BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008257
(572 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 439 LLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLL 498
+++ +L+ LL H + KVV +L A+ ++ G DI+ V++ C A LL
Sbjct: 230 VIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSL---LHLL 285
Query: 499 EKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557
E++++ A W + I + + D N+ AL+ Q A++RTR+ A A+ +
Sbjct: 286 SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 344
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 439 LLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLL 498
+++ +L+ LL H + KVV +L A+ ++ G DI+ V++ C A LL
Sbjct: 227 VIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSL---LHLL 282
Query: 499 EKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557
E++++ A W + I + + D N+ AL+ Q A++RTR+ A A+ +
Sbjct: 283 SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 341
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 446 EKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENL 505
++L+ LL H + V +L A+ ++ G D++ V++ G+ P L +LL EN+
Sbjct: 214 KRLVELLSHESTLVQTPALRAVGNIVT-GNDLQTQVVI---NAGVLPALRLLLSSPKENI 269
Query: 506 QRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557
++ A W + I + + D N+ LV + A+Y+T++ A A+ +
Sbjct: 270 KKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 321
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 446 EKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENL 505
++L+ LL H + V +L A+ ++ G D++ V++ G+ P L +LL EN+
Sbjct: 214 KRLVELLSHESTLVQTPALRAVGNIVT-GNDLQTQVVI---NAGVLPALRLLLSSPKENI 269
Query: 506 QRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557
++ A W + I + + D N+ LV + A+Y+T++ A A+ +
Sbjct: 270 KKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 321
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 446 EKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENL 505
++L+ LL H + V +L A+ ++ G D++ V++ G+ P L +LL EN+
Sbjct: 302 KRLVELLSHESTLVQTPALRAVGNIVT-GNDLQTQVVINA---GVLPALRLLLSSPKENI 357
Query: 506 QRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557
++ A W + I + + D N+ LV + A+Y+T++ A A+ +
Sbjct: 358 KKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 409
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 446 EKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENL 505
++L+ LL H + V +L A+ ++ G D++ V++ G+ P L +LL EN+
Sbjct: 215 KRLVELLSHESTLVQTPALRAVGNIVT-GNDLQTQVVI---NAGVLPALRLLLSSPKENI 270
Query: 506 QRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557
++ A W + I + + D N+ LV + A+ +T++ A A+ +
Sbjct: 271 KKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 322
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 446 EKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENL 505
++L+ LL H + V +L A+ ++ G D++ V++ G+ P L +LL EN+
Sbjct: 215 KRLVELLSHESTLVQTPALRAVGNIVT-GNDLQTQVVI---NAGVLPALRLLLSSPKENI 270
Query: 506 QRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557
++ A W + I + + D N+ LV + A+ +T++ A A+ +
Sbjct: 271 KKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 322
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 446 EKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENL 505
++L+ LL H + V +L A+ ++ G D++ V++ G+ P L +LL EN+
Sbjct: 216 KRLVELLSHESTLVQTPALRAVGNIVT-GNDLQTQVVI---NAGVLPALRLLLSSPKENI 271
Query: 506 QRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557
++ A W + I + + D N+ LV + A+ +T++ A A+ +
Sbjct: 272 KKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 323
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 446 EKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENL 505
++L+ LL H + V +L A+ ++ G D++ V++ G+ P L +LL EN+
Sbjct: 216 KRLVELLSHESTLVQTPALRAVGNIVT-GNDLQTQVVI---NAGVLPALRLLLSSPKENI 271
Query: 506 QRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557
++ A W + I + + D N+ LV + A+ +T++ A A+ +
Sbjct: 272 KKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 323
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 438 CLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVL 497
+++ A+ L+ LL NE++++ +L ALS + G + +Q V EA G +P L+ L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVK---EA-GAEPALEQL 188
Query: 498 LEKRTENLQRRAVWVVERI 516
E +Q+ A +E+I
Sbjct: 189 QSSPNEKIQKEAQEALEKI 207
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 438 CLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVL 497
+++ A+ L+ LL NE++++ +L ALS + G + Q V+ G P L L
Sbjct: 49 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA----GALPALVQL 104
Query: 498 LEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557
L E + + A+W + I + + D ALV + + Q A AL +
Sbjct: 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164
Query: 558 I 558
I
Sbjct: 165 I 165
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 438 CLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVL 497
+++ A+ L+ LL NE++++ +L ALS + G + Q V+ G P L L
Sbjct: 49 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA----GALPALVQL 104
Query: 498 LEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557
L E + + A+W + I + + D ALV + + Q A AL +
Sbjct: 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164
Query: 558 I 558
I
Sbjct: 165 I 165
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 438 CLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVL 497
+++ A+ L+ LL NE++++ +L ALS + G + Q V+ G P L L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA----GALPALVQL 188
