.+++..+. .|......++..+.+.. .|++|+-.. .+ .-|..++|.+. .+|||..
T Consensus 242 ~~l~i~G~g~-~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~----adv~v~ps~-~e-~~~~~~~EAma~G~PvI~~ 314 (394)
T 2jjm_A 242 AKLLLVGDGP-EFCTILQLVKNLHIEDRVLFLGKQDNVAELLAM----SDLMLLLSE-KE-SFGLVLLEAMACGVPCIGT 314 (394)
T ss_dssp CEEEEECCCT-THHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHT----CSEEEECCS-CC-SCCHHHHHHHHTTCCEEEE
T ss_pred CEEEEECCch-HHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHh----CCEEEeccc-cC-CCchHHHHHHhcCCCEEEe
Confidence 4555555433 23344444444332 22222222333344433 577776443 23 35778888876 8998865
Q ss_pred eCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 95 SNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 95 S~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
...+-.+ .++.|-.+++..|-+.++|.+++..++.
T Consensus 315 ~~~~~~e-----------------~v~~~~~g~~~~~~d~~~la~~i~~l~~ 349 (394)
T 2jjm_A 315 RVGGIPE-----------------VIQHGDTGYLCEVGDTTGVADQAIQLLK 349 (394)
T ss_dssp CCTTSTT-----------------TCCBTTTEEEECTTCHHHHHHHHHHHHH
T ss_pred cCCChHH-----------------HhhcCCceEEeCCCCHHHHHHHHHHHHc
Confidence 4322111 1225778999999999999999988875
No 166
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=60.69 E-value=68 Score=30.34 Aligned_cols=76 Identities=11% Similarity=0.196 Sum_probs=50.9
Q ss_pred CHHHHHHHhhcCCCCee-EEEEeCCCCCCCCh--HHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccC
Q 008254 49 NENEALSAFSDKPENFH-VAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQL 122 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~pD-LVIvDv~mPd~mdG--~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~ 122 (572)
+..+.++.+.+ ..++ +++.++.-.+...| ++++++++ ++|||.-.+....+.+.+++. .
T Consensus 152 ~~~e~~~~~~~--~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~-------------~ 216 (253)
T 1thf_D 152 LLRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFL-------------A 216 (253)
T ss_dssp EHHHHHHHHHH--TTCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHH-------------T
T ss_pred CHHHHHHHHHH--CCCCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-------------c
Confidence 35565666655 4567 44455543221223 77888886 799999988888899999888 9
Q ss_pred CccEEEeC------CCCHHHHHH
Q 008254 123 GAVEFLRK------PLSEDKLRN 139 (572)
Q Consensus 123 GA~dYL~K------Pvs~eeL~~ 139 (572)
||+++++= +++.+++..
T Consensus 217 Gadgv~vGsal~~~~~~~~~~~~ 239 (253)
T 1thf_D 217 GADAALAASVFHFREIDVRELKE 239 (253)
T ss_dssp TCSEEEESHHHHTTCSCHHHHHH
T ss_pred CChHHHHHHHHHcCCCCHHHHHH
Confidence 99988763 445544444
No 167
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=60.58 E-value=25 Score=34.66 Aligned_cols=33 Identities=9% Similarity=0.025 Sum_probs=20.2
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCCCEEEEECC
Q 008254 17 GLRVLLLDQ----DSSAAAELKFKLEAMDYIVSTFYN 49 (572)
Q Consensus 17 ~lRVLVVDD----D~~~~~~L~~lL~~~gy~V~ta~~ 49 (572)
|+|||++-. +..-...|...|.+.|++|+.++.
T Consensus 4 M~~il~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~ 40 (402)
T 3ia7_A 4 QRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTT 40 (402)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEEeCCCCcccccHHHHHHHHHhCCCEEEEEcC
Confidence 457777743 233344566667777888776654
No 168
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=59.18 E-value=15 Score=36.21 Aligned_cols=73 Identities=18% Similarity=0.074 Sum_probs=49.2
Q ss_pred CCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCC-C---CCCChHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHH
Q 008254 41 DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTT-S---NTDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIAIMV 111 (572)
Q Consensus 41 gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~m-P---d~mdG~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~ 111 (572)
|+.+. ++.+.+++..+... ..|+|+.=... . + ..+.++++.++ ++|||+..+..+.+.+.+++.
T Consensus 126 g~~vi~~~~~~~~~a~~~~~~---gad~v~~~~~~~Gt~~~-~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~--- 198 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEEL---GVHAIMPGASPIGSGQG-ILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAME--- 198 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHHH---TCSCBEECSSSTTCCCC-CSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHH---
T ss_pred CeEEEEEcCCCHHHHHHHHHh---CCCEEEECCcccCCCCC-CCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHH---
Confidence 66554 55577666555544 45666330100 1 1 22466777775 899999999999999999999
Q ss_pred hhhhccccccCCccEEEeC
Q 008254 112 MNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 112 ~~~~~~~~~~~GA~dYL~K 130 (572)
.||+++++=
T Consensus 199 ----------~GAdgViVG 207 (264)
T 1xm3_A 199 ----------LGADGVLLN 207 (264)
T ss_dssp ----------TTCSEEEES
T ss_pred ----------cCCCEEEEc
Confidence 999998874
No 169
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=58.70 E-value=1.3e+02 Score=31.33 Aligned_cols=96 Identities=11% Similarity=0.081 Sum_probs=62.1
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCCCCC-----------CC
Q 008254 17 GLRVLLLDQ----DSSAAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT-----------DG 78 (572)
Q Consensus 17 ~lRVLVVDD----D~~~~~~L~~lL~~~-gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~-----------md 78 (572)
+..++.+|- .....+.++.+-+.. +..|. .+.+.++|..+... ..|.|++... ++. ..
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a---GaD~I~Vg~g-~G~~~~tr~~~g~g~p 187 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASC---GADIIKAGIG-GGSVCSTRIKTGFGVP 187 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT---TCSEEEECCS-SSSCHHHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc---CCCEEEEcCC-CCcCccccccCCccHH
Confidence 456788863 223333444333332 44444 47899998887766 6899988543 220 11
Q ss_pred hHHHHHHhcCC--cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 79 SFKFLETAKDL--PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 79 G~~lLe~Irdl--PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
.+..+..+.+. |||.--+..+...+.+++. +||+...+
T Consensus 188 ~l~aI~~~~~~~~PVIAdGGI~~~~di~kALa-------------~GAd~V~i 227 (361)
T 3r2g_A 188 MLTCIQDCSRADRSIVADGGIKTSGDIVKALA-------------FGADFVMI 227 (361)
T ss_dssp HHHHHHHHTTSSSEEEEESCCCSHHHHHHHHH-------------TTCSEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCCCCHHHHHHHHH-------------cCCCEEEE
Confidence 24445555433 9998888889999999999 99988876
No 170
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=58.64 E-value=51 Score=26.49 Aligned_cols=73 Identities=10% Similarity=0.135 Sum_probs=49.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEe
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMD-YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~g-y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS 95 (572)
+++|+|+.- -.+-..+...|...| ++|+.+....+.++.+.. .....+..|+. +.-.+.+.+...-+|+.+
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~--~~~~~~~~d~~-----~~~~~~~~~~~~d~vi~~ 76 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR--MGVATKQVDAK-----DEAGLAKALGGFDAVISA 76 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT--TTCEEEECCTT-----CHHHHHHHTTTCSEEEEC
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh--CCCcEEEecCC-----CHHHHHHHHcCCCEEEEC
Confidence 568999999 777777888888888 888877666666666655 45666666653 223344445566666665
Q ss_pred CC
Q 008254 96 NI 97 (572)
Q Consensus 96 ~~ 97 (572)
..
T Consensus 77 ~~ 78 (118)
T 3ic5_A 77 AP 78 (118)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 171
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=58.29 E-value=57 Score=30.89 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=50.9
Q ss_pred HHHHHHHhhcCCCCee-EEEEeCCCCCCCCh--HHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCC
Q 008254 50 ENEALSAFSDKPENFH-VAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLG 123 (572)
Q Consensus 50 a~EAL~~L~e~~~~pD-LVIvDv~mPd~mdG--~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~G 123 (572)
..+.++.+.+ ..++ +++.++.-.+...| ++++++++ ++|||...+..+.+.+.++++ .|
T Consensus 154 ~~e~~~~~~~--~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~-------------~G 218 (252)
T 1ka9_F 154 AVEWAVKGVE--LGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQ-------------AG 218 (252)
T ss_dssp HHHHHHHHHH--HTCCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-------------TT
T ss_pred HHHHHHHHHH--cCCCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHH-------------CC
Confidence 3455555544 3456 55565543221233 78888886 799999999888899988888 89
Q ss_pred ccEEEeC------CCCHHHHHH
Q 008254 124 AVEFLRK------PLSEDKLRN 139 (572)
Q Consensus 124 A~dYL~K------Pvs~eeL~~ 139 (572)
|++.++= +++.++++.
T Consensus 219 adgv~vgsal~~~~~~~~~~~~ 240 (252)
T 1ka9_F 219 AEAALAASVFHFGEIPIPKLKR 240 (252)
T ss_dssp CSEEEESHHHHTTSSCHHHHHH
T ss_pred CHHHHHHHHHHcCCCCHHHHHH
Confidence 9998763 566666655
No 172
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=58.29 E-value=28 Score=39.57 Aligned_cols=113 Identities=11% Similarity=0.040 Sum_probs=71.5
Q ss_pred ccEEEEE----eCCHHHHHH----HHHHHHhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEeCCCCC---CCChH-H
Q 008254 17 GLRVLLL----DQDSSAAAE----LKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSN---TDGSF-K 81 (572)
Q Consensus 17 ~lRVLVV----DDD~~~~~~----L~~lL~~~gy~V~t---a~~a~EAL~~L~e~~~~pDLVIvDv~mPd---~mdG~-~ 81 (572)
..+||+. |-+..=... +..+|+..||+|+- .-..++.++.+.+ ..+|+|.+-..|.. .+..+ +
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~E--edADVVGLSsLLTt~dihL~~Mke 679 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIE--LKADAILASTIISHDDIHYKNMKR 679 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHH--TTCSEEEEECCCCGGGHHHHHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccCchhhHHHHHH
Confidence 4577776 334333322 25789999999983 4588999999999 89999999877764 12222 2
Q ss_pred HHHHhc-----C-CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHHH
Q 008254 82 FLETAK-----D-LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVHK 147 (572)
Q Consensus 82 lLe~Ir-----d-lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlrr 147 (572)
+++.++ + ++|| +-+..-.... +-. .||+.|..-.....++...|...++.
T Consensus 680 vIelLrE~GlrDkIkVI-VGGa~~tqd~--Ake-------------IGADa~f~DATeAVeVA~~Ll~~l~e 735 (763)
T 3kp1_A 680 IHELAVEKGIRDKIMIG-CGGTQVTPEV--AVK-------------QGVDAGFGRGSKGIHVATFLVKKRRE 735 (763)
T ss_dssp HHHHHHHTTCTTTSEEE-EECTTCCHHH--HHT-------------TTCSEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEE-EECCCCCHHH--HHH-------------cCCcEEECCcchHHHHHHHHHHHHHH
Confidence 444443 2 4444 4443222221 223 99999999888887777766555544
No 173
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=58.26 E-value=71 Score=32.63 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=54.2
Q ss_pred HhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCC----CC-----------CChHHHHHHhc---CCcEEEEeCCC
Q 008254 38 EAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS----NT-----------DGSFKFLETAK---DLPTIITSNIH 98 (572)
Q Consensus 38 ~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mP----d~-----------mdG~~lLe~Ir---dlPVIiLS~~~ 98 (572)
+..|..|. .+.+.++|..+... ..|.|+++-... +. .+.+++++.++ ++|||+.-+..
T Consensus 142 ~~~g~~v~~~v~t~~~a~~a~~~---GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~ 218 (369)
T 3bw2_A 142 RRAGTLTLVTATTPEEARAVEAA---GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIM 218 (369)
T ss_dssp HHTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCC
T ss_pred HHCCCeEEEECCCHHHHHHHHHc---CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCC
Confidence 34566544 67788887766654 589998854211 10 12278888875 79999888888
Q ss_pred ChHHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 99 CLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 99 d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
+.+.+.+++. .||+.+.+
T Consensus 219 ~~~~~~~~l~-------------~GAd~V~v 236 (369)
T 3bw2_A 219 RGGQIAAVLA-------------AGADAAQL 236 (369)
T ss_dssp SHHHHHHHHH-------------TTCSEEEE
T ss_pred CHHHHHHHHH-------------cCCCEEEE
Confidence 9999999999 99988766
No 174
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=58.06 E-value=19 Score=32.35 Aligned_cols=52 Identities=19% Similarity=0.207 Sum_probs=32.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh--CCCEEEEECC--HHHHHHHhhcCCCCeeEEEEeCC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEA--MDYIVSTFYN--ENEALSAFSDKPENFHVAIVEVT 72 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~--~gy~V~ta~~--a~EAL~~L~e~~~~pDLVIvDv~ 72 (572)
.+.+|++||-|+.. .+...+.. .++.+..+.. ..++++.+++ .+|+||+|.-
T Consensus 29 ~g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~---~yD~viiD~~ 84 (206)
T 4dzz_A 29 SGYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAASEKDVYGIRKDLA---DYDFAIVDGA 84 (206)
T ss_dssp TTCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCSHHHHHTHHHHTT---TSSEEEEECC
T ss_pred CCCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCcHHHHHHHHHhcC---CCCEEEEECC
Confidence 46799999988543 34444443 3567776654 2334444443 6999999973
No 175
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=58.04 E-value=41 Score=31.76 Aligned_cols=59 Identities=12% Similarity=0.085 Sum_probs=45.8
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHhhcC---CCCeeEEEEeCC
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDK---PENFHVAIVEVT 72 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~-ta~~a~EAL~~L~e~---~~~pDLVIvDv~ 72 (572)
+|.+.+|..||-++...+..+..++..|+ .|. ...++.+.+..+... ...||+|++|..
T Consensus 92 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~ 156 (237)
T 3c3y_A 92 IPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDAD 156 (237)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCc
Confidence 45567999999999999999999998876 344 667888887766310 157999999964
No 176
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=57.75 E-value=57 Score=32.92 Aligned_cols=79 Identities=19% Similarity=0.137 Sum_probs=57.0
Q ss_pred HHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCC----CCChHHHHHHhc---CCcEEEEeCCCChHHHHHH
Q 008254 35 FKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN----TDGSFKFLETAK---DLPTIITSNIHCLSTMMKC 106 (572)
Q Consensus 35 ~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd----~mdG~~lLe~Ir---dlPVIiLS~~~d~~~~~ka 106 (572)
..++..+..|. .+.+.++|..+... ..|.|+++-.-.+ ....++++..++ ++|||+-.+..+.+.+.++
T Consensus 118 ~~l~~~g~~v~~~v~s~~~a~~a~~~---GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~a 194 (326)
T 3bo9_A 118 RELKENGTKVIPVVASDSLARMVERA---GADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAA 194 (326)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHH
T ss_pred HHHHHcCCcEEEEcCCHHHHHHHHHc---CCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHH
Confidence 44455565554 57788888776654 5888888642222 023577787775 7999999999889999999
Q ss_pred HHHHHhhhhccccccCCccEEEe
Q 008254 107 IAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 107 i~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
+. +||+++.+
T Consensus 195 l~-------------~GA~gV~v 204 (326)
T 3bo9_A 195 FA-------------LGAEAVQM 204 (326)
T ss_dssp HH-------------HTCSEEEE
T ss_pred HH-------------hCCCEEEe
Confidence 99 99998876
No 177
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=57.43 E-value=12 Score=34.77 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEEC---------------CHH----HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHH
Q 008254 25 QDSSAAAELKFKLEAMDYIVSTFY---------------NEN----EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLET 85 (572)
Q Consensus 25 DD~~~~~~L~~lL~~~gy~V~ta~---------------~a~----EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~ 85 (572)
.+......+...|+..| .|.+.. +.. .-++.++. .|+||.++.-++...++++--.
T Consensus 16 e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~----aD~vvA~l~~~d~Gt~~EiG~A 90 (152)
T 4fyk_A 16 EDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQ----ADVVVAEVTQPSLGVGYELGRA 90 (152)
T ss_dssp TTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHH----CSEEEEECSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHH----CCEEEEeCCCCCCCHHHHHHHH
Confidence 34467788899999988 563211 111 12334444 6999999987763334665544
Q ss_pred h-cCCcEEEEeCCC---ChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 86 A-KDLPTIITSNIH---CLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 86 I-rdlPVIiLS~~~---d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
. ...|||++.... ..+.|+++.. .| ..|-++....++|..++...+.
T Consensus 91 ~algkPV~~l~~~~~~~~ls~mi~G~~-------------~~-~~~~~~~Y~~~el~~il~~f~~ 141 (152)
T 4fyk_A 91 VALGKPILCLFRPQSGRVLSAMIRGAA-------------DG-SRFQVWDYAEGEVETMLDRYFE 141 (152)
T ss_dssp HHTTCCEEEEECGGGSCCCCHHHHHHC-------------CS-SSEEEEECCTTCHHHHHHHHHC
T ss_pred HHcCCeEEEEEeCCccchhHHHHcCCC-------------CC-CeEEEEEecHHHHHHHHHHHHH
Confidence 4 389999987743 5566666654 33 4566677766778776665544
No 178
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=57.32 E-value=25 Score=27.02 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=37.4
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCCHHHHhhhCCCCCCHHHHHHhhhhhh
Q 008254 332 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYR 382 (572)
Q Consensus 332 r~~Wt~eLh~~Fv~av~~lG~~~a~Pk~il~lM~v~glt~~~v~SHLQkyr 382 (572)
|-.||+|=..++++||+++|..+ =+.|-+.| +|=|..+++.|-++|-
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~~~--W~~Ia~~~--~~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGFGN--WQDVANQM--CTKTKEECEKHYMKYF 54 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCTTC--HHHHHHHH--TTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCc--HHHHHHHh--CCCCHHHHHHHHHHHc
Confidence 44799999999999999999532 25566666 6889999998887764
No 179
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=57.11 E-value=42 Score=34.30 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=42.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~-gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd 75 (572)
+.+|.+||=++.+.+..++.+... +-.|. ...++.+.+..+.. ..||+||+|...+.
T Consensus 113 ~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~--~~fDvIi~D~~~~~ 171 (317)
T 3gjy_A 113 QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTP--ASRDVIIRDVFAGA 171 (317)
T ss_dssp TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCT--TCEEEEEECCSTTS
T ss_pred CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccC--CCCCEEEECCCCcc
Confidence 348999999999999988887643 22343 67888887765544 67999999986553
No 180
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=56.69 E-value=11 Score=38.44 Aligned_cols=55 Identities=13% Similarity=0.047 Sum_probs=44.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
+-++.+||-++...+.|+.-++...-..+...|+.++|..+...+.+||+|++|=
T Consensus 113 ~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP 167 (283)
T 2oo3_A 113 QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP 167 (283)
T ss_dssp TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence 4689999999999999999887744344467788999988766445799999995
No 181
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=56.15 E-value=41 Score=34.00 Aligned_cols=95 Identities=13% Similarity=0.117 Sum_probs=60.0
Q ss_pred HHHHHhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCCh-----HHHHHHhc----C-CcEEEEeCCCChH
Q 008254 34 KFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGS-----FKFLETAK----D-LPTIITSNIHCLS 101 (572)
Q Consensus 34 ~~lL~~~gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG-----~~lLe~Ir----d-lPVIiLS~~~d~~ 101 (572)
.+.|.+.||.|. +..|...| +.+.+ -.+++| +.+..|- ..| .++++.++ + +|||+=.+....+
T Consensus 117 a~~L~k~Gf~Vlpy~~~D~~~a-k~l~~--~G~~aV-mPlg~pI-GsG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tps 191 (268)
T 2htm_A 117 AERLIEEDFLVLPYMGPDLVLA-KRLAA--LGTATV-MPLAAPI-GSGWGVRTRALLELFAREKASLPPVVVDAGLGLPS 191 (268)
T ss_dssp HHHHHHTTCEECCEECSCHHHH-HHHHH--HTCSCB-EEBSSST-TTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHH
T ss_pred HHHHHHCCCEEeeccCCCHHHH-HHHHh--cCCCEE-EecCccC-cCCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHH
Confidence 334446699887 33455444 44444 356666 5544432 122 33455443 6 9999988889999
Q ss_pred HHHHHHHHHHhhhhccccccCCccEEEe-----CCCCHHHHHHHHHHHHH
Q 008254 102 TMMKCIAIMVMNQLFDNNFQLGAVEFLR-----KPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 102 ~~~kai~~~~~~~~~~~~~~~GA~dYL~-----KPvs~eeL~~~~q~Vlr 146 (572)
.+..+++ +||++.++ |--++..+...+..++.
T Consensus 192 DAa~Ame-------------LGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 228 (268)
T 2htm_A 192 HAAEVME-------------LGLDAVLVNTAIAEAQDPPAMAEAFRLAVE 228 (268)
T ss_dssp HHHHHHH-------------TTCCEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHH-------------cCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 9999999 99999986 44445555555555544
No 182
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=55.74 E-value=19 Score=36.52 Aligned_cols=112 Identities=14% Similarity=0.119 Sum_probs=58.9
Q ss_pred cccCCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcC
Q 008254 10 AWKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKD 88 (572)
Q Consensus 10 ~~~~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ird 88 (572)
.++.|++++||.||.--..-...+...|...+++++ .+....+..+.+.+. ....-+. .+--++|+. .+
T Consensus 19 ~~~~Mm~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~-~~~~~~~--------~~~~~ll~~-~~ 88 (361)
T 3u3x_A 19 YFQSMMDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAV-YADARRI--------ATAEEILED-EN 88 (361)
T ss_dssp -------CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHH-SSSCCEE--------SCHHHHHTC-TT
T ss_pred hhhhhccCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHH-cCCCccc--------CCHHHHhcC-CC
Confidence 456677789999999764443445555556788876 444333333333331 1110011 122233322 13
Q ss_pred CcEEEEeCC--CChHHHHHHHHHHHhhhhccccccCCccEEEeCCC--CHHHHHHHHHHH
Q 008254 89 LPTIITSNI--HCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDKLRNLWQHV 144 (572)
Q Consensus 89 lPVIiLS~~--~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~eeL~~~~q~V 144 (572)
+-+|+++.. ...+.+.+|++ .|..=|+-||+ +.++...+++.+
T Consensus 89 vD~V~I~tp~~~H~~~~~~al~-------------aGkhVl~EKPla~~~~ea~~l~~~a 135 (361)
T 3u3x_A 89 IGLIVSAAVSSERAELAIRAMQ-------------HGKDVLVDKPGMTSFDQLAKLRRVQ 135 (361)
T ss_dssp CCEEEECCCHHHHHHHHHHHHH-------------TTCEEEEESCSCSSHHHHHHHHHHH
T ss_pred CCEEEEeCChHHHHHHHHHHHH-------------CCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 555555443 33566777777 99999999997 667777655533
No 183
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=55.42 E-value=83 Score=31.23 Aligned_cols=105 Identities=13% Similarity=0.081 Sum_probs=64.7
Q ss_pred ccEEEEEeCC----HHHHHHHHHHHHhCCC--EEEEEC-----CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHH
Q 008254 17 GLRVLLLDQD----SSAAAELKFKLEAMDY--IVSTFY-----NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLET 85 (572)
Q Consensus 17 ~lRVLVVDDD----~~~~~~L~~lL~~~gy--~V~ta~-----~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~ 85 (572)
..+++|+.+. +.....++.+.+..+. .|.... +.++..+.+.. .|++|+--.. . .-|..++|.
T Consensus 262 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~----ad~~v~ps~~-E-~~~~~~lEA 335 (416)
T 2x6q_A 262 GVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRA----SDVILQMSIR-E-GFGLTVTEA 335 (416)
T ss_dssp TCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHH----CSEEEECCSS-C-SSCHHHHHH
T ss_pred CeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHh----CCEEEECCCc-C-CCccHHHHH
Confidence 4678888776 3344555555554432 344322 23456666665 5777764332 3 357788888
Q ss_pred hc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 86 AK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 86 Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
+. .+|||.... .-+.+.+. .|..+++.. +.++|.+++..++.
T Consensus 336 ma~G~PvI~~~~----~g~~e~i~-------------~~~~g~l~~--d~~~la~~i~~ll~ 378 (416)
T 2x6q_A 336 MWKGKPVIGRAV----GGIKFQIV-------------DGETGFLVR--DANEAVEVVLYLLK 378 (416)
T ss_dssp HHTTCCEEEESC----HHHHHHCC-------------BTTTEEEES--SHHHHHHHHHHHHH
T ss_pred HHcCCCEEEccC----CCChhhee-------------cCCCeEEEC--CHHHHHHHHHHHHh
Confidence 76 899886432 22333333 677899986 89999998888875
No 184
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=55.33 E-value=1.7e+02 Score=29.99 Aligned_cols=96 Identities=9% Similarity=0.054 Sum_probs=62.7
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCEE--EEECCHHHHHHHhhcCCCCeeEEEEeCCCCCC-----------CC
Q 008254 17 GLRVLLLD----QDSSAAAELKFKLEAM-DYIV--STFYNENEALSAFSDKPENFHVAIVEVTTSNT-----------DG 78 (572)
Q Consensus 17 ~lRVLVVD----DD~~~~~~L~~lL~~~-gy~V--~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~-----------md 78 (572)
+..++.++ +.....+.++.+-+.. +..| ..+.+.++|..+... ..|.|++-.. ++. ..
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a---GaD~I~v~~g-~G~~~~~r~~~g~~~p 207 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILS---GADIIKVGIG-PGSVCTTRKKTGVGYP 207 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTBCHHHHHCBCCC
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCcCccccCCCCcc
Confidence 45667676 3334555566555554 4433 368889999888776 6898877432 110 11
Q ss_pred hHHHHHHh----c--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 79 SFKFLETA----K--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 79 G~~lLe~I----r--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
-+..+..+ . ++|||.-.+..+...+.+|+. +||+...+
T Consensus 208 ~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAla-------------lGA~~V~v 251 (351)
T 2c6q_A 208 QLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFG-------------AGADFVML 251 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHH-------------TTCSEEEE
T ss_pred HHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHH-------------cCCCceec
Confidence 23333333 1 699999889999999999999 99997754
No 185
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=54.94 E-value=21 Score=32.83 Aligned_cols=116 Identities=14% Similarity=0.126 Sum_probs=67.8
Q ss_pred cCCCCccEEEEEeCCH-----H-HHHHHHHHHHhCCCEEEE---E---------C---CH----HHHHHHhhcCCCCeeE
Q 008254 12 KDFPKGLRVLLLDQDS-----S-AAAELKFKLEAMDYIVST---F---------Y---NE----NEALSAFSDKPENFHV 66 (572)
Q Consensus 12 ~~~p~~lRVLVVDDD~-----~-~~~~L~~lL~~~gy~V~t---a---------~---~a----~EAL~~L~e~~~~pDL 66 (572)
..++++++|-|....- . ..+.+...|+..| .|.+ + . +. ..-++.+++ .|+
T Consensus 6 ~~~~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~----aD~ 80 (165)
T 2khz_A 6 SGEQAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQ----ADV 80 (165)
T ss_dssp CSSCCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHH----CSE
T ss_pred CCCCCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHh----CCE
Confidence 3456678999985433 1 4578888898888 7731 0 0 11 122345555 699
Q ss_pred EEEeCCCCCCCChHHHHHHh-cCCcEEEEeCCC---ChHHHHHHHHHHHhhhhccccccC-CccEEEeCCCCHHHHHHHH
Q 008254 67 AIVEVTTSNTDGSFKFLETA-KDLPTIITSNIH---CLSTMMKCIAIMVMNQLFDNNFQL-GAVEFLRKPLSEDKLRNLW 141 (572)
Q Consensus 67 VIvDv~mPd~mdG~~lLe~I-rdlPVIiLS~~~---d~~~~~kai~~~~~~~~~~~~~~~-GA~dYL~KPvs~eeL~~~~ 141 (572)
||.++.-++...++++--.. ...|||++.... ..+.|..+.. . ....++. ++.++|...+
T Consensus 81 vva~~~~~d~Gt~~EiGyA~algKPVi~l~~~~~~~~~n~M~~g~~-------------~~~~~~~~~--y~~~el~~~l 145 (165)
T 2khz_A 81 VVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAA-------------DGSRFQVWD--YAEGEVETML 145 (165)
T ss_dssp EEEECSSCCHHHHHHHHHHHHTCSSEEEEECTTTTCCCCHHHHHTC-------------CSSSEEEEE--CCTTTHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHCCCEEEEEEcCCCCCcchhhhcccC-------------ccceeEEEe--cCHHHHHHHH
Confidence 99988744412235554333 389999997655 2334433322 1 1233333 3788888877
Q ss_pred HHHHHH
Q 008254 142 QHVVHK 147 (572)
Q Consensus 142 q~Vlrr 147 (572)
...+..
T Consensus 146 ~~~~~~ 151 (165)
T 2khz_A 146 DRYFEA 151 (165)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 776653
No 186
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=54.42 E-value=25 Score=33.45 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=30.4
Q ss_pred HHHHHHhc---CCcEEEEeCCCC------hHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHH
Q 008254 80 FKFLETAK---DLPTIITSNIHC------LSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLR 138 (572)
Q Consensus 80 ~~lLe~Ir---dlPVIiLS~~~d------~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~ 138 (572)
+++++.++ ++||++++.... .+.+..++. .||+..++-....++..
T Consensus 69 ~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~-------------~Gad~v~~~~~~~~~~~ 123 (248)
T 1geq_A 69 FWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKA-------------SGVDGILVVDLPVFHAK 123 (248)
T ss_dssp HHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHH-------------HTCCEEEETTCCGGGHH
T ss_pred HHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHH-------------CCCCEEEECCCChhhHH
Confidence 66777776 689998874222 244445555 99999999665555443
No 187
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=54.18 E-value=74 Score=32.03 Aligned_cols=78 Identities=14% Similarity=0.064 Sum_probs=55.0
Q ss_pred HHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCC----CCChHHHHHHhc---CCcEEEEeCCCChHHHHHHH
Q 008254 36 KLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN----TDGSFKFLETAK---DLPTIITSNIHCLSTMMKCI 107 (572)
Q Consensus 36 lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd----~mdG~~lLe~Ir---dlPVIiLS~~~d~~~~~kai 107 (572)
.++..|+.|. .+.+.++|..+... ..|.|+++-.-.+ ....++++..++ ++|||+..+..+.+.+.+++
T Consensus 105 ~l~~~g~~v~~~v~~~~~a~~~~~~---GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al 181 (332)
T 2z6i_A 105 RFHEAGIIVIPVVPSVALAKRMEKI---GADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGF 181 (332)
T ss_dssp HHHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHH
T ss_pred HHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH
Confidence 3444566554 56777777665544 5888888632111 023477888875 79999998888899999999
Q ss_pred HHHHhhhhccccccCCccEEEe
Q 008254 108 AIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 108 ~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
. .||+...+
T Consensus 182 ~-------------~GAdgV~v 190 (332)
T 2z6i_A 182 M-------------LGAEAVQV 190 (332)
T ss_dssp H-------------TTCSEEEE
T ss_pred H-------------cCCCEEEe
Confidence 9 99988765
No 188
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=53.12 E-value=1.1e+02 Score=31.52 Aligned_cols=99 Identities=8% Similarity=0.063 Sum_probs=56.3
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEE
Q 008254 18 LRVLLL-DQDSSAAAELKFKLEAMDYIVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (572)
Q Consensus 18 lRVLVV-DDD~~~~~~L~~lL~~~gy~V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIi 93 (572)
++++++ .+++..++.++..+... -.|..+. ...+...++.. .|++|++- +|.. +|... .+|+|+
T Consensus 258 ~~~v~~~~~~~~~~~~l~~~~~~~-~~v~l~~~l~~~~~~~l~~~----ad~vv~~S------Gg~~-~EA~a~g~PvV~ 325 (403)
T 3ot5_A 258 TELVYPMHLNPAVREKAMAILGGH-ERIHLIEPLDAIDFHNFLRK----SYLVFTDS------GGVQ-EEAPGMGVPVLV 325 (403)
T ss_dssp EEEEEECCSCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHHH----EEEEEECC------HHHH-HHGGGTTCCEEE
T ss_pred ceEEEecCCCHHHHHHHHHHhCCC-CCEEEeCCCCHHHHHHHHHh----cCEEEECC------ccHH-HHHHHhCCCEEE
Confidence 455554 45555555555544322 1233222 33455555554 57777542 2444 45544 899998
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
+-...+... .+. .| ..+++.+ +.++|.+++..++.
T Consensus 326 ~~~~~~~~e---~v~-------------~g-~~~lv~~-d~~~l~~ai~~ll~ 360 (403)
T 3ot5_A 326 LRDTTERPE---GIE-------------AG-TLKLIGT-NKENLIKEALDLLD 360 (403)
T ss_dssp CCSSCSCHH---HHH-------------HT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred ecCCCcchh---hee-------------CC-cEEEcCC-CHHHHHHHHHHHHc
Confidence 733333332 244 67 5677765 89999999888875
No 189
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=52.66 E-value=39 Score=28.79 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=35.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
+.+|+|+.--. +-..+...|...|+.|+.+..-.+.++.+.+ ..+.++..|.
T Consensus 6 ~~~v~I~G~G~-iG~~la~~L~~~g~~V~~id~~~~~~~~~~~--~~~~~~~gd~ 57 (141)
T 3llv_A 6 RYEYIVIGSEA-AGVGLVRELTAAGKKVLAVDKSKEKIELLED--EGFDAVIADP 57 (141)
T ss_dssp CCSEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--TTCEEEECCT
T ss_pred CCEEEEECCCH-HHHHHHHHHHHCCCeEEEEECCHHHHHHHHH--CCCcEEECCC
Confidence 35788888754 6666777777778888877666666666665 4555555554
No 190
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=52.59 E-value=44 Score=31.97 Aligned_cols=58 Identities=9% Similarity=0.076 Sum_probs=46.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHhh-----cCCCCeeEEEEeCCC
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFS-----DKPENFHVAIVEVTT 73 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~-ta~~a~EAL~~L~-----e~~~~pDLVIvDv~m 73 (572)
+|.+.+|..||-++...+..+..++..|+ .|. ...++.+.+..+. . ..||+|++|...
T Consensus 101 ~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~--~~fD~V~~d~~~ 166 (247)
T 1sui_A 101 IPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNH--GSYDFIFVDADK 166 (247)
T ss_dssp SCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGT--TCBSEEEECSCS
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCC--CCEEEEEEcCch
Confidence 45567999999999999999999998876 344 6678888877663 3 579999999753
No 191
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=52.55 E-value=33 Score=30.72 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=41.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
++.+|.++.... ....|...+...+..+..+.+..+++++|.. +++|+++.|.
T Consensus 110 ~g~~v~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--G~vDa~~~~~ 162 (239)
T 1lst_A 110 KGKHVGVLQGST-QEAYANDNWRTKGVDVVAYANQDLIYSDLTA--GRLDAALQDE 162 (239)
T ss_dssp TTCEEEEETTSH-HHHHHHHHTGGGTCEEEEESSHHHHHHHHHT--TSCSEEEEEH
T ss_pred CCCEEEEEcCcc-HHHHHHHhcccCCCeEEEcCCHHHHHHHHHc--CCCCEEEeCc
Confidence 456888776554 4455666665557899999999999999999 8999999874
No 192
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=52.42 E-value=1.1e+02 Score=27.94 Aligned_cols=95 Identities=9% Similarity=-0.017 Sum_probs=56.0
Q ss_pred cEEEEEeCCH--HHHHHHHHHHHhCCCEEEE----ECCHHHHHHHhhcCCCCeeEEEEeCCCC----CCCChHHHHHHhc
Q 008254 18 LRVLLLDQDS--SAAAELKFKLEAMDYIVST----FYNENEALSAFSDKPENFHVAIVEVTTS----NTDGSFKFLETAK 87 (572)
Q Consensus 18 lRVLVVDDD~--~~~~~L~~lL~~~gy~V~t----a~~a~EAL~~L~e~~~~pDLVIvDv~mP----d~mdG~~lLe~Ir 87 (572)
...+++.+.. .....+...+++.|..+.. ..+..+.++.+.+ ...|+|.++.... . ..+++.+++++
T Consensus 78 ad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~--~g~d~i~v~~g~~g~~~~-~~~~~~i~~l~ 154 (211)
T 3f4w_A 78 ADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEE--AGADMLAVHTGTDQQAAG-RKPIDDLITML 154 (211)
T ss_dssp CSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH--HTCCEEEEECCHHHHHTT-CCSHHHHHHHH
T ss_pred CCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH--cCCCEEEEcCCCcccccC-CCCHHHHHHHH
Confidence 3455555543 3345566666666765543 2344444444444 4578877763210 1 12456666664
Q ss_pred ----CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 88 ----DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 88 ----dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
++||++..+.. .+.+.++++ .||+.+++
T Consensus 155 ~~~~~~~i~~~gGI~-~~~~~~~~~-------------~Gad~vvv 186 (211)
T 3f4w_A 155 KVRRKARIAVAGGIS-SQTVKDYAL-------------LGPDVVIV 186 (211)
T ss_dssp HHCSSCEEEEESSCC-TTTHHHHHT-------------TCCSEEEE
T ss_pred HHcCCCcEEEECCCC-HHHHHHHHH-------------cCCCEEEE
Confidence 67887766664 777878877 99998865
No 193
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=52.32 E-value=31 Score=33.86 Aligned_cols=37 Identities=19% Similarity=0.037 Sum_probs=22.4
Q ss_pred ccCCCCccEEEEEeCCH--------HHHHHHHHHHHhCCCEEEEE
Q 008254 11 WKDFPKGLRVLLLDQDS--------SAAAELKFKLEAMDYIVSTF 47 (572)
Q Consensus 11 ~~~~p~~lRVLVVDDD~--------~~~~~L~~lL~~~gy~V~ta 47 (572)
...+.++||||++-+.. .....|...|.+.||+|..+
T Consensus 14 ~~~~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 58 (406)
T 2gek_A 14 LVPRGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVL 58 (406)
T ss_dssp -------CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 44566778999998642 35566777788889988744
No 194
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=51.67 E-value=98 Score=33.44 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=63.9
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCCCCC----------CCh
Q 008254 17 GLRVLLLDQ----DSSAAAELKFKLEAMD-YIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT----------DGS 79 (572)
Q Consensus 17 ~lRVLVVDD----D~~~~~~L~~lL~~~g-y~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~----------mdG 79 (572)
+..+++||. .....+.++.+-+..+ ..|. .+.+.++|..+... ..|.|++...--.. ...
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a---Gad~i~vg~g~gsi~~~~~~~g~g~p~ 344 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA---GANVVKVGIGPGSICTTRVVAGVGVPQ 344 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTCCHHHHHCCCCCH
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh---CCCEEEECCCCccccccccccCCCCCc
Confidence 566777773 3344455555555543 3333 67788888887766 57888874321000 112
Q ss_pred HHHHHHh----c--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 80 FKFLETA----K--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 80 ~~lLe~I----r--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
+..+..+ + ++|||.--+..+...+.+|+. +||+..++=
T Consensus 345 ~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala-------------~GA~~V~vG 388 (511)
T 3usb_A 345 LTAVYDCATEARKHGIPVIADGGIKYSGDMVKALA-------------AGAHVVMLG 388 (511)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHH-------------TTCSEEEES
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHH-------------hCchhheec
Confidence 4444443 2 599999889999999999999 999998874
No 195
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=51.44 E-value=28 Score=33.63 Aligned_cols=57 Identities=16% Similarity=0.027 Sum_probs=38.2
Q ss_pred CccEEEEEeCC--------------------HHHHHHHHHHHHhCCCEEEEECCHH-----------------HHHHHhh
Q 008254 16 KGLRVLLLDQD--------------------SSAAAELKFKLEAMDYIVSTFYNEN-----------------EALSAFS 58 (572)
Q Consensus 16 ~~lRVLVVDDD--------------------~~~~~~L~~lL~~~gy~V~ta~~a~-----------------EAL~~L~ 58 (572)
++||||++-.. ......|...|.+.|++|..+.... ...+.++
T Consensus 2 ~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 81 (342)
T 2iuy_A 2 RPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWLR 81 (342)
T ss_dssp -CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCSTTEEECSCCSHHHHHHHHH
T ss_pred CccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCCcceeccCCcHHHHHHHHH
Confidence 45899999877 2355667778888899998766432 3455555
Q ss_pred cCCCCeeEEEEeCCCC
Q 008254 59 DKPENFHVAIVEVTTS 74 (572)
Q Consensus 59 e~~~~pDLVIvDv~mP 74 (572)
+ ..||+|++....+
T Consensus 82 ~--~~~Dvi~~~~~~~ 95 (342)
T 2iuy_A 82 T--ADVDVVHDHSGGV 95 (342)
T ss_dssp H--CCCSEEEECSSSS
T ss_pred h--cCCCEEEECCchh
Confidence 5 5778777755443
No 196
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=51.29 E-value=59 Score=30.88 Aligned_cols=66 Identities=11% Similarity=0.020 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCCEEEEECC-----HH---HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCCC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN-----EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIH 98 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~-----a~---EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~~ 98 (572)
+...++..++..||.+..+.. .+ ++++.+.. ..+|.||+--..++ .....++.++ .+|||++....
T Consensus 21 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~--~~~~~~~~~~~~giPvV~~~~~~ 96 (297)
T 3rot_A 21 LFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALA--TYPSGIATTIPSDT--AFSKSLQRANKLNIPVIAVDTRP 96 (297)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHH--TCCSEEEECCCCSS--TTHHHHHHHHHHTCCEEEESCCC
T ss_pred HHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHH--cCCCEEEEeCCCHH--HHHHHHHHHHHCCCCEEEEcCCC
Confidence 455666777777998876552 22 45666666 57898887432222 2255677665 89999986543
No 197
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=50.93 E-value=45 Score=30.12 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=45.0
Q ss_pred ccccCCCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 9 SAWKDFPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 9 s~~~~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
..++++ ++.+|.+. ........+..++...|. .+..+.+..+++.++.. ++.|+++.+.
T Consensus 141 ~~~~dL-~g~~i~~~-~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~--g~vDa~~~~~ 201 (259)
T 2v25_A 141 KSLADM-KGANIGVA-QAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDA--KRVDAFSVDK 201 (259)
T ss_dssp CSGGGC-TTCEEEEE-TTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHT--TSSSEEEEEH
T ss_pred CCHHHh-CCCEEEEe-cCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHc--CCCcEEEecH
Confidence 345555 46687776 445566777888877765 77789999999999999 8999999875
No 198
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=50.09 E-value=76 Score=30.03 Aligned_cols=80 Identities=19% Similarity=0.244 Sum_probs=54.7
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh---
Q 008254 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDYI--VS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--- 86 (572)
Q Consensus 13 ~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~--V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I--- 86 (572)
.+|.+.+|..||-++...+..+..++..|.. |. ...++.+.+..+.. ...||+|++|...++ -..+++.+
T Consensus 84 ~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~-~~~fD~V~~d~~~~~---~~~~l~~~~~~ 159 (248)
T 3tfw_A 84 ELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGE-CPAFDLIFIDADKPN---NPHYLRWALRY 159 (248)
T ss_dssp TSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCS-CCCCSEEEECSCGGG---HHHHHHHHHHT
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCC-CCCeEEEEECCchHH---HHHHHHHHHHh
Confidence 4555679999999999999999999887752 44 67788777765532 147999999875433 33445443
Q ss_pred -cCCcEEEEeC
Q 008254 87 -KDLPTIITSN 96 (572)
Q Consensus 87 -rdlPVIiLS~ 96 (572)
+.--+|++..
T Consensus 160 LkpGG~lv~~~ 170 (248)
T 3tfw_A 160 SRPGTLIIGDN 170 (248)
T ss_dssp CCTTCEEEEEC
T ss_pred cCCCeEEEEeC
Confidence 3334555544
No 199
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=49.96 E-value=61 Score=30.12 Aligned_cols=74 Identities=16% Similarity=0.167 Sum_probs=51.4
Q ss_pred CCEE-EEECCHHHHHHHhhcCCCCeeEEEEeCC-C----CCC---CChHHHHHHhc---CCcEEEEeCCCChHHHHHHHH
Q 008254 41 DYIV-STFYNENEALSAFSDKPENFHVAIVEVT-T----SNT---DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIA 108 (572)
Q Consensus 41 gy~V-~ta~~a~EAL~~L~e~~~~pDLVIvDv~-m----Pd~---mdG~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~ 108 (572)
+..+ ..+.+.+++..+... ..|+|.+... . .+. ..+++++++++ ++|||...+..+.+.+.++++
T Consensus 119 ~~~v~~~~~t~~e~~~~~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~~~~~~~~~~~ 195 (223)
T 1y0e_A 119 NVEIMADIATVEEAKNAARL---GFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMD 195 (223)
T ss_dssp TSEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHH
T ss_pred CceEEecCCCHHHHHHHHHc---CCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecCCCCHHHHHHHHH
Confidence 5544 367788888776554 5788765321 0 110 12355677775 799999988889999999999
Q ss_pred HHHhhhhccccccCCccEEEeC
Q 008254 109 IMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 109 ~~~~~~~~~~~~~~GA~dYL~K 130 (572)
.||+.+++=
T Consensus 196 -------------~Gad~v~vG 204 (223)
T 1y0e_A 196 -------------LGVHCSVVG 204 (223)
T ss_dssp -------------TTCSEEEEC
T ss_pred -------------cCCCEEEEC
Confidence 999988874
No 200
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=49.27 E-value=80 Score=29.83 Aligned_cols=78 Identities=8% Similarity=0.014 Sum_probs=46.2
Q ss_pred CccEEEEEeCC---H---HHHHHHHHHHHhCCCEEEE-EC---CHH---HHHHHhhcCCCCeeEEEEeCCCCCCCChHHH
Q 008254 16 KGLRVLLLDQD---S---SAAAELKFKLEAMDYIVST-FY---NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKF 82 (572)
Q Consensus 16 ~~lRVLVVDDD---~---~~~~~L~~lL~~~gy~V~t-a~---~a~---EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~l 82 (572)
++.+|.+|-.+ + .+...+...+++.||.+.. +. +.+ ++++.+.. ..+|.||+--..+. ...+.
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~--~~~~~ 78 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIA--KNPAGIAISAIDPV--ELTDT 78 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHH--HCCSEEEECCSSTT--TTHHH
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHH--hCCCEEEEcCCCHH--HHHHH
Confidence 34455555432 2 3456677777778998876 32 332 45566666 57898887432222 23456
Q ss_pred HHHhc--CCcEEEEeCC
Q 008254 83 LETAK--DLPTIITSNI 97 (572)
Q Consensus 83 Le~Ir--dlPVIiLS~~ 97 (572)
++.+. .+|||++...
