Query 008256
Match_columns 572
No_of_seqs 327 out of 1352
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 21:53:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y4s_A Chaperone protein HTPG; 99.7 7.4E-17 2.5E-21 178.4 19.2 96 99-203 24-145 (559)
2 1b63_A MUTL; DNA mismatch repa 99.7 7E-17 2.4E-21 168.4 13.4 89 107-204 23-119 (333)
3 2ioq_A Chaperone protein HTPG; 99.7 8.7E-17 3E-21 179.8 14.2 96 99-203 24-145 (624)
4 2o1u_A Endoplasmin; GRP94, HSP 99.7 3.9E-16 1.3E-20 175.3 16.7 96 99-203 42-166 (666)
5 3na3_A DNA mismatch repair pro 99.6 1.5E-15 5E-20 159.4 13.1 90 107-204 27-123 (348)
6 3h4l_A DNA mismatch repair pro 99.6 1.2E-14 4E-19 153.6 16.4 89 107-203 24-119 (367)
7 1h7s_A PMS1 protein homolog 2; 99.6 6.3E-15 2.1E-19 155.6 12.8 90 107-204 33-129 (365)
8 2cg9_A ATP-dependent molecular 99.5 3E-13 1E-17 152.2 22.5 97 98-203 22-142 (677)
9 2wer_A ATP-dependent molecular 99.4 8.3E-14 2.8E-18 137.1 5.6 97 98-203 22-142 (220)
10 3peh_A Endoplasmin homolog; st 99.4 1.9E-13 6.6E-18 139.2 8.3 97 98-203 42-163 (281)
11 3t0h_A Heat shock protein HSP 99.4 9.7E-14 3.3E-18 137.8 5.1 96 99-203 29-148 (228)
12 2ior_A Chaperone protein HTPG; 99.4 9.2E-14 3.1E-18 138.3 4.9 92 110-204 49-166 (235)
13 3nmq_A Heat shock protein HSP 99.4 1.7E-13 5.7E-18 136.9 6.4 105 87-203 27-155 (239)
14 3o0i_A HSP90AA1 protein; HSP90 99.4 1.2E-13 4E-18 139.2 4.7 105 87-203 48-176 (256)
15 1yc1_A HSP 86, heat shock prot 99.4 1.4E-13 5E-18 139.3 5.1 96 99-203 65-184 (264)
16 3ied_A Heat shock protein; HSP 99.4 6.6E-13 2.2E-17 133.5 9.2 95 97-200 42-197 (272)
17 2gqp_A Endoplasmin; GRP94, HSP 99.4 1.5E-13 5.3E-18 136.9 4.2 96 99-203 29-153 (236)
18 1qy5_A Endoplasmin; GRP94, NEC 99.4 2.7E-13 9.2E-18 137.7 5.3 97 98-203 24-149 (269)
19 1s16_A Topoisomerase IV subuni 99.1 5E-10 1.7E-14 119.2 14.8 108 84-202 11-133 (390)
20 1ei1_A DNA gyrase B, GYRB; ATP 99.1 6.3E-10 2.2E-14 118.5 14.2 119 73-202 3-136 (391)
21 4duh_A DNA gyrase subunit B; s 99.0 4.3E-10 1.5E-14 111.0 5.4 113 84-203 11-138 (220)
22 1kij_A DNA gyrase subunit B; t 98.9 8E-09 2.7E-13 109.9 13.5 110 85-202 10-134 (390)
23 3cwv_A DNA gyrase, B subunit, 98.9 1.2E-08 4.2E-13 107.8 14.4 105 87-203 10-120 (369)
24 3fv5_A DNA topoisomerase 4 sub 98.8 1.7E-09 5.8E-14 105.3 4.5 88 110-203 19-120 (201)
25 4emv_A DNA topoisomerase IV, B 98.6 1.5E-08 5E-13 100.5 3.8 121 71-203 8-142 (226)
26 3lnu_A Topoisomerase IV subuni 98.4 1.6E-07 5.6E-12 100.3 4.3 117 72-203 22-153 (408)
27 1zxm_A TOPO IIA ATPase, DNA to 98.3 2.3E-07 8E-12 99.0 4.8 91 107-202 51-156 (400)
28 3ttz_A DNA gyrase subunit B; p 98.3 1.4E-06 4.8E-11 84.6 8.3 98 88-203 12-111 (198)
29 1mu5_A Type II DNA topoisomera 98.2 8.5E-07 2.9E-11 96.5 6.2 97 108-204 32-137 (471)
30 2zbk_B Type 2 DNA topoisomeras 98.1 1.2E-06 4.2E-11 96.6 4.6 96 108-203 31-135 (530)
31 1id0_A PHOQ histidine kinase; 98.1 5.2E-06 1.8E-10 73.9 6.5 86 109-202 45-133 (152)
32 1i58_A Chemotaxis protein CHEA 98.0 3.2E-06 1.1E-10 78.7 4.7 90 111-202 50-177 (189)
33 2c2a_A Sensor histidine kinase 98.0 3.5E-06 1.2E-10 82.1 4.1 93 108-202 138-236 (258)
34 1ysr_A Sensor-type histidine k 98.0 7.5E-06 2.6E-10 73.1 5.9 88 109-202 47-137 (150)
35 2q2e_B Type 2 DNA topoisomeras 98.0 3.3E-06 1.1E-10 94.7 3.8 95 108-203 37-140 (621)
36 4ew8_A Sensor protein DIVL; si 97.9 8.5E-06 2.9E-10 79.3 5.5 89 109-202 156-244 (268)
37 3a0y_A Sensor protein; ATP-LID 97.9 1.3E-05 4.3E-10 71.1 6.1 86 108-201 47-136 (152)
38 2q8g_A [pyruvate dehydrogenase 97.9 1.2E-05 4.1E-10 84.9 6.8 93 108-202 243-351 (407)
39 2btz_A Pyruvate dehydrogenase 97.9 1.3E-05 4.4E-10 84.2 6.8 93 108-202 231-338 (394)
40 1r62_A Nitrogen regulation pro 97.9 5.9E-06 2E-10 73.8 3.4 86 109-201 49-147 (160)
41 1pvg_A DNA topoisomerase II; G 97.9 1.1E-05 3.9E-10 86.5 6.0 89 108-201 64-167 (418)
42 1bxd_A ENVZ(290-450), protein 97.8 1.1E-05 3.7E-10 73.0 4.7 89 108-202 47-138 (161)
43 1b3q_A Protein (chemotaxis pro 97.8 1.9E-05 6.4E-10 83.0 6.4 90 111-202 109-236 (379)
44 2e0a_A Pyruvate dehydrogenase 97.8 1.7E-05 6E-10 83.3 6.1 93 108-202 230-338 (394)
45 1y8o_A [pyruvate dehydrogenase 97.8 1.7E-05 6E-10 84.1 6.0 92 109-202 254-362 (419)
46 3d36_A Sporulation kinase B; G 97.8 2.6E-05 8.7E-10 74.3 6.1 88 108-202 123-213 (244)
47 1gkz_A [3-methyl-2-oxobutanoat 97.8 1.4E-05 4.7E-10 83.7 4.3 93 108-202 238-361 (388)
48 3sl2_A Sensor histidine kinase 97.7 1.4E-05 4.6E-10 73.6 3.7 93 109-202 44-140 (177)
49 3jz3_A Sensor protein QSEC; he 97.7 1E-05 3.4E-10 76.1 2.2 87 109-204 118-207 (222)
50 3a0r_A Sensor protein; four he 97.6 2.3E-05 7.7E-10 78.8 3.6 89 108-201 244-333 (349)
51 1th8_A Anti-sigma F factor; SP 97.6 7E-05 2.4E-09 66.8 5.8 86 109-202 40-127 (145)
52 3ehg_A Sensor kinase (YOCF pro 97.5 5.1E-05 1.7E-09 66.5 3.6 72 109-201 41-115 (128)
53 3ehh_A Sensor kinase (YOCF pro 97.3 0.00017 5.9E-09 67.9 5.0 74 110-201 132-205 (218)
54 3zxo_A Redox sensor histidine 97.3 0.00019 6.6E-09 62.1 4.3 70 108-202 43-115 (129)
55 3zxq_A Hypoxia sensor histidin 97.1 0.00025 8.5E-09 61.1 3.6 69 109-202 40-111 (124)
56 4gfh_A DNA topoisomerase 2; to 97.1 0.00048 1.7E-08 82.3 6.3 88 109-201 60-162 (1177)
57 4fpp_A Phosphotransferase; fou 96.8 0.00064 2.2E-08 66.6 3.7 85 109-201 147-236 (247)
58 1ixm_A SPO0B, protein (sporula 94.6 0.018 6.1E-07 55.3 3.3 58 112-169 109-171 (192)
59 3ke6_A Protein RV1364C/MT1410; 90.0 0.24 8.1E-06 52.1 4.8 73 110-200 299-373 (399)
60 1usu_A Heat shock protein HSP8 43.0 60 0.002 32.4 7.8 63 411-476 68-131 (260)
61 1y6z_A Heat shock protein, put 36.2 68 0.0023 32.0 7.0 63 411-476 70-133 (263)
62 2gq0_A Chaperone protein HTPG; 33.6 99 0.0034 31.6 7.7 63 410-475 65-128 (303)
63 1hk7_A Heat shock protein HSP8 29.3 1.2E+02 0.0039 30.8 7.3 64 410-476 65-129 (288)
64 3pry_A Heat shock protein HSP 25.1 1.8E+02 0.0062 29.1 7.8 61 410-473 67-128 (268)
65 2cge_A ATP-dependent molecular 24.8 1.3E+02 0.0044 31.9 7.0 63 410-475 65-128 (405)
No 1
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.73 E-value=7.4e-17 Score=178.35 Aligned_cols=96 Identities=28% Similarity=0.381 Sum_probs=73.6
Q ss_pred ccccccccccHHHHHHHhhccchhhhh-------------CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh-
Q 008256 99 LHSNATSHKWAFGAIAELLDNAVDEVQ-------------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM- 164 (572)
Q Consensus 99 LhSnatsh~~~f~AIaELIDNAiDA~~-------------~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~- 164 (572)
||||.. .+|+|||+||+||.. ..+..+.|++..+. +...|+|.|||+||+++++..++
T Consensus 24 lYsn~~------ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~~~I~I~DnGiGMt~edl~~~l~ 95 (559)
T 1y4s_A 24 LYSNKE------IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLTISDNGVGMTRDEVIDHLG 95 (559)
T ss_dssp TGGGTT------HHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEET--TTTEEEEEECSSCCCHHHHHHHHS
T ss_pred cCCChH------HHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeC--CCcEEEEEECCCCCCHHHHHHHHh
Confidence 677754 699999999999962 12444455554432 34689999999999999998765
Q ss_pred hcCccccc------------CCCCcccccccccccccccCCEEEEEeeeCC
Q 008256 165 SLGYSTKK------------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 165 ~~G~S~K~------------~~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
++|+|.+. +...||+||+||++ +|.++.+++|.|++.+
T Consensus 96 tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS-~f~VadkV~V~Sr~~~ 145 (559)
T 1y4s_A 96 TIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYS-AFIVADKVTVRTRAAG 145 (559)
T ss_dssp CCSCCCCCCTTCC--------CCCCSSCCCSGGG-HHHHEEEEEEEEECSS
T ss_pred hhcccccHHHHHHhhccccccccccCCCCcchhh-hhhccCeEEEEEcCCC
Confidence 58888643 25689999999986 5668999999999875
No 2
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.70 E-value=7e-17 Score=168.37 Aligned_cols=89 Identities=21% Similarity=0.349 Sum_probs=70.6
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-cCcccccC-------CCCcc
Q 008256 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKA-------NKTIG 178 (572)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~~-------~~~iG 178 (572)
..|..+|.|||+||+|| +|+.|.|.+.. ++...|+|.|||.||+++++..+|. +++| |.. ...+|
T Consensus 23 ~~~~~~v~ELi~NaidA---~a~~I~I~i~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts-K~~~~~d~~~~~~~G 95 (333)
T 1b63_A 23 ERPASVVKELVENSLDA---GATRIDIDIER---GGAKLIRIRDNGCGIKKDELALALARHATS-KIASLDDLEAIISLG 95 (333)
T ss_dssp SSHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGHHHHHSTTCCS-SCCSHHHHHTCCSSC
T ss_pred hCHHHHHHHHHHHHHHC---CCCeEEEEEEe---CCceEEEEEEcCCCcCHHHHHHhhhccccc-CccccchhhhccccC
Confidence 35678999999999999 89999998864 2456899999999999999999885 6655 432 25789
Q ss_pred cccccccccccccCCEEEEEeeeCCC
Q 008256 179 QYGNGFKTSTMRLGADVIVFSRATHE 204 (572)
Q Consensus 179 ~fGiG~KsAs~~lg~~v~V~Sr~~~~ 204 (572)
.+|+|+.++ ..++ +++|.|++.++
T Consensus 96 ~~G~gl~si-~~vs-~l~v~s~~~~~ 119 (333)
T 1b63_A 96 FRGEALASI-SSVS-RLTLTSRTAEQ 119 (333)
T ss_dssp CSSCHHHHH-HTTS-EEEEEEECTTC
T ss_pred ccccchhhh-hcCC-cEEEEEecCCC
Confidence 999998543 3344 89999998653
No 3
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.69 E-value=8.7e-17 Score=179.78 Aligned_cols=96 Identities=28% Similarity=0.381 Sum_probs=72.0
Q ss_pred ccccccccccHHHHHHHhhccchhhhh-------------CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh-
Q 008256 99 LHSNATSHKWAFGAIAELLDNAVDEVQ-------------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM- 164 (572)
Q Consensus 99 LhSnatsh~~~f~AIaELIDNAiDA~~-------------~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~- 164 (572)
||||.. .+|+|||+||+||.. ..++.+.|++..+. +...|+|.|||+||+.+++..++
T Consensus 24 lYsn~~------ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~--~~~~I~I~DnGiGMt~edl~~~l~ 95 (624)
T 2ioq_A 24 LYSNKE------IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLTISDNGVGMTRDEVIDHLG 95 (624)
T ss_dssp HSSCTT------HHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHHHHH
T ss_pred cCCChH------HHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeC--CCcEEEEEECCCCCCHHHHHHHHH
Confidence 777764 699999999999962 12444455555432 34789999999999999998765
Q ss_pred hcCccccc------------CCCCcccccccccccccccCCEEEEEeeeCC
Q 008256 165 SLGYSTKK------------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 165 ~~G~S~K~------------~~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
++|+|.+. +...||+||+||++ +|.++++++|.||+.+
T Consensus 96 tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS-~f~VadkV~V~Sr~~~ 145 (624)
T 2ioq_A 96 TIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYS-AFIVADKVTVRTRAAG 145 (624)
T ss_dssp HHCC---------------CCTTHHHHHHHHHHH-HHHHEEEEEEEEECTT
T ss_pred hhcccccHHHHHHhcccccccccccCCCCccHHH-HHhcCCeEEEEECCCC
Confidence 58888642 25679999999986 5558999999999875
No 4
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.67 E-value=3.9e-16 Score=175.32 Aligned_cols=96 Identities=29% Similarity=0.376 Sum_probs=63.4
Q ss_pred ccccccccccHHHHHHHhhccchhhhh-------------CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh-
Q 008256 99 LHSNATSHKWAFGAIAELLDNAVDEVQ-------------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM- 164 (572)
Q Consensus 99 LhSnatsh~~~f~AIaELIDNAiDA~~-------------~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~- 164 (572)
||||.. .+|+|||.||+||.. ..+..+.|.+..+. +...|+|.|||+||+.+++..+|
T Consensus 42 LYsn~e------ifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~--~~~~I~I~DnGiGMt~edl~~~l~ 113 (666)
T 2o1u_A 42 LYKNKE------IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDK--EKNLLHVTDTGVGMTREELVKNLG 113 (666)
T ss_dssp TSSSCT------THHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHHHTT
T ss_pred ccCCch------HHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeC--CCCEEEEEECCCCCCHHHHHHHHh
Confidence 788765 589999999999962 12544556655432 34789999999999999998766
Q ss_pred hcCccccc---------------CCCCcccccccccccccccCCEEEEEeeeCC
Q 008256 165 SLGYSTKK---------------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 165 ~~G~S~K~---------------~~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
++|+|.+. +...||+||+||+++ |.++.+++|.||+.+
T Consensus 114 tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySa-f~vAdkV~V~Sr~~~ 166 (666)
T 2o1u_A 114 TIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSA-FLVADKVIVTSKHNN 166 (666)
T ss_dssp C-------------------------------CTTGGG-GGTEEEEEEEEECTT
T ss_pred hhcccccHHHHHHhhhcccccccchhhccCCCcHHHhH-HHhcCEEEEEEeeCC
Confidence 47777332 245799999999866 679999999999875
No 5
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=159.42 Aligned_cols=90 Identities=19% Similarity=0.252 Sum_probs=69.8
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC-------CCCccc
Q 008256 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------NKTIGQ 179 (572)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-------~~~iG~ 179 (572)
..|..+|.|||+||+|| +|+.|.|.+.. ++...|+|.|||+||+++++..++...+++|.. ...+|.
