Query 008257
Match_columns 572
No_of_seqs 218 out of 1859
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 21:30:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 7.7E-50 1.7E-54 459.6 47.3 484 3-561 66-681 (2102)
2 PLN03200 cellulose synthase-in 100.0 5E-49 1.1E-53 452.9 47.8 492 8-563 160-767 (2102)
3 KOG0166 Karyopherin (importin) 100.0 8.9E-42 1.9E-46 346.7 35.5 404 3-520 74-488 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 7.9E-41 1.7E-45 314.9 28.6 406 4-521 80-499 (526)
5 KOG4224 Armadillo repeat prote 100.0 4.1E-41 8.9E-46 319.3 20.5 428 3-519 93-523 (550)
6 KOG0166 Karyopherin (importin) 100.0 6.9E-35 1.5E-39 296.5 37.2 405 78-560 68-486 (514)
7 KOG4224 Armadillo repeat prote 100.0 3.3E-36 7.2E-41 286.0 24.5 404 36-518 85-493 (550)
8 COG5064 SRP1 Karyopherin (impo 100.0 3.9E-35 8.4E-40 276.5 26.3 408 77-560 72-496 (526)
9 PF05804 KAP: Kinesin-associat 100.0 2.2E-27 4.7E-32 255.1 34.3 385 11-475 265-652 (708)
10 PF05804 KAP: Kinesin-associat 100.0 9.7E-25 2.1E-29 234.8 39.0 466 7-560 134-649 (708)
11 KOG1048 Neural adherens juncti 99.9 3.3E-22 7.2E-27 210.1 25.6 417 38-529 235-695 (717)
12 KOG1048 Neural adherens juncti 99.8 1.4E-17 3E-22 175.5 23.5 380 79-564 236-688 (717)
13 KOG2122 Beta-catenin-binding p 99.8 4E-17 8.7E-22 178.2 24.3 363 2-392 204-603 (2195)
14 KOG1222 Kinesin associated pro 99.7 1.1E-13 2.4E-18 137.2 29.6 384 11-475 279-666 (791)
15 KOG4199 Uncharacterized conser 99.6 4.9E-13 1.1E-17 127.5 26.8 310 183-561 118-445 (461)
16 KOG2122 Beta-catenin-binding p 99.6 3.4E-14 7.3E-19 155.8 21.0 363 51-475 209-604 (2195)
17 KOG4199 Uncharacterized conser 99.6 1.2E-12 2.6E-17 124.8 28.7 354 13-473 77-445 (461)
18 PF10508 Proteasom_PSMB: Prote 99.6 4.2E-12 9.2E-17 135.8 35.2 403 4-519 47-463 (503)
19 PF10508 Proteasom_PSMB: Prote 99.6 7.2E-12 1.6E-16 134.1 35.1 422 79-569 41-472 (503)
20 KOG4500 Rho/Rac GTPase guanine 99.6 1.2E-12 2.5E-17 128.7 24.8 433 14-517 61-518 (604)
21 KOG1293 Proteins containing ar 99.5 5.7E-12 1.2E-16 130.3 28.9 492 4-560 18-533 (678)
22 PF04826 Arm_2: Armadillo-like 99.5 4E-13 8.6E-18 129.3 18.1 196 33-248 9-207 (254)
23 PRK09687 putative lyase; Provi 99.5 3.7E-12 8.1E-17 125.4 22.9 253 37-386 24-278 (280)
24 PF04826 Arm_2: Armadillo-like 99.5 1.7E-12 3.6E-17 125.0 19.6 190 77-292 13-205 (254)
25 PRK09687 putative lyase; Provi 99.5 5.7E-12 1.2E-16 124.1 23.0 257 116-515 22-279 (280)
26 PF01602 Adaptin_N: Adaptin N 99.5 3.7E-11 8E-16 131.0 31.4 429 4-560 51-483 (526)
27 KOG4500 Rho/Rac GTPase guanine 99.5 1.3E-10 2.7E-15 114.6 28.3 394 4-472 96-519 (604)
28 PRK13800 putative oxidoreducta 99.4 4E-11 8.7E-16 137.4 28.8 276 34-468 619-895 (897)
29 PRK13800 putative oxidoreducta 99.4 4.1E-11 9E-16 137.2 27.5 278 115-557 619-896 (897)
30 KOG1222 Kinesin associated pro 99.4 1.2E-10 2.7E-15 115.9 25.8 377 56-560 283-663 (791)
31 PF01602 Adaptin_N: Adaptin N 99.3 2.4E-09 5.2E-14 116.8 28.9 287 41-392 9-298 (526)
32 cd00020 ARM Armadillo/beta-cat 99.3 4.9E-11 1.1E-15 102.3 12.3 115 31-150 2-119 (120)
33 KOG2171 Karyopherin (importin) 99.2 9.1E-08 2E-12 105.7 35.1 466 4-561 13-505 (1075)
34 PTZ00429 beta-adaptin; Provisi 99.2 3E-07 6.5E-12 101.6 38.2 292 38-391 107-398 (746)
35 KOG2171 Karyopherin (importin) 99.1 5.5E-08 1.2E-12 107.3 30.0 403 4-517 127-545 (1075)
36 cd00020 ARM Armadillo/beta-cat 99.1 6.6E-10 1.4E-14 95.2 12.0 116 439-559 3-119 (120)
37 cd00256 VATPase_H VATPase_H, r 99.1 3.8E-08 8.3E-13 101.1 24.3 323 171-518 52-425 (429)
38 KOG0946 ER-Golgi vesicle-tethe 99.1 7.1E-08 1.5E-12 101.9 26.1 305 77-394 23-350 (970)
39 KOG0168 Putative ubiquitin fus 99.0 2.4E-07 5.1E-12 98.8 25.3 259 38-316 169-437 (1051)
40 KOG1293 Proteins containing ar 99.0 3.2E-07 6.9E-12 95.7 25.7 454 43-561 16-491 (678)
41 PTZ00429 beta-adaptin; Provisi 98.9 7.9E-06 1.7E-10 90.5 36.4 454 17-562 11-473 (746)
42 KOG2160 Armadillo/beta-catenin 98.9 1.2E-07 2.5E-12 93.1 16.8 187 87-343 94-281 (342)
43 KOG2160 Armadillo/beta-catenin 98.8 2E-07 4.3E-12 91.5 16.7 186 5-201 93-282 (342)
44 KOG2759 Vacuolar H+-ATPase V1 98.8 1.6E-05 3.5E-10 79.3 28.7 349 79-519 68-439 (442)
45 cd00256 VATPase_H VATPase_H, r 98.8 7.9E-06 1.7E-10 84.2 27.2 313 6-389 65-424 (429)
46 KOG0946 ER-Golgi vesicle-tethe 98.7 2.4E-06 5.2E-11 90.7 22.6 347 117-524 22-406 (970)
47 KOG0168 Putative ubiquitin fus 98.7 1.9E-06 4.1E-11 92.1 20.1 263 79-372 170-438 (1051)
48 KOG1062 Vesicle coat complex A 98.6 2.7E-05 5.9E-10 83.3 26.8 378 79-553 145-574 (866)
49 PF03224 V-ATPase_H_N: V-ATPas 98.6 7.7E-07 1.7E-11 89.9 15.0 217 7-237 69-305 (312)
50 PF03224 V-ATPase_H_N: V-ATPas 98.5 3.5E-06 7.6E-11 85.1 16.4 215 79-315 58-293 (312)
51 KOG3678 SARM protein (with ste 98.5 7.1E-06 1.5E-10 82.3 16.2 274 209-514 172-448 (832)
52 KOG2023 Nuclear transport rece 98.4 1.5E-05 3.2E-10 83.4 18.4 352 116-560 127-505 (885)
53 KOG1241 Karyopherin (importin) 98.4 0.00021 4.5E-09 76.3 26.8 257 230-560 187-477 (859)
54 TIGR02270 conserved hypothetic 98.4 4.5E-05 9.8E-10 79.0 21.8 242 37-391 55-297 (410)
55 PF00514 Arm: Armadillo/beta-c 98.3 1.1E-06 2.3E-11 59.5 5.1 40 349-389 1-40 (41)
56 TIGR02270 conserved hypothetic 98.3 0.00018 3.8E-09 74.7 23.3 152 171-388 53-205 (410)
57 PF05536 Neurochondrin: Neuroc 98.3 0.00042 9.2E-09 74.8 26.9 231 2-249 12-264 (543)
58 KOG2023 Nuclear transport rece 98.3 1.1E-05 2.3E-10 84.4 13.7 319 79-473 131-506 (885)
59 PF14664 RICTOR_N: Rapamycin-i 98.3 0.00055 1.2E-08 70.2 25.7 276 174-517 27-363 (371)
60 KOG3678 SARM protein (with ste 98.3 7.4E-05 1.6E-09 75.2 18.4 175 71-308 174-351 (832)
61 KOG4646 Uncharacterized conser 98.3 8.2E-06 1.8E-10 68.5 9.8 114 35-153 15-130 (173)
62 KOG1789 Endocytosis protein RM 98.2 0.011 2.3E-07 65.6 34.7 509 25-560 1416-2116(2235)
63 KOG2759 Vacuolar H+-ATPase V1 98.2 0.00026 5.7E-09 70.8 21.1 283 38-343 116-437 (442)
64 KOG1789 Endocytosis protein RM 98.2 0.00079 1.7E-08 74.0 24.5 332 11-372 1741-2142(2235)
65 KOG1241 Karyopherin (importin) 98.1 0.0038 8.2E-08 67.0 28.0 439 4-544 226-693 (859)
66 PF00514 Arm: Armadillo/beta-c 98.1 5.6E-06 1.2E-10 56.0 4.7 40 66-105 1-41 (41)
67 COG1413 FOG: HEAT repeat [Ener 98.0 0.004 8.7E-08 63.6 25.9 279 117-557 43-332 (335)
68 COG5215 KAP95 Karyopherin (imp 98.0 0.0048 1E-07 64.1 25.4 468 6-562 16-531 (858)
69 KOG1060 Vesicle coat complex A 98.0 0.002 4.4E-08 69.1 23.3 68 443-518 429-496 (968)
70 KOG1062 Vesicle coat complex A 98.0 0.009 1.9E-07 64.6 28.0 92 4-105 116-208 (866)
71 KOG0212 Uncharacterized conser 98.0 0.0032 6.8E-08 65.4 23.7 351 114-561 81-445 (675)
72 KOG4646 Uncharacterized conser 98.0 9.9E-05 2.2E-09 62.2 10.7 116 7-126 29-146 (173)
73 KOG1242 Protein containing ada 97.9 0.01 2.2E-07 62.7 27.4 341 38-473 98-445 (569)
74 KOG0213 Splicing factor 3b, su 97.9 0.0019 4.2E-08 68.8 20.6 258 42-391 805-1066(1172)
75 COG1413 FOG: HEAT repeat [Ener 97.9 0.013 2.8E-07 59.9 26.9 188 36-292 43-242 (335)
76 KOG1059 Vesicle coat complex A 97.9 0.0066 1.4E-07 64.8 24.1 220 171-472 143-365 (877)
77 PF13646 HEAT_2: HEAT repeats; 97.8 0.00013 2.7E-09 58.6 8.6 87 362-514 1-88 (88)
78 KOG0213 Splicing factor 3b, su 97.8 0.076 1.6E-06 57.2 30.5 251 219-561 801-1066(1172)
79 KOG1242 Protein containing ada 97.7 0.021 4.4E-07 60.5 25.7 404 47-560 28-444 (569)
80 COG5181 HSH155 U2 snRNP splice 97.7 0.0039 8.5E-08 65.2 19.6 256 41-391 609-871 (975)
81 PF13646 HEAT_2: HEAT repeats; 97.7 0.0002 4.3E-09 57.4 7.8 87 38-147 1-88 (88)
82 PF05536 Neurochondrin: Neuroc 97.6 0.0071 1.5E-07 65.5 21.0 202 172-392 5-215 (543)
83 KOG1060 Vesicle coat complex A 97.6 0.071 1.5E-06 57.8 27.2 208 79-343 38-245 (968)
84 KOG2973 Uncharacterized conser 97.5 0.015 3.3E-07 56.2 19.6 297 174-518 5-315 (353)
85 PF10165 Ric8: Guanine nucleot 97.5 0.0056 1.2E-07 64.8 18.6 243 3-248 40-339 (446)
86 KOG2973 Uncharacterized conser 97.5 0.023 4.9E-07 55.1 20.5 277 79-387 6-311 (353)
87 smart00185 ARM Armadillo/beta- 97.5 0.00026 5.6E-09 47.6 5.2 39 350-389 2-40 (41)
88 PF14664 RICTOR_N: Rapamycin-i 97.5 0.036 7.9E-07 57.0 23.1 333 19-390 8-364 (371)
89 KOG1061 Vesicle coat complex A 97.5 0.016 3.4E-07 62.8 20.5 178 79-285 124-301 (734)
90 KOG1517 Guanine nucleotide bin 97.4 0.0038 8.2E-08 69.1 15.6 204 261-517 512-731 (1387)
91 KOG1824 TATA-binding protein-i 97.4 0.056 1.2E-06 59.7 23.4 247 11-294 625-888 (1233)
92 smart00185 ARM Armadillo/beta- 97.4 0.00043 9.3E-09 46.4 5.2 37 209-245 4-40 (41)
93 PF12348 CLASP_N: CLASP N term 97.4 0.0017 3.8E-08 62.3 11.1 185 46-249 17-209 (228)
94 KOG1824 TATA-binding protein-i 97.3 0.14 3E-06 56.8 25.6 429 7-560 582-1036(1233)
95 KOG1517 Guanine nucleotide bin 97.3 0.0065 1.4E-07 67.3 15.7 224 280-560 487-732 (1387)
96 PF10165 Ric8: Guanine nucleot 97.3 0.0064 1.4E-07 64.4 15.4 277 96-392 1-339 (446)
97 KOG1059 Vesicle coat complex A 97.2 0.0089 1.9E-07 63.9 15.4 223 218-520 145-367 (877)
98 COG5181 HSH155 U2 snRNP splice 97.2 0.021 4.5E-07 60.1 17.5 343 121-569 608-958 (975)
99 KOG4413 26S proteasome regulat 97.2 0.041 8.8E-07 53.7 18.2 292 6-312 139-459 (524)
100 KOG1077 Vesicle coat complex A 97.2 0.076 1.7E-06 56.9 21.5 304 174-559 113-432 (938)
101 COG5215 KAP95 Karyopherin (imp 97.2 0.13 2.7E-06 54.0 22.4 291 219-560 135-437 (858)
102 KOG1077 Vesicle coat complex A 97.2 0.49 1.1E-05 51.0 28.8 261 79-389 149-432 (938)
103 KOG0212 Uncharacterized conser 97.1 0.063 1.4E-06 56.1 19.8 352 77-518 84-444 (675)
104 KOG2259 Uncharacterized conser 97.1 0.0061 1.3E-07 64.4 12.2 260 170-515 196-472 (823)
105 KOG0211 Protein phosphatase 2A 97.1 0.28 6E-06 54.7 25.5 412 49-560 250-664 (759)
106 KOG4413 26S proteasome regulat 97.0 0.13 2.9E-06 50.2 19.9 277 226-560 91-377 (524)
107 KOG2259 Uncharacterized conser 97.0 0.013 2.8E-07 62.1 13.6 239 218-522 199-443 (823)
108 KOG2734 Uncharacterized conser 97.0 0.13 2.8E-06 52.3 20.0 267 15-342 104-398 (536)
109 KOG1061 Vesicle coat complex A 97.0 0.067 1.4E-06 58.1 19.0 320 6-393 97-418 (734)
110 COG5231 VMA13 Vacuolar H+-ATPa 96.9 0.068 1.5E-06 52.0 16.9 256 224-518 156-428 (432)
111 PF13513 HEAT_EZ: HEAT-like re 96.8 0.0045 9.7E-08 44.6 6.1 54 50-103 1-55 (55)
112 COG5369 Uncharacterized conser 96.7 0.0054 1.2E-07 63.3 8.0 162 72-245 426-593 (743)
113 PF09759 Atx10homo_assoc: Spin 96.6 0.0093 2E-07 48.7 7.5 66 188-257 2-69 (102)
114 KOG2734 Uncharacterized conser 96.6 0.66 1.4E-05 47.4 21.5 266 194-518 106-400 (536)
115 PF13513 HEAT_EZ: HEAT-like re 96.5 0.0068 1.5E-07 43.7 5.4 54 330-388 2-55 (55)
116 COG5240 SEC21 Vesicle coat com 96.4 0.87 1.9E-05 48.1 21.8 325 7-389 202-554 (898)
117 COG5240 SEC21 Vesicle coat com 96.4 0.7 1.5E-05 48.7 20.6 280 183-559 275-554 (898)
118 PF09759 Atx10homo_assoc: Spin 96.3 0.015 3.2E-07 47.5 6.9 70 280-360 3-72 (102)
119 PF11698 V-ATPase_H_C: V-ATPas 96.2 0.012 2.7E-07 49.3 5.8 71 444-518 44-115 (119)
120 KOG1943 Beta-tubulin folding c 96.2 3.3 7.3E-05 47.1 26.3 217 77-316 341-593 (1133)
121 PF12348 CLASP_N: CLASP N term 96.1 0.21 4.7E-06 47.7 15.1 179 6-201 18-206 (228)