T Consensus 79 ~~~~~~~~iPvV~~~~~ 95 (305)
T 3g1w_A 79 INKAVDAGIPIVLFDSG 95 (305)
T ss_dssp HHHHHHTTCCEEEESSC
T ss_pred HHHHHHCCCcEEEECCC
Confidence 77664 7999988664
No 201
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=49.12 E-value=55 Score=32.07 Aligned_cols=81 Identities=14% Similarity=0.233 Sum_probs=47.0
Q ss_pred HHHHhhcCCCCeeEEEEeCCCCCC-CC--------------------hHHHHHHhc----CCcEEEEeCCCChHHHHHHH
Q 008254 53 ALSAFSDKPENFHVAIVEVTTSNT-DG--------------------SFKFLETAK----DLPTIITSNIHCLSTMMKCI 107 (572)
Q Consensus 53 AL~~L~e~~~~pDLVIvDv~mPd~-md--------------------G~~lLe~Ir----dlPVIiLS~~~d~~~~~kai 107 (572)
.++.|.+ ...|+|.+++-..+. .| .+++++.++ ++|+++|+-... +.. .
T Consensus 36 ~~~~l~~--~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~---v~~-~ 109 (262)
T 2ekc_A 36 AFKEVLK--NGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNP---IFR-I 109 (262)
T ss_dssp HHHHHHH--TTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHH---HHH-H
T ss_pred HHHHHHH--cCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcH---HHH-h
Confidence 3445555 578999888755431 12 345566665 689999854321 110 0
Q ss_pred HHHHhhhhccccccCCccEEEeCCCCHHHHHHHHH
Q 008254 108 AIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQ 142 (572)
Q Consensus 108 ~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q 142 (572)
-+.+++..+.+.|++++++=.+..+++...++
T Consensus 110 ---g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~ 141 (262)
T 2ekc_A 110 ---GLEKFCRLSREKGIDGFIVPDLPPEEAEELKA 141 (262)
T ss_dssp ---CHHHHHHHHHHTTCCEEECTTCCHHHHHHHHH
T ss_pred ---hHHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Confidence 00122333444999999998888777665443
No 202
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=49.12 E-value=13 Score=36.03 Aligned_cols=106 Identities=15% Similarity=0.145 Sum_probs=64.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEE--ECCHHHHHHHhhcCCCCeeEEEEeCC---------CCCCCChHHHHHH
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVST--FYNENEALSAFSDKPENFHVAIVEVT---------TSNTDGSFKFLET 85 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~t--a~~a~EAL~~L~e~~~~pDLVIvDv~---------mPd~mdG~~lLe~ 85 (572)
.++++|+.+.+ ....++.+.+..+-.|.. .-+..+..+.+.. .|++|+=.. ... .-|..++|.
T Consensus 188 ~~~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adv~v~ps~~~~~~~~~~~~E-~~~~~~~EA 261 (342)
T 2iuy_A 188 GRRLVLAGPAW-EPEYFDEITRRYGSTVEPIGEVGGERRLDLLAS----AHAVLAMSQAVTGPWGGIWCE-PGATVVSEA 261 (342)
T ss_dssp TCCEEEESCCC-CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHH----CSEEEECCCCCCCTTCSCCCC-CCCHHHHHH
T ss_pred CcEEEEEeCcc-cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHh----CCEEEECCccccccccccccc-CccHHHHHH
Confidence 35677777643 233444444433333332 3345555666666 577776433 123 357888888
Q ss_pred hc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccC--CccEEEeCCCCHHHHHHHHHHHHH
Q 008254 86 AK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQL--GAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 86 Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~--GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
+. .+|||.... +. +.+.+. . |-.+++..| +.++|.+++..++.
T Consensus 262 ma~G~PvI~s~~-~~---~~e~~~-------------~~~~~~g~~~~~-d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 262 AVSGTPVVGTGN-GC---LAEIVP-------------SVGEVVGYGTDF-APDEARRTLAGLPA 307 (342)
T ss_dssp HHTTCCEEECCT-TT---HHHHGG-------------GGEEECCSSSCC-CHHHHHHHHHTSCC
T ss_pred HhcCCCEEEcCC-CC---hHHHhc-------------ccCCCceEEcCC-CHHHHHHHHHHHHH
Confidence 86 899885443 33 223333 5 778899999 99999998877654
No 203
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=48.91 E-value=76 Score=28.40 Aligned_cols=118 Identities=19% Similarity=0.216 Sum_probs=0.0
Q ss_pred ccEEEEE--eCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCe---eEEEEeCCCCCCCChHHHHHHhc--CC
Q 008254 17 GLRVLLL--DQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENF---HVAIVEVTTSNTDGSFKFLETAK--DL 89 (572)
Q Consensus 17 ~lRVLVV--DDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~p---DLVIvDv~mPd~mdG~~lLe~Ir--dl 89 (572)
|+||+++ |.|..-+..--.-++..|..|.++.+-++.-+-+++-..++ |+|++=..--. .=.-+|++..+ .+
T Consensus 26 gvrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvvivttddk-ewikdfieeakergv 104 (162)
T 2l82_A 26 GVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIVTTDDK-EWIKDFIEEAKERGV 104 (162)
T ss_dssp TCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEEECCCH-HHHHHHHHHHHHTTC
T ss_pred CeEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEEecCcH-HHHHHHHHHHHhcCc
Q ss_pred cEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCC-CHHHHHHHHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL-SEDKLRNLWQHVVHK 147 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv-s~eeL~~~~q~Vlrr 147 (572)
-|.++-++.+.+...+|-. +...++.=+..+ +.++|...++..+++
T Consensus 105 evfvvynnkdddrrkeaqq------------efrsdgvdvrtvsdkeelieqvrrfvrk 151 (162)
T 2l82_A 105 EVFVVYNNKDDDRRKEAQQ------------EFRSDGVDVRTVSDKEELIEQVRRFVRK 151 (162)
T ss_dssp EEEEEEECSCHHHHHHHHH------------HHCCSSCEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCchhHHHHHH------------HhhhcCceeeecCCHHHHHHHHHHHHHH
No 204
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=48.77 E-value=1.2e+02 Score=34.89 Aligned_cols=108 Identities=13% Similarity=0.110 Sum_probs=73.4
Q ss_pred ccEEEEEeCCH----------HHHHHHHHHHHhCCC--EEEEEC---C---HHHHHHHhhcCCCCeeEEEEeCCCCCCCC
Q 008254 17 GLRVLLLDQDS----------SAAAELKFKLEAMDY--IVSTFY---N---ENEALSAFSDKPENFHVAIVEVTTSNTDG 78 (572)
Q Consensus 17 ~lRVLVVDDD~----------~~~~~L~~lL~~~gy--~V~ta~---~---a~EAL~~L~e~~~~pDLVIvDv~mPd~md 78 (572)
.++++||.+.. .....|..+++..+. .|.... + .++..+.+.. ..|++|+=-.. . .-
T Consensus 603 ~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~---aaDvfV~PS~~-E-gf 677 (816)
T 3s28_A 603 LANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICD---TKGAFVQPALY-E-AF 677 (816)
T ss_dssp HCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHH---TTCEEEECCSC-B-SS
T ss_pred CeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHh---cCeEEEECCCc-c-Cc
Confidence 36788888876 366778888887764 455443 2 2555566653 24777764332 3 36
Q ss_pred hHHHHHHhc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 79 SFKFLETAK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 79 G~~lLe~Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
|+.+++.+. .+|||.. ..+... +.+. .|..+++..|-+.++|.++|..++.
T Consensus 678 glvllEAMA~G~PVIas-d~GG~~---EiV~-------------dg~~Gllv~p~D~e~LA~aI~~lL~ 729 (816)
T 3s28_A 678 GLTVVEAMTCGLPTFAT-CKGGPA---EIIV-------------HGKSGFHIDPYHGDQAADTLADFFT 729 (816)
T ss_dssp CHHHHHHHHTTCCEEEE-SSBTHH---HHCC-------------BTTTBEEECTTSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCEEEe-CCCChH---HHHc-------------cCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 788888886 8999874 444332 2223 7889999999999999999987773
No 205
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=48.60 E-value=60 Score=29.60 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=45.8
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHhhcCC--CCeeEEEEeCC
Q 008254 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDYI--VS-TFYNENEALSAFSDKP--ENFHVAIVEVT 72 (572)
Q Consensus 13 ~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~--V~-ta~~a~EAL~~L~e~~--~~pDLVIvDv~ 72 (572)
.++.+.+|..||-++...+..+..++..+.. |. ...++.+.+..+.... ..||+|++|..
T Consensus 85 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~ 149 (225)
T 3tr6_A 85 ALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD 149 (225)
T ss_dssp TCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC
T ss_pred hCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCC
Confidence 3555789999999999999999999887652 44 6778888877665211 36999999875
No 206
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=48.59 E-value=7.3 Score=36.21 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=33.9
Q ss_pred E-EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008254 19 R-VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (572)
Q Consensus 19 R-VLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIv 69 (572)
| |+|||........+.+.|++.|+.+..+...+..++.+.. ..+|.||+
T Consensus 2 ~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dglil 51 (195)
T 1qdl_B 2 DLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIER--IDPDRLII 51 (195)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHH--HCCSEEEE
T ss_pred CEEEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhh--CCCCEEEE
Confidence 5 9999987777778889999999987766543222333333 24787776
No 207
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=48.52 E-value=72 Score=29.06 Aligned_cols=81 Identities=20% Similarity=0.258 Sum_probs=54.5
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHhhcCC-CCeeEEEEeCCCCCCCChHHHHHHh--
Q 008254 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKP-ENFHVAIVEVTTSNTDGSFKFLETA-- 86 (572)
Q Consensus 13 ~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~-ta~~a~EAL~~L~e~~-~~pDLVIvDv~mPd~mdG~~lLe~I-- 86 (572)
.+|.+.+|..||-++...+..+..+...|. .|. ...++.+.+..+.... ..||+|++|...+. -..+++.+
T Consensus 79 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~~---~~~~l~~~~~ 155 (223)
T 3duw_A 79 GLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQN---NPAYFEWALK 155 (223)
T ss_dssp TCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGGG---HHHHHHHHHH
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcHH---HHHHHHHHHH
Confidence 455567999999999999999999988775 243 6778888777665311 35999999875332 23444443
Q ss_pred --cCCcEEEEeC
Q 008254 87 --KDLPTIITSN 96 (572)
Q Consensus 87 --rdlPVIiLS~ 96 (572)
+.--+|++..
T Consensus 156 ~L~pgG~lv~~~ 167 (223)
T 3duw_A 156 LSRPGTVIIGDN 167 (223)
T ss_dssp TCCTTCEEEEES
T ss_pred hcCCCcEEEEeC
Confidence 3233555543
No 208
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=48.14 E-value=63 Score=27.84 Aligned_cols=14 Identities=0% Similarity=0.330 Sum_probs=7.1
Q ss_pred cEEEEEeCCHHHHH
Q 008254 18 LRVLLLDQDSSAAA 31 (572)
Q Consensus 18 lRVLVVDDD~~~~~ 31 (572)
..|.++|.++...+
T Consensus 31 ~~v~vid~~~~~~~ 44 (140)
T 3fwz_A 31 IPLVVIETSRTRVD 44 (140)
T ss_dssp CCEEEEESCHHHHH
T ss_pred CCEEEEECCHHHHH
Confidence 45555555554433
No 209
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=48.01 E-value=22 Score=28.87 Aligned_cols=44 Identities=18% Similarity=0.405 Sum_probs=35.5
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCCHH---HHhhhCCCCCCHHHHHHhhhhhh
Q 008254 334 DWTPELHKKFVQAVEQLGVDQAIPSR---ILELMKVEGLTRHNVASHLQKYR 382 (572)
Q Consensus 334 ~Wt~eLh~~Fv~av~~lG~~~a~Pk~---il~lM~v~glt~~~v~SHLQkyr 382 (572)
.||.|=++.|.+|+.+++. -+|.+ |-+.| |=|-++|+.|-+++.
T Consensus 10 ~WT~eE~k~fe~al~~~p~--~t~~RW~~IA~~l---gRt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 10 EWTEEDLSQLTRSMVKFPG--GTPGRWEKIAHEL---GRSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCHHHHHHHHHHHHHSCT--TCTTHHHHHHHHH---TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCC--CCCcHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 7999999999999999983 35665 55555 689999999877664
No 210
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=47.79 E-value=55 Score=30.71 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~---a~---EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
+...+...+++.||.+..+.. .+ +.++.+.. ..+|.||+-...+. .-.++++.+. .+|||++...
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~--~~~~~~~~~~~~~iPvV~~~~~ 98 (293)
T 3l6u_A 26 LINAFKAEAKANKYEALVATSQNSRISEREQILEFVH--LKVDAIFITTLDDV--YIGSAIEEAKKAGIPVFAIDRM 98 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHH--TTCSEEEEECSCTT--TTHHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEecCChH--HHHHHHHHHHHcCCCEEEecCC
Confidence 456677777788998875442 22 46666666 67898887543222 2236667664 8999998654
No 211
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=47.00 E-value=62 Score=30.05 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=44.6
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEE----eCCCCC---CCChHHHHHHhc---C-CcEEEEeCCCChHHHHHHHHHHHhhh
Q 008254 46 TFYNENEALSAFSDKPENFHVAIV----EVTTSN---TDGSFKFLETAK---D-LPTIITSNIHCLSTMMKCIAIMVMNQ 114 (572)
Q Consensus 46 ta~~a~EAL~~L~e~~~~pDLVIv----Dv~mPd---~mdG~~lLe~Ir---d-lPVIiLS~~~d~~~~~kai~~~~~~~ 114 (572)
.+.+..++...... .+|.|++ +..... ...|+++++.++ + +|||+.-+.. .+.+.+++.
T Consensus 122 s~~t~~e~~~a~~~---g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~------ 191 (227)
T 2tps_A 122 SAHTMSEVKQAEED---GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQ------ 191 (227)
T ss_dssp EECSHHHHHHHHHH---TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHH------
T ss_pred ecCCHHHHHHHHhC---CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHH------
Confidence 46788887665544 6899886 321111 123677777775 5 9998877766 677777777
Q ss_pred hccccccCCccEEEe
Q 008254 115 LFDNNFQLGAVEFLR 129 (572)
Q Consensus 115 ~~~~~~~~GA~dYL~ 129 (572)
.||+++.+
T Consensus 192 -------~Ga~gv~v 199 (227)
T 2tps_A 192 -------AGADGVSM 199 (227)
T ss_dssp -------TTCSEEEE
T ss_pred -------cCCCEEEE
Confidence 89888765
No 212
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=46.75 E-value=21 Score=35.70 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=47.0
Q ss_pred CccEEEEEeCC-----HHHHHHHHHHHHhCC-CEEEEECCHH-----HHHHHhhcCCCCeeEEEEeCCCCCCCCh--HH-
Q 008254 16 KGLRVLLLDQD-----SSAAAELKFKLEAMD-YIVSTFYNEN-----EALSAFSDKPENFHVAIVEVTTSNTDGS--FK- 81 (572)
Q Consensus 16 ~~lRVLVVDDD-----~~~~~~L~~lL~~~g-y~V~ta~~a~-----EAL~~L~e~~~~pDLVIvDv~mPd~mdG--~~- 81 (572)
+.++||||.-. ......|..+|++.| |+|.++.+.. +.+ ...-..+|+||++..+.. .+. .+
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f---~~~L~~~D~vV~~~~~~~-l~~~~~~~ 78 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGF---VLDFSPYQLVVLDYNGDS-WPEETNRR 78 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTC---CCCCTTCSEEEECCCSSC-CCHHHHHH
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHH---hhhhhcCCEEEEeCCCCc-CCHHHHHH
Confidence 45899999762 567789999999988 9999876631 222 111146999998775433 222 11
Q ss_pred HHHHhc-CCcEEEE
Q 008254 82 FLETAK-DLPTIIT 94 (572)
Q Consensus 82 lLe~Ir-dlPVIiL 94 (572)
|.+.++ ...+|.+
T Consensus 79 l~~yV~~Ggglv~~ 92 (281)
T 4e5v_A 79 FLEYVQNGGGVVIY 92 (281)
T ss_dssp HHHHHHTTCEEEEE
T ss_pred HHHHHHcCCCEEEE
Confidence 223333 4666666
No 213
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=46.41 E-value=25 Score=34.89 Aligned_cols=50 Identities=26% Similarity=0.371 Sum_probs=41.6
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCCHHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 008254 330 KMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 384 (572)
Q Consensus 330 k~r~~Wt~eLh~~Fv~av~~lG~~~a~Pk~il~lM~v~glt~~~v~SHLQkyr~~ 384 (572)
|..-.||+|=+..|++|+...|-+ =..|-++ |++=|..+|++|.++||..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKD---W~~IAk~--VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRD---FQAISDV--IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSC---HHHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcC---HHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 456689999999999999999954 3456665 6789999999999999854
No 214
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=45.84 E-value=60 Score=29.65 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=44.7
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHhhcCC--CCeeEEEEeCC
Q 008254 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKP--ENFHVAIVEVT 72 (572)
Q Consensus 13 ~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~-ta~~a~EAL~~L~e~~--~~pDLVIvDv~ 72 (572)
.++.+.+|..+|-++...+..+..++..|. .|. ...++.+.+..+.... ..||+|++|..
T Consensus 90 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~ 154 (229)
T 2avd_A 90 ALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD 154 (229)
T ss_dssp TSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC
Confidence 345567999999999999999999988765 343 5678877776654311 36999999864
No 215
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=45.65 E-value=40 Score=33.20 Aligned_cols=89 Identities=16% Similarity=0.111 Sum_probs=53.9
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHH------------HHHHhhcCCCCeeEEEEe---CC-----
Q 008254 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENE------------ALSAFSDKPENFHVAIVE---VT----- 72 (572)
Q Consensus 13 ~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~E------------AL~~L~e~~~~pDLVIvD---v~----- 72 (572)
.|+++|+|++++.+......+ ..|.+.|++|....-..+ ..+.+. ..|+||+- +.
T Consensus 3 ~~~~~mki~v~~~~~~~~~~~-~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~----~~d~ii~~~~~~~~~~~i 77 (300)
T 2rir_A 3 AMLTGLKIAVIGGDARQLEII-RKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQ----QIDSIILPVSATTGEGVV 77 (300)
T ss_dssp CCCCSCEEEEESBCHHHHHHH-HHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGG----GCSEEECCSSCEETTTEE
T ss_pred ccccCCEEEEECCCHHHHHHH-HHHHhCCCEEEEEeccccccccccceeccchHHHHh----cCCEEEeccccccCCccc
Confidence 356788999999988766655 445778998875531111 112222 47888861 10
Q ss_pred -CC--CCCC---hHHHHHHhcCCcEEEEeCCCChHHHHHHHH
Q 008254 73 -TS--NTDG---SFKFLETAKDLPTIITSNIHCLSTMMKCIA 108 (572)
Q Consensus 73 -mP--d~md---G~~lLe~IrdlPVIiLS~~~d~~~~~kai~ 108 (572)
.+ . .. .-++++.++.+.+|+ ++....+.+..|.+
T Consensus 78 ~s~~a~-~~~~~~~~~l~~~~~l~~i~-~g~~~~d~~~~~~~ 117 (300)
T 2rir_A 78 STVFSN-EEVVLKQDHLDRTPAHCVIF-SGISNAYLENIAAQ 117 (300)
T ss_dssp CBSSCS-SCEECCHHHHHTSCTTCEEE-ESSCCHHHHHHHHH
T ss_pred cccccc-CCccchHHHHhhcCCCCEEE-EecCCHHHHHHHHH
Confidence 00 1 11 246777777777777 77776665666665
No 216
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=44.83 E-value=1e+02 Score=31.96 Aligned_cols=86 Identities=14% Similarity=0.082 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCC---------CCC-CChHHHHHHhc------C
Q 008254 28 SAAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTT---------SNT-DGSFKFLETAK------D 88 (572)
Q Consensus 28 ~~~~~L~~lL~~~-gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~m---------Pd~-mdG~~lLe~Ir------d 88 (572)
...+.++.+-+.. +..|. .+.+.++|..+... ..|.|++-..- .+. ...++.+..+. +
T Consensus 180 ~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~---Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ 256 (404)
T 1eep_A 180 RIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTN 256 (404)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTT---TCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhc---CCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcC
Confidence 3444454444444 55444 56777777766554 68988882100 110 11233343332 6
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 89 LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
+|||...+..+...+.+++. +||+...+
T Consensus 257 ipVia~GGI~~~~d~~~ala-------------~GAd~V~i 284 (404)
T 1eep_A 257 ICIIADGGIRFSGDVVKAIA-------------AGADSVMI 284 (404)
T ss_dssp CEEEEESCCCSHHHHHHHHH-------------HTCSEEEE
T ss_pred ceEEEECCCCCHHHHHHHHH-------------cCCCHHhh
Confidence 99999889899999999999 99998876
No 217
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=44.35 E-value=61 Score=30.96 Aligned_cols=67 Identities=12% Similarity=0.084 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEEC---CH---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 27 SSAAAELKFKLEAMDYIVSTFY---NE---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 27 ~~~~~~L~~lL~~~gy~V~ta~---~a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
..+...++..++..||.+..+. +. .+.++.+.. ..+|.||+.-..+. ...++++.++ .+|||++...
T Consensus 18 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~~~~~ 92 (313)
T 3m9w_A 18 QKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMIN--RGVDVLVIIPYNGQ--VLSNVVKEAKQEGIKVLAYDRM 92 (313)
T ss_dssp HHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEEECSSTT--SCHHHHHHHHTTTCEEEEESSC
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChh--hhHHHHHHHHHCCCeEEEECCc
Confidence 4567778888888999887554 22 245666666 67898887654333 2346677765 7999988654
No 218
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=44.28 E-value=73 Score=31.63 Aligned_cols=106 Identities=11% Similarity=0.123 Sum_probs=57.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEE
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIi 93 (572)
.+++||.||.--..-...+..+.+..+++++ .+....+..+.+.+ .+.+-+. . +--++++. .++-+|+
T Consensus 2 ~~~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~---~~g~~~~----~---~~~~~l~~-~~~D~V~ 70 (344)
T 3euw_A 2 SLTLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAE---ANGAEAV----A---SPDEVFAR-DDIDGIV 70 (344)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH---TTTCEEE----S---SHHHHTTC-SCCCEEE
T ss_pred CCceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH---HcCCcee----C---CHHHHhcC-CCCCEEE
Confidence 3568999999866555545444443477776 45544444444443 1222111 1 12222221 1344555
Q ss_pred EeCCC--ChHHHHHHHHHHHhhhhccccccCCccEEEeCCC--CHHHHHHHHHHH
Q 008254 94 TSNIH--CLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDKLRNLWQHV 144 (572)
Q Consensus 94 LS~~~--d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~eeL~~~~q~V 144 (572)
++... ..+.+..|++ .|..=|+-||+ +.++...+++.+
T Consensus 71 i~tp~~~h~~~~~~al~-------------~gk~v~~EKP~~~~~~~~~~l~~~a 112 (344)
T 3euw_A 71 IGSPTSTHVDLITRAVE-------------RGIPALCEKPIDLDIEMVRACKEKI 112 (344)
T ss_dssp ECSCGGGHHHHHHHHHH-------------TTCCEEECSCSCSCHHHHHHHHHHH
T ss_pred EeCCchhhHHHHHHHHH-------------cCCcEEEECCCCCCHHHHHHHHHHH
Confidence 54433 3456677777 99999999995 556666644433
No 219
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=43.64 E-value=39 Score=32.78 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=39.3
Q ss_pred eeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeCCC--ChH-H-HHHHHHHHHhhhhccccccCCccEEEeCCCC--HHH
Q 008254 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIH--CLS-T-MMKCIAIMVMNQLFDNNFQLGAVEFLRKPLS--EDK 136 (572)
Q Consensus 64 pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~~~--d~~-~-~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs--~ee 136 (572)
.|++|+ |. .|..++|.+. .+|||+....+ +.. . ....+. .|. ++++.+-+ .++
T Consensus 255 ad~~v~----~s--g~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~-------------~g~-g~~~~~~d~~~~~ 314 (364)
T 1f0k_A 255 ADVVVC----RS--GALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEK-------------AGA-AKIIEQPQLSVDA 314 (364)
T ss_dssp CSEEEE----CC--CHHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHH-------------TTS-EEECCGGGCCHHH
T ss_pred CCEEEE----CC--chHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHh-------------CCc-EEEeccccCCHHH
Confidence 466665 23 2778888876 89998764432 111 1 122333 777 99998866 899
Q ss_pred HHHHHHHH
Q 008254 137 LRNLWQHV 144 (572)
Q Consensus 137 L~~~~q~V 144 (572)
|.+++..+
T Consensus 315 la~~i~~l 322 (364)
T 1f0k_A 315 VANTLAGW 322 (364)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhc
Confidence 99888655
No 220
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=43.51 E-value=1.4e+02 Score=32.11 Aligned_cols=97 Identities=13% Similarity=0.217 Sum_probs=63.4
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCCCCC-----------CC
Q 008254 17 GLRVLLLD----QDSSAAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT-----------DG 78 (572)
Q Consensus 17 ~lRVLVVD----DD~~~~~~L~~lL~~~-gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~-----------md 78 (572)
+..++++| ......+.++.+-+.. +..|. .+.+.++|..++.. ..|.|++-+. ++. ..
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~vg~g-~Gs~~~t~~~~g~g~p 316 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA---GADAVKVGIG-PGSICTTRIVAGVGVP 316 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTCHHHHHTCBCCC
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc---CCCEEEECCC-CCcCCCccccCCCCcc
Confidence 45567766 3445556666665555 43343 47888888777665 6888887321 210 11
Q ss_pred hHHHHHHh----c--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 79 SFKFLETA----K--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 79 G~~lLe~I----r--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
.+.++..+ + ++|||.--+..+...+.+++. +||+...+=
T Consensus 317 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~-------------~GAd~V~vG 361 (490)
T 4avf_A 317 QISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMV-------------AGAYCVMMG 361 (490)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHH-------------HTCSEEEEC
T ss_pred HHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHH-------------cCCCeeeec
Confidence 23334433 2 699999888889999999999 999988774
No 221
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=43.32 E-value=1.4e+02 Score=31.79 Aligned_cols=84 Identities=14% Similarity=0.172 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCC--------------CCCCChHHHHHHhc---C
Q 008254 29 AAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTT--------------SNTDGSFKFLETAK---D 88 (572)
Q Consensus 29 ~~~~L~~lL~~~-gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~m--------------Pd~mdG~~lLe~Ir---d 88 (572)
..+.++.+-+.. +.-|. .+.+.++|..+... ..|.|++-..- |. ...+.++..++ +
T Consensus 283 ~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~a---Gad~I~vg~~~G~~~~t~~~~~~g~~~-~~~~~~~~~~~~~~~ 358 (514)
T 1jcn_A 283 QIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDA---GVDGLRVGMGCGSICITQEVMACGRPQ-GTAVYKVAEYARRFG 358 (514)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSCCBTTBCCCSCCCCH-HHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHhCCCCceEecccchHHHHHHHHHc---CCCEEEECCCCCcccccccccCCCccc-hhHHHHHHHHHhhCC
Confidence 345555555554 55444 46778887777665 57877773311 11 11245555554 7
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 89 LPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 89 lPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
+|||..-+..+...+.+++. +||+...+
T Consensus 359 ipVia~GGI~~~~di~kala-------------~GAd~V~i 386 (514)
T 1jcn_A 359 VPIIADGGIQTVGHVVKALA-------------LGASTVMM 386 (514)
T ss_dssp CCEEEESCCCSHHHHHHHHH-------------TTCSEEEE
T ss_pred CCEEEECCCCCHHHHHHHHH-------------cCCCeeeE
Confidence 99999888889999999999 99987765
No 222
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=43.10 E-value=58 Score=32.47 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=21.9
Q ss_pred ccEEEEEeCC----HHHHHHHHHHHHhCCCEEEEECC
Q 008254 17 GLRVLLLDQD----SSAAAELKFKLEAMDYIVSTFYN 49 (572)
Q Consensus 17 ~lRVLVVDDD----~~~~~~L~~lL~~~gy~V~ta~~ 49 (572)
+||||++-.. ..-...|...|++.|++|+.++.
T Consensus 20 ~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 20 HMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES
T ss_pred cCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc
Confidence 4699988643 11234567778888998886654
No 223
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=43.09 E-value=86 Score=29.28 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=44.8
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHhhcCC--CCeeEEEEeCC
Q 008254 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKP--ENFHVAIVEVT 72 (572)
Q Consensus 13 ~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~-ta~~a~EAL~~L~e~~--~~pDLVIvDv~ 72 (572)
.++.+.+|..||-++...+..+..++..|+ .|. ...++.+.+..+.... ..||+|++|..
T Consensus 93 ~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~ 157 (232)
T 3cbg_A 93 QLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDAD 157 (232)
T ss_dssp TSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSC
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCC
Confidence 345567999999999999999998887665 243 6678888777664311 36999999865
No 224
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=42.65 E-value=79 Score=29.98 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=24.4
Q ss_pred ccEEEEEe------CCHHHHHHHHHHHHhCCCEEEEE----CCHHHHHHHhhc
Q 008254 17 GLRVLLLD------QDSSAAAELKFKLEAMDYIVSTF----YNENEALSAFSD 59 (572)
Q Consensus 17 ~lRVLVVD------DD~~~~~~L~~lL~~~gy~V~ta----~~a~EAL~~L~e 59 (572)
+-+|++|+ |.......+.+.|+..|+++... .+.++..+.+.+
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ 79 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK 79 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh
Confidence 45677775 33345566666666666666555 255555555544
No 225
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=42.51 E-value=29 Score=37.81 Aligned_cols=50 Identities=26% Similarity=0.348 Sum_probs=41.4
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCCHHHHhhhCCCCCCHHHHHHhhhhhhhh
Q 008254 330 KMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 384 (572)
Q Consensus 330 k~r~~Wt~eLh~~Fv~av~~lG~~~a~Pk~il~lM~v~glt~~~v~SHLQkyr~~ 384 (572)
|...+||.+=|..|++|+.+.|-+ =+.|-+.++- =|..+|++|-++||..
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGkd---w~~IA~~VgT--KT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGRD---FQAISDVIGN--KSVVQVKNFFVNYRRR 427 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTTC---HHHHHHHHSS--CCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcC---HHHHHHHhCC--CCHHHHHHHHHHHHHH
Confidence 456799999999999999999943 4567777654 4999999999999864
No 226
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=41.95 E-value=1.2e+02 Score=27.99 Aligned_cols=66 Identities=11% Similarity=0.156 Sum_probs=43.9
Q ss_pred CHHHHHHHhhcCCCCeeEEEE-eCCCCCCC--ChHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccC
Q 008254 49 NENEALSAFSDKPENFHVAIV-EVTTSNTD--GSFKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQL 122 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~pDLVIv-Dv~mPd~m--dG~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~ 122 (572)
+..+.++.+.+ ...|.|++ ++...+.. -.+++++.++ ++|||+-.+....+.+.+++. .
T Consensus 155 ~~~e~~~~~~~--~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~-------------~ 219 (253)
T 1h5y_A 155 DAVKWAKEVEE--LGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAA-------------A 219 (253)
T ss_dssp EHHHHHHHHHH--HTCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-------------T
T ss_pred CHHHHHHHHHh--CCCCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH-------------c
Confidence 44555555555 45676654 44432211 1356666665 799999888888888888888 9
Q ss_pred CccEEEe
Q 008254 123 GAVEFLR 129 (572)
Q Consensus 123 GA~dYL~ 129 (572)
||+++++
T Consensus 220 Ga~~v~v 226 (253)
T 1h5y_A 220 GADAVLA 226 (253)
T ss_dssp TCSEEEE
T ss_pred CCcHHHH
Confidence 9998875
No 227
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=41.85 E-value=53 Score=31.39 Aligned_cols=65 Identities=6% Similarity=-0.001 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEeCCCCCCCC-hHHHHHHhcCCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAKDLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~------a~EAL~~L~e~~~~pDLVIvDv~mPd~md-G~~lLe~IrdlPVIiLS~~ 97 (572)
.+...+...+++.||.+..+.. ..+.++.+.. ..+|-||+--.... .. -++.+.. .+|||++...
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~-~~~~~~~l~~--~iPvV~i~~~ 103 (303)
T 3kke_A 32 DMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSE--GRVDGVLLQRREDF-DDDMLAAVLE--GVPAVTINSR 103 (303)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHS--CSSSEEEECCCTTC-CHHHHHHHHT--TSCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh--CCCcEEEEecCCCC-cHHHHHHHhC--CCCEEEECCc
Confidence 4667778888888998775442 2356777777 68888887443333 22 3333333 8999988654
No 228
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=41.65 E-value=1.1e+02 Score=28.69 Aligned_cols=64 Identities=11% Similarity=0.056 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~------a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
.+...+...+++.||.+..+.. ..+.++.+.. ..+|-||+--...+ + ..++.+. .+|||++...
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~--~--~~~~~l~~~~iPvV~~~~~ 96 (287)
T 3bbl_A 25 QFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRS--GNVDGFVLSSINYN--D--PRVQFLLKQKFPFVAFGRS 96 (287)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHT--TCCSEEEECSCCTT--C--HHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHc--CCCCEEEEeecCCC--c--HHHHHHHhcCCCEEEECCc
Confidence 5667778888889998876542 2456777777 67998887432222 1 4455553 7999988653
No 229
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=41.65 E-value=39 Score=33.23 Aligned_cols=88 Identities=13% Similarity=0.078 Sum_probs=52.7
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCH------------HHHHHHhhcCCCCeeEEEEeC---C------
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNE------------NEALSAFSDKPENFHVAIVEV---T------ 72 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a------------~EAL~~L~e~~~~pDLVIvDv---~------ 72 (572)
|.++|+|+|++.+......+ ..|.+.|++|....-. ++..+.+. ..|+||+-. .
T Consensus 2 ~~~~m~i~v~~~~~~~~~~~-~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d~ii~~~~~~~~~~~i~ 76 (293)
T 3d4o_A 2 MLTGKHVVIIGGDARQLEII-RKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWN----TVDAILLPISGTNEAGKVD 76 (293)
T ss_dssp CCTTCEEEEECBCHHHHHHH-HHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGG----GCSEEECCTTCCCTTCBCC
T ss_pred CccCcEEEEECCCHHHHHHH-HHHHhCCCEEEEeccccccccccccccccchHHHHh----cCCEEEeccccccCCceee
Confidence 56778999999998776655 4567789988765321 11122222 478888621 0
Q ss_pred -----CCCCCChHHHHHHhcCCcEEEEeCCCChHHHHHHHH
Q 008254 73 -----TSNTDGSFKFLETAKDLPTIITSNIHCLSTMMKCIA 108 (572)
Q Consensus 73 -----mPd~mdG~~lLe~IrdlPVIiLS~~~d~~~~~kai~ 108 (572)
-+. .=.-++++.+..+.+|+ ++.+..+....+.+
T Consensus 77 ~~~~~~~~-~~~~~~l~~~~~l~~i~-~G~d~id~~~~~~~ 115 (293)
T 3d4o_A 77 TIFSNESI-VLTEEMIEKTPNHCVVY-SGISNTYLNQCMKK 115 (293)
T ss_dssp BSSCSCCC-BCCHHHHHTSCTTCEEE-ESSCCHHHHHHHHH
T ss_pred cccccCCc-cchHHHHHhCCCCCEEE-ecCCCHHHHHHHHH
Confidence 011 01256777777888876 77766554344444
No 230
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=41.61 E-value=60 Score=30.84 Aligned_cols=64 Identities=11% Similarity=0.072 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEC-----CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFY-----NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~-----~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
.+...+...+++.||.+..+. ...+.++.+.. ..+|-||+--.... . +.++.+. .+|||++...
T Consensus 27 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiIi~~~~~~-~---~~~~~l~~~~iPvV~~~~~ 97 (294)
T 3qk7_A 27 EMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVET--RRVDALIVAHTQPE-D---FRLQYLQKQNFPFLALGRS 97 (294)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHH--TCCSEEEECSCCSS-C---HHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHc--CCCCEEEEeCCCCC-h---HHHHHHHhCCCCEEEECCC
Confidence 355667777778899877543 23456777777 67888887443333 2 5566554 7999988654
No 231
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=41.07 E-value=89 Score=29.36 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIH 98 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~~ 98 (572)
.+...++..+++.||.+..+.. . .+.++.+.. ..+|-||+--... ..++++.+. .+|||++....
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~----~~~~~~~~~~~~iPvV~~~~~~ 97 (291)
T 3egc_A 25 EVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFE--RRVDGLILAPSEG----EHDYLRTELPKTFPIVAVNREL 97 (291)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCCSS----CCHHHHHSSCTTSCEEEESSCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEeCCCC----ChHHHHHhhccCCCEEEEeccc
Confidence 3566777778888998876543 2 335666766 6789888643221 335667765 79999887643
No 232
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=40.95 E-value=34 Score=31.14 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=47.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEe
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS 95 (572)
.+++|||..-.-.+-..|...|.+.|++|+.+....+.+..+. ..+.++..|+. + --.+.+.+..+-+|+..
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---~~~~~~~~Dl~--d---~~~~~~~~~~~d~vi~~ 74 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN---EHLKVKKADVS--S---LDEVCEVCKGADAVISA 74 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCC---TTEEEECCCTT--C---HHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhcc---CceEEEEecCC--C---HHHHHHHhcCCCEEEEe
Confidence 4579999999999999999999999999987665443322221 34556666653 2 33344444556666655
Q ss_pred C
Q 008254 96 N 96 (572)
Q Consensus 96 ~ 96 (572)
+
T Consensus 75 a 75 (227)
T 3dhn_A 75 F 75 (227)
T ss_dssp C
T ss_pred C
Confidence 4
No 233
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=40.91 E-value=79 Score=31.28 Aligned_cols=105 Identities=12% Similarity=0.043 Sum_probs=65.7
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCE---------EEEEC--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHH
Q 008254 18 LRVLLLDQDSS-----AAAELKFKLEAMDYI---------VSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFK 81 (572)
Q Consensus 18 lRVLVVDDD~~-----~~~~L~~lL~~~gy~---------V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~ 81 (572)
.+++|+.+.+. +...++.+++..|.. |.... +.++..+.+.. .|++|+=-. .. .-|+.
T Consensus 216 ~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~----adv~v~pS~-~E-~~~~~ 289 (413)
T 3oy2_A 216 AKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNA----CDVIVNCSS-GE-GFGLC 289 (413)
T ss_dssp CCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHH----CSEEEECCS-CC-SSCHH
T ss_pred cEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHh----CCEEEeCCC-cC-CCCcH
Confidence 56777765432 345666666665542 33323 35677777766 578887333 23 35778
Q ss_pred HHHHhc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCcc---------------EE--EeCCCCHHHHHHHHHH
Q 008254 82 FLETAK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAV---------------EF--LRKPLSEDKLRNLWQH 143 (572)
Q Consensus 82 lLe~Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~---------------dY--L~KPvs~eeL~~~~q~ 143 (572)
++|.+. .+|||.... .-+.+.+. .|.. ++ +..|-+.++|.+++ .
T Consensus 290 ~lEAma~G~PvI~s~~----~g~~e~v~-------------~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~ 351 (413)
T 3oy2_A 290 SAEGAVLGKPLIISAV----GGADDYFS-------------GDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-T 351 (413)
T ss_dssp HHHHHTTTCCEEEECC----HHHHHHSC-------------TTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-H
T ss_pred HHHHHHcCCCEEEcCC----CChHHHHc-------------cCcccccccccccccccccCcceeeCCCCHHHHHHHH-H
Confidence 888886 899986432 22333332 4444 77 88899999999999 7
Q ss_pred HHH
Q 008254 144 VVH 146 (572)
Q Consensus 144 Vlr 146 (572)
++.
T Consensus 352 l~~ 354 (413)
T 3oy2_A 352 FFK 354 (413)
T ss_dssp HTT
T ss_pred Hhc
Confidence 764
No 234
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=40.91 E-value=1e+02 Score=28.87 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~---a~---EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
.+...+...+++.||.+..+.. .+ ++++.+.. ..+|-||+-...++ .....++.+. .+|||++...
T Consensus 19 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~--~~~~~~~~~~~~~iPvV~~~~~ 92 (290)
T 2fn9_A 19 VLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIA--AGYDAIIFNPTDAD--GSIANVKRAKEAGIPVFCVDRG 92 (290)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCSCTT--TTHHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEecCChH--HHHHHHHHHHHCCCeEEEEecC
Confidence 3556677778888998875542 32 34666666 57898887432222 2234566553 7999988653
No 235
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=40.89 E-value=1.5e+02 Score=27.62 Aligned_cols=67 Identities=7% Similarity=-0.042 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS~~ 97 (572)
.+...+...+++.||.+..+.. . .+.++.+.. ..+|.||+-....+ ...++.+.....+|||++...
T Consensus 38 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgii~~~~~~~-~~~~~~l~~~~~iPvV~~~~~ 110 (296)
T 3brq_A 38 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLD--LRCDAIMIYPRFLS-VDEIDDIIDAHSQPIMVLNRR 110 (296)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHH--TTCSEEEEECSSSC-HHHHHHHHHTCSSCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh--cCCCEEEEecCCCC-hHHHHHHHhcCCCCEEEEccc
Confidence 4667778888888998876643 2 235666666 57888776432222 122232322147999988653
No 236
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=40.77 E-value=84 Score=29.99 Aligned_cols=67 Identities=10% Similarity=0.162 Sum_probs=46.2
Q ss_pred CHHHHHHHhhcCCCCeeEEEE-eCCCCCCCC--hHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccC
Q 008254 49 NENEALSAFSDKPENFHVAIV-EVTTSNTDG--SFKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQL 122 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~pDLVIv-Dv~mPd~md--G~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~ 122 (572)
+..+.++.+.+ ..++.|++ ++.-.+... .++++++++ ++|||...+..+.+.+.+++. .
T Consensus 157 ~~~e~~~~~~~--~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~-------------~ 221 (266)
T 2w6r_A 157 LLRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFL-------------A 221 (266)
T ss_dssp EHHHHHHHHHH--TTCSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHH-------------H
T ss_pred hHHHHHHHHHH--cCCCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHH-------------c
Confidence 34565555555 45665554 443222112 378888886 799999999999899999888 8
Q ss_pred CccEEEeC
Q 008254 123 GAVEFLRK 130 (572)
Q Consensus 123 GA~dYL~K 130 (572)
||+++++=
T Consensus 222 Gadgv~vg 229 (266)
T 2w6r_A 222 GADAALAA 229 (266)
T ss_dssp TCSEEEES
T ss_pred CCHHHHcc
Confidence 99988774
No 237
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=40.31 E-value=57 Score=30.18 Aligned_cols=76 Identities=9% Similarity=0.092 Sum_probs=51.1
Q ss_pred HHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---C--CcEEEEeCCCChHHHHHHHH
Q 008254 35 FKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---D--LPTIITSNIHCLSTMMKCIA 108 (572)
Q Consensus 35 ~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---d--lPVIiLS~~~d~~~~~kai~ 108 (572)
...+..|..+. .+.+..+++..... .+|+|++ .|....|.+.+++++ . +|||...+.. .+.+.+++.
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~~---G~d~v~v---~~t~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~ 167 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALEA---GAQALKI---FPSSAFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWID 167 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHHT---TCSEEEE---TTHHHHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHH
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHHC---CCCEEEE---ecCCCCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHH
Confidence 44555565432 47888898877554 6898886 221023567777664 3 8888888776 677888888
Q ss_pred HHHhhhhccccccCCccEEEeC
Q 008254 109 IMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 109 ~~~~~~~~~~~~~~GA~dYL~K 130 (572)
.||+++.+=
T Consensus 168 -------------~Ga~gv~vG 176 (212)
T 2v82_A 168 -------------AGCAGAGLG 176 (212)
T ss_dssp -------------HTCSEEEEC
T ss_pred -------------cCCCEEEEC
Confidence 899988754
No 238
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=40.23 E-value=99 Score=31.11 Aligned_cols=136 Identities=9% Similarity=0.035 Sum_probs=71.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~-~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIi 93 (572)
+++||.||.--..-...+..+... .+++++ .+....+..+.+.+. ..+.+-.. .+--++++.- ++-+|+
T Consensus 22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~-~g~~~~~~-------~~~~~ll~~~-~~D~V~ 92 (357)
T 3ec7_A 22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDK-YAIEAKDY-------NDYHDLINDK-DVEVVI 92 (357)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHH-HTCCCEEE-------SSHHHHHHCT-TCCEEE
T ss_pred CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHH-hCCCCeee-------CCHHHHhcCC-CCCEEE
Confidence 358999999987666666666523 478877 444333333333320 12111111 1223344321 344444
Q ss_pred EeCC--CChHHHHHHHHHHHhhhhccccccCCccEEEeCCC--CHHHHHHHHHHHHHHHHhcCCCcccCCCChhHHHHHH
Q 008254 94 TSNI--HCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVS 169 (572)
Q Consensus 94 LS~~--~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~eeL~~~~q~Vlrr~~~~~~~~~~~sLt~RE~eVL~ 169 (572)
++.. ...+.+..|++ .|..=|+-||+ +.++...+++.+-+............++.+.-+.+.+
T Consensus 93 i~tp~~~h~~~~~~al~-------------aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~~v~~~~R~~p~~~~~k~ 159 (357)
T 3ec7_A 93 ITASNEAHADVAVAALN-------------ANKYVFCEKPLAVTAADCQRVIEAEQKNGKRMVQIGFMRRYDKGYVQLKN 159 (357)
T ss_dssp ECSCGGGHHHHHHHHHH-------------TTCEEEEESSSCSSHHHHHHHHHHHHHHTSCCEEEECGGGGSHHHHHHHH
T ss_pred EcCCcHHHHHHHHHHHH-------------CCCCEEeecCccCCHHHHHHHHHHHHHhCCeEEEEeecccCCHHHHHHHH
Confidence 4433 34566777777 99999999997 6677777665443322111000112334555555555
Q ss_pred HHHh
Q 008254 170 MLHL 173 (572)
Q Consensus 170 ll~~ 173 (572)
++..
T Consensus 160 ~i~~ 163 (357)
T 3ec7_A 160 IIDS 163 (357)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5544
No 239
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=40.12 E-value=56 Score=32.51 Aligned_cols=84 Identities=19% Similarity=0.113 Sum_probs=0.0
Q ss_pred cccccccCCCCccEEEEEeCC----HHHHHHHHHHHHhCCCEEEEECCHH------------------------------
Q 008254 6 NDLSAWKDFPKGLRVLLLDQD----SSAAAELKFKLEAMDYIVSTFYNEN------------------------------ 51 (572)
Q Consensus 6 n~~s~~~~~p~~lRVLVVDDD----~~~~~~L~~lL~~~gy~V~ta~~a~------------------------------ 51 (572)
|+-+.-+.-..+||||++-.. ..-...|...|.+.|++|..+....