T Consensus 27 ~~~~~vv~eLv~NAidA---~a~~I~I~i~~---~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s~Gf 100 (348)
T 3na3_A 27 QRPANAIKEMIENCLDA---KSTSIQVIVKE---GGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGF 100 (348)
T ss_dssp CSHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC---------CC
T ss_pred cCHHHHHHHHHHHHHHc---CCCEEEEEEEe---CCEEEEEEEECCcCcChHHhhhhhccccccccCcchhhhccccCCc
Confidence 45668999999999999 89999998853 345679999999999999999998866555543 256899
Q ss_pred ccccccccccccCCEEEEEeeeCCC
Q 008256 180 YGNGFKTSTMRLGADVIVFSRATHE 204 (572)
Q Consensus 180 fGiG~KsAs~~lg~~v~V~Sr~~~~ 204 (572)
+|.|+.+ ...++ +++|.||+.++
T Consensus 101 rGeaL~S-i~avs-~l~v~sr~~~~ 123 (348)
T 3na3_A 101 RGEALAS-ISHVA-HVTITTKTADG 123 (348)
T ss_dssp TTCHHHH-HHHSS-EEEEEEECTTC
T ss_pred CChHHHH-hhccc-EEEEEEEECCC
Confidence 9999843 44465 89999999754
No 6
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.2e-14 Score=153.61 Aligned_cols=89 Identities=22% Similarity=0.311 Sum_probs=68.8
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC-------CCCccc
Q 008256 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------NKTIGQ 179 (572)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-------~~~iG~ 179 (572)
..|..+|.||||||+|| +|+.|.|.+. .++...|+|.|||+||+++++..++...+++|.. ...+|.
T Consensus 24 ~~~~~vv~eLv~NaiDA---~a~~I~I~i~---~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t~Gf 97 (367)
T 3h4l_A 24 TDLTTAVKELVDNSIDA---NANQIEIIFK---DYGLESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGF 97 (367)
T ss_dssp CSHHHHHHHHHHHHHHT---TCSEEEEEEE---TTTTSEEEEEECSCCCCGGGTTTTTCCEEC---------CCCCEEEE
T ss_pred cCHHHHHHHHHHHHHHC---CCCEEEEEEE---eCCEEEEEEEECCCCcChhHhccceeccccCcCCchhhhhhhhccCc
Confidence 44567999999999999 8999998884 2356789999999999999999988755544442 246788
Q ss_pred ccccccccccccCCEEEEEeeeCC
Q 008256 180 YGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 180 fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
.|.|+. +.+.++ +++|.||+.+
T Consensus 98 rGeaL~-Si~avS-~l~V~sr~~~ 119 (367)
T 3h4l_A 98 RGEALS-SLCGIA-KLSVITTTSP 119 (367)
T ss_dssp TTHHHH-HHHHSS-EEEEEEESST
T ss_pred cchHHH-HhhccC-EEEEEEEECC
Confidence 899985 345566 7999999865
No 7
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.58 E-value=6.3e-15 Score=155.59 Aligned_cols=90 Identities=21% Similarity=0.258 Sum_probs=66.7
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-cCcccccC------CCCccc
Q 008256 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKA------NKTIGQ 179 (572)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~~------~~~iG~ 179 (572)
..+..+|.|||+||+|| +++.|.|.+.. ++...|+|.|||+||+++++..++. +.+|+... ...+|.
T Consensus 33 ~~~~~vl~eLv~NAiDA---~a~~I~I~i~~---~~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~~dl~~i~s~G~ 106 (365)
T 1h7s_A 33 LSLSTAVKELVENSLDA---GATNIDLKLKD---YGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGF 106 (365)
T ss_dssp CCHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGSGGGGC----------CCTTCSEEESS
T ss_pred hhHHHHHHHHHHHHHHC---CCCEEEEEEEe---CCcEEEEEEECCCCcCHHHHHHHhhhccccccccccchhcccccCC
Confidence 45668999999999999 89999888864 2456899999999999999999876 55543221 134788
Q ss_pred ccccccccccccCCEEEEEeeeCCC
Q 008256 180 YGNGFKTSTMRLGADVIVFSRATHE 204 (572)
Q Consensus 180 fGiG~KsAs~~lg~~v~V~Sr~~~~ 204 (572)
+|+|+.+ ...++ +++|.|++.++
T Consensus 107 rG~gl~s-i~~vs-~v~v~t~~~~~ 129 (365)
T 1h7s_A 107 RGEALSS-LCALS-DVTISTCHASA 129 (365)
T ss_dssp SSSHHHH-HHHHS-EEEEEEECTTC
T ss_pred CCchhhh-hhhhc-cEEEEEccCCC
Confidence 8999854 34466 99999998753
No 8
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.54 E-value=3e-13 Score=152.19 Aligned_cols=97 Identities=25% Similarity=0.293 Sum_probs=74.6
Q ss_pred cccccccccccHHHHHHHhhccchhhhh-------------CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh
Q 008256 98 FLHSNATSHKWAFGAIAELLDNAVDEVQ-------------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM 164 (572)
Q Consensus 98 fLhSnatsh~~~f~AIaELIDNAiDA~~-------------~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~ 164 (572)
.||||.. .+|+|||.||+||.. ..+..+.|.|..+. +...|+|.|||+||+.+++.++|
T Consensus 22 sLYsnke------ifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~--~~~~I~I~DnGiGMt~edl~~~l 93 (677)
T 2cg9_A 22 TVYSNKE------IFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKP--EQKVLEIRDSGIGMTKAELINNL 93 (677)
T ss_dssp SCCSCTT------HHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEG--GGTEEEEEECSCCCCHHHHHGGG
T ss_pred hCCCCch------HHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeC--CCCEEEEEECCCCCCHHHHHHHH
Confidence 4788865 589999999999973 12334455554432 34689999999999999998866
Q ss_pred -hcCccccc----------CCCCcccccccccccccccCCEEEEEeeeCC
Q 008256 165 -SLGYSTKK----------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 165 -~~G~S~K~----------~~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
++|+|.+. +...||+||+||++| |.++.+++|.||+.+
T Consensus 94 ~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySa-f~vadkV~V~Sk~~~ 142 (677)
T 2cg9_A 94 GTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSL-FLVADRVQVISKSND 142 (677)
T ss_dssp SSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGG-GGTEEEEEEEEECTT
T ss_pred HhHhccccHHHHHhhhcccchhhcCCCCchhHHH-hhcCcEEEEEEccCC
Confidence 48887431 246899999999866 669999999999975
No 9
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.42 E-value=8.3e-14 Score=137.08 Aligned_cols=97 Identities=24% Similarity=0.285 Sum_probs=74.4
Q ss_pred cccccccccccHHHHHHHhhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh
Q 008256 98 FLHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM 164 (572)
Q Consensus 98 fLhSnatsh~~~f~AIaELIDNAiDA~~~-------------~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~ 164 (572)
.||++.. .+|+|||+||+||... ....+.|.+..+. +...|.|.|||+||+++++..+|
T Consensus 22 ~lys~~~------~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~--~~~~i~I~DnG~GMs~edl~~~l 93 (220)
T 2wer_A 22 TVYSNKE------IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKP--EQKVLEIRDSGIGMTKAELINNL 93 (220)
T ss_dssp HCCSSTT------HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEG--GGTEEEEEECSCCCCHHHHHHHT
T ss_pred hccCCch------HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECC--CCCEEEEEEcCCCCCHHHHHHHH
Confidence 3677764 6999999999999641 1244556665432 45689999999999999998766
Q ss_pred -hcCccccc----------CCCCcccccccccccccccCCEEEEEeeeCC
Q 008256 165 -SLGYSTKK----------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 165 -~~G~S~K~----------~~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
++|+|.+. +...+|+||+||+++ +.++.+++|.|++.+
T Consensus 94 ~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~-~~~~~~v~v~S~~~~ 142 (220)
T 2wer_A 94 GTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSL-FLVADRVQVISKSND 142 (220)
T ss_dssp TTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTT
T ss_pred HhHhcccchhHHHHhhccCCcccCCccchhHHHh-hhcCCeeEEEEecCC
Confidence 58887532 356899999999755 779999999999864
No 10
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.42 E-value=1.9e-13 Score=139.18 Aligned_cols=97 Identities=23% Similarity=0.337 Sum_probs=74.9
Q ss_pred cccccccccccHHHHHHHhhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh
Q 008256 98 FLHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM 164 (572)
Q Consensus 98 fLhSnatsh~~~f~AIaELIDNAiDA~~~-------------~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~ 164 (572)
-||||.. .+|+|||.||.||+.. ....+.|.|..+. ....|+|.|||.||+++++...|
T Consensus 42 ~lYsn~~------ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~--~~~tLtI~DNGiGMt~edL~~~L 113 (281)
T 3peh_A 42 SLYTQKE------VFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANK--EKNILSITDTGIGMTKVDLINNL 113 (281)
T ss_dssp HHTTCGG------GHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHHHH
T ss_pred hccCChH------HHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcC--CCcEEEEEeCCCCCCHHHHHHHH
Confidence 3788764 5899999999999731 1234566665533 45789999999999999998766
Q ss_pred -hcCcccc-----------cCCCCcccccccccccccccCCEEEEEeeeCC
Q 008256 165 -SLGYSTK-----------KANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 165 -~~G~S~K-----------~~~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
++|+|.+ .+...||+||+||++| |.+|.+++|.|+..+
T Consensus 114 gtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySa-f~vadkV~V~Sk~~~ 163 (281)
T 3peh_A 114 GTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSA-FLVADKVIVYTKNND 163 (281)
T ss_dssp HHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGG-GGTEEEEEEEEECTT
T ss_pred HHHHhHhhhhHHHhhhccccccccccccCccchhh-ccccCEEEEEEecCC
Confidence 4777642 2357899999999876 569999999999875
No 11
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.41 E-value=9.7e-14 Score=137.81 Aligned_cols=96 Identities=23% Similarity=0.371 Sum_probs=74.5
Q ss_pred ccccccccccHHHHHHHhhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh-
Q 008256 99 LHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM- 164 (572)
Q Consensus 99 LhSnatsh~~~f~AIaELIDNAiDA~~~-------------~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~- 164 (572)
|||+.. .+|+|||+||+||... ....+.|.+..+. +...|.|.|||.||+++++..+|
T Consensus 29 lYs~~~------~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~--~~~~i~V~DnG~GMs~edl~~~l~ 100 (228)
T 3t0h_A 29 FYSNKE------IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNK--QDRTLTIVDTGIGMTKADLINNLG 100 (228)
T ss_dssp CCSCTT------HHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHTGGG
T ss_pred hcCCcH------HHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeC--CeeEEEEEeCCCCCCHHHHHHHHH
Confidence 777754 6899999999999631 1124566665432 56789999999999999998766
Q ss_pred hcCccccc----------CCCCcccccccccccccccCCEEEEEeeeCC
Q 008256 165 SLGYSTKK----------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 165 ~~G~S~K~----------~~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
++++|.+. +...+|+||+||+++ |.++.+++|.||+.+
T Consensus 101 ~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~-~~vad~v~V~Sr~~~ 148 (228)
T 3t0h_A 101 TIAKSGTKAFMEALQAGADISMIGQFGVGFYSA-YLVAEKVTVITKHND 148 (228)
T ss_dssp SCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTT
T ss_pred hhccccchhhhhhhcccCCcccCCCCChhHHHH-hccCCEEEEEEecCC
Confidence 58877542 357899999999876 559999999999864
No 12
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.41 E-value=9.2e-14 Score=138.34 Aligned_cols=92 Identities=27% Similarity=0.372 Sum_probs=71.2
Q ss_pred HHHHHHhhccchhhhh-------------CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh-hcCccccc---
Q 008256 110 FGAIAELLDNAVDEVQ-------------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM-SLGYSTKK--- 172 (572)
Q Consensus 110 f~AIaELIDNAiDA~~-------------~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~-~~G~S~K~--- 172 (572)
..+|.|||+||+||.. ..++.+.|.+..+. +...|+|.|||+||+++++..+| ++|+|.+.