Query: 498 LEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557
L E + + A+W + I + + + L H + + ++ A+ AL+
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248
Query: 558 I 558
+
Sbjct: 249 L 249
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 11/159 (6%)
Query: 1 MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAF- 59
+ SS +E +L ++A L+N+ N Q + P L Q+L P E L A +
Sbjct: 62 LLSSPNEQIL--QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 119
Query: 60 LGDLALNSDVKVLVARTVGS--CLINIMKSGNMQAREAALKALNQISS-CEPSAKVLIHA 116
L ++A + ++ G+ L+ ++ S N Q + AL AL+ I+S + +I A
Sbjct: 120 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 179
Query: 117 GILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD 155
G LP LV+ L + L L L+N+ + G++
Sbjct: 180 GALPALVQLLSSPNEQILQEAL-----WALSNIASGGNE 213
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 438 CLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVL 497
+++ A+ L+ LL NE++++ +L ALS + G + Q V+ G P L L
Sbjct: 49 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA----GALPALVQL 104
Query: 498 LEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557
L E + + A+W + I + + D ALV + + Q A AL +
Sbjct: 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164
Query: 558 I 558
I
Sbjct: 165 I 165
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 438 CLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVL 497
+++ A+ L+ LL NE++++ +L ALS + G + +Q V EA G L+ L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVK---EA-GALEKLEQL 188
Query: 498 LEKRTENLQRRAVWVVERI 516
E +Q+ A +E++
Sbjct: 189 QSHENEKIQKEAQEALEKL 207
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 438 CLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVL 497
+++ A+ L+ LL NE++++ +L ALS + G + Q V+ G P L L
Sbjct: 49 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA----GALPALVQL 104
Query: 498 LEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557
L E + + A+W + I + + D ALV + + Q A AL +
Sbjct: 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164
Query: 558 I 558
I
Sbjct: 165 I 165
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 438 CLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVL 497
+++ A+ L+ LL NE++++ +L ALS + G + +Q V EA G L+ L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVK---EA-GALEKLEQL 188
Query: 498 LEKRTENLQRRAVWVVERI 516
E +Q+ A +E++
Sbjct: 189 QSHENEKIQKEAQEALEKL 207
>pdb|2D0T|A Chain A, Crystal Structure Of 4-Phenylimidazole Bound Form Of Human
Indoleamine 2,3-Dioxygenase
pdb|2D0T|B Chain B, Crystal Structure Of 4-Phenylimidazole Bound Form Of Human
Indoleamine 2,3-Dioxygenase
pdb|2D0U|A Chain A, Crystal Structure Of Cyanide Bound Form Of Human
Indoleamine 2,3-Dioxygenase
pdb|2D0U|B Chain B, Crystal Structure Of Cyanide Bound Form Of Human
Indoleamine 2,3-Dioxygenase
Length = 406
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 15 AEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVA 74
A+ LAN +K + N EN +L +G L + L ++A S +KV+
Sbjct: 130 ADCVLANWKKKDPNKPLTYEN---MDVLFSFRDGDCSKGFFLVSLLVEIAAASAIKVIP- 185
Query: 75 RTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIH 115
+ K+ MQ R+ LKAL +I+SC A + H
Sbjct: 186 --------TVFKAMQMQERDTLLKALLEIASCLEKALQVFH 218
>pdb|1TXG|A Chain A, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
pdb|1TXG|B Chain B, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
Length = 335
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 498 LEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAE 552
+++ E L+RR V VVE +T + AY +S N T L+D+ Y ++ E
Sbjct: 273 IDEAMEELERRGVGVVEG-YKTAEKAYRLSSKINADTKLLDSIYRVLYEGLKVEE 326
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 276 ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSI 317
+S +A + L +EL +RD G T +LDE GL F V+ +
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKL 847
>pdb|1UF0|A Chain A, Solution Structure Of The N-Terminal Dcx Domain Of Human
Doublecortin-Like Kinase
Length = 116
Score = 28.9 bits (63), Expect = 7.6, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 461 EASLAALSTVIDDGVDIEQGVMVLCEAQGIKPI--LDVLLE 499
EA LA L+ + D V++ QGV + G+K I LD L+E
Sbjct: 39 EALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVE 79
>pdb|1MG4|A Chain A, Structure Of N-Terminal Doublecortin Domain From Dclk:
Wild Type Protein
Length = 113
Score = 28.9 bits (63), Expect = 7.6, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 461 EASLAALSTVIDDGVDIEQGVMVLCEAQGIKPI--LDVLLE 499
EA LA L+ + D V++ QGV + G+K I LD L+E
Sbjct: 44 EALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVE 84
>pdb|3OC3|A Chain A, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
With Tbp
pdb|3OC3|B Chain B, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
With Tbp
Length = 800
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 378 QMVSATALENLSLESKNLTKLPEL--PPSGFCASIFPCFSKQPV 419
+++S + NLSL +K + PEL PP IFPCF+ PV
Sbjct: 347 ELISVSKTSNLSLLTKIYRENPELSIPPER-LKDIFPCFT-SPV 388
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,177,597
Number of Sequences: 62578
Number of extensions: 526327
Number of successful extensions: 1559
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1459
Number of HSP's gapped (non-prelim): 87
length of query: 572
length of database: 14,973,337
effective HSP length: 104
effective length of query: 468
effective length of database: 8,465,225
effective search space: 3961725300
effective search space used: 3961725300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)