T Consensus 4 ~~~~~~~~~~~~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 83 (398)
T 4fzr_A 4 HHHSSGVPRGSHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSWDRE 83 (398)
T ss_dssp -----------CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHTTCCEEEEESSCCHHHHHSBCTT
T ss_pred ccccCCCCCCCceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhCCCeeEecCCccchHhhhhhhcc
Q ss_pred ------------------------------HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEe
Q 008254 52 ------------------------------EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (572)
Q Consensus 52 ------------------------------EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS 95 (572)
+..+.+++ .+||+|+.|. . .-...++.+...+|+|.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~pDlVv~d~---~-~~~~~~~a~~~giP~v~~~ 151 (398)
T 4fzr_A 84 GNRTTMPREEKPLLEHIGRGYGRLVLRMRDEALALAER--WKPDLVLTET---Y-SLTGPLVAATLGIPWIEQS 151 (398)
T ss_dssp SCBCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCSEEEEET---T-CTHHHHHHHHHTCCEEEEC
T ss_pred CcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCEEEECc---c-ccHHHHHHHhhCCCEEEec
No 240
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=40.09 E-value=64 Score=27.78 Aligned_cols=73 Identities=12% Similarity=0.082 Sum_probs=48.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh--cCCcEEEEe
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIITS 95 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I--rdlPVIiLS 95 (572)
-+|+|+.-.. +-..+...|...|+.|+.+..-.+.++.+++ ..+.++..|... .++++.+ .+.-+|+++
T Consensus 8 ~~viIiG~G~-~G~~la~~L~~~g~~v~vid~~~~~~~~~~~--~g~~~i~gd~~~------~~~l~~a~i~~ad~vi~~ 78 (140)
T 3fwz_A 8 NHALLVGYGR-VGSLLGEKLLASDIPLVVIETSRTRVDELRE--RGVRAVLGNAAN------EEIMQLAHLECAKWLILT 78 (140)
T ss_dssp SCEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--TTCEEEESCTTS------HHHHHHTTGGGCSEEEEC
T ss_pred CCEEEECcCH-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--cCCCEEECCCCC------HHHHHhcCcccCCEEEEE
Confidence 4799999754 5666777788889999988777777777776 566666655432 2345544 355555555
Q ss_pred CCCC
Q 008254 96 NIHC 99 (572)
Q Consensus 96 ~~~d 99 (572)
...+
T Consensus 79 ~~~~ 82 (140)
T 3fwz_A 79 IPNG 82 (140)
T ss_dssp CSCH
T ss_pred CCCh
Confidence 4443
No 241
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=40.07 E-value=1.8e+02 Score=29.45 Aligned_cols=71 Identities=17% Similarity=0.232 Sum_probs=47.7
Q ss_pred EEEECCHHHHHHHhhcCCCCeeEEEEeCC-------------------------CCC-C--------CChHHHHHHhc--
Q 008254 44 VSTFYNENEALSAFSDKPENFHVAIVEVT-------------------------TSN-T--------DGSFKFLETAK-- 87 (572)
Q Consensus 44 V~ta~~a~EAL~~L~e~~~~pDLVIvDv~-------------------------mPd-~--------mdG~~lLe~Ir-- 87 (572)
|..+.+.+||++++.. ..|+|.+.-. |.+ . ...++++++++
T Consensus 129 vv~v~~~~Ea~~a~~~---Gad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~ 205 (297)
T 4adt_A 129 VCGCTNLGEALRRISE---GASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKL 205 (297)
T ss_dssp EEEESSHHHHHHHHHH---TCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHhC---CCCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHh
Confidence 3467788888887765 4677777632 111 0 01245666665
Q ss_pred -CCcEE--EEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 88 -DLPTI--ITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 88 -dlPVI--iLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
.+||| .-++..+.+.+.+++. +||+.+++=
T Consensus 206 ~~iPVivvA~GGI~t~~dv~~~~~-------------~GAdgVlVG 238 (297)
T 4adt_A 206 KRLPVVNFAAGGIATPADAAMCMQ-------------LGMDGVFVG 238 (297)
T ss_dssp TSCSSEEEEESCCCSHHHHHHHHH-------------TTCSCEEES
T ss_pred cCCCeEEEecCCCCCHHHHHHHHH-------------cCCCEEEEh
Confidence 58887 4566668899999988 999999873
No 242
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=40.02 E-value=70 Score=35.49 Aligned_cols=83 Identities=8% Similarity=0.115 Sum_probs=57.6
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCCh-HHHHHHhc-
Q 008254 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK- 87 (572)
Q Consensus 17 ~lRVLVV----DDD~~~~~~L~~lL~~~gy~V~ta---~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG-~~lLe~Ir- 87 (572)
.-+||+. |-+..-...+..+|+..||+|+.. -..++.++.+.+ ..+|+|.+-..+...+.. -++++.++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~--~~~diVgLS~l~t~~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKE--VNADLIGLSGLITPSLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHH--HTCSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4578877 667778888999999999999844 468888899988 789999998876541221 22444443
Q ss_pred ---CCcEEEEeCCCChH
Q 008254 88 ---DLPTIITSNIHCLS 101 (572)
Q Consensus 88 ---dlPVIiLS~~~d~~ 101 (572)
++||++--..-..+
T Consensus 176 ~g~~i~ViVGGa~~~~~ 192 (579)
T 3bul_A 176 QGFTIPLLIGGATTSKA 192 (579)
T ss_dssp TTCCSCEEEESTTCCHH
T ss_pred cCCCCeEEEEccccchh
Confidence 67876544434433
No 243
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=39.93 E-value=44 Score=30.78 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=45.7
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHhhcC--CCCeeEEEEeCCCCC
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDK--PENFHVAIVEVTTSN 75 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~-ta~~a~EAL~~L~e~--~~~pDLVIvDv~mPd 75 (572)
++.+.+|..||-++...+..+..++..+. .|. ...++.+.+..+... ...||+|++|.....
T Consensus 80 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~ 146 (221)
T 3u81_A 80 LQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDR 146 (221)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGG
T ss_pred CCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCccc
Confidence 45567999999999999999999988765 244 677887776655420 036999999975443
No 244
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=39.52 E-value=74 Score=29.78 Aligned_cols=64 Identities=9% Similarity=0.112 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~a------~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
.+...+...+++.||.+..+... .+.++.+.. ..+|-||+--.... -+.++.+. .+|||++...
T Consensus 30 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~vdgiIi~~~~~~----~~~~~~l~~~~iPvV~~~~~ 101 (292)
T 3k4h_A 30 EVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQG--RQIGGIILLYSREN----DRIIQYLHEQNFPFVLIGKP 101 (292)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHT--TCCCEEEESCCBTT----CHHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEEeCCCCC----hHHHHHHHHCCCCEEEECCC
Confidence 45666777788889988865432 335666776 68898887322112 24566653 7999988654
No 245
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=39.45 E-value=76 Score=28.00 Aligned_cols=55 Identities=11% Similarity=0.113 Sum_probs=41.6
Q ss_pred ccccCCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 9 SAWKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 9 s~~~~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
..++++ ++.+|.++....... .|...+..+..+.+..+++++|.. ++.|+++.+.
T Consensus 109 ~~~~dL-~g~~v~~~~g~~~~~-----~l~~~~~~~~~~~~~~~~~~~l~~--g~vDa~~~~~ 163 (233)
T 1ii5_A 109 RSVGDL-KNKEVAVVRDTTAVD-----WANFYQADVRETNNLTAAITLLQK--KQVEAVMFDR 163 (233)
T ss_dssp SSGGGG-TTCEEEEETTSHHHH-----HHHHTTCEEEEESSHHHHHHHHHT--TSCSEEEEEH
T ss_pred CCHHHh-CCCeEEEECCccHHH-----HHHHcCCCeEEcCCHHHHHHHHHc--CCccEEEeCH
Confidence 334454 467888887765432 344447899999999999999999 8999999875
No 246
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=39.25 E-value=2.1e+02 Score=28.00 Aligned_cols=95 Identities=14% Similarity=0.152 Sum_probs=59.1
Q ss_pred HHHHHHhCCCEEE--EEC-CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-----CCcEEEEeCCCChHHHH
Q 008254 33 LKFKLEAMDYIVS--TFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTIITSNIHCLSTMM 104 (572)
Q Consensus 33 L~~lL~~~gy~V~--ta~-~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-----dlPVIiLS~~~d~~~~~ 104 (572)
|+..|..-...+. ... +..+.++.+.. ..+|.||+|+.-.- .+.-++...++ ...+++=-+..+...+.
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~--~g~D~vilDlEhav-~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~ 82 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAE--AGLDYFIVDCEHAA-YTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQ 82 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHH--TTCSEEEEESSSSC-CCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhc--CCcCEEEEeccCCC-CCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH
Confidence 5556655433333 333 44666666666 67999999997655 45555555443 45555544556667777
Q ss_pred HHHHHHHhhhhccccccCCccEEEeC-CCCHHHHHHHHHH
Q 008254 105 KCIAIMVMNQLFDNNFQLGAVEFLRK-PLSEDKLRNLWQH 143 (572)
Q Consensus 105 kai~~~~~~~~~~~~~~~GA~dYL~K-Pvs~eeL~~~~q~ 143 (572)
.++. .|+++.++= =-+.+++..+++.
T Consensus 83 ~~ld-------------~G~~gI~lP~v~saed~~~~~~~ 109 (261)
T 3qz6_A 83 RLLD-------------IGAEGFMIPGVQSAETMRETVRL 109 (261)
T ss_dssp HHHH-------------HTCCEEEETTCCSHHHHHHHHHH
T ss_pred HHHh-------------cCCCEEEECCcCCHHHHHHHHHH
Confidence 7777 899887653 3366777765443
No 247
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=39.25 E-value=1.1e+02 Score=28.60 Aligned_cols=64 Identities=11% Similarity=0.177 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CH---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFY---NE---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~---~a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
+...+...++..||.+..+. +. .+.++.+.. ..+|-||+.-...+ .....++.++ .+|||++..
T Consensus 19 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~i~~ 90 (271)
T 2dri_A 19 LKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTV--RGTKILLINPTDSD--AVGNAVKMANQANIPVITLDR 90 (271)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTT--TTEEEEEECCSSTT--TTHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChH--HHHHHHHHHHHCCCcEEEecC
Confidence 45566677777899887553 22 234566666 67998887432222 2234566554 799998865
No 248
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=38.71 E-value=46 Score=32.60 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=46.3
Q ss_pred HHHHhhcCCCCeeEEEEeCCCCCC-CCh--------------------HHHHHHhc----CCcEEEEeCCCC------hH
Q 008254 53 ALSAFSDKPENFHVAIVEVTTSNT-DGS--------------------FKFLETAK----DLPTIITSNIHC------LS 101 (572)
Q Consensus 53 AL~~L~e~~~~pDLVIvDv~mPd~-mdG--------------------~~lLe~Ir----dlPVIiLS~~~d------~~ 101 (572)
.++.+.+ ...|+|-+++-..+. +|| +++++.++ ++||++|+-... ..
T Consensus 36 ~~~~l~~--~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~ 113 (268)
T 1qop_A 36 IIDTLID--AGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDA 113 (268)
T ss_dssp HHHHHHH--TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHH
T ss_pred HHHHHHH--CCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHH
Confidence 4455555 578999998855431 233 45566665 689998853221 23
Q ss_pred HHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHH
Q 008254 102 TMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLW 141 (572)
Q Consensus 102 ~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~ 141 (572)
.+..+.. .||++++.-....+++...+
T Consensus 114 ~~~~~~~-------------aGadgii~~d~~~e~~~~~~ 140 (268)
T 1qop_A 114 FYARCEQ-------------VGVDSVLVADVPVEESAPFR 140 (268)
T ss_dssp HHHHHHH-------------HTCCEEEETTCCGGGCHHHH
T ss_pred HHHHHHH-------------cCCCEEEEcCCCHHHHHHHH
Confidence 3444444 99999999877776655533
No 249
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=38.62 E-value=2.2e+02 Score=26.50 Aligned_cols=76 Identities=16% Similarity=0.244 Sum_probs=51.1
Q ss_pred CHHHHHHHhhcCCCCeeEE-EEeCCCCCCCC--hHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccC
Q 008254 49 NENEALSAFSDKPENFHVA-IVEVTTSNTDG--SFKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQL 122 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~pDLV-IvDv~mPd~md--G~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~ 122 (572)
+..+.++.+.+ ..++.| +.++.-.+... .++++++++ ++|||.-.+....+.+.++++ .
T Consensus 150 ~~~e~~~~~~~--~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~-------------~ 214 (244)
T 2y88_A 150 DLWDVLERLDS--EGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIAT-------------L 214 (244)
T ss_dssp EHHHHHHHHHH--TTCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHT-------------T
T ss_pred CHHHHHHHHHh--CCCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHh-------------h
Confidence 44566666666 457744 56655433112 366777775 799999988888899999887 7
Q ss_pred ---CccEEEeC------CCCHHHHHH
Q 008254 123 ---GAVEFLRK------PLSEDKLRN 139 (572)
Q Consensus 123 ---GA~dYL~K------Pvs~eeL~~ 139 (572)
||+++++= |+...+++.
T Consensus 215 ~~~Gad~v~vG~al~~~~~~~~~~~~ 240 (244)
T 2y88_A 215 THRGVEGAIVGKALYARRFTLPQALA 240 (244)
T ss_dssp GGGTEEEEEECHHHHTTSSCHHHHHH
T ss_pred ccCCCCEEEEcHHHHCCCcCHHHHHH
Confidence 99887653 666555554
No 250
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=38.24 E-value=62 Score=30.68 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCCCEEEEEC--C---HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeCC
Q 008254 29 AAAELKFKLEAMDYIVSTFY--N---ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNI 97 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~--~---a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~~ 97 (572)
+...+...+++.||.+..+. + ..+.++.+.. ..+|-||+--...+ . +.++.+. .+|||++...
T Consensus 29 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~---~-~~~~~~~~~iPvV~i~~~ 97 (289)
T 3k9c_A 29 LVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMR--ERCEAAILLGTRFD---T-DELGALADRVPALVVARA 97 (289)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTT--TTEEEEEEETCCCC---H-HHHHHHHTTSCEEEESSC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHh--CCCCEEEEECCCCC---H-HHHHHHHcCCCEEEEcCC
Confidence 45566777778899877443 2 4567777777 68998887543333 2 4555554 8999988654
No 251
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=38.06 E-value=1.4e+02 Score=29.62 Aligned_cols=107 Identities=12% Similarity=0.178 Sum_probs=60.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcE
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPT 91 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~-gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPV 91 (572)
|.+++||.||.--..-.. +...|... +++++ .+....+..+.+.+ .+.+ +.-.+--++++. .++-+
T Consensus 2 M~~~~~vgiiG~G~~g~~-~~~~l~~~~~~~lvav~d~~~~~~~~~~~---~~g~-------~~~~~~~~~l~~-~~~D~ 69 (354)
T 3db2_A 2 MYNPVGVAAIGLGRWAYV-MADAYTKSEKLKLVTCYSRTEDKREKFGK---RYNC-------AGDATMEALLAR-EDVEM 69 (354)
T ss_dssp CCCCEEEEEECCSHHHHH-HHHHHTTCSSEEEEEEECSSHHHHHHHHH---HHTC-------CCCSSHHHHHHC-SSCCE
T ss_pred CCCcceEEEEccCHHHHH-HHHHHHhCCCcEEEEEECCCHHHHHHHHH---HcCC-------CCcCCHHHHhcC-CCCCE
Confidence 456689999998765544 44455554 78876 44433443443332 1221 110123334432 23444
Q ss_pred EEEeCC--CChHHHHHHHHHHHhhhhccccccCCccEEEeCCC--CHHHHHHHHHHHH
Q 008254 92 IITSNI--HCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDKLRNLWQHVV 145 (572)
Q Consensus 92 IiLS~~--~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~eeL~~~~q~Vl 145 (572)
|+++.. ...+.+.+|++ .|..=|+-||+ +.++....++.+-
T Consensus 70 V~i~tp~~~h~~~~~~al~-------------~gk~vl~EKP~~~~~~~~~~l~~~a~ 114 (354)
T 3db2_A 70 VIITVPNDKHAEVIEQCAR-------------SGKHIYVEKPISVSLDHAQRIDQVIK 114 (354)
T ss_dssp EEECSCTTSHHHHHHHHHH-------------TTCEEEEESSSCSSHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHHHHHH-------------cCCEEEEccCCCCCHHHHHHHHHHHH
Confidence 444433 34566777777 99999999995 5677777555443
No 252
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=38.05 E-value=31 Score=26.41 Aligned_cols=47 Identities=19% Similarity=0.339 Sum_probs=35.5
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCCHHHHhhhCCCCCCHHHHHHhhhhhhh
Q 008254 334 DWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRM 383 (572)
Q Consensus 334 ~Wt~eLh~~Fv~av~~lG~~~a~Pk~il~lM~v~glt~~~v~SHLQkyr~ 383 (572)
.||+|=+.+++++|++.|..+ =+.|-+.|+. |=|..+++.|-++|-+
T Consensus 11 ~WT~eED~~L~~~v~~~G~~~--W~~IA~~~~~-~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 11 NWGADEELLLIDACETLGLGN--WADIADYVGN-ARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCHHHHHHHHHHHHHTTTTC--HHHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCcCC--HHHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence 699999999999999999532 2455555531 6788888888877743
No 253
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=37.96 E-value=44 Score=30.64 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=34.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCH---HHHHHHhhcCCCCeeEEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNE---NEALSAFSDKPENFHVAIV 69 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a---~EAL~~L~e~~~~pDLVIv 69 (572)
++|+|||.-..+...+.+.|++.|+++..+... ++..+.+... ..+++||+
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~-~~~~iil~ 54 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATM-KNPVLMLS 54 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTC-SSEEEEEC
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhc-cCCeEEEC
Confidence 479999977778888899999999987765544 4444554431 23456664
No 254
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=37.80 E-value=67 Score=28.60 Aligned_cols=53 Identities=15% Similarity=0.153 Sum_probs=41.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-EE-EEECCHHHHHHHhhcCCCCeeEEEEeCC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDY-IV-STFYNENEALSAFSDKPENFHVAIVEVT 72 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy-~V-~ta~~a~EAL~~L~e~~~~pDLVIvDv~ 72 (572)
.+|..||-++...+..+..++..+. .+ ....+..+.+..+.. ..||+|++|.-
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~fD~i~~~~p 122 (189)
T 3p9n_A 68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTT--SPVDLVLADPP 122 (189)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCS--SCCSEEEECCC
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccC--CCccEEEECCC
Confidence 4799999999999999998887664 34 366787777665544 68999999853
No 255
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=37.68 E-value=63 Score=31.88 Aligned_cols=73 Identities=22% Similarity=0.121 Sum_probs=0.0
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhCCCEEEEECC-------------------------------------------
Q 008254 17 GLRVLLLD----QDSSAAAELKFKLEAMDYIVSTFYN------------------------------------------- 49 (572)
Q Consensus 17 ~lRVLVVD----DD~~~~~~L~~lL~~~gy~V~ta~~------------------------------------------- 49 (572)
.||||++- .+..-...|...|++.|++|..+..
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFGQRD 80 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHBTCEEEEC--------------CCSCCGGGGCTT
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhCCCceeeecCCccchhhhhhhccccccccccccc
Q ss_pred ----------------------HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEe
Q 008254 50 ----------------------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (572)
Q Consensus 50 ----------------------a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS 95 (572)
..+..+.+++ .+||+||+| +. .-...++.+...+|+|.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~PD~Vv~~---~~-~~~~~~aa~~~giP~v~~~ 142 (391)
T 3tsa_A 81 TEAGRQLWEQTASNVAQSSLDQLPEYLRLAEA--WRPSVLLVD---VC-ALIGRVLGGLLDLPVVLHR 142 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCSEEEEE---TT-CHHHHHHHHHTTCCEEEEC
T ss_pred chhHHHHHHHHHHHHhhcchhhHHHHHHHHHh--cCCCEEEeC---cc-hhHHHHHHHHhCCCEEEEe
No 256
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=37.63 E-value=1.1e+02 Score=26.65 Aligned_cols=42 Identities=12% Similarity=0.233 Sum_probs=34.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhc
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSD 59 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e 59 (572)
+-|++...|...+...+.+++..||.|.++.+..+.-+-+.+
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsiee 44 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEE 44 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHH
Confidence 446677788889999999999999999999999887655443
No 257
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=37.51 E-value=56 Score=30.84 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=40.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHhhcCCCCeeEEEEeCCC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-------NENEALSAFSDKPENFHVAIVEVTT 73 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~-------~a~EAL~~L~e~~~~pDLVIvDv~m 73 (572)
|+|||..-.-.+-..|...|.+.||+|+.+. +.+..-+++.. ..+|+||--...
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~--~~~d~vi~~a~~ 66 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQE--IRPHIIIHCAAY 66 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHH--HCCSEEEECCCC
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHh--cCCCEEEECCcc
Confidence 5899999999999999999988899998654 34444445554 368999865443
No 258
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=37.16 E-value=1.3e+02 Score=27.97 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~a------~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
.+...+...+++.||.+..+... .+.++.+.. ..+|-||+-- . .. .+.++.+. .+|||++...
T Consensus 24 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~---~-~~-~~~~~~l~~~~iPvV~i~~~ 94 (276)
T 3jy6_A 24 ELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGS--RGFDGLILQS---F-SN-PQTVQEILHQQMPVVSVDRE 94 (276)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHT--TTCSEEEEES---S-CC-HHHHHHHHTTSSCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEec---C-Cc-HHHHHHHHHCCCCEEEEecc
Confidence 34566667777889988755432 245677777 6888888743 2 23 56677765 7999988654
No 259
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=37.06 E-value=77 Score=29.98 Aligned_cols=74 Identities=8% Similarity=0.201 Sum_probs=52.5
Q ss_pred CHHHHHHHhhcCCCCee-EEEEeCC----CCCCCChHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccc
Q 008254 49 NENEALSAFSDKPENFH-VAIVEVT----TSNTDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNF 120 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~pD-LVIvDv~----mPd~mdG~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~ 120 (572)
+..+....+.+ ..++ +++.++. +.+ -.++++++++ ++|||...+..+.+.+.++++
T Consensus 145 ~~~e~~~~~~~--~G~~~i~~t~~~~~g~~~g--~~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~------------ 208 (241)
T 1qo2_A 145 DPVSLLKRLKE--YGLEEIVHTEIEKDGTLQE--HDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQK------------ 208 (241)
T ss_dssp CHHHHHHHHHT--TTCCEEEEEETTHHHHTCC--CCHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHH------------
T ss_pred CHHHHHHHHHh--CCCCEEEEEeecccccCCc--CCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHh------------
Confidence 56676666666 5677 5555543 222 2378888876 899999999999999999888
Q ss_pred cC-----C-ccEEEe------CCCCHHHHHH
Q 008254 121 QL-----G-AVEFLR------KPLSEDKLRN 139 (572)
Q Consensus 121 ~~-----G-A~dYL~------KPvs~eeL~~ 139 (572)
. | |++.++ .+++.++++.
T Consensus 209 -~~~~~~G~adgv~vgsal~~~~~~~~~~~~ 238 (241)
T 1qo2_A 209 -VHTETNGLLKGVIVGRAFLEGILTVEVMKR 238 (241)
T ss_dssp -HHHHTTTSEEEEEECHHHHTTSSCHHHHHH
T ss_pred -cccccCCeEeEEEeeHHHHcCCCCHHHHHH
Confidence 7 8 888766 3676666655
No 260
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=37.01 E-value=64 Score=30.52 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=42.0
Q ss_pred cccccCCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 8 LSAWKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 8 ~s~~~~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
+..++++ ++.+|.+..+... .. +|+..+..+..+.+..+++.+|.. +++|+++.|.
T Consensus 156 i~s~~dL-~G~~v~v~~g~~~-~~----~l~~~~~~~~~~~~~~~~~~~l~~--g~vDa~i~~~ 211 (283)
T 2yln_A 156 IKSIADI-KGVKTAQSLTSNY-GE----KAKAAGAQLVPVDGLAQSLTLIEQ--KRADATLNDE 211 (283)
T ss_dssp CCSGGGC-TTSEEEECTTSHH-HH----HHHHTTCEEEECSSHHHHHHHHHT--TSCCEEEEEH
T ss_pred CCCHHHh-CCCEEEEecCchH-HH----HHHHcCCeEEEeCCHHHHHHHHHc--CCCCEEEecH
Confidence 4455666 6788887665543 22 344458888899999999999999 8999999875
No 261
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=36.89 E-value=83 Score=33.45 Aligned_cols=121 Identities=13% Similarity=0.138 Sum_probs=64.3
Q ss_pred CcccccccccccCCC--CccEEEEEeC----CHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHhhcCCCCee-EEEEeC
Q 008254 1 MVCTANDLSAWKDFP--KGLRVLLLDQ----DSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFH-VAIVEV 71 (572)
Q Consensus 1 m~~~an~~s~~~~~p--~~lRVLVVDD----D~~~~~~L~~lL~~-~gy~V~-ta~~a~EAL~~L~e~~~~pD-LVIvDv 71 (572)
|.-..|..|....++ +++||.||.- -..-...+..+.+. .+++|+ .+....+..+.+.+. ..+. +.+.
T Consensus 21 ~~~~~~~~~~~~~~~~m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~-~g~~~~~~~-- 97 (479)
T 2nvw_A 21 MLANNNKRSKLSTVPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQ-LQLKHATGF-- 97 (479)
T ss_dssp CCCCCCTTSGGGSSGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHH-TTCTTCEEE--
T ss_pred HHhhccccccCCCCCCCCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH-cCCCcceee--
Confidence 444556666555544 4589999998 44433344444443 478776 454334444433331 2221 1111
Q ss_pred CCCCCCChHHHHHHhcCCcEEEEeCCC--ChHHHHHHHHHHHhhhhccccccCC------ccEEEeCCC--CHHHHHHHH
Q 008254 72 TTSNTDGSFKFLETAKDLPTIITSNIH--CLSTMMKCIAIMVMNQLFDNNFQLG------AVEFLRKPL--SEDKLRNLW 141 (572)
Q Consensus 72 ~mPd~mdG~~lLe~IrdlPVIiLS~~~--d~~~~~kai~~~~~~~~~~~~~~~G------A~dYL~KPv--s~eeL~~~~ 141 (572)
.+--++++. .++-+|+++... ..+.+.+|++ .| ..=|+-||+ +.++...++
T Consensus 98 -----~d~~ell~~-~~vD~V~I~tp~~~H~~~~~~al~-------------aG~~~~~~khVl~EKPla~~~~ea~~l~ 158 (479)
T 2nvw_A 98 -----DSLESFAQY-KDIDMIVVSVKVPEHYEVVKNILE-------------HSSQNLNLRYLYVEWALAASVQQAEELY 158 (479)
T ss_dssp -----SCHHHHHHC-TTCSEEEECSCHHHHHHHHHHHHH-------------HSSSCSSCCEEEEESSSSSSHHHHHHHH
T ss_pred -----CCHHHHhcC-CCCCEEEEcCCcHHHHHHHHHHHH-------------CCCCcCCceeEEEeCCCcCCHHHHHHHH
Confidence 122333332 145555555443 3455667777 89 778899997 466666644
Q ss_pred HH
Q 008254 142 QH 143 (572)
Q Consensus 142 q~ 143 (572)
+.
T Consensus 159 ~~ 160 (479)
T 2nvw_A 159 SI 160 (479)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 262
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=36.85 E-value=1.3e+02 Score=27.96 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCC-ChHHHHHHhc--CCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTD-GSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~m-dG~~lLe~Ir--dlPVIiLS~~ 97 (572)
.+...++..+++.||.+..+.. . .+.++.+.. ..+|-||+--...... ...++++.+. .+|||++...
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 108 (298)
T 3tb6_A 32 SIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLS--QHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINAS 108 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHH--CCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecC
Confidence 4667788888888998876542 2 245666666 6788888743221101 2456677665 8999998654
No 263
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=36.66 E-value=1.1e+02 Score=29.89 Aligned_cols=57 Identities=12% Similarity=0.136 Sum_probs=41.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCC-----CEE-EEECCHHHHHHHhhcCCCCeeEEEEeCCCCC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMD-----YIV-STFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~g-----y~V-~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd 75 (572)
...+|..||-++...+..+..+...+ -.| ....++.+.+... . ..||+||+|...+.
T Consensus 101 ~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-~--~~fD~Ii~d~~~~~ 163 (283)
T 2i7c_A 101 SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-T--NTYDVIIVDSSDPI 163 (283)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-C--SCEEEEEEECCCTT
T ss_pred CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC-C--CCceEEEEcCCCCC
Confidence 34689999999999999888876431 233 3667887776544 3 57999999976543
No 264
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=36.55 E-value=1.3e+02 Score=28.31 Aligned_cols=76 Identities=14% Similarity=0.269 Sum_probs=49.4
Q ss_pred CHHHHHHHhhcCCCCee-EEEEeCCCCCCC--ChHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccC
Q 008254 49 NENEALSAFSDKPENFH-VAIVEVTTSNTD--GSFKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQL 122 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~pD-LVIvDv~mPd~m--dG~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~ 122 (572)
+..+.++.+.+ ..+| ++++++.-.+.. -.++++++++ ++|||.-.+..+.+.+.++++ .
T Consensus 147 ~~~e~~~~~~~--~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~-------------~ 211 (244)
T 1vzw_A 147 DLYETLDRLNK--EGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAG-------------L 211 (244)
T ss_dssp BHHHHHHHHHH--TTCCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHT-------------T
T ss_pred CHHHHHHHHHh--CCCCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHh-------------h
Confidence 55666666665 5677 455665422201 1367777775 799999988888899999888 8
Q ss_pred ---CccEEEe------CCCCHHHHHH
Q 008254 123 ---GAVEFLR------KPLSEDKLRN 139 (572)
Q Consensus 123 ---GA~dYL~------KPvs~eeL~~ 139 (572)
||+++++ .+++..++..
T Consensus 212 ~~~Gadgv~vG~al~~~~~~~~~~~~ 237 (244)
T 1vzw_A 212 VPAGVEGAIVGKALYAKAFTLEEALE 237 (244)
T ss_dssp GGGTEEEEEECHHHHTTSSCHHHHHH
T ss_pred ccCCCceeeeeHHHHcCCCCHHHHHH
Confidence 9998876 3555555444
No 265
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=36.50 E-value=1.7e+02 Score=29.32 Aligned_cols=33 Identities=12% Similarity=0.047 Sum_probs=22.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEE
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTF 47 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta 47 (572)
|+++.+|||+......+ .+...+++.||.++.+
T Consensus 4 m~~~~~ilI~g~g~~~~-~~~~a~~~~G~~~v~v 36 (403)
T 4dim_A 4 MYDNKRLLILGAGRGQL-GLYKAAKELGIHTIAG 36 (403)
T ss_dssp --CCCEEEEECCCGGGH-HHHHHHHHHTCEEEEE
T ss_pred ccCCCEEEEECCcHhHH-HHHHHHHHCCCEEEEE
Confidence 44567999999987543 3556677789877654
No 266
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=36.50 E-value=77 Score=30.27 Aligned_cols=70 Identities=10% Similarity=0.161 Sum_probs=47.9
Q ss_pred CCHHHHHHHhhcCCCCee-EEEEeCCCCCCC--ChHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhcccccc
Q 008254 48 YNENEALSAFSDKPENFH-VAIVEVTTSNTD--GSFKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQ 121 (572)
Q Consensus 48 ~~a~EAL~~L~e~~~~pD-LVIvDv~mPd~m--dG~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~ 121 (572)
.+..+.++.+.+ ...| |.|+|....... .-+++++.++ ++|||+.....+.+.+.+++.
T Consensus 30 ~~~~~~a~~~~~--~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~------------- 94 (266)
T 2w6r_A 30 ILLRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFL------------- 94 (266)
T ss_dssp EEHHHHHHHHHH--HTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHH-------------
T ss_pred CCHHHHHHHHHH--CCCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-------------
Confidence 356666666665 4455 445676543201 1278888886 799999888788888888888
Q ss_pred CCccEEEeCCC
Q 008254 122 LGAVEFLRKPL 132 (572)
Q Consensus 122 ~GA~dYL~KPv 132 (572)
.||+..++=-.
T Consensus 95 ~Gad~v~lg~~ 105 (266)
T 2w6r_A 95 AGADKALAASV 105 (266)
T ss_dssp HTCSEEECCCC
T ss_pred cCCcHhhhhHH
Confidence 89998887543
No 267
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=36.47 E-value=50 Score=30.95 Aligned_cols=65 Identities=8% Similarity=0.078 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
+...+...+++.||.+..+.. . .++++.+.. ..+|.||+-..-+. .....++.+. .+|||++...
T Consensus 23 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~~~~~ 95 (291)
T 3l49_A 23 AYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIA--QKPDAIIEQLGNLD--VLNPWLQKINDAGIPLFTVDTA 95 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--HCCSEEEEESSCHH--HHHHHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChh--hhHHHHHHHHHCCCcEEEecCC
Confidence 566777888888998876542 2 345666666 57898887532111 2344566664 7999988654
No 268
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=36.40 E-value=90 Score=29.15 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEeCC
Q 008254 29 AAAELKFKLEAMDYIVSTFY---NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNI 97 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~---~a~---EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS~~ 97 (572)
+...+...++..||.+..+. +.+ +.++.+.. ..+|-||+-..... ..-.+++.....+|||++...
T Consensus 25 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgii~~~~~~~-~~~~~~l~~~~~iPvV~~~~~ 96 (289)
T 1dbq_A 25 IIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQ--KRVDGLLVMCSEYP-EPLLAMLEEYRHIPMVVMDWG 96 (289)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEEECSCCC-HHHHHHHHHTTTSCEEEEECS
T ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHh--CCCCEEEEEeccCC-HHHHHHHHhccCCCEEEEccC
Confidence 45666777777899877543 222 34666666 67888877432222 112344443347999988653
No 269
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=36.12 E-value=95 Score=30.47 Aligned_cols=63 Identities=10% Similarity=0.076 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
.+...+...++..||.+..+.. . .+.++.+.. ..+|-||+--. + .....++.+. .+|||++..
T Consensus 87 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiI~~~~--~--~~~~~~~~l~~~~iPvV~i~~ 157 (355)
T 3e3m_A 87 QTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLR--RRPEAMVLSYD--G--HTEQTIRLLQRASIPIVEIWE 157 (355)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TCCSEEEEECS--C--CCHHHHHHHHHCCSCEEEESS
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh--CCCCEEEEeCC--C--CCHHHHHHHHhCCCCEEEECC
Confidence 3566777778888998876542 2 245666666 67887776321 1 2235556554 799998843
No 270
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=36.07 E-value=1.2e+02 Score=30.62 Aligned_cols=109 Identities=15% Similarity=0.150 Sum_probs=63.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEE
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~-gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVI 92 (572)
++++||.||.--..-...+...|... +++++ .+....+..+.+.+ .-...-+. .+--++++.- ++-+|
T Consensus 3 M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~--~~~~~~~~-------~~~~~ll~~~-~vD~V 72 (359)
T 3m2t_A 3 LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHR--FISDIPVL-------DNVPAMLNQV-PLDAV 72 (359)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGG--TSCSCCEE-------SSHHHHHHHS-CCSEE
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHH--hcCCCccc-------CCHHHHhcCC-CCCEE
Confidence 35689999999876665444445444 78877 55544555555554 11111111 1233444432 34455
Q ss_pred EEeCC--CChHHHHHHHHHHHhhhhccccccCCccEEEeCCC--CHHHHHHHHHHHHH
Q 008254 93 ITSNI--HCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDKLRNLWQHVVH 146 (572)
Q Consensus 93 iLS~~--~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~eeL~~~~q~Vlr 146 (572)
+++.. ...+.+.+|++ .|..=|+-||+ +.++...+++.+-+
T Consensus 73 ~i~tp~~~H~~~~~~al~-------------aGkhVl~EKPla~~~~e~~~l~~~a~~ 117 (359)
T 3m2t_A 73 VMAGPPQLHFEMGLLAMS-------------KGVNVFVEKPPCATLEELETLIDAARR 117 (359)
T ss_dssp EECSCHHHHHHHHHHHHH-------------TTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHHH-------------CCCeEEEECCCcCCHHHHHHHHHHHHH
Confidence 55443 33455677777 99999999996 66777776654433
No 271
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=36.05 E-value=3.5e+02 Score=27.19 Aligned_cols=95 Identities=13% Similarity=0.150 Sum_probs=64.0
Q ss_pred cEEEEEe----CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCCCCC-----------CC-
Q 008254 18 LRVLLLD----QDSSAAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT-----------DG- 78 (572)
Q Consensus 18 lRVLVVD----DD~~~~~~L~~lL~~~-gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~-----------md- 78 (572)
..++.++ +.....+.++.+-+.. +..|. .+.+.++|..++.. ..|.|++.-+ ++. ..
T Consensus 121 ~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~a---Gad~Ivvs~h-gG~~~~~~~~~~~g~~g 196 (336)
T 1ypf_A 121 PEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENA---GADATKVGIG-PGKVCITKIKTGFGTGG 196 (336)
T ss_dssp CSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSS-CSTTCHHHHHHSCSSTT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHc---CCCEEEEecC-CCceeecccccCcCCch
Confidence 3445554 4455666677666665 34443 36788888887766 5788887322 110 01
Q ss_pred -hHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 79 -SFKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 79 -G~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
-+.++.+++ ++|||.-.+..+...+.+++. +||+...+
T Consensus 197 ~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kala-------------lGAdaV~i 238 (336)
T 1ypf_A 197 WQLAALRWCAKAASKPIIADGGIRTNGDVAKSIR-------------FGATMVMI 238 (336)
T ss_dssp CHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHHH-------------TTCSEEEE
T ss_pred hHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHH-------------cCCCEEEe
Confidence 255565554 799999999999999999999 99998766
No 272
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=36.01 E-value=2.7e+02 Score=28.44 Aligned_cols=35 Identities=11% Similarity=0.023 Sum_probs=24.4
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC
Q 008254 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY 48 (572)
Q Consensus 13 ~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~ 48 (572)
-|+.+.+|+|+..-..- ..+...+++.||+|..+.
T Consensus 20 ~mm~~~~I~ilGgG~lg-~~l~~aa~~lG~~v~~~d 54 (403)
T 3k5i_A 20 HMWNSRKVGVLGGGQLG-RMLVESANRLNIQVNVLD 54 (403)
T ss_dssp -CCSCCEEEEECCSHHH-HHHHHHHHHHTCEEEEEE
T ss_pred cCCCCCEEEEECCCHHH-HHHHHHHHHCCCEEEEEE
Confidence 34456799999988654 445566677899887655
No 273
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=36.00 E-value=1.6e+02 Score=29.37 Aligned_cols=105 Identities=10% Similarity=0.129 Sum_probs=59.9
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcE
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPT 91 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~-gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPV 91 (572)
|.+++||.||.--..-.......|... +++|+ .+....+..+ . ....+-+. .+--++++. .++-+
T Consensus 4 M~~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~---~--~~~~~~~~-------~~~~~ll~~-~~vD~ 70 (352)
T 3kux_A 4 MADKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH---A--DWPAIPVV-------SDPQMLFND-PSIDL 70 (352)
T ss_dssp TTCCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---T--TCSSCCEE-------SCHHHHHHC-SSCCE
T ss_pred ccCCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH---h--hCCCCceE-------CCHHHHhcC-CCCCE
Confidence 556799999998766655344455554 78876 4443333322 2 11111111 122333332 23445
Q ss_pred EEEeCC--CChHHHHHHHHHHHhhhhccccccCCccEEEeCC--CCHHHHHHHHHHH
Q 008254 92 IITSNI--HCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKP--LSEDKLRNLWQHV 144 (572)
Q Consensus 92 IiLS~~--~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KP--vs~eeL~~~~q~V 144 (572)
|+++.. ...+.+.+|++ .|..=|+-|| .+.++...+++.+
T Consensus 71 V~i~tp~~~H~~~~~~al~-------------aGkhV~~EKPla~~~~e~~~l~~~a 114 (352)
T 3kux_A 71 IVIPTPNDTHFPLAQSALA-------------AGKHVVVDKPFTVTLSQANALKEHA 114 (352)
T ss_dssp EEECSCTTTHHHHHHHHHH-------------TTCEEEECSSCCSCHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHHHHHH-------------CCCcEEEECCCcCCHHHHHHHHHHH
Confidence 554443 34577788888 9999999999 5677777755543
No 274
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=35.78 E-value=1.2e+02 Score=28.70 Aligned_cols=81 Identities=12% Similarity=0.080 Sum_probs=48.4
Q ss_pred HHHHHHHhCCCEEE-EE--CCHHHHHHHhhcCCCCee-EEEEeCCCCCCCC---------hHHHHHHhc---CCcEEEEe
Q 008254 32 ELKFKLEAMDYIVS-TF--YNENEALSAFSDKPENFH-VAIVEVTTSNTDG---------SFKFLETAK---DLPTIITS 95 (572)
Q Consensus 32 ~L~~lL~~~gy~V~-ta--~~a~EAL~~L~e~~~~pD-LVIvDv~mPd~md---------G~~lLe~Ir---dlPVIiLS 95 (572)
.+...+++.|..+. .+ .+..++++.+.. . .| ++.+ +..++ .. +++++++++ ++||++--
T Consensus 124 ~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~--~-~d~~i~~-~~~~G-~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~G 198 (248)
T 1geq_A 124 EFTEIAREEGIKTVFLAAPNTPDERLKVIDD--M-TTGFVYL-VSLYG-TTGAREEIPKTAYDLLRRAKRICRNKVAVGF 198 (248)
T ss_dssp HHHHHHHHHTCEEEEEECTTCCHHHHHHHHH--H-CSSEEEE-ECCC--------CCCHHHHHHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHhCCCeEEEECCCCHHHHHHHHHh--c-CCCeEEE-EECCc-cCCCCCCCChhHHHHHHHHHhhcCCCEEEEe
Confidence 34444455554433 22 245666666654 2 23 4433 22243 22 245666665 79998888
Q ss_pred CCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 96 NIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 96 ~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
+....+.+.+++. .||+.+++=
T Consensus 199 GI~~~e~i~~~~~-------------~Gad~vivG 220 (248)
T 1geq_A 199 GVSKREHVVSLLK-------------EGANGVVVG 220 (248)
T ss_dssp CCCSHHHHHHHHH-------------TTCSEEEEC
T ss_pred ecCCHHHHHHHHH-------------cCCCEEEEc
Confidence 8777788888888 999999874
No 275
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=35.74 E-value=1.1e+02 Score=29.09 Aligned_cols=64 Identities=11% Similarity=0.086 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~a------~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
.+...+...+++.||.+..+... .+.++.+.. ..+|-||+--.... -++++.+. .+|||++...
T Consensus 29 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiI~~~~~~~----~~~~~~l~~~~iPvV~i~~~ 100 (295)
T 3hcw_A 29 NVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQ--RMVDAFILLYSKEN----DPIKQMLIDESMPFIVIGKP 100 (295)
T ss_dssp HHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHT--TCCSEEEESCCCTT----CHHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHh--CCcCEEEEcCcccC----hHHHHHHHhCCCCEEEECCC
Confidence 34566777777889988865532 235677777 68888887422112 24555554 7999988654
No 276
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=35.58 E-value=1.9e+02 Score=27.57 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEC----CHH---HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFY----NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~----~a~---EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
.+...++..++..||.+..+. +.+ +.++.+.. ..+|.||+.-..+. .....++.+. .+|||++...
T Consensus 17 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~~~~~ 91 (313)
T 2h3h_A 17 QVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIA--EGVNGIAIAPSDPT--AVIPTIKKALEMGIPVVTLDTD 91 (313)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHH--TTCSEEEECCSSTT--TTHHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChH--HHHHHHHHHHHCCCeEEEeCCC
Confidence 355667777777899887643 333 34555555 57898887433222 2234566653 7999988653
No 277
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=35.38 E-value=35 Score=35.02 Aligned_cols=84 Identities=11% Similarity=0.162 Sum_probs=54.3
Q ss_pred EEEEeCCHHHHHHHHHHHH----hCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEE
Q 008254 20 VLLLDQDSSAAAELKFKLE----AMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~----~~gy--~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIi 93 (572)
|||-|++-.....+...++ .... ..+.+.+.+|+.+++.. ..|+|++|-.-|+ +--+.++.++.-..|.
T Consensus 181 vLIKdNHi~~~G~i~~Av~~ar~~~p~~kIeVEv~tl~e~~eAl~a---GaDiImLDn~s~~--~l~~av~~~~~~v~le 255 (300)
T 3l0g_A 181 VLIKDNHIASCGSITLAIQRLRKNLKNEYIAIECDNISQVEESLSN---NVDMILLDNMSIS--EIKKAVDIVNGKSVLE 255 (300)
T ss_dssp EEECHHHHHHHSCHHHHHHHHHHHSSSCCEEEEESSHHHHHHHHHT---TCSEEEEESCCHH--HHHHHHHHHTTSSEEE
T ss_pred EEEcHhHHHHhCCHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHhhcCceEEE
Confidence 6766666444433333332 2222 45588999999999987 5899999963333 3334455555556777
Q ss_pred EeCCCChHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIA 108 (572)
Q Consensus 94 LS~~~d~~~~~kai~ 108 (572)
.|+.-..+.+.+...
T Consensus 256 aSGGIt~~~i~~~A~ 270 (300)
T 3l0g_A 256 VSGCVNIRNVRNIAL 270 (300)
T ss_dssp EESSCCTTTHHHHHT
T ss_pred EECCCCHHHHHHHHH
Confidence 888888888777655
No 278
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=35.36 E-value=1.4e+02 Score=28.22 Aligned_cols=64 Identities=9% Similarity=0.085 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~a------~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
.+...+...+++.||.+..+... .+.++.+.. ..+|-||+--...+ -+.++.+. .+|||++...
T Consensus 44 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~----~~~~~~l~~~~iPvV~i~~~ 115 (305)
T 3huu_A 44 DVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQS--KSVDGFILLYSLKD----DPIEHLLNEFKVPYLIVGKS 115 (305)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHT--TCCSEEEESSCBTT----CHHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh--CCCCEEEEeCCcCC----cHHHHHHHHcCCCEEEECCC
Confidence 34556667777789988865532 345667777 68888887432222 14566553 7999988664
No 279
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=35.22 E-value=1.5e+02 Score=27.76 Aligned_cols=65 Identities=11% Similarity=0.065 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---CH---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFY---NE---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~---~a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS~~ 97 (572)
.+...++..++..||.+..+. +. .+.++.+.. ..+|-||+--...+ ..-++.+. ..+|||++...