122 PF11841 DUF3361: Domain of un 96.1 0.28 6.1E-06 43.5 14.1 125 110-247 4-132 (160)
123 KOG1240 Protein kinase contain 96.0 0.31 6.7E-06 55.6 17.1 285 174-519 424-726 (1431)
124 KOG1058 Vesicle coat complex C 96.0 1.8 3.9E-05 47.3 21.8 319 79-519 137-464 (948)
125 PF05004 IFRD: Interferon-rela 95.9 0.86 1.9E-05 45.8 18.8 186 38-244 45-255 (309)
126 PF11841 DUF3361: Domain of un 95.9 0.084 1.8E-06 46.8 9.9 117 439-560 7-131 (160)
127 COG5096 Vesicle coat complex, 95.7 0.28 6E-06 54.3 15.4 167 226-472 28-195 (757)
128 COG5369 Uncharacterized conser 95.6 0.27 5.8E-06 51.3 13.5 134 14-152 408-546 (743)
129 KOG1078 Vesicle coat complex C 95.6 4.8 0.0001 44.3 30.4 361 87-571 183-548 (865)
130 KOG4535 HEAT and armadillo rep 95.5 0.16 3.5E-06 52.2 11.3 113 455-567 496-610 (728)
131 KOG3036 Protein involved in ce 95.4 0.53 1.2E-05 44.4 13.8 145 54-204 97-250 (293)
132 KOG1078 Vesicle coat complex C 95.4 1.8 4E-05 47.4 19.5 282 79-471 248-531 (865)
133 PF05004 IFRD: Interferon-rela 95.2 2 4.4E-05 43.1 18.5 206 174-392 45-259 (309)
134 COG5096 Vesicle coat complex, 95.2 0.5 1.1E-05 52.4 14.9 166 45-245 28-194 (757)
135 PF04078 Rcd1: Cell differenti 95.1 0.52 1.1E-05 45.2 12.9 154 229-392 7-170 (262)
136 PF02985 HEAT: HEAT repeat; I 94.9 0.042 9E-07 34.3 3.5 29 361-390 1-29 (31)
137 PF11698 V-ATPase_H_C: V-ATPas 94.8 0.086 1.9E-06 44.3 6.1 69 37-105 44-115 (119)
138 PF13764 E3_UbLigase_R4: E3 ub 94.7 10 0.00022 43.1 23.8 55 73-127 113-173 (802)
139 KOG3036 Protein involved in ce 94.6 0.86 1.9E-05 43.1 12.8 101 190-297 97-202 (293)
140 KOG4151 Myosin assembly protei 94.6 2.2 4.8E-05 47.0 17.7 241 108-387 495-738 (748)
141 KOG0567 HEAT repeat-containing 94.5 4.8 0.0001 38.7 21.2 90 263-388 189-278 (289)
142 PF12719 Cnd3: Nuclear condens 94.4 2 4.3E-05 43.1 16.2 169 36-229 26-209 (298)
143 PF07814 WAPL: Wings apart-lik 94.3 2.5 5.4E-05 43.6 16.9 252 38-309 23-316 (361)
144 COG5231 VMA13 Vacuolar H+-ATPa 94.2 2.2 4.8E-05 41.9 14.9 236 5-245 159-427 (432)
145 KOG4151 Myosin assembly protei 94.2 0.71 1.5E-05 50.7 13.0 232 261-557 504-738 (748)
146 PF08045 CDC14: Cell division 93.9 0.6 1.3E-05 45.0 10.6 97 53-152 108-208 (257)
147 PF02985 HEAT: HEAT repeat; I 93.9 0.1 2.3E-06 32.4 3.7 28 445-472 2-29 (31)
148 KOG0211 Protein phosphatase 2A 93.8 14 0.0003 41.6 25.2 411 8-517 250-663 (759)
149 PF12717 Cnd1: non-SMC mitotic 93.8 4.6 0.0001 36.9 16.2 92 329-473 2-93 (178)
150 KOG1240 Protein kinase contain 93.6 1.1 2.3E-05 51.5 13.1 301 31-392 414-727 (1431)
151 PF13764 E3_UbLigase_R4: E3 ub 93.0 16 0.00034 41.5 21.4 239 31-292 112-406 (802)
152 PF12755 Vac14_Fab1_bd: Vacuol 92.9 0.43 9.3E-06 38.8 6.9 69 443-518 27-96 (97)
153 PF08569 Mo25: Mo25-like; Int 92.8 0.85 1.8E-05 46.2 10.3 224 32-271 72-307 (335)
154 KOG0915 Uncharacterized conser 92.5 29 0.00064 41.5 23.9 315 41-395 823-1165(1702)
155 PF04063 DUF383: Domain of unk 92.5 1.5 3.2E-05 40.6 10.6 120 8-127 8-157 (192)
156 PF11701 UNC45-central: Myosin 92.4 1.1 2.4E-05 40.1 9.5 148 219-387 5-156 (157)
157 PF04078 Rcd1: Cell differenti 92.3 1.2 2.6E-05 42.8 9.9 101 190-297 68-173 (262)
158 KOG1788 Uncharacterized conser 92.2 23 0.0005 40.6 20.4 469 5-517 477-981 (2799)
159 PF12755 Vac14_Fab1_bd: Vacuol 91.7 0.62 1.3E-05 37.9 6.3 66 490-560 29-96 (97)
160 PF12719 Cnd3: Nuclear condens 91.2 6.1 0.00013 39.5 14.3 163 4-183 36-208 (298)
161 KOG4535 HEAT and armadillo rep 91.0 0.14 3.1E-06 52.5 2.4 189 90-292 405-603 (728)
162 PF12460 MMS19_C: RNAPII trans 90.8 3.9 8.4E-05 43.1 13.1 125 118-252 272-400 (415)
163 KOG0414 Chromosome condensatio 90.8 2.3 4.9E-05 48.9 11.5 158 79-274 922-1084(1251)
164 PF12717 Cnd1: non-SMC mitotic 90.7 1.7 3.7E-05 39.8 9.1 93 8-106 1-93 (178)
165 KOG1058 Vesicle coat complex C 90.6 2.7 5.8E-05 46.0 11.4 156 117-313 317-488 (948)
166 KOG0567 HEAT repeat-containing 90.3 9.6 0.00021 36.7 13.5 88 171-287 186-275 (289)
167 KOG2999 Regulator of Rac1, req 89.9 8.6 0.00019 40.8 14.0 155 79-247 86-243 (713)
168 KOG2999 Regulator of Rac1, req 89.2 8.6 0.00019 40.8 13.3 139 171-316 82-224 (713)
169 PF06371 Drf_GBD: Diaphanous G 89.1 2.6 5.6E-05 38.8 9.1 73 73-150 103-186 (187)
170 KOG1248 Uncharacterized conser 88.7 30 0.00064 40.3 18.2 225 5-249 664-901 (1176)
171 PF08045 CDC14: Cell division 88.0 5.9 0.00013 38.3 10.7 99 458-560 106-207 (257)
172 KOG1943 Beta-tubulin folding c 88.0 39 0.00084 39.0 18.2 159 217-390 341-500 (1133)
173 KOG1967 DNA repair/transcripti 87.6 3.9 8.5E-05 45.8 10.2 185 79-286 818-1018(1030)
174 PF12460 MMS19_C: RNAPII trans 87.5 41 0.00088 35.4 29.1 363 79-519 2-395 (415)
175 PF07814 WAPL: Wings apart-lik 87.4 21 0.00045 36.8 15.3 193 10-204 37-302 (361)
176 PF08569 Mo25: Mo25-like; Int 87.4 5.4 0.00012 40.5 10.6 144 6-154 134-286 (335)
177 PF05918 API5: Apoptosis inhib 86.9 6.6 0.00014 42.4 11.4 121 329-514 36-158 (556)
178 KOG2611 Neurochondrin/leucine- 86.4 37 0.0008 35.7 15.6 150 262-461 12-170 (698)
179 PF04063 DUF383: Domain of unk 86.4 2.9 6.4E-05 38.7 7.5 96 216-316 51-158 (192)
180 KOG0915 Uncharacterized conser 86.3 86 0.0019 37.9 25.8 71 37-109 999-1072(1702)
181 PF06371 Drf_GBD: Diaphanous G 86.1 5.6 0.00012 36.5 9.4 112 444-559 67-186 (187)
182 PF06025 DUF913: Domain of Unk 83.0 62 0.0013 33.6 17.2 171 283-498 4-206 (379)
183 PF05918 API5: Apoptosis inhib 83.0 15 0.00033 39.7 11.9 121 47-197 33-158 (556)
184 KOG1020 Sister chromatid cohes 82.7 24 0.00051 42.2 13.8 111 261-395 816-926 (1692)
185 PF11701 UNC45-central: Myosin 82.6 2.5 5.4E-05 37.8 5.1 91 13-103 61-157 (157)
186 KOG2025 Chromosome condensatio 82.1 39 0.00085 37.3 14.3 172 3-198 93-291 (892)
187 PF06025 DUF913: Domain of Unk 81.6 27 0.00059 36.2 13.0 102 261-372 106-208 (379)
188 KOG2062 26S proteasome regulat 80.3 17 0.00036 40.1 10.9 98 261-389 554-652 (929)
189 KOG1832 HIV-1 Vpr-binding prot 80.1 68 0.0015 36.4 15.4 130 170-305 599-785 (1516)
190 KOG1967 DNA repair/transcripti 80.0 17 0.00036 41.1 11.0 193 173-384 816-1018(1030)
191 PF14668 RICTOR_V: Rapamycin-i 79.8 8.5 0.00018 29.4 6.3 63 460-526 4-66 (73)
192 PF01347 Vitellogenin_N: Lipop 79.4 67 0.0014 35.8 16.3 203 118-381 396-613 (618)
193 PF11707 Npa1: Ribosome 60S bi 79.3 76 0.0017 32.2 17.1 172 262-475 57-240 (330)
194 KOG2611 Neurochondrin/leucine- 79.0 19 0.00041 37.7 10.4 136 175-315 14-162 (698)
195 PF14668 RICTOR_V: Rapamycin-i 78.5 14 0.00031 28.2 7.2 68 279-360 3-70 (73)
196 PRK14707 hypothetical protein; 78.4 2E+02 0.0043 36.5 31.9 464 6-557 176-652 (2710)
197 KOG2274 Predicted importin 9 [ 78.4 1.3E+02 0.0028 34.4 20.5 224 183-473 461-690 (1005)
198 KOG1566 Conserved protein Mo25 78.0 77 0.0017 31.5 15.1 229 30-270 73-309 (342)
199 PF08167 RIX1: rRNA processing 77.2 20 0.00044 32.3 9.3 110 444-560 26-143 (165)
200 COG5209 RCD1 Uncharacterized p 76.3 14 0.00029 34.7 7.7 103 93-202 117-219 (315)
201 KOG2062 26S proteasome regulat 76.0 13 0.00029 40.8 8.7 65 441-517 552-617 (929)
202 KOG0414 Chromosome condensatio 74.9 32 0.00069 40.1 11.6 128 328-517 936-1063(1251)
203 PF10363 DUF2435: Protein of u 74.4 8.1 0.00018 31.0 5.2 73 174-251 5-77 (92)
204 KOG3665 ZYG-1-like serine/thre 73.1 31 0.00066 38.9 11.2 200 286-516 494-695 (699)
205 KOG1248 Uncharacterized conser 72.9 67 0.0015 37.6 13.6 224 46-290 664-896 (1176)
206 smart00638 LPD_N Lipoprotein N 72.8 89 0.0019 34.5 14.9 209 79-341 314-542 (574)
207 COG5209 RCD1 Uncharacterized p 72.6 9.3 0.0002 35.8 5.7 104 279-391 116-219 (315)
208 PF12530 DUF3730: Protein of u 72.5 61 0.0013 31.1 11.8 146 220-390 3-151 (234)
209 KOG1991 Nuclear transport rece 72.2 99 0.0022 35.6 14.5 274 79-390 413-711 (1010)
210 COG5116 RPN2 26S proteasome re 71.9 13 0.00028 39.7 7.2 66 441-517 583-649 (926)
211 COG5098 Chromosome condensatio 70.7 15 0.00033 40.1 7.6 109 119-245 301-414 (1128)
212 PF12031 DUF3518: Domain of un 70.3 11 0.00025 35.8 5.9 80 50-129 138-228 (257)
213 KOG1820 Microtubule-associated 70.2 1E+02 0.0023 35.3 14.4 189 41-252 258-449 (815)
214 COG5116 RPN2 26S proteasome re 70.1 19 0.00041 38.5 8.0 65 441-517 549-614 (926)
215 KOG4653 Uncharacterized conser 69.6 57 0.0012 36.9 11.7 185 43-249 734-921 (982)
216 KOG2025 Chromosome condensatio 69.2 1.9E+02 0.0042 32.2 17.1 100 79-196 88-188 (892)
217 cd03568 VHS_STAM VHS domain fa 68.9 19 0.00042 31.6 6.9 74 171-246 36-110 (144)
218 PF11707 Npa1: Ribosome 60S bi 68.5 1.4E+02 0.003 30.3 15.2 164 78-247 58-238 (330)
219 PF08167 RIX1: rRNA processing 68.5 53 0.0011 29.6 9.8 108 37-152 26-144 (165)
220 cd03569 VHS_Hrs_Vps27p VHS dom 68.4 23 0.00049 31.1 7.2 73 443-517 41-113 (142)
221 cd03561 VHS VHS domain family; 68.2 27 0.00058 30.2 7.6 74 171-246 36-112 (133)
222 KOG1991 Nuclear transport rece 67.7 2.4E+02 0.0052 32.7 19.4 119 171-297 409-537 (1010)
223 PF08324 PUL: PUL domain; Int 67.1 25 0.00055 34.4 8.2 110 6-115 121-241 (268)
224 PF12031 DUF3518: Domain of un 66.9 12 0.00026 35.7 5.3 80 10-89 139-229 (257)
225 cd03567 VHS_GGA VHS domain fam 65.5 26 0.00055 30.6 6.8 73 171-245 37-115 (139)
226 COG5098 Chromosome condensatio 65.3 31 0.00067 37.9 8.5 121 445-570 301-425 (1128)
227 PF10363 DUF2435: Protein of u 64.7 23 0.00049 28.5 5.9 80 39-126 6-86 (92)
228 cd03569 VHS_Hrs_Vps27p VHS dom 63.5 29 0.00063 30.4 6.9 73 171-245 40-113 (142)
229 PF13251 DUF4042: Domain of un 63.4 95 0.0021 28.5 10.4 113 444-561 40-175 (182)
230 KOG3665 ZYG-1-like serine/thre 61.6 1.7E+02 0.0037 33.1 14.1 195 59-290 494-695 (699)
231 cd03568 VHS_STAM VHS domain fa 61.0 34 0.00075 30.0 6.9 69 37-105 38-110 (144)
232 KOG2933 Uncharacterized conser 59.8 58 0.0012 32.3 8.6 140 218-384 89-228 (334)
233 smart00288 VHS Domain present 59.5 26 0.00056 30.3 5.8 71 218-289 38-108 (133)
234 cd03561 VHS VHS domain family; 57.6 36 0.00077 29.4 6.4 72 218-290 38-110 (133)
235 PF11865 DUF3385: Domain of un 57.3 99 0.0021 27.7 9.4 141 38-197 12-153 (160)
236 COG5218 YCG1 Chromosome conden 56.7 70 0.0015 34.6 9.2 102 3-113 99-204 (885)
237 KOG2274 Predicted importin 9 [ 56.0 3.7E+02 0.008 31.0 20.1 155 77-247 530-690 (1005)
238 PF08324 PUL: PUL domain; Int 55.6 1.9E+02 0.0041 28.1 12.1 156 40-203 67-233 (268)
239 smart00288 VHS Domain present 55.3 52 0.0011 28.4 7.0 72 444-517 38-110 (133)
240 PF06685 DUF1186: Protein of u 54.2 1.5E+02 0.0032 28.8 10.5 121 171-315 30-160 (249)
241 cd03567 VHS_GGA VHS domain fam 53.8 57 0.0012 28.5 7.0 69 37-105 39-116 (139)
242 PF14663 RasGEF_N_2: Rapamycin 52.3 52 0.0011 27.6 6.3 31 444-474 9-39 (115)
243 PF08216 CTNNBL: Catenin-beta- 52.2 27 0.00058 28.9 4.3 37 93-129 63-99 (108)
244 KOG1832 HIV-1 Vpr-binding prot 52.2 48 0.001 37.5 7.4 71 185-257 675-782 (1516)
245 KOG1820 Microtubule-associated 51.8 2.3E+02 0.0049 32.6 12.9 183 80-290 257-441 (815)
246 smart00638 LPD_N Lipoprotein N 51.4 2.6E+02 0.0056 30.8 13.5 141 119-290 395-543 (574)
247 PF11791 Aconitase_B_N: Aconit 51.3 81 0.0018 27.8 7.3 25 534-558 97-121 (154)
248 KOG2137 Protein kinase [Signal 49.9 1.4E+02 0.003 33.2 10.4 122 4-129 398-520 (700)