T Consensus 49 ~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~--~~~~i~I~DnG~GMs~edl~~~~~~ia~S~~~~f~ 126 (235)
T 2ior_A 49 EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFL 126 (235)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEET--TTTEEEEEECSSCCCHHHHHHHHTTCCCTTHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcC--CceEEEEEECCCCCCHHHHHHHHHHHccccccchh
Confidence 3699999999999963 12445556665432 34579999999999999998765 68888642
Q ss_pred ---------CCCCcccccccccccccccCCEEEEEeeeCCC
Q 008256 173 ---------ANKTIGQYGNGFKTSTMRLGADVIVFSRATHE 204 (572)
Q Consensus 173 ---------~~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~~ 204 (572)
+...+|+||+||+++ |.++++++|.|+..++
T Consensus 127 ~~l~~~~~~~~~~iG~fGiG~~S~-~~~~~~v~V~Sr~~~~ 166 (235)
T 2ior_A 127 ESLGSDQAKDSQLIGQFGVGFYSA-FIVADKVTVRTRAAGE 166 (235)
T ss_dssp HHCCSCHHHHHHHHTTCCCCGGGG-GGTEEEEEEEEECTTS
T ss_pred hhhccccccccccCCCCChhHHHH-HhCcCeEEEEEecCCC
Confidence 145789999999865 7799999999998753
No 13
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.40 E-value=1.7e-13 Score=136.88 Aligned_cols=105 Identities=24% Similarity=0.346 Sum_probs=78.5
Q ss_pred CcccceecccccccccccccccHHHHHHHhhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCC
Q 008256 87 GSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGG 153 (572)
Q Consensus 87 ~~~~~~~v~~~fLhSnatsh~~~f~AIaELIDNAiDA~~~-------------~A~~V~I~i~~~~~~~~~~I~I~DNG~ 153 (572)
.+|+.+.-+ ||||.. .+|+|||.||.||... ....+.|.+..+. ....|+|.|||.
T Consensus 27 ~ll~ll~~~---lYs~~~------ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~~~L~I~DnGi 95 (239)
T 3nmq_A 27 QLMSLIINT---FYSNKE------IFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNP--QERTLTLVDTGI 95 (239)
T ss_dssp HHHHHHHHS---CCCCTT------HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEET--TTTEEEEEECSC
T ss_pred HHHHHHHHh---ccCCcH------HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeC--CccEEEEEeCCC
Confidence 455555433 788865 5899999999999731 1124566665533 467899999999
Q ss_pred CCCHHHHHHhh-hcCccccc----------CCCCcccccccccccccccCCEEEEEeeeCC
Q 008256 154 GMDPESLRKCM-SLGYSTKK----------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 154 GMs~e~l~~~~-~~G~S~K~----------~~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
||+++++.+.+ ++++|.++ +...||+||+||+++ |.++.+++|.||+.+
T Consensus 96 GMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySa-f~vadkv~V~Sk~~~ 155 (239)
T 3nmq_A 96 GMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSA-YLVAEKVVVITKHND 155 (239)
T ss_dssp CCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTT
T ss_pred CCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccc-cccCCEEEEEEeeCC
Confidence 99999997654 57776432 357899999999876 669999999999864
No 14
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.39 E-value=1.2e-13 Score=139.23 Aligned_cols=105 Identities=21% Similarity=0.315 Sum_probs=78.8
Q ss_pred CcccceecccccccccccccccHHHHHHHhhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCC
Q 008256 87 GSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGG 153 (572)
Q Consensus 87 ~~~~~~~v~~~fLhSnatsh~~~f~AIaELIDNAiDA~~~-------------~A~~V~I~i~~~~~~~~~~I~I~DNG~ 153 (572)
.+++.+.=+ |||+.. .+|+|||+||+||... ....+.|++..+. +...|+|.|||.
T Consensus 48 ~Ll~ll~~~---lYs~~~------iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~~~I~I~DnG~ 116 (256)
T 3o0i_A 48 QLMSLIINT---FYSNKE------IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNK--QDRTLTIVDTGI 116 (256)
T ss_dssp HHHHHHHHS---CCSCTT------HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEET--TTTEEEEEECSC
T ss_pred HHHHHHHHh---ccCCcH------HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcC--CceEEEEecCCC
Confidence 444444433 788765 6899999999999631 1124566665532 567899999999
Q ss_pred CCCHHHHHHhh-hcCccccc----------CCCCcccccccccccccccCCEEEEEeeeCC
Q 008256 154 GMDPESLRKCM-SLGYSTKK----------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 154 GMs~e~l~~~~-~~G~S~K~----------~~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
||+++++..+| ++++|.+. +...+|+||+||+++ |.++++++|.||+.+
T Consensus 117 GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~-f~Vadkv~V~Sr~~~ 176 (256)
T 3o0i_A 117 GMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSA-YLVAEKVTVITKHND 176 (256)
T ss_dssp CCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTT
T ss_pred CcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHh-hccCCeEEEEEcCCC
Confidence 99999998765 47776542 357899999999876 559999999999864
No 15
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.39 E-value=1.4e-13 Score=139.32 Aligned_cols=96 Identities=23% Similarity=0.371 Sum_probs=74.6
Q ss_pred ccccccccccHHHHHHHhhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh-
Q 008256 99 LHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM- 164 (572)
Q Consensus 99 LhSnatsh~~~f~AIaELIDNAiDA~~~-------------~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~- 164 (572)
||++.. .+|+|||+||+||... ..+.+.|.+..+. +...|+|.|||+||+++++..+|
T Consensus 65 lys~~~------~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~--~~~~I~I~DnG~GMs~edL~~~l~ 136 (264)
T 1yc1_A 65 FYSNKE------IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNK--QDRTLTIVDTGIGMTKADLINNLG 136 (264)
T ss_dssp CCSCTT------HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHHHHH
T ss_pred ccCCHH------HHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECC--CeeEEEEEECCcCCCHHHHHHHHH
Confidence 566543 6999999999999631 1256777776532 45789999999999999997765
Q ss_pred hcCccccc----------CCCCcccccccccccccccCCEEEEEeeeCC
Q 008256 165 SLGYSTKK----------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 165 ~~G~S~K~----------~~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
++|+|.+. +...+|+||+||+++ +.++++++|.|+..+
T Consensus 137 ~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~-f~va~~v~V~Sr~~~ 184 (264)
T 1yc1_A 137 TIAKSGTKAFMEALQAGADISMIGQFGVGFYSA-YLVAEKVTVITKHND 184 (264)
T ss_dssp SCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGH-HHHEEEEEEEEECTT
T ss_pred hhccccchhhhhhhccccchhhcCCCCCCcccc-ccCCCEEEEEEecCC
Confidence 58887643 256899999999866 559999999999864
No 16
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.38 E-value=6.6e-13 Score=133.47 Aligned_cols=95 Identities=24% Similarity=0.356 Sum_probs=73.1
Q ss_pred ccccccccccccHHHHHHHhhccchhhhhC-------------------------------------------------C
Q 008256 97 KFLHSNATSHKWAFGAIAELLDNAVDEVQN-------------------------------------------------G 127 (572)
Q Consensus 97 ~fLhSnatsh~~~f~AIaELIDNAiDA~~~-------------------------------------------------~ 127 (572)
+.||||.. ..|+|||.||.||+.. .
T Consensus 42 ~slYs~ke------iFlRELISNasDA~dK~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 115 (272)
T 3ied_A 42 NSLYTDKD------VFLRELISNASDACDKKRIILENNKLIKDAEVVTNEEIKNETEKEKTENVNESTDKKENVEEEKND 115 (272)
T ss_dssp HCTTCCTT------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------------------CG
T ss_pred hhcCCCHH------HHHHHHHHhhHHHHHHHHHhccChhhhhccccccccccccccccccccccccccccccccccccCC
Confidence 34888865 4799999999999831 0
Q ss_pred CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh-hcCcccc-----------cCCCCcccccccccccccccCCEE
Q 008256 128 ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM-SLGYSTK-----------KANKTIGQYGNGFKTSTMRLGADV 195 (572)
Q Consensus 128 A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~-~~G~S~K-----------~~~~~iG~fGiG~KsAs~~lg~~v 195 (572)
...+.|.|..+. ....|+|.|||.||+++++.+.| ++++|.+ .+...||+||+||++| |.++.++
T Consensus 116 ~~~l~I~I~~Dk--~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySa-FmVAdkV 192 (272)
T 3ied_A 116 IKKLIIKIKPDK--EKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSS-FLVSNRV 192 (272)
T ss_dssp GGGCCEEEEEET--TTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGG-GGTEEEE
T ss_pred CCCcEEEEEEeC--CCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceehee-eccCCEE
Confidence 122456666543 45689999999999999999866 5777742 2357899999999975 5699999
Q ss_pred EEEee
Q 008256 196 IVFSR 200 (572)
Q Consensus 196 ~V~Sr 200 (572)
+|.||
T Consensus 193 ~V~Sk 197 (272)
T 3ied_A 193 EVYTK 197 (272)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99999
No 17
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.38 E-value=1.5e-13 Score=136.88 Aligned_cols=96 Identities=29% Similarity=0.378 Sum_probs=68.7
Q ss_pred ccccccccccHHHHHHHhhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh-
Q 008256 99 LHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM- 164 (572)
Q Consensus 99 LhSnatsh~~~f~AIaELIDNAiDA~~~-------------~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~- 164 (572)
||++.. .+|+|||+||+||... ....+.|.+..+. +...|.|.|||.||+++++.++|
T Consensus 29 lys~~~------~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~--~~~~i~I~DnG~GMt~edl~~~l~ 100 (236)
T 2gqp_A 29 LYKNKE------IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDK--EKNLLHVTDTGVGMTREELVKNLG 100 (236)
T ss_dssp TTTCTT------HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHHHHH
T ss_pred hcCCch------HHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcC--CCCEEEEEECCcCCCHHHHHHHHh
Confidence 666643 6999999999999630 1233555555432 34689999999999999998766
Q ss_pred hcCccccc---------------CCCCcccccccccccccccCCEEEEEeeeCC
Q 008256 165 SLGYSTKK---------------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 165 ~~G~S~K~---------------~~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
++|+|.+. +...+|+||+||++ +|.++++++|.|+..+
T Consensus 101 ~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S-~f~va~~v~V~Sr~~~ 153 (236)
T 2gqp_A 101 TIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYS-AFLVADKVIVTSKHNN 153 (236)
T ss_dssp CC---------------------CHHHHHHTTCGGGG-GGGTEEEEEEEEECTT
T ss_pred hhcccccHhHHHHhhccccccccchhhcCCCCcchhh-HhhcCCEEEEEEeCCC
Confidence 58887432 13468999999985 5679999999999864
No 18
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.37 E-value=2.7e-13 Score=137.68 Aligned_cols=97 Identities=29% Similarity=0.362 Sum_probs=74.4
Q ss_pred cccccccccccHHHHHHHhhccchhhhh-------------CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh
Q 008256 98 FLHSNATSHKWAFGAIAELLDNAVDEVQ-------------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM 164 (572)
Q Consensus 98 fLhSnatsh~~~f~AIaELIDNAiDA~~-------------~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~ 164 (572)
.||||.. .+|+|||+||+||.. .....+.|.+..+. +...|+|.|||+||+.+++.+.|
T Consensus 24 ~lYsn~e------ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~--~~~~l~I~DnGiGMt~edl~~~l 95 (269)
T 1qy5_A 24 SLYKNKE------IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDK--EKNLLHVTDTGVGMTREELVKNL 95 (269)
T ss_dssp HHTTCTT------HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHHHH
T ss_pred hccCCch------HHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcC--CceEEEEEECCCCCCHHHHHHHh
Confidence 4777765 599999999999963 11244566665532 45789999999999999997765
Q ss_pred -hcCcccc---------------cCCCCcccccccccccccccCCEEEEEeeeCC
Q 008256 165 -SLGYSTK---------------KANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 165 -~~G~S~K---------------~~~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
++|+|.+ .+...||+||+||+++ |.++.+++|.|+..+
T Consensus 96 ~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySa-f~va~~v~V~Sk~~~ 149 (269)
T 1qy5_A 96 GTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSA-FLVADKVIVTSKHNN 149 (269)
T ss_dssp HSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGG-GGTEEEEEEEEECTT
T ss_pred hhhcccccHHHHHhhhhcccccccchhhcCCccccHHHH-hhccceEEEEEEecC
Confidence 5887732 2345789999999866 669999999999975
No 19
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.12 E-value=5e-10 Score=119.21 Aligned_cols=108 Identities=30% Similarity=0.304 Sum_probs=80.9
Q ss_pred CCcCcccceecccc-cccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHH--
Q 008256 84 PVQGSLEHARVHPK-FLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPES-- 159 (572)
Q Consensus 84 ~~~~~~~~~~v~~~-fLhSnatsh~~~f~AIaELIDNAiDA~~~~-A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~-- 159 (572)
+-...++|++.-|. |+-|... ..++.||||||+|+..++ |+.|.|.+.. + ..|+|.|||.||+.++
T Consensus 11 ~~L~gle~vr~RPgmYiGs~~~-----~~lv~ElvdNsiD~a~~g~a~~I~V~i~~---~--g~I~V~DnG~GIp~~~~~ 80 (390)
T 1s16_A 11 EVLTGLEPVRRRPGMYTDTTRP-----NHLGQEVIDNSVDEALAGHAKRVDVILHA---D--QSLEVIDDGRGMPVDIHP 80 (390)
T ss_dssp EECCTTHHHHHCGGGTSCTTST-----HHHHHHHHHHHHHHHHTTCCSEEEEEECT---T--SCEEEEECSSCCCCSBCT
T ss_pred EEcchhHHHhhCCceeecCCcH-----HHHHHHHHHHHHHHHhcCCCCEEEEEEec---C--CEEEEEECCCCcCccccc
Confidence 34667888888874 5455544 368999999999997766 8999998853 2 3899999999999988
Q ss_pred ------HHHhhh-cCcccccC----CCCcccccccccccccccCCEEEEEeeeC
Q 008256 160 ------LRKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (572)
Q Consensus 160 ------l~~~~~-~G~S~K~~----~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~ 202 (572)
++.+|. +-.+.|.+ ....|+.|+|++. .-.++..++|.|+..
T Consensus 81 ~~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~-vnalS~~l~v~~~r~ 133 (390)
T 1s16_A 81 EEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV-VNALSKRVEVNVRRD 133 (390)
T ss_dssp TTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHH-HHHTEEEEEEEEEET
T ss_pred ccCcchhhheeeeecccCCcCCCcccccCCccccchHH-HHHhhcccEEEEEEC
Confidence 666665 33344432 3478999999964 455788899999974
No 20
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.09 E-value=6.3e-10 Score=118.46 Aligned_cols=119 Identities=21% Similarity=0.250 Sum_probs=86.1
Q ss_pred ccCccCccccCCCcCcccceecccc-cccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEE
Q 008256 73 TYAANITIKSTPVQGSLEHARVHPK-FLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFID 150 (572)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~v~~~-fLhSnatsh~~~f~AIaELIDNAiDA~~~~-A~~V~I~i~~~~~~~~~~I~I~D 150 (572)
+|+. ...+-...++|++.-|. |+-|.... .-+..++.||||||+||..++ |+.|.|.+.. + ..|+|.|
T Consensus 3 ~y~~----~~i~~L~gle~vrkRPgmYiGst~~~-~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~---~--g~I~V~D 72 (391)
T 1ei1_A 3 SSDS----SSIKVLKGLDAVRKRPGMYIGDTDDG-TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---D--NSVSVQD 72 (391)
T ss_dssp CCSG----GGCEECCTTHHHHHCTHHHHCCSSSS-HHHHHHHHHHHHHHHHHHHTTCCCEEEEEECT---T--SCEEEEE
T ss_pred CCCH----HHCEECchhHHHHcCCCeEECCCCCC-cCHHHHHHHHHHhHHHHHhcCCCCEEEEEEeC---C--CEEEEEE
Confidence 4665 23334678888888874 44444331 256789999999999998777 9999888853 2 3899999
Q ss_pred CCCCCCHHH--------HHHhhh-cCcccccC----CCCcccccccccccccccCCEEEEEeeeC
Q 008256 151 DGGGMDPES--------LRKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (572)
Q Consensus 151 NG~GMs~e~--------l~~~~~-~G~S~K~~----~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~ 202 (572)
||+||+.++ ++-+|. +-.+.|.+ .-..|+.|+|+++ ...++..++|.|+..