T Consensus 25 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~-~~~~~~l~--~~iPvV~~~~~ 95 (285)
T 3c3k_A 25 AVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSG--KMVDGVITMDALSE-LPELQNII--GAFPWVQCAEY 95 (285)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHT--TCCSEEEECCCGGG-HHHHHHHH--TTSSEEEESSC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEeCCCCC-hHHHHHHh--cCCCEEEEccc
Confidence 355667777888899877543 22 235566666 67898887422111 12233333 68999988653
No 280
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=34.85 E-value=47 Score=35.68 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=44.6
Q ss_pred CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCc
Q 008254 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGA 124 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA 124 (572)
+..+.++.+.+ ..+|+|++|...+....-.++++.++ ++|||+ ..-...+.+..++. +||
T Consensus 229 ~~~~~a~~l~~--aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~-g~v~t~e~a~~l~~-------------aGa 292 (490)
T 4avf_A 229 DTGERVAALVA--AGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIG-GNIATAEAAKALAE-------------AGA 292 (490)
T ss_dssp THHHHHHHHHH--TTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHH-------------TTC
T ss_pred chHHHHHHHhh--cccceEEecccCCcchhHHHHHHHHHHHCCCceEEE-eeeCcHHHHHHHHH-------------cCC
Confidence 44555666666 57999999987765122356777775 467766 33456677788888 999
Q ss_pred cEEEe
Q 008254 125 VEFLR 129 (572)
Q Consensus 125 ~dYL~ 129 (572)
+...+
T Consensus 293 D~I~v 297 (490)
T 4avf_A 293 DAVKV 297 (490)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 98886
No 281
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=34.84 E-value=66 Score=29.36 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=44.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---EEE-EECCHHHHHHHhhcCCCC-eeEEEEeCCCCCCCChHHHHHHh
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDY---IVS-TFYNENEALSAFSDKPEN-FHVAIVEVTTSNTDGSFKFLETA 86 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy---~V~-ta~~a~EAL~~L~e~~~~-pDLVIvDv~mPd~mdG~~lLe~I 86 (572)
.+|..||-++...+..+..++..+. .+. ...+..+.+..+.. .. ||+|++|.-... .+..++++.+
T Consensus 77 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~~fD~I~~~~~~~~-~~~~~~l~~~ 147 (201)
T 2ift_A 77 KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQN--QPHFDVVFLDPPFHF-NLAEQAISLL 147 (201)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCS--SCCEEEEEECCCSSS-CHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhcc--CCCCCEEEECCCCCC-ccHHHHHHHH
Confidence 4899999999999999999988775 444 45566554432223 57 999999865322 2334455544
No 282
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=34.84 E-value=1.8e+02 Score=25.08 Aligned_cols=68 Identities=13% Similarity=0.187 Sum_probs=45.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDY--IV-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy--~V-~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I 86 (572)
.+|..||-++...+..+..+...+. .+ ....+..+.+..+......||+|++|.-.-. .+..++++.+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~-~~~~~~~~~l 138 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAK-QEIVSQLEKM 138 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGG-CCHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCc-hhHHHHHHHH
Confidence 5899999999999999988887664 24 3567777766544311167999999854222 2444555544
No 283
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=34.63 E-value=63 Score=30.87 Aligned_cols=78 Identities=14% Similarity=0.049 Sum_probs=47.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC----EEE-EECCHHHH--------------HHH-------hhcCCCCeeEEEEe
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY----IVS-TFYNENEA--------------LSA-------FSDKPENFHVAIVE 70 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy----~V~-ta~~a~EA--------------L~~-------L~e~~~~pDLVIvD 70 (572)
+-+|.-||.|+...+..+..|+..|+ .|. ...++.++ +.. +.. ...||+|++|
T Consensus 51 ~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~-~~~fDlIfID 129 (202)
T 3cvo_A 51 GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEG-FRHPDVVLVD 129 (202)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTT-CCCCSEEEEC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhcccc-CCCCCEEEEe
Confidence 46999999999999999999999886 453 44443322 211 111 1579999999
Q ss_pred CCCCCCCChHHHHHHhcCCcEEEEeC
Q 008254 71 VTTSNTDGSFKFLETAKDLPTIITSN 96 (572)
Q Consensus 71 v~mPd~mdG~~lLe~IrdlPVIiLS~ 96 (572)
-.-.. .--...+..++.--+|++-+
T Consensus 130 g~k~~-~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 130 GRFRV-GCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp SSSHH-HHHHHHHHHCSSCEEEEETT
T ss_pred CCCch-hHHHHHHHhcCCCeEEEEeC
Confidence 74221 01112344455444555533
No 284
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=34.55 E-value=1e+02 Score=30.06 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=45.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAM-DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIIT 94 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~-gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiL 94 (572)
|||.|+.-.-.+-..+...+... +++++.+.+..+-++.+.. ..+| |++|+.-|+ ...+.++... .+++|+-
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~--~~~D-vvIDfT~p~--a~~~~~~~a~~~g~~~Vig 75 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTD--GNTE-VVIDFTHPD--VVMGNLEFLIDNGIHAVVG 75 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHH--TTCC-EEEECSCTT--THHHHHHHHHHTTCEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhc--cCCc-EEEEccChH--HHHHHHHHHHHcCCCEEEc
Confidence 47888887666666666666654 8888744321111221222 2478 778998887 5677776653 7888774
Q ss_pred eC
Q 008254 95 SN 96 (572)
Q Consensus 95 S~ 96 (572)
|.
T Consensus 76 TT 77 (245)
T 1p9l_A 76 TT 77 (245)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 285
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=34.35 E-value=96 Score=24.22 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=41.4
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCCHHHHhhhCCCCCCHHHHHHhhhhhhhhhcccC
Q 008254 328 RKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHIL 389 (572)
Q Consensus 328 ~kk~r~~Wt~eLh~~Fv~av~~lG~~~a~Pk~il~lM~v~glt~~~v~SHLQkyr~~~~~~~ 389 (572)
.++.|-.||+|=-...+++|+++|..+ =+.|.+.|+..|=|-.+++.+ |+.+++..+
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~~~--W~~Ia~~~~~~~Rt~~qcr~R---w~~~l~p~i 62 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGEGN--WSKILLHYKFNNRTSVMLKDR---WRTMKKLKL 62 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCSSC--HHHHHHHSCCSSCCHHHHHHH---HHHHHHTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCc--HHHHHHHcCcCCCCHHHHHHH---HHHHcCCCC
Confidence 456678999999999999999999432 357778876557777777654 555555433
No 286
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=34.14 E-value=1e+02 Score=29.01 Aligned_cols=64 Identities=11% Similarity=0.196 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CH---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFY---NE---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~---~a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
+...+...++..||.+..+. +. .+.++.+.. ..+|-||+--..++ ...+.++.+. .+|||++..
T Consensus 19 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~~~~ 90 (283)
T 2ioy_A 19 LKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQ--QKVDVLLINPVDSD--AVVTAIKEANSKNIPVITIDR 90 (283)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCSSTT--TTHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHH--cCCCEEEEeCCchh--hhHHHHHHHHHCCCeEEEecC
Confidence 45566777777899887653 22 234566666 67898887332222 2234566664 799998854
No 287
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=34.14 E-value=1.7e+02 Score=27.10 Aligned_cols=61 Identities=10% Similarity=0.116 Sum_probs=44.3
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCE--E-EEECCHHHHHHHhhcC------------C-CCeeEEEEeCCCC
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYI--V-STFYNENEALSAFSDK------------P-ENFHVAIVEVTTS 74 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~--V-~ta~~a~EAL~~L~e~------------~-~~pDLVIvDv~mP 74 (572)
++.+.+|..||-++...+..+..++..|+. | ....+..+.+..+... . ..||+|++|...+
T Consensus 82 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~ 158 (239)
T 2hnk_A 82 LPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE 158 (239)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHH
Confidence 444679999999999999999999887752 3 3667887776655220 1 3699999996543
No 288
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*
Probab=34.06 E-value=1e+02 Score=30.56 Aligned_cols=84 Identities=11% Similarity=0.115 Sum_probs=50.9
Q ss_pred cccccccCCCCccEEEEEeCCHHHHHHHHHHHHhC-CC-EEEEECCHHHHHHH----hhcCCCCeeEEEEeCCCCCCCCh
Q 008254 6 NDLSAWKDFPKGLRVLLLDQDSSAAAELKFKLEAM-DY-IVSTFYNENEALSA----FSDKPENFHVAIVEVTTSNTDGS 79 (572)
Q Consensus 6 n~~s~~~~~p~~lRVLVVDDD~~~~~~L~~lL~~~-gy-~V~ta~~a~EAL~~----L~e~~~~pDLVIvDv~mPd~mdG 79 (572)
..++.+.+|.++++|||..-.-.+-..|...|.+. |+ +|+.+....+.+.. +.. ..+.++..|+. + -
T Consensus 10 ~~~~~~~~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~v~~~~~Dl~--d---~ 82 (344)
T 2gn4_A 10 MSMPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFND--PRMRFFIGDVR--D---L 82 (344)
T ss_dssp ------CCTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCC--TTEEEEECCTT--C---H
T ss_pred CCCccHHHhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcC--CCEEEEECCCC--C---H
Confidence 34566778888899999999988888888888777 87 88865544433322 222 35667777763 2 2
Q ss_pred HHHHHHhcCCcEEEEeC
Q 008254 80 FKFLETAKDLPTIITSN 96 (572)
Q Consensus 80 ~~lLe~IrdlPVIiLS~ 96 (572)
-.+.+.+..+-+|+-.+
T Consensus 83 ~~l~~~~~~~D~Vih~A 99 (344)
T 2gn4_A 83 ERLNYALEGVDICIHAA 99 (344)
T ss_dssp HHHHHHTTTCSEEEECC
T ss_pred HHHHHHHhcCCEEEECC
Confidence 23333344556666544
No 289
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=33.95 E-value=1e+02 Score=30.01 Aligned_cols=63 Identities=10% Similarity=-0.034 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEe
Q 008254 27 SSAAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITS 95 (572)
Q Consensus 27 ~~~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS 95 (572)
..+...+...+++.||.+..+.. . .+.++.+.. ..+|-||+--. + ..-..++.+. .+|||++.
T Consensus 84 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdGiIi~~~--~--~~~~~~~~l~~~~iPvV~i~ 154 (344)
T 3kjx_A 84 PEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLS--WRPSGVIIAGL--E--HSEAARAMLDAAGIPVVEIM 154 (344)
T ss_dssp HHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHT--TCCSEEEEECS--C--CCHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEECC--C--CCHHHHHHHHhCCCCEEEEe
Confidence 34667778888888998875442 2 345666666 67888777321 1 2225566554 79999983
No 290
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=33.92 E-value=74 Score=29.92 Aligned_cols=55 Identities=7% Similarity=-0.044 Sum_probs=44.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS 74 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mP 74 (572)
-+|..||-++...+..+......+..+. ...++++.+..+.. ..||.|+.|....
T Consensus 84 ~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~FD~i~~D~~~~ 139 (236)
T 3orh_A 84 DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPD--GHFDGILYDTYPL 139 (236)
T ss_dssp EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCT--TCEEEEEECCCCC
T ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccc--cCCceEEEeeeec
Confidence 3789999999999999998888877655 66788877766666 6899999997543
No 291
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=33.87 E-value=70 Score=28.64 Aligned_cols=69 Identities=4% Similarity=0.111 Sum_probs=47.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEeC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS~ 96 (572)
|+|||..-.-.+-..|...|.+.|++|+.+....+.+..+.. ...++..|+.-++ . +.+..+-+|+..+
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~---~~~~~~~D~~d~~---~----~~~~~~d~vi~~a 69 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHK---DINILQKDIFDLT---L----SDLSDQNVVVDAY 69 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCS---SSEEEECCGGGCC---H----HHHTTCSEEEECC
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccC---CCeEEeccccChh---h----hhhcCCCEEEECC
Confidence 589999988888888888888889999866554455554432 4677788876555 2 4445555665544
No 292
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=33.69 E-value=2.4e+02 Score=29.72 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhC-CCEE--EEECCHHHHHHHhhcCCCCeeEEEEeCCCC-----------CCCChHHHHHHh----c--
Q 008254 28 SAAAELKFKLEAM-DYIV--STFYNENEALSAFSDKPENFHVAIVEVTTS-----------NTDGSFKFLETA----K-- 87 (572)
Q Consensus 28 ~~~~~L~~lL~~~-gy~V--~ta~~a~EAL~~L~e~~~~pDLVIvDv~mP-----------d~mdG~~lLe~I----r-- 87 (572)
...+.++.+-+.. +..| ....+.++|..+... ..|.|++...-- + ...+.++..+ +
T Consensus 264 ~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~---G~d~I~v~~~~G~~~~~~~~~~~g-~p~~~~l~~v~~~~~~~ 339 (494)
T 1vrd_A 264 RVIETLEMIKADYPDLPVVAGNVATPEGTEALIKA---GADAVKVGVGPGSICTTRVVAGVG-VPQLTAVMECSEVARKY 339 (494)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHT---TCSEEEECSSCSTTCHHHHHHCCC-CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHc---CCCEEEEcCCCCccccccccCCCC-ccHHHHHHHHHHHHhhc
Confidence 3555555555554 4433 356778887665544 578888743210 1 1223333333 1
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 88 DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
++|||.-.+..+...+.+++. +||+...+
T Consensus 340 ~ipvia~GGI~~~~di~kala-------------~GAd~V~i 368 (494)
T 1vrd_A 340 DVPIIADGGIRYSGDIVKALA-------------AGAESVMV 368 (494)
T ss_dssp TCCEEEESCCCSHHHHHHHHH-------------TTCSEEEE
T ss_pred CCCEEEECCcCCHHHHHHHHH-------------cCCCEEEE
Confidence 699999999999999999999 99988765
No 293
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=33.42 E-value=32 Score=32.60 Aligned_cols=53 Identities=9% Similarity=0.019 Sum_probs=39.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVT 72 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~ 72 (572)
+++|||..- -.+-..|...|.+.||+|+.+....+....+.. ..+.++..|+.
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--~~~~~~~~D~~ 57 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--SGAEPLLWPGE 57 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--TTEEEEESSSS
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--CCCeEEEeccc
Confidence 479999997 888888888888889999866544444555555 46777777663
No 294
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=33.32 E-value=77 Score=33.15 Aligned_cols=105 Identities=21% Similarity=0.269 Sum_probs=63.3
Q ss_pred cccCCCCccEEEEEe--CCH---HHHHHHHHHHHhCCCEEEEECCHHHHHHHhh-------------------cCCCCee
Q 008254 10 AWKDFPKGLRVLLLD--QDS---SAAAELKFKLEAMDYIVSTFYNENEALSAFS-------------------DKPENFH 65 (572)
Q Consensus 10 ~~~~~p~~lRVLVVD--DD~---~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~-------------------e~~~~pD 65 (572)
.|...+ -+|+||- +++ .....|...|.+.|+.|..-....+.+.... +....+|
T Consensus 33 ~w~~~~--k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 110 (365)
T 3pfn_A 33 TWNKSP--KSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQID 110 (365)
T ss_dssp EESSCC--CEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCS
T ss_pred ccCCCC--CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCC
Confidence 344433 3688884 233 3456677777788998876544444322211 1113578
Q ss_pred EEEEeCCCCCCCCh--HHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHH
Q 008254 66 VAIVEVTTSNTDGS--FKFLETAK--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLW 141 (572)
Q Consensus 66 LVIvDv~mPd~mdG--~~lLe~Ir--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~ 141 (572)
+||+ +- .|| +...+.+. .+|||=+. .|-.+||. +++.+++..++
T Consensus 111 lvI~---lG--GDGT~L~aa~~~~~~~~PvlGiN--------------------------~G~LGFLt-~~~~~~~~~~l 158 (365)
T 3pfn_A 111 FIIC---LG--GDGTLLYASSLFQGSVPPVMAFH--------------------------LGSLGFLT-PFSFENFQSQV 158 (365)
T ss_dssp EEEE---ES--STTHHHHHHHHCSSSCCCEEEEE--------------------------SSSCTTTC-CEESTTHHHHH
T ss_pred EEEE---Ec--ChHHHHHHHHHhccCCCCEEEEc--------------------------CCCCccce-eecHHHHHHHH
Confidence 8876 33 366 44444443 57877553 56667777 77888899988
Q ss_pred HHHHHHH
Q 008254 142 QHVVHKA 148 (572)
Q Consensus 142 q~Vlrr~ 148 (572)
+.++++.
T Consensus 159 ~~vl~g~ 165 (365)
T 3pfn_A 159 TQVIEGN 165 (365)
T ss_dssp HHHHHSC
T ss_pred HHHHcCC
Confidence 8888764
No 295
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=33.30 E-value=42 Score=30.99 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=42.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCe-eEEEEeCC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENF-HVAIVEVT 72 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~p-DLVIvDv~ 72 (572)
++++|||..-.-.+-..|...|.+.|++|+.+....+.+..+.. ..+ .++..|+.
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--~~~~~~~~~Dl~ 75 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--RGASDIVVANLE 75 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--TTCSEEEECCTT
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--CCCceEEEcccH
Confidence 56899999999999999999988889999866655555555555 467 78888886
No 296
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=33.13 E-value=1.7e+02 Score=29.81 Aligned_cols=41 Identities=12% Similarity=0.227 Sum_probs=27.6
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 88 DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 88 dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
.+|+|++-...... +.+. .|+. +++.+ +.++|.+++..++.
T Consensus 326 G~PvV~~~~~~~~~---e~v~-------------~G~~-~lv~~-d~~~l~~ai~~ll~ 366 (396)
T 3dzc_A 326 GKPVLVMRETTERP---EAVA-------------AGTV-KLVGT-NQQQICDALSLLLT 366 (396)
T ss_dssp TCCEEECCSSCSCH---HHHH-------------HTSE-EECTT-CHHHHHHHHHHHHH
T ss_pred CCCEEEccCCCcch---HHHH-------------cCce-EEcCC-CHHHHHHHHHHHHc
Confidence 89999764444432 2345 6753 66654 89999998888775
No 297
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=33.11 E-value=52 Score=32.71 Aligned_cols=82 Identities=12% Similarity=0.167 Sum_probs=48.1
Q ss_pred HHHHHHhhcCCCCeeEEEEeCCCCCC-CC--------------------hHHHHHHhc---CCcEEEEeCCCChHHHHHH
Q 008254 51 NEALSAFSDKPENFHVAIVEVTTSNT-DG--------------------SFKFLETAK---DLPTIITSNIHCLSTMMKC 106 (572)
Q Consensus 51 ~EAL~~L~e~~~~pDLVIvDv~mPd~-md--------------------G~~lLe~Ir---dlPVIiLS~~~d~~~~~ka 106 (572)
.+.++.|.+ . .|+|.+++-..+. .| .+++++.+| ++|||+|+-.. . +..
T Consensus 33 ~~~~~~l~~--~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n-~--v~~- 105 (271)
T 1ujp_A 33 LQAVEEVLP--Y-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLN-P--VLA- 105 (271)
T ss_dssp HHHHHHHGG--G-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHH-H--HHH-
T ss_pred HHHHHHHHh--c-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCc-H--HHH-
Confidence 345566667 6 8999988755431 12 256677776 79999984222 1 110
Q ss_pred HHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHH
Q 008254 107 IAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQ 142 (572)
Q Consensus 107 i~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q 142 (572)
+-+.+++..+.+.|++++|.=.+..+++...++
T Consensus 106 ---~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~ 138 (271)
T 1ujp_A 106 ---WGPERFFGLFKQAGATGVILPDLPPDEDPGLVR 138 (271)
T ss_dssp ---HCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHH
T ss_pred ---hhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHH
Confidence 011123334445999999998777766655443
No 298
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=33.11 E-value=93 Score=30.30 Aligned_cols=107 Identities=12% Similarity=0.123 Sum_probs=62.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcE
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPT 91 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~-~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPV 91 (572)
+++++||.||.--..-...+...|.. .+++++ .+....+..+.+.+ .+.+-. - .+--++++ ++-+
T Consensus 3 ~M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~---~~~~~~------~-~~~~~ll~---~~D~ 69 (308)
T 3uuw_A 3 AMKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICS---DYRIMP------F-DSIESLAK---KCDC 69 (308)
T ss_dssp --CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHH---HHTCCB------C-SCHHHHHT---TCSE
T ss_pred ccccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHH---HcCCCC------c-CCHHHHHh---cCCE
Confidence 44568999999977666545555555 477777 45544444444433 122110 1 23344444 4555
Q ss_pred EEEeCCC--ChHHHHHHHHHHHhhhhccccccCCccEEEeCCC--CHHHHHHHHHHHHH
Q 008254 92 IITSNIH--CLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDKLRNLWQHVVH 146 (572)
Q Consensus 92 IiLS~~~--d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~eeL~~~~q~Vlr 146 (572)
|+++... ..+.+.+|++ .|..=++-||+ +.++...+++.+-+
T Consensus 70 V~i~tp~~~h~~~~~~al~-------------~gk~vl~EKP~~~~~~~~~~l~~~a~~ 115 (308)
T 3uuw_A 70 IFLHSSTETHYEIIKILLN-------------LGVHVYVDKPLASTVSQGEELIELSTK 115 (308)
T ss_dssp EEECCCGGGHHHHHHHHHH-------------TTCEEEECSSSSSSHHHHHHHHHHHHH
T ss_pred EEEeCCcHhHHHHHHHHHH-------------CCCcEEEcCCCCCCHHHHHHHHHHHHH
Confidence 5554443 3456677777 99999999998 66777776554433
No 299
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=33.07 E-value=2.5e+02 Score=30.06 Aligned_cols=97 Identities=18% Similarity=0.234 Sum_probs=63.6
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCEE--EEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCC-----------C
Q 008254 17 GLRVLLLD----QDSSAAAELKFKLEAM-DYIV--STFYNENEALSAFSDKPENFHVAIVEVTTSNTD-----------G 78 (572)
Q Consensus 17 ~lRVLVVD----DD~~~~~~L~~lL~~~-gy~V--~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~m-----------d 78 (572)
+..++++| +.....+.++.+-+.. +..| ..+.+.++|..++.. ..|.|++... |+.. .
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~Vg~g-~Gs~~~tr~~~g~g~p 318 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIG-PGSICTTRIVTGVGVP 318 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHH---TCSEEEECSS-CCTTBCHHHHHCCCCC
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHh---CCCEEEECCC-CCcCcccccccCCCcc
Confidence 45567776 3445556666666655 3333 257788888777665 6788887532 2201 1
Q ss_pred hHHHHHHh----c--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 79 SFKFLETA----K--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 79 G~~lLe~I----r--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
.+.++..+ + ++|||.--+..+...+.+++. +||+..++=
T Consensus 319 ~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala-------------~GAd~V~iG 363 (496)
T 4fxs_A 319 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIA-------------AGASCVMVG 363 (496)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHH-------------TTCSEEEES
T ss_pred HHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHH-------------cCCCeEEec
Confidence 23333333 2 699998888889999999999 999988874
No 300
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=33.03 E-value=53 Score=27.86 Aligned_cols=75 Identities=17% Similarity=0.222 Sum_probs=46.3
Q ss_pred CCccEEEEEeCC----HHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh---
Q 008254 15 PKGLRVLLLDQD----SSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--- 86 (572)
Q Consensus 15 p~~lRVLVVDDD----~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I--- 86 (572)
|+.|+||+|-.. ......|+..+...|+++. .+.+..++-..+ ..+|+||+-..+.. -++-++..
T Consensus 2 ~~~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~----~~~D~Ii~t~~l~~---~~~~~~~~~~~ 74 (109)
T 2l2q_A 2 PGSMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEVV----DRFDVVLLAPQSRF---NKKRLEEITKP 74 (109)
T ss_dssp CCCEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHHT----TTCSEEEECSCCSS---HHHHHHHHHHH
T ss_pred CCceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhc----CCCCEEEECCccHH---HHHHHHHHhcc
Confidence 445678877542 2677788888888776432 233333333333 35899999877765 23333332
Q ss_pred cCCcEEEEeC
Q 008254 87 KDLPTIITSN 96 (572)
Q Consensus 87 rdlPVIiLS~ 96 (572)
.++||+.++.
T Consensus 75 ~~~pv~~I~~ 84 (109)
T 2l2q_A 75 KGIPIEIINT 84 (109)
T ss_dssp HTCCEEECCH
T ss_pred cCCCEEEECh
Confidence 2789998876
No 301
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=32.95 E-value=52 Score=31.28 Aligned_cols=97 Identities=19% Similarity=0.180 Sum_probs=59.6
Q ss_pred HHHHHHHHHhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCC----CCCCChHHHHHHhc------CCcEEEEeCC
Q 008254 30 AAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTT----SNTDGSFKFLETAK------DLPTIITSNI 97 (572)
Q Consensus 30 ~~~L~~lL~~~gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~m----Pd~mdG~~lLe~Ir------dlPVIiLS~~ 97 (572)
....-..|+..|+.+. -|.++...+..+.. -.||.|=+|..+ ........+++.+. ++.|| ..+-
T Consensus 141 ~~~~l~~l~~~G~~ialDdfG~g~ssl~~L~~--l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~vi-aeGV 217 (259)
T 3s83_A 141 AAVILKTLRDAGAGLALDDFGTGFSSLSYLTR--LPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVV-AEGV 217 (259)
T ss_dssp HHHHHHHHHHHTCEEEEECC---CHHHHHHHH--SCCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEEE-ECCC
T ss_pred HHHHHHHHHHCCCEEEEECCCCCchhHHHHHh--CCCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeEE-EEeC
Confidence 3344456777799776 46677888888888 789999999633 22012334454442 45443 5566
Q ss_pred CChHHHHHHHHHHHhhhhccccccCCcc---EE-EeCCCCHHHHHHHHH
Q 008254 98 HCLSTMMKCIAIMVMNQLFDNNFQLGAV---EF-LRKPLSEDKLRNLWQ 142 (572)
Q Consensus 98 ~d~~~~~kai~~~~~~~~~~~~~~~GA~---dY-L~KPvs~eeL~~~~q 142 (572)
++.+....+.. +|++ +| +.||...+++...++
T Consensus 218 Et~~~~~~l~~-------------lG~~~~QG~~~~~p~~~~~~~~~l~ 253 (259)
T 3s83_A 218 ENAEMAHALQS-------------LGCDYGQGFGYAPALSPQEAEVYLN 253 (259)
T ss_dssp CSHHHHHHHHH-------------HTCCEECBTTTBCCBCHHHHHHHHH
T ss_pred CCHHHHHHHHh-------------cCCCEeecCcccCCCCHHHHHHHHH
Confidence 66666655555 6765 33 669999999887544
No 302
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=32.94 E-value=96 Score=26.71 Aligned_cols=88 Identities=7% Similarity=0.091 Sum_probs=47.7
Q ss_pred CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEeCC---CChHHHHHHHHHHHhhhhccccccCCcc
Q 008254 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNI---HCLSTMMKCIAIMVMNQLFDNNFQLGAV 125 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS~~---~d~~~~~kai~~~~~~~~~~~~~~~GA~ 125 (572)
.+.+|++.|++ ...++-+++++..-..+--.+.+.++....|++-.. +......+.-. +........
T Consensus 27 ~a~eA~~~L~~--~Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvvE~~~~G~l~~~i~~~~--------~~~~~~~i~ 96 (118)
T 3ju3_A 27 PILDVIEDLKE--EGISANLLYLKMFSPFPTEFVKNVLSSANLVIDVESNYTAQAAQMIKLYT--------GIDIKNKIL 96 (118)
T ss_dssp HHHHHHHHHHH--TTCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCCCCCCCCCHHHHHHHHH--------CCCCCCCCC
T ss_pred HHHHHHHHHHH--CCCceEEEEECeEecCCHHHHHHHHcCCCEEEEEECCCCCcHHHHHHHHc--------CCCceeEEe
Confidence 45566777777 567888888877654666556666664333332222 22222222211 110011111
Q ss_pred EEEeCCCCHHHHHHHHHHHHH
Q 008254 126 EFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 126 dYL~KPvs~eeL~~~~q~Vlr 146 (572)
.|=-.|++.++|.+.++.+++
T Consensus 97 ~~~G~~~~~~ei~~~i~~~~~ 117 (118)
T 3ju3_A 97 KYNGRHMTEDEILKSAKEILN 117 (118)
T ss_dssp CBTTBCCCHHHHHHHHHHHHH
T ss_pred eeCCeeCCHHHHHHHHHHHhh
Confidence 222259999999998887763
No 303
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=32.89 E-value=1.2e+02 Score=26.44 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=41.6
Q ss_pred cccccCCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 8 LSAWKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 8 ~s~~~~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
+..++++ ++.+|.++..... ...|...+ .+..+..+.+..+++.+|.. ++.|+++.+.
T Consensus 101 i~~~~dL-~g~~i~~~~g~~~-~~~l~~~~--~~~~~~~~~~~~~~~~~l~~--g~vDa~~~~~ 158 (226)
T 1wdn_A 101 VKSVKDL-DGKVVAVKSGTGS-VDYAKANI--KTKDLRQFPNIDNAYMELGT--NRADAVLHDT 158 (226)
T ss_dssp CSSSTTT-TTCEEEEETTSHH-HHHHHHHC--CCSEEEEESSHHHHHHHHHT--TSCSEEEEEH
T ss_pred CCCHHHh-CCCEEEEEcCCcH-HHHHHHhC--CCceEEEeCCHHHHHHHHHc--CCcCEEEeCc
Confidence 3445555 4678888766543 33333332 36788899999999999999 8999999874
No 304
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=32.85 E-value=46 Score=30.92 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=44.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEe
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMD-YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~g-y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS 95 (572)
+.+|||..-.-.+-..|...|.+.| +.|+.+....+.+..+.. ....++..|+. + .-.+.+.+..+-+|+..
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~--~~~~~~~~Dl~--d---~~~~~~~~~~~D~vv~~ 95 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYP--TNSQIIMGDVL--N---HAALKQAMQGQDIVYAN 95 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCC--TTEEEEECCTT--C---HHHHHHHHTTCSEEEEE
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccccc--CCcEEEEecCC--C---HHHHHHHhcCCCEEEEc
Confidence 4679999989899999999998888 888865543333333333 35566666653 2 22333334455555543
No 305
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=32.81 E-value=1.5e+02 Score=28.03 Aligned_cols=64 Identities=9% Similarity=0.052 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
.+...+...+++.||.+..+.. . .+.++.+.. ..+|-||+--. + .+ -..++.+. .+|||++...
T Consensus 33 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~--~-~~-~~~~~~l~~~~iPvV~~~~~ 104 (289)
T 2fep_A 33 ELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLG--KQVDGIVFMGG--N-IT-DEHVAEFKRSPVPIVLAASV 104 (289)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCS--C-CC-HHHHHHHHHSSSCEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEecC--C-CC-HHHHHHHHhcCCCEEEEccc
Confidence 3556677778888998875432 2 245666666 67898877432 2 12 34455553 7999988653
No 306
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=32.46 E-value=34 Score=31.24 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=44.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEe-CCCCCCCCh--HHHHHHh--cCCcEEEE
Q 008254 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVE-VTTSNTDGS--FKFLETA--KDLPTIIT 94 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvD-v~mPd~mdG--~~lLe~I--rdlPVIiL 94 (572)
|+|||-.......+...|+..|+++..+.... .++.+.. ..+|.||+= -.-++ ..+ .++++.+ .+.||+-+
T Consensus 3 i~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~--~~~dglil~Gg~~~~-~~~~~~~~i~~~~~~~~PilGI 78 (189)
T 1wl8_A 3 IVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKA--MNPKGIIFSGGPSLE-NTGNCEKVLEHYDEFNVPILGI 78 (189)
T ss_dssp EEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHH--TCCSEEEECCCSCTT-CCTTHHHHHHTGGGTCSCEEEE
T ss_pred EEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhcc--cCCCEEEECCCCChh-hhhhHHHHHHHHhhCCCeEEEE
Confidence 99999888778899999999999887665432 2233333 357766652 21122 122 4555544 26787766
Q ss_pred e
Q 008254 95 S 95 (572)
Q Consensus 95 S 95 (572)
.
T Consensus 79 C 79 (189)
T 1wl8_A 79 C 79 (189)
T ss_dssp T
T ss_pred c
Confidence 4
No 307
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=32.43 E-value=2.2e+02 Score=28.57 Aligned_cols=105 Identities=11% Similarity=0.122 Sum_probs=60.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEE
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~-gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVI 92 (572)
++++||.||.--..-...+. .|... +++++ .+....+..+.... +++-. . .+--++++. .++-+|
T Consensus 3 m~~~~vgiiG~G~~g~~~~~-~l~~~~~~~l~av~d~~~~~~~~a~~----~g~~~----~---~~~~~ll~~-~~~D~V 69 (359)
T 3e18_A 3 LKKYQLVIVGYGGMGSYHVT-LASAADNLEVHGVFDILAEKREAAAQ----KGLKI----Y---ESYEAVLAD-EKVDAV 69 (359)
T ss_dssp CCCEEEEEECCSHHHHHHHH-HHHTSTTEEEEEEECSSHHHHHHHHT----TTCCB----C---SCHHHHHHC-TTCCEE
T ss_pred CCcCcEEEECcCHHHHHHHH-HHHhCCCcEEEEEEcCCHHHHHHHHh----cCCce----e---CCHHHHhcC-CCCCEE
Confidence 35689999998766654444 44444 78876 44444444454433 22211 0 123334432 134445
Q ss_pred EEeCC--CChHHHHHHHHHHHhhhhccccccCCccEEEeCCC--CHHHHHHHHHHHH
Q 008254 93 ITSNI--HCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDKLRNLWQHVV 145 (572)
Q Consensus 93 iLS~~--~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~eeL~~~~q~Vl 145 (572)
+++.. ...+.+.+|++ .|..=|+-||+ +.++....++.+-
T Consensus 70 ~i~tp~~~h~~~~~~al~-------------aGkhVl~EKP~a~~~~ea~~l~~~a~ 113 (359)
T 3e18_A 70 LIATPNDSHKELAISALE-------------AGKHVVCEKPVTMTSEDLLAIMDVAK 113 (359)
T ss_dssp EECSCGGGHHHHHHHHHH-------------TTCEEEEESSCCSSHHHHHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHHH-------------CCCCEEeeCCCcCCHHHHHHHHHHHH
Confidence 44443 34566777777 99999999996 5677777665443
No 308
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=32.10 E-value=1.8e+02 Score=27.12 Aligned_cols=66 Identities=12% Similarity=0.131 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhC-CCEEEEEC------CH---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEe
Q 008254 28 SAAAELKFKLEAM-DYIVSTFY------NE---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITS 95 (572)
Q Consensus 28 ~~~~~L~~lL~~~-gy~V~ta~------~a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS 95 (572)
.+...++..+++. ||.+..+. +. .+.++.+.. ..+|-||+--..++ ...++++.+. .+|||++.
T Consensus 26 ~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~--~~~~~~~~~~~~~iPvV~~~ 101 (304)
T 3gbv_A 26 DVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIE--EQPDGVMFAPTVPQ--YTKGFTDALNELGIPYIYID 101 (304)
T ss_dssp HHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHT--TCCSEEEECCSSGG--GTHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHh--cCCCEEEECCCChH--HHHHHHHHHHHCCCeEEEEe
Confidence 4556677777777 88766431 44 344666666 68998887532221 2245666664 79999887
Q ss_pred CC
Q 008254 96 NI 97 (572)
Q Consensus 96 ~~ 97 (572)
..
T Consensus 102 ~~ 103 (304)
T 3gbv_A 102 SQ 103 (304)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 309
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=31.98 E-value=2.3e+02 Score=23.82 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=41.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHhhcCCCCeeEEEEeCCCCCCCC-hHHHHH---HhcCCcE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-NENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLE---TAKDLPT 91 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~-~a~EAL~~L~e~~~~pDLVIvDv~mPd~md-G~~lLe---~IrdlPV 91 (572)
+.+|.++|.++...+.+. ..++.+.... +..+.++.+.- ..+|+||+-+. + .. -..++. .+....|
T Consensus 29 g~~V~~id~~~~~~~~~~----~~~~~~~~gd~~~~~~l~~~~~--~~~d~vi~~~~--~-~~~n~~~~~~a~~~~~~~i 99 (141)
T 3llv_A 29 GKKVLAVDKSKEKIELLE----DEGFDAVIADPTDESFYRSLDL--EGVSAVLITGS--D-DEFNLKILKALRSVSDVYA 99 (141)
T ss_dssp TCCEEEEESCHHHHHHHH----HTTCEEEECCTTCHHHHHHSCC--TTCSEEEECCS--C-HHHHHHHHHHHHHHCCCCE
T ss_pred CCeEEEEECCHHHHHHHH----HCCCcEEECCCCCHHHHHhCCc--ccCCEEEEecC--C-HHHHHHHHHHHHHhCCceE
Confidence 678999999987655544 3466655433 23455665543 56899987543 3 11 122223 3334556
Q ss_pred EEEeCCCC
Q 008254 92 IITSNIHC 99 (572)
Q Consensus 92 IiLS~~~d 99 (572)
|..+....
T Consensus 100 ia~~~~~~ 107 (141)
T 3llv_A 100 IVRVSSPK 107 (141)
T ss_dssp EEEESCGG
T ss_pred EEEEcChh
Confidence 66555443
No 310
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=31.91 E-value=1.5e+02 Score=27.41 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=47.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHH-HhhcCCCCeeEEEEeCCCCCCCChHHHHHHh
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALS-AFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~-ta~~a~EAL~-~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I 86 (572)
+.+|..||-++...+..+..++..+. .|. ...++.+.+. .+ . ..||+|++|....+ -.++++.+
T Consensus 95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~--~~fD~V~~~~~~~~---~~~~l~~~ 162 (232)
T 3ntv_A 95 DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN-D--KVYDMIFIDAAKAQ---SKKFFEIY 162 (232)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT-T--SCEEEEEEETTSSS---HHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc-c--CCccEEEEcCcHHH---HHHHHHHH
Confidence 57999999999999999999988875 343 6677777665 55 3 57999999975443 34555555
No 311
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=31.90 E-value=56 Score=33.18 Aligned_cols=84 Identities=10% Similarity=0.068 Sum_probs=51.0
Q ss_pred EEEEeCCHHHHHHHHHHHH---hCC---CEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEE
Q 008254 20 VLLLDQDSSAAAELKFKLE---AMD---YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (572)
Q Consensus 20 VLVVDDD~~~~~~L~~lL~---~~g---y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIi 93 (572)
|||-|++-.....+...++ +.. -..+.+.+.+|+.+++.. ..|+|.+|-.-|+ +--+..+.++.-..|.
T Consensus 172 vlikdNHi~~~G~i~~Av~~ar~~~~~~~IeVEv~tl~ea~eAl~a---GaD~I~LDn~~~~--~l~~av~~~~~~v~ie 246 (287)
T 3tqv_A 172 YLIKENHIRSAGGIAKAVTKAKKLDSNKVVEVEVTNLDELNQAIAA---KADIVMLDNFSGE--DIDIAVSIARGKVALE 246 (287)
T ss_dssp EEECTTTC----CHHHHHHHHHHHCTTSCEEEEESSHHHHHHHHHT---TCSEEEEESCCHH--HHHHHHHHHTTTCEEE
T ss_pred EEEeHHHHHHhCCHHHHHHHHHhhCCCCcEEEEeCCHHHHHHHHHc---CCCEEEEcCCCHH--HHHHHHHhhcCCceEE
Confidence 6666655443333333332 112 244589999999999887 5899999974333 2333444555445677
Q ss_pred EeCCCChHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIA 108 (572)
Q Consensus 94 LS~~~d~~~~~kai~ 108 (572)
.|+.-+.+.+.+...
T Consensus 247 aSGGIt~~~i~~~a~ 261 (287)
T 3tqv_A 247 VSGNIDRNSIVAIAK 261 (287)
T ss_dssp EESSCCTTTHHHHHT
T ss_pred EECCCCHHHHHHHHH
Confidence 888888888877666
No 312
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=31.86 E-value=94 Score=29.70 Aligned_cols=66 Identities=11% Similarity=0.184 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---CHH---HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFY---NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~---~a~---EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
.+...+...++..||.+..+. +.+ +.++.+.. ..+|-||+--..+. .....++.+. .+|||++...
T Consensus 20 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~giPvV~~~~~ 93 (330)
T 3uug_A 20 DDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVT--KGVKVLVIASIDGT--TLSDVLKQAGEQGIKVIAYDRL 93 (330)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--HTCSEEEECCSSGG--GGHHHHHHHHHTTCEEEEESSC
T ss_pred HHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHH--cCCCEEEEEcCCch--hHHHHHHHHHHCCCCEEEECCC
Confidence 355667777888899877554 222 34555555 57898887543222 2345566664 7999988654
No 313
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=31.81 E-value=1.1e+02 Score=28.75 Aligned_cols=66 Identities=8% Similarity=0.154 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhCCC-EEEEEC---CH---HHHHHHhhcCCCCeeEEEEeCCCCCCCCh-HHHHHHhc--CCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDY-IVSTFY---NE---NEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy-~V~ta~---~a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG-~~lLe~Ir--dlPVIiLS~~ 97 (572)
.+...+...++..|| .+..+. +. .+.++.+.. ..+|.||+-.. + .+. ...++.+. .+|||++...
T Consensus 19 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~vdgiii~~~--~-~~~~~~~~~~~~~~~iPvV~~~~~ 93 (309)
T 2fvy_A 19 VVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA--KGVKALAINLV--D-PAAAGTVIEKARGQNVPVVFFNKE 93 (309)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCS--S-GGGHHHHHHHHHTTTCCEEEESSC
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH--cCCCEEEEeCC--C-cchhHHHHHHHHHCCCcEEEecCC
Confidence 356667777888898 887554 23 235666666 67998887321 2 122 35566664 7999988664
Q ss_pred C
Q 008254 98 H 98 (572)
Q Consensus 98 ~ 98 (572)
.
T Consensus 94 ~ 94 (309)
T 2fvy_A 94 P 94 (309)
T ss_dssp C
T ss_pred C
Confidence 3
No 314
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=31.81 E-value=91 Score=28.19 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=39.7
Q ss_pred ccCCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 11 WKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 11 ~~~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
+.++ ++ +|.++..... ...|...+..+..+.+..+++++|.. ++.|+++.|.
T Consensus 102 ~~dL-~g-~igv~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~L~~--GrvDa~i~~~ 153 (232)
T 3i6v_A 102 GADL-SG-IVAAQTATIQ-----AGYIAESGATLVEFATPEETIAAVRN--GEADAVFADR 153 (232)
T ss_dssp TCCT-TS-EEEEETTSHH-----HHHHHHSSSEEEEESSHHHHHHHHHT--TSSSEEEEEH
T ss_pred hHHh-CC-CEEEecCchH-----HHHHHhcCCeEEEeCCHHHHHHHHHc--CCcCEEEECh
Confidence 3444 45 8888877643 22333447899999999999999999 8999999875
No 315
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=31.63 E-value=98 Score=29.14 Aligned_cols=64 Identities=8% Similarity=0.076 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhCCCEEEEEC--CHH---HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFY--NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~--~a~---EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
+...+...+++.||.+..+. +.+ +.++.+.. ..+|-||+.-..+. .....++.+. .+|||++..
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~--~~~~~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 20 EWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAA--SGAKGFVICTPDPK--LGSAIVAKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHH--TTCCEEEEECSCGG--GHHHHHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEeCCCch--hhHHHHHHHHHCCCcEEEeCC
Confidence 45566677777799877543 333 34555556 56898887543222 2234566664 799999874
No 316
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=31.62 E-value=1.9e+02 Score=27.52 Aligned_cols=32 Identities=3% Similarity=-0.064 Sum_probs=26.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY 48 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~ 48 (572)
+++|||..-.-.+-..|...|.+.||+|+.+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~ 33 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILT 33 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEe
Confidence 46899999999999999888888899887543
No 317
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=31.28 E-value=1.3e+02 Score=27.31 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=38.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHhhcCCCCeeEEEEeCC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDY-IVS-TFYNENEALSAFSDKPENFHVAIVEVT 72 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy-~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~ 72 (572)
.+|..||-++...+..+..++..+. .+. ...+..+.+.. .. ..||+|++|.-
T Consensus 78 ~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~-~~--~~fD~V~~~~p 131 (202)
T 2fpo_A 78 AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ-KG--TPHNIVFVDPP 131 (202)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS-CC--CCEEEEEECCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh-cC--CCCCEEEECCC
Confidence 3899999999999999999988775 444 45566654432 12 57999999854
No 318
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=31.15 E-value=1.9e+02 Score=25.95 Aligned_cols=68 Identities=12% Similarity=0.141 Sum_probs=47.1
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc
Q 008254 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (572)
Q Consensus 13 ~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir 87 (572)
.++.+.+|..||-++...+..+..++..+. .|. ...++.+.+..+ . . ||+|++|.... +-..+++.+.
T Consensus 77 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~--~-fD~v~~~~~~~---~~~~~l~~~~ 147 (210)
T 3c3p_A 77 AISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ-R--D-IDILFMDCDVF---NGADVLERMN 147 (210)
T ss_dssp TSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC-C--S-EEEEEEETTTS---CHHHHHHHHG
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC-C--C-CCEEEEcCChh---hhHHHHHHHH
Confidence 345467999999999999999998887665 343 556766654332 2 5 99999996433 3455666553
No 319
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=31.03 E-value=1.1e+02 Score=28.45 Aligned_cols=64 Identities=6% Similarity=0.088 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCCCEEEEEC-----CHH---HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFY-----NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~-----~a~---EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
+...++..+++.||.+..+. +.+ +.++.+.. ..+|-||+-....+ .-.+.++.+. .+|||++..
T Consensus 25 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgii~~~~~~~--~~~~~~~~~~~~~iPvV~~~~ 98 (289)
T 3brs_A 25 LVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIK--RKPDVILLAAADYE--KTYDAAKEIKDAGIKLIVIDS 98 (289)
T ss_dssp HHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHH--TCCSEEEECCSCTT--TTHHHHTTTGGGTCEEEEESS
T ss_pred HHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH--hCCCEEEEeCCChH--HhHHHHHHHHHCCCcEEEECC
Confidence 44566667777799887653 222 35666666 57898887432222 2225566664 799998855
No 320
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=31.01 E-value=57 Score=31.05 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=44.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir 87 (572)
+.+|..||-++...+..+..+...+. .+. ...+..+... +.. ..||+|++...+....+-..+++.+.
T Consensus 90 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~--~~fD~v~~~~~l~~~~~~~~~l~~~~ 160 (285)
T 4htf_A 90 GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS-HLE--TPVDLILFHAVLEWVADPRSVLQTLW 160 (285)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG-GCS--SCEEEEEEESCGGGCSCHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh-hcC--CCceEEEECchhhcccCHHHHHHHHH
Confidence 56899999999999999998887664 233 4445444321 233 67999999875543123455666653
No 321
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=30.85 E-value=81 Score=29.79 Aligned_cols=64 Identities=9% Similarity=0.044 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCCCEEEEECC------HHH---HHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN------ENE---ALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~------a~E---AL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
.+...+...+++.||.+..+.. ..+ .++.+.. ..+|-||+--... + -+.++.+. .+|||++..
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~---~-~~~~~~l~~~~iPvV~~~~ 98 (290)
T 2rgy_A 25 TILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIG--RDCDGVVVISHDL---H-DEDLDELHRMHPKMVFLNR 98 (290)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHH--TTCSEEEECCSSS---C-HHHHHHHHHHCSSEEEESS
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHh--cCccEEEEecCCC---C-HHHHHHHhhcCCCEEEEcc
Confidence 4556677778888998876542 134 6777776 6789888743222 2 34455553 799998865
Q ss_pred C
Q 008254 97 I 97 (572)
Q Consensus 97 ~ 97 (572)
.
T Consensus 99 ~ 99 (290)
T 2rgy_A 99 A 99 (290)
T ss_dssp C
T ss_pred c
Confidence 3
No 322
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=30.78 E-value=1e+02 Score=27.95 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=36.8
Q ss_pred cCCCCccEEEEE--eCC------------HHHHHHHHHHHHhCCCEEE---EECCHHHHHH-Hhh---cCCCCeeEEEEe
Q 008254 12 KDFPKGLRVLLL--DQD------------SSAAAELKFKLEAMDYIVS---TFYNENEALS-AFS---DKPENFHVAIVE 70 (572)
Q Consensus 12 ~~~p~~lRVLVV--DDD------------~~~~~~L~~lL~~~gy~V~---ta~~a~EAL~-~L~---e~~~~pDLVIvD 70 (572)
..-|+.+||.|| .|. ......|..+|++.|++|. ++.|..+.+. .+. . ...+|+||+-
T Consensus 10 ~~~~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a-~~~~DlVitt 88 (178)
T 3iwt_A 10 ENAPKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALS-IDEVDVIIST 88 (178)
T ss_dssp ---CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHT-CTTCCEEEEE
T ss_pred hcCCCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh-cCCCCEEEec
Confidence 345777786555 341 2344678999999999775 5555544332 222 2 1568999986
Q ss_pred CCCC
Q 008254 71 VTTS 74 (572)
Q Consensus 71 v~mP 74 (572)
=.+.