249 KOG2956 CLIP-associating prote 49.0 3.2E+02 0.007 28.9 12.3 144 361-560 330-477 (516)
250 PF00790 VHS: VHS domain; Int 48.7 70 0.0015 27.8 6.9 72 444-517 43-117 (140)
251 KOG2137 Protein kinase [Signal 48.1 1.3E+02 0.0027 33.5 9.8 134 76-231 388-522 (700)
252 PF08506 Cse1: Cse1; InterPro 46.7 1.2E+02 0.0026 31.3 9.2 149 215-385 208-370 (370)
253 PF10521 DUF2454: Protein of u 45.8 1E+02 0.0022 30.5 8.3 31 118-153 120-150 (282)
254 PF11864 DUF3384: Domain of un 45.6 4.1E+02 0.0088 28.4 14.0 72 8-87 42-118 (464)
255 KOG2032 Uncharacterized conser 44.9 1.8E+02 0.0039 30.9 9.9 142 46-202 268-416 (533)
256 PF12830 Nipped-B_C: Sister ch 44.9 79 0.0017 29.1 6.9 65 444-517 9-73 (187)
257 KOG4653 Uncharacterized conser 43.6 5.6E+02 0.012 29.4 15.5 228 121-388 728-962 (982)
258 KOG1020 Sister chromatid cohes 42.8 1E+02 0.0022 37.3 8.5 106 442-560 815-921 (1692)
259 COG5218 YCG1 Chromosome conden 42.7 2.5E+02 0.0055 30.6 10.7 103 79-202 94-197 (885)
260 PF14225 MOR2-PAG1_C: Cell mor 42.3 3.4E+02 0.0073 26.5 14.3 173 117-316 60-239 (262)
261 PF14726 RTTN_N: Rotatin, an a 42.3 1.7E+02 0.0036 23.8 7.5 51 76-126 29-80 (98)
262 PF12530 DUF3730: Protein of u 41.7 3.2E+02 0.0069 26.1 17.4 143 38-202 2-152 (234)
263 PF08216 CTNNBL: Catenin-beta- 41.5 38 0.00082 28.0 3.6 41 12-52 63-103 (108)
264 PF13251 DUF4042: Domain of un 41.0 1.3E+02 0.0028 27.7 7.5 145 92-246 2-174 (182)
265 PF03130 HEAT_PBS: PBS lyase H 40.6 32 0.00069 20.4 2.4 26 138-182 1-26 (27)
266 PF00790 VHS: VHS domain; Int 39.5 33 0.00071 29.9 3.3 71 218-289 43-115 (140)
267 PF07923 N1221: N1221-like pro 39.0 60 0.0013 32.3 5.5 59 441-499 58-127 (293)
268 PF07923 N1221: N1221-like pro 38.7 69 0.0015 31.9 5.9 62 168-229 56-128 (293)
269 KOG2933 Uncharacterized conser 38.2 2.9E+02 0.0063 27.6 9.7 136 38-193 90-226 (334)
270 PRK14707 hypothetical protein; 36.5 1.1E+03 0.023 30.6 32.0 76 51-127 305-383 (2710)
271 KOG4231 Intracellular membrane 35.6 52 0.0011 34.8 4.4 67 79-150 331-398 (763)
272 KOG0301 Phospholipase A2-activ 35.4 4.5E+02 0.0099 29.2 11.3 120 7-130 600-729 (745)
273 PF11791 Aconitase_B_N: Aconit 35.1 28 0.00061 30.6 2.1 30 443-472 94-123 (154)
274 PF01347 Vitellogenin_N: Lipop 35.0 73 0.0016 35.4 6.1 178 79-290 398-587 (618)
275 cd00197 VHS_ENTH_ANTH VHS, ENT 35.0 1.6E+02 0.0035 24.4 6.8 72 171-244 36-113 (115)
276 KOG4231 Intracellular membrane 34.7 67 0.0014 34.0 5.0 68 493-560 332-399 (763)
277 KOG4464 Signaling protein RIC- 34.5 5.6E+02 0.012 26.8 14.1 79 51-129 112-199 (532)
278 KOG1243 Protein kinase [Genera 34.2 91 0.002 34.5 6.1 180 36-243 330-512 (690)
279 PF12726 SEN1_N: SEN1 N termin 33.4 5.5E+02 0.012 29.3 12.8 144 172-343 441-584 (727)
280 KOG2956 CLIP-associating prote 33.4 6.2E+02 0.013 26.9 16.0 144 79-245 332-476 (516)
281 PF14663 RasGEF_N_2: Rapamycin 32.9 1.1E+02 0.0024 25.6 5.3 39 77-115 9-47 (115)
282 smart00567 EZ_HEAT E-Z type HE 31.7 70 0.0015 19.1 3.0 28 137-183 2-29 (30)
283 PF12830 Nipped-B_C: Sister ch 31.6 2E+02 0.0042 26.4 7.3 67 173-247 9-75 (187)
284 KOG1243 Protein kinase [Genera 31.5 1.1E+02 0.0024 33.8 6.3 156 357-566 327-482 (690)
285 PF14726 RTTN_N: Rotatin, an a 31.5 2.4E+02 0.0053 22.9 6.8 68 170-241 28-95 (98)
286 PF11865 DUF3385: Domain of un 30.3 2E+02 0.0044 25.6 7.0 111 445-558 12-155 (160)
287 PF04499 SAPS: SIT4 phosphatas 29.9 2.5E+02 0.0054 30.2 8.6 71 171-245 20-91 (475)
288 PF06012 DUF908: Domain of Unk 29.8 1.1E+02 0.0024 31.0 5.8 59 93-153 239-299 (329)
289 KOG2032 Uncharacterized conser 29.2 4.7E+02 0.01 27.9 10.0 137 87-237 269-407 (533)
290 PF08389 Xpo1: Exportin 1-like 27.8 1.8E+02 0.0039 24.9 6.2 60 79-146 85-148 (148)
291 cd03572 ENTH_epsin_related ENT 27.2 3.9E+02 0.0085 22.7 8.6 69 491-560 41-119 (122)
292 cd03565 VHS_Tom1 VHS domain fa 26.6 2.6E+02 0.0057 24.3 6.8 73 171-245 37-114 (141)
293 cd03565 VHS_Tom1 VHS domain fa 25.5 2.1E+02 0.0046 24.9 6.0 59 6-64 50-114 (141)
294 PF08389 Xpo1: Exportin 1-like 25.0 4.3E+02 0.0093 22.4 11.2 107 444-555 27-148 (148)
295 KOG1087 Cytosolic sorting prot 24.8 1.7E+02 0.0038 31.1 6.2 73 443-517 38-111 (470)
296 PF06012 DUF908: Domain of Unk 23.7 3.8E+02 0.0082 27.2 8.4 72 54-125 240-324 (329)
297 PF14225 MOR2-PAG1_C: Cell mor 23.7 1.6E+02 0.0035 28.8 5.4 66 79-153 191-256 (262)
298 PF12074 DUF3554: Domain of un 23.1 7.9E+02 0.017 24.8 12.8 221 16-257 8-246 (339)
299 PF08506 Cse1: Cse1; InterPro 22.9 8.5E+02 0.018 25.1 12.1 92 87-196 266-370 (370)
300 PF04499 SAPS: SIT4 phosphatas 22.9 2.5E+02 0.0054 30.1 7.1 43 351-393 53-95 (475)
301 KOG0301 Phospholipase A2-activ 22.3 1.1E+03 0.024 26.3 17.1 169 41-228 549-727 (745)
302 cd03572 ENTH_epsin_related ENT 21.9 2.9E+02 0.0064 23.4 5.9 42 172-215 38-79 (122)
303 cd00197 VHS_ENTH_ANTH VHS, ENT 21.8 4.3E+02 0.0092 21.7 7.1 68 444-516 38-113 (115)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=7.7e-50 Score=459.57 Aligned_cols=484 Identities=19% Similarity=0.181 Sum_probs=398.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC---cchhHH-HHhhhH
Q 008257 3 SSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN---SDVKVL-VARTVG 78 (572)
Q Consensus 3 ~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~---~~~k~~-i~~~g~ 78 (572)
++.++++.+++.|+.+|.+|+..++|+..++..|+|+||+.+|++|+.+.|..||++|..++.+ ++++.. +...|+
T Consensus 66 lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~Ga 145 (2102)
T PLN03200 66 LLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGV 145 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCC
Confidence 5678999999999999999999999999999999999999999999999999999999999885 555644 455677
Q ss_pred -HHHHHhcccCC---HHHHHHHHHHHHHhhcCCCcH-HHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC
Q 008257 79 -SCLINIMKSGN---MQAREAALKALNQISSCEPSA-KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG 153 (572)
Q Consensus 79 -~~Lv~lL~s~~---~~~~~~A~~aL~~Ls~~~~~~-~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~ 153 (572)
|+|+.+|++++ ..+++.|+.+|+||+.+++++ +.++++|+||.|+++|++. ++.+|+.|+++|.+++.+.
T Consensus 146 Vp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~-----d~~lQ~eAa~aLa~Lass~ 220 (2102)
T PLN03200 146 VPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSG-----NSDAQANAASLLARLMMAF 220 (2102)
T ss_pred hHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHHcCC
Confidence 99999999874 235788899999999998885 5678999999999999864 3789999999999998764
Q ss_pred CCCCccccCCCccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCC--
Q 008257 154 HDFDSITVGPDNQTLVSEDIVHNLLHLISNT-GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ-- 230 (572)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~-~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-- 230 (572)
.+.. ..+...|+||.|+++|+++ ++.+|++|+++|.+++.++ .+.+..+++.||||+|++++.+++
T Consensus 221 ee~~--------~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s---~e~r~~Iv~aGgIp~LI~lL~sp~~e 289 (2102)
T PLN03200 221 ESSI--------SKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQS---KEAKQAIADAGGIPALINATVAPSKE 289 (2102)
T ss_pred hHHH--------HHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCC---HHHHHHHHHCCCHHHHHHHHhCcchh
Confidence 4322 3566789999999999864 5689999999999999875 368999999999999999998655
Q ss_pred -------HHHHHHHHHHHHHcCCCCCh-------------hH--------------------------------------
Q 008257 231 -------NDLRLASIELIQNLSPHMGH-------------EL-------------------------------------- 252 (572)
Q Consensus 231 -------~~v~~~a~~~L~~Ls~~~~~-------------~~-------------------------------------- 252 (572)
..++++|+|+|+|++.+... +.
T Consensus 290 ~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~ 369 (2102)
T PLN03200 290 FMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVK 369 (2102)
T ss_pred hhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHH
Confidence 34599999999998864111 00
Q ss_pred --------------HHH-------------HhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCC
Q 008257 253 --------------ADA-------------LRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEG 305 (572)
Q Consensus 253 --------------~~~-------------i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g 305 (572)
.+. +... ++++.||+||...+. +.|..+++.|++++.++.+.++.+++.|
T Consensus 370 Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~-daik~LV~LL~~~~~--evQ~~Av~aL~~L~~~~~e~~~aIi~~g 446 (2102)
T PLN03200 370 LLKPRDTKLVQERIIEALASLYGNAYLSRKLNHA-EAKKVLVGLITMATA--DVQEELIRALSSLCCGKGGLWEALGGRE 446 (2102)
T ss_pred HhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhc-cchhhhhhhhccCCH--HHHHHHHHHHHHHhCCCHHHHHHHHHcC
Confidence 000 1111 445556666666554 7899999999999998899999999999
Q ss_pred ChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHH
Q 008257 306 AFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATAL 385 (572)
Q Consensus 306 ~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL 385 (572)
++|.|+.+|.+. ...+++.++++|.+++.. +.+++..++++|+||+|+++|+++ ++.+|++|+|+|
T Consensus 447 gIp~LV~LL~s~----------s~~iQ~~A~~~L~nLa~~---ndenr~aIieaGaIP~LV~LL~s~-~~~iqeeAawAL 512 (2102)
T PLN03200 447 GVQLLISLLGLS----------SEQQQEYAVALLAILTDE---VDESKWAITAAGGIPPLVQLLETG-SQKAKEDSATVL 512 (2102)
T ss_pred cHHHHHHHHcCC----------CHHHHHHHHHHHHHHHcC---CHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 999999999862 345688999999999863 788899999999999999999998 999999999999
Q ss_pred HHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHH
Q 008257 386 ENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLA 465 (572)
Q Consensus 386 ~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~ 465 (572)
.|++.+..+ .+.++.++|+|+||+++|++++.++++.|++
T Consensus 513 ~NLa~~~~q----------------------------------------ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~ 552 (2102)
T PLN03200 513 WNLCCHSED----------------------------------------IRACVESAGAVPALLWLLKNGGPKGQEIAAK 552 (2102)
T ss_pred HHHhCCcHH----------------------------------------HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 999864321 1223447899999999999999999999999
Q ss_pred HHHHhhhcCccc----------------hh------------------hHHHHHhcCChHHHHHHHhhcCCHHHHHHHHH
Q 008257 466 ALSTVIDDGVDI----------------EQ------------------GVMVLCEAQGIKPILDVLLEKRTENLQRRAVW 511 (572)
Q Consensus 466 aL~~l~~~~~~~----------------~~------------------~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~ 511 (572)
+|++|..++... +. ........||++.|+++| .++++.+|+.|+|
T Consensus 553 AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL-~sgs~~ikk~Aa~ 631 (2102)
T PLN03200 553 TLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLL-SSSKEETQEKAAS 631 (2102)
T ss_pred HHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHH-cCCCHHHHHHHHH
Confidence 999996432210 00 011122479999999999 5999999999999
Q ss_pred HHHHHHcc-hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhccc
Q 008257 512 VVERILRT-DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKI 561 (572)
Q Consensus 512 ~l~~l~~~-~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~ 561 (572)
+|.+++.. .+....+...++++ +|+.+|++++.++++.|+|||.+|+..