T Consensus 73 nG~GIp~~~~~~~~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~-vnalS~~l~v~~~r~ 136 (391)
T 1ei1_A 73 DGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV-VNALSQKLELVIQRE 136 (391)
T ss_dssp CSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHH-HHHTEEEEEEEEEET
T ss_pred CCCCcccCcccccCcchHHHhheeccccCCcCCCcccccCCccccchHH-HHHhcCeEEEEEEeC
Confidence 999999987 445665 44444443 3477999999964 455788899999875
No 21
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.95 E-value=4.3e-10 Score=111.03 Aligned_cols=113 Identities=21% Similarity=0.233 Sum_probs=73.7
Q ss_pred CCcCcccceeccccc-ccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHH-
Q 008256 84 PVQGSLEHARVHPKF-LHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESL- 160 (572)
Q Consensus 84 ~~~~~~~~~~v~~~f-LhSnatsh~~~f~AIaELIDNAiDA~~~~-A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l- 160 (572)
+-...++|++..|.. +-|... ..-+..++.||||||+|+..++ |+.|.|.+.. + ..|+|.|||.||+.+..
T Consensus 11 ~~l~~le~vr~rPgmYiG~~~~-~~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~---~--g~i~V~DnGrGIp~~~~~ 84 (220)
T 4duh_A 11 KVLKGLDAVRKRPGMYIGDTDD-GTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---D--NSVSVQDDGRGIPTGIHP 84 (220)
T ss_dssp ----CHHHHHHSTHHHHCCSSS-SHHHHHHHHHHHHHHHHHHHHSCCCEEEEEECT---T--SCEEEEECSSCCCCSEET
T ss_pred EEechhHHHHhCCceEECCCCC-cccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeC---C--CcEEEEECCcCccccccc
Confidence 346778888888844 344332 2466789999999999997654 8888888743 2 37999999999999863
Q ss_pred -------HHhhh-cCcccccC----CCCcccccccccccccccCCEEEEEeeeCC
Q 008256 161 -------RKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 161 -------~~~~~-~G~S~K~~----~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
+-+|. +-.+.|.+ ....|+.|+|++ +...|+..++|.+++.+
T Consensus 85 ~~~~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~s-vvNAlS~~l~v~v~r~g 138 (220)
T 4duh_A 85 EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS-VVNALSQKLELVIQREG 138 (220)
T ss_dssp TTTEEHHHHHHHSTTCSSCCCTTC--------CCCHH-HHHHTEEEEEEEEEETT
T ss_pred ccCcchhhheeeecccCCCcCCCccccccCccceecc-hhcccccceEEEEEECC
Confidence 34453 33333433 467899999996 45668889999998853
No 22
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.90 E-value=8e-09 Score=109.92 Aligned_cols=110 Identities=26% Similarity=0.268 Sum_probs=78.2
Q ss_pred CcCcccceecccc-cccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHH
Q 008256 85 VQGSLEHARVHPK-FLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRK 162 (572)
Q Consensus 85 ~~~~~~~~~v~~~-fLhSnatsh~~~f~AIaELIDNAiDA~~~~-A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~ 162 (572)
-...+++++..|. |+-|... .-....|.|||+||+|+...+ ++.|.|.+.. + ..|+|.|||.||+.+++.+
T Consensus 10 ~l~~le~vr~rpgmyiGs~~~--~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~---~--~~i~V~DnG~GIp~~~~~~ 82 (390)
T 1kij_A 10 VLKGLEGVRHRPAMYIGGTGV--EGYHHLFKEILDNAVDEALAGYATEILVRLNE---D--GSLTVEDNGRGIPVDLMPE 82 (390)
T ss_dssp ECCTTHHHHHCTHHHHSCSSH--HHHHHHHHHHHHHHHHHHHTTSCCEEEEEECT---T--SCEEEEECSSCCCCSEETT
T ss_pred EcchhHHHhcCCCcEEccCCc--chHHHHHHHHHHHHHHHhhhCCCCEEEEEEEc---C--CEEEEEEcCCCCCHHHhhh
Confidence 3567888888774 4544432 344568999999999996443 7788887743 1 3899999999999998765
Q ss_pred --------hhh-cCcccccC----CCCcccccccccccccccCCEEEEEeeeC
Q 008256 163 --------CMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (572)
Q Consensus 163 --------~~~-~G~S~K~~----~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~ 202 (572)
+|. +-...|.+ ....|..|+|++. ...++..+.|.|+..
T Consensus 83 ~~~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~-v~als~~~~v~t~~~ 134 (390)
T 1kij_A 83 EGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASV-VNALSEWTVVEVFRE 134 (390)
T ss_dssp TTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHH-HHHTEEEEEEEEEET
T ss_pred ccccchhhheeeeeecccccCccccccCCCCCcceee-ecccccceEEEEecC
Confidence 664 33333321 2356899999964 456888899999974
No 23
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.89 E-value=1.2e-08 Score=107.76 Aligned_cols=105 Identities=15% Similarity=0.088 Sum_probs=70.5
Q ss_pred Ccccceeccc-ccccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh
Q 008256 87 GSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM 164 (572)
Q Consensus 87 ~~~~~~~v~~-~fLhSnatsh~~~f~AIaELIDNAiDA~~~~-A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~ 164 (572)
+.+|+++.-| +|+-|.. ..-|..++.||||||+||..++ |+.|.|.+.. + ..|+|.|||+||+. ++.-
T Consensus 10 ~~lE~vrkRPgmYiGs~~--~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~---~--g~I~V~DnGrGIp~-e~v~-- 79 (369)
T 3cwv_A 10 GIVENVRKRPGMYCGDVG--EYGLHHLVYFLLDVAYEEARRGECRDVVLEVGG---D--GSIALFCTSRTVTA-ENLV-- 79 (369)
T ss_dssp CHHHHHHHSTHHHHSCSS--HHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECT---T--SCEEEEEEESSCCH-HHHH--
T ss_pred cHhHHHHhCCceEEcCCC--CchHHHHHHHHHhhhHhHHhhCCCCEEEEEEeC---C--CEEEEEECCCCcCH-hHee--
Confidence 3456666655 3444433 3567789999999999987664 9999998853 2 28999999999999 3332
Q ss_pred hcCcccccCC----CCcccccccccccccccCCEEEEEeeeCC
Q 008256 165 SLGYSTKKAN----KTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 165 ~~G~S~K~~~----~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
.+-.++|.+. ..++.-| |++ +.-.++..++|.|++.+
T Consensus 80 ~lhagsKf~~~~~~~~y~vsG-Gls-~vnalSs~l~v~t~r~g 120 (369)
T 3cwv_A 80 RVATGAGFLGRPPGDGWGWDS-MLV-VSLALSSRYQVDIWADG 120 (369)
T ss_dssp HHHTTTTGGGSSCCCSTTTTS-SHH-HHHHTEEEEEEEEEETT
T ss_pred eeecCCCcCCCcccccccccC-HHH-HHHHhhceEEEEEEECC
Confidence 3222233332 3444556 764 45567889999999753
No 24
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.82 E-value=1.7e-09 Score=105.28 Aligned_cols=88 Identities=31% Similarity=0.281 Sum_probs=56.1
Q ss_pred HHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHH--------HHHhhh-cCcccccC----CC
Q 008256 110 FGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPES--------LRKCMS-LGYSTKKA----NK 175 (572)
Q Consensus 110 f~AIaELIDNAiDA~~~~-A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~--------l~~~~~-~G~S~K~~----~~ 175 (572)
..+|.|||+||+||..++ |+.|.|.+.. + ..|+|.|||.||+.++ ++.+|. +-.++|.+ ..
T Consensus 19 ~~~v~Elv~NsiDa~~~g~a~~I~V~i~~---~--g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~~~~~~ 93 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGHAKRVDVILHA---D--QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQF 93 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECT---T--SCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC-------------
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEEeC---C--CEEEEEECCCCcCcccccccCcchhheeeeeeccccCcCCCcccc
Confidence 469999999999998877 9999998842 2 3899999999999988 344333 33333432 34
Q ss_pred CcccccccccccccccCCEEEEEeeeCC
Q 008256 176 TIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 176 ~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
..|+.|.|+++ ...++..++|.|++.+
T Consensus 94 s~GfrGeglss-inalS~~l~v~t~~~g 120 (201)
T 3fv5_A 94 SGGLHGVGISV-VNALSKRVEVNVRRDG 120 (201)
T ss_dssp --------CHH-HHHTEEEEEEEEEETT
T ss_pred cCcccceecch-hhcccceEEEEEEecC
Confidence 68999999964 4557889999999853
No 25
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.61 E-value=1.5e-08 Score=100.49 Aligned_cols=121 Identities=22% Similarity=0.238 Sum_probs=77.6
Q ss_pred ccccCccCccccCCCcCcccceecccc-cccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEE
Q 008256 71 AGTYAANITIKSTPVQGSLEHARVHPK-FLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVF 148 (572)
Q Consensus 71 a~~~~~~~~~~~~~~~~~~~~~~v~~~-fLhSnatsh~~~f~AIaELIDNAiDA~~~~-A~~V~I~i~~~~~~~~~~I~I 148 (572)
+.+|+. ...+-...++|++..|. |+-|... .-+..++.||||||+|+..++ ++.|.|.+.. ...|+|
T Consensus 8 ~~~y~~----~~i~~l~~le~vr~RPgmYiGs~~~--~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~-----~g~i~V 76 (226)
T 4emv_A 8 INNYND----DAIQVLEGLDAVRKRPGMYIGSTDG--AGLHHLVWEIVDNAVDEALSGFGDRIDVTINK-----DGSLTV 76 (226)
T ss_dssp -------------CCCBCTHHHHHCHHHHHSCSSH--HHHHHHHHHHHHHHHHHHHTTCCSEEEEEECT-----TSCEEE
T ss_pred hhcCCh----hhcEEcchhHHHhhCCceEEcCCCc--ccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeC-----CCeEEE
Confidence 456776 33344678899988884 4445432 445578999999999997654 7888887742 237999
Q ss_pred EECCCCCCHHH-------HHHhhh-cCcccccC----CCCcccccccccccccccCCEEEEEeeeCC
Q 008256 149 IDDGGGMDPES-------LRKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 149 ~DNG~GMs~e~-------l~~~~~-~G~S~K~~----~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
.|||.||+.+. ++-+|. +-.+.|.+ ....|+.|+|++ +...|+..++|.+++.+
T Consensus 77 ~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~s-vvNALS~~l~v~v~r~g 142 (226)
T 4emv_A 77 QDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSS-VVNALSSWLEVEITRDG 142 (226)
T ss_dssp EECSSCCCCSBCGGGCBHHHHHHHCBC--------------CGGGCCHH-HHHHTEEEEEEEEEETT
T ss_pred EEcCCCccccccccCceehheeEEeecccCccCccceEeccccccccch-hhhhcccceEEEEEeCC
Confidence 99999999987 666665 43334443 467899999996 45668889999999853
No 26
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.37 E-value=1.6e-07 Score=100.31 Aligned_cols=117 Identities=24% Similarity=0.301 Sum_probs=67.3
Q ss_pred cccCccCccccCCCcCcccceeccc-ccccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEE
Q 008256 72 GTYAANITIKSTPVQGSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFI 149 (572)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~v~~-~fLhSnatsh~~~f~AIaELIDNAiDA~~~~-A~~V~I~i~~~~~~~~~~I~I~ 149 (572)
.+|+. ....-...+++++.-| +|+-|... ...+.|+||||+|+..++ ++.|.|.+.. + ..|+|.
T Consensus 22 ~~Y~a----~~I~vL~glE~VRkRPgMYiGst~~-----~hlv~EivdNsiDea~ag~~~~I~V~i~~---d--gsI~V~ 87 (408)
T 3lnu_A 22 TRYNA----ADIEVLSGLDPVKRRPGMYTDTARP-----NHLAQEVIDNSVDEALAGHAKQIEVTLYK---D--GSCEVS 87 (408)
T ss_dssp ----------------CCHHHHHCGGGTSCTTST-----HHHHHHHHHHHHHHHHTTSCCEEEEEECT---T--SCEEEE
T ss_pred CCcCH----hHceeccccHHHhcCCccEECCCCc-----chhhHHHHHHHHHHhhcCCCceEEEEEeC---C--CeEEEE
Confidence 36777 2333467888888877 45544332 568999999999997664 8888888742 2 379999
Q ss_pred ECCCCCCHHH--------HHHhhh-cCcccccC----CCCcccccccccccccccCCEEEEEeeeCC
Q 008256 150 DDGGGMDPES--------LRKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 150 DNG~GMs~e~--------l~~~~~-~G~S~K~~----~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
|||.||+.+. ++-+|+ +-.+.|.+ ....|+.|+|++ +.-.|+..++|.+++.+
T Consensus 88 DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~s-vVNALS~~l~v~v~rdG 153 (408)
T 3lnu_A 88 DDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVS-VVNALSTKVELFIKREG 153 (408)
T ss_dssp ECSSCCCCSBCTTTCSBHHHHHHHCC--------------------CHH-HHHHTEEEEEEEEEETT
T ss_pred EcCCCCCcccccccCCcchheEEEecccCCCcCCCceeecCCccccccc-eehhccCeEEEEEEECC
Confidence 9999999876 344554 33333433 467799999986 45668899999999754
No 27
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.34 E-value=2.3e-07 Score=98.96 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=68.3
Q ss_pred ccHHHHHHHhhccchhhhh-C-CCceEEEEEEEccCCCCCeEEEEECCCCCCHHH--------HHHhhh-cCcccccC--
Q 008256 107 KWAFGAIAELLDNAVDEVQ-N-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPES--------LRKCMS-LGYSTKKA-- 173 (572)
Q Consensus 107 ~~~f~AIaELIDNAiDA~~-~-~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~--------l~~~~~-~G~S~K~~-- 173 (572)
.-+..++.||||||+||.. + .++.|.|.+.. +...|+|.|||.||+.+. ++-+|. +-.+.|.+
T Consensus 51 ~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~----~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~ 126 (400)
T 1zxm_A 51 PGLYKIFDEILVNAADNKQRDPKMSCIRVTIDP----ENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDD 126 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET----TTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGG
T ss_pred chHHHHHHHHHhhHHhHHhhcCCCceEEEEEEC----CCCEEEEEECCCcccCccccccCccchhheeeeecccCCCCCC
Confidence 3456799999999999962 2 38888888863 125899999999999887 555665 33333432
Q ss_pred --CCCcccccccccccccccCCEEEEEeeeC
Q 008256 174 --NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (572)
Q Consensus 174 --~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~ 202 (572)
.-..|+.|+|++ +.-.++..++|.++..