T Consensus 89 GG~g 92 (178)
T 3iwt_A 89 GGTG 92 (178)
T ss_dssp SCCS
T ss_pred CCcc
Confidence 5553
No 323
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=30.51 E-value=1e+02 Score=27.08 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=41.0
Q ss_pred ccccCCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 9 SAWKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 9 s~~~~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
..++++ ++.+|.++..... ...|...+ .+..+..+.+..+++++|.. ++.|+++.+.
T Consensus 105 ~~~~dL-~g~~v~~~~g~~~-~~~l~~~~--~~~~~~~~~~~~~~~~~l~~--grvDa~~~~~ 161 (229)
T 2y7i_A 105 HTFADL-KGKKVGLENGTTH-QRYLQDKQ--QAITPVAYDSYLNAFTDLKN--NRLEGVFGDV 161 (229)
T ss_dssp CSTGGG-TTCEEEEETTSHH-HHHHHHHC--TTSEEEEESCHHHHHHHHHT--TSCSEEEEEH
T ss_pred CCHHHH-CCCEEEEecCCcH-HHHHHHhC--CCCeEEecCCHHHHHHHHHc--CCcCEEEech
Confidence 334454 4678888877654 23333322 25788899999999999999 8999999874
No 324
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=30.46 E-value=1.1e+02 Score=28.12 Aligned_cols=66 Identities=6% Similarity=0.024 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEC-----CHH---HHHHHhhcCCCC-eeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTFY-----NEN---EALSAFSDKPEN-FHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~-----~a~---EAL~~L~e~~~~-pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
.+...+...+++.||.+..+. +.+ ++++.+.. .. +|-||+--.... ...+.++.+. .+|||++..
T Consensus 17 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~vdgii~~~~~~~--~~~~~~~~~~~~~ipvV~~~~ 92 (276)
T 3ksm_A 17 QVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLS--QAPPDALILAPNSAE--DLTPSVAQYRARNIPVLVVDS 92 (276)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHH--HSCCSEEEECCSSTT--TTHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHH--hCCCCEEEEeCCCHH--HHHHHHHHHHHCCCcEEEEec
Confidence 356677777778899888654 332 35666665 46 898887543222 3455666664 799999865
Q ss_pred C
Q 008254 97 I 97 (572)
Q Consensus 97 ~ 97 (572)
.
T Consensus 93 ~ 93 (276)
T 3ksm_A 93 D 93 (276)
T ss_dssp C
T ss_pred C
Confidence 4
No 325
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=30.21 E-value=60 Score=31.36 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=32.8
Q ss_pred hHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 79 SFKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 79 G~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
.++++++++ ++||++-.+..+.+.+.+++. .||+.+++-
T Consensus 189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~-------------~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQ-------------WGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-------------TTCSEEEEC
T ss_pred HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHH-------------cCCCEEEEC
Confidence 456777776 799999888888999999888 999999874
No 326
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=30.21 E-value=84 Score=32.87 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=40.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC---C------EE-EEECCHHHHHHHhhcCCCCeeEEEEeCCC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMD---Y------IV-STFYNENEALSAFSDKPENFHVAIVEVTT 73 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~g---y------~V-~ta~~a~EAL~~L~e~~~~pDLVIvDv~m 73 (572)
.+|.+||-|+.+.+..+..|...+ + .+ +...|+.+.|+.+......||+||+|..-
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d 277 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTA 277 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCC
Confidence 589999999999999998875321 1 23 36789988888652111679999999865
No 327
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=30.08 E-value=2.1e+02 Score=28.46 Aligned_cols=106 Identities=12% Similarity=0.049 Sum_probs=62.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~-~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIi 93 (572)
+++||.||.--..-...+..+.+. .+++++ .+....+..+.+.+ .+.+-.. .+--++++. .++-+|+
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~---~~~~~~~-------~~~~~ll~~-~~~D~V~ 80 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVE---RTGARGH-------ASLTDMLAQ-TDADIVI 80 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHH---HHCCEEE-------SCHHHHHHH-CCCSEEE
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHH---HcCCcee-------CCHHHHhcC-CCCCEEE
Confidence 568999999876665556555554 478876 45544444444433 1332221 123344443 2444555
Q ss_pred EeCCC--ChHHHHHHHHHHHhhhhccccccCCccEEEeCCC--CHHHHHHHHHHHH
Q 008254 94 TSNIH--CLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDKLRNLWQHVV 145 (572)
Q Consensus 94 LS~~~--d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~eeL~~~~q~Vl 145 (572)
++... ..+.+.+|++ .|..=|+-||+ +.++....++.+-
T Consensus 81 i~tp~~~h~~~~~~al~-------------~gk~v~~EKP~a~~~~~~~~l~~~a~ 123 (354)
T 3q2i_A 81 LTTPSGLHPTQSIECSE-------------AGFHVMTEKPMATRWEDGLEMVKAAD 123 (354)
T ss_dssp ECSCGGGHHHHHHHHHH-------------TTCEEEECSSSCSSHHHHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHHHH-------------CCCCEEEeCCCcCCHHHHHHHHHHHH
Confidence 54433 3466677777 99999999996 5677776555443
No 328
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=30.08 E-value=1e+02 Score=28.37 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
+...+...+++.||.+..+.. . .+.++.+.. ..+|-||+--..+. ..+.++.+. .+|||++...
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~---~~~~~~~~~~~~iPvV~~~~~ 91 (272)
T 3o74_A 20 IAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRA--RRCDALFVASCLPP---EDDSYRELQDKGLPVIAIDRR 91 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCCCCS---SCCHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEecCccc---cHHHHHHHHHcCCCEEEEccC
Confidence 456677777788998875542 2 245666666 67888887443322 123444443 7999988654
No 329
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=30.04 E-value=75 Score=30.69 Aligned_cols=75 Identities=8% Similarity=0.037 Sum_probs=46.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEE
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIIT 94 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiL 94 (572)
..+|+|||..-.-.+-..|...|.+.||+|+.+....+.+..+.. ..+.++..|+. + --.+.+.+..+-+|+.
T Consensus 11 ~~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~--~~~~~~~~Dl~--d---~~~~~~~~~~~d~vih 83 (342)
T 2x4g_A 11 GAHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAY--LEPECRVAEML--D---HAGLERALRGLDGVIF 83 (342)
T ss_dssp -CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGG--GCCEEEECCTT--C---HHHHHHHTTTCSEEEE
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhcc--CCeEEEEecCC--C---HHHHHHHHcCCCEEEE
Confidence 345699999999999999998888889998865543332232333 24566666653 2 2233344445556665
Q ss_pred eC
Q 008254 95 SN 96 (572)
Q Consensus 95 S~ 96 (572)
.+
T Consensus 84 ~a 85 (342)
T 2x4g_A 84 SA 85 (342)
T ss_dssp C-
T ss_pred CC
Confidence 44
No 330
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=30.03 E-value=1.4e+02 Score=27.09 Aligned_cols=73 Identities=11% Similarity=0.067 Sum_probs=44.6
Q ss_pred EEEEEeCCHHHHHHHHHHHH-hCCCEEEEECCHHH-HHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEeC
Q 008254 19 RVLLLDQDSSAAAELKFKLE-AMDYIVSTFYNENE-ALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~-~~gy~V~ta~~a~E-AL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS~ 96 (572)
+|||..-.-.+-..+...|. ..|+.|+.+....+ .++.+........++..|+. + --++.+.+..+-+|+...
T Consensus 7 ~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~--d---~~~~~~~~~~~d~vv~~a 81 (221)
T 3r6d_A 7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQ--N---PGXLEQAVTNAEVVFVGA 81 (221)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTT--C---HHHHHHHHTTCSEEEESC
T ss_pred EEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCC--C---HHHHHHHHcCCCEEEEcC
Confidence 49999988888888888777 78999886554444 55444211145566666663 2 223333444566666554
No 331
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=30.01 E-value=96 Score=27.78 Aligned_cols=54 Identities=17% Similarity=0.045 Sum_probs=38.7
Q ss_pred ccCCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 11 WKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 11 ~~~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
++++ ++.+|.++..... ...+.. ..+..+..+.+..+++++|.. ++.|+++.|.
T Consensus 113 ~~dL-~g~~i~v~~g~~~-~~~l~~---~~~~~~~~~~~~~~~~~~L~~--g~vDa~~~~~ 166 (242)
T 3del_B 113 LPLT-QYRSVAVQTGTYQ-EAYLQS---LSEVHIRSFDSTLEVLMEVMH--GKSPVAVLEP 166 (242)
T ss_dssp CCGG-GSSCEEEETTSHH-HHHHHH---STTCCEEEESSHHHHHHHHHT--TSSSEEEECH
T ss_pred HHHh-CCCEEEEEcCcHH-HHHHHh---CCCceEEEECCHHHHHHHHHc--CCCCEEEecH
Confidence 3444 4668888766543 333333 235688899999999999999 8999999864
No 332
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=29.99 E-value=1.3e+02 Score=28.18 Aligned_cols=63 Identities=13% Similarity=0.078 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhCCCEEEEE-CCH------HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTF-YNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta-~~a------~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
.+...+...+++.||.+..+ .+. .++++.+.. ..+|-||+--.... . +.++.+. .+|||++..
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~-~---~~~~~l~~~~iPvV~~~~ 96 (290)
T 3clk_A 25 QILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIE--RPVMGILLLSIALT-D---DNLQLLQSSDVPYCFLSM 96 (290)
T ss_dssp HHHHHHHHHHHTTTCEEEEEC----------CHHHHHHS--SCCSEEEEESCC--------CHHHHHCC--CEEEESC
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEecccCC-H---HHHHHHHhCCCCEEEEcC
Confidence 45566777788889988766 321 235666766 67888776432222 1 3344443 799998855
No 333
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=29.99 E-value=3.5e+02 Score=25.27 Aligned_cols=65 Identities=11% Similarity=0.130 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---CH---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFY---NE---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~---~a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
.+...+...++..||.+..+. +. .+.++.+.. ..+|-||+--..+. ...+++.+. .+|||++...
T Consensus 37 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgii~~~~~~~---~~~~~~~~~~~~iPvV~~~~~ 109 (293)
T 2iks_A 37 RIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQ--RQVDAIIVSTSLPP---EHPFYQRWANDPFPIVALDRA 109 (293)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCSSCT---TCHHHHTTTTSSSCEEEEESC
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHH--cCCCEEEEeCCCCC---cHHHHHHHHhCCCCEEEECCc
Confidence 455667777778899887543 22 235666666 57898887433222 223556664 7999988654
No 334
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=29.87 E-value=1.5e+02 Score=27.98 Aligned_cols=66 Identities=12% Similarity=0.240 Sum_probs=46.4
Q ss_pred CCHHHHHHHhhcCCCCee-EEEEeCCCCCCCCh---HHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccc
Q 008254 48 YNENEALSAFSDKPENFH-VAIVEVTTSNTDGS---FKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNF 120 (572)
Q Consensus 48 ~~a~EAL~~L~e~~~~pD-LVIvDv~mPd~mdG---~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~ 120 (572)
.+..+.++.+.+ ...| +.++|..... ... +++++.++ ++|||+.....+.+.+.+++.
T Consensus 31 ~d~~~~a~~~~~--~Gad~i~v~d~~~~~-~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~------------ 95 (252)
T 1ka9_F 31 GDPVEAARAYDE--AGADELVFLDISATH-EERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLL------------ 95 (252)
T ss_dssp TCHHHHHHHHHH--HTCSCEEEEECCSST-TCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHH------------
T ss_pred CCHHHHHHHHHH--cCCCEEEEEcCCccc-cCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHH------------
Confidence 356666666665 4455 4556765433 222 45566665 799999999999999999998
Q ss_pred cCCccEEEe
Q 008254 121 QLGAVEFLR 129 (572)
Q Consensus 121 ~~GA~dYL~ 129 (572)
.||+..++
T Consensus 96 -~Gad~V~l 103 (252)
T 1ka9_F 96 -SGADKVSV 103 (252)
T ss_dssp -HTCSEEEE
T ss_pred -cCCCEEEE
Confidence 99988877
No 335
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=29.75 E-value=1.2e+02 Score=30.30 Aligned_cols=104 Identities=18% Similarity=0.096 Sum_probs=58.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EEC-CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~-gy~V~-ta~-~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVI 92 (572)
+++||.||.--..-...+...|... +++|+ .+. +.+.+-+.... +.+-.. . +--++++. .++-+|
T Consensus 26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----~g~~~~----~---~~~~ll~~-~~~D~V 93 (350)
T 3rc1_A 26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTER----FGGEPV----E---GYPALLER-DDVDAV 93 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHH----HCSEEE----E---SHHHHHTC-TTCSEE
T ss_pred CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHH----cCCCCc----C---CHHHHhcC-CCCCEE
Confidence 4689999998876653343444444 78776 443 33333333333 222221 1 11222221 134455
Q ss_pred EEeCC--CChHHHHHHHHHHHhhhhccccccCCccEEEeCCC--CHHHHHHHHHHH
Q 008254 93 ITSNI--HCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDKLRNLWQHV 144 (572)
Q Consensus 93 iLS~~--~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~eeL~~~~q~V 144 (572)
+++.. ...+.+..|++ .|..=|+-||+ +.++...+++.+
T Consensus 94 ~i~tp~~~h~~~~~~al~-------------aGk~Vl~EKP~a~~~~ea~~l~~~a 136 (350)
T 3rc1_A 94 YVPLPAVLHAEWIDRALR-------------AGKHVLAEKPLTTDRPQAERLFAVA 136 (350)
T ss_dssp EECCCGGGHHHHHHHHHH-------------TTCEEEEESSSCSSHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHHH-------------CCCcEEEeCCCCCCHHHHHHHHHHH
Confidence 55443 33566777777 99999999997 567777755544
No 336
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=29.69 E-value=47 Score=31.67 Aligned_cols=37 Identities=14% Similarity=-0.016 Sum_probs=31.4
Q ss_pred ccCCCChhHHHHHHHHHhcchhhhhhccccccccccc
Q 008254 156 LSDSLKPVKESVVSMLHLKLENGESKNEKSENTEYVL 192 (572)
Q Consensus 156 ~~~sLt~RE~eVL~ll~~~len~e~~~e~s~~~e~v~ 192 (572)
....||+||++|+.++..|..+++......++..+|.
T Consensus 172 ~~~~Lt~re~~vl~~~~~G~s~~eIa~~l~is~~tV~ 208 (237)
T 3szt_A 172 SNVRLTARETEMLKWTAVGKTYGEIGLILSIDQRTVK 208 (237)
T ss_dssp GGCCCCHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHH
Confidence 3567999999999999999999999887777766654
No 337
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=29.59 E-value=1.1e+02 Score=29.75 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEeCC
Q 008254 29 AAAELKFKLEAMDYIVSTFY---NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNI 97 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~---~a~---EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS~~ 97 (572)
+...+...++..||.+..+. +.+ +.++.+.. ..+|-||+--.... ..-.+++.....+|||++...
T Consensus 76 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~-~~~~~~l~~~~~iPvV~~~~~ 147 (340)
T 1qpz_A 76 IIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQ--KRVDGLLVMCSEYP-EPLLAMLEEYRHIPMVVMDWG 147 (340)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCSCCC-HHHHHHHHTTTTSCEEEEEES
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEEeCCCCC-hHHHHHHHhhCCCCEEEEecc
Confidence 55667777778899887653 222 24666666 67888886422111 112334433347999988653
No 338
>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}
Probab=29.56 E-value=65 Score=28.51 Aligned_cols=56 Identities=20% Similarity=0.109 Sum_probs=35.0
Q ss_pred CCCccEEEEEeCCH-HHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCC
Q 008254 14 FPKGLRVLLLDQDS-SAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (572)
Q Consensus 14 ~p~~lRVLVVDDD~-~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd 75 (572)
-++.++|.|||.|. .....|...|. ....+. .+.+.++|.+.+++ +..+.+|. .|.
T Consensus 7 ~~~~~~vaVvd~D~s~~s~~l~~~l~-~~~~~~~~~~s~~ea~~~l~~--g~~~~~l~---IP~ 64 (156)
T 3cni_A 7 STVGQKVAIVREDTGTIAELAEKALG-NMVDIVYAGSDLKEAEEAVKK--EKAPAIIV---IPK 64 (156)
T ss_dssp ----CEEEEEECCCSHHHHHHHHHHH-TSSEEEEEESCHHHHHHHHHH--HTCSEEEE---ECT
T ss_pred CCCCCcEEEEECCCCHHHHHHHHHhc-CcEEEEecCCCHHHHHHHHHc--CCeeEEEE---ECc
Confidence 34668999998764 33344555555 333332 24799999999999 77877764 465
No 339
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=29.45 E-value=2.7e+02 Score=26.88 Aligned_cols=75 Identities=12% Similarity=0.110 Sum_probs=44.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEE-CCHHHHHHHhhcC--CCCeeEEEEeCCCCCCCChHHHHHHhcCC
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDY--IVSTF-YNENEALSAFSDK--PENFHVAIVEVTTSNTDGSFKFLETAKDL 89 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta-~~a~EAL~~L~e~--~~~pDLVIvDv~mPd~mdG~~lLe~Irdl 89 (572)
..+.+|+++-....+.+..+.++...+. ++..+ .+.++|+...++. ...+|+||+- ..-.++|+..-++
T Consensus 10 ~~m~~ii~i~~~~~L~~~~~~i~~e~~~~~~I~vi~~~le~av~~a~~~~~~~~~dVIISR------Ggta~~Lr~~~~i 83 (225)
T 2pju_A 10 NDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIAA------GSNGAYLKSRLSV 83 (225)
T ss_dssp ---CCEEEEECCHHHHHHHHHHHTTTTTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEEEE------HHHHHHHHTTCSS
T ss_pred ccCCCEEEEEchHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHHHhcCCCeEEEeC------ChHHHHHHhhCCC
Confidence 3455788888888888888888876553 45443 4567777655331 1358988863 1223344443355
Q ss_pred cEEEEe
Q 008254 90 PTIITS 95 (572)
Q Consensus 90 PVIiLS 95 (572)
|||-+.
T Consensus 84 PVV~I~ 89 (225)
T 2pju_A 84 PVILIK 89 (225)
T ss_dssp CEEEEC
T ss_pred CEEEec
Confidence 555543
No 340
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=29.25 E-value=22 Score=29.44 Aligned_cols=37 Identities=14% Similarity=0.110 Sum_probs=29.4
Q ss_pred ccCCCChhHHHHHHHHHhcchhhhhhccccccccccc
Q 008254 156 LSDSLKPVKESVVSMLHLKLENGESKNEKSENTEYVL 192 (572)
Q Consensus 156 ~~~sLt~RE~eVL~ll~~~len~e~~~e~s~~~e~v~ 192 (572)
....||++|++|+.++..|..+++......+...+|.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~G~s~~eIA~~L~iS~~TV~ 62 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEKGFTNQEIADALHLSKRSIE 62 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHH
T ss_pred cccCCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHH
Confidence 3567999999999999999999999887777666553
No 341
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=29.25 E-value=2.7e+02 Score=27.45 Aligned_cols=135 Identities=10% Similarity=0.101 Sum_probs=66.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIIT 94 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~-~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiL 94 (572)
++||.||.--..-...+..+... .+++++ .+....+..+.+.+. ..+++... .+--++++. .++-+|++
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~-~g~~~~~~-------~~~~~ll~~-~~~D~V~i 72 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQ-YQLNATVY-------PNDDSLLAD-ENVDAVLV 72 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHH-TTCCCEEE-------SSHHHHHHC-TTCCEEEE
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH-hCCCCeee-------CCHHHHhcC-CCCCEEEE
Confidence 36888888766555555554423 467766 444333434333321 22111111 122233332 12444444
Q ss_pred eCC--CChHHHHHHHHHHHhhhhccccccCCccEEEeCCC--CHHHHHHHHHHHHHHHHhcCCCcccCCCChhHHHHHHH
Q 008254 95 SNI--HCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSM 170 (572)
Q Consensus 95 S~~--~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~eeL~~~~q~Vlrr~~~~~~~~~~~sLt~RE~eVL~l 170 (572)
+.. ...+.+.+|++ .|..=|+-||+ +.++....++.+-+............++.+.-+.+.++
T Consensus 73 ~tp~~~h~~~~~~al~-------------~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~~~v~~~~r~~p~~~~~k~~ 139 (344)
T 3mz0_A 73 TSWGPAHESSVLKAIK-------------AQKYVFCEKPLATTAEGCMRIVEEEIKVGKRLVQVGFMRRYDSGYVQLKEA 139 (344)
T ss_dssp CSCGGGHHHHHHHHHH-------------TTCEEEECSCSCSSHHHHHHHHHHHHHHSSCCEEECCGGGGSHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHH-------------CCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEEEEEecccccCHHHHHHHHH
Confidence 433 33566677777 99989999996 56777775554433211110001123345555555555
Q ss_pred HHh
Q 008254 171 LHL 173 (572)
Q Consensus 171 l~~ 173 (572)
+..
T Consensus 140 i~~ 142 (344)
T 3mz0_A 140 LDN 142 (344)
T ss_dssp HHT
T ss_pred HHc
Confidence 544
No 342
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=29.14 E-value=1.3e+02 Score=30.10 Aligned_cols=66 Identities=12% Similarity=0.095 Sum_probs=34.5
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCEEEE---E----CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh
Q 008254 18 LRVLLLDQDSS----AAAELKFKLEAMDYIVST---F----YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (572)
Q Consensus 18 lRVLVVDDD~~----~~~~L~~lL~~~gy~V~t---a----~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I 86 (572)
-+|.||.++.. ..+.++..+++.|.+|+. + .+....+..++. ..+|+|++....++ +...+++.+
T Consensus 165 ~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~--~~~d~v~~~~~~~~--~~~~~~~~~ 240 (419)
T 3h5l_A 165 NKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRA--DPPAVIVVTHFYPQ--DQALFMNQF 240 (419)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHH--SCCSEEEECCCCHH--HHHHHHHHH
T ss_pred CEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHh--cCCCEEEEccccCc--hHHHHHHHH
Confidence 45655554443 334444555555665542 1 244556666666 56777776432222 345566666
Q ss_pred c
Q 008254 87 K 87 (572)
Q Consensus 87 r 87 (572)
+
T Consensus 241 ~ 241 (419)
T 3h5l_A 241 M 241 (419)
T ss_dssp T
T ss_pred H
Confidence 5
No 343
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=28.97 E-value=89 Score=29.56 Aligned_cols=72 Identities=10% Similarity=0.017 Sum_probs=43.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEeC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAM-DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~-gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS~ 96 (572)
|+|||..-.-.+-..|...|... |+.|..+....+.+..+.. ....++..|+. +--.+.+.+..+-+|+..+
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~--~~v~~~~~D~~-----d~~~l~~~~~~~d~vi~~a 73 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWR--GKVSVRQLDYF-----NQESMVEAFKGMDTVVFIP 73 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGB--TTBEEEECCTT-----CHHHHHHHTTTCSEEEECC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhh--CCCEEEEcCCC-----CHHHHHHHHhCCCEEEEeC
Confidence 46889888888877777778776 8888755443333333333 45666766663 2223334444555555543
No 344
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=28.97 E-value=1.4e+02 Score=30.02 Aligned_cols=91 Identities=11% Similarity=0.021 Sum_probs=57.7
Q ss_pred EEEEeCCHHHH----HHHHHHHHhCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcC---Cc
Q 008254 20 VLLLDQDSSAA----AELKFKLEAMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKD---LP 90 (572)
Q Consensus 20 VLVVDDD~~~~----~~L~~lL~~~g--y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ird---lP 90 (572)
|||-|++-... +.++..-+..+ -..+.+.+.+++.+++.. ..|+|++|-.-|. +-.+.++.++. -.
T Consensus 168 vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~a---GaD~I~LDn~~~~--~~~~~v~~l~~~~~~v 242 (284)
T 1qpo_A 168 ALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPE---KPELILLDNFAVW--QTQTAVQRRDSRAPTV 242 (284)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGG---CCSEEEEETCCHH--HHHHHHHHHHHHCTTC
T ss_pred hcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhhccCCCe
Confidence 66666654332 23333333334 345588899999999887 5799999974443 33344444442 34
Q ss_pred EEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEE
Q 008254 91 TIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFL 128 (572)
Q Consensus 91 VIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL 128 (572)
.|..|+.-+.+.+.+... .|++.|.
T Consensus 243 ~ieaSGGIt~~~i~~~a~-------------tGVD~is 267 (284)
T 1qpo_A 243 MLESSGGLSLQTAATYAE-------------TGVDYLA 267 (284)
T ss_dssp EEEEESSCCTTTHHHHHH-------------TTCSEEE
T ss_pred EEEEECCCCHHHHHHHHh-------------cCCCEEE
Confidence 667788778888877777 8876654
No 345
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=28.96 E-value=2.2e+02 Score=27.65 Aligned_cols=85 Identities=13% Similarity=0.082 Sum_probs=52.6
Q ss_pred HHHHHHHHHhCCCEEE-----EECCHHHHHHHhhcCCCCeeEEEE---------eCCCCC--------CCCh-------H
Q 008254 30 AAELKFKLEAMDYIVS-----TFYNENEALSAFSDKPENFHVAIV---------EVTTSN--------TDGS-------F 80 (572)
Q Consensus 30 ~~~L~~lL~~~gy~V~-----ta~~a~EAL~~L~e~~~~pDLVIv---------Dv~mPd--------~mdG-------~ 80 (572)
.+.++.+-+..+.-|. .+.+..+..+.+.+ ...|.|++ +..... ...| +
T Consensus 153 ~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~--~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~ 230 (311)
T 1ep3_A 153 AALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEA--AGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVAL 230 (311)
T ss_dssp HHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHH--TTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHH--cCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHH
Confidence 4444444444455333 12355676667776 57888877 332110 0111 4
Q ss_pred HHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 81 KFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 81 ~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
++++.++ ++|||..-+..+.+.+.+++. .||+...+
T Consensus 231 ~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~-------------~GAd~V~v 269 (311)
T 1ep3_A 231 KLIHQVAQDVDIPIIGMGGVANAQDVLEMYM-------------AGASAVAV 269 (311)
T ss_dssp HHHHHHHTTCSSCEEECSSCCSHHHHHHHHH-------------HTCSEEEE
T ss_pred HHHHHHHHhcCCCEEEECCcCCHHHHHHHHH-------------cCCCEEEE
Confidence 6777775 799998888888999999998 89887643
No 346
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=28.94 E-value=2.3e+02 Score=27.19 Aligned_cols=61 Identities=8% Similarity=0.050 Sum_probs=42.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCC
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDY-IVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy-~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd 75 (572)
+...+|..+|-++...+.++..++..|. .|. ...++.+....+......||+|++|.-..+
T Consensus 106 ~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~ 168 (274)
T 3ajd_A 106 KNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSG 168 (274)
T ss_dssp TTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEECCC-
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcCCCCC
Confidence 3346899999999999999999998876 343 566777655433211157999999964433
No 347
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=28.78 E-value=82 Score=33.00 Aligned_cols=90 Identities=17% Similarity=0.223 Sum_probs=47.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc----CCcE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~-~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir----dlPV 91 (572)
+..|+|||.|+...+.++ ..|+.+.... +-.+.|..+.- ...|+||+-+ ++...-..++..++ ++.|
T Consensus 27 g~~vvvId~d~~~v~~~~----~~g~~vi~GDat~~~~L~~agi--~~A~~viv~~--~~~~~n~~i~~~ar~~~p~~~I 98 (413)
T 3l9w_A 27 GVKMVVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESAGA--AKAEVLINAI--DDPQTNLQLTEMVKEHFPHLQI 98 (413)
T ss_dssp TCCEEEEECCHHHHHHHH----HTTCCCEESCTTCHHHHHHTTT--TTCSEEEECC--SSHHHHHHHHHHHHHHCTTCEE
T ss_pred CCCEEEEECCHHHHHHHH----hCCCeEEEcCCCCHHHHHhcCC--CccCEEEECC--CChHHHHHHHHHHHHhCCCCeE
Confidence 466777777776654443 3466544322 22345555443 4577777744 33012233333333 5666
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
|+-+.. ......... +||+..+.
T Consensus 99 iara~~--~~~~~~L~~-------------~Gad~Vi~ 121 (413)
T 3l9w_A 99 IARARD--VDHYIRLRQ-------------AGVEKPER 121 (413)
T ss_dssp EEEESS--HHHHHHHHH-------------TTCSSCEE
T ss_pred EEEECC--HHHHHHHHH-------------CCCCEEEC
Confidence 666553 333434444 89887664
No 348
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=28.57 E-value=1e+02 Score=28.49 Aligned_cols=51 Identities=8% Similarity=0.004 Sum_probs=39.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 19 RVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
+|..||-++...+..+..+...+..+. ...+..+.+.-+.. ..||+|++|.
T Consensus 85 ~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~fD~V~~d~ 136 (236)
T 1zx0_A 85 EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPD--GHFDGILYDT 136 (236)
T ss_dssp EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCT--TCEEEEEECC
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCC--CceEEEEECC
Confidence 799999999999999998877777665 56677765444555 6799999953
No 349
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=28.37 E-value=1e+02 Score=30.28 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=24.1
Q ss_pred CCCCccEEEEEeC----CHHHHHHHHHHHHhCCCEEEEECC
Q 008254 13 DFPKGLRVLLLDQ----DSSAAAELKFKLEAMDYIVSTFYN 49 (572)
Q Consensus 13 ~~p~~lRVLVVDD----D~~~~~~L~~lL~~~gy~V~ta~~ 49 (572)
-+.+.||||++-- +-.-.-.|...|.+.|++|+.++.
T Consensus 18 ~~~~~MRIL~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~ 58 (400)
T 4amg_A 18 LYFQSMRALFITSPGLSHILPTVPLAQALRALGHEVRYATG 58 (400)
T ss_dssp ---CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCCeEEEECCCchhHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3456689999854 222334578888889999986653
No 350
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=28.37 E-value=1.5e+02 Score=27.25 Aligned_cols=63 Identities=11% Similarity=0.111 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---CH---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 28 SAAAELKFKLEAMDYIVSTFY---NE---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~---~a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
.+...+...+++.||.+..+. +. .+.++.+.. ..+|-||+--...+ -+.++.+. .+|||++..
T Consensus 20 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgii~~~~~~~----~~~~~~l~~~~iPvV~~~~ 90 (275)
T 3d8u_A 20 HFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLE--SRPAGVVLFGSEHS----QRTHQLLEASNTPVLEIAE 90 (275)
T ss_dssp HHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHT--SCCCCEEEESSCCC----HHHHHHHHHHTCCEEEESS
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHh--cCCCEEEEeCCCCC----HHHHHHHHhCCCCEEEEee
Confidence 455667778888899876442 22 234666666 67887665432222 24555554 799998855
No 351
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=28.20 E-value=1.9e+02 Score=26.02 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=41.6
Q ss_pred ccccCCCC-ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 9 SAWKDFPK-GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 9 s~~~~~p~-~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
..++++.. +.+|.++...... ..|...+ .+..+..+.+..+++++|.. +++|++|.|.
T Consensus 106 ~~~~dL~~~g~~i~v~~g~~~~-~~l~~~~--~~~~~~~~~~~~~~~~~L~~--GrvDa~i~~~ 164 (245)
T 3k4u_A 106 KSYKDLDKPELTLVTKFGVSAE-YAAKRLF--KNAKLKTYDTEAEAVQEVLN--GKADMFIFDL 164 (245)
T ss_dssp CSGGGGCCSSCEEEEETTSHHH-HHHHHHC--SSSEEEEESSHHHHHHHHHS--SSSEEEEEEH
T ss_pred CCHHHhccCCcEEEEeCCcHHH-HHHHhhC--CcCCEEEeCCHHHHHHHHHc--CCCcEEEEcH
Confidence 34455542 7788888776443 3333332 25788999999999999999 8999999874
No 352
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=28.07 E-value=2.5e+02 Score=26.21 Aligned_cols=83 Identities=14% Similarity=0.166 Sum_probs=54.9
Q ss_pred HHHHHHHHhC-CCEEE-EECCHHHHHHHhhcCCCCeeEE---EEeCCCCCC----CChHHHHHHhc--CCcEEEEeCCCC
Q 008254 31 AELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVA---IVEVTTSNT----DGSFKFLETAK--DLPTIITSNIHC 99 (572)
Q Consensus 31 ~~L~~lL~~~-gy~V~-ta~~a~EAL~~L~e~~~~pDLV---IvDv~mPd~----mdG~~lLe~Ir--dlPVIiLS~~~d 99 (572)
+.++.+-+.. +..|. .+.+.+++..++.. ..|+| +..+. +.. ...+++++.++ ++|||...+..+
T Consensus 122 ~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~---Gad~i~~~v~g~~-~~~~~~~~~~~~~i~~~~~~~ipvia~GGI~s 197 (234)
T 1yxy_A 122 SFIRQVKEKYPNQLLMADISTFDEGLVAHQA---GIDFVGTTLSGYT-PYSRQEAGPDVALIEALCKAGIAVIAEGKIHS 197 (234)
T ss_dssp HHHHHHHHHCTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSS-TTSCCSSSCCHHHHHHHHHTTCCEEEESCCCS
T ss_pred HHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEeeeccccC-CCCcCCCCCCHHHHHHHHhCCCCEEEECCCCC
Confidence 3344433333 55444 66788888777665 57887 33321 220 12367777775 799999888888
Q ss_pred hHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 100 LSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 100 ~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
.+.+.+++. .||+.+++=
T Consensus 198 ~~~~~~~~~-------------~Gad~v~vG 215 (234)
T 1yxy_A 198 PEEAKKIND-------------LGVAGIVVG 215 (234)
T ss_dssp HHHHHHHHT-------------TCCSEEEEC
T ss_pred HHHHHHHHH-------------CCCCEEEEc
Confidence 999999988 999988763
No 353
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=28.00 E-value=1.3e+02 Score=26.90 Aligned_cols=35 Identities=9% Similarity=0.016 Sum_probs=22.2
Q ss_pred CCCCccEEEEE--eCCHHHHHHHHHHHHhCCCEEEEEC
Q 008254 13 DFPKGLRVLLL--DQDSSAAAELKFKLEAMDYIVSTFY 48 (572)
Q Consensus 13 ~~p~~lRVLVV--DDD~~~~~~L~~lL~~~gy~V~ta~ 48 (572)
.+|..= |||- |.+......+...|...||.+....
T Consensus 21 ~lP~~g-vliSv~d~dK~~l~~~a~~l~~lGf~i~AT~ 57 (143)
T 2yvq_A 21 KIPQKG-ILIGIQQSFRPRFLGVAEQLHNEGFKLFATE 57 (143)
T ss_dssp CCCCSE-EEEECCGGGHHHHHHHHHHHHTTTCEEEEEH
T ss_pred CCCCCC-EEEEecccchHHHHHHHHHHHHCCCEEEECc
Confidence 455432 6653 3346666667778888999877544
No 354
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=27.92 E-value=49 Score=27.90 Aligned_cols=35 Identities=11% Similarity=0.180 Sum_probs=29.3
Q ss_pred cCCCChhHHHHHHHHHhcchhhhhhcccccccccc
Q 008254 157 SDSLKPVKESVVSMLHLKLENGESKNEKSENTEYV 191 (572)
Q Consensus 157 ~~sLt~RE~eVL~ll~~~len~e~~~e~s~~~e~v 191 (572)
...|+++|++|+.++..++.+++......+...+|
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~s~~EIA~~L~iS~~TV 66 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTI 66 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHH
T ss_pred cCCCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 57799999999999999999999887766665554
No 355
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.88 E-value=1.2e+02 Score=26.52 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=26.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHH
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALS 55 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~ 55 (572)
.-|+|.|.|..-++...+-.+..||+|.++.+..+.-+
T Consensus 78 vliiiydqdqnrleefsrevrrrgfevrtvtspddfkk 115 (134)
T 2l69_A 78 VLIIIYDQDQNRLEEFSREVRRRGFEVRTVTSPDDFKK 115 (134)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHH
T ss_pred EEEEEEeCchhHHHHHHHHHHhcCceEEEecChHHHHH
Confidence 44566677777777777777777777777777766544
No 356
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=27.70 E-value=1.5e+02 Score=28.80 Aligned_cols=53 Identities=17% Similarity=0.160 Sum_probs=38.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC--C----------CEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAM--D----------YIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS 74 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~--g----------y~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mP 74 (572)
..+|..||-++...+..+..+ .. + -.|. ...++.+.+.. . ..||+||+|...+
T Consensus 98 ~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~--~--~~fD~Ii~d~~~~ 163 (281)
T 1mjf_A 98 VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN--N--RGFDVIIADSTDP 163 (281)
T ss_dssp CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH--C--CCEEEEEEECCCC
T ss_pred CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc--c--CCeeEEEECCCCC
Confidence 368999999999999888877 32 2 2333 56777776655 4 6899999997544
No 357
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=27.62 E-value=2.3e+02 Score=28.18 Aligned_cols=106 Identities=12% Similarity=0.098 Sum_probs=59.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC--CCEEE-EECCHHHHHHHhhcCCCCeeE-EEEeCCCCCCCChHHHHHHhcCCc
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAM--DYIVS-TFYNENEALSAFSDKPENFHV-AIVEVTTSNTDGSFKFLETAKDLP 90 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~--gy~V~-ta~~a~EAL~~L~e~~~~pDL-VIvDv~mPd~mdG~~lLe~IrdlP 90 (572)
.+.+||.||.--..........|... +++++ .+....+..+.+.+ .+.+ -+. .+--++|+. .++-
T Consensus 16 ~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~---~~~~~~~~-------~~~~~ll~~-~~vD 84 (340)
T 1zh8_A 16 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAK---MVGNPAVF-------DSYEELLES-GLVD 84 (340)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHH---HHSSCEEE-------SCHHHHHHS-SCCS
T ss_pred CCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHH---HhCCCccc-------CCHHHHhcC-CCCC
Confidence 45689999998744444333444443 57765 44444444444333 1221 111 122333332 1344
Q ss_pred EEEEeCC--CChHHHHHHHHHHHhhhhccccccCCccEEEeCCC--CHHHHHHHHHHH
Q 008254 91 TIITSNI--HCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDKLRNLWQHV 144 (572)
Q Consensus 91 VIiLS~~--~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~eeL~~~~q~V 144 (572)
+|+++.. ...+.+.+|++ .|..=|+-||+ +.++...+++.+
T Consensus 85 ~V~i~tp~~~H~~~~~~al~-------------aGkhVl~EKPla~~~~ea~~l~~~a 129 (340)
T 1zh8_A 85 AVDLTLPVELNLPFIEKALR-------------KGVHVICEKPISTDVETGKKVVELS 129 (340)
T ss_dssp EEEECCCGGGHHHHHHHHHH-------------TTCEEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEeCCchHHHHHHHHHHH-------------CCCcEEEeCCCCCCHHHHHHHHHHH
Confidence 5554443 34577788888 99999999997 777777755544
No 358
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=27.54 E-value=85 Score=26.66 Aligned_cols=48 Identities=27% Similarity=0.417 Sum_probs=37.8
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCCHHHHhhh-CCCCCCHHHHHHhhhhhhh
Q 008254 334 DWTPELHKKFVQAVEQLGVDQAIPSRILELM-KVEGLTRHNVASHLQKYRM 383 (572)
Q Consensus 334 ~Wt~eLh~~Fv~av~~lG~~~a~Pk~il~lM-~v~glt~~~v~SHLQkyr~ 383 (572)
.||.|=...|++|+.++|.+ +|.+--.+= -|+|=|-++|+.|-+++..
T Consensus 10 ~WT~eEd~~L~~al~~~~~~--~~~rW~~IA~~vpGRT~~q~k~ry~~l~~ 58 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYDKD--TPDRWANVARAVEGRTPEEVKKHYEILVE 58 (93)
T ss_dssp SCCHHHHHHHHHHHHHSCTT--CTTHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCC--CCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 69999999999999999854 565443332 3579999999999887753
No 359
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=27.42 E-value=24 Score=35.57 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=56.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---C-CcEEE
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---D-LPTII 93 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---d-lPVIi 93 (572)
|+|.||-......+.|...|++.|++|.......+.+ ..+|+||+ +- .|| -+|..++ + +|||=
T Consensus 30 mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~-------~~~DlvIv---lG--GDG-T~L~aa~~~~~~~PilG 96 (278)
T 1z0s_A 30 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEEL-------ENFDFIVS---VG--GDG-TILRILQKLKRCPPIFG 96 (278)
T ss_dssp CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGG-------GGSSEEEE---EE--CHH-HHHHHHTTCSSCCCEEE
T ss_pred eEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccccccc-------CCCCEEEE---EC--CCH-HHHHHHHHhCCCCcEEE
Confidence 6888885532227788999999999988755432221 24788886 22 245 2333333 4 88887
Q ss_pred EeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 94 TSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 94 LS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
+. .|-.+||. +++.+++..++..++.
T Consensus 97 IN--------------------------~G~lGFLt-~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 97 IN--------------------------TGRVGLLT-HASPENFEVELKKAVE 122 (278)
T ss_dssp EE--------------------------CSSSCTTC-CBBTTBCHHHHHHHHH
T ss_pred EC--------------------------CCCCcccc-ccCHHHHHHHHHHHHh
Confidence 75 34455665 4666777777777776
No 360
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=27.42 E-value=1.7e+02 Score=27.41 Aligned_cols=64 Identities=8% Similarity=0.001 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~------a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
.+...+...+++.||.+..+.. ..+.++.+.. ..+|-||+--.... -+.++.+. .+|||++...
T Consensus 27 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~----~~~~~~l~~~~iPvV~i~~~ 98 (288)
T 3gv0_A 27 QMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILET--GSADGVIISKIEPN----DPRVRFMTERNMPFVTHGRS 98 (288)
T ss_dssp HHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHH--TCCSEEEEESCCTT----CHHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHc--CCccEEEEecCCCC----cHHHHHHhhCCCCEEEECCc
Confidence 3455666677778998876542 2345566666 57887776322222 14455553 7999988654
No 361
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=27.38 E-value=1.2e+02 Score=26.44 Aligned_cols=56 Identities=11% Similarity=0.146 Sum_probs=41.2
Q ss_pred ccCCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 11 WKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 11 ~~~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
++++ ++.+|.++..... ...|...+... ..+..+.+..+++++|.. ++.|+++.|.
T Consensus 104 ~~dL-~g~~v~~~~g~~~-~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~--grvDa~~~~~ 159 (227)
T 3tql_A 104 KQGL-KGKIIGVQGGTTF-DSYLQDSFGNS-ITIQRYPSEEDALMDLTS--GRVDAVVGDT 159 (227)
T ss_dssp TTTT-TTCEEEEETTSHH-HHHHHHHHGGG-SEEEEESSHHHHHHHHTT--TSSSEEESCH
T ss_pred HHHh-CCCEEEEEecccH-HHHHHHhcccc-ceEEEcCCHHHHHHHHHc--CCcCEEEeCh
Confidence 4444 4678888877654 34455544332 788899999999999999 8999999754
No 362
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=27.16 E-value=1.7e+02 Score=27.54 Aligned_cols=66 Identities=9% Similarity=0.022 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCEEEEEC-----CH---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCCC
Q 008254 29 AAAELKFKLEAMDYIVSTFY-----NE---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIH 98 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~-----~a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~~ 98 (572)
+...+...++..||.+..+. +. .+.++.+.. ..+|-||+-....+ .-.+.++.+. .+|||++....
T Consensus 19 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~~~~~~ 94 (288)
T 1gud_A 19 MKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSN--KNYKGIAFAPLSSV--NLVMPVARAWKKGIYLVNLDEKI 94 (288)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHT--SSEEEEEECCSSSS--TTHHHHHHHHHTTCEEEEESSCC
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChH--HHHHHHHHHHHCCCeEEEECCCC
Confidence 44556667777799877553 22 234566666 67998887432111 1234555553 79999886543
No 363
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=26.95 E-value=1.3e+02 Score=28.73 Aligned_cols=62 Identities=23% Similarity=0.185 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhCCC------EEEEEC---CH---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh-cCCcEEEE
Q 008254 28 SAAAELKFKLEAMDY------IVSTFY---NE---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA-KDLPTIIT 94 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy------~V~ta~---~a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I-rdlPVIiL 94 (572)
.+.++++..|+..|| .+..+. +. .+.++.+.+ .++|.||+- +. .....+... .++|||++
T Consensus 24 ~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~--~~vDgII~~---~~--~~~~~~~~~~~~iPvV~~ 96 (302)
T 2qh8_A 24 ATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVG--ENPDVLVGI---AT--PTAQALVSATKTIPIVFT 96 (302)
T ss_dssp HHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHH--TCCSEEEEE---SH--HHHHHHHHHCSSSCEEEE
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHh--CCCCEEEEC---Ch--HHHHHHHhcCCCcCEEEE
Confidence 355677788888899 554343 22 345667777 689998873 11 223333333 48999998
Q ss_pred eC
Q 008254 95 SN 96 (572)
Q Consensus 95 S~ 96 (572)
..
T Consensus 97 ~~ 98 (302)
T 2qh8_A 97 AV 98 (302)
T ss_dssp EE
T ss_pred ec
Confidence 64
No 364
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=26.89 E-value=3.1e+02 Score=26.39 Aligned_cols=64 Identities=13% Similarity=0.147 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 27 SSAAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 27 ~~~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
..+...+...+++.||.+..+.. . .+.++.+.. ..+|-||+--.... . .+++.+. .+|||++..
T Consensus 78 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiIi~~~~~~-~---~~~~~l~~~~iPvV~~~~ 149 (339)
T 3h5o_A 78 LETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQ--HRPDGVLITGLSHA-E---PFERILSQHALPVVYMMD 149 (339)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHT--TCCSEEEEECSCCC-T---THHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHc--CCCCEEEEeCCCCC-H---HHHHHHhcCCCCEEEEee
Confidence 45777888888899998876542 2 345666666 67887776432222 2 3444443 799998854
No 365
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=26.79 E-value=3.1e+02 Score=23.62 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=41.1
Q ss_pred CeeEEEEeCCCCCCCChHHHHHHhc-CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCC--CCHHHHHH
Q 008254 63 NFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKP--LSEDKLRN 139 (572)
Q Consensus 63 ~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KP--vs~eeL~~ 139 (572)
..|++|+ . ..+..+++.+. .+|+|++-...+.....+.+. +.| .++++.+ ++.++|.+
T Consensus 86 ~ad~~I~-----~-~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~------------~~g-~g~~~~~~~~~~~~l~~ 146 (170)
T 2o6l_A 86 KTRAFIT-----H-GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMK------------ARG-AAVRVDFNTMSSTDLLN 146 (170)
T ss_dssp TEEEEEE-----C-CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHH------------TTT-SEEECCTTTCCHHHHHH
T ss_pred CcCEEEE-----c-CCccHHHHHHHcCCCEEeccchhhHHHHHHHHH------------HcC-CeEEeccccCCHHHHHH
Confidence 4677775 1 23455666665 899998876555444444444 144 4555554 48899999
Q ss_pred HHHHHHH
Q 008254 140 LWQHVVH 146 (572)
Q Consensus 140 ~~q~Vlr 146 (572)
+|..++.