T Consensus 632 iLsnL~a~~~d~~~avv~agaIp-PLV~LLss~~~~v~keAA~AL~nL~~~ 681 (2102)
T PLN03200 632 VLADIFSSRQDLCESLATDEIIN-PCIKLLTNNTEAVATQSARALAALSRS 681 (2102)
T ss_pred HHHHHhcCChHHHHHHHHcCCHH-HHHHHHhcCChHHHHHHHHHHHHHHhC
Confidence 99999954 66666777777776 999999999999999999999999963
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=5e-49 Score=452.88 Aligned_cols=492 Identities=17% Similarity=0.218 Sum_probs=402.1
Q ss_pred CHHHHHHHHHHHHhhccCcchH-HHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHh
Q 008257 8 NLLTVEKAEKTLANLEKCENNV-RQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINI 84 (572)
Q Consensus 8 ~~~~~~~A~~~L~~L~~~~~n~-~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~l 84 (572)
|..+++.|..+|.+|+.+++|+ ..++++|++++|+.+|+++++..|.+|+++|.+++. .++.+..+.+.|+ |.||++
T Consensus 160 d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~L 239 (2102)
T PLN03200 160 DKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKL 239 (2102)
T ss_pred hHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH
Confidence 4456777889999999988876 567899999999999999999999999999998887 4668888888888 999999
Q ss_pred cccC-CHHHHHHHHHHHHHhhcC-CCcHHHHHHcCChHHHHHHHhccCCC----CCCcchHHHHHHHHHHHHhcCCC---
Q 008257 85 MKSG-NMQAREAALKALNQISSC-EPSAKVLIHAGILPPLVKDLFTVGSN----HLPMRLKEVSATILANVVNSGHD--- 155 (572)
Q Consensus 85 L~s~-~~~~~~~A~~aL~~Ls~~-~~~~~~iv~~G~i~~Lv~lL~s~~~~----~~~~~~~~~aa~~L~nla~~~~~--- 155 (572)
|+++ ++.+|+.|+++|++|+++ +++++.++++||||+|++++.++..+ ..+..++++|+|+|+||+.+...
T Consensus 240 L~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~ 319 (2102)
T PLN03200 240 LGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALIL 319 (2102)
T ss_pred HccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHH
Confidence 9875 568999999999999985 56789999999999999999754200 01246799999999999874211
Q ss_pred --------CCc-------------------------cccCCC------------c-----------------------cc
Q 008257 156 --------FDS-------------------------ITVGPD------------N-----------------------QT 167 (572)
Q Consensus 156 --------~~~-------------------------~~~~~~------------~-----------------------~~ 167 (572)
.+. ..++.. . +.
T Consensus 320 ~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~ 399 (2102)
T PLN03200 320 YLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRK 399 (2102)
T ss_pred HHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHH
Confidence 000 000000 0 01
Q ss_pred cchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 008257 168 LVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH 247 (572)
Q Consensus 168 l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~ 247 (572)
+...++++.|++||...+.++|.+++++|.+++.++. +.+..|.+.|++|.|+++|.+++..+|+.|+++|++++.+
T Consensus 400 L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~---e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ 476 (2102)
T PLN03200 400 LNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKG---GLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDE 476 (2102)
T ss_pred HHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCH---HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 2234667788888888899999999999999998864 5788999999999999999999999999999999999976
Q ss_pred CChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcc
Q 008257 248 MGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRF 327 (572)
Q Consensus 248 ~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~ 327 (572)
.. +....+.+. |+||.|+++|.+++. +++..|+|+|+|++.++++++..+.++|++|+|+++|++.
T Consensus 477 nd-enr~aIiea-GaIP~LV~LL~s~~~--~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg---------- 542 (2102)
T PLN03200 477 VD-ESKWAITAA-GGIPPLVQLLETGSQ--KAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG---------- 542 (2102)
T ss_pred CH-HHHHHHHHC-CCHHHHHHHHcCCCH--HHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC----------
Confidence 43 333467777 999999999999886 8999999999999997777766666899999999999862
Q ss_pred hhhHHHHHHHHHHHHhccCCCChH---------------HHH---------------------HHHHcCchHHHHHHhcc
Q 008257 328 VTPFLEGLLSVLARVTFVLSDEPD---------------AIA---------------------LCCEHNLAALFIELLQS 371 (572)
Q Consensus 328 ~~~~~e~a~~aL~~l~~~~~~~~~---------------~~~---------------------~i~~~g~i~~Lv~lL~~ 371 (572)
....++.++++|.+++.. .+.+ .+. .....|++|.|++||++
T Consensus 543 d~~~q~~Aa~AL~nLi~~--~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~s 620 (2102)
T PLN03200 543 GPKGQEIAAKTLTKLVRT--ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSS 620 (2102)
T ss_pred CHHHHHHHHHHHHHHHhc--cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcC
Confidence 245578899999998642 1221 111 11246899999999999
Q ss_pred CCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHh
Q 008257 372 NGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIAL 451 (572)
Q Consensus 372 ~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~l 451 (572)
+ ++.+|+.|+|+|.+++....... -.++..|+||||+.+
T Consensus 621 g-s~~ikk~Aa~iLsnL~a~~~d~~----------------------------------------~avv~agaIpPLV~L 659 (2102)
T PLN03200 621 S-KEETQEKAASVLADIFSSRQDLC----------------------------------------ESLATDEIINPCIKL 659 (2102)
T ss_pred C-CHHHHHHHHHHHHHHhcCChHHH----------------------------------------HHHHHcCCHHHHHHH
Confidence 9 99999999999999976432211 126789999999999
Q ss_pred hcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCC
Q 008257 452 LDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPN 531 (572)
Q Consensus 452 L~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~ 531 (572)
|++++.+++..|++||.+++.... +++...+.+.|+|++|+++| .+++..+++.|+.+|++++.+.+.+.++...++
T Consensus 660 Lss~~~~v~keAA~AL~nL~~~~~--~~q~~~~v~~GaV~pL~~LL-~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~ 736 (2102)
T PLN03200 660 LTNNTEAVATQSARALAALSRSIK--ENRKVSYAAEDAIKPLIKLA-KSSSIEVAEQAVCALANLLSDPEVAAEALAEDI 736 (2102)
T ss_pred HhcCChHHHHHHHHHHHHHHhCCC--HHHHHHHHHcCCHHHHHHHH-hCCChHHHHHHHHHHHHHHcCchHHHHHHhcCc
Confidence 999999999999999999996442 23445678999999999999 589999999999999999999888988887777
Q ss_pred chHHHHHHhhcCCchhHHHHHHHHHhhcccCC
Q 008257 532 VSTALVDAFQHADYRTRQIAERALKHIDKIPN 563 (572)
Q Consensus 532 ~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~ 563 (572)
++ +|+++|++|+++.|+.|++||.+|++--.
T Consensus 737 I~-~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 737 IL-PLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HH-HHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 75 99999999999999999999999997433
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.9e-42 Score=346.72 Aligned_cols=404 Identities=17% Similarity=0.241 Sum_probs=345.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCcch--HHHHHHcCCcHHHHHHHcc-CCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH
Q 008257 3 SSKSENLLTVEKAEKTLANLEKCENN--VRQMAENGRLQPLLTQILE-GPQETKLSLAAFLGDLAL-NSDVKVLVARTVG 78 (572)
Q Consensus 3 ~~~s~~~~~~~~A~~~L~~L~~~~~n--~~~i~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~ 78 (572)
|..|+|+..+..|...++.|-+.+.| +..+...|.++.||..|.. .++..|.+|||+|.+++. +.+..+.+.+.|+
T Consensus 74 ~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~aga 153 (514)
T KOG0166|consen 74 ALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGA 153 (514)
T ss_pred HHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCc
Confidence 56789999888888888888765443 6777777999999999974 459999999999999998 6778888888888
Q ss_pred -HHHHHhcccCCHHHHHHHHHHHHHhhcCCCc-HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCC
Q 008257 79 -SCLINIMKSGNMQAREAALKALNQISSCEPS-AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDF 156 (572)
Q Consensus 79 -~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~-~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~ 156 (572)
|.|+.+|.|++.++++.|+|||.|++.+.+. |+.++++|+++||+.++.... +..+..+++|+|.|||.+....
T Consensus 154 vp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~----~~~~lRn~tW~LsNlcrgk~P~ 229 (514)
T KOG0166|consen 154 VPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSD----KLSMLRNATWTLSNLCRGKNPS 229 (514)
T ss_pred hHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcccc----chHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999998655 777889999999999997642 2468889999999999865311
Q ss_pred CccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHH
Q 008257 157 DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLA 236 (572)
Q Consensus 157 ~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 236 (572)
|++ +.+ ...+|.|..++.+.|+++...
T Consensus 230 -----------------------------P~~------------------~~v------~~iLp~L~~ll~~~D~~Vl~D 256 (514)
T KOG0166|consen 230 -----------------------------PPF------------------DVV------APILPALLRLLHSTDEEVLTD 256 (514)
T ss_pred -----------------------------CcH------------------HHH------HHHHHHHHHHHhcCCHHHHHH
Confidence 111 011 347999999999999999999
Q ss_pred HHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhh
Q 008257 237 SIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS 316 (572)
Q Consensus 237 a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~ 316 (572)
|+|++++|+++.++.+ +.+.+. |.++.||.+|.+++. .++.+|+++++|++.+++..++.++++|++|.|..++..
T Consensus 257 a~WAlsyLsdg~ne~i-q~vi~~-gvv~~LV~lL~~~~~--~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~ 332 (514)
T KOG0166|consen 257 ACWALSYLTDGSNEKI-QMVIDA-GVVPRLVDLLGHSSP--KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSS 332 (514)
T ss_pred HHHHHHHHhcCChHHH-HHHHHc-cchHHHHHHHcCCCc--ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhcc
Confidence 9999999999866555 566776 999999999999986 788999999999999999999999999999999999985
Q ss_pred hccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccC
Q 008257 317 IQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLT 396 (572)
Q Consensus 317 ~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~ 396 (572)
.. ...+++.|+|+++|++.+ ++++.+.++++|++|.|+.+|.++ ..+.|++||||+.|++.+..
T Consensus 333 s~---------~~~ikkEAcW~iSNItAG---~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~--- 396 (514)
T KOG0166|consen 333 SP---------KESIKKEACWTISNITAG---NQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGT--- 396 (514)
T ss_pred Cc---------chhHHHHHHHHHHHhhcC---CHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCC---
Confidence 22 233567799999999985 999999999999999999999999 89999999999999875432
Q ss_pred CCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCcc
Q 008257 397 KLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVD 476 (572)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~ 476 (572)
.+...++++.|+|+||+.+|.-.+.++...++.+|.++...++.
T Consensus 397 ------------------------------------~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 397 ------------------------------------PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEA 440 (514)
T ss_pred ------------------------------------HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence 13445799999999999999999999999999999999976652
Q ss_pred c-----hhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcch
Q 008257 477 I-----EQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTD 520 (572)
Q Consensus 477 ~-----~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~ 520 (572)
. ......|.++||+..+ +.|+.|.+++++++|..++.+++..+
T Consensus 441 ~~~~~~n~~~~~IEe~ggldki-E~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 441 EKNRGTNPLAIMIEEAGGLDKI-ENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred hccccccHHHHHHHHccChhHH-HHhhccccHHHHHHHHHHHHHhcCCC
Confidence 2 2356889999999999 56668999999999999999999653
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=7.9e-41 Score=314.86 Aligned_cols=406 Identities=18% Similarity=0.212 Sum_probs=336.6
Q ss_pred CCCCCHHHHHHHHHHHHhhccC--cchHHHHHHcCCcHHHHHHHc-cCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-
Q 008257 4 SKSENLLTVEKAEKTLANLEKC--ENNVRQMAENGRLQPLLTQIL-EGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG- 78 (572)
Q Consensus 4 ~~s~~~~~~~~A~~~L~~L~~~--~~n~~~i~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~- 78 (572)
+.|+|.+.+..|..-.+.+-+. ..-+..++++|++|.++.+|. ..+...+.+|||+|.|++. .....+.+.+.|+
T Consensus 80 l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AV 159 (526)
T COG5064 80 LFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAV 159 (526)
T ss_pred HhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCch
Confidence 5688999888888777666443 334788999999999999994 5567789999999999998 4455566677888
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCCc-HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCC
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEPS-AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFD 157 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~-~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~ 157 (572)
|.+|+||.+.+.++++.|+|||.|++.+.+. |+.+.++|++.|++.+|.+.. ....+-.++.|+|.||+.......
T Consensus 160 PlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~---~~ismlRn~TWtLSNlcRGknP~P 236 (526)
T COG5064 160 PLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA---IHISMLRNATWTLSNLCRGKNPPP 236 (526)
T ss_pred HHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc---chHHHHHHhHHHHHHhhCCCCCCC
Confidence 9999999999999999999999999998665 667779999999999998653 225778899999999987543211
Q ss_pred ccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHH
Q 008257 158 SITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLAS 237 (572)
Q Consensus 158 ~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a 237 (572)
+. ..| ..++|.|.+|+.+.|+++...|
T Consensus 237 -----------------------------~w----------------------~~i--sqalpiL~KLiys~D~evlvDA 263 (526)
T COG5064 237 -----------------------------DW----------------------SNI--SQALPILAKLIYSRDPEVLVDA 263 (526)
T ss_pred -----------------------------ch----------------------HHH--HHHHHHHHHHHhhcCHHHHHHH
Confidence 11 111 2368999999999999999999
Q ss_pred HHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhh
Q 008257 238 IELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSI 317 (572)
Q Consensus 238 ~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~ 317 (572)
+|++++|+++..+. .+.+... |..+.||++|.+++. .++.+|++.++|+..+++..++.++++|+++.+..+|.+.
T Consensus 264 ~WAiSYlsDg~~E~-i~avld~-g~~~RLvElLs~~sa--~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ 339 (526)
T COG5064 264 CWAISYLSDGPNEK-IQAVLDV-GIPGRLVELLSHESA--KIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP 339 (526)
T ss_pred HHHHHHhccCcHHH-HHHHHhc-CCcHHHHHHhcCccc--cccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh
Confidence 99999999885444 4567766 999999999999986 8899999999999999988989999999999999999874
Q ss_pred ccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCC
Q 008257 318 QLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTK 397 (572)
Q Consensus 318 ~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~ 397 (572)
+ +.++..+.|.+.+++.+ +.++.+.+++++.+|+|+++|.+. ...+|++|+||+.|......+.-
T Consensus 340 k----------e~irKEaCWTiSNITAG---nteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~P- 404 (526)
T COG5064 340 K----------ENIRKEACWTISNITAG---NTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRP- 404 (526)
T ss_pred h----------hhhhhhhheeecccccC---CHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCc-
Confidence 3 23466799999999985 899999999999999999999998 99999999999999875443211
Q ss_pred CCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc--
Q 008257 398 LPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV-- 475 (572)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~-- 475 (572)
...-++++.|+|+||.++|...+.++.+.++.++.++..-++
T Consensus 405 ------------------------------------D~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d 448 (526)
T COG5064 405 ------------------------------------DIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQD 448 (526)
T ss_pred ------------------------------------hHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHH
Confidence 122358899999999999999999999999999999986554
Q ss_pred ------cchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchh
Q 008257 476 ------DIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDD 521 (572)
Q Consensus 476 ------~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~ 521 (572)
+.......+.++||+..+..+- .+.+.++..+|-.+++++|..++
T Consensus 449 ~~~~~~nin~ya~~vE~Aggmd~I~~~Q-~s~n~~iy~KAYsIIe~fFgeeD 499 (526)
T COG5064 449 RLRYGKNINIYAVYVEKAGGMDAIHGLQ-DSVNRTIYDKAYSIIEKFFGEED 499 (526)
T ss_pred HHhccCCccHHHHHHHhcccHHHHHHhh-hccccHHHHHHHHHHHHHcccch
Confidence 1223356677799999998877 69999999999999999996543
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-41 Score=319.31 Aligned_cols=428 Identities=20% Similarity=0.234 Sum_probs=359.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHH
Q 008257 3 SSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCL 81 (572)
Q Consensus 3 ~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~L 81 (572)
.++|.|+.+++.|..++.||+.+-+|+-.+++-+++++|+.-+.....++|+.+..++++++..+++|..|+..|+ .+|
T Consensus 93 llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pl 172 (550)
T KOG4224|consen 93 LLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPL 172 (550)
T ss_pred HHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhh
Confidence 3688999999999999999999999999999999999999988888889999999999999999999999999999 999
Q ss_pred HHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCcccc
Q 008257 82 INIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITV 161 (572)
Q Consensus 82 v~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~ 161 (572)
.++-++.+..+|.+|..+|.||+...+|++.+|.+|++|.||.+|++++ +++|+++..++.|++-...