T Consensus 127 ~ykvSgGlhGvGls-vVnAlS~~l~v~v~~~ 156 (400)
T 1zxm_A 127 EKKVTGGRNGYGAK-LCNIFSTKFTVETASR 156 (400)
T ss_dssp GCCCCSCCSSCHHH-HHHHTEEEEEEEEEET
T ss_pred cccccCCcccccee-eeEEeccceEEEEecC
Confidence 457899999996 4556888999999875
No 28
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=98.28 E-value=1.4e-06 Score=84.58 Aligned_cols=98 Identities=21% Similarity=0.285 Sum_probs=61.9
Q ss_pred cccceeccc-ccccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh
Q 008256 88 SLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS 165 (572)
Q Consensus 88 ~~~~~~v~~-~fLhSnatsh~~~f~AIaELIDNAiDA~~~~-A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~ 165 (572)
.++|++.-| +|+-|.. ..-+..++.||||||+|+..++ ++.|.|.+.. + ..|+|.|||.||+.+.
T Consensus 12 ~le~vr~RPgmYiGs~~--~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~---~--g~i~V~DnG~Gip~~~------ 78 (198)
T 3ttz_A 12 GLEAVRKRPGMYIGSTS--ERGLHHLVWEIVDNSIDEALAGYANQIEVVIEK---D--NWIKVTDNGRGIPVDI------ 78 (198)
T ss_dssp HHHHHHHSHHHHHSCSS--HHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEG---G--GEEEEEECSSCCCCSB------
T ss_pred chHHHhcCCCcEECCCC--CcchHHHHHHHHHHHHhHHhcCCCcEEEEEEeC---C--CeEEEEECCCCccccc------
Confidence 445555444 3333322 2455678999999999987667 9999998864 1 3899999999999761
Q ss_pred cCcccccCCCCcccccccccccccccCCEEEEEeeeCC
Q 008256 166 LGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (572)
Q Consensus 166 ~G~S~K~~~~~iG~fGiG~KsAs~~lg~~v~V~Sr~~~ 203 (572)
...+....... .|+ + ++...|+..++|.+++.+
T Consensus 79 h~~~~~~~~e~--i~t--~-SvVNALS~~l~v~v~r~g 111 (198)
T 3ttz_A 79 QEKMGRPAVEV--ILT--S-SVVNALSQDLEVYVHRNE 111 (198)
T ss_dssp CTTTSSBHHHH--HHH--T-CHHHHTEEEEEEEEEETT
T ss_pred cCcCCCccccc--cce--e-EehhhhcCeEEEEEEECC
Confidence 11111110001 122 2 345567789999998854
No 29
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.24 E-value=8.5e-07 Score=96.51 Aligned_cols=97 Identities=20% Similarity=0.317 Sum_probs=68.7
Q ss_pred cHHHHHHHhhccchhhhhCCC--ceEEEEEEEcc-CCCCCeEEEEECCCCCCHHHHHHhhh-cCcccccC-CCCcccccc
Q 008256 108 WAFGAIAELLDNAVDEVQNGA--TFVKVDRVNIM-KDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKA-NKTIGQYGN 182 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A--~~V~I~i~~~~-~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~~-~~~iG~fGi 182 (572)
....+|.|||+||+||...+. ..|.|.+.... .++...|+|.|||.||+++++.++|. |..++|.. ....|..|+
T Consensus 32 ~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GL 111 (471)
T 1mu5_A 32 ALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGL 111 (471)
T ss_dssp HHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCTT
T ss_pred HHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhcccccccccccccCCCCcee
Confidence 455799999999999943221 17888876531 12456799999999999999999987 43444433 356677899
Q ss_pred ccccc---ccccCCE-EEEEeeeCCC
Q 008256 183 GFKTS---TMRLGAD-VIVFSRATHE 204 (572)
Q Consensus 183 G~KsA---s~~lg~~-v~V~Sr~~~~ 204 (572)
|+..+ +-.+++. +.|.|+..++
T Consensus 112 GL~iv~~l~~~~gG~~i~v~S~~~~g 137 (471)
T 1mu5_A 112 GVKAAVLYSQMHQDKPIEIETSPVNS 137 (471)
T ss_dssp THHHHHHHHHHHCCCCEEEEEECTTC
T ss_pred eHHHHHHHHHHhCCCceeEEEecCCC
Confidence 98543 3346677 9999997643
No 30
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.13 E-value=1.2e-06 Score=96.57 Aligned_cols=96 Identities=20% Similarity=0.319 Sum_probs=68.8
Q ss_pred cHHHHHHHhhccchhhhhCCC--ceEEEEEEEcc-CCCCCeEEEEECCCCCCHHHHHHhhh-cCcccccC-CCCcccccc
Q 008256 108 WAFGAIAELLDNAVDEVQNGA--TFVKVDRVNIM-KDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKA-NKTIGQYGN 182 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A--~~V~I~i~~~~-~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~~-~~~iG~fGi 182 (572)
....+|.|||+||+||...+. ..|.|.+.... .++...|+|.|||.||+++++.++|. |.++++.. ....|..|+
T Consensus 31 ~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GL 110 (530)
T 2zbk_B 31 ALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGL 110 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCSSSS
T ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCcccccCCCCccc
Confidence 455799999999999943221 16778776522 12456899999999999999999987 43444433 356788899
Q ss_pred ccccc---ccccCCE-EEEEeeeCC
Q 008256 183 GFKTS---TMRLGAD-VIVFSRATH 203 (572)
Q Consensus 183 G~KsA---s~~lg~~-v~V~Sr~~~ 203 (572)
|+..+ +-.+|++ +.|.|+..+
T Consensus 111 GLsiv~~l~~~~gG~~I~V~S~~~~ 135 (530)
T 2zbk_B 111 GVKAAVLYSQMHQDKPIEIETSPVN 135 (530)
T ss_dssp HHHHHHHHHHHHCCCCEEEEEECTT
T ss_pred hHHHHHHHHHHhCCCceEEEEecCC
Confidence 98532 3356676 999999764
No 31
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=98.06 E-value=5.2e-06 Score=73.93 Aligned_cols=86 Identities=19% Similarity=0.240 Sum_probs=63.6
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccc---c
Q 008256 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF---K 185 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~---K 185 (572)
...++.+||+||+.+ ....|.|.+.. .++...|.|.|||.||+++++.++|..+++.+... +-.|+|+ +
T Consensus 45 l~~il~nLl~NAi~~---~~~~i~i~~~~--~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~~---~g~GlGL~i~~ 116 (152)
T 1id0_A 45 FVEVMGNVLDNACKY---CLEFVEISARQ--TDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLR---PGQGVGLAVAR 116 (152)
T ss_dssp HHHHHHHHHHHHHHH---CSSEEEEEEEE--CSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCCC---TTCCSCHHHHH
T ss_pred HHHHHHHHHHHHHHh---CcCeEEEEEEe--cCCEEEEEEEeCCCCcCHHHHHHHhccceeccCCC---CCcccCHHHHH
Confidence 446899999999998 33477777765 34567899999999999999999998665544321 2346665 3
Q ss_pred ccccccCCEEEEEeeeC
Q 008256 186 TSTMRLGADVIVFSRAT 202 (572)
Q Consensus 186 sAs~~lg~~v~V~Sr~~ 202 (572)
...-.+|+++.+.+...
T Consensus 117 ~~~~~~gG~i~~~~~~~ 133 (152)
T 1id0_A 117 EITEQYEGKIVAGESML 133 (152)
T ss_dssp HHHHHTTCEEEEEECTT
T ss_pred HHHHHcCCEEEEEeCCC
Confidence 44566899999988764
No 32
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=98.03 E-value=3.2e-06 Score=78.69 Aligned_cols=90 Identities=22% Similarity=0.287 Sum_probs=63.7
Q ss_pred HHHHHhhccchhhhh-----------CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHH-------------------
Q 008256 111 GAIAELLDNAVDEVQ-----------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESL------------------- 160 (572)
Q Consensus 111 ~AIaELIDNAiDA~~-----------~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l------------------- 160 (572)
.+|.+||+||+.+.. .....|.|.+... ++...|.|.|||.||+++++
T Consensus 50 ~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~~--~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (189)
T 1i58_A 50 EPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHE--GNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLS 127 (189)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEE--TTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCC
T ss_pred HHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEec--CCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccc
Confidence 469999999999841 2356788877653 35678999999999999987
Q ss_pred -----HHhhhcCcccccCCCCccccccccc---ccccccCCEEEEEeeeC
Q 008256 161 -----RKCMSLGYSTKKANKTIGQYGNGFK---TSTMRLGADVIVFSRAT 202 (572)
Q Consensus 161 -----~~~~~~G~S~K~~~~~iG~fGiG~K---sAs~~lg~~v~V~Sr~~ 202 (572)
.++|..+++.+......+-.|+|+. ...-.+++.+.+.|...
T Consensus 128 ~~~~~~~if~~~~~~~~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~s~~~ 177 (189)
T 1i58_A 128 DQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSISIESEKD 177 (189)
T ss_dssp HHHHHGGGGSTTCSHHHHHHGGGTCCCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred hhhhHHHhcCCcccccccCCCCCCCccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 6677766665543222233566654 34556899999998853
No 33
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.98 E-value=3.5e-06 Score=82.06 Aligned_cols=93 Identities=22% Similarity=0.242 Sum_probs=62.6
Q ss_pred cHHHHHHHhhccchhhhhCCC--ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC-CCCcccccccc
Q 008256 108 WAFGAIAELLDNAVDEVQNGA--TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGF 184 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A--~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-~~~iG~fGiG~ 184 (572)
....+|.+||+||+++...+. ..|.|.+.. .++...|.|.|||.||+++++.++|...++.+.. ....+-.|+|+
T Consensus 138 ~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL 215 (258)
T 2c2a_A 138 RIRQVLLNLLNNGVKYSKKDAPDKYVKVILDE--KDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGL 215 (258)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEE--ETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTH
T ss_pred HHHHHHHHHHHHHHhcCcCCCCceeEEEEEec--CCCeEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHH
Confidence 344689999999999843222 346666654 3356779999999999999999999865544332 11222356775
Q ss_pred ---cccccccCCEEEEEeeeC
Q 008256 185 ---KTSTMRLGADVIVFSRAT 202 (572)
Q Consensus 185 ---KsAs~~lg~~v~V~Sr~~ 202 (572)
|...-.+|+++.|.|...
T Consensus 216 ~i~~~iv~~~gG~i~v~s~~~ 236 (258)
T 2c2a_A 216 AITKEIVELHGGRIWVESEVG 236 (258)
T ss_dssp HHHHHHHHHTTCEEEEEEETT
T ss_pred HHHHHHHHHcCCEEEEEecCC
Confidence 344567899999999864
No 34
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.98 E-value=7.5e-06 Score=73.06 Aligned_cols=88 Identities=18% Similarity=0.174 Sum_probs=59.5
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccc---
Q 008256 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK--- 185 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~K--- 185 (572)
...++.+||+||+.+. ....|.|.+... ++...|.|.|||.||+++++.++|...++.... .-+-.|+|+.
T Consensus 47 l~~il~nLl~NA~~~~--~~~~I~i~~~~~--~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~--~~~g~GlGL~i~~ 120 (150)
T 1ysr_A 47 LRLAVDNAIANAVKHG--GATLVQLSAVSS--RAGVEIAIDDNGSGVPEGERQVVFERFSRGSTA--SHSGSGLGLALVA 120 (150)
T ss_dssp HHHHHHHHHHHHHHTT--CCSEEEEEEEEE--TTEEEEEEEESSSCCCGGGHHHHHTSCC-------------CCCHHHH
T ss_pred HHHHHHHHHHHHHhcC--CCcEEEEEEEec--CCEEEEEEEECCCCCCHHHHHHHhcccccCCCC--CCCCCCcCHHHHH
Confidence 4468999999999983 234677777653 356789999999999999999999854432111 1123466653
Q ss_pred ccccccCCEEEEEeeeC
Q 008256 186 TSTMRLGADVIVFSRAT 202 (572)
Q Consensus 186 sAs~~lg~~v~V~Sr~~ 202 (572)
...-.+|+++.+.+...
T Consensus 121 ~~~~~~gG~i~~~~~~~ 137 (150)
T 1ysr_A 121 QQAQLHGGTASLENSPL 137 (150)
T ss_dssp HHHHHTTCEEEEEECTT
T ss_pred HHHHHcCCEEEEeecCC
Confidence 44567899999988754
No 35
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=97.95 E-value=3.3e-06 Score=94.71 Aligned_cols=95 Identities=19% Similarity=0.290 Sum_probs=64.7
Q ss_pred cHHHHHHHhhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-cCcccccC--CCCcccccc
Q 008256 108 WAFGAIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKA--NKTIGQYGN 182 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~--A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~~--~~~iG~fGi 182 (572)
.+..+|.|||+||+||...+ +..|.|.+.... .+...|+|.|||.||+.+++.++|. +.++.+.. ....|..|+
T Consensus 37 ~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~-~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~Gg~Gl 115 (621)
T 2q2e_B 37 SLITTVKEAVDNALDACEEAGILPDILVQVERTG-PDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGI 115 (621)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEET-TTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSSSSH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECC-CcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCCCcee
Confidence 45579999999999995321 227888776521 1345799999999999999999986 33333322 345688999
Q ss_pred ccccc---ccccCCE-EEEEeeeCC
Q 008256 183 GFKTS---TMRLGAD-VIVFSRATH 203 (572)
Q Consensus 183 G~KsA---s~~lg~~-v~V~Sr~~~ 203 (572)
|+..+ +-.+++. +.|.|+..+
T Consensus 116 GLsiv~~ls~~~gG~~I~V~S~~~g 140 (621)
T 2q2e_B 116 GISAAVLYAQMTAGRHTKILSKTSP 140 (621)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEECSS
T ss_pred chhhhhHHHHHhCCCceeEEeeccC
Confidence 98643 2334555 789898764
No 36
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.91 E-value=8.5e-06 Score=79.27 Aligned_cols=89 Identities=15% Similarity=0.065 Sum_probs=64.9
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccccccc
Q 008256 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~KsAs 188 (572)
...+|.+||+||+++... ...|.|.+.. .++...|.|.|||.||+++.+.++|...++.+....++|.+. .+...