T Consensus 147 ~i~~ll~ 153 (170)
T 2o6l_A 147 ALKRVIN 153 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8888874
No 366
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=26.72 E-value=1.8e+02 Score=29.56 Aligned_cols=105 Identities=10% Similarity=0.160 Sum_probs=52.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIIT 94 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~-~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiL 94 (572)
++||.||.--..........|.. .+++++ .+....+..+.+.+ .+++-.. .+--++++. .++-+|++
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~---~~g~~~~-------~~~~ell~~-~~vD~V~i 70 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGK---EYGIPVF-------ATLAEMMQH-VQMDAVYI 70 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHH---HHTCCEE-------SSHHHHHHH-SCCSEEEE
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHH---HcCCCeE-------CCHHHHHcC-CCCCEEEE
Confidence 46777777763333333333333 356665 33322232322222 1221111 122334433 13344444
Q ss_pred eCC--CChHHHHHHHHHHHhhhhccccccCCccEEEeCCC--CHHHHHHHHHHHH
Q 008254 95 SNI--HCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDKLRNLWQHVV 145 (572)
Q Consensus 95 S~~--~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~eeL~~~~q~Vl 145 (572)
+.. ...+.+.+|++ .|..=|+-||+ +.++...+++.+-
T Consensus 71 ~tp~~~H~~~~~~al~-------------aGk~Vl~EKP~a~~~~e~~~l~~~a~ 112 (387)
T 3moi_A 71 ASPHQFHCEHVVQASE-------------QGLHIIVEKPLTLSRDEADRMIEAVE 112 (387)
T ss_dssp CSCGGGHHHHHHHHHH-------------TTCEEEECSCCCSCHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHH-------------CCCceeeeCCccCCHHHHHHHHHHHH
Confidence 333 33466777888 99999999996 4677777555443
No 367
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=26.62 E-value=1.4e+02 Score=29.38 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=23.8
Q ss_pred CccEEEEEeCC---------HHHHHHHHHHHHhCCCEEEEEC
Q 008254 16 KGLRVLLLDQD---------SSAAAELKFKLEAMDYIVSTFY 48 (572)
Q Consensus 16 ~~lRVLVVDDD---------~~~~~~L~~lL~~~gy~V~ta~ 48 (572)
+.||||+|-+. ......|...|.+.|++|+.+.
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~ 42 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFT 42 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35799998865 1246668888888899888544
No 368
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=26.62 E-value=89 Score=34.97 Aligned_cols=73 Identities=14% Similarity=0.264 Sum_probs=47.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEe--CCCCCCCCh-------HHHHHHh
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVE--VTTSNTDGS-------FKFLETA 86 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvD--v~mPd~mdG-------~~lLe~I 86 (572)
.+++|+|||....+...|...|+..|+.+........ ... ..+|.||+- ...+. ..+ .++++.+
T Consensus 445 ~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~----~~~--~~~DgIIlsGGPg~p~-d~~~p~i~~~~~lI~~a 517 (645)
T 3r75_A 445 SGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA----VDL--ARYDVVVMGPGPGDPS-DAGDPRIARLYAWLRHL 517 (645)
T ss_dssp TTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC----CCG--GGCSEEEECCCSSCTT-CTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc----ccc--cCCCEEEECCCCCChh-hhhhhhHHHHHHHHHHH
Confidence 4679999999999999999999999997775532221 112 357888772 22233 233 2344443
Q ss_pred c--CCcEEEEe
Q 008254 87 K--DLPTIITS 95 (572)
Q Consensus 87 r--dlPVIiLS 95 (572)
. ++||+=+.
T Consensus 518 ~~~~iPiLGIC 528 (645)
T 3r75_A 518 IDEGKPFMAVC 528 (645)
T ss_dssp HHHTCCEEEET
T ss_pred HHCCCCEEEEC
Confidence 2 89988663
No 369
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=26.50 E-value=1.4e+02 Score=30.17 Aligned_cols=83 Identities=17% Similarity=0.217 Sum_probs=52.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEe
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS 95 (572)
+.|||||+.- -.+...+...|.+ .++|+.+.-..+.++.+.+ ....+-+|+ .|--.+.+.+++.-+|+.+
T Consensus 15 ~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~---~~~~~~~d~-----~d~~~l~~~~~~~DvVi~~ 84 (365)
T 3abi_A 15 RHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKE---FATPLKVDA-----SNFDKLVEVMKEFELVIGA 84 (365)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTT---TSEEEECCT-----TCHHHHHHHHTTCSEEEEC
T ss_pred CccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhc---cCCcEEEec-----CCHHHHHHHHhCCCEEEEe
Confidence 4579999988 7777778888865 5888877766677777765 344555565 2334455556655555544
Q ss_pred CCC--ChHHHHHHHH
Q 008254 96 NIH--CLSTMMKCIA 108 (572)
Q Consensus 96 ~~~--d~~~~~kai~ 108 (572)
... ....+..|++
T Consensus 85 ~p~~~~~~v~~~~~~ 99 (365)
T 3abi_A 85 LPGFLGFKSIKAAIK 99 (365)
T ss_dssp CCGGGHHHHHHHHHH
T ss_pred cCCcccchHHHHHHh
Confidence 332 3455666666
No 370
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=26.45 E-value=85 Score=31.23 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCCeeEEEEeC--CCCCCCCh--------------------HHHHHHhc----CCcEEEEeCCCC-----
Q 008254 51 NEALSAFSDKPENFHVAIVEV--TTSNTDGS--------------------FKFLETAK----DLPTIITSNIHC----- 99 (572)
Q Consensus 51 ~EAL~~L~e~~~~pDLVIvDv--~mPd~mdG--------------------~~lLe~Ir----dlPVIiLS~~~d----- 99 (572)
.+.++.|.+ ...|+|=+++ .-|- +|| +++++.+| ++|||+|+-+..
T Consensus 35 ~~~~~~l~~--~GaD~iElgiPfSDP~-aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g 111 (267)
T 3vnd_A 35 LKIIQTLVD--NGADALELGFPFSDPL-ADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANG 111 (267)
T ss_dssp HHHHHHHHH--TTCSSEEEECCCSCCT-TCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHC
T ss_pred HHHHHHHHH--cCCCEEEECCCCCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhh
Q ss_pred -hHHHHHHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHH
Q 008254 100 -LSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHV 144 (572)
Q Consensus 100 -~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~V 144 (572)
...+.+|.+ .|+++.++-.+..++....++.+
T Consensus 112 ~e~f~~~~~~-------------aGvdgvii~Dlp~ee~~~~~~~~ 144 (267)
T 3vnd_A 112 IDEFYTKAQA-------------AGVDSVLIADVPVEESAPFSKAA 144 (267)
T ss_dssp HHHHHHHHHH-------------HTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHHHH-------------cCCCEEEeCCCCHhhHHHHHHHH
No 371
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=26.43 E-value=1.3e+02 Score=22.00 Aligned_cols=46 Identities=30% Similarity=0.303 Sum_probs=34.5
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCCHHHHhhhCCCCCCHHHHHHhhhhh
Q 008254 332 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKY 381 (572)
Q Consensus 332 r~~Wt~eLh~~Fv~av~~lG~~~a~Pk~il~lM~v~glt~~~v~SHLQky 381 (572)
|-.||+|=...++++|++.|.. -=+.|-+.| +|=|-.+++.|-++|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTD--DWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSS--CHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCC--CHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 3479999999999999999942 235555554 578888887776554
No 372
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=26.39 E-value=1.5e+02 Score=26.89 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=41.0
Q ss_pred ccccCCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 9 SAWKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 9 s~~~~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
..++++ ++.+|.++...... ..|...+ .+..+..+.+..+++++|.. ++.|++|.|.
T Consensus 123 ~~~~dL-~g~~i~v~~g~~~~-~~l~~~~--~~~~~~~~~~~~~~~~~L~~--GrvDa~i~~~ 179 (249)
T 4f3p_A 123 KSIDDL-NGKVIAAKTGTATI-DWIKAHL--KPKEIRQFPNIDQAYLALEA--GRVDAAMHDT 179 (249)
T ss_dssp CSSGGG-TTSEEEEETTSHHH-HHHHHHC--CCSEEEEESSHHHHHHHHHT--TSSSEEEEEH
T ss_pred CChHHh-CCCEEEEeCCChHH-HHHHhcC--CCceEEEcCCHHHHHHHHHc--CCeeEEEeCc
Confidence 344444 46789888776542 3333322 25688899999999999999 8999999875
No 373
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=26.23 E-value=2.5e+02 Score=25.82 Aligned_cols=68 Identities=13% Similarity=0.234 Sum_probs=46.8
Q ss_pred ECCHHHHHHHhhcCCCCee-EEEEeCCCCCC--CChHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccc
Q 008254 47 FYNENEALSAFSDKPENFH-VAIVEVTTSNT--DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNF 120 (572)
Q Consensus 47 a~~a~EAL~~L~e~~~~pD-LVIvDv~mPd~--mdG~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~ 120 (572)
..+..+.++.+.+ ..+| +.+.|...... ...+++++.++ ++|||+.....+.+.+.+++.
T Consensus 32 ~~~~~~~a~~~~~--~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~------------ 97 (253)
T 1h5y_A 32 VGDPVEMAVRYEE--EGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFR------------ 97 (253)
T ss_dssp EECHHHHHHHHHH--TTCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH------------
T ss_pred cccHHHHHHHHHH--cCCCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH------------
Confidence 3466777777776 5677 55666543220 02356667775 799998888888888888888
Q ss_pred cCCccEEEe
Q 008254 121 QLGAVEFLR 129 (572)
Q Consensus 121 ~~GA~dYL~ 129 (572)
.||+.+.+
T Consensus 98 -~Gad~V~i 105 (253)
T 1h5y_A 98 -AGADKVSV 105 (253)
T ss_dssp -HTCSEEEE
T ss_pred -cCCCEEEE
Confidence 89888775
No 374
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=26.22 E-value=3.3e+02 Score=27.20 Aligned_cols=87 Identities=13% Similarity=0.014 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhCCCEE-EEECCHHHHHHHhhcCCCCeeEEEEeCCCCCC--CCh---HHHHHHhc-CCcEEEEeCCCCh
Q 008254 28 SAAAELKFKLEAMDYIV-STFYNENEALSAFSDKPENFHVAIVEVTTSNT--DGS---FKFLETAK-DLPTIITSNIHCL 100 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V-~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~--mdG---~~lLe~Ir-dlPVIiLS~~~d~ 100 (572)
..+..|..+-...|.++ +.+.+.+|+-.++.. ..++|=++-+--.+ .|- .+++..+. +..+|.-|+..+.
T Consensus 140 ~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~---~a~iIGINNRnL~tf~vdl~~t~~L~~~ip~~~~~VsESGI~t~ 216 (258)
T 4a29_A 140 RELESLLEYARSYGMEPLILINDENDLDIALRI---GARFIGIMSRDFETGEINKENQRKLISMIPSNVVKVAKLGISER 216 (258)
T ss_dssp HHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHT---TCSEEEECSBCTTTCCBCHHHHHHHHTTSCTTSEEEEEESSCCH
T ss_pred HHHHHHHHHHHHHhHHHHHhcchHHHHHHHhcC---CCcEEEEeCCCccccccCHHHHHHHHhhCCCCCEEEEcCCCCCH
Confidence 34555666666778754 589999998877776 45666544322110 121 22333333 6777888899999
Q ss_pred HHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 101 STMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 101 ~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
+.+.+... .|+++||+-
T Consensus 217 ~dv~~l~~-------------~G~~a~LVG 233 (258)
T 4a29_A 217 NEIEELRK-------------LGVNAFLIS 233 (258)
T ss_dssp HHHHHHHH-------------TTCCEEEEC
T ss_pred HHHHHHHH-------------CCCCEEEEC
Confidence 99999888 999999985
No 375
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=26.15 E-value=1.4e+02 Score=25.93 Aligned_cols=51 Identities=10% Similarity=0.196 Sum_probs=37.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy--~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
.+|..+|-++...+..+..++..+. .+. ...+..+.+..+. ..||+|++|.
T Consensus 55 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~fD~i~~~~ 108 (177)
T 2esr_A 55 SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT---GRFDLVFLDP 108 (177)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC---SCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc---CCCCEEEECC
Confidence 5899999999999988888887764 243 5567766555433 3599999874
No 376
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=26.11 E-value=2.2e+02 Score=29.67 Aligned_cols=109 Identities=12% Similarity=0.027 Sum_probs=65.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCE---EEEEC--CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCc
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYI---VSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP 90 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~---V~ta~--~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlP 90 (572)
..+++|+..+....+.|+.+++..|.. |.... +.++....+.. .|++|+=... + -|..+++.+. .+|
T Consensus 406 ~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~-~--~g~~~lEAma~G~P 478 (568)
T 2vsy_A 406 DSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRH----ADLFLDTHPY-N--AHTTASDALWTGCP 478 (568)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGG----CSEEECCSSS-C--CSHHHHHHHHTTCC
T ss_pred CcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhc----CCEEeeCCCC-C--CcHHHHHHHhCCCC
Confidence 467888884445667888888877643 55443 44566777766 6887754333 3 5788888875 899
Q ss_pred EEEEeCCCChHHHH-HHHHHHHhhhhccccccCCccEEEeCCCCHHHHHHHHHHHHH
Q 008254 91 TIITSNIHCLSTMM-KCIAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRNLWQHVVH 146 (572)
Q Consensus 91 VIiLS~~~d~~~~~-kai~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~~~q~Vlr 146 (572)
||.+.+..-...+- ..+. ..|..+++.. +.+++.+++..++.
T Consensus 479 vv~~~g~~~~s~~~~~~l~------------~~g~~e~v~~--~~~~la~~i~~l~~ 521 (568)
T 2vsy_A 479 VLTTPGETFAARVAGSLNH------------HLGLDEMNVA--DDAAFVAKAVALAS 521 (568)
T ss_dssp EEBCCCSSGGGSHHHHHHH------------HHTCGGGBCS--SHHHHHHHHHHHHH
T ss_pred EEeccCCCchHHHHHHHHH------------HCCChhhhcC--CHHHHHHHHHHHhc
Confidence 98753321111110 1111 0355554443 88888888877764
No 377
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=26.10 E-value=2e+02 Score=26.69 Aligned_cols=58 Identities=10% Similarity=0.161 Sum_probs=42.5
Q ss_pred cccCCCCccEEEEEeCCHHHHHHHHHHHHhC--CCEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 10 AWKDFPKGLRVLLLDQDSSAAAELKFKLEAM--DYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 10 ~~~~~p~~lRVLVVDDD~~~~~~L~~lL~~~--gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
.++++ ++.+|.++... .....+..++... +..+..+.+..+++.+|.. ++.|+++.+.
T Consensus 124 sl~dL-~g~~v~~~~g~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~--G~vDa~i~~~ 183 (287)
T 2vha_A 124 DFADL-KGKAVVVTSGT-TSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLES--GRAVAFMMDD 183 (287)
T ss_dssp SGGGG-TTCEEEEETTS-HHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHT--TSCSEEEEEH
T ss_pred CHHHc-CCCEEEEeCCC-cHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHc--CCeeEEEeCh
Confidence 34444 35688877544 4455666666653 5688899999999999999 8999999864
No 378
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=26.04 E-value=2.1e+02 Score=28.00 Aligned_cols=103 Identities=14% Similarity=0.126 Sum_probs=57.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEe
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS 95 (572)
++||.||.--..-...+..+.+..+++++ .+....+..+.+.+ .+.+-. .+--++++. .++-+|+++
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~---~~~~~~--------~~~~~~l~~-~~~D~V~i~ 70 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAG---AYGCEV--------RTIDAIEAA-ADIDAVVIC 70 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH---HTTCEE--------CCHHHHHHC-TTCCEEEEC
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHH---HhCCCc--------CCHHHHhcC-CCCCEEEEe
Confidence 47899998866555444444443477776 44544444444433 122211 123344432 134445444
Q ss_pred CC--CChHHHHHHHHHHHhhhhccccccCCccEEEeCCC--CHHHHHHHHHHH
Q 008254 96 NI--HCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDKLRNLWQHV 144 (572)
Q Consensus 96 ~~--~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~eeL~~~~q~V 144 (572)
.. ...+.+..|++ .|..=|+-||+ +.++....++.+
T Consensus 71 tp~~~h~~~~~~al~-------------~gk~v~~EKP~~~~~~~~~~l~~~a 110 (331)
T 4hkt_A 71 TPTDTHADLIERFAR-------------AGKAIFCEKPIDLDAERVRACLKVV 110 (331)
T ss_dssp SCGGGHHHHHHHHHH-------------TTCEEEECSCSCSSHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHH-------------cCCcEEEecCCCCCHHHHHHHHHHH
Confidence 43 33566677777 99999999995 667777655533
No 379
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=26.03 E-value=1.2e+02 Score=26.78 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=41.0
Q ss_pred cccccCCCCccEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 8 LSAWKDFPKGLRVLLLDQDSSAAAELKFKLEAMD--YIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 8 ~s~~~~~p~~lRVLVVDDD~~~~~~L~~lL~~~g--y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
+..++++ ++.+|.++..... ...|...+ ..+..+.+..+++++|.. +++|+++.|.
T Consensus 109 ~~~~~dL-~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~--g~vDa~~~~~ 166 (234)
T 3h7m_A 109 AAGLEDL-RGRKVALHRDGIM-----HEYLAERGYGKDLVLTPTPADALRLLAA--GGCDYAVVAM 166 (234)
T ss_dssp CSSGGGG-TTSCEEEETTSHH-----HHHHHTTTCGGGEEEESSHHHHHHHHHT--TSSSEEEEEH
T ss_pred CCCHHHh-CCCEEEEEeCchH-----HHHHHhcCCCceEEEeCCHHHHHHHHHc--CCceEEEecc
Confidence 3344554 5678988877542 34455543 478889999999999999 8999999874
No 380
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=25.91 E-value=31 Score=35.07 Aligned_cols=89 Identities=15% Similarity=0.139 Sum_probs=59.2
Q ss_pred ccccccccc-cCCCCccEEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEeCCCCC----
Q 008254 3 CTANDLSAW-KDFPKGLRVLLLDQDSSAAAELKFKLEAMDYI--VSTFYNENEALSAFSDKPENFHVAIVEVTTSN---- 75 (572)
Q Consensus 3 ~~an~~s~~-~~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~--V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd---- 75 (572)
|..|.++.. -......+|+.+|=|....+.++..+...|.. +....... ..-+..+|++|+-..++.
T Consensus 141 CG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~------~~p~~~~DvaL~lkti~~Le~q 214 (281)
T 3lcv_B 141 CGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLE------DRLDEPADVTLLLKTLPCLETQ 214 (281)
T ss_dssp CTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTT------SCCCSCCSEEEETTCHHHHHHH
T ss_pred cCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecc------cCCCCCcchHHHHHHHHHhhhh
Confidence 677777643 33445679999999999999999999887654 33322111 112257999999887763
Q ss_pred -CCChHHHHHHhcCCcEEEEeCCC
Q 008254 76 -TDGSFKFLETAKDLPTIITSNIH 98 (572)
Q Consensus 76 -~mdG~~lLe~IrdlPVIiLS~~~ 98 (572)
...|+++++.++ .+.|++|...
T Consensus 215 ~kg~g~~ll~aL~-~~~vvVSfp~ 237 (281)
T 3lcv_B 215 QRGSGWEVIDIVN-SPNIVVTFPT 237 (281)
T ss_dssp STTHHHHHHHHSS-CSEEEEEEEC
T ss_pred hhHHHHHHHHHhC-CCCEEEeccc
Confidence 024666666654 6777777654
No 381
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=25.80 E-value=1.1e+02 Score=32.14 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=50.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE---EE-EECCHHHHHH-HhhcCCCCeeEEEEeCCCCCCCChHHHHHHh----cC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYI---VS-TFYNENEALS-AFSDKPENFHVAIVEVTTSNTDGSFKFLETA----KD 88 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~---V~-ta~~a~EAL~-~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I----rd 88 (572)
-+|..||-++...+.++.-++..|.. +. ...|+.+.+. .+ . ..||+|++|- ++ ...++++.+ +.
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~-~--~~fD~V~lDP--~g--~~~~~l~~a~~~Lk~ 150 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW-G--FGFDYVDLDP--FG--TPVPFIESVALSMKR 150 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC-S--SCEEEEEECC--SS--CCHHHHHHHHHHEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh-C--CCCcEEEECC--Cc--CHHHHHHHHHHHhCC
Confidence 57999999999999999999988762 44 5667777665 44 2 4799999997 44 223455443 33
Q ss_pred CcEEEEeC
Q 008254 89 LPTIITSN 96 (572)
Q Consensus 89 lPVIiLS~ 96 (572)
--+|++|.
T Consensus 151 gGll~~t~ 158 (392)
T 3axs_A 151 GGILSLTA 158 (392)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEEe
Confidence 34666666
No 382
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=25.67 E-value=1.4e+02 Score=28.38 Aligned_cols=32 Identities=9% Similarity=0.071 Sum_probs=27.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY 48 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~ 48 (572)
+++|||..-.-.+-..|...|.+.||+|+.+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~ 33 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCG 33 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEc
Confidence 46899999999999999988888899988655
No 383
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=25.57 E-value=2e+02 Score=28.42 Aligned_cols=56 Identities=14% Similarity=0.197 Sum_probs=40.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh--CC----CEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEA--MD----YIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS 74 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~--~g----y~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mP 74 (572)
...+|..||-++...+..+..+.. .+ -.|. ...++.+.+... . ..||+||+|...+
T Consensus 100 ~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-~--~~fD~Ii~d~~~~ 162 (314)
T 1uir_A 100 TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT-E--ERYDVVIIDLTDP 162 (314)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC-C--CCEEEEEEECCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc-C--CCccEEEECCCCc
Confidence 356899999999999988887754 22 2333 667887766543 3 5799999997554
No 384
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=25.41 E-value=1.8e+02 Score=27.47 Aligned_cols=66 Identities=9% Similarity=0.130 Sum_probs=46.7
Q ss_pred CHHHHHHHhhcCCCCee-EEEEeCCCCCC--CChHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccC
Q 008254 49 NENEALSAFSDKPENFH-VAIVEVTTSNT--DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQL 122 (572)
Q Consensus 49 ~a~EAL~~L~e~~~~pD-LVIvDv~mPd~--mdG~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~ 122 (572)
+..+..+.+.+ ..+| |.+.|+.-... ..-++++++++ ++|||+--+..+.+.+.+++. .
T Consensus 36 ~~~~~a~~~~~--~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~-------------~ 100 (247)
T 3tdn_A 36 LLRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFL-------------R 100 (247)
T ss_dssp EHHHHHHHHHH--TTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHH-------------T
T ss_pred CHHHHHHHHHH--cCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-------------c
Confidence 55666666666 5566 44567643210 12378888886 799999888888899999988 9
Q ss_pred CccEEEe
Q 008254 123 GAVEFLR 129 (572)
Q Consensus 123 GA~dYL~ 129 (572)
||+..++
T Consensus 101 Gad~V~i 107 (247)
T 3tdn_A 101 GADKVSI 107 (247)
T ss_dssp TCSEECC
T ss_pred CCCeeeh
Confidence 9888765
No 385
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=25.38 E-value=37 Score=32.93 Aligned_cols=43 Identities=21% Similarity=0.451 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhhC-CCccCCCC--------------CCCCchhHHHHHHHHcCCCCC
Q 008254 520 EEVIDKVVKEAISK-PWLPLPLG--------------LKPPSADSVLAELSRQGISTI 562 (572)
Q Consensus 520 ~e~~d~~i~~~~~~-pwlplplg--------------lkpps~~~v~~el~~qgi~~~ 562 (572)
.+.|++....+=.. |+.|.=++ +..|+++.++.+|.++|+..|
T Consensus 25 ~~~~~~~~~~l~~~~~~~~V~~af~~~~i~~~l~~~~~~~P~i~~al~~l~~~G~~~i 82 (269)
T 2xvy_A 25 RPALDKMGDRVRAAHPDIPVRWAYTAKMIRAKLRAEGIAAPSPAEALAGMAEEGFTHV 82 (269)
T ss_dssp THHHHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHcCCCCCCHHHHHHHHHHCCCCEE
Confidence 34555544433322 77676666 899999999999999999864
No 386
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=25.25 E-value=2.4e+02 Score=27.07 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=20.5
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCEEEEEC
Q 008254 18 LRVLLLDQDSS----AAAELKFKLEAMDYIVSTFY 48 (572)
Q Consensus 18 lRVLVVDDD~~----~~~~L~~lL~~~gy~V~ta~ 48 (572)
||||++-.... ....|...|.+.|++|..++
T Consensus 7 mkIl~~~~~~gG~~~~~~~la~~L~~~G~~V~v~~ 41 (364)
T 1f0k_A 7 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLG 41 (364)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cEEEEEeCCCccchhHHHHHHHHHHHcCCEEEEEe
Confidence 78998865431 22356777777899887554
No 387
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=25.24 E-value=59 Score=31.90 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=41.0
Q ss_pred HHHHHHhhcCCCCeeEEEEeCCCCCC-CChHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEE
Q 008254 51 NEALSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEF 127 (572)
Q Consensus 51 ~EAL~~L~e~~~~pDLVIvDv~mPd~-mdG~~lLe~Ir--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dY 127 (572)
.++++.+.+ ...|+|.+-+...-. .+-+++++++| ++|+|+++.+. |.++.|++++
T Consensus 23 ~~~~~~l~~--~GaD~IelG~S~g~t~~~~~~~v~~ir~~~~Pivl~~y~~-------------------n~i~~gvDg~ 81 (234)
T 2f6u_A 23 DEIIKAVAD--SGTDAVMISGTQNVTYEKARTLIEKVSQYGLPIVVEPSDP-------------------SNVVYDVDYL 81 (234)
T ss_dssp HHHHHHHHT--TTCSEEEECCCTTCCHHHHHHHHHHHTTSCCCEEECCSSC-------------------CCCCCCSSEE
T ss_pred HHHHHHHHH--cCCCEEEECCCCCCCHHHHHHHHHHhcCCCCCEEEecCCc-------------------chhhcCCCEE
Confidence 445666666 578888887632110 12477788887 89999998863 1224899999
Q ss_pred EeCCC
Q 008254 128 LRKPL 132 (572)
Q Consensus 128 L~KPv 132 (572)
|+--+
T Consensus 82 iipdL 86 (234)
T 2f6u_A 82 FVPTV 86 (234)
T ss_dssp EEEEE
T ss_pred EEccc
Confidence 98644
No 388
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=25.21 E-value=1.3e+02 Score=27.91 Aligned_cols=63 Identities=11% Similarity=-0.009 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 29 AAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~~------a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
+...+...++..||.+..+.. ..++++.+.. ..+|-||+--.... -..++.++ .+|||++...
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~----~~~~~~~~~~~iPvV~~~~~ 87 (276)
T 2h0a_A 17 LVEGIEGVLLEQRYDLALFPILSLARLKRYLENTTLA--YLTDGLILASYDLT----ERFEEGRLPTERPVVLVDAQ 87 (276)
T ss_dssp HHHHHHHHHGGGTCEEEECCCCSCCCCC-----------CCCSEEEEESCCCC----------CCSCSSCEEEESSC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHh--CCCCEEEEecCCCC----HHHHHHHhhcCCCEEEEecc
Confidence 456667777778998876542 2356777766 67888876433222 14556664 6999988553
No 389
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=25.20 E-value=2.3e+02 Score=27.30 Aligned_cols=66 Identities=8% Similarity=-0.063 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 27 SSAAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 27 ~~~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
..+...+...+++.||.+..+.. . .+.++.+.. ..+|-||+--. + .+.-.+.+.+. .+|||++...
T Consensus 79 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~--~-~~~~~~~~~~~~~~iPvV~~~~~ 152 (338)
T 3dbi_A 79 SELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLD--LRCDAIMIYPR--F-LSVDEIDDIIDAHSQPIMVLNRR 152 (338)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHH--TTCSEEEECCS--S-SCHHHHHHHHHHCSSCEEEESSC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh--CCCCEEEEeCC--C-CChHHHHHHHHcCCCCEEEEcCC
Confidence 34667777888888998876542 2 235666767 67898887432 2 23334555554 6899988654
No 390
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=25.19 E-value=1.7e+02 Score=29.90 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=42.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---EEE-EECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDY---IVS-TFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy---~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
.+|.-||-++...+..+.-++..|. .+. ...+..+.+..+......||+||+|.
T Consensus 244 ~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dp 301 (396)
T 3c0k_A 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECC
Confidence 4899999999999999998887776 454 67788887765542125799999985
No 391
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=25.10 E-value=1.3e+02 Score=31.78 Aligned_cols=76 Identities=8% Similarity=0.018 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCCCChHHHHH
Q 008254 28 SAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIHCLSTMMK 105 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~~d~~~~~k 105 (572)
.....|....+..|..+.+.--..+++++|.+ ..+|++ =+.-.+ +.-+.||+.+. ..|||+=|+-...+.+..
T Consensus 101 e~~~~L~~~~~~~Gi~~~stpfD~~svd~l~~--~~vd~~--KIgS~~-~~N~pLL~~va~~gKPViLStGmaTl~Ei~~ 175 (385)
T 1vli_A 101 EWILPLLDYCREKQVIFLSTVCDEGSADLLQS--TSPSAF--KIASYE-INHLPLLKYVARLNRPMIFSTAGAEISDVHE 175 (385)
T ss_dssp GGHHHHHHHHHHTTCEEECBCCSHHHHHHHHT--TCCSCE--EECGGG-TTCHHHHHHHHTTCSCEEEECTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEccCCHHHHHHHHh--cCCCEE--EECccc-ccCHHHHHHHHhcCCeEEEECCCCCHHHHHH
Confidence 45577788888889888877777888898877 444443 333445 66799999985 899999999999999888
Q ss_pred HHH
Q 008254 106 CIA 108 (572)
Q Consensus 106 ai~ 108 (572)
|+.
T Consensus 176 Ave 178 (385)
T 1vli_A 176 AWR 178 (385)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
No 392
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=25.08 E-value=62 Score=31.85 Aligned_cols=63 Identities=11% Similarity=0.231 Sum_probs=39.6
Q ss_pred HHHHHHhhcCCCCeeEEEEeCCCCCC-CChHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEE
Q 008254 51 NEALSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEF 127 (572)
Q Consensus 51 ~EAL~~L~e~~~~pDLVIvDv~mPd~-mdG~~lLe~Ir--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dY 127 (572)
.++++.+.+ ...|+|.+-...--. .+.+++++++| ++|+|+++... +.++.|+++|
T Consensus 23 ~~~~~~l~~--~GaD~ielG~S~Gvt~~~~~~~v~~ir~~~~Pivlm~y~~-------------------n~i~~G~dg~ 81 (240)
T 1viz_A 23 DEQLEILCE--SGTDAVIIGGSDGVTEDNVLRMMSKVRRFLVPCVLEVSAI-------------------EAIVPGFDLY 81 (240)
T ss_dssp HHHHHHHHT--SCCSEEEECC----CHHHHHHHHHHHTTSSSCEEEECSCG-------------------GGCCSCCSEE
T ss_pred HHHHHHHHH--cCCCEEEECCCCCCCHHHHHHHHHHhhCcCCCEEEecCcc-------------------ccccCCCCEE
Confidence 344555555 567888776521100 12577888887 79999998863 1224899999
Q ss_pred EeCCCCH
Q 008254 128 LRKPLSE 134 (572)
Q Consensus 128 L~KPvs~ 134 (572)
|+--+..
T Consensus 82 iiPdLp~ 88 (240)
T 1viz_A 82 FIPSVLN 88 (240)
T ss_dssp EEEEETT
T ss_pred EEcccCc
Confidence 9864433
No 393
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=25.04 E-value=1.2e+02 Score=30.54 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=42.2
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCEEEEEC--------CHHHHHHHhhcCCCCeeEEEEeCCCCC--CCChHHHHH
Q 008254 18 LRVLLLDQDSS---AAAELKFKLEAMDYIVSTFY--------NENEALSAFSDKPENFHVAIVEVTTSN--TDGSFKFLE 84 (572)
Q Consensus 18 lRVLVVDDD~~---~~~~L~~lL~~~gy~V~ta~--------~a~EAL~~L~e~~~~pDLVIvDv~mPd--~mdG~~lLe 84 (572)
-|+|||-|... ..+.+...|+..|+.+..+. +.+++ +.+++ .+.|+||. +-+ .+|-.+++.
T Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~--~~~d~IIa---vGGGsv~D~aK~vA 108 (354)
T 3ce9_A 35 KRVSLYFGEGIYELFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFKIP--AEVDALIG---IGGGKAIDAVKYMA 108 (354)
T ss_dssp SEEEEEEETTHHHHHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTTSC--TTCCEEEE---EESHHHHHHHHHHH
T ss_pred CeEEEEECccHHHHHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHhhh--cCCCEEEE---ECChHHHHHHHHHH
Confidence 38998888754 34556677777787665433 33445 55666 67899884 111 011233333
Q ss_pred HhcCCcEEEEe
Q 008254 85 TAKDLPTIITS 95 (572)
Q Consensus 85 ~IrdlPVIiLS 95 (572)
..+.+|+|.+-
T Consensus 109 ~~~~~p~i~IP 119 (354)
T 3ce9_A 109 FLRKLPFISVP 119 (354)
T ss_dssp HHHTCCEEEEE
T ss_pred hhcCCCEEEec
Confidence 33588988763
No 394
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=24.99 E-value=1.7e+02 Score=28.60 Aligned_cols=65 Identities=12% Similarity=0.017 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCEEEEEC-----CHHHHHHHhhcCCCCeeEEEEeCCCCCCCChH-HHHHHhcCCcEEEEeCC
Q 008254 29 AAAELKFKLEAMDYIVSTFY-----NENEALSAFSDKPENFHVAIVEVTTSNTDGSF-KFLETAKDLPTIITSNI 97 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~-----~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~-~lLe~IrdlPVIiLS~~ 97 (572)
....+...++..||.+..+. +..++++.+.+ ..+|.||+-- ....+.+ ++++...++|+|++...
T Consensus 25 ~~~Gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~--~~~dgIi~~~--~~~~~~~~~~a~~~p~~p~v~id~~ 95 (318)
T 2fqx_A 25 VWEGISRFAQENNAKCKYVTASTDAEYVPSLSAFAD--ENMGLVVACG--SFLVEAVIETSARFPKQKFLVIDAV 95 (318)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSGGGHHHHHHHHHH--TTCSEEEEES--TTTHHHHHHHHHHCTTSCEEEESSC
T ss_pred HHHHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHH--cCCCEEEECC--hhHHHHHHHHHHHCCCCEEEEEcCc
Confidence 45667778888899877543 23456777777 6799988732 1101122 22222237899998764
No 395
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=24.97 E-value=1.2e+02 Score=31.82 Aligned_cols=74 Identities=14% Similarity=0.131 Sum_probs=53.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIIT 94 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiL 94 (572)
+.+|+||.-. .+-..+...|...|+.|+.+..-.+.++.++. ..+.++.-|.. -.++|+.+. ...+|++
T Consensus 4 ~~~viIiG~G-r~G~~va~~L~~~g~~vvvId~d~~~v~~~~~--~g~~vi~GDat------~~~~L~~agi~~A~~viv 74 (413)
T 3l9w_A 4 GMRVIIAGFG-RFGQITGRLLLSSGVKMVVLDHDPDHIETLRK--FGMKVFYGDAT------RMDLLESAGAAKAEVLIN 74 (413)
T ss_dssp CCSEEEECCS-HHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH--TTCCCEESCTT------CHHHHHHTTTTTCSEEEE
T ss_pred CCeEEEECCC-HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh--CCCeEEEcCCC------CHHHHHhcCCCccCEEEE
Confidence 4689999975 46677888888899999988877888888887 56777776653 345677663 5666666
Q ss_pred eCCCC
Q 008254 95 SNIHC 99 (572)
Q Consensus 95 S~~~d 99 (572)
+...+
T Consensus 75 ~~~~~ 79 (413)
T 3l9w_A 75 AIDDP 79 (413)
T ss_dssp CCSSH
T ss_pred CCCCh
Confidence 55444
No 396
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=24.90 E-value=97 Score=27.26 Aligned_cols=72 Identities=11% Similarity=0.124 Sum_probs=43.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEeC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS~ 96 (572)
++|||..-.-.+-..|...|.+.|++|..+....+.+..+.. ....++..|+. + --.+.+.+..+-+|+...
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~--~~~~~~~~D~~--~---~~~~~~~~~~~d~vi~~a 75 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGP--RPAHVVVGDVL--Q---AADVDKTVAGQDAVIVLL 75 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSC--CCSEEEESCTT--S---HHHHHHHHTTCSEEEECC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccC--CceEEEEecCC--C---HHHHHHHHcCCCEEEECc
Confidence 689999999999888888888889998865543332222112 34555665653 2 223334444555665543
No 397
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=24.89 E-value=2.3e+02 Score=27.24 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
.+...+...++..||.+..+.. . .+.++.+.. ..+|-||+--. + .+ -+.++.+. .+|||++...
T Consensus 80 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~--~-~~-~~~~~~l~~~~iPvV~~~~~ 151 (332)
T 2o20_A 80 AITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLS--KQVDGIVYMGS--S-LD-EKIRTSLKNSRTPVVLVGTI 151 (332)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECSS--C-CC-HHHHHHHHHHCCCEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHh--CCCCEEEEeCC--C-CC-HHHHHHHHhCCCCEEEEccc
Confidence 3556677777788998875432 2 245666666 67888776432 1 12 23455553 7999988653
No 398
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=24.87 E-value=1.3e+02 Score=31.80 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=41.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC------CCE---E-EEECCHHHHHHHhhcCCCCeeEEEEeCCCC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAM------DYI---V-STFYNENEALSAFSDKPENFHVAIVEVTTS 74 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~------gy~---V-~ta~~a~EAL~~L~e~~~~pDLVIvDv~mP 74 (572)
-+|-+||=|+.+.+..++.|... ..+ | +...|+.+.|+...+....||+||+|+.-+
T Consensus 229 ~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~ 295 (381)
T 3c6k_A 229 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAV 295 (381)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSS
T ss_pred ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCCC
Confidence 47999999999999988887432 112 3 367899998876543225799999998653
No 399
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=24.83 E-value=1.9e+02 Score=27.43 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhCCC---EEE--EEC---C---HHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh-cCCcEEEEe
Q 008254 28 SAAAELKFKLEAMDY---IVS--TFY---N---ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA-KDLPTIITS 95 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy---~V~--ta~---~---a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I-rdlPVIiLS 95 (572)
.+.++++..|.+.|| .+. .+. + ..+.++.+.+ .++|.||+- .. .....+... .++|||++.
T Consensus 18 ~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~~--~~vDgII~~---~~--~~~~~~~~~~~~iPvV~~~ 90 (295)
T 3lft_A 18 LIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVA--NGNDLVVGI---AT--PAAQGLASATKDLPVIMAA 90 (295)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHHTT--SSCSEEEEE---SH--HHHHHHHHHCSSSCEEEES
T ss_pred HHHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHHHh--cCCCEEEEC---Cc--HHHHHHHHcCCCCCEEEEe
Confidence 456678888888999 543 232 2 2345666777 789998873 12 233333333 489999986
Q ss_pred C
Q 008254 96 N 96 (572)
Q Consensus 96 ~ 96 (572)
.
T Consensus 91 ~ 91 (295)
T 3lft_A 91 I 91 (295)
T ss_dssp C
T ss_pred c
Confidence 4
No 400
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=24.83 E-value=2e+02 Score=26.29 Aligned_cols=65 Identities=11% Similarity=0.189 Sum_probs=45.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHhh-cCCCCeeEEEEeCCCCCCCChHHHHHHh
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFS-DKPENFHVAIVEVTTSNTDGSFKFLETA 86 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~-ta~~a~EAL~~L~-e~~~~pDLVIvDv~mPd~mdG~~lLe~I 86 (572)
+.+|..+|-++...+..+..+...|. .|. ...+..+.+..+. . ..||+|++|...++ -.++++.+
T Consensus 78 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--~~fD~I~~~~~~~~---~~~~l~~~ 146 (233)
T 2gpy_A 78 EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELY--PLFDVLFIDAAKGQ---YRRFFDMY 146 (233)
T ss_dssp TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTS--CCEEEEEEEGGGSC---HHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccC--CCccEEEECCCHHH---HHHHHHHH
Confidence 56899999999999999999988765 243 4556666555442 3 57999999876543 34455554
No 401
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=24.80 E-value=1.7e+02 Score=29.56 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=40.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CC---EEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAM--DY---IVS-TFYNENEALSAFSDKPENFHVAIVEVTTS 74 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~--gy---~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mP 74 (572)
...+|..||-++...+..+..+... ++ .|. ...++.+.+..+.. ..||+||+|...|
T Consensus 143 ~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~--~~fDlIi~d~~~p 205 (334)
T 1xj5_A 143 SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAE--GSYDAVIVDSSDP 205 (334)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCT--TCEEEEEECCCCT
T ss_pred CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccC--CCccEEEECCCCc
Confidence 3468999999999999888877642 22 333 56777776654444 5799999997544
No 402
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=24.78 E-value=1.2e+02 Score=27.97 Aligned_cols=71 Identities=8% Similarity=0.065 Sum_probs=45.9
Q ss_pred eCC-HHHHHHHHHHHHhCCCEEEEEC-----C----HHHHHHHhhcCCCCeeEEEEeCC-----CCCCCChHHHHHHh-c
Q 008254 24 DQD-SSAAAELKFKLEAMDYIVSTFY-----N----ENEALSAFSDKPENFHVAIVEVT-----TSNTDGSFKFLETA-K 87 (572)
Q Consensus 24 DDD-~~~~~~L~~lL~~~gy~V~ta~-----~----a~EAL~~L~e~~~~pDLVIvDv~-----mPd~mdG~~lLe~I-r 87 (572)
+++ ....+.+..+|++.|+.|..-. . .+.-++.+++ .|+||..+. -+|...++++--.. .
T Consensus 22 ~~e~~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~----aD~vVA~ldpf~g~~~D~GTafEiGyA~Al 97 (161)
T 2f62_A 22 PDMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKD----CDAVIADLSPFRGHEPDCGTAFEVGCAAAL 97 (161)
T ss_dssp TTTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHH----CSEEEEECCCCSSSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHh----CCEEEEEecCCCCCCCCCcHHHHHHHHHHC
Confidence 456 6888999999999999875311 1 2222455655 689988876 33311236655444 3
Q ss_pred CCcEEEEeCCC
Q 008254 88 DLPTIITSNIH 98 (572)
Q Consensus 88 dlPVIiLS~~~ 98 (572)
..|||++....
T Consensus 98 gKPVi~l~~d~ 108 (161)
T 2f62_A 98 NKMVLTFTSDR 108 (161)
T ss_dssp TCEEEEECSCC
T ss_pred CCEEEEEEcCc
Confidence 89999997653
No 403
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=24.78 E-value=1.9e+02 Score=28.20 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=31.8
Q ss_pred HHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeCC
Q 008254 80 FKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKP 131 (572)
Q Consensus 80 ~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KP 131 (572)
.+++++++ ++||++=.+..+.+.+.+++. .||+.+++=-
T Consensus 194 ~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~-------------agAD~vVVGS 235 (268)
T 1qop_A 194 HHLIEKLKEYHAAPALQGFGISSPEQVSAAVR-------------AGAAGAISGS 235 (268)
T ss_dssp HHHHHHHHHTTCCCEEEESSCCSHHHHHHHHH-------------TTCSEEEECH
T ss_pred HHHHHHHHhccCCcEEEECCCCCHHHHHHHHH-------------cCCCEEEECh
Confidence 57777776 789888777777899999898 9999998853
No 404
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=24.77 E-value=1.5e+02 Score=29.49 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=38.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh--CCC---EEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEA--MDY---IVS-TFYNENEALSAFSDKPENFHVAIVEVTTS 74 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~--~gy---~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mP 74 (572)
..+|..||-++...+..+..+.. .++ .|. ...++.+.+... . ..||+||+|...+
T Consensus 119 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~-~--~~fD~Ii~d~~~~ 179 (304)
T 2o07_A 119 VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN-Q--DAFDVIITDSSDP 179 (304)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC-S--SCEEEEEEECC--
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC-C--CCceEEEECCCCC
Confidence 46899999999999988887764 122 233 567777766532 2 5799999997544
No 405
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=24.73 E-value=2.6e+02 Score=25.20 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=24.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFY 48 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~ 48 (572)
|+|||..-.-.+-..|...|.+.|++|+.+.
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~ 31 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGA 31 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEE
Confidence 4788888888888888888888888877544
No 406
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=24.60 E-value=6.5e+02 Score=26.72 Aligned_cols=97 Identities=13% Similarity=0.099 Sum_probs=59.3
Q ss_pred ccEEEEEeCC----HHHHHHHHHHHHhC-C---CEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCC-----------C
Q 008254 17 GLRVLLLDQD----SSAAAELKFKLEAM-D---YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNT-----------D 77 (572)
Q Consensus 17 ~lRVLVVDDD----~~~~~~L~~lL~~~-g---y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~-----------m 77 (572)
+++++++|-+ ......+..+-+.. + ..+..+.+.++|..++.. ..|+|++-+. ++. .
T Consensus 254 gv~~l~Vd~~~g~~~~~~~~i~~lk~~~~~~~~Vi~G~V~t~~~a~~l~~a---Gad~I~Vg~~-~g~~~~~r~~~~~g~ 329 (503)
T 1me8_A 254 GADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADA---GADFIKIGIG-GGSICITREQKGIGR 329 (503)
T ss_dssp TCSEEEECCSCCCSHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHH---TCSEEEECSS-CSTTCCSTTTTCCCC
T ss_pred hccceEEecccCcccchhhHHHHHHHhCCCCceEeeccccCHHHHHHHHHh---CCCeEEeccc-CCcCcccccccCCCC
Confidence 4567777543 22333332222221 2 234478888888888776 5788887431 210 1
Q ss_pred ChHHHHHHh----c--------CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 78 GSFKFLETA----K--------DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 78 dG~~lLe~I----r--------dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
.-+.++..+ + ++|||.=-+..+...+.+|++ +||+...+-
T Consensus 330 p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAla-------------lGA~~V~iG 381 (503)
T 1me8_A 330 GQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALA-------------MGADFIMLG 381 (503)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHH-------------TTCSEEEES
T ss_pred chHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHH-------------cCCCEEEEC
Confidence 123333333 2 589988778889999999999 999988763
No 407
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=24.45 E-value=77 Score=29.55 Aligned_cols=64 Identities=11% Similarity=-0.015 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEECCH-----HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEeCCC
Q 008254 27 SSAAAELKFKLEAMDYIVSTFYNE-----NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNIH 98 (572)
Q Consensus 27 ~~~~~~L~~lL~~~gy~V~ta~~a-----~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS~~~ 98 (572)
..+...+...+++.||.+..+... .+.++.+.+ ..+|-||+... . ....++. ..+|||++....