T Consensus 173 trLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d-----~dvqyycttaisnIaVd~~------- 240 (550)
T KOG4224|consen 173 TRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGD-----LDVQYYCTTAISNIAVDRR------- 240 (550)
T ss_pred HhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCC-----hhHHHHHHHHhhhhhhhHH-------
Confidence 9999999999999999999999999999999999999999999999863 8999999999999986432
Q ss_pred CCCccccchhh--hHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHH
Q 008257 162 GPDNQTLVSED--IVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIE 239 (572)
Q Consensus 162 ~~~~~~l~~~~--~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~ 239 (572)
+++.+...+ .||.|++|++++++.+|.+|.-+|.+++++.. .+..|.++|++|.+|+||+++.-......+.
T Consensus 241 --~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~----Yq~eiv~ag~lP~lv~Llqs~~~plilasVa 314 (550)
T KOG4224|consen 241 --ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE----YQREIVEAGSLPLLVELLQSPMGPLILASVA 314 (550)
T ss_pred --HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch----hhhHHHhcCCchHHHHHHhCcchhHHHHHHH
Confidence 224555555 99999999999999999999999999999975 3667889999999999999988777777788
Q ss_pred HHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhcc
Q 008257 240 LIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQL 319 (572)
Q Consensus 240 ~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~ 319 (572)
.++|++-+..++. .|.+. |++.+||++|+-++. +++|..|+.+|+||+..+..++..+.++|+||.+..++.+.
T Consensus 315 CIrnisihplNe~--lI~da-gfl~pLVrlL~~~dn-EeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~-- 388 (550)
T KOG4224|consen 315 CIRNISIHPLNEV--LIADA-GFLRPLVRLLRAGDN-EEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG-- 388 (550)
T ss_pred HHhhcccccCccc--ceecc-cchhHHHHHHhcCCc-hhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC--
Confidence 9999998876664 46666 999999999998885 57999999999999997888889999999999999999873
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCC
Q 008257 320 GETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLP 399 (572)
Q Consensus 320 ~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~ 399 (572)
..++++..-+++..++ -+.+.+..+.+.|++|.|+.++.+. +.+++-+||.||.|++.+..+.++..
T Consensus 389 --------pvsvqseisac~a~La----l~d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~v~~Yarvi 455 (550)
T KOG4224|consen 389 --------PVSVQSEISACIAQLA----LNDNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSDVEHYARVI 455 (550)
T ss_pred --------ChhHHHHHHHHHHHHH----hccccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhhhHHHHHHH
Confidence 2345666777777777 3677788999999999999999998 99999999999999998777665531
Q ss_pred CCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchh
Q 008257 400 ELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQ 479 (572)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~ 479 (572)
+ +. -|. ..|.-..|+++|.+.+.-+...+.+++..|..++.
T Consensus 456 E------------aw-----------d~P------------~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~---- 496 (550)
T KOG4224|consen 456 E------------AW-----------DHP------------VQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD---- 496 (550)
T ss_pred H------------Hh-----------cCc------------chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC----
Confidence 1 10 000 12233478999999888888889998888886543
Q ss_pred hHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257 480 GVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT 519 (572)
Q Consensus 480 ~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~ 519 (572)
+++..+++ +.| ++-+.+-.++++..++
T Consensus 497 -----------~~~~~~i~-~~d-dii~~~~~~~~r~~~~ 523 (550)
T KOG4224|consen 497 -----------LPLTAFIQ-SSD-DIIELLNDIVARDANN 523 (550)
T ss_pred -----------ccHHHHHh-Cch-hHHHHHHHHHHHhccC
Confidence 44556664 333 3335555566666544
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-35 Score=296.52 Aligned_cols=405 Identities=15% Similarity=0.187 Sum_probs=338.6
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhcCCCc--HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257 78 GSCLINIMKSGNMQAREAALKALNQISSCEPS--AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD 155 (572)
Q Consensus 78 ~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~--~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~ 155 (572)
.+.++..+.|+++..|..+...++.|.+.+.+ ....+..|.||.||..|... .++.+|..|||+|.|+|+++..
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~----~~~~lq~eAAWaLTnIAsgtse 143 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRD----DNPTLQFEAAWALTNIASGTSE 143 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccC----CChhHHHHHHHHHHHHhcCchh
Confidence 58899999999999999999999999986554 56666779999999999753 3488999999999999987654
Q ss_pred CCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCH-HHH
Q 008257 156 FDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQN-DLR 234 (572)
Q Consensus 156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~v~ 234 (572)
.. +.++..|++|.|+.|+.+++.+++++|+|+|.+++.++. ..|..+.++|++++|+.++...+. ...
T Consensus 144 ~T--------~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~---~~Rd~vl~~g~l~pLl~~l~~~~~~~~l 212 (514)
T KOG0166|consen 144 QT--------KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSP---DCRDYVLSCGALDPLLRLLNKSDKLSML 212 (514)
T ss_pred hc--------cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCCh---HHHHHHHhhcchHHHHHHhccccchHHH
Confidence 43 356778999999999999999999999999999999874 689999999999999999988875 789
Q ss_pred HHHHHHHHHcCCCC-ChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHH
Q 008257 235 LASIELIQNLSPHM-GHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSR 313 (572)
Q Consensus 235 ~~a~~~L~~Ls~~~-~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~l 313 (572)
+++.|+|+||+++. +..-.+.+. .++|.|..++.+.+. ++...|.|+|++|+.+.++..+++++.|++|.|+.+
T Consensus 213 Rn~tW~LsNlcrgk~P~P~~~~v~---~iLp~L~~ll~~~D~--~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~l 287 (514)
T KOG0166|consen 213 RNATWTLSNLCRGKNPSPPFDVVA---PILPALLRLLHSTDE--EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDL 287 (514)
T ss_pred HHHHHHHHHHHcCCCCCCcHHHHH---HHHHHHHHHHhcCCH--HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHH
Confidence 99999999999774 222223444 479999999999996 899999999999999999999999999999999999
Q ss_pred HhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhcc
Q 008257 314 VKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESK 393 (572)
Q Consensus 314 L~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~ 393 (572)
|.+.. ..++-.|+.++.+++.+ +..+.+.+++.|++|.|..+|...+.+.+|++|+|++.|+.....
T Consensus 288 L~~~~----------~~v~~PaLRaiGNIvtG---~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~ 354 (514)
T KOG0166|consen 288 LGHSS----------PKVVTPALRAIGNIVTG---SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQ 354 (514)
T ss_pred HcCCC----------cccccHHHhhccceeec---cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCH
Confidence 98732 22345799999999875 778888899999999999999954377799999999999976433
Q ss_pred ccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhc
Q 008257 394 NLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDD 473 (572)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~ 473 (572)
. +.-+++++|.+|+|+++|++++-+++..|++|++|++..
T Consensus 355 ~----------------------------------------qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 355 E----------------------------------------QIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred H----------------------------------------HHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 2 222478999999999999999999999999999999987
Q ss_pred CccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhh---------hhhhcCCCCchHHHHHHhhc-C
Q 008257 474 GVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDI---------AYEVSGDPNVSTALVDAFQH-A 543 (572)
Q Consensus 474 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~---------~~~~~~~~~~~~~Lv~ll~~-~ 543 (572)
+. .+....+++.|.|+++..+| .-.|..+...+..+|++|+...+. ...+...+|+. -++-|++ .
T Consensus 395 g~--~~qi~yLv~~giI~plcdlL-~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggld--kiE~LQ~he 469 (514)
T KOG0166|consen 395 GT--PEQIKYLVEQGIIKPLCDLL-TCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLD--KIENLQSHE 469 (514)
T ss_pred CC--HHHHHHHHHcCCchhhhhcc-cCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChh--HHHHhhccc
Confidence 65 45678999999999999999 688988889999999999866332 23455566664 5555654 5
Q ss_pred CchhHHHHHHHHHhhcc
Q 008257 544 DYRTRQIAERALKHIDK 560 (572)
Q Consensus 544 ~~~~~~~Aa~aL~~L~~ 560 (572)
+.++.++|-..+.+..-
T Consensus 470 n~~Iy~~A~~II~~yf~ 486 (514)
T KOG0166|consen 470 NEEIYKKAYKIIDTYFS 486 (514)
T ss_pred cHHHHHHHHHHHHHhcC
Confidence 56888888888877655
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-36 Score=286.00 Aligned_cols=404 Identities=17% Similarity=0.228 Sum_probs=341.0
Q ss_pred CCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHH
Q 008257 36 GRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI 114 (572)
Q Consensus 36 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv 114 (572)
..++|...++++.....|..+..++++++.+.++|..|.+.+| .+|+.-+.++..++|+++++|++||+..++|+..|.
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA 164 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIA 164 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhh
Confidence 3568888899999999999999999999999999999998877 777777777888999999999999999999999999
Q ss_pred HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHH
Q 008257 115 HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQ 194 (572)
Q Consensus 115 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~ 194 (572)
..|++.||+++-++.+ ..+|+++..+|.|+..+.+ +++.++..|.+|.||.+++++++++|..+..
T Consensus 165 ~sGaL~pltrLakskd-----irvqrnatgaLlnmThs~E---------nRr~LV~aG~lpvLVsll~s~d~dvqyyctt 230 (550)
T KOG4224|consen 165 RSGALEPLTRLAKSKD-----IRVQRNATGALLNMTHSRE---------NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTT 230 (550)
T ss_pred hccchhhhHhhcccch-----hhHHHHHHHHHHHhhhhhh---------hhhhhhccCCchhhhhhhccCChhHHHHHHH
Confidence 9999999999776653 7899999999999987543 3457888999999999999999999999999
Q ss_pred HHHHccCCCCccHHHHHHHHhcC--ChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhcc
Q 008257 195 VLVGLTSSPTTVLSVVSAIKSSG--ATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISE 272 (572)
Q Consensus 195 aL~~l~~~~~~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~ 272 (572)
++.+++-+. ..|+.+.+.+ .+|.||.|+++++++++..|.-+|++|+.+. +.+..+.+. |++|.+|++|++
T Consensus 231 aisnIaVd~----~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt--~Yq~eiv~a-g~lP~lv~Llqs 303 (550)
T KOG4224|consen 231 AISNIAVDR----RARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT--EYQREIVEA-GSLPLLVELLQS 303 (550)
T ss_pred HhhhhhhhH----HHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc--hhhhHHHhc-CCchHHHHHHhC
Confidence 999999875 4578888888 9999999999999999999999999999774 344567777 999999999988
Q ss_pred CCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHH
Q 008257 273 NVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDA 352 (572)
Q Consensus 273 ~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~ 352 (572)
+.. ..-.+.+.+|.|++-+. -+.-.++++|++.+||.+|+.. .+++++-.|...|++++.+ ...+
T Consensus 304 ~~~--plilasVaCIrnisihp-lNe~lI~dagfl~pLVrlL~~~---------dnEeiqchAvstLrnLAas---se~n 368 (550)
T KOG4224|consen 304 PMG--PLILASVACIRNISIHP-LNEVLIADAGFLRPLVRLLRAG---------DNEEIQCHAVSTLRNLAAS---SEHN 368 (550)
T ss_pred cch--hHHHHHHHHHhhccccc-CcccceecccchhHHHHHHhcC---------CchhhhhhHHHHHHHHhhh---hhhh
Confidence 874 66777888999998843 3436789999999999999862 3567788999999999963 7788
Q ss_pred HHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccC
Q 008257 353 IALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCS 432 (572)
Q Consensus 353 ~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 432 (572)
++.+++.|+||.+.+|+.++ +..+|.+-..+++.++.+..+
T Consensus 369 ~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~d~~-------------------------------------- 409 (550)
T KOG4224|consen 369 VSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALNDND-------------------------------------- 409 (550)
T ss_pred hHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhcccc--------------------------------------
Confidence 89999999999999999998 888998888888888765431
Q ss_pred ccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHh-cCChH-HHHHHHhhcCCHHHHHHHH
Q 008257 433 LKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCE-AQGIK-PILDVLLEKRTENLQRRAV 510 (572)
Q Consensus 433 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~-~g~i~-~L~~lL~~~~~~~~~~~a~ 510 (572)
.-++.+.|.++.|+.++.+.+++++..|+.||.||+.+-+++....+++-. .+||. .|+.++ .+.+-.++..+.
T Consensus 410 ---k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl-~S~~~tf~hia~ 485 (550)
T KOG4224|consen 410 ---KEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFL-ASHELTFRHIAR 485 (550)
T ss_pred ---HHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHH-hhhHHHHHHHHH
Confidence 224678999999999999999999999999999999875533322222211 25665 477888 477778888999
Q ss_pred HHHHHHHc
Q 008257 511 WVVERILR 518 (572)
Q Consensus 511 ~~l~~l~~ 518 (572)
|.+..+..
T Consensus 486 wTI~qLle 493 (550)
T KOG4224|consen 486 WTIQQLLE 493 (550)
T ss_pred HHHHHHHH
Confidence 99988874
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.9e-35 Score=276.48 Aligned_cols=408 Identities=16% Similarity=0.150 Sum_probs=337.9
Q ss_pred hHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCc--HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCC
Q 008257 77 VGSCLINIMKSGNMQAREAALKALNQISSCEPS--AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGH 154 (572)
Q Consensus 77 g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~--~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~ 154 (572)
..|.|.+-|.|++.+.|..|..-.+.+.+.+.+ .+.++++|.||.+|+++++. ...-++-.|+|+|.|+++...
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~----q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEI----QRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhc----chhHHHHHHHHHHhhhccCcc
Confidence 349999999999999999999988888875444 68889999999999999653 235678899999999998766
Q ss_pred CCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCH--H
Q 008257 155 DFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQN--D 232 (572)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~ 232 (572)
.+.+ .++..|+||.+++||.++..+++++++|+|.+++.++. ..|..+.++|++.+++.++.+.-. .
T Consensus 148 ~QTk--------vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~---~~RD~vL~~galeplL~ll~ss~~~is 216 (526)
T COG5064 148 QQTK--------VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSE---GCRDYVLQCGALEPLLGLLLSSAIHIS 216 (526)
T ss_pred cceE--------EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCch---hHHHHHHhcCchHHHHHHHHhccchHH
Confidence 5443 45667899999999999999999999999999999875 589999999999999999987654 7
Q ss_pred HHHHHHHHHHHcCCCC-ChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHH
Q 008257 233 LRLASIELIQNLSPHM-GHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIF 311 (572)
Q Consensus 233 v~~~a~~~L~~Ls~~~-~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv 311 (572)
+.+++.|+|+||+++. +..-...+. .++|.|.+++.+.+. ++-..|.|+|+.|+.+..+..+.+++.|..+.|+
T Consensus 217 mlRn~TWtLSNlcRGknP~P~w~~is---qalpiL~KLiys~D~--evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLv 291 (526)
T COG5064 217 MLRNATWTLSNLCRGKNPPPDWSNIS---QALPILAKLIYSRDP--EVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLV 291 (526)
T ss_pred HHHHhHHHHHHhhCCCCCCCchHHHH---HHHHHHHHHHhhcCH--HHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHH
Confidence 8899999999999763 222223444 369999999999886 8999999999999999888889999999999999
Q ss_pred HHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 008257 312 SRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLE 391 (572)
Q Consensus 312 ~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~ 391 (572)
.+|.+. ...++..++..+.++..+ +....+.+++.|+++.|-.+|.++ .+.+|++|+|++.|+...