T Consensus 156 l~~il~nLl~NA~~~~~~-~~~I~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~g~GlGL~i--~~~~~ 230 (268)
T 4ew8_A 156 LAQTLDHLVENALRQTPP-GGRVTLSARR--ALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDRGGPGLGLAL--VKALV 230 (268)
T ss_dssp HHHHHHHHHHHHHHHSCT-TCEEEEEEEE--CSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSSCCCTTHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-CCEEEEEEEe--cCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCCCCCcccHHH--HHHHH
Confidence 456899999999998421 2567777765 345678999999999999999999986666554333333333 24446
Q ss_pred cccCCEEEEEeeeC
Q 008256 189 MRLGADVIVFSRAT 202 (572)
Q Consensus 189 ~~lg~~v~V~Sr~~ 202 (572)
-.+|+.+.+.+...
T Consensus 231 ~~~gG~i~i~s~~~ 244 (268)
T 4ew8_A 231 ELHGGWVALESEPG 244 (268)
T ss_dssp HHTTCEEEEEECTT
T ss_pred HHcCCEEEEEecCC
Confidence 67899999988864
No 37
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.91 E-value=1.3e-05 Score=71.15 Aligned_cols=86 Identities=16% Similarity=0.166 Sum_probs=62.3
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccccc-
Q 008256 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT- 186 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~Ks- 186 (572)
....++.+||+||+.+.. ....|.|.+.. .++...|.|.|||.||+++++.++|...++.+.. -.|+|+..
T Consensus 47 ~l~~il~nll~NAi~~~~-~~~~I~i~~~~--~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~~-----g~GlGL~i~ 118 (152)
T 3a0y_A 47 RIKQVLINLVQNAIEATG-ENGKIKITSED--MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKTQ-----GTGLGLSIC 118 (152)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCEEEEEEEE--CSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC-------CCCCSHHHH
T ss_pred HHHHHHHHHHHHHHHhcC-CCCEEEEEEEe--cCCEEEEEEEeCCCCcCHHHHHhHhhhhccCCCC-----CCCcCHHHH
Confidence 344689999999999842 34567777765 3456789999999999999999999866654432 34666543
Q ss_pred --ccc-ccCCEEEEEeee
Q 008256 187 --STM-RLGADVIVFSRA 201 (572)
Q Consensus 187 --As~-~lg~~v~V~Sr~ 201 (572)
..- .+|+.+.+.+..
T Consensus 119 ~~~~~~~~gg~~~~~~~~ 136 (152)
T 3a0y_A 119 RKIIEDEHGGKIWTENRE 136 (152)
T ss_dssp HHHHHTTTSCEEEEEEET
T ss_pred HHHHHHhCCcEEEEecCC
Confidence 243 689999988764
No 38
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.90 E-value=1.2e-05 Score=84.89 Aligned_cols=93 Identities=17% Similarity=0.286 Sum_probs=68.9
Q ss_pred cHHHHHHHhhccchhhhhCCC------ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC-------C
Q 008256 108 WAFGAIAELLDNAVDEVQNGA------TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------N 174 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A------~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-------~ 174 (572)
....+|.+||+||+.+...+. ..|.|.+.. .++...|.|.|||.||+++++.++|...++.+.. .
T Consensus 243 ~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~--~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~ 320 (407)
T 2q8g_A 243 HLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTL--GNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRA 320 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEE--CSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSC
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe--CCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCC
Confidence 345689999999999864322 258887765 3356789999999999999999999966654432 2
Q ss_pred CCccccccccc---ccccccCCEEEEEeeeC
Q 008256 175 KTIGQYGNGFK---TSTMRLGADVIVFSRAT 202 (572)
Q Consensus 175 ~~iG~fGiG~K---sAs~~lg~~v~V~Sr~~ 202 (572)
...+-+|+|+. ...-.+|+++.|.|...
T Consensus 321 ~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~g 351 (407)
T 2q8g_A 321 VPLAGFGYGLPISRLYAQYFQGDLKLYSLEG 351 (407)
T ss_dssp CCSSCTTCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCcCCCHHHHHHHHHHhCCEEEEEEcCC
Confidence 34456788874 34566899999999864
No 39
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.89 E-value=1.3e-05 Score=84.17 Aligned_cols=93 Identities=20% Similarity=0.319 Sum_probs=65.8
Q ss_pred cHHHHHHHhhccchhhhhCCC------ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC------CC
Q 008256 108 WAFGAIAELLDNAVDEVQNGA------TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA------NK 175 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A------~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~------~~ 175 (572)
....+|.+||+||+.+...+. ..|.|.+.. .++...|.|.|+|.||+++++.++|...++.+.. ..
T Consensus 231 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~--~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~ 308 (394)
T 2btz_A 231 HLYHMLFELFKNAMRATVESHESSLILPPIKVMVAL--GEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGT 308 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEE--CSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC---------
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEe--CCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCC
Confidence 344689999999999965443 258888765 3356789999999999999999999966654432 22
Q ss_pred Cccccccccc---ccccccCCEEEEEeeeC
Q 008256 176 TIGQYGNGFK---TSTMRLGADVIVFSRAT 202 (572)
Q Consensus 176 ~iG~fGiG~K---sAs~~lg~~v~V~Sr~~ 202 (572)
..+-+|+|+. ...-.+|+++.|.|...
T Consensus 309 ~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g 338 (394)
T 2btz_A 309 PLAGFGYGLPISRLYAKYFQGDLQLFSMEG 338 (394)
T ss_dssp -----CCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCccCCHHHHHHHHHHhCCEEEEEecCC
Confidence 3455788863 34567899999999864
No 40
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=97.87 E-value=5.9e-06 Score=73.76 Aligned_cols=86 Identities=12% Similarity=0.121 Sum_probs=48.5
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCC----------CCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcc
Q 008256 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDN----------SPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIG 178 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~----------~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG 178 (572)
...++.+||+||+.+.......|.|.+.... + ...|.|.|||.||+++++.++|...++.+..
T Consensus 49 l~~il~nLl~NAik~~~~~~~~I~i~~~~~~--~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~~----- 121 (160)
T 1r62_A 49 IEQVLLNIVRNALQALGPEGGEIILRTRTAF--QLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREG----- 121 (160)
T ss_dssp HHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE--EEEETTEEEEEEEEEEEEEECTTC-----------------------
T ss_pred HHHHHHHHHHHHHHHhhccCCeEEEEEeccc--cccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCCC-----
Confidence 4468999999999985322566777765422 2 4679999999999999999999866655432
Q ss_pred ccccccc---ccccccCCEEEEEeee
Q 008256 179 QYGNGFK---TSTMRLGADVIVFSRA 201 (572)
Q Consensus 179 ~fGiG~K---sAs~~lg~~v~V~Sr~ 201 (572)
-.|+|+. ...-.+|+++.+.|..
T Consensus 122 g~GlGL~i~~~~~~~~gG~l~i~s~~ 147 (160)
T 1r62_A 122 GTGLGLSIARNLIDQHSGKIEFTSWP 147 (160)
T ss_dssp --CHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCccCHHHHHHHHHHCCCeEEEEeCC
Confidence 3466653 3455789999998875
No 41
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.87 E-value=1.1e-05 Score=86.46 Aligned_cols=89 Identities=21% Similarity=0.196 Sum_probs=65.0
Q ss_pred cHHHHHHHhhccchhhhh--CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHH--------Hhhh-cCcccccC---
Q 008256 108 WAFGAIAELLDNAVDEVQ--NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR--------KCMS-LGYSTKKA--- 173 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~--~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~--------~~~~-~G~S~K~~--- 173 (572)
-+...+.|+||||+|+.. ..++.|.|.+.. +...|+|.|||.||+.+... -+|+ +-...|.+
T Consensus 64 GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~----d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~~ 139 (418)
T 1pvg_A 64 GLFKIFDEILVNAADNKVRDPSMKRIDVNIHA----EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDE 139 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET----TTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTS
T ss_pred hHHHHHHHHHhCHHHHHHhcCCCCEEEEEEEC----CCCEEEEEECCCcccCcccccCCcccceEEEEEEecccccCCCc
Confidence 344589999999999963 237888888864 12589999999999976532 2454 33333433
Q ss_pred -CCCcccccccccccccccCCEEEEEeee
Q 008256 174 -NKTIGQYGNGFKTSTMRLGADVIVFSRA 201 (572)
Q Consensus 174 -~~~iG~fGiG~KsAs~~lg~~v~V~Sr~ 201 (572)
.-.-|+.|+|.+ +.-.|+..+.|.++.
T Consensus 140 ykvSGGLhGVG~S-vVNALS~~l~V~v~r 167 (418)
T 1pvg_A 140 KKVTGGRNGYGAK-LCNIFSTEFILETAD 167 (418)
T ss_dssp CCCCSCCSSCHHH-HHHHTEEEEEEEEEE
T ss_pred eeccCCccceeee-eeeeccceEEEEEEE
Confidence 356799999985 556688999999996
No 42
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.85 E-value=1.1e-05 Score=73.04 Aligned_cols=89 Identities=20% Similarity=0.178 Sum_probs=65.4
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccc--
Q 008256 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK-- 185 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~K-- 185 (572)
....+|.+||+||+.+ ....|.|.+... ++...|.|.|||.||+.+++.++|...++.+.... -+-.|+|+.
T Consensus 47 ~l~~il~nll~NAik~---~~~~I~i~~~~~--~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~~-~~g~GlGL~i~ 120 (161)
T 1bxd_A 47 SIKRAVANMVVNAARY---GNGWIKVSSGTE--PNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSART-ISGTGLGLAIV 120 (161)
T ss_dssp HHHHHHHHHHHHHHTT---CCSCEEEEEEEE--TTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCCCC-CCCCSCCCCTT
T ss_pred HHHHHHHHHHHHHHhh---cCCeEEEEEEEc--CCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCCCC-CCCcccCHHHH
Confidence 3456899999999998 366788877653 35678999999999999999999986655443221 234567764
Q ss_pred -ccccccCCEEEEEeeeC
Q 008256 186 -TSTMRLGADVIVFSRAT 202 (572)
Q Consensus 186 -sAs~~lg~~v~V~Sr~~ 202 (572)
...-.+|+++.+.+...
T Consensus 121 ~~~~~~~gG~i~~~~~~~ 138 (161)
T 1bxd_A 121 QRIVDNHNGMLELGTSER 138 (161)
T ss_dssp HHHHHHHTSEEEEEEETT
T ss_pred HHHHHHcCCEEEEEECCC
Confidence 34556899999988754
No 43
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=97.81 E-value=1.9e-05 Score=83.03 Aligned_cols=90 Identities=23% Similarity=0.296 Sum_probs=61.4
Q ss_pred HHHHHhhccchhhhh-----------CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHH-------------------
Q 008256 111 GAIAELLDNAVDEVQ-----------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESL------------------- 160 (572)
Q Consensus 111 ~AIaELIDNAiDA~~-----------~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l------------------- 160 (572)
.++.+||.||+++.. .....|.|.+.. .++...|.|.|||.||+++.+
T Consensus 109 ~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~--~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~ 186 (379)
T 1b3q_A 109 EPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH--EGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLS 186 (379)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEE--ETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSC
T ss_pred HHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEE--eCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCC
Confidence 469999999999831 124567777755 345678999999999999987
Q ss_pred -----HHhhhcCcccccCCCCcccccccc---cccccccCCEEEEEeeeC
Q 008256 161 -----RKCMSLGYSTKKANKTIGQYGNGF---KTSTMRLGADVIVFSRAT 202 (572)
Q Consensus 161 -----~~~~~~G~S~K~~~~~iG~fGiG~---KsAs~~lg~~v~V~Sr~~ 202 (572)
..+|..|++++......+-.|+|| |...-.+|+++.|.|...
T Consensus 187 ~~~~~~~iF~p~fst~~~~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g 236 (379)
T 1b3q_A 187 DQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSMGIESEKD 236 (379)
T ss_dssp THHHHSGGGSTTCC-----------CCCSHHHHHHHHHTTCEEEEEEETT
T ss_pred HHHHHHHhcCCCCccCCccCCCCCccccHHHHHHHHHHCCCEEEEEEcCC
Confidence 667888888776544445567776 345667899999999864
No 44
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.80 E-value=1.7e-05 Score=83.26 Aligned_cols=93 Identities=22% Similarity=0.297 Sum_probs=68.6
Q ss_pred cHHHHHHHhhccchhhhhCCC------ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC-------C
Q 008256 108 WAFGAIAELLDNAVDEVQNGA------TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------N 174 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A------~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-------~ 174 (572)
....+|.+||+||+.+...+. ..|.|.+.. .++...|.|.|+|.||+++++.++|...++.+.. .
T Consensus 230 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~--~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~ 307 (394)
T 2e0a_A 230 HLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVL--GKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRN 307 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEE--CSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------C
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEe--CCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCC
Confidence 345689999999999964322 258887765 3356789999999999999999999966654432 2
Q ss_pred CCccccccccc---ccccccCCEEEEEeeeC
Q 008256 175 KTIGQYGNGFK---TSTMRLGADVIVFSRAT 202 (572)
Q Consensus 175 ~~iG~fGiG~K---sAs~~lg~~v~V~Sr~~ 202 (572)
...+-+|+|+. ...-.+|+++.|.|...
T Consensus 308 ~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g 338 (394)
T 2e0a_A 308 APLAGFGYGLPISRLYAKYFQGDLNLYSLSG 338 (394)
T ss_dssp CCSSCSSCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCcccCHHHHHHHHHHhCCEEEEEecCC
Confidence 23455788874 34567899999999864
No 45
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.80 E-value=1.7e-05 Score=84.11 Aligned_cols=92 Identities=18% Similarity=0.248 Sum_probs=64.9
Q ss_pred HHHHHHHhhccchhhhhCC-------CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC-------C
Q 008256 109 AFGAIAELLDNAVDEVQNG-------ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------N 174 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~-------A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-------~ 174 (572)
...+|.+||+||+.+...+ ...|.|.+.. .++...|.|.|+|.||+++++.++|...++.+.. .
T Consensus 254 L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~--~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~ 331 (419)
T 1y8o_A 254 LFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTL--GKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRA 331 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEE--CSSEEEEEEEECSCCCCHHHHGGGGCTTTC------------
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe--CCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCC
Confidence 4468999999999986432 2258887765 3356789999999999999999999866654432 1
Q ss_pred CCccccccccc---ccccccCCEEEEEeeeC
Q 008256 175 KTIGQYGNGFK---TSTMRLGADVIVFSRAT 202 (572)
Q Consensus 175 ~~iG~fGiG~K---sAs~~lg~~v~V~Sr~~ 202 (572)
...+-+|+|+. ...-.+|+++.|.|...