T Consensus 21 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~--~---~~~~~~~-~~iPvV~~~~~~ 89 (280)
T 3gyb_A 21 IDLIQSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALS--MRPDGIIIAQD--I---PDFTVPD-SLPPFVIAGTRI 89 (280)
T ss_dssp HHHHHHHHHHHGGGTCEEEEECSSSSCSSSCHHHHHHT--TCCSEEEEESC--C------------CCCEEEESCCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHh--CCCCEEEecCC--C---ChhhHhh-cCCCEEEECCCC
Confidence 346777788888889988866543 346777777 68998883322 2 2234444 789999886644
No 408
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=24.36 E-value=3.7e+02 Score=27.02 Aligned_cols=77 Identities=16% Similarity=0.117 Sum_probs=50.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHhhcCC------------CCeeEEEEeCCCCCCCChHHHH
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDY-IVS-TFYNENEALSAFSDKP------------ENFHVAIVEVTTSNTDGSFKFL 83 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy-~V~-ta~~a~EAL~~L~e~~------------~~pDLVIvDv~mPd~mdG~~lL 83 (572)
-+|+-||-++...+..+.-++..|. .+. ...++.+.+..+.... ..||+||+|---.+ -.-+++
T Consensus 236 ~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g--~~~~~~ 313 (369)
T 3bt7_A 236 DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG--LDSETE 313 (369)
T ss_dssp SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTC--CCHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCccc--cHHHHH
Confidence 4899999999999999988887765 343 5667777776554311 26999999842222 123567
Q ss_pred HHhcCCcEEEEeC
Q 008254 84 ETAKDLPTIITSN 96 (572)
Q Consensus 84 e~IrdlPVIiLS~ 96 (572)
+.++....|++.+
T Consensus 314 ~~l~~~g~ivyvs 326 (369)
T 3bt7_A 314 KMVQAYPRILYIS 326 (369)
T ss_dssp HHHTTSSEEEEEE
T ss_pred HHHhCCCEEEEEE
Confidence 7776444444433
No 409
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=24.30 E-value=1.6e+02 Score=30.69 Aligned_cols=85 Identities=12% Similarity=0.080 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhCCCEEE--EE---CCHHHHHHHhhcCCCCeeEEEEeCCCCCC--------------------CChHHHH
Q 008254 29 AAAELKFKLEAMDYIVS--TF---YNENEALSAFSDKPENFHVAIVEVTTSNT--------------------DGSFKFL 83 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~--ta---~~a~EAL~~L~e~~~~pDLVIvDv~mPd~--------------------mdG~~lL 83 (572)
+.+.|+.+-+..+.-|. .+ .+.++|..+... .+|.|+++-+ .+. ......|
T Consensus 194 ~~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~a---Gad~I~V~g~-GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L 269 (365)
T 3sr7_A 194 WKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDL---GVKTVDISGR-GGTSFAYIENRRGGNRSYLNQWGQTTAQVL 269 (365)
T ss_dssp HHHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHH---TCCEEECCCB-C--------------CGGGTTCSCBHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHc---CCCEEEEeCC-CCcccchhhccccccccccccccccHHHHH
Confidence 44566666665554333 34 577777776665 6788877543 110 1112344
Q ss_pred HHhc----CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 84 ETAK----DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 84 e~Ir----dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
..++ ++|||.-.+..+...+.+++. +||+...+=
T Consensus 270 ~~v~~~~~~ipvia~GGI~~g~Dv~KaLa-------------lGAdaV~ig 307 (365)
T 3sr7_A 270 LNAQPLMDKVEILASGGIRHPLDIIKALV-------------LGAKAVGLS 307 (365)
T ss_dssp HHHGGGTTTSEEEECSSCCSHHHHHHHHH-------------HTCSEEEES
T ss_pred HHHHHhcCCCeEEEeCCCCCHHHHHHHHH-------------cCCCEEEEC
Confidence 4443 689998888899999999999 999988764
No 410
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=24.25 E-value=2.5e+02 Score=26.95 Aligned_cols=64 Identities=14% Similarity=0.071 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhCCCEEEEE---C----CHH---HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEe
Q 008254 28 SAAAELKFKLEAMDYIVSTF---Y----NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITS 95 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta---~----~a~---EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS 95 (572)
.+...+...++..||.+..+ . +.. +.++.+.. ..+|-||+ ...+. ...+.++.+. .+|+|++.
T Consensus 61 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi-~~~~~--~~~~~~~~~~~~~ip~V~~~ 135 (342)
T 1jx6_A 61 RNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALK--SKSDYLIF-TLDTT--RHRKFVEHVLDSTNTKLILQ 135 (342)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHH--TTCSEEEE-CCSSS--TTHHHHHHHHHHCSCEEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHh--cCCCEEEE-eCChH--hHHHHHHHHHHcCCCEEEEe
Confidence 35566777777889866533 2 333 45666666 57999998 43222 2235566664 78988774
Q ss_pred C
Q 008254 96 N 96 (572)
Q Consensus 96 ~ 96 (572)
.
T Consensus 136 ~ 136 (342)
T 1jx6_A 136 N 136 (342)
T ss_dssp T
T ss_pred c
Confidence 3
No 411
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=24.18 E-value=26 Score=22.50 Aligned_cols=7 Identities=57% Similarity=0.634 Sum_probs=5.2
Q ss_pred CCCCCCc
Q 008254 540 LGLKPPS 546 (572)
Q Consensus 540 lglkpps 546 (572)
|||||++
T Consensus 14 lGLkplp 20 (21)
T 3plv_C 14 LGLKLIP 20 (26)
T ss_dssp TTCCCCC
T ss_pred cCCCCCC
Confidence 6888865
No 412
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=24.14 E-value=1.6e+02 Score=27.90 Aligned_cols=65 Identities=14% Similarity=0.204 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 29 AAAELKFKLEAMDYIVSTFY---NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~---~a~---EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
+...++..++..||.+..+. +.+ +.++.+.. ..+|-||+-..... .-.+.++.+. .+|||++...
T Consensus 20 ~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~~~~~ 92 (306)
T 2vk2_A 20 ETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVA--QGVDAIFIAPVVAT--GWEPVLKEAKDAEIPVFLLDRS 92 (306)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH--HTCSEEEECCSSSS--SCHHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChh--hHHHHHHHHHHCCCCEEEecCC
Confidence 44566777778899887553 232 34555655 57888887432211 1134566554 7999988653
No 413
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=23.89 E-value=1.7e+02 Score=22.07 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=33.8
Q ss_pred CceecCHHHHHHHHHHHHHhCCCCCCCHHHHhhhCCCCCCHHHHHHhhhhh
Q 008254 331 MKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKY 381 (572)
Q Consensus 331 ~r~~Wt~eLh~~Fv~av~~lG~~~a~Pk~il~lM~v~glt~~~v~SHLQky 381 (572)
.|-.||+|=..+++++|.+.|..+ =+.|-+.| +|=|-.+++.+-++|
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~--W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQD--WKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTC--HHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCC--HHHHHHHc--cCCCHHHHHHHHHHH
Confidence 356899999999999999999422 24455554 577777777665544
No 414
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=23.88 E-value=70 Score=29.50 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=43.4
Q ss_pred cccCCCCccEEEEEeCCHHHHHHHHHHHHhCC----CEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 10 AWKDFPKGLRVLLLDQDSSAAAELKFKLEAMD----YIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 10 ~~~~~p~~lRVLVVDDD~~~~~~L~~lL~~~g----y~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
.++++ ++.+|.++.... ....+...+...| ..+..+.+..+++.+|.. ++.|+++.|.
T Consensus 131 ~~~dL-~g~~v~v~~g~~-~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~--G~vDa~~~~~ 192 (259)
T 4dz1_A 131 NLNEL-NKYSIGYPRGMA-YSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKN--GNLDLAFIEE 192 (259)
T ss_dssp SGGGG-GGSCEEEETTST-HHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHH--TSCSEEEEEH
T ss_pred CHHHh-CCCEEEEeCCcH-HHHHHHHhcccccccccceeEecCCHHHHHHHHHc--CCCCEEEecH
Confidence 33443 466888877654 4556667776655 477889999999999999 8999999885
No 415
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=23.81 E-value=1.8e+02 Score=29.05 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=24.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECC
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYN 49 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~ 49 (572)
+.+++|||+..... ...+...++..||+|..+..
T Consensus 9 ~~~~~ili~g~g~~-~~~~~~a~~~~G~~v~~~~~ 42 (391)
T 1kjq_A 9 PAATRVMLLGSGEL-GKEVAIECQRLGVEVIAVDR 42 (391)
T ss_dssp TTCCEEEEESCSHH-HHHHHHHHHTTTCEEEEEES
T ss_pred CCCCEEEEECCCHH-HHHHHHHHHHcCCEEEEEEC
Confidence 35679999988754 45566677788998875543
No 416
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=23.74 E-value=1.4e+02 Score=28.59 Aligned_cols=80 Identities=16% Similarity=0.030 Sum_probs=48.1
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCEEE---EE----CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh
Q 008254 18 LRVLLLDQDSS----AAAELKFKLEAMDYIVS---TF----YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (572)
Q Consensus 18 lRVLVVDDD~~----~~~~L~~lL~~~gy~V~---ta----~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I 86 (572)
-||.+|.++.. ..+.++..|++.|..+. .+ .+....+..+.. ..+|+|++.. .+ .....+++.+
T Consensus 136 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~--~~~dav~~~~--~~-~~a~~~~~~~ 210 (362)
T 3snr_A 136 KTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVA--ANPDAILVGA--SG-TAAALPQTTL 210 (362)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHH--HCCSEEEEEC--CH-HHHHHHHHHH
T ss_pred CEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHh--cCCCEEEEec--Cc-chHHHHHHHH
Confidence 46666644333 44566777778888654 22 245566776666 5789988743 23 3456666666
Q ss_pred c----CCcEEEEeCCCChHH
Q 008254 87 K----DLPTIITSNIHCLST 102 (572)
Q Consensus 87 r----dlPVIiLS~~~d~~~ 102 (572)
+ .+|+|.+.+..+...
T Consensus 211 ~~~g~~~p~i~~~g~~~~~~ 230 (362)
T 3snr_A 211 RERGYNGLIYQTHGAASMDF 230 (362)
T ss_dssp HHTTCCSEEEECGGGCSHHH
T ss_pred HHcCCCccEEeccCcCcHHH
Confidence 4 577765555555443
No 417
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=23.73 E-value=97 Score=30.74 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHhhhhccccccCCccEEEeCCC--CHHHHHHHHHHHHH
Q 008254 100 LSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDKLRNLWQHVVH 146 (572)
Q Consensus 100 ~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~eeL~~~~q~Vlr 146 (572)
.+.+.+|++ .|..=|+-||+ +.++....++.+-+
T Consensus 81 ~~~~~~al~-------------aGkhVl~EKPla~~~~ea~~l~~~a~~ 116 (337)
T 3ip3_A 81 GKILLEALE-------------RKIHAFVEKPIATTFEDLEKIRSVYQK 116 (337)
T ss_dssp HHHHHHHHH-------------TTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------------CCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 456777777 99999999998 44677775554433
No 418
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=23.65 E-value=1.3e+02 Score=28.23 Aligned_cols=64 Identities=13% Similarity=0.136 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS~~ 97 (572)
.+...+...++..||.+..+.. . .+.++.+.. ..+|-||+-....+ ..-++.+ ..+|||++...
T Consensus 24 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~-~~~~~~l---~~iPvV~~~~~ 93 (288)
T 2qu7_A 24 EVLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVS--QNVSAIILVPVKSK-FQMKREW---LKIPIMTLDRE 93 (288)
T ss_dssp HHHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHH--TTEEEEEECCSSSC-CCCCGGG---GGSCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--cCccEEEEecCCCC-hHHHHHh---cCCCEEEEecc
Confidence 3455666777778998775542 2 235666666 67998887543322 1222222 67899988653
No 419
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=23.61 E-value=1.2e+02 Score=32.53 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=43.7
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCC
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd 75 (572)
++..-+|+.+|-++...+.++.-++..|..|. ...++.+....+ . ..||+||+|.-..+
T Consensus 123 ~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~-~--~~FD~Il~D~PcSg 182 (464)
T 3m6w_A 123 MGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAF-G--TYFHRVLLDAPCSG 182 (464)
T ss_dssp TTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHH-C--SCEEEEEEECCCCC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhc-c--ccCCEEEECCCcCC
Confidence 44445899999999999999999998876543 455666654433 3 57999999975444
No 420
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=23.60 E-value=1.7e+02 Score=26.90 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=20.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHh
Q 008254 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAF 57 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L 57 (572)
+|+|+.- -.+...+...|...|+.|+.+..-.+.++.+
T Consensus 2 ~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l 39 (218)
T 3l4b_C 2 KVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEF 39 (218)
T ss_dssp CEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHH
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence 5666664 4455555555555666666554444444433
No 421
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=23.55 E-value=1.6e+02 Score=29.98 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=23.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECC
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYN 49 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~ 49 (572)
+.+++|||+.....- ..+...+++.||+|..+..
T Consensus 17 ~~~~~ili~g~g~~g-~~~~~a~~~~G~~v~~v~~ 50 (433)
T 2dwc_A 17 DSAQKILLLGSGELG-KEIAIEAQRLGVEVVAVDR 50 (433)
T ss_dssp TTCCEEEEESCSHHH-HHHHHHHHHTTCEEEEEES
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHCCCEEEEEEC
Confidence 345799999987544 4455666788998875543
No 422
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=23.53 E-value=1.8e+02 Score=28.84 Aligned_cols=130 Identities=10% Similarity=0.062 Sum_probs=69.1
Q ss_pred CCCccEEEEEeCCHHHH-HHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEE
Q 008254 14 FPKGLRVLLLDQDSSAA-AELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~-~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVI 92 (572)
+++++||.||.--..-. ..+..+....+++|+.+.+... ..+++-.. .+--++|+...++-+|
T Consensus 22 ~M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~---------~~~g~~~~-------~~~~~ll~~~~~vD~V 85 (330)
T 4ew6_A 22 SMSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHG---------TVEGVNSY-------TTIEAMLDAEPSIDAV 85 (330)
T ss_dssp CCCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSC---------CCTTSEEE-------SSHHHHHHHCTTCCEE
T ss_pred cCCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCCh---------hhcCCCcc-------CCHHHHHhCCCCCCEE
Confidence 34579999999877665 3444444334777764443321 11221111 1334455542344455
Q ss_pred EEeCC--CChHHHHHHHHHHHhhhhccccccCCccEEEeCCC--CHHHHHHHHHHHHHHHHhcCCCcccCCCChhHHHHH
Q 008254 93 ITSNI--HCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVV 168 (572)
Q Consensus 93 iLS~~--~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~eeL~~~~q~Vlrr~~~~~~~~~~~sLt~RE~eVL 168 (572)
+++.. ...+.+.+|++ .|..=|+-||+ +.++...+++.+-+..... -.....++.+.-+.+.
T Consensus 86 ~i~tp~~~H~~~~~~al~-------------aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~-~v~~~~r~~p~~~~~k 151 (330)
T 4ew6_A 86 SLCMPPQYRYEAAYKALV-------------AGKHVFLEKPPGATLSEVADLEALANKQGASL-FASWHSRYAPAVEAAK 151 (330)
T ss_dssp EECSCHHHHHHHHHHHHH-------------TTCEEEECSSSCSSHHHHHHHHHHHHHHTCCE-EECCGGGGSTTHHHHH
T ss_pred EEeCCcHHHHHHHHHHHH-------------cCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeE-EEEehhhccHHHHHHH
Confidence 55443 33456677777 99999999997 6677777655443321110 0011223444455555
Q ss_pred HHHHh
Q 008254 169 SMLHL 173 (572)
Q Consensus 169 ~ll~~ 173 (572)
+++..
T Consensus 152 ~~i~~ 156 (330)
T 4ew6_A 152 AFLAS 156 (330)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 55554
No 423
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=23.44 E-value=72 Score=29.42 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=32.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008254 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIv 69 (572)
+|+|||=-.-....+.+.|+..|+++....+.++. .. +|.||+
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l----~~----~D~lil 46 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQVV----LA----ADKLFL 46 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHH----HH----CSEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHH----hC----CCEEEE
Confidence 69999966555677888999999999888887653 22 466665
No 424
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=23.35 E-value=2.3e+02 Score=28.67 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=41.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
.+|..||-++...+..+.-++..+. .-....++.+.+..+......||+||+|.
T Consensus 232 ~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 232 REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 5799999999999999998887765 23467788888776542225799999985
No 425
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Probab=23.35 E-value=1.6e+02 Score=27.44 Aligned_cols=54 Identities=19% Similarity=0.128 Sum_probs=34.3
Q ss_pred CCccEEEEEeCCHH---HHHHHHHHHHhCCC-EEE--EECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 15 PKGLRVLLLDQDSS---AAAELKFKLEAMDY-IVS--TFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 15 p~~lRVLVVDDD~~---~~~~L~~lL~~~gy-~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
.++-+||||||=-. ....+...|++.|. .|. +.-...++++.+.. .. +++.+++
T Consensus 118 ~~gk~VllVDDvi~TG~Tl~~a~~~L~~~ga~~V~v~~~v~~~~~~~~l~~--~~-~~v~~~~ 177 (208)
T 1wd5_A 118 RKGRDVVLVDDGVATGASMEAALSVVFQEGPRRVVVAVPVASPEAVERLKA--RA-EVVALSV 177 (208)
T ss_dssp CTTSEEEEECSCBSSCHHHHHHHHHHHTTCCSEEEEEEEEBCHHHHHHHHT--TS-EEEEEEC
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHHHHcCCCEEEEEEEEcCHHHHHHhcc--cC-cEEEEec
Confidence 36789999999543 34445556666664 232 22234577777777 55 8888875
No 426
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=23.35 E-value=2.1e+02 Score=26.88 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=28.5
Q ss_pred ccccCCCCccEEEEEeCCH--HHHHHHHHHHHhCCCEEEEE
Q 008254 9 SAWKDFPKGLRVLLLDQDS--SAAAELKFKLEAMDYIVSTF 47 (572)
Q Consensus 9 s~~~~~p~~lRVLVVDDD~--~~~~~L~~lL~~~gy~V~ta 47 (572)
.+-.+-|..|+|.|--|+. .+.+.|...|+..||+|.-+
T Consensus 13 ~~~~~~~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~ 53 (166)
T 3s5p_A 13 EAQTQGPGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDL 53 (166)
T ss_dssp ------CTTCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEE
T ss_pred eecCCCCCceEEEEEECchHHHHHHHHHHHHHHCCCEEEEc
Confidence 3445668889999999987 67788999999999998744
No 427
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=23.28 E-value=4.4e+02 Score=25.62 Aligned_cols=103 Identities=12% Similarity=0.158 Sum_probs=56.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEe
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS 95 (572)
++||.||.--..-...+..+.+..+++++ .+....+..+.+.+. ....-+. .+--+++ -.++-+|+++
T Consensus 1 ~~~vgiiG~G~~g~~~~~~l~~~~~~~~~~v~d~~~~~~~~~~~~-~~~~~~~--------~~~~~~l--~~~~D~V~i~ 69 (325)
T 2ho3_A 1 MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASR-YQNIQLF--------DQLEVFF--KSSFDLVYIA 69 (325)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTSEEEEEEECSSHHHHHHHGGG-SSSCEEE--------SCHHHHH--TSSCSEEEEC
T ss_pred CeEEEEEeCCHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHH-cCCCeEe--------CCHHHHh--CCCCCEEEEe
Confidence 36888888765544444444433467765 444434444444331 1211111 1222333 1345566655
Q ss_pred CCCC--hHHHHHHHHHHHhhhhccccccCCccEEEeCCC--CHHHHHHHHHH
Q 008254 96 NIHC--LSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDKLRNLWQH 143 (572)
Q Consensus 96 ~~~d--~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~eeL~~~~q~ 143 (572)
.... .+.+.+|++ .|..=|+-||+ +.++...+++.
T Consensus 70 tp~~~h~~~~~~al~-------------~gk~V~~EKP~~~~~~~~~~l~~~ 108 (325)
T 2ho3_A 70 SPNSLHFAQAKAALS-------------AGKHVILEKPAVSQPQEWFDLIQT 108 (325)
T ss_dssp SCGGGHHHHHHHHHH-------------TTCEEEEESSCCSSHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH-------------cCCcEEEecCCcCCHHHHHHHHHH
Confidence 5433 466677777 99988999998 66776664443
No 428
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=23.28 E-value=2.5e+02 Score=27.49 Aligned_cols=105 Identities=10% Similarity=0.133 Sum_probs=57.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHH-HhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEE
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKL-EAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL-~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVI 92 (572)
++++||.||.--..-...+..+. ...+++++ .+....+.++.+.+. ...+-+.. +--++++. .++-+|
T Consensus 6 ~~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~-~g~~~~~~--------~~~~~l~~-~~~D~V 75 (346)
T 3cea_A 6 RKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNE-LGVETTYT--------NYKDMIDT-ENIDAI 75 (346)
T ss_dssp CCCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHT-TCCSEEES--------CHHHHHTT-SCCSEE
T ss_pred CCcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHH-hCCCcccC--------CHHHHhcC-CCCCEE
Confidence 35689999998655444444444 23477765 445444445444331 22222221 22223321 145555
Q ss_pred EEeCCC--ChHHHHHHHHHHHhhhhccccccCCccEEEeCCCC--HHHHHHHHH
Q 008254 93 ITSNIH--CLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPLS--EDKLRNLWQ 142 (572)
Q Consensus 93 iLS~~~--d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPvs--~eeL~~~~q 142 (572)
+++... ..+.+.+|++ .|..=++-||+. .++...+++
T Consensus 76 ~i~tp~~~h~~~~~~al~-------------~G~~v~~eKp~~~~~~~~~~l~~ 116 (346)
T 3cea_A 76 FIVAPTPFHPEMTIYAMN-------------AGLNVFCEKPLGLDFNEVDEMAK 116 (346)
T ss_dssp EECSCGGGHHHHHHHHHH-------------TTCEEEECSCCCSCHHHHHHHHH
T ss_pred EEeCChHhHHHHHHHHHH-------------CCCEEEEcCCCCCCHHHHHHHHH
Confidence 555443 3466777777 898888899964 666655443
No 429
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=23.22 E-value=1.4e+02 Score=27.28 Aligned_cols=58 Identities=9% Similarity=0.071 Sum_probs=40.7
Q ss_pred cccCCCCccEEEEEeCCHHHHHHHHHHH---HhC--CCEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 10 AWKDFPKGLRVLLLDQDSSAAAELKFKL---EAM--DYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 10 ~~~~~p~~lRVLVVDDD~~~~~~L~~lL---~~~--gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
.++++ ++.+|.++...... ..|.... ... +..+..+.+..+++++|.. +++|+++.|.
T Consensus 121 ~~~dL-~g~~i~v~~g~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~--GrvDa~i~~~ 183 (268)
T 3hv1_A 121 SVAGM-AGKTLGAQAGSSGY-DAFNASPKILKDVVANQKVVQYSTFTQALIDLNS--GRIDGLLIDR 183 (268)
T ss_dssp SSGGG-TTCCEEEETTCHHH-HHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHH--TSCSEEEEEH
T ss_pred CHHHh-CCCEEEEEeCCchH-HHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHc--CCCCEEEeCH
Confidence 34444 56789888877554 3333222 111 1578899999999999999 8999999875
No 430
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=23.16 E-value=3.1e+02 Score=22.44 Aligned_cols=74 Identities=14% Similarity=0.099 Sum_probs=45.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh--cCCcEEEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIIT 94 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I--rdlPVIiL 94 (572)
+.+|+|+.- -.+-..+...|...|++|+.+....+.++.+.. ....++..|.. + .+.++.+ ...-+|+.
T Consensus 6 ~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~--~~~~~~~~d~~-----~-~~~l~~~~~~~~d~vi~ 76 (144)
T 2hmt_A 6 NKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS--YATHAVIANAT-----E-ENELLSLGIRNFEYVIV 76 (144)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT--TCSEEEECCTT-----C-HHHHHTTTGGGCSEEEE
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--hCCEEEEeCCC-----C-HHHHHhcCCCCCCEEEE
Confidence 347999997 666777777888888888766655565665555 33444444431 2 3444443 35666666
Q ss_pred eCCCC
Q 008254 95 SNIHC 99 (572)
Q Consensus 95 S~~~d 99 (572)
+...+
T Consensus 77 ~~~~~ 81 (144)
T 2hmt_A 77 AIGAN 81 (144)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 65544
No 431
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=23.12 E-value=1.6e+02 Score=28.67 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=39.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh----C-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEA----M-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS 74 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~----~-gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mP 74 (572)
..+|.+||-++...+..+..+.. . +-+|. ...|+.+.+... . ..||+||+|...+
T Consensus 99 ~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-~--~~fD~Ii~d~~~~ 159 (275)
T 1iy9_A 99 VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS-E--NQYDVIMVDSTEP 159 (275)
T ss_dssp CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC-C--SCEEEEEESCSSC
T ss_pred CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC-C--CCeeEEEECCCCC
Confidence 46899999999999998887743 1 12333 566777665532 2 5799999998654
No 432
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=22.96 E-value=2.5e+02 Score=27.72 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=22.9
Q ss_pred CCeeEEEEeCCCCCCCChHHHH---------H-HhcCCcEEEEeC
Q 008254 62 ENFHVAIVEVTTSNTDGSFKFL---------E-TAKDLPTIITSN 96 (572)
Q Consensus 62 ~~pDLVIvDv~mPd~mdG~~lL---------e-~IrdlPVIiLS~ 96 (572)
..|||||+-++.-. .-|.+++ + .+..+|-|.+|-
T Consensus 85 ~~PDLVvSGIN~G~-Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 128 (247)
T 1j9j_A 85 KRVDLIVSGVNRGP-NMGMDILHSGTVSGAMEGAMMNIPSIAISS 128 (247)
T ss_dssp TCCSEEEEEEEESC-CCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCEEEECCccCC-CCCcCeecchhHHHHHHHHhcCCCeEEEec
Confidence 57999999998765 4453322 1 123788888876
No 433
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=22.95 E-value=1.7e+02 Score=28.25 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 28 SAAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~---a---~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
.+...+...++..||.+..+.. . .+.++.+.. ..+|-||+--. + .+. +.++.+. .+|||++...
T Consensus 77 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~--~-~~~-~~~~~l~~~~iPvV~~~~~ 148 (332)
T 2hsg_A 77 ELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLG--KQVDGIIFMSG--N-VTE-EHVEELKKSPVPVVLAASI 148 (332)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSC--CSSCCEEECCS--S-CCH-HHHHHHTTSSSCEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHh--CCCcEEEEecC--C-CCH-HHHHHHHhCCCCEEEEccc
Confidence 4556677777788998875532 1 235666666 67887776321 2 222 5566664 7999988653
No 434
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=22.89 E-value=56 Score=31.09 Aligned_cols=60 Identities=8% Similarity=0.141 Sum_probs=44.7
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHhhcC--CCCeeEEEEeCC
Q 008254 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDK--PENFHVAIVEVT 72 (572)
Q Consensus 13 ~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~-ta~~a~EAL~~L~e~--~~~pDLVIvDv~ 72 (572)
.++.+.+|..||-++...+..+..++..|. .|. ...++.+.+..+... ...||+|++|..
T Consensus 81 ~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~ 145 (242)
T 3r3h_A 81 ALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDAD 145 (242)
T ss_dssp TSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESC
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCC
Confidence 345567999999999888888888887765 344 677888887766210 157999999975
No 435
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=22.88 E-value=1.7e+02 Score=24.82 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=38.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
.+|..||-++...+..+..+...+..+. ...+..+.+..+......||+|+++.
T Consensus 64 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 64 WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 3599999999999999888877654443 45667666655443114799999984
No 436
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=22.87 E-value=3.4e+02 Score=22.80 Aligned_cols=81 Identities=12% Similarity=0.061 Sum_probs=50.2
Q ss_pred ccEEEEEeCCHH-----HHHHHHHHHHhCCCE-E-EEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCC
Q 008254 17 GLRVLLLDQDSS-----AAAELKFKLEAMDYI-V-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDL 89 (572)
Q Consensus 17 ~lRVLVVDDD~~-----~~~~L~~lL~~~gy~-V-~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Irdl 89 (572)
+++||+|-+.-. ....|++.+...|+. + +.+.+..++-..+. .+|+||+-..+.. .- + .....
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~~~~~~----~~DlIi~t~~l~~-~~--~---~~~~~ 87 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEAKGLAS----NYDIVVASNHLIH-EL--D---GRTNG 87 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHHHHHGG----GCSEEEEETTTGG-GT--T---TSCSS
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHHhhccC----CCcEEEECCchHH-Hh--C---cCCCc
Confidence 467887766543 233566777777876 4 45666666655443 4899999877765 21 1 11246
Q ss_pred cEEEEeCCCChHHHHHHH
Q 008254 90 PTIITSNIHCLSTMMKCI 107 (572)
Q Consensus 90 PVIiLS~~~d~~~~~kai 107 (572)
++|.+...-+.+.+.+.+
T Consensus 88 ~vi~i~~~l~~~ei~~~i 105 (110)
T 3czc_A 88 KLIGLDNLMDDNEIKTKL 105 (110)
T ss_dssp EEEEESSTTCHHHHHHHH
T ss_pred eEEEeeccCCHHHHHHHH
Confidence 788888876666555443
No 437
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=22.86 E-value=59 Score=31.41 Aligned_cols=70 Identities=14% Similarity=0.120 Sum_probs=41.9
Q ss_pred HHHhhcCCCCeeEEEEeCCCCCC-CC--------------------hHHHHHHhc---CCcEEEEeCCCChH---HHHHH
Q 008254 54 LSAFSDKPENFHVAIVEVTTSNT-DG--------------------SFKFLETAK---DLPTIITSNIHCLS---TMMKC 106 (572)
Q Consensus 54 L~~L~e~~~~pDLVIvDv~mPd~-md--------------------G~~lLe~Ir---dlPVIiLS~~~d~~---~~~ka 106 (572)
++.+.+ ...|+|-+++-.++. +| ++++++.++ ++|+++++-. +.. .+..+
T Consensus 38 ~~~l~~--~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~~~-~~~~~~~~~~a 114 (262)
T 1rd5_A 38 LRLLDG--CGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYY-KPIMFRSLAKM 114 (262)
T ss_dssp HHHHHH--TTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCS-HHHHSCCTHHH
T ss_pred HHHHHH--cCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecC-cHHHHHHHHHH
Confidence 444445 568888887644420 23 456677776 7899988522 211 11225
Q ss_pred HHHHHhhhhccccccCCccEEEeCCCCHHHHHH
Q 008254 107 IAIMVMNQLFDNNFQLGAVEFLRKPLSEDKLRN 139 (572)
Q Consensus 107 i~~~~~~~~~~~~~~~GA~dYL~KPvs~eeL~~ 139 (572)
.+ .||+++++-....+++..
T Consensus 115 ~~-------------aGadgv~v~d~~~~~~~~ 134 (262)
T 1rd5_A 115 KE-------------AGVHGLIVPDLPYVAAHS 134 (262)
T ss_dssp HH-------------TTCCEEECTTCBTTTHHH
T ss_pred HH-------------cCCCEEEEcCCChhhHHH
Confidence 55 999999986555555444
No 438
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=22.80 E-value=1.9e+02 Score=27.29 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=41.6
Q ss_pred cccccCCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 8 LSAWKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 8 ~s~~~~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
+..++++ ++.+|.+..... ....|...+ .+..+..+.+..+++.+|.. +++|.++++.
T Consensus 156 i~sl~dL-~gk~v~~~~g~~-~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~--G~vDa~~~~~ 213 (291)
T 2yjp_A 156 ITDMAQL-KDQTLLVNKGTT-ADAFFTKSH--PEVKLLKFDQNTETFDALKD--GRGVALAHDN 213 (291)
T ss_dssp CCSGGGG-TTSEEEEETTSH-HHHHHHHHC--TTSEEEEESSHHHHHHHHHT--TSSSEEEEEH
T ss_pred CCCHHHh-CCCEEEEecCCc-HHHHHHHhC--CCceEEEeCCHHHHHHHHHc--CCccEEEecH
Confidence 3445555 467888775544 334444443 25788899999999999999 8999999874
No 439
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=22.73 E-value=5.7e+02 Score=25.32 Aligned_cols=94 Identities=10% Similarity=0.104 Sum_probs=56.2
Q ss_pred HHHHHHhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-----CCcEEEEeCCCChHHHHH
Q 008254 33 LKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTIITSNIHCLSTMMK 105 (572)
Q Consensus 33 L~~lL~~~gy~V~--ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-----dlPVIiLS~~~d~~~~~k 105 (572)
|+..|+.-...+. .-.+..+.++.+.. ..+|.|++|+.-.. .+--.+...++ ..++++=+...+...+..
T Consensus 30 ~k~~l~~G~~~~gl~~~~~~p~~~e~a~~--~GaD~v~lDlEh~~-~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~~ 106 (287)
T 2v5j_A 30 FKAALKAGRPQIGLWLGLSSSYSAELLAG--AGFDWLLIDGEHAP-NNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQ 106 (287)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHHHT--SCCSEEEEESSSSS-CCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHH
T ss_pred HHHHHHCCCcEEEEEEECCCHHHHHHHHh--CCCCEEEEeCCCcc-chHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHH
Confidence 5556654322343 33344555666666 67999999985443 34333333332 466777667677777777
Q ss_pred HHHHHHhhhhccccccCCccEEEe-CCCCHHHHHHHHH
Q 008254 106 CIAIMVMNQLFDNNFQLGAVEFLR-KPLSEDKLRNLWQ 142 (572)
Q Consensus 106 ai~~~~~~~~~~~~~~~GA~dYL~-KPvs~eeL~~~~q 142 (572)
++. .|++..++ |=-+.+++..+++
T Consensus 107 ~ld-------------~ga~~ImlP~V~saeea~~~~~ 131 (287)
T 2v5j_A 107 LLD-------------VGTQTLLVPMVQNADEAREAVR 131 (287)
T ss_dssp HHH-------------TTCCEEEESCCCSHHHHHHHHH
T ss_pred HHh-------------CCCCEEEeCCCCCHHHHHHHHH
Confidence 777 89987655 3335677665433
No 440
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=22.67 E-value=3.3e+02 Score=24.47 Aligned_cols=73 Identities=10% Similarity=0.108 Sum_probs=47.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEE
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAM--DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~--gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIi 93 (572)
++++|||..-.-.+-..|...|.+. |+.|+.+....+.+..+. ....++..|+. + --.+.+.+..+-+|+
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~---~~~~~~~~D~~--d---~~~~~~~~~~~d~vi 74 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG---GEADVFIGDIT--D---ADSINPAFQGIDALV 74 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTT---CCTTEEECCTT--S---HHHHHHHHTTCSEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcC---CCeeEEEecCC--C---HHHHHHHHcCCCEEE
Confidence 4578999999988888888888877 899886554444444442 35667777763 2 223333344555665
Q ss_pred EeC
Q 008254 94 TSN 96 (572)
Q Consensus 94 LS~ 96 (572)
..+
T Consensus 75 ~~a 77 (253)
T 1xq6_A 75 ILT 77 (253)
T ss_dssp ECC
T ss_pred Eec
Confidence 543
No 441
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=22.58 E-value=2.3e+02 Score=29.41 Aligned_cols=76 Identities=11% Similarity=0.173 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCCCChHHHHH
Q 008254 28 SAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIHCLSTMMK 105 (572)
Q Consensus 28 ~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~~d~~~~~k 105 (572)
.....|....+..|..+.+.--..+++++|.+ ..+|++ =+.-.+ +.-+.||+.+. ..|||+=|+-...+.+..
T Consensus 78 e~~~~L~~~~~~~Gi~~~st~fD~~svd~l~~--~~v~~~--KI~S~~-~~N~pLL~~va~~gKPviLstGmstl~Ei~~ 152 (350)
T 3g8r_A 78 EQMQKLVAEMKANGFKAICTPFDEESVDLIEA--HGIEII--KIASCS-FTDWPLLERIARSDKPVVASTAGARREDIDK 152 (350)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSHHHHHHHHH--TTCCEE--EECSSS-TTCHHHHHHHHTSCSCEEEECTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEeccCCHHHHHHHHH--cCCCEE--EECccc-ccCHHHHHHHHhhCCcEEEECCCCCHHHHHH
Confidence 34566777777889888866666778888887 444544 445556 77899999995 899999999888888777
Q ss_pred HHH
Q 008254 106 CIA 108 (572)
Q Consensus 106 ai~ 108 (572)
|+.
T Consensus 153 Ave 155 (350)
T 3g8r_A 153 VVS 155 (350)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 442
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=22.52 E-value=1e+02 Score=26.72 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=31.6
Q ss_pred ccEEEEEeCCHHH----------HHHHHHHHHhCCCEEEEE------CCHHHHHHHhhcC--CCCeeEEEEeCCC
Q 008254 17 GLRVLLLDQDSSA----------AAELKFKLEAMDYIVSTF------YNENEALSAFSDK--PENFHVAIVEVTT 73 (572)
Q Consensus 17 ~lRVLVVDDD~~~----------~~~L~~lL~~~gy~V~ta------~~a~EAL~~L~e~--~~~pDLVIvDv~m 73 (572)
+.+|+++.|.-.. ...|...|...+..+... .+..+.+..+... ...||+||+.+..
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~~~pd~vvi~~G~ 76 (185)
T 3hp4_A 2 DNTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASISGETSGGALRRLDALLEQYEPTHVLIELGA 76 (185)
T ss_dssp CEEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCTTCCHHHHHHHHHHHHHHHCCSEEEEECCH
T ss_pred CCeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcCCccHHHHHHHHHHHHhhcCCCEEEEEeec
Confidence 4578888886543 566777777654433221 1344444433220 0267888886643
No 443
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=22.42 E-value=57 Score=31.19 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=36.4
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCC
Q 008254 18 LRVLLLDQDSS--------AAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVT 72 (572)
Q Consensus 18 lRVLVVDDD~~--------~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~ 72 (572)
++|+|+.+... ....+...|++.||+|..+......+..+.. ..+|+|+.-++
T Consensus 3 ~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~~~--~~~d~v~~~~~ 63 (306)
T 1iow_A 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKS--MGFQKVFIALH 63 (306)
T ss_dssp CEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTT--TTEEEEEECCC
T ss_pred cEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHhhc--cCCCEEEEcCC
Confidence 68999987542 3456778888899999877654332334444 57999987664
No 444
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=22.31 E-value=2.8e+02 Score=27.85 Aligned_cols=91 Identities=11% Similarity=0.032 Sum_probs=59.0
Q ss_pred EEEEeCCHHHHHH----HHHHHHhCCC---EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc-CCcE
Q 008254 20 VLLLDQDSSAAAE----LKFKLEAMDY---IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPT 91 (572)
Q Consensus 20 VLVVDDD~~~~~~----L~~lL~~~gy---~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir-dlPV 91 (572)
+||.||+..+... ++..-+..+. ..+++.+.+++.+++.. ..|+|.+|-.-|. .--+..+.++ .+|+
T Consensus 169 ~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~a---GaD~I~ld~~~~~--~~k~av~~v~~~ipi 243 (286)
T 1x1o_A 169 ILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEA---GADLILLDNFPLE--ALREAVRRVGGRVPL 243 (286)
T ss_dssp EEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHH---TCSEEEEESCCHH--HHHHHHHHHTTSSCE
T ss_pred eEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhCCCCeE
Confidence 7888887765433 3333333433 33478899999998876 5799999974443 2233444554 6776
Q ss_pred EEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 92 IITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 92 IiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
+. |+.-+.+.+..... .|++.+-+
T Consensus 244 ~A-sGGIt~eni~~~a~-------------tGvD~IsV 267 (286)
T 1x1o_A 244 EA-SGNMTLERAKAAAE-------------AGVDYVSV 267 (286)
T ss_dssp EE-ESSCCHHHHHHHHH-------------HTCSEEEC
T ss_pred EE-EcCCCHHHHHHHHH-------------cCCCEEEE
Confidence 65 66667888888777 88876654
No 445
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=22.27 E-value=4.2e+02 Score=27.17 Aligned_cols=85 Identities=9% Similarity=0.049 Sum_probs=53.1
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEE
Q 008254 19 RVLLLDQDSSAAAELKFKLE----AMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (572)
Q Consensus 19 RVLVVDDD~~~~~~L~~lL~----~~gy--~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVI 92 (572)
-|||-|++-.....+...++ ..++ ..+.+.+.+++.+++.. ..|+|.+|-.-++ +--+..+.++.-..|
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~a---GaD~I~LDn~~~~--~l~~av~~l~~~v~i 278 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAISA---GADIIMLDNFSLE--MMREAVKINAGRAAL 278 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEEESCCHH--HHHHHHHHHTTSSEE
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhCCCCeE
Confidence 36777766444333333333 3333 45688999999988876 5799999963222 222233334334567
Q ss_pred EEeCCCChHHHHHHHH
Q 008254 93 ITSNIHCLSTMMKCIA 108 (572)
Q Consensus 93 iLS~~~d~~~~~kai~ 108 (572)
..|+.-+.+.+.+...
T Consensus 279 eaSGGIt~~~I~~~a~ 294 (320)
T 3paj_A 279 ENSGNITLDNLKECAE 294 (320)
T ss_dssp EEESSCCHHHHHHHHT
T ss_pred EEECCCCHHHHHHHHH
Confidence 7888888888877766
No 446
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=22.22 E-value=4.5e+02 Score=28.15 Aligned_cols=85 Identities=15% Similarity=0.080 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCC--CC---hHHHHHHhc-CCcEEEEeCCCChH
Q 008254 29 AAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT--DG---SFKFLETAK-DLPTIITSNIHCLS 101 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~--md---G~~lLe~Ir-dlPVIiLS~~~d~~ 101 (572)
.+..|....+..|..+. .+.+.+|+..++.- .+|+|=++.+--.. .| -.+++..+. ++++|.-|+....+
T Consensus 145 ~l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~l---ga~iIGinnr~L~t~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~e 221 (452)
T 1pii_A 145 QYRQLAAVAHSLEMGVLTEVSNEEEQERAIAL---GAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGINTYA 221 (452)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSHHHHHHHHHT---TCSEEEEESEETTTTEECTHHHHHHHHHHCTTSEEEEESCCCCHH
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHC---CCCEEEEeCCCCCCCCCCHHHHHHHHHhCCCCCeEEEECCCCCHH
Confidence 34455555566788665 88999999888776 57877765432110 11 123344443 67889899999999
Q ss_pred HHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 102 TMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 102 ~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
.+.++.. + |+++|+-
T Consensus 222 dv~~~~~-------------~-a~avLVG 236 (452)
T 1pii_A 222 QVRELSH-------------F-ANGFLIG 236 (452)
T ss_dssp HHHHHTT-------------T-CSEEEEC
T ss_pred HHHHHHH-------------h-CCEEEEc
Confidence 9999888 8 8888764
No 447
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=22.20 E-value=1.4e+02 Score=30.36 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=46.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECC--HH----------HHHHHhhcCCCCeeEEEEeCCCCCCCChH
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYN--EN----------EALSAFSDKPENFHVAIVEVTTSNTDGSF 80 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~-ta~~--a~----------EAL~~L~e~~~~pDLVIvDv~mPd~mdG~ 80 (572)
|++.|||+++.........|+.++.. +++|. .++. -. ...+...+ ....++ . ..+ ...-
T Consensus 4 m~~~mrivf~Gt~~fa~~~L~~L~~~-~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~--~gIpv~--~--~~~-~~~~ 75 (318)
T 3q0i_A 4 MSQSLRIVFAGTPDFAARHLAALLSS-EHEIIAVYTQPERPAGRGKKLTASPVKTLALE--HNVPVY--Q--PEN-FKSD 75 (318)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHTS-SSEEEEEECCCC---------CCCHHHHHHHH--TTCCEE--C--CSC-SCSH
T ss_pred cccCCEEEEEecCHHHHHHHHHHHHC-CCcEEEEEcCCCCcccccccCCCCHHHHHHHH--cCCCEE--c--cCc-CCCH
Confidence 34568999999998888888888864 68766 4442 11 22344444 344432 2 122 3344
Q ss_pred HHHHHhc--CCcEEEEeCCCC
Q 008254 81 KFLETAK--DLPTIITSNIHC 99 (572)
Q Consensus 81 ~lLe~Ir--dlPVIiLS~~~d 99 (572)
++++.++ ..-+|++.++..
T Consensus 76 ~~~~~l~~~~~Dliv~~~y~~ 96 (318)
T 3q0i_A 76 ESKQQLAALNADLMVVVAYGL 96 (318)
T ss_dssp HHHHHHHTTCCSEEEESSCCS
T ss_pred HHHHHHHhcCCCEEEEeCccc
Confidence 6777775 456788877754
No 448
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=22.17 E-value=64 Score=27.65 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhCCCccCCCCCCCCchhHHHHHHHHcCCCCC
Q 008254 521 EVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTI 562 (572)
Q Consensus 521 e~~d~~i~~~~~~pwlplplglkpps~~~v~~el~~qgi~~~ 562 (572)
+.+.+.+++.. .+-..-=+.+-.|+++.++.+|.++|+.+|
T Consensus 25 ~~l~~~l~~~~-~~V~~a~le~~~P~l~~~l~~l~~~G~~~v 65 (126)
T 3lyh_A 25 EKLAEPTVESI-ENAAIAYMELAEPSLDTIVNRAKGQGVEQF 65 (126)
T ss_dssp HHHHHHHHHHS-TTCEEEESSSSSSBHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHhhc-CCEEEEEEeCCCCCHHHHHHHHHHcCCCEE
Confidence 34445566555 333333367789999999999999998764
No 449
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=22.11 E-value=3.5e+02 Score=25.80 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=38.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-----CHHHHHHHhhcCCCCeeEEEEeCC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-----NENEALSAFSDKPENFHVAIVEVT 72 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~-----~a~EAL~~L~e~~~~pDLVIvDv~ 72 (572)
++|||..-.-.+-..|...|.+.||+|+.+. ...+.+..+... ..+.++..|+.
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~-~~~~~~~~Dl~ 60 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSL-GNFEFVHGDIR 60 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTT-CCCEEEECCTT
T ss_pred cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccC-CceEEEEcCCC
Confidence 5899999999999999888888899998653 234445555541 34666666664
No 450
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=22.11 E-value=3.4e+02 Score=23.95 Aligned_cols=81 Identities=12% Similarity=0.150 Sum_probs=51.0
Q ss_pred EEEEEeC--CHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHhhcCCCCeeEEEEeCCCCC-CCChHHHHHHhc--CCcEE
Q 008254 19 RVLLLDQ--DSSAAAELKFKLEAMDYIVSTFY-NENEALSAFSDKPENFHVAIVEVTTSN-TDGSFKFLETAK--DLPTI 92 (572)
Q Consensus 19 RVLVVDD--D~~~~~~L~~lL~~~gy~V~ta~-~a~EAL~~L~e~~~~pDLVIvDv~mPd-~mdG~~lLe~Ir--dlPVI 92 (572)
+|+++.- .......+...|...|..+.... +..+....+..- ..=|++|+ +..++ ..+-.++++.++ ..+||
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~d~~i~-iS~sG~t~~~~~~~~~ak~~g~~vi 118 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANL-RPTDLMIG-VSVWRYLRDTVAALAGAAERGVPTM 118 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTC-CTTEEEEE-ECCSSCCHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcC-CCCCEEEE-EeCCCCCHHHHHHHHHHHHCCCCEE
Confidence 6666654 45567778888888999888777 566554444431 22366665 44454 112345555554 79999
Q ss_pred EEeCCCChH
Q 008254 93 ITSNIHCLS 101 (572)
Q Consensus 93 iLS~~~d~~ 101 (572)
.+|+..+..