T Consensus 292 ElLs~~----------sa~iqtPalR~vGNIVTG---~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAG 357 (526)
T COG5064 292 ELLSHE----------SAKIQTPALRSVGNIVTG---SDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAG 357 (526)
T ss_pred HHhcCc----------cccccCHHHHhhcCeeec---CccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccC
Confidence 999873 234466788889999875 555666789999999999999999 889999999999988643
Q ss_pred ccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhh
Q 008257 392 SKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVI 471 (572)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~ 471 (572)
.. +...++++++.||||+++|++.+-.++..|++|+.|..
T Consensus 358 nt----------------------------------------eqiqavid~nliPpLi~lls~ae~k~kKEACWAisNat 397 (526)
T COG5064 358 NT----------------------------------------EQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNAT 397 (526)
T ss_pred CH----------------------------------------HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 21 23345889999999999999999999999999999999
Q ss_pred hcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcch------------hhhhhhcCCCCchHHHHHH
Q 008257 472 DDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTD------------DIAYEVSGDPNVSTALVDA 539 (572)
Q Consensus 472 ~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~------------~~~~~~~~~~~~~~~Lv~l 539 (572)
.++....+....+++.|.|++|..+| +-.+..+-+-++.+++++.+.. .+...+..++++. .+-++
T Consensus 398 sgg~~~PD~iryLv~qG~IkpLc~~L-~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd-~I~~~ 475 (526)
T COG5064 398 SGGLNRPDIIRYLVSQGFIKPLCDLL-DVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMD-AIHGL 475 (526)
T ss_pred ccccCCchHHHHHHHccchhHHHHHH-hccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHH-HHHHh
Confidence 87765556678899999999999999 5777777788899999998541 1223333355664 66677
Q ss_pred hhcCCchhHHHHHHHHHhhcc
Q 008257 540 FQHADYRTRQIAERALKHIDK 560 (572)
Q Consensus 540 l~~~~~~~~~~Aa~aL~~L~~ 560 (572)
-.+.+..+..+|=.++...+.
T Consensus 476 Q~s~n~~iy~KAYsIIe~fFg 496 (526)
T COG5064 476 QDSVNRTIYDKAYSIIEKFFG 496 (526)
T ss_pred hhccccHHHHHHHHHHHHHcc
Confidence 778899999999999988763
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.96 E-value=2.2e-27 Score=255.12 Aligned_cols=385 Identities=19% Similarity=0.236 Sum_probs=318.1
Q ss_pred HHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCC
Q 008257 11 TVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGN 89 (572)
Q Consensus 11 ~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~ 89 (572)
..+.|..+|.||+.++.+...|++.|.+++|++.|.+++.++.+.++.+|.+|+...+||..+.+.|+ ++|++++.+++
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~ 344 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSEN 344 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCC
Confidence 55678899999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccc
Q 008257 90 MQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLV 169 (572)
Q Consensus 90 ~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~ 169 (572)
.+.+..|+++|.|||.+++.+..|++.|.||.|+.+|.. +..+..+..+|++|+..+. ....+.
T Consensus 345 ~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d-------~~~~~val~iLy~LS~dd~---------~r~~f~ 408 (708)
T PF05804_consen 345 EDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKD-------PNFREVALKILYNLSMDDE---------ARSMFA 408 (708)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC-------CchHHHHHHHHHHhccCHh---------hHHHHh
Confidence 999999999999999999999999999999999999974 4567889999999987543 223567
Q ss_pred hhhhHHHHHHHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 008257 170 SEDIVHNLLHLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHM 248 (572)
Q Consensus 170 ~~~~i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~ 248 (572)
..++||.+++++-+ +.++++..++..+.+++.++. +.+.|.+.||++.|++..-..... ..+++++|+|.|+
T Consensus 409 ~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r----naqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~ 481 (708)
T PF05804_consen 409 YTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR----NAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHD 481 (708)
T ss_pred hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH----HHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcC
Confidence 77899999998764 667788889999999999974 456788899999999987554332 2457999999987
Q ss_pred ChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcch
Q 008257 249 GHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFV 328 (572)
Q Consensus 249 ~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~ 328 (572)
+.. ...+. +.+..|++++.++++ .+....++|+|+||+..+....+.+.+.+.+|.|.++|.... ..
T Consensus 482 ~~~-k~~f~---~~i~~L~~~v~~~~~-ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~--------~~ 548 (708)
T PF05804_consen 482 GPL-KELFV---DFIGDLAKIVSSGDS-EEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGA--------SE 548 (708)
T ss_pred chH-HHHHH---HHHHHHHHHhhcCCc-HHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCC--------CC
Confidence 543 23333 479999999988775 689999999999999877677667778899999999997521 12
Q ss_pred hhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccC-CcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCC
Q 008257 329 TPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN-GLDKVQMVSATALENLSLESKNLTKLPELPPSGFC 407 (572)
Q Consensus 329 ~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~ 407 (572)
..++-.++..++.++ .|+.....+.+.|+++.|+++|+.. .+++...+.+.++..+..+....
T Consensus 549 dDl~LE~Vi~~gtla----~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr------------ 612 (708)
T PF05804_consen 549 DDLLLEVVILLGTLA----SDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR------------ 612 (708)
T ss_pred hHHHHHHHHHHHHHH----CCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH------------
Confidence 233334566666666 5999999999999999999999985 36788888888888887653211
Q ss_pred ccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc
Q 008257 408 ASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV 475 (572)
Q Consensus 408 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~ 475 (572)
.+-+-+.+++.-|++++++.|+.++..+=.+|-.++..++
T Consensus 613 ----------------------------~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 613 ----------------------------EVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred ----------------------------HHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 1113357788999999999999999999999998887654
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.95 E-value=9.7e-25 Score=234.76 Aligned_cols=466 Identities=17% Similarity=0.231 Sum_probs=347.5
Q ss_pred CCHHHHHHHHHHHHhhccCcchHHHHHHc-CCcHHHHHHHccC---CHHHHHHHHHHHHHhcc-----------------
Q 008257 7 ENLLTVEKAEKTLANLEKCENNVRQMAEN-GRLQPLLTQILEG---PQETKLSLAAFLGDLAL----------------- 65 (572)
Q Consensus 7 ~~~~~~~~A~~~L~~L~~~~~n~~~i~~~-g~i~~Lv~~L~~~---~~~~~~~aa~~L~~l~~----------------- 65 (572)
+|.....++...+..|+.+++|-..++.. -.+..|.+.|++. +.+.-.+-......++.
T Consensus 134 e~~~ek~~~~~~il~La~~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~~fH~~l~~~kiG~l~ 213 (708)
T PF05804_consen 134 EDIPEKIRGTSLILQLARNPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFSQFHPILAHYKIGSLC 213 (708)
T ss_pred cccHHHHHHHHHHHHHhCCcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHhccHHHHH
Confidence 45445677889999999999998887744 4566666777542 22222221111111111
Q ss_pred ----CcchhH-H-----HHh----------------hhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCCh
Q 008257 66 ----NSDVKV-L-----VAR----------------TVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGIL 119 (572)
Q Consensus 66 ----~~~~k~-~-----i~~----------------~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i 119 (572)
+.+.|+ . +.+ ..-+.+-.+++.. ......|...|.||+.+..+...|++.|+|
T Consensus 214 m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQ-eqLlrv~~~lLlNLAed~~ve~kM~~~~iV 292 (708)
T PF05804_consen 214 MEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQ-EQLLRVAFYLLLNLAEDPRVELKMVNKGIV 292 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcChHHHHHHHhcCCH
Confidence 111111 0 000 0012223333322 233457888999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHc
Q 008257 120 PPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGL 199 (572)
Q Consensus 120 ~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l 199 (572)
++|+++|++.+ .++...++..|.+|+....+ ...+...|+|+.|++++.++..+++..++++|+||
T Consensus 293 ~~Lv~~Ldr~n-----~ellil~v~fLkkLSi~~EN---------K~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NL 358 (708)
T PF05804_consen 293 SLLVKCLDREN-----EELLILAVTFLKKLSIFKEN---------KDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNL 358 (708)
T ss_pred HHHHHHHcCCC-----HHHHHHHHHHHHHHcCCHHH---------HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 99999998753 78999999999999865432 24577889999999999999999999999999999
Q ss_pred cCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHH
Q 008257 200 TSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKE 279 (572)
Q Consensus 200 ~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~ 279 (572)
+.++ ++|..|++.|.+|.|+.+|..++ .+..++.+|.+||.++. ....+..+ +++|.|+++|.+.++ ..+
T Consensus 359 Sfd~----~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~--~r~~f~~T-dcIp~L~~~Ll~~~~-~~v 428 (708)
T PF05804_consen 359 SFDP----ELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDE--ARSMFAYT-DCIPQLMQMLLENSE-EEV 428 (708)
T ss_pred CcCH----HHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHh--hHHHHhhc-chHHHHHHHHHhCCC-ccc
Confidence 9996 57999999999999999997654 66789999999997642 22355665 899999998866543 366
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHc
Q 008257 280 QAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEH 359 (572)
Q Consensus 280 ~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~ 359 (572)
...+++++.||+. ++.+.+.+++.|+++.|+...-..+ + + -.+..+.+++.+ ++..+..+.
T Consensus 429 ~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~---------D-~---lLlKlIRNiS~h---~~~~k~~f~-- 489 (708)
T PF05804_consen 429 QLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTR---------D-P---LLLKLIRNISQH---DGPLKELFV-- 489 (708)
T ss_pred cHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhcc---------c-H---HHHHHHHHHHhc---CchHHHHHH--
Confidence 7778899999998 6677789999999999998765411 1 1 244567788864 445555554
Q ss_pred CchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhh
Q 008257 360 NLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCL 439 (572)
Q Consensus 360 g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l 439 (572)
+.+..|+.++..+.+++...++..+|+|+...+.++.+ .+
T Consensus 490 ~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~----------------------------------------ll 529 (708)
T PF05804_consen 490 DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQ----------------------------------------LL 529 (708)
T ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHH----------------------------------------HH
Confidence 47888899998876888999999999998754322211 13
Q ss_pred hhccchHHHHHhhcC--CCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcC-CHHHHHHHHHHHHHH
Q 008257 440 LEGHAVEKLIALLDH--TNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKR-TENLQRRAVWVVERI 516 (572)
Q Consensus 440 ~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~~~~~~a~~~l~~l 516 (572)
.+.+.+|-|.++|.. ..++++..++..+++++.|+ ..+..+.++|-++.|+++|+..+ |+++.-..+.++.++
T Consensus 530 ~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~----~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~l 605 (708)
T PF05804_consen 530 QEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP----ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQL 605 (708)
T ss_pred HhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH----HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 367899999999964 45689999999999999874 46778899999999999996544 477888899999999
Q ss_pred HcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257 517 LRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK 560 (572)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~ 560 (572)
..|++.|..+....+++.-|++++++.++.+|+.|-.+|--+..
T Consensus 606 l~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 606 LFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred HcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999887766777799999999999999999999876654
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.90 E-value=3.3e-22 Score=210.10 Aligned_cols=417 Identities=17% Similarity=0.177 Sum_probs=300.3
Q ss_pred cHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcC---CCcHHH
Q 008257 38 LQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSC---EPSAKV 112 (572)
Q Consensus 38 i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~---~~~~~~ 112 (572)
++..+.+|.+.++.+|.+||..|.+++. +++.|..+.+.|+ |.||.+|++.+.++|.+|+++|+||... ++|+-.
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla 314 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA 314 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence 5677899999999999999999999988 7788999988877 9999999999999999999999999953 467888
Q ss_pred HHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcC--------
Q 008257 113 LIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNT-------- 184 (572)
Q Consensus 113 iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~-------- 184 (572)
|.+.|+||.++++|+... +.++++..+.+|+||++++. . ........++.|.+-...+
T Consensus 315 i~~~~Gv~~l~~~Lr~t~----D~ev~e~iTg~LWNLSS~D~-l---------K~~ii~~al~tLt~~vI~P~Sgw~~~~ 380 (717)
T KOG1048|consen 315 IKELNGVPTLVRLLRHTQ----DDEVRELITGILWNLSSNDA-L---------KMLIITSALSTLTDNVIIPHSGWEEEP 380 (717)
T ss_pred hhhcCChHHHHHHHHhhc----chHHHHHHHHHHhcccchhH-H---------HHHHHHHHHHHHHHhhcccccccCCCC
Confidence 999999999999998642 47999999999999988632 1 1223344555555444311
Q ss_pred ------ChhHHHHHHHHHHHccCCCCccHHHHHHHHhc-CChHHHHHHhc------CCCHHHHHHHHHHHHHcCCCCChh
Q 008257 185 ------GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSS-GATISLVQFVE------APQNDLRLASIELIQNLSPHMGHE 251 (572)
Q Consensus 185 ------~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~-g~i~~Lv~lL~------~~~~~v~~~a~~~L~~Ls~~~~~~ 251 (572)
+.++-.++.++|.|+++... +.|+.|+++ |.|..|+..++ ..|....++++++|+||+.....+
T Consensus 381 ~~~~~~~~~vf~n~tgcLRNlSs~~~---eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~E 457 (717)
T KOG1048|consen 381 APRKAEDSTVFRNVTGCLRNLSSAGQ---EAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAE 457 (717)
T ss_pred cccccccceeeehhhhhhccccchhH---HHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhh
Confidence 23445689999999998653 578888887 56888888876 224578999999999999764333
Q ss_pred HHHH----Hhcc-----cCChhhHHhhhccCCCChHH-HHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCC
Q 008257 252 LADA----LRGA-----VGQLGSLIRVISENVGISKE-QAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGE 321 (572)
Q Consensus 252 ~~~~----i~~~-----~g~l~~Lv~lL~~~~~~~~~-~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~ 321 (572)
+... +.+. .|...--++++..... +. ...-...+-.... .+.--++++...++.+.+.+|...+
T Consensus 458 vp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~--k~~~~~~~~~~pe~~~-~pkG~e~Lw~p~vVr~Yl~Ll~~s~--- 531 (717)
T KOG1048|consen 458 VPPKYRQVLANIARLPGVGPPAESVGCFGFKKR--KSDDNCDDLPIPERAT-APKGSEWLWHPSVVRPYLLLLALSK--- 531 (717)
T ss_pred cCHhhhhHhhcccccccCCCcccccccccchhh--hchhcccccCCccccc-CCCCceeeecHHHHHHHHHHHHHhc---
Confidence 2111 1111 0110012222222221 10 0000001111111 2222256777788888888887532
Q ss_pred CCCCcchhhHHHHHHHHHHHHhccCCC-ChHHHHHH-HHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCC
Q 008257 322 TRGSRFVTPFLEGLLSVLARVTFVLSD-EPDAIALC-CEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLP 399 (572)
Q Consensus 322 ~~~~~~~~~~~e~a~~aL~~l~~~~~~-~~~~~~~i-~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~ 399 (572)
...+.|++++||-+++...-. ....+..+ .++.++|++++||+.+ ++.|.+.++.+|.||+.+..+..
T Consensus 532 ------n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~rnk~--- 601 (717)
T KOG1048|consen 532 ------NDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDIRNKE--- 601 (717)
T ss_pred ------chHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCchhhh---
Confidence 345689999999999875111 11234444 7889999999999999 99999999999999987643321
Q ss_pred CCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCC------CHhHHHHHHHHHHHhhhc
Q 008257 400 ELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHT------NEKVVEASLAALSTVIDD 473 (572)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~------~~~v~~~A~~aL~~l~~~ 473 (572)
++..++++-||+.|.+. ++++...++.+|.++...
T Consensus 602 ---------------------------------------ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~ 642 (717)
T KOG1048|consen 602 ---------------------------------------LIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK 642 (717)
T ss_pred ---------------------------------------hhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH
Confidence 34467999999999653 368999999999999976
Q ss_pred CccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCC
Q 008257 474 GVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGD 529 (572)
Q Consensus 474 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 529 (572)
.. .++..+.+.+|++.|+-+.+...++..-+.|...+..+=.+.+.+..+...