T Consensus 332 ~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~g 362 (419)
T 1y8o_A 332 APLAGFGYGLPISRLYARYFQGDLKLYSMEG 362 (419)
T ss_dssp -CC--CTTHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCcCCeecCHHHHHHHHHHhCCEEEEEecCC
Confidence 23445688864 34567899999999864
No 46
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.77 E-value=2.6e-05 Score=74.32 Aligned_cols=88 Identities=16% Similarity=0.153 Sum_probs=64.9
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccc--
Q 008256 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK-- 185 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~K-- 185 (572)
....+|.+||+||+.+.. ....|.|.+... ++...|.|.|||.||+++++.++|...++.+.. +-.|+|+.
T Consensus 123 ~l~~il~nLl~NA~~~~~-~~~~i~i~~~~~--~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~~----~g~GlGL~i~ 195 (244)
T 3d36_A 123 KFRQCLLNVMKNAIEAMP-NGGTLQVYVSID--NGRVLIRIADTGVGMTKEQLERLGEPYFTTKGV----KGTGLGMMVV 195 (244)
T ss_dssp HHHHHHHHHHHHHHHTCT-TCEEEEEEEEEE--TTEEEEEEEECSSCCCHHHHHHTTSTTCCSSGG----GCCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-CCCeEEEEEEEe--CCEEEEEEEecCCCCCHHHHHHHhcccccCCCC----CCcchhHHHH
Confidence 345789999999999832 245677777653 456789999999999999999999866655421 22466653
Q ss_pred -ccccccCCEEEEEeeeC
Q 008256 186 -TSTMRLGADVIVFSRAT 202 (572)
Q Consensus 186 -sAs~~lg~~v~V~Sr~~ 202 (572)
...-.+|+.+.+.+...
T Consensus 196 ~~i~~~~gG~i~~~~~~~ 213 (244)
T 3d36_A 196 YRIIESMNGTIRIESEIH 213 (244)
T ss_dssp HHHHHHTTCEEEEEEETT
T ss_pred HHHHHHcCCEEEEEecCC
Confidence 34566899999998854
No 47
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.76 E-value=1.4e-05 Score=83.72 Aligned_cols=93 Identities=23% Similarity=0.288 Sum_probs=67.6
Q ss_pred cHHHHHHHhhccchhhhhCCC-------ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCC------
Q 008256 108 WAFGAIAELLDNAVDEVQNGA-------TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKAN------ 174 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A-------~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~------ 174 (572)
....+|.|||+||+.|...+. ..|.|.+.. .++...|.|.|+|.||+++++.++|...++.+...
T Consensus 238 ~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~--~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~ 315 (388)
T 1gkz_A 238 PLDYILPELLKNAMRATMESHLDTPYNVPDVVITIAN--NDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRI 315 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEE--CSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC---------
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEe--CCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCccccccc
Confidence 344689999999999974332 268888765 34567899999999999999999999666555421
Q ss_pred ---------------CCccccccccc---ccccccCCEEEEEeeeC
Q 008256 175 ---------------KTIGQYGNGFK---TSTMRLGADVIVFSRAT 202 (572)
Q Consensus 175 ---------------~~iG~fGiG~K---sAs~~lg~~v~V~Sr~~ 202 (572)
...+-+|+|+. ...-.+|+++.|.|...
T Consensus 316 ~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~g 361 (388)
T 1gkz_A 316 SPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQG 361 (388)
T ss_dssp ----------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred ccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecCC
Confidence 22345688864 34567899999999864
No 48
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.75 E-value=1.4e-05 Score=73.63 Aligned_cols=93 Identities=17% Similarity=0.206 Sum_probs=62.7
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccC-CCCccccccccc--
Q 008256 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFK-- 185 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-~~~iG~fGiG~K-- 185 (572)
...+|.+||+||+.+... ...+.|.+.....++...|.|.|||.||+.+.+.++|...++.... ....+-.|+|+.
T Consensus 44 l~~il~nLl~NAi~~~~~-~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv 122 (177)
T 3sl2_A 44 ITQVLDNIISNALKYSPE-GGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIA 122 (177)
T ss_dssp HHHHHHHHHHHHHHTCCT-TCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-CCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHHH
Confidence 346899999999998422 2445666543334456789999999999999999998855543322 223344577764
Q ss_pred -ccccccCCEEEEEeeeC
Q 008256 186 -TSTMRLGADVIVFSRAT 202 (572)
Q Consensus 186 -sAs~~lg~~v~V~Sr~~ 202 (572)
...-.+|+++.+.+...
T Consensus 123 ~~~~~~~~G~i~i~~~~~ 140 (177)
T 3sl2_A 123 KEMVQAHGGDIWADSIEG 140 (177)
T ss_dssp HHHHHHTTCCEEEEEETT
T ss_pred HHHHHHcCCEEEEEecCC
Confidence 33556889999988764
No 49
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.71 E-value=1e-05 Score=76.05 Aligned_cols=87 Identities=23% Similarity=0.217 Sum_probs=43.2
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccc---c
Q 008256 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF---K 185 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~---K 185 (572)
...++.+||+||+.+.. ....|.|.+.. ..|.|.|||.||+++++.++|...++.+.. .-+-.|+|+ |
T Consensus 118 l~~il~nLl~NAi~~~~-~~~~i~i~~~~------~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--~~~g~GlGL~i~~ 188 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSP-QGSVVDVTLNA------DNFIVRDNGPGVTPEALARIGERFYRPPGQ--TATGSGLGLSIVQ 188 (222)
T ss_dssp HHHHHHHHHHHHHHTCC-TTCEEEEEECS------SEEEEECSCC----------------------------CTHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-CCCeEEEEEcc------CeEEEEECCCCCCHHHHHHHHhhhccCCCC--CCCcccccHHHHH
Confidence 44688999999999832 23345555532 229999999999999999999855543321 112346665 3
Q ss_pred ccccccCCEEEEEeeeCCC
Q 008256 186 TSTMRLGADVIVFSRATHE 204 (572)
Q Consensus 186 sAs~~lg~~v~V~Sr~~~~ 204 (572)
...-.+|+++.|.|...++
T Consensus 189 ~i~~~~gG~i~i~s~~~~G 207 (222)
T 3jz3_A 189 RIAKLHGMNVEFGNAEQGG 207 (222)
T ss_dssp HHHHHTTCEEECCBCTTSS
T ss_pred HHHHHcCCEEEEEcCCCCc
Confidence 4456789999999887543
No 50
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=97.63 E-value=2.3e-05 Score=78.79 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=61.8
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccccc
Q 008256 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS 187 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~KsA 187 (572)
....++.+||+||+.+.. .+..|.|.+.. .++...|.|.|||.||+++.+.++|...++.+....++|.+. .+..
T Consensus 244 ~l~~vl~nLl~NA~k~~~-~~~~i~i~~~~--~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~~g~GlGL~i--~~~~ 318 (349)
T 3a0r_A 244 RIKQVLINLVQNAIEATG-ENGKIKITSED--MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKTQGTGLGLSI--CRKI 318 (349)
T ss_dssp HHHHHHHHHHTHHHHTTC-TTCCEEEEEEE--ETTEEEEEEEEESCCCCGGGGTTTSSSCCCC------CCCTH--HHHH
T ss_pred HHHHHHHHHHHHHHHhcc-CCCEEEEEEEe--cCCEEEEEEEECCCCCChHHHhhcCCCCccCCCCCccchHHH--HHHH
Confidence 455789999999999842 24567777765 345678999999999999999999997776664433333333 2333
Q ss_pred cc-ccCCEEEEEeee
Q 008256 188 TM-RLGADVIVFSRA 201 (572)
Q Consensus 188 s~-~lg~~v~V~Sr~ 201 (572)
.- .+|+.+.+.+..
T Consensus 319 v~~~~gg~i~~~~~~ 333 (349)
T 3a0r_A 319 IEDEHGGKIWTENRE 333 (349)
T ss_dssp HHHTTCSBCCEEECS
T ss_pred HHHhCCCEEEEEeCC
Confidence 43 689999988874
No 51
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.59 E-value=7e-05 Score=66.81 Aligned_cols=86 Identities=22% Similarity=0.269 Sum_probs=55.8
Q ss_pred HHHHHHHhhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccccc
Q 008256 109 AFGAIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~--A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~Ks 186 (572)
...++.|||+||+.+.... ...|.|.+... ++...|.|.|||.||+ ++.+++...++.+.. .+..|+|+..
T Consensus 40 l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~--~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~~---~~~~GlGL~i 112 (145)
T 1th8_A 40 IKTVVSEAVTNAIIHGYNNDPNGIVSISVIIE--DGVVHLTVRDEGVGIP--DIEEARQPLFTTKPE---LERSGMGFTI 112 (145)
T ss_dssp HHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEE--TTEEEEEEEECSSCCS--CHHHHTCCC----------CCCSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEe--CCEEEEEEEECCCCcC--hHHHhhcccccCCCC---CCCCcchHHH
Confidence 3468999999999873221 36677877653 3567899999999999 778888765554431 1235777654
Q ss_pred cccccCCEEEEEeeeC
Q 008256 187 STMRLGADVIVFSRAT 202 (572)
Q Consensus 187 As~~lg~~v~V~Sr~~ 202 (572)
+ -.+...+.+.+...
T Consensus 113 v-~~~~~~i~~~~~~~ 127 (145)
T 1th8_A 113 M-ENFMDEVIVESEVN 127 (145)
T ss_dssp H-HHHSSEEEEEEETT
T ss_pred H-HHHHheEEEEeCCC
Confidence 3 33455888877654
No 52
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.50 E-value=5.1e-05 Score=66.50 Aligned_cols=72 Identities=17% Similarity=0.128 Sum_probs=53.5
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccc---c
Q 008256 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF---K 185 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~---K 185 (572)
...++.|||+||+.+. .+..|.|.+... ++...|.|.|||.||+++.+ +-.|+|+ +
T Consensus 41 l~~il~nll~Na~k~~--~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~-----------------~g~GlGL~~~~ 99 (128)
T 3ehg_A 41 LSMCLKEAVTNVVKHS--QAKTCRVDIQQL--WKEVVITVSDDGTFKGEENS-----------------FSKGHGLLGMR 99 (128)
T ss_dssp HHHHHHHHHHHHHHHT--CCSEEEEEEEEE--TTEEEEEEEESSCCCSCSSC-----------------CCTTSHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--CCcEEEEEEEEe--CCEEEEEEEECCcCcCcccC-----------------CCCCccHHHHH
Confidence 3458999999999983 467788888653 35678999999999997765 1125554 3
Q ss_pred ccccccCCEEEEEeee
Q 008256 186 TSTMRLGADVIVFSRA 201 (572)
Q Consensus 186 sAs~~lg~~v~V~Sr~ 201 (572)
...-.+|+++.+.|..
T Consensus 100 ~~~~~~gG~i~~~s~~ 115 (128)
T 3ehg_A 100 ERLEFANGSLHIDTEN 115 (128)
T ss_dssp HHHHHTTCEEEEECSS
T ss_pred HHHHHcCCEEEEEeCC
Confidence 4455789999998876
No 53
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=97.32 E-value=0.00017 Score=67.89 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=50.2
Q ss_pred HHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccccccc
Q 008256 110 FGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTM 189 (572)
Q Consensus 110 f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~KsAs~ 189 (572)
+.++.||++||+.+. .+..|.|.+... ++...|.|.|||.||+++.+ ...++|.+. .+...-
T Consensus 132 ~~il~nll~Na~k~~--~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~------------~g~GlGL~~--~~~~v~ 193 (218)
T 3ehh_A 132 SMCLKEAVTNVVKHS--QAKTCRVDIQQL--WKEVVITVSDDGTFKGEENS------------FSKGHGLLG--MRERLE 193 (218)
T ss_dssp HHHHHHHHHHHHHHT--CCSEEEEEEEEE--TTEEEEEEEESSCCCC--------------------CHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCEEEEEEEEe--CCEEEEEEEECCcCCCCCCC------------CCCCCCHHH--HHHHHH
Confidence 458999999999983 467788887653 35678999999999999876 112233322 244456
Q ss_pred ccCCEEEEEeee
Q 008256 190 RLGADVIVFSRA 201 (572)
Q Consensus 190 ~lg~~v~V~Sr~ 201 (572)
.+|+.+.|.|..
T Consensus 194 ~~gG~i~~~s~~ 205 (218)
T 3ehh_A 194 FANGSLHIDTEN 205 (218)
T ss_dssp HTTCEEEEECSS
T ss_pred HcCCEEEEeCCC
Confidence 789999998876
No 54
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=97.26 E-value=0.00019 Score=62.10 Aligned_cols=70 Identities=24% Similarity=0.303 Sum_probs=53.6
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccc---
Q 008256 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF--- 184 (572)
Q Consensus 108 ~~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~--- 184 (572)
....++.|||+||+.+. .+..|.|.+... ++ ..|.|.|||.||+++. .|+|+
T Consensus 43 ~l~~il~nll~NA~k~~--~~~~i~i~~~~~--~~-~~i~v~D~G~gi~~~~--------------------~GlGL~i~ 97 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHA--AASTLTVRVKVD--DD-LCIEVTDNGRGMPDEF--------------------TGSGLTNL 97 (129)
T ss_dssp HHHHHHHHHHHHCCCCS--SCCEEEEEEEES--SE-EEEEEEECCCCCTTTT--------------------CSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC--CCceEEEEEEEc--CC-EEEEEecCCCCCCccc--------------------CCcCHHHH
Confidence 44568999999999983 467788888763 34 7899999999998765 25565
Q ss_pred cccccccCCEEEEEeeeC
Q 008256 185 KTSTMRLGADVIVFSRAT 202 (572)
Q Consensus 185 KsAs~~lg~~v~V~Sr~~ 202 (572)
+...-.+|+++.+.+...
T Consensus 98 ~~~~~~~gG~i~~~~~~~ 115 (129)
T 3zxo_A 98 RQRAEQAGGEFTLASMPG 115 (129)
T ss_dssp HHHHHHTTCEEEEEECTT
T ss_pred HHHHHHcCCEEEEeeCCC
Confidence 344567899999998865
No 55
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.13 E-value=0.00025 Score=61.10 Aligned_cols=69 Identities=23% Similarity=0.313 Sum_probs=52.4
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCcccccccc---c
Q 008256 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF---K 185 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~---K 185 (572)
...++.||++||+.+. .+..|.|.+... ++ ..|.|.|||.||+++. . |+|+ +
T Consensus 40 l~~il~nll~Na~k~~--~~~~i~i~~~~~--~~-~~i~v~D~G~gi~~~~---------------~-----GlGL~~~~ 94 (124)
T 3zxq_A 40 AEAVLREAVSNAVRHA--NATSLAINVSVE--DD-VRVEVVDDGVGISGDI---------------T-----ESGLRNLR 94 (124)
T ss_dssp HHHHHHHHHHHHHTCT--TCCEEEEEEEEE--EE-EEEEEEECCCSSCGGG---------------S-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCCEEEEEEEeC--CC-EEEEEEECCCCCCccc---------------c-----ccCHHHHH
Confidence 3468999999999973 456788887763 24 7899999999999876 1 5665 3
Q ss_pred ccccccCCEEEEEeeeC
Q 008256 186 TSTMRLGADVIVFSRAT 202 (572)
Q Consensus 186 sAs~~lg~~v~V~Sr~~ 202 (572)
...-.+|+++.+.+...