T Consensus 119 ~IT~~~~s~ 127 (187)
T 3sho_A 119 ALTDSSVSP 127 (187)
T ss_dssp EEESCTTSH
T ss_pred EEeCCCCCc
Confidence 999976543
No 451
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=22.09 E-value=2.6e+02 Score=27.01 Aligned_cols=77 Identities=12% Similarity=-0.007 Sum_probs=47.2
Q ss_pred cEEEEE-e-CCHH---HHHHHHHHHHhCCCEEEEE------CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh
Q 008254 18 LRVLLL-D-QDSS---AAAELKFKLEAMDYIVSTF------YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (572)
Q Consensus 18 lRVLVV-D-DD~~---~~~~L~~lL~~~gy~V~ta------~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I 86 (572)
-+|.+| + ++.. ..+.++..|+..|..|... .+....+..+.. ..+|+|++... + .+...+++.+
T Consensus 150 ~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~--~~~d~v~~~~~--~-~~a~~~~~~~ 224 (366)
T 3td9_A 150 KRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMS--FNPDAIYITGY--Y-PEIALISRQA 224 (366)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHH--TCCSEEEECSC--H-HHHHHHHHHH
T ss_pred cEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHh--cCCCEEEEccc--h-hHHHHHHHHH
Confidence 478777 3 4433 3456677778888876522 355667777777 67999998432 2 3456677766
Q ss_pred c----CCcEEEEeCCCC
Q 008254 87 K----DLPTIITSNIHC 99 (572)
Q Consensus 87 r----dlPVIiLS~~~d 99 (572)
+ .+|+|.......
T Consensus 225 ~~~g~~~~~~~~~~~~~ 241 (366)
T 3td9_A 225 RQLGFTGYILAGDGADA 241 (366)
T ss_dssp HHTTCCSEEEECGGGCS
T ss_pred HHcCCCceEEeeCCcCC
Confidence 5 566654444333
No 452
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=22.05 E-value=1.6e+02 Score=30.19 Aligned_cols=54 Identities=9% Similarity=0.030 Sum_probs=41.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---EE-EEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDY---IV-STFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy---~V-~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
-+|.-||-++...+..+.-++..+. .+ ....++.+.+..+......||+||+|-
T Consensus 236 ~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DP 293 (385)
T 2b78_A 236 MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDP 293 (385)
T ss_dssp SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECC
Confidence 3899999999999999988887765 34 467888888876543225799999984
No 453
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=21.95 E-value=3.5e+02 Score=25.97 Aligned_cols=65 Identities=15% Similarity=0.051 Sum_probs=42.1
Q ss_pred cEEEEEe-CCHHH---HHHHHHHHHhCCCEEEE---E----CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh
Q 008254 18 LRVLLLD-QDSSA---AAELKFKLEAMDYIVST---F----YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (572)
Q Consensus 18 lRVLVVD-DD~~~---~~~L~~lL~~~gy~V~t---a----~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I 86 (572)
-+|.+|. |+... .+.++..|+..|..+.. + .+...++..+.. ..+|+|++.. .+ .+...+++.+
T Consensus 140 ~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~--~~~d~v~~~~--~~-~~a~~~~~~~ 214 (368)
T 4eyg_A 140 KKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKD--AKPDAMFVFV--PA-GQGGNFMKQF 214 (368)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHH--HCCSEEEEEC--CT-TCHHHHHHHH
T ss_pred CEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHh--cCCCEEEEec--cc-hHHHHHHHHH
Confidence 3565554 44332 46677778888886642 2 356677777776 5789999854 34 4677777777
Q ss_pred c
Q 008254 87 K 87 (572)
Q Consensus 87 r 87 (572)
+
T Consensus 215 ~ 215 (368)
T 4eyg_A 215 A 215 (368)
T ss_dssp H
T ss_pred H
Confidence 5
No 454
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=21.94 E-value=3.3e+02 Score=25.45 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=44.3
Q ss_pred CCHHHHHHHhhcCCCCeeEE-EEeCCCCCCC---ChHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhccccc
Q 008254 48 YNENEALSAFSDKPENFHVA-IVEVTTSNTD---GSFKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNF 120 (572)
Q Consensus 48 ~~a~EAL~~L~e~~~~pDLV-IvDv~mPd~m---dG~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~ 120 (572)
.+..+..+.+.+ ...|.+ +.|..... . ..+++++.++ ++|||+.-...+.+.+.+++.
T Consensus 30 ~d~~~~a~~~~~--~Gad~i~v~d~~~~~-~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~------------ 94 (253)
T 1thf_D 30 GDPVELGKFYSE--IGIDELVFLDITASV-EKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELIL------------ 94 (253)
T ss_dssp TCHHHHHHHHHH--TTCCEEEEEESSCSS-SHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHH------------
T ss_pred cCHHHHHHHHHH--cCCCEEEEECCchhh-cCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH------------
Confidence 355666666666 456644 44543222 1 1255666665 799999888888888888888
Q ss_pred cCCccEEEe
Q 008254 121 QLGAVEFLR 129 (572)
Q Consensus 121 ~~GA~dYL~ 129 (572)
.||+..++
T Consensus 95 -~Gad~V~l 102 (253)
T 1thf_D 95 -RGADKVSI 102 (253)
T ss_dssp -TTCSEEEE
T ss_pred -cCCCEEEE
Confidence 99998876
No 455
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=21.92 E-value=3e+02 Score=27.61 Aligned_cols=41 Identities=12% Similarity=0.306 Sum_probs=28.5
Q ss_pred HHHHhhcCCCCeeEEEEeCCCCCCCChHH-HH-----H-----HhcCCcEEEEeCC
Q 008254 53 ALSAFSDKPENFHVAIVEVTTSNTDGSFK-FL-----E-----TAKDLPTIITSNI 97 (572)
Q Consensus 53 AL~~L~e~~~~pDLVIvDv~mPd~mdG~~-lL-----e-----~IrdlPVIiLS~~ 97 (572)
||..+ . ..|||||+-++.-. .-|.+ ++ . .+..+|-|.+|-.
T Consensus 77 al~~l-~--~~PDLVvSGIN~G~-Nlg~d~v~ySGTVgAA~Ea~~~GiPaIA~S~~ 128 (280)
T 1l5x_A 77 ATFGL-G--RKYDIVLSGINLGD-NTSLQVILSSGTLGAAFQAALLGIPALAYSAY 128 (280)
T ss_dssp HHHHH-T--SCCSEEEEEEEEBC-CCSHHHHTTCHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHhcC-C--CCCCEEEECCccCC-cCCccccccchhHHHHHHHHHcCCCeEEEEcc
Confidence 45556 4 68999999998876 56666 32 1 1238999999874
No 456
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=21.82 E-value=2.8e+02 Score=27.32 Aligned_cols=108 Identities=11% Similarity=0.110 Sum_probs=61.4
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcE
Q 008254 14 FPKGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPT 91 (572)
Q Consensus 14 ~p~~lRVLVVDDD~~~~~~L~~lL~~~-gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPV 91 (572)
|.+||||-||.--..-+..+...|+.. +++|+ .++.-.+..+.+.+. ..+.-+.. +--++|+. .++-+
T Consensus 20 ~~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~-~g~~~~y~--------d~~ell~~-~~iDa 89 (350)
T 4had_A 20 FQSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADR-FSVPHAFG--------SYEEMLAS-DVIDA 89 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHH-HTCSEEES--------SHHHHHHC-SSCSE
T ss_pred ccCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH-cCCCeeeC--------CHHHHhcC-CCCCE
Confidence 557899999998766655555556555 67777 444333333333331 12211221 22233332 24555
Q ss_pred EEEeCCC--ChHHHHHHHHHHHhhhhccccccCCccEEEeCCC--CHHHHHHHHHHH
Q 008254 92 IITSNIH--CLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDKLRNLWQHV 144 (572)
Q Consensus 92 IiLS~~~--d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~eeL~~~~q~V 144 (572)
|+++... ..+.+.+|++ .|-.=|+-||+ +.++...+++.+
T Consensus 90 V~I~tP~~~H~~~~~~al~-------------aGkhVl~EKPla~~~~ea~~l~~~a 133 (350)
T 4had_A 90 VYIPLPTSQHIEWSIKAAD-------------AGKHVVCEKPLALKAGDIDAVIAAR 133 (350)
T ss_dssp EEECSCGGGHHHHHHHHHH-------------TTCEEEECSCCCSSGGGGHHHHHHH
T ss_pred EEEeCCCchhHHHHHHHHh-------------cCCEEEEeCCcccchhhHHHHHHHH
Confidence 5555443 3577788888 99999999998 456666655443
No 457
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=21.80 E-value=69 Score=29.23 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=28.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIv 69 (572)
||+|+|+|-.......+ ..|+..|+++..+...++ + ..+|.||+
T Consensus 1 ~m~I~il~~~~~~~~~~-~~l~~~g~~~~~~~~~~~----l----~~~d~iil 44 (196)
T 2nv0_A 1 MLTIGVLGLQGAVREHI-HAIEACGAAGLVVKRPEQ----L----NEVDGLIL 44 (196)
T ss_dssp CCEEEEECSSSCCHHHH-HHHHHTTCEEEEECSGGG----G----GGCSEEEE
T ss_pred CcEEEEEEccCCcHHHH-HHHHHCCCEEEEeCChHH----H----hhCCEEEE
Confidence 36899998533333333 778888998887776432 2 23677775
No 458
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=21.78 E-value=84 Score=31.31 Aligned_cols=54 Identities=22% Similarity=0.279 Sum_probs=33.6
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHHhCCCEEEEEC---CH----HHHHHHhhcCCCCeeEEEEeC
Q 008254 16 KGLRVLLLDQDS---SAAAELKFKLEAMDYIVSTFY---NE----NEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 16 ~~lRVLVVDDD~---~~~~~L~~lL~~~gy~V~ta~---~a----~EAL~~L~e~~~~pDLVIvDv 71 (572)
.+.+|+++|-|. .....|+...+..|..+.... +. .++++.++. ..+|+||+|.
T Consensus 125 ~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~--~~~D~ViIDT 188 (297)
T 1j8m_F 125 KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLS--EKMEIIIVDT 188 (297)
T ss_dssp TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHh--CCCCEEEEeC
Confidence 356899999883 333444444445566555432 33 355666664 5799999998
No 459
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=21.75 E-value=1.5e+02 Score=27.39 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=40.8
Q ss_pred cccCCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 10 AWKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 10 ~~~~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
.++++ ++.+|.++...... ..|...+ .+..+..+.+..+++++|.. ++.|++|.|.
T Consensus 133 ~~~dL-~g~~i~v~~g~~~~-~~l~~~~--~~~~~~~~~~~~~~l~~L~~--GrvDa~i~~~ 188 (267)
T 3mpk_A 133 DADHL-DGRTVALVRNSAAI-PLLQRRY--PQAKVVTADNPSEAMLMVAN--GQADAVVQTQ 188 (267)
T ss_dssp SGGGC-TTCEEEEETTCTHH-HHHHHHC--TTSEEEEESSHHHHHHHHHH--TSCSEEEEEH
T ss_pred CHHHH-CCCEEEEeCCchhH-HHHHHhC--CCcEEEEeCCHHHHHHHHHc--CCCCEEEecH
Confidence 33444 46789999876532 3333222 16789999999999999999 8999999984
No 460
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.74 E-value=82 Score=24.27 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=35.8
Q ss_pred CCCceecCHHHHHHHHHHHHHhCCCCCCCHHHHhhhCCCCCCHHHHHHhhhhhhhhhc
Q 008254 329 KKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRR 386 (572)
Q Consensus 329 kk~r~~Wt~eLh~~Fv~av~~lG~~~a~Pk~il~lM~v~glt~~~v~SHLQkyr~~~~ 386 (572)
++..-.||++=|+.|++|+.+.| ++ =..|-.+ |+|=|..+|.. .|-+.++
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~~g-k~--w~~Ia~~--l~~rt~~~~v~---~Yy~~Kk 58 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQHP-KN--FGLIASY--LERKSVPDCVL---YYYLTKK 58 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHHST-TC--HHHHHHH--CTTSCHHHHHH---HHHHHTC
T ss_pred cccCCCCCHHHHHHHHHHHHHhC-CC--HHHHHHH--cCCCCHHHHHH---HHHHhcC
Confidence 35567999999999999999999 22 2455544 57888888754 4555544
No 461
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=21.67 E-value=1.1e+02 Score=29.28 Aligned_cols=80 Identities=11% Similarity=-0.019 Sum_probs=46.8
Q ss_pred ECCHHHHHHHhhcCCCCeeEEEEeC---CC-CCCCChHHHHHHhc---CCcEE--EEeCCCChHHHHHHHHHHHhhhhcc
Q 008254 47 FYNENEALSAFSDKPENFHVAIVEV---TT-SNTDGSFKFLETAK---DLPTI--ITSNIHCLSTMMKCIAIMVMNQLFD 117 (572)
Q Consensus 47 a~~a~EAL~~L~e~~~~pDLVIvDv---~m-Pd~mdG~~lLe~Ir---dlPVI--iLS~~~d~~~~~kai~~~~~~~~~~ 117 (572)
+.+..++++.+.+ ...|++=+|+ +. |+...|+++++.++ +.|+. +++.+. ...+..+.+
T Consensus 16 ~~~l~~~i~~~~~--~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~dp-~~~i~~~~~--------- 83 (230)
T 1tqj_A 16 FSRLGEEIKAVDE--AGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEP-EKYVEDFAK--------- 83 (230)
T ss_dssp GGGHHHHHHHHHH--TTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSSG-GGTHHHHHH---------
T ss_pred HhHHHHHHHHHHH--cCCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEccCH-HHHHHHHHH---------
Confidence 3455666776665 4555554444 21 34335789999987 46776 777543 234455555
Q ss_pred ccccCCccEEEeCCC--CHHHHHHHHH
Q 008254 118 NNFQLGAVEFLRKPL--SEDKLRNLWQ 142 (572)
Q Consensus 118 ~~~~~GA~dYL~KPv--s~eeL~~~~q 142 (572)
.||+.+.+-.. ..+.+...++
T Consensus 84 ----aGadgv~vh~e~~~~~~~~~~~~ 106 (230)
T 1tqj_A 84 ----AGADIISVHVEHNASPHLHRTLC 106 (230)
T ss_dssp ----HTCSEEEEECSTTTCTTHHHHHH
T ss_pred ----cCCCEEEECcccccchhHHHHHH
Confidence 99998877554 3344444333
No 462
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=21.58 E-value=2.4e+02 Score=28.19 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=40.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CC---EEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAM--DY---IVS-TFYNENEALSAFSDKPENFHVAIVEVTTS 74 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~--gy---~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mP 74 (572)
...+|..||-++...+..+..+... ++ .|. ...++.+.+... . ..||+||+|...|
T Consensus 139 ~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-~--~~fDvIi~d~~~p 200 (321)
T 2pt6_A 139 SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-T--NTYDVIIVDSSDP 200 (321)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-C--SCEEEEEEECCCS
T ss_pred CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc-C--CCceEEEECCcCC
Confidence 3568999999999999888887652 12 343 667777766543 3 5799999997443
No 463
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=21.55 E-value=59 Score=32.08 Aligned_cols=57 Identities=12% Similarity=0.139 Sum_probs=37.6
Q ss_pred HHHHhhcCCCCeeEEEEeCCCCC-CCChHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 53 ALSAFSDKPENFHVAIVEVTTSN-TDGSFKFLETAK--DLPTIITSNIHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 53 AL~~L~e~~~~pDLVIvDv~mPd-~mdG~~lLe~Ir--dlPVIiLS~~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
+++.+.+ ...|+|++-...-- ..+-+++++++| ++|+|++..+.+ . +..||+.||.
T Consensus 28 ~l~~~~~--~GtDaI~vGgs~gvt~~~~~~~v~~ik~~~~Piil~p~~~~------~-------------~~~gaD~il~ 86 (235)
T 3w01_A 28 DLDAICM--SQTDAIMIGGTDDVTEDNVIHLMSKIRRYPLPLVLEISNIE------S-------------VMPGFDFYFV 86 (235)
T ss_dssp HHHHHHT--SSCSEEEECCSSCCCHHHHHHHHHHHTTSCSCEEEECCCST------T-------------CCTTCSEEEE
T ss_pred HHHHHHH--cCCCEEEECCcCCcCHHHHHHHHHHhcCcCCCEEEecCCHH------H-------------hhcCCCEEEE
Confidence 3443444 57899998775311 023577778887 899999988642 2 2379999987
Q ss_pred C
Q 008254 130 K 130 (572)
Q Consensus 130 K 130 (572)
-
T Consensus 87 p 87 (235)
T 3w01_A 87 P 87 (235)
T ss_dssp E
T ss_pred c
Confidence 5
No 464
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=21.45 E-value=3.7e+02 Score=27.64 Aligned_cols=85 Identities=16% Similarity=0.123 Sum_probs=57.3
Q ss_pred HHHHHHHHHhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEeCC----CCCCCChHHHHHHhc-----CCcEEEEeCCC
Q 008254 30 AAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVT----TSNTDGSFKFLETAK-----DLPTIITSNIH 98 (572)
Q Consensus 30 ~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~----mPd~mdG~~lLe~Ir-----dlPVIiLS~~~ 98 (572)
.+.++.+-+..+. .|-.+.+.++|..+... ..|.|++.-+ +.....-++++..++ ++|||.-.+..
T Consensus 218 ~~~i~~lr~~~~~PvivK~v~~~e~a~~a~~~---Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~ 294 (368)
T 2nli_A 218 PRDIEEIAGHSGLPVFVKGIQHPEDADMAIKR---GASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVR 294 (368)
T ss_dssp HHHHHHHHHHSSSCEEEEEECSHHHHHHHHHT---TCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSCC
T ss_pred HHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHc---CCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCCC
Confidence 4445555554544 33356788888777655 6888887431 110012356666554 69999999999
Q ss_pred ChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 99 CLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 99 d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
+...+.+++. +||+...+=
T Consensus 295 ~g~D~~kala-------------lGAd~V~iG 313 (368)
T 2nli_A 295 RGEHVAKALA-------------SGADVVALG 313 (368)
T ss_dssp SHHHHHHHHH-------------TTCSEEEEC
T ss_pred CHHHHHHHHH-------------cCCCEEEEC
Confidence 9999999999 999988774
No 465
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=21.44 E-value=65 Score=34.05 Aligned_cols=53 Identities=21% Similarity=0.167 Sum_probs=31.1
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCCEEEEEC---CH----HHHHHHhhcCCCCeeEEEEeC
Q 008254 17 GLRVLLLDQDSS---AAAELKFKLEAMDYIVSTFY---NE----NEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 17 ~lRVLVVDDD~~---~~~~L~~lL~~~gy~V~ta~---~a----~EAL~~L~e~~~~pDLVIvDv 71 (572)
+.+|++||-|+. ....|...-...+..+.... +. .+++..++. ..+|+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~--~~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKL--KFYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 678888888852 22223323333455555432 22 345666664 5799999998
No 466
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=21.42 E-value=1.1e+02 Score=31.22 Aligned_cols=101 Identities=13% Similarity=0.137 Sum_probs=54.8
Q ss_pred CCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc---CCcEEEEeCCCChHHHHHHHHHHHhhhhc
Q 008254 41 DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIAIMVMNQLF 116 (572)
Q Consensus 41 gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir---dlPVIiLS~~~d~~~~~kai~~~~~~~~~ 116 (572)
.+.+. .+.+.++|+.+.+..-+++.|. .++..++.-.++.+++.++ ++||.+|-....-+.+.....+-+|.+..
T Consensus 39 ~~~lEvc~~s~~~a~~A~~gGAdRIELc-~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI 117 (287)
T 3iwp_A 39 GFLMEVCVDSVESAVNAERGGADRIELC-SGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADI 117 (287)
T ss_dssp CSEEEEEESSHHHHHHHHHHTCSEEEEC-BCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHhCCCEEEEC-CCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHH
Confidence 45554 5778888888887622333332 2222333224577777775 79998886554321111111112333444
Q ss_pred cccccCCccEEEeCC------CCHHHHHHHHH
Q 008254 117 DNNFQLGAVEFLRKP------LSEDKLRNLWQ 142 (572)
Q Consensus 117 ~~~~~~GA~dYL~KP------vs~eeL~~~~q 142 (572)
..+.++||+++..=- ++.+.+...+.
T Consensus 118 ~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~ 149 (287)
T 3iwp_A 118 RLAKLYGADGLVFGALTEDGHIDKELCMSLMA 149 (287)
T ss_dssp HHHHHTTCSEEEECCBCTTSCBCHHHHHHHHH
T ss_pred HHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHH
Confidence 455569999998763 44555555444
No 467
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=21.40 E-value=2.2e+02 Score=25.28 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=41.1
Q ss_pred cccCCCCccEEEEEeCCHHHHHHHHHHHHhCC---CEEEEE-CCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 10 AWKDFPKGLRVLLLDQDSSAAAELKFKLEAMD---YIVSTF-YNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 10 ~~~~~p~~lRVLVVDDD~~~~~~L~~lL~~~g---y~V~ta-~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
.++++ ++.+|.++.... ....+..++...+ ..+... .+..+++++|.. ++.|+++.|.
T Consensus 109 ~~~dL-~g~~i~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~--g~vDa~~~~~ 170 (246)
T 4eq9_A 109 SLDDI-GGKSTEVVQATT-SAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSD--GQFDYKIFDK 170 (246)
T ss_dssp SGGGC-TTCEEEECTTCH-HHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHT--TSSSEEEEEH
T ss_pred CHHHh-CCCEEEEecCcc-HHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHc--CCceEEEecH
Confidence 34444 367888876654 4566677666654 455533 489999999999 8999999875
No 468
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=21.40 E-value=2.2e+02 Score=28.94 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=41.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 18 LRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 18 lRVLVVDDD~~~~~~L~~lL~~~gy--~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
.+|+.||-++...+..+.-++..+. .+. ...+..+.+..+......||+||+|.
T Consensus 241 ~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dp 297 (396)
T 2as0_A 241 DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP 297 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEECC
Confidence 4899999999999999999888775 343 67788887765542125799999985
No 469
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=21.36 E-value=1.4e+02 Score=31.49 Aligned_cols=54 Identities=22% Similarity=0.234 Sum_probs=33.6
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECC---H----HHHHHHhhcCCCCeeEEEEeC
Q 008254 16 KGLRVLLLDQDSS---AAAELKFKLEAMDYIVSTFYN---E----NEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 16 ~~lRVLVVDDD~~---~~~~L~~lL~~~gy~V~ta~~---a----~EAL~~L~e~~~~pDLVIvDv 71 (572)
.+.+|+++|-|.. ....|...-+..+..+..... . .++++.++. ..+|+||+|.
T Consensus 125 ~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~--~~~DvVIIDT 188 (425)
T 2ffh_A 125 KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL--EARDLILVDT 188 (425)
T ss_dssp TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred cCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHH--CCCCEEEEcC
Confidence 4678999998843 223344443445666665432 2 345666654 5799999997
No 470
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=21.22 E-value=1.5e+02 Score=29.62 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=39.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CC---EEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAM--DY---IVS-TFYNENEALSAFSDKPENFHVAIVEVTTS 74 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~--gy---~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mP 74 (572)
...+|..||-++...+..+..+... ++ .|. ...++.+.+.. .. ..||+||+|...|
T Consensus 131 ~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~-~~--~~fD~Ii~d~~~~ 192 (314)
T 2b2c_A 131 SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HK--NEFDVIITDSSDP 192 (314)
T ss_dssp TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CT--TCEEEEEECCC--
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh-cC--CCceEEEEcCCCC
Confidence 3468999999999999988888653 22 343 56777776654 23 5799999987543
No 471
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=21.18 E-value=2e+02 Score=27.58 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=47.0
Q ss_pred cEEEEEe-CCHH---HHHHHHHHHHhCCCEEEE---E----CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh
Q 008254 18 LRVLLLD-QDSS---AAAELKFKLEAMDYIVST---F----YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (572)
Q Consensus 18 lRVLVVD-DD~~---~~~~L~~lL~~~gy~V~t---a----~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I 86 (572)
-+|.+|. |+.. ..+.++..|+..|..+.. + .+...++..+.. ..+|+||+..... ....+++.+
T Consensus 140 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~--~~~d~i~~~~~~~---~a~~~~~~~ 214 (358)
T 3hut_A 140 TSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIED--EAPQAIYLAMAYE---DAAPFLRAL 214 (358)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHH--HCCSEEEEESCHH---HHHHHHHHH
T ss_pred CEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHh--cCCCEEEEccCch---HHHHHHHHH
Confidence 4666664 4433 345566777777876642 2 355667777766 5789988864321 345666666
Q ss_pred c----CCcEEEEeCCCChH
Q 008254 87 K----DLPTIITSNIHCLS 101 (572)
Q Consensus 87 r----dlPVIiLS~~~d~~ 101 (572)
+ .+|+|.........
T Consensus 215 ~~~g~~~p~~~~~~~~~~~ 233 (358)
T 3hut_A 215 RARGSALPVYGSSALYSPK 233 (358)
T ss_dssp HHTTCCCCEEECGGGCSHH
T ss_pred HHcCCCCcEEecCcccCHH
Confidence 4 67876555444433
No 472
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=21.17 E-value=98 Score=29.14 Aligned_cols=36 Identities=14% Similarity=0.023 Sum_probs=30.2
Q ss_pred cCCCChhHHHHHHHHHhcchhhhhhccccccccccc
Q 008254 157 SDSLKPVKESVVSMLHLKLENGESKNEKSENTEYVL 192 (572)
Q Consensus 157 ~~sLt~RE~eVL~ll~~~len~e~~~e~s~~~e~v~ 192 (572)
...||++|++|+.++..|..+++......+...+|.
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~s~~eIa~~l~is~~tV~ 208 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGKTASVTANLTGINARTVQ 208 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHH
Confidence 567999999999999999999999887777665553
No 473
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=21.03 E-value=1.9e+02 Score=27.79 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhCCCEEEEEC----CHH---HHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeC
Q 008254 29 AAAELKFKLEAMDYIVSTFY----NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta~----~a~---EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~ 96 (572)
+...++..++..||.+.... +.. +.++.+.. ..+|.||+....+. .....++.++ .+|||++..
T Consensus 21 ~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~--~~vdgiii~~~~~~--~~~~~~~~a~~~gipvV~~d~ 93 (316)
T 1tjy_A 21 GGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVN--QGYDAIIVSAVSPD--GLCPALKRAMQRGVKILTWDS 93 (316)
T ss_dssp HHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHH--TTCSEEEECCSSSS--TTHHHHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHH--cCCCEEEEeCCCHH--HHHHHHHHHHHCcCEEEEecC
Confidence 45566777777899887642 333 34555556 57998887543222 2245666664 799998854
No 474
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=21.03 E-value=2e+02 Score=22.38 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=36.6
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCCHHHHhhhCCCCCCHHHHHHhhhhhhhhhc
Q 008254 332 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRR 386 (572)
Q Consensus 332 r~~Wt~eLh~~Fv~av~~lG~~~a~Pk~il~lM~v~glt~~~v~SHLQkyr~~~~ 386 (572)
|-.||+|=-...+++|++.|..+ =+.|.+.+...|=|-.+++ .+||.+++
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~--W~~Ia~~~~~~~Rt~~qcr---~Rw~nl~k 60 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGN--WAAISKNYPFVNRTAVMIK---DRWRTMKR 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTC--HHHHHHHSCCSSCCHHHHH---HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCc--hHHHHhhcCCCCCCHHHHH---HHHHHHhc
Confidence 45799999999999999999532 3567777777777777764 34554443
No 475
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=21.00 E-value=2.1e+02 Score=26.43 Aligned_cols=80 Identities=11% Similarity=0.218 Sum_probs=49.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHh-hcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEE
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAF-SDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L-~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIi 93 (572)
.++.+|||..-..-+-..+...|.+.|+.|..+....+.++.+ .+....+.++.+|+.-++ +-.++++.+..+-+|+
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~--~~~~~~~~~~~id~li 89 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKE--ECSNLISKTSNLDILV 89 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHH--HHHHHHHTCSCCSEEE
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHH--HHHHHHHhcCCCCEEE
Confidence 4567899999999999999999999999888555444444333 221135566666664332 2233444444555665
Q ss_pred EeC
Q 008254 94 TSN 96 (572)
Q Consensus 94 LS~ 96 (572)
..+
T Consensus 90 ~~A 92 (249)
T 3f9i_A 90 CNA 92 (249)
T ss_dssp ECC
T ss_pred ECC
Confidence 544
No 476
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=20.96 E-value=3.2e+02 Score=24.76 Aligned_cols=84 Identities=11% Similarity=0.054 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhCCCEEEE-EC---CHHHHHHHhhcCCCCeeEE-EEeCCC---CC-CCChHHHHHHhc--CCcEEEEeCC
Q 008254 29 AAAELKFKLEAMDYIVST-FY---NENEALSAFSDKPENFHVA-IVEVTT---SN-TDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~t-a~---~a~EAL~~L~e~~~~pDLV-IvDv~m---Pd-~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
....+...+++.|..+.. +. +..+.++.+.+ ...|+| +.=... ++ ...+ +.+++++ ++|+++.-+.
T Consensus 91 ~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~--~g~d~v~~~~~~~~~~~g~~~~~-~~i~~~~~~~~pi~v~GGI 167 (207)
T 3ajx_A 91 TIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRA--LGAKFVEMHAGLDEQAKPGFDLN-GLLAAGEKARVPFSVAGGV 167 (207)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH--TTCSEEEEECCHHHHTSTTCCTH-HHHHHHHHHTSCEEEESSC
T ss_pred HHHHHHHHHHHcCCceEEEEecCCChHHHHHHHHH--hCCCEEEEEecccccccCCCchH-HHHHHhhCCCCCEEEECCc
Confidence 344555556555655532 32 55664555544 357887 431111 12 0122 6666665 7888766555
Q ss_pred CChHHHHHHHHHHHhhhhccccccCCccEEEe
Q 008254 98 HCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 98 ~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~ 129 (572)
. .+.+.++++ .||+.+++
T Consensus 168 ~-~~~~~~~~~-------------aGad~vvv 185 (207)
T 3ajx_A 168 K-VATIPAVQK-------------AGAEVAVA 185 (207)
T ss_dssp C-GGGHHHHHH-------------TTCSEEEE
T ss_pred C-HHHHHHHHH-------------cCCCEEEE
Confidence 4 677888888 99998764
No 477
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=20.76 E-value=1.9e+02 Score=24.80 Aligned_cols=75 Identities=9% Similarity=0.071 Sum_probs=46.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHh-cCCcEEE
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA-KDLPTII 93 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy--~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~I-rdlPVIi 93 (572)
+.+|..+|-++...+..+..+...+. .+....+..+.+ ......||+|++...+.. ...++.+.++ +.--+++
T Consensus 49 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~ 124 (178)
T 3hm2_A 49 QTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAF---DDVPDNPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLV 124 (178)
T ss_dssp SEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGG---GGCCSCCSEEEECC-TTC-TTHHHHHHHTCCTTCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhh---hccCCCCCEEEECCcccH-HHHHHHHHHhcCCCCEEE
Confidence 46899999999999999988887765 354445544433 221146999998876655 4455544443 4323344
Q ss_pred Ee
Q 008254 94 TS 95 (572)
Q Consensus 94 LS 95 (572)
++
T Consensus 125 ~~ 126 (178)
T 3hm2_A 125 AN 126 (178)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 478
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=20.75 E-value=2.2e+02 Score=27.93 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=37.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh---C--CCEE-EEECCHHHHHHHhhcCCCCeeEEEEeCCCCC
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEA---M--DYIV-STFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~---~--gy~V-~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd 75 (572)
...+|..||-++...+..+..+.. . .-.| ....++.+.+..+.. ..||+||+|...+.
T Consensus 118 ~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~--~~fDvIi~d~~~~~ 181 (304)
T 3bwc_A 118 TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPD--NTYDVVIIDTTDPA 181 (304)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCT--TCEEEEEEECC---
T ss_pred CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccC--CceeEEEECCCCcc
Confidence 346899999999998888877632 1 1123 356777665543223 67999999976554
No 479
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=20.66 E-value=2.9e+02 Score=27.19 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=41.8
Q ss_pred CHHHHH---HHhhcCCCCeeEEEEe----CC--CC----CCCChHHHHHHhcCCcEEEEeCCCCh------HHHHHHHHH
Q 008254 49 NENEAL---SAFSDKPENFHVAIVE----VT--TS----NTDGSFKFLETAKDLPTIITSNIHCL------STMMKCIAI 109 (572)
Q Consensus 49 ~a~EAL---~~L~e~~~~pDLVIvD----v~--mP----d~mdG~~lLe~IrdlPVIiLS~~~d~------~~~~kai~~ 109 (572)
+.++++ +.+... +..+++|+. .. -+ + +..+..+++..++|||+.+++..- .....|++
T Consensus 142 t~~e~~~Av~~i~~~-Gn~~i~L~~RG~~~~~~y~~~~v~-L~ai~~lk~~~~~pVi~d~sH~~g~~~~v~~~~~aAva- 218 (262)
T 1zco_A 142 TIQELLYSAEYIMAQ-GNENVILCERGIRTFETATRFTLD-ISAVPVVKELSHLPIIVDPSHPAGRRSLVIPLAKAAYA- 218 (262)
T ss_dssp CHHHHHHHHHHHHTT-TCCCEEEEECCBCCSCCSSSSBCC-TTHHHHHHHHBSSCEEECSSTTTCSGGGHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHC-CCCeEEEEECCCCCCCCcChhhcC-HHHHHHHHhhhCCCEEEEcCCCCCccchHHHHHHHHHH-
Confidence 455544 444542 557888887 21 11 3 456777777668999888887533 33455666
Q ss_pred HHhhhhccccccCCccEEEe
Q 008254 110 MVMNQLFDNNFQLGAVEFLR 129 (572)
Q Consensus 110 ~~~~~~~~~~~~~GA~dYL~ 129 (572)
.||++.++
T Consensus 219 ------------~Ga~Gl~i 226 (262)
T 1zco_A 219 ------------IGADGIMV 226 (262)
T ss_dssp ------------TTCSEEEE
T ss_pred ------------cCCCEEEE
Confidence 99998765
No 480
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=20.59 E-value=1.8e+02 Score=27.42 Aligned_cols=81 Identities=12% Similarity=0.116 Sum_probs=48.2
Q ss_pred HHHHHHhCCCEEE-EE--CCHHHHHHHhhcCCC--CeeEEEEeCCCCCCCCh-------HHHHHHhc----CCcEEEEeC
Q 008254 33 LKFKLEAMDYIVS-TF--YNENEALSAFSDKPE--NFHVAIVEVTTSNTDGS-------FKFLETAK----DLPTIITSN 96 (572)
Q Consensus 33 L~~lL~~~gy~V~-ta--~~a~EAL~~L~e~~~--~pDLVIvDv~mPd~mdG-------~~lLe~Ir----dlPVIiLS~ 96 (572)
+.+.++..|..+. .+ .+..+.++.+.. . ..|.|+++...|+ .+| ++.+++++ ++||++.-+
T Consensus 105 ~~~~i~~~g~~igv~~~p~t~~e~~~~~~~--~~~~~d~vl~~sv~pg-~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GG 181 (228)
T 1h1y_A 105 LIQSIKAKGMRPGVSLRPGTPVEEVFPLVE--AENPVELVLVMTVEPG-FGGQKFMPEMMEKVRALRKKYPSLDIEVDGG 181 (228)
T ss_dssp HHHHHHHTTCEEEEEECTTSCGGGGHHHHH--SSSCCSEEEEESSCTT-CSSCCCCGGGHHHHHHHHHHCTTSEEEEESS
T ss_pred HHHHHHHcCCCEEEEEeCCCCHHHHHHHHh--cCCCCCEEEEEeecCC-CCcccCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 3444455566544 33 333455555544 2 5789998876665 333 44445443 677765544
Q ss_pred CCChHHHHHHHHHHHhhhhccccccCCccEEEeC
Q 008254 97 IHCLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRK 130 (572)
Q Consensus 97 ~~d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~K 130 (572)
.. .+.+.+++. .||+.+++=
T Consensus 182 I~-~~ni~~~~~-------------aGaD~vvvG 201 (228)
T 1h1y_A 182 LG-PSTIDVAAS-------------AGANCIVAG 201 (228)
T ss_dssp CS-TTTHHHHHH-------------HTCCEEEES
T ss_pred cC-HHHHHHHHH-------------cCCCEEEEC
Confidence 44 467777777 899988763
No 481
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=20.57 E-value=1.5e+02 Score=30.61 Aligned_cols=83 Identities=24% Similarity=0.258 Sum_probs=51.4
Q ss_pred HHHHHHHhhcCCCCeeEEEEeCCCCCCCC---hH----------HH---HHHh---cCCcEEEEeCCCChHHHHHHHHHH
Q 008254 50 ENEALSAFSDKPENFHVAIVEVTTSNTDG---SF----------KF---LETA---KDLPTIITSNIHCLSTMMKCIAIM 110 (572)
Q Consensus 50 a~EAL~~L~e~~~~pDLVIvDv~mPd~md---G~----------~l---Le~I---rdlPVIiLS~~~d~~~~~kai~~~ 110 (572)
...|++.+.+-...+|++=+.+ |+.++ || +. .+++ ..+|+|++|+-.+.+...+.+.
T Consensus 190 V~~a~R~~~~~elGaDv~Kve~--p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~~~P~v~lsgG~~~~~fl~~v~-- 265 (332)
T 3iv3_A 190 VNDAMKVFSAERFGIDVLKVEV--PVNMVYVEGFAEGEVVYSKEEAAQAFREQEASTDLPYIYLSAGVSAELFQETLV-- 265 (332)
T ss_dssp HHHHHHHHTSGGGCCSEEEECC--SSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTCSSCEEEECTTCCHHHHHHHHH--
T ss_pred HHHHHHHHhhcCcCCcEEEEec--CCChhhhcccccccccccHHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHH--
Confidence 3456666632114789888875 43121 33 22 2222 2799999998877655555443
Q ss_pred HhhhhccccccCCc--cEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008254 111 VMNQLFDNNFQLGA--VEFLRKPLSEDKLRNLWQHVVHKAFN 150 (572)
Q Consensus 111 ~~~~~~~~~~~~GA--~dYL~KPvs~eeL~~~~q~Vlrr~~~ 150 (572)
.|.+.|| .+++.= +++|++.+.....
T Consensus 266 -------~A~~aGa~f~Gv~~G-------Rnvwq~~v~~~~~ 293 (332)
T 3iv3_A 266 -------FAHKAGAKFNGVLCG-------RATWAGSVQVYME 293 (332)
T ss_dssp -------HHHHHTCCCCEEEEC-------HHHHTTHHHHHHH
T ss_pred -------HHHHcCCCcceEEee-------HHHHHhhhhhhcc
Confidence 3555999 999985 6788887765443
No 482
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=20.47 E-value=2e+02 Score=28.89 Aligned_cols=55 Identities=9% Similarity=0.070 Sum_probs=39.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC---EEE-EECCHHHHHHHhhcCCCCeeEEEEeC
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDY---IVS-TFYNENEALSAFSDKPENFHVAIVEV 71 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy---~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv 71 (572)
+.+|..||-++...+..+.-++..+. .+. ...+..+.+..+......||+||+|.
T Consensus 175 ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dP 233 (332)
T 2igt_A 175 GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 233 (332)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECC
Confidence 34899999999999998888876654 243 56777777654431115799999985
No 483
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=20.43 E-value=1.3e+02 Score=24.69 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=36.6
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCCHHHHhhh-CCCCCCHHHHHHhhhhh
Q 008254 334 DWTPELHKKFVQAVEQLGVDQAIPSRILELM-KVEGLTRHNVASHLQKY 381 (572)
Q Consensus 334 ~Wt~eLh~~Fv~av~~lG~~~a~Pk~il~lM-~v~glt~~~v~SHLQky 381 (572)
.||.+=.+.|.+|+..++. .+|-+-..+- -|+|=|.++|..|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~~--~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPK--HKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCS--SSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCCC--CCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5999999999999999873 4788765543 47899999998775544
No 484
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=20.40 E-value=2.5e+02 Score=27.06 Aligned_cols=33 Identities=9% Similarity=0.191 Sum_probs=25.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCC--CEEEEE
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMD--YIVSTF 47 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~g--y~V~ta 47 (572)
.++++|||..-.-.+-..|...|.+.| +.|+..
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~ 56 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINF 56 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEE
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEE
Confidence 456899999999999888888888777 666643
No 485
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=20.22 E-value=1.8e+02 Score=31.04 Aligned_cols=58 Identities=16% Similarity=0.039 Sum_probs=43.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCE-EE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCC
Q 008254 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYI-VS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (572)
Q Consensus 15 p~~lRVLVVDDD~~~~~~L~~lL~~~gy~-V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd 75 (572)
+..-+|+.+|-++...+.++.-++..|.. |. +..++.+....+ . ..||+||+|.-..+
T Consensus 128 ~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~-~--~~FD~Il~DaPCSg 187 (456)
T 3m4x_A 128 KGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHF-S--GFFDRIVVDAPCSG 187 (456)
T ss_dssp TTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHH-T--TCEEEEEEECCCCC
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhc-c--ccCCEEEECCCCCC
Confidence 34458999999999999999999988763 44 556777655444 3 57999999975444
No 486
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=20.15 E-value=3.5e+02 Score=29.75 Aligned_cols=35 Identities=17% Similarity=0.073 Sum_probs=24.6
Q ss_pred cCCCCccEEEEEeCCHHHHHHHHHHHHhCCCEEEE
Q 008254 12 KDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVST 46 (572)
Q Consensus 12 ~~~p~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~t 46 (572)
+++.++.++||--.|..-...+.+.|...||++..
T Consensus 5 ~~~~~i~~aLISVsDK~glvelAk~L~~lGfeI~A 39 (523)
T 3zzm_A 5 DGRRPIRRALISVYDKTGLVDLAQGLSAAGVEIIS 39 (523)
T ss_dssp CCCCCCCEEEEEESSCTTHHHHHHHHHHTTCEEEE
T ss_pred cccccccEEEEEEeccccHHHHHHHHHHCCCEEEE
Confidence 34433457776556667777888888999999874
No 487
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=20.12 E-value=2.1e+02 Score=28.48 Aligned_cols=74 Identities=8% Similarity=0.013 Sum_probs=44.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEe
Q 008254 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (572)
Q Consensus 16 ~~lRVLVVDDD~~~~~~L~~lL~~~gy~V~ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS 95 (572)
++++|||..-.-.+-..|...|.+.||+|+.+.........+.. ....++..|+. + --.+.+.+..+-+|+-.
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--~~v~~~~~Dl~--d---~~~~~~~~~~~d~Vih~ 100 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDM--FCDEFHLVDLR--V---MENCLKVTEGVDHVFNL 100 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGG--TCSEEEECCTT--S---HHHHHHHHTTCSEEEEC
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhcc--CCceEEECCCC--C---HHHHHHHhCCCCEEEEC
Confidence 46799999999999999988888889998865432211111112 24566666653 2 22233334455566554
Q ss_pred C
Q 008254 96 N 96 (572)
Q Consensus 96 ~ 96 (572)
+
T Consensus 101 A 101 (379)
T 2c5a_A 101 A 101 (379)
T ss_dssp C
T ss_pred c
Confidence 3
No 488
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=20.05 E-value=83 Score=31.86 Aligned_cols=61 Identities=11% Similarity=0.030 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCCEEEEE--CCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhc--CCcEEEEeCC
Q 008254 29 AAAELKFKLEAMDYIVSTF--YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (572)
Q Consensus 29 ~~~~L~~lL~~~gy~V~ta--~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~Ir--dlPVIiLS~~ 97 (572)
+..++...++..||.+..+ .+..+.++.+.. ..+|-||+. +. ..++++.+. .+|||++...
T Consensus 42 l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l~~--~~vDGiIi~---~~---~~~~~~~l~~~~iPvV~i~~~ 106 (412)
T 4fe7_A 42 VVEGVGEYLQASQSEWDIFIEEDFRARIDKIKD--WLGDGVIAD---FD---DKQIEQALADVDVPIVGVGGS 106 (412)
T ss_dssp HHHHHHHHHHHHTCCEEEEECC-CC----------CCCSEEEEE---TT---CHHHHHHHTTCCSCEEEEEEC
T ss_pred HHHHHHHHHHhcCCCeEEEecCCccchhhhHhc--CCCCEEEEe---cC---ChHHHHHHhhCCCCEEEecCC
Confidence 4566667777778876643 333456777777 689988883 22 245566665 7999988643
No 489
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=20.04 E-value=4.8e+02 Score=25.63 Aligned_cols=106 Identities=12% Similarity=0.163 Sum_probs=53.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEeCCCCCCCChHHHHHHhcCCcEEEEe
Q 008254 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (572)
Q Consensus 17 ~lRVLVVDDD~~~~~~L~~lL~~~gy~V~-ta~~a~EAL~~L~e~~~~pDLVIvDv~mPd~mdG~~lLe~IrdlPVIiLS 95 (572)
++||.||.--..-...+..+.+..+++++ .+....+..+.+.+. ....-+. .+--++++. .++-+|+++
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~-~~~~~~~--------~~~~~ll~~-~~~D~V~i~ 71 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEK-LGVEKAY--------KDPHELIED-PNVDAVLVC 71 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHH-HTCSEEE--------SSHHHHHHC-TTCCEEEEC
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH-hCCCcee--------CCHHHHhcC-CCCCEEEEc
Confidence 36788888765544444443333466666 344333333333220 1111111 122233331 134444444
Q ss_pred CCC--ChHHHHHHHHHHHhhhhccccccCCccEEEeCCC--CHHHHHHHHHHHH
Q 008254 96 NIH--CLSTMMKCIAIMVMNQLFDNNFQLGAVEFLRKPL--SEDKLRNLWQHVV 145 (572)
Q Consensus 96 ~~~--d~~~~~kai~~~~~~~~~~~~~~~GA~dYL~KPv--s~eeL~~~~q~Vl 145 (572)
... ..+.+..|++ .|..=|+-||+ +.++...+++.+-
T Consensus 72 tp~~~h~~~~~~al~-------------~gk~v~~EKP~~~~~~e~~~l~~~a~ 112 (344)
T 3ezy_A 72 SSTNTHSELVIACAK-------------AKKHVFCEKPLSLNLADVDRMIEETK 112 (344)
T ss_dssp SCGGGHHHHHHHHHH-------------TTCEEEEESCSCSCHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHh-------------cCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 433 3455667777 99999999994 6677776555443
Done!