T Consensus 643 ~~---~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh~~~kk~ 695 (717)
T KOG1048|consen 643 NV---LNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELHFKLKKK 695 (717)
T ss_pred hH---HHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhhHhhh
Confidence 54 457789999999999988875556788788888888887778888777664
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.79 E-value=1.4e-17 Score=175.48 Aligned_cols=380 Identities=16% Similarity=0.162 Sum_probs=271.0
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCC-cHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCC
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEP-SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFD 157 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~-~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~ 157 (572)
|--|.||.+.++.+|-+|+.-+..++..+. .+..+-..|+||.||.+|.+.. .+++..|+++|.||+-....
T Consensus 236 pe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~-----~evq~~acgaLRNLvf~~~~-- 308 (717)
T KOG1048|consen 236 PEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRN-----DEVQRQACGALRNLVFGKST-- 308 (717)
T ss_pred HHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCc-----HHHHHHHHHHHHhhhcccCC--
Confidence 888999999999999999999999997544 4666779999999999998753 78899999999999754321
Q ss_pred ccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcC-CCHHHHHH
Q 008257 158 SITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA-PQNDLRLA 236 (572)
Q Consensus 158 ~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~ 236 (572)
+.++-+|.+++||+.++++|+. .|.++++.
T Consensus 309 -------------------------------------------------~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~ 339 (717)
T KOG1048|consen 309 -------------------------------------------------DSNKLAIKELNGVPTLVRLLRHTQDDEVREL 339 (717)
T ss_pred -------------------------------------------------cccchhhhhcCChHHHHHHHHhhcchHHHHH
Confidence 1235677899999999999986 67899999
Q ss_pred HHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC------------ChHHHHHHHHHHhcCCCCcHHHHHHHHhC
Q 008257 237 SIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG------------ISKEQAAAVGLLAELPERDLGLTRQMLDE 304 (572)
Q Consensus 237 a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~------------~~~~~~~A~~~L~~L~~~~~~~~~~l~~~ 304 (572)
...+|+||++++ .+...+.. .++..|-.-+-.+.+ ..++-..+.++|+|+++...+.++.+.++
T Consensus 340 iTg~LWNLSS~D--~lK~~ii~--~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c 415 (717)
T KOG1048|consen 340 ITGILWNLSSND--ALKMLIIT--SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMREC 415 (717)
T ss_pred HHHHHhcccchh--HHHHHHHH--HHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhc
Confidence 999999999873 22223333 256666555443321 12456788999999999888888888766
Q ss_pred -CChHHHHHHHhhhc-cCCCCCCcchhhHHHHHHHHHHHHhccCC--------------------CCh---------HHH
Q 008257 305 -GAFGLIFSRVKSIQ-LGETRGSRFVTPFLEGLLSVLARVTFVLS--------------------DEP---------DAI 353 (572)
Q Consensus 305 -g~l~~Lv~lL~~~~-~~~~~~~~~~~~~~e~a~~aL~~l~~~~~--------------------~~~---------~~~ 353 (572)
|.|..|+..+++.- ... .+..-.|+++..|.++.-.+. ..+ ..+
T Consensus 416 ~GLIdaL~~~iq~~i~~~~-----~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~ 490 (717)
T KOG1048|consen 416 DGLIDALLFSIQTAIQKSD-----LDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKR 490 (717)
T ss_pred cchHHHHHHHHHHHHHhcc-----ccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhh
Confidence 88999999998521 111 233347899999988863321 000 001
Q ss_pred HH---------------------HHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccc
Q 008257 354 AL---------------------CCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFP 412 (572)
Q Consensus 354 ~~---------------------i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~ 412 (572)
+. +...-++.+...+|.-..++.+.+.+|.||.|++.........
T Consensus 491 k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~-------------- 556 (717)
T KOG1048|consen 491 KSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEY-------------- 556 (717)
T ss_pred hchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhH--------------
Confidence 10 0111134454555554347788899999999987543222110
Q ss_pred cccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHH
Q 008257 413 CFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKP 492 (572)
Q Consensus 413 ~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~ 492 (572)
++..+ +....+.++|++||+..++.|+..++.+|.||+.|. .....| .-++|+.
T Consensus 557 --------------------~~~~v-~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~----rnk~li-gk~a~~~ 610 (717)
T KOG1048|consen 557 --------------------MRGAV-FRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI----RNKELI-GKYAIPD 610 (717)
T ss_pred --------------------HHhhh-hhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc----hhhhhh-hcchHHH
Confidence 00111 357789999999999999999999999999999874 233444 4789999
Q ss_pred HHHHHhhcCC-----HHHHHHHHHHHHHHH-cchhhhhhhcCCCCchHHHHHHhhcCC-chhHHHHHHHHHhhcccCCC
Q 008257 493 ILDVLLEKRT-----ENLQRRAVWVVERIL-RTDDIAYEVSGDPNVSTALVDAFQHAD-YRTRQIAERALKHIDKIPNF 564 (572)
Q Consensus 493 L~~lL~~~~~-----~~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~Lv~ll~~~~-~~~~~~Aa~aL~~L~~~~~~ 564 (572)
|++.|.+++. ++.-..+...|.++. .+.++.+.+...+++. .|+-+.++.. +.+-+.|+..|..|=.+.+.
T Consensus 611 lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~-kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eL 688 (717)
T KOG1048|consen 611 LVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIP-KLRLISKSQHSPKEFKAASSVLDVLWQYKEL 688 (717)
T ss_pred HHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChH-HHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999976555 566666777788888 5577777877778886 8888887744 57777888777766554443
No 13
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.77 E-value=4e-17 Score=178.18 Aligned_cols=363 Identities=14% Similarity=0.137 Sum_probs=273.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCC---HHHHHHHHHHHHHhcc-C-cchh--HHHH
Q 008257 2 TSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGP---QETKLSLAAFLGDLAL-N-SDVK--VLVA 74 (572)
Q Consensus 2 ~~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~---~~~~~~aa~~L~~l~~-~-~~~k--~~i~ 74 (572)
.|+-..|.+- -.+-+..|+.+++....|+..|+++-|+++|.-.. .+.+..|-.+|.|+.+ . |+.+ +.+.
T Consensus 204 sml~t~D~ee---~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~k 280 (2195)
T KOG2122|consen 204 SMLGTDDEEE---MARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKK 280 (2195)
T ss_pred hhcccCCHHH---HHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHH
Confidence 3555666542 33556677888999999999999999999997543 4567888899999987 3 2322 1111
Q ss_pred hhh--------HHHHHHhcccC--------CHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccC-------C
Q 008257 75 RTV--------GSCLINIMKSG--------NMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVG-------S 131 (572)
Q Consensus 75 ~~g--------~~~Lv~lL~s~--------~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~-------~ 131 (572)
-.- ...+..+|... +....+.|+.+|.+++-++++|..|-+.|++..+-+||.-.+ -
T Consensus 281 vL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tn 360 (2195)
T KOG2122|consen 281 VLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETN 360 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCC
Confidence 111 13333444432 122345899999999999999999999999999999885321 0
Q ss_pred CCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccc-hhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHH
Q 008257 132 NHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLV-SEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVV 210 (572)
Q Consensus 132 ~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~-~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~ 210 (572)
+.....++.+|..+|.||..++..... .+. ..|++..+|.-|.+...++++-.+.+|.||+...+. ..+
T Consensus 361 d~~~~aLRrYa~MALTNLTFGDv~NKa--------~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~--nmK 430 (2195)
T KOG2122|consen 361 DGECNALRRYAGMALTNLTFGDVANKA--------TLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADS--NMK 430 (2195)
T ss_pred cHHHHHHHHHHHHHhhccccccccchh--------hhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccc--cHH
Confidence 112347899999999999877654322 233 478999999999999999999999999999987553 467
Q ss_pred HHHHhcCChHHHHHH-hcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC--ChHHHHHHHHHH
Q 008257 211 SAIKSSGATISLVQF-VEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG--ISKEQAAAVGLL 287 (572)
Q Consensus 211 ~~i~~~g~i~~Lv~l-L~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~--~~~~~~~A~~~L 287 (572)
+.+.+.|-+..|+.. ++...+......+.+||||+.|...+- ..|+..+|++..||.+|..... .-.+-..|-++|
T Consensus 431 kvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNK-A~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGIL 509 (2195)
T KOG2122|consen 431 KVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENK-AEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGIL 509 (2195)
T ss_pred HHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccc-hhhhcccchHHHHHhhccccCCcchhhhhhcCccHH
Confidence 888899999988864 445555567778899999998743332 2566656999999999998743 125666777888
Q ss_pred hcCCC---CcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHH
Q 008257 288 AELPE---RDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAAL 364 (572)
Q Consensus 288 ~~L~~---~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~ 364 (572)
.|.+. ....+++.+.+.+.|..|+..|++. .--+..++.|+||||... +++-++.+.+.|++|.
T Consensus 510 RNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~----------SLTiVSNaCGTLWNLSAR---~p~DQq~LwD~gAv~m 576 (2195)
T KOG2122|consen 510 RNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH----------SLTIVSNACGTLWNLSAR---SPEDQQMLWDDGAVPM 576 (2195)
T ss_pred HHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc----------ceEEeecchhhhhhhhcC---CHHHHHHHHhcccHHH
Confidence 77543 3567888999999999999999873 223467899999999874 9999999999999999
Q ss_pred HHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 008257 365 FIELLQSNGLDKVQMVSATALENLSLES 392 (572)
Q Consensus 365 Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~ 392 (572)
|-.|+.+. ...+-.-++.||.|+..+-
T Consensus 577 LrnLIhSK-hkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 577 LRNLIHSK-HKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHHHHhhh-hhhhhhhHHHHHHHHhcCC
Confidence 99999998 7778888999999986544
No 14
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.1e-13 Score=137.20 Aligned_cols=384 Identities=16% Similarity=0.178 Sum_probs=288.5
Q ss_pred HHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCC
Q 008257 11 TVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGN 89 (572)
Q Consensus 11 ~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~ 89 (572)
..+.|...|.||+.+-.--.+|+....+.-||+.|..++-+.-......|..++..++||....+.|+ ..|+++..+.+
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h 358 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQH 358 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCC
Confidence 45678899999999887888899999999999999999988888888999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccc
Q 008257 90 MQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLV 169 (572)
Q Consensus 90 ~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~ 169 (572)
++.+...+..|.||+-+..++..||..|.+|.|+.+|.+. .-+.-|..+|+.++.++. -...+.
T Consensus 359 ~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d-------~~~~iA~~~lYh~S~dD~---------~K~Mfa 422 (791)
T KOG1222|consen 359 PDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD-------TKHGIALNMLYHLSCDDD---------AKAMFA 422 (791)
T ss_pred HHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCc-------ccchhhhhhhhhhccCcH---------HHHHHH
Confidence 9999999999999999999999999999999999999762 346779999999976432 113567
Q ss_pred hhhhHHHHHHHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHH-hcCCCHHHHHHHHHHHHHcCCC
Q 008257 170 SEDIVHNLLHLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQF-VEAPQNDLRLASIELIQNLSPH 247 (572)
Q Consensus 170 ~~~~i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~a~~~L~~Ls~~ 247 (572)
...+|+.+++.+-+ .+.++-...+....++|-+..+ .+.+++..|+..|.+. +++.++- -.+.+++++.|
T Consensus 423 yTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN----aQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqH 494 (791)
T KOG1222|consen 423 YTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN----AQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQH 494 (791)
T ss_pred HHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc----ceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhc
Confidence 78899999987765 4556665555555688877643 4567788888888764 3444432 24678999999
Q ss_pred CChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcc
Q 008257 248 MGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRF 327 (572)
Q Consensus 248 ~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~ 327 (572)
++..- ..+.. .+..|.+.+.+.++ +..-...+++++||.-.+-.-.+.+.+...+|++-..|+... .+
T Consensus 495 eg~tq-n~Fid---yvgdLa~i~~nd~~-E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga-------~e 562 (791)
T KOG1222|consen 495 EGATQ-NMFID---YVGDLAGIAKNDNS-ESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGA-------DE 562 (791)
T ss_pred cchHH-HHHHH---HHHHHHHHhhcCch-HHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCc-------cc
Confidence 76442 23332 57889999988876 467788999999998877777677888999999999987521 12
Q ss_pred hhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCC-cHHHHHHHHHHHHHhhhhccccCCCCCCCCCCC
Q 008257 328 VTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNG-LDKVQMVSATALENLSLESKNLTKLPELPPSGF 406 (572)
Q Consensus 328 ~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~ 406 (572)
+.-+.+ .+-++.-.+ .+......+..+|+||.|++||+... +++.-..-......+..+.. ++
T Consensus 563 ddLvL~-~vi~~GT~a----~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~--tr--------- 626 (791)
T KOG1222|consen 563 DDLVLQ-IVIACGTMA----RDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHEL--TR--------- 626 (791)
T ss_pred hhhhhH-HHHHhhhhh----hhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH--HH---------
Confidence 222232 334444444 37778888899999999999999752 44544333333333333211 00
Q ss_pred CccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc
Q 008257 407 CASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV 475 (572)
Q Consensus 407 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~ 475 (572)
...+-+...=.-|++|++..+.+++...=.+|-.++.++.
T Consensus 627 -----------------------------~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~ 666 (791)
T KOG1222|consen 627 -----------------------------RLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDK 666 (791)
T ss_pred -----------------------------HHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhH
Confidence 0011122233569999999999998888888888886654
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=4.9e-13 Score=127.49 Aligned_cols=310 Identities=12% Similarity=0.137 Sum_probs=226.6
Q ss_pred cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHHcCCCCChhHHHHHhccc
Q 008257 183 NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP--QNDLRLASIELIQNLSPHMGHELADALRGAV 260 (572)
Q Consensus 183 ~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~ 260 (572)
+++..+-.+++.+|..++.... .+.++.|...++.+|..+ +.++-......+..-+-.. +-..+.+++.
T Consensus 118 ~~~~~~l~ksL~al~~lt~~qp-------dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h-E~nrQ~~m~~- 188 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLTHKQP-------DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH-EVNRQLFMEL- 188 (461)
T ss_pred CCchhHHHHHHHHHHHhhcCCc-------chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh-HHHHHHHHHh-
Confidence 4455566678888888877643 244789999999999654 3456555555554444221 2223456776
Q ss_pred CChhhHHhhhccCCCChHHHHHHHHHHhcCCCCc---------HHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhH
Q 008257 261 GQLGSLIRVISENVGISKEQAAAVGLLAELPERD---------LGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPF 331 (572)
Q Consensus 261 g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~---------~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~ 331 (572)
+.++.+.+.|..... ...-.++.++++-+...| .++.+.+..+|++..|+..++... ++.+
T Consensus 189 ~il~Li~~~l~~~gk-~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~---------dp~~ 258 (461)
T KOG4199|consen 189 KILELILQVLNREGK-TRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGI---------DPDS 258 (461)
T ss_pred hHHHHHHHHHcccCc-cHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccC---------CccH
Confidence 778877767654442 245566777787776633 244578999999999999998622 2344
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHH---HHHHHHHhhhhccccCCCCCCCCCCCCc
Q 008257 332 LEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMV---SATALENLSLESKNLTKLPELPPSGFCA 408 (572)
Q Consensus 332 ~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~---Aa~aL~~ls~~~~~~~~~~~~~~~~~~~ 408 (572)
...+..+|..++- +.+..+.+.+.|++..|++++.+......|.. +...|..++.++.
T Consensus 259 L~~l~~tl~~lAV----r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Ds--------------- 319 (461)
T KOG4199|consen 259 LVSLSTTLKALAV----RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDS--------------- 319 (461)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCc---------------
Confidence 6667888888883 67888999999999999999998635555544 4444455554432
Q ss_pred cccccccCCCccccccccccCccCccchhhhhhccchHHHHHhh--cCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHh
Q 008257 409 SIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALL--DHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCE 486 (572)
Q Consensus 409 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL--~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~ 486 (572)
..-.|++.||.+.++.++ .+++|.|.+.++.+++.|+.-.+ +....+++
T Consensus 320 --------------------------vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~p---dhsa~~ie 370 (461)
T KOG4199|consen 320 --------------------------VKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSP---DHSAKAIE 370 (461)
T ss_pred --------------------------hHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCc---chHHHHHh
Confidence 122488999999999998 56899999999999999998765 44667889
Q ss_pred cCChHHHHHHHhhcCC-HHHHHHHHHHHHHHHcc-hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhccc
Q 008257 487 AQGIKPILDVLLEKRT-ENLQRRAVWVVERILRT-DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKI 561 (572)
Q Consensus 487 ~g~i~~L~~lL~~~~~-~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~ 561 (572)
.||-...++-|+.|+- ..+|.+|.|++.|+.-+ .+.+..+- +.|+. .|+..-++.++.+...|..||..|+-.