T Consensus 95 ~~~~~~gG~i~~~~~~~ 111 (124)
T 3zxq_A 95 QRADDAGGEFTVENMPT 111 (124)
T ss_dssp HHHHHHTCEEEEEECTT
T ss_pred HHHHHhCCEEEEEEcCC
Confidence 44567899999988764
No 56
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.00048 Score=82.25 Aligned_cols=88 Identities=22% Similarity=0.222 Sum_probs=59.3
Q ss_pred HHHHHHHhhccchhhhhCC-C-ceEEEEEEEccCCCCCeEEEEECCCCCCHH--------HHHHhhh-cCcccccC----
Q 008256 109 AFGAIAELLDNAVDEVQNG-A-TFVKVDRVNIMKDNSPALVFIDDGGGMDPE--------SLRKCMS-LGYSTKKA---- 173 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~-A-~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e--------~l~~~~~-~G~S~K~~---- 173 (572)
..-.+.|+||||+|...++ + +.|.|.+.. ....|+|.|||.||+-+ .++-+|+ +-.+.|.+
T Consensus 60 L~hl~~EildNsiDea~ag~~~~~I~V~i~~----~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~y 135 (1177)
T 4gfh_A 60 LFKIFDEILVNAADNKVRDPSMKRIDVNIHA----EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEK 135 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCEEEEEEET----TTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSSC
T ss_pred eeeEeeEEEEChHhHHhhCCCCCeEEEEEEC----CCCEEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCCCC
Confidence 3457899999999965444 3 678887753 23589999999999854 2233454 33334443
Q ss_pred CCCcccccccccccccccCCEEEEEeee
Q 008256 174 NKTIGQYGNGFKTSTMRLGADVIVFSRA 201 (572)
Q Consensus 174 ~~~iG~fGiG~KsAs~~lg~~v~V~Sr~ 201 (572)
.-.-|+.|+|.+ +.-.|+..+.|.+..
T Consensus 136 kvSGGLHGVG~s-vVNALS~~~~vev~~ 162 (1177)
T 4gfh_A 136 KVTGGRNGYGAK-LCNIFSTEFILETAD 162 (1177)
T ss_dssp CCCSCCSSCHHH-HHHHTEEEEEEEEEE
T ss_pred eEeccCCChhhh-HHhhcCCceEEEEEE
Confidence 345699999985 344577777776653
No 57
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=96.80 E-value=0.00064 Score=66.63 Aligned_cols=85 Identities=15% Similarity=0.109 Sum_probs=60.4
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCC--CCHHHHHHhhhcCcccccCCCCcccccccc--
Q 008256 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGG--MDPESLRKCMSLGYSTKKANKTIGQYGNGF-- 184 (572)
Q Consensus 109 ~f~AIaELIDNAiDA~~~~A~~V~I~i~~~~~~~~~~I~I~DNG~G--Ms~e~l~~~~~~G~S~K~~~~~iG~fGiG~-- 184 (572)
...++.+||+||++|...+ ..|.|.+.. .++...|.|.|+|.| |+++.+.+.|...++.+.. | .|+|+
T Consensus 147 ~~qvl~NLl~NA~~a~~~g-g~I~v~~~~--~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~~~----G-~GLGLai 218 (247)
T 4fpp_A 147 SSRAVLNIAQIAASALPAG-GVATVKGVA--ADGRFSIIADAKGPRARLRPEVLAGLKGEPLAEGLG----G-PWVQAAY 218 (247)
T ss_dssp HHHHHHHHHHHHHTTCTTC-CEEEEEEEE--ETTEEEEEEEEESTTCCCCHHHHHHHTTCCCCSSCH----H-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC-CeEEEEEEE--ECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCCCCC----C-ccHHHHH
Confidence 3468999999999985333 457777765 346678999999987 7788778888744443322 2 26665
Q ss_pred -cccccccCCEEEEEeee
Q 008256 185 -KTSTMRLGADVIVFSRA 201 (572)
Q Consensus 185 -KsAs~~lg~~v~V~Sr~ 201 (572)
|...-..|+++.|.|..
T Consensus 219 ~~~iv~~hGG~i~v~s~~ 236 (247)
T 4fpp_A 219 LNALVRAAGGQIAVEIGE 236 (247)
T ss_dssp HHHHHHHTTCEEEEEEET
T ss_pred HHHHHHHcCCEEEEEEcC
Confidence 34567789999998763
No 58
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=94.59 E-value=0.018 Score=55.34 Aligned_cols=58 Identities=17% Similarity=0.199 Sum_probs=39.3
Q ss_pred HHHHhhccchhhhhC-----CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcc
Q 008256 112 AIAELLDNAVDEVQN-----GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYS 169 (572)
Q Consensus 112 AIaELIDNAiDA~~~-----~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S 169 (572)
.+.+|++||++|+.+ ....|.|.+..+..++...|.|.|+|.|++.+.+.++|.-|++
T Consensus 109 ~lgnLi~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if~~~~~ 171 (192)
T 1ixm_A 109 KLAKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQNGYE 171 (192)
T ss_dssp HHHHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC--------
T ss_pred HHHHHHHHHHHHHHhhhccCCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 578899999999743 3566888886531145789999999999999999999875554
No 59
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=90.04 E-value=0.24 Score=52.10 Aligned_cols=73 Identities=21% Similarity=0.187 Sum_probs=42.7
Q ss_pred HHHHHHhhccchhhhhC--CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcCcccccCCCCccccccccccc
Q 008256 110 FGAIAELLDNAVDEVQN--GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS 187 (572)
Q Consensus 110 f~AIaELIDNAiDA~~~--~A~~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~iG~fGiG~KsA 187 (572)
.-++.||+.||+..... ....|.|.+...+ ++...|.|.|+|.|+++. + .. +.-|.|+..
T Consensus 299 ~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~-~~~l~i~V~D~G~g~~~~----------~-~~-----~~~G~GL~l- 360 (399)
T 3ke6_A 299 VHAISEFVENAVEHGYATDVSKGIVVAAALAG-DGNVRASVIDRGQWKDHR----------D-GA-----RGRGRGLAM- 360 (399)
T ss_dssp HHHHHHHHHHHHHHBCCSCCTTCEEEEEEECT-TSEEEEEEEESCBC----------------------------CHHH-
T ss_pred HHHHHHHHHHHHHhcccCCCCceEEEEEEEcC-CCEEEEEEEECCCCCCCC----------C-CC-----CCCCcHHHH-
Confidence 35899999999998210 1456888776532 346789999999999876 1 00 223555543
Q ss_pred ccccCCEEEEEee
Q 008256 188 TMRLGADVIVFSR 200 (572)
Q Consensus 188 s~~lg~~v~V~Sr 200 (572)
.-.++..+.+.+.
T Consensus 361 v~~l~~~~~~~~~ 373 (399)
T 3ke6_A 361 AEALVSEARIMHG 373 (399)
T ss_dssp HHTTSSEEEEEEE
T ss_pred HHHHHHheeeEEC
Confidence 3447788876654
No 60
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=42.96 E-value=60 Score=32.43 Aligned_cols=63 Identities=8% Similarity=0.145 Sum_probs=37.7
Q ss_pred cCceEEEEcCceecc-cccccCCCCccCceEEEEEecCccCCCCCcccccccHHHHHHHHHHHHHHH
Q 008256 411 VSGFNVYHKNRLIRP-FWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTL 476 (572)
Q Consensus 411 ~~Gf~VY~nnRLI~~-~~kv~~~~~~~grgviGVleadflepthnKQdFe~t~~y~~l~~~L~e~l~ 476 (572)
..|+-+|+|.=+|.- .+.+... .-+=|=|||+++-|+++-+..-++.+...+.++..|.+.+.
T Consensus 68 ~~~ikLYvrrVfI~d~~~~llP~---yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl 131 (260)
T 1usu_A 68 KNNIKLYVRRVFITDEAEDLIPE---WLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLI 131 (260)
T ss_dssp -CCEEEEETTEEEESCCTTSSCG---GGTTCEEEEEESSCCSCC------CCHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeeeEeccchhhhchH---HHHHheeccccCCcCCccCHHHhcccHHHHHHHHHHHHHHH
Confidence 569999999988852 1111111 11235588899999999999888888877777666655544
No 61
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=36.23 E-value=68 Score=32.02 Aligned_cols=63 Identities=11% Similarity=0.218 Sum_probs=31.5
Q ss_pred cCceEEEEcCceecc-cccccCCCCccCceEEEEEecCccCCCCCcccccccHHHHHHHHHHHHHHH
Q 008256 411 VSGFNVYHKNRLIRP-FWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTL 476 (572)
Q Consensus 411 ~~Gf~VY~nnRLI~~-~~kv~~~~~~~grgviGVleadflepthnKQdFe~t~~y~~l~~~L~e~l~ 476 (572)
..|+-+|+|+=+|.- .+.+.... -+=|=|||+++-|+++-+..-++.+...+.+++.|.+.+.
T Consensus 70 ~~~ikLYvrrVfI~d~~~~llP~y---L~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~kkvl 133 (263)
T 1y6z_A 70 SRGIRLYVKRVFINDKFSESIPRW---LTFLRGIVDSENLPLNVGREILQKSKMLSIINKRIVLKSI 133 (263)
T ss_dssp -CCEEEEETTEEEESCGGGGSCGG---GTTCEEEEEECC------------CTTHHHHHHHHHHHHH
T ss_pred hcCeeEEEeeeEeecchhhhchHH---HHHHeeccccccCCCccchhhhcccHHHHHHHHHHHHHHH
Confidence 569999999998862 22222111 1235578899999999998888877777666666554444
No 62
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=33.55 E-value=99 Score=31.56 Aligned_cols=63 Identities=14% Similarity=0.146 Sum_probs=42.5
Q ss_pred ccCceEEEEcCceecc-cccccCCCCccCceEEEEEecCccCCCCCcccccccHHHHHHHHHHHHHH
Q 008256 410 SVSGFNVYHKNRLIRP-FWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMT 475 (572)
Q Consensus 410 ~~~Gf~VY~nnRLI~~-~~kv~~~~~~~grgviGVleadflepthnKQdFe~t~~y~~l~~~L~e~l 475 (572)
...|+-+|+|+=+|.- .+.+.... -+=|=|||+++-|+++-+..-++.+...+.+++.|.+++
T Consensus 65 ~~~~ikLYvrrVfI~D~~eeLlP~y---L~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~Irk~l~kKv 128 (303)
T 2gq0_A 65 HKHGLKLYVQRVFIMDDAEQFMPNY---LRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRV 128 (303)
T ss_dssp CCCSEEEEETTEEEEEEEGGGSCGG---GTTCEEEEEESSSCTTCCHHHHHHCHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEeceEeecchhhhchHH---HHHhhcccccccCCcccchHhhcccHHHHHHHHHHHHHH
Confidence 3679999999998862 12221111 123557889999999999888888777766665554443
No 63
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=29.26 E-value=1.2e+02 Score=30.84 Aligned_cols=64 Identities=8% Similarity=0.143 Sum_probs=37.4
Q ss_pred ccCceEEEEcCceecc-cccccCCCCccCceEEEEEecCccCCCCCcccccccHHHHHHHHHHHHHHH
Q 008256 410 SVSGFNVYHKNRLIRP-FWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTL 476 (572)
Q Consensus 410 ~~~Gf~VY~nnRLI~~-~~kv~~~~~~~grgviGVleadflepthnKQdFe~t~~y~~l~~~L~e~l~ 476 (572)
...|+-+|+|.=+|.- .+.+... .-+=|-|||+++-|+.+-+..-++.+...+.++..|.+.+.
T Consensus 65 ~~~~ikLYvrrVfI~d~~~~llP~---yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~k~i~kkvl 129 (288)
T 1hk7_A 65 KKNNIKLYVRRVFITDEAEDLIPE---WLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLI 129 (288)
T ss_dssp CCCCCEEEETTEEEESSCSSSSCG---GGTTCEEEEEESSCCCC-------CCHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEeeeEeecchhhhchH---HHHHHhhcccccccCCcccHHHhccCHHHHHHHHHHHHHHH
Confidence 3569999999988852 1111111 11235688899999999988888888877777666654443
No 64
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=25.06 E-value=1.8e+02 Score=29.09 Aligned_cols=61 Identities=10% Similarity=0.176 Sum_probs=40.5
Q ss_pred ccCceEEEEcCceecc-cccccCCCCccCceEEEEEecCccCCCCCcccccccHHHHHHHHHHHH
Q 008256 410 SVSGFNVYHKNRLIRP-FWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQ 473 (572)
Q Consensus 410 ~~~Gf~VY~nnRLI~~-~~kv~~~~~~~grgviGVleadflepthnKQdFe~t~~y~~l~~~L~e 473 (572)
...|+-+|+|.=+|.- .+.+... .-+=|=|||+++-|+++-++.-++.+...+.++..|.+
T Consensus 67 ~~~~ikLYv~rVfI~d~~~ellP~---yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~k 128 (268)
T 3pry_A 67 KKNNIKLYVRRVFIMDSCDELIPE---YLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVK 128 (268)
T ss_dssp -CCCEEEEETTEEEESCCGGGSCG---GGTTCEEEEEESSSCSSCSSCCHHHHHHHHHHHHHHHH
T ss_pred hcCCeeEEEEEEEeecchhhhccc---hhhheEEEecCCCCCccccHHHhccCHHHHHHHHHHHH
Confidence 4579999999988852 1222111 11235688899999999998888877776666554443
No 65
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=24.78 E-value=1.3e+02 Score=31.85 Aligned_cols=63 Identities=8% Similarity=0.131 Sum_probs=43.2
Q ss_pred ccCceEEEEcCceecc-cccccCCCCccCceEEEEEecCccCCCCCcccccccHHHHHHHHHHHHHH
Q 008256 410 SVSGFNVYHKNRLIRP-FWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMT 475 (572)
Q Consensus 410 ~~~Gf~VY~nnRLI~~-~~kv~~~~~~~grgviGVleadflepthnKQdFe~t~~y~~l~~~L~e~l 475 (572)
...|+-+|+|+=+|.- .+.+... .-+=|=|||+++-|+++-+..-++.+...+.+++.|.+++
T Consensus 65 ~~~~ikLYvrrVfI~d~~~~llP~---yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~~~l~kkv 128 (405)
T 2cge_A 65 KKNNIKLYVRRVFITDEAEDLIPE---WLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKL 128 (405)
T ss_dssp CCCCCEEEETTEEEESSCSSSSCG---GGTTCEEEEEESSCCSSCCTTCTHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEeeeEecCchhhhChH---HHHHHhhcccccccCcccChhhhcccHHHHHHHHHHHHHH
Confidence 3569999999988852 1111111 1123558889999999999988888887777766665444
Done!