T Consensus 371 ~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l-~~GiE-~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 371 AGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL-ANGIE-KLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred cchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH-hccHH-HHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 9999999999988886 56899999999999955 44444433 34664 899999999999999999999999753
No 16
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.61 E-value=3.4e-14 Score=155.82 Aligned_cols=363 Identities=16% Similarity=0.147 Sum_probs=267.9
Q ss_pred HHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccC---CHHHHHHHHHHHHHhhcCC-CcHHHHHHcCChHHHHH-
Q 008257 51 ETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSG---NMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVK- 124 (572)
Q Consensus 51 ~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~---~~~~~~~A~~aL~~Ls~~~-~~~~~iv~~G~i~~Lv~- 124 (572)
..+.+++..+..|..+.+....++..|. |.||++|-.. +.+.+..|-.+|.||..+. +.+..=.+.-+++.|=+
T Consensus 209 ~D~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQI 288 (2195)
T KOG2122|consen 209 DDEEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQI 288 (2195)
T ss_pred CCHHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHH
Confidence 3466788888889888888899999999 9999999753 4577889999999999753 33222223334444332
Q ss_pred ---------HHhccCCCC--CCcchHH-HHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhc---------
Q 008257 125 ---------DLFTVGSNH--LPMRLKE-VSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN--------- 183 (572)
Q Consensus 125 ---------lL~s~~~~~--~~~~~~~-~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~--------- 183 (572)
.|...+... .+..-+. .|..+|..++... ++++.+.+-|.+..+-+|+.-
T Consensus 289 raYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDE---------EhR~aM~ELG~LqAIaeLl~vDh~mhgp~t 359 (2195)
T KOG2122|consen 289 RAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDE---------EHRHAMNELGGLQAIAELLQVDHEMHGPET 359 (2195)
T ss_pred HHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccH---------HHHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 233322111 1112222 5666666665432 234567778888887777741
Q ss_pred C---ChhHHHHHHHHHHHccCCCCccHHHHHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcc
Q 008257 184 T---GPTIECKLLQVLVGLTSSPTTVLSVVSAIK-SSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGA 259 (572)
Q Consensus 184 ~---~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~ 259 (572)
. ...++..+..+|-||+-...+ ++..++ ..|.+..+|..|.+..+++..--+.+|+||+=..+....+.+.+.
T Consensus 360 nd~~~~aLRrYa~MALTNLTFGDv~---NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~ 436 (2195)
T KOG2122|consen 360 NDGECNALRRYAGMALTNLTFGDVA---NKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRET 436 (2195)
T ss_pred CcHHHHHHHHHHHHHhhcccccccc---chhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhh
Confidence 1 224577888899999876543 233333 568899999999988878888888999999943333444567777
Q ss_pred cCChhhHHhhhc-cCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhC-CChHHHHHHHhhhccCCCCCCcchhhHHHHHHH
Q 008257 260 VGQLGSLIRVIS-ENVGISKEQAAAVGLLAELPERDLGLTRQMLDE-GAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLS 337 (572)
Q Consensus 260 ~g~l~~Lv~lL~-~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~-g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~ 337 (572)
|-+-.|+..-- ...+ ....+.+.+|+||+.+..+++..|+.- |++..||.+|.-. +. ...-.++|.+-|
T Consensus 437 -GsVtaLa~~al~~~kE--sTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~--~q----s~tLaIIEsaGG 507 (2195)
T KOG2122|consen 437 -GSVTALAACALRNKKE--STLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYE--GQ----SNTLAIIESAGG 507 (2195)
T ss_pred -hhHHHHHHHHHHhccc--chHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhcccc--CC----cchhhhhhcCcc
Confidence 88888888754 4442 456677899999999999998888754 8999999999742 11 124678999999
Q ss_pred HHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCC
Q 008257 338 VLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQ 417 (572)
Q Consensus 338 aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (572)
+|-+..+.++.+...|+.+++++++..|++.|++. +..+..+++.+||||+..++
T Consensus 508 ILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSNaCGTLWNLSAR~p------------------------ 562 (2195)
T KOG2122|consen 508 ILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARSP------------------------ 562 (2195)
T ss_pred HHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeecchhhhhhhhcCCH------------------------
Confidence 99998887778899999999999999999999999 88899999999999975332
Q ss_pred CccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc
Q 008257 418 PVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV 475 (572)
Q Consensus 418 ~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~ 475 (572)
+.+-+|.+.|+|+-|-.|+++.+..+...++.||-||..+.+
T Consensus 563 ----------------~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 563 ----------------EDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred ----------------HHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 345568899999999999999999999999999999997653
No 17
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=1.2e-12 Score=124.82 Aligned_cols=354 Identities=16% Similarity=0.205 Sum_probs=255.7
Q ss_pred HHHHHHHHhhcc-C---cchHHHHHHcCCcHHHHHHHc---cCCHHHHHHHHHHHHHhccCcchhHHHHhh-hHHHHHHh
Q 008257 13 EKAEKTLANLEK-C---ENNVRQMAENGRLQPLLTQIL---EGPQETKLSLAAFLGDLALNSDVKVLVART-VGSCLINI 84 (572)
Q Consensus 13 ~~A~~~L~~L~~-~---~~n~~~i~~~g~i~~Lv~~L~---~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~-g~~~Lv~l 84 (572)
+.....|.+|+. + ...+..-...|..+.++..+. +++..+-.++..+|..+....+ .+... |...++++
T Consensus 77 ~E~s~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qp---dl~da~g~~vvv~l 153 (461)
T KOG4199|consen 77 EETTELLEQLADECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQP---DLFDAEAMAVVLKL 153 (461)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCc---chhccccHHHHHHH
Confidence 344566666662 1 112233336677777776543 4455566677777777665322 33343 45888888
Q ss_pred cc--cCCHHHHHHHHHHHHHhhc-CCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCcccc
Q 008257 85 MK--SGNMQAREAALKALNQISS-CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITV 161 (572)
Q Consensus 85 L~--s~~~~~~~~A~~aL~~Ls~-~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~ 161 (572)
|. +++.++-...+.++..=+. ++.|++.+++.|++|.+.+.|...+ ...+.+.+.|++.-|...+. .+ +
T Consensus 154 L~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~g----k~~~VRel~~a~r~l~~dDD-iR---V 225 (461)
T KOG4199|consen 154 LALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREG----KTRTVRELYDAIRALLTDDD-IR---V 225 (461)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccC----ccHHHHHHHHHHHHhcCCCc-ee---e
Confidence 85 4667788888888887764 6788999999999999998886543 24567778888888865432 11 1
Q ss_pred CCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC-CHHHHHHHHHH
Q 008257 162 GPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP-QNDLRLASIEL 240 (572)
Q Consensus 162 ~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~~ 240 (572)
- .| . .. .-.+.|...|++..|++.+... +|++-.....+
T Consensus 226 ~--------fg----------------------------~-ah---~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~t 265 (461)
T KOG4199|consen 226 V--------FG----------------------------Q-AH---GHARTIAKEGILTALTEALQAGIDPDSLVSLSTT 265 (461)
T ss_pred e--------cc----------------------------h-hh---HHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHH
Confidence 0 00 0 00 1235667788999999999865 57888888889
Q ss_pred HHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC--ChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhc
Q 008257 241 IQNLSPHMGHELADALRGAVGQLGSLIRVISENVG--ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQ 318 (572)
Q Consensus 241 L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~--~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~ 318 (572)
|..|+-. +++.+.+.+. |++..|++++.+.+. +...-..+..+|+.|+. ++.++..+++.|+.+.++.++....
T Consensus 266 l~~lAVr--~E~C~~I~e~-GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~ 341 (461)
T KOG4199|consen 266 LKALAVR--DEICKSIAES-GGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHS 341 (461)
T ss_pred HHHHHHH--HHHHHHHHHc-cCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcC
Confidence 9999855 4677888888 999999999988654 22234567778888887 5567789999999999999886532
Q ss_pred cCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccC-CcHHHHHHHHHHHHHhhhhccccCC
Q 008257 319 LGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN-GLDKVQMVSATALENLSLESKNLTK 397 (572)
Q Consensus 319 ~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~vk~~Aa~aL~~ls~~~~~~~~ 397 (572)
.++.+.+.+..+++-++- ..|++...+++.|+-...++-++.. ....+|++|++.+.|+...+...+.
T Consensus 342 --------~~p~Vi~~~~a~i~~l~L---R~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~ 410 (461)
T KOG4199|consen 342 --------DDPLVIQEVMAIISILCL---RSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRT 410 (461)
T ss_pred --------CChHHHHHHHHHHHHHHh---cCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 366778888888888875 4899999999999999999999975 2567999999999999876654433
Q ss_pred CCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhc
Q 008257 398 LPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDD 473 (572)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~ 473 (572)
+.=+.|++.|+..-...++.+...|-.||-.|--|
T Consensus 411 -----------------------------------------~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 411 -----------------------------------------ILLANGIEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred -----------------------------------------hHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 12345899999999999888888888888877654
No 18
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.60 E-value=4.2e-12 Score=135.85 Aligned_cols=403 Identities=15% Similarity=0.163 Sum_probs=272.9
Q ss_pred CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcch-hHHHHhhhH-HHH
Q 008257 4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDV-KVLVARTVG-SCL 81 (572)
Q Consensus 4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~-k~~i~~~g~-~~L 81 (572)
+++.+.+....++.+|..+-........ ..++.+.|...|.++++.+|..++..|.+++.+++. ...+.+.++ +.+
T Consensus 47 L~~~~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i 124 (503)
T PF10508_consen 47 LNTSNREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLI 124 (503)
T ss_pred HhhcChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHH
Confidence 3455667777788888888764333222 566778899999999999999999999999875544 445566788 999
Q ss_pred HHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCcccc
Q 008257 82 INIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITV 161 (572)
Q Consensus 82 v~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~ 161 (572)
+.+|.+++..+...|+.+|.+|+.++...+.+++.+.++.|..++...+ ..+|.+..+++.++++.+
T Consensus 125 ~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~-----~~vR~Rv~el~v~i~~~S-------- 191 (503)
T PF10508_consen 125 IQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSS-----DIVRCRVYELLVEIASHS-------- 191 (503)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccC-----HHHHHHHHHHHHHHHhcC--------
Confidence 9999999999999999999999998888888889999999999997632 567777788888776543
Q ss_pred CCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHH
Q 008257 162 GPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELI 241 (572)
Q Consensus 162 ~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L 241 (572)
++....+.+.|.++.++..|+++|.-+|.+++.+|
T Consensus 192 ---------------------------------------------~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell 226 (503)
T PF10508_consen 192 ---------------------------------------------PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELL 226 (503)
T ss_pred ---------------------------------------------HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHH
Confidence 13456667889999999999998889999999999
Q ss_pred HHcCCCCChhHHHHHhcccCChhhHHhhhccCCC---ChHHHHHHH-HHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhh
Q 008257 242 QNLSPHMGHELADALRGAVGQLGSLIRVISENVG---ISKEQAAAV-GLLAELPERDLGLTRQMLDEGAFGLIFSRVKSI 317 (572)
Q Consensus 242 ~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~---~~~~~~~A~-~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~ 317 (572)
..|+.. +.. .+.+... |.++.|+.++..... .......+. ...++++..++.. +. +..|.++..|.+.
T Consensus 227 ~~La~~-~~g-~~yL~~~-gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~---v~--~~~p~~~~~l~~~ 298 (503)
T PF10508_consen 227 SELAET-PHG-LQYLEQQ-GIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQE---VL--ELYPAFLERLFSM 298 (503)
T ss_pred HHHHcC-hhH-HHHHHhC-CHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHH---HH--HHHHHHHHHHHHH
Confidence 999974 223 3567776 999999999976543 112222222 3445555432222 11 4556666665532
Q ss_pred ccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHH-HHcC-c----hHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 008257 318 QLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALC-CEHN-L----AALFIELLQSNGLDKVQMVSATALENLSLE 391 (572)
Q Consensus 318 ~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i-~~~g-~----i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~ 391 (572)
-. ..+...+..|+.+++.+++ +.+-.+.+ ...+ . +..+-....++ +.++|..+..++.++...
T Consensus 299 ~~------s~d~~~~~~A~dtlg~igs----t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~-~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 299 LE------SQDPTIREVAFDTLGQIGS----TVEGKQLLLQKQGPAMKHVLKAIGDAIKSG-STELKLRALHALASILTS 367 (503)
T ss_pred hC------CCChhHHHHHHHHHHHHhC----CHHHHHHHHhhcchHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHhc
Confidence 10 1245567889999999984 56655555 3332 3 33334444455 788999999999999643
Q ss_pred ccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchH-HHHHhhcCCCHhHHHHHHHHHHHh
Q 008257 392 SKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVE-KLIALLDHTNEKVVEASLAALSTV 470 (572)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~-~Lv~lL~~~~~~v~~~A~~aL~~l 470 (572)
...... ..++. + .+.-|.....+... .++.+++.+-++++.++.+.|..+
T Consensus 368 ~~~~~~----------~~i~~-~------------------~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l 418 (503)
T PF10508_consen 368 GTDRQD----------NDILS-I------------------TESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQAL 418 (503)
T ss_pred CCCCch----------HHHHH-H------------------HHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 322100 00000 0 01112222333444 788999999999999999999999
Q ss_pred hhcCccchhhHHHHHhcCCh-HHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257 471 IDDGVDIEQGVMVLCEAQGI-KPILDVLLEKRTENLQRRAVWVVERILRT 519 (572)
Q Consensus 471 ~~~~~~~~~~~~~i~~~g~i-~~L~~lL~~~~~~~~~~~a~~~l~~l~~~ 519 (572)
+..+ -++..+...+|+ ..+++-- ...+.+.++.=-.++.++...
T Consensus 419 ~~~~----Wg~~~i~~~~gfie~lldr~-~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 419 AAQP----WGQREICSSPGFIEYLLDRS-TETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred hcCH----HHHHHHHhCccHHhhhcCCC-CCCCHHHHHHHHHHHHHHHhc
Confidence 9753 345556666553 3333322 133455666555666666644
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.58 E-value=7.2e-12 Score=134.11 Aligned_cols=422 Identities=15% Similarity=0.221 Sum_probs=286.2
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS 158 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~ 158 (572)
+.+++.|++.+.+....++.+|..+.....-... ..+..+.|...|.+++ +.+|+.+++.|.+++.++....
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~-----~~Vr~l~l~~l~~~~~~~~~~~- 112 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPS-----PKVRRLALKQLGRIARHSEGAA- 112 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHhcCCHHHH-
Confidence 5588999988888888899999998874432322 6778889999998653 8999999999999987543211
Q ss_pred cccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHH
Q 008257 159 ITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASI 238 (572)
Q Consensus 159 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~ 238 (572)
+.+...++++.++.++.+++.++...|+.+|..++..+.. ...+...+.+..|..++...++.+|..+.
T Consensus 113 -------~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~----~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~ 181 (503)
T PF10508_consen 113 -------QLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG----LEQLFDSNLLSKLKSLMSQSSDIVRCRVY 181 (503)
T ss_pred -------HHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh----HHHHhCcchHHHHHHHHhccCHHHHHHHH
Confidence 3456788999999999999999999999999999987643 34566788899999999887888899999
Q ss_pred HHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhc
Q 008257 239 ELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQ 318 (572)
Q Consensus 239 ~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~ 318 (572)
.++.++++.. ++..+.+..+ |.++.+++.|.+++. -++..++-+|..++. .+...+.+.+.|+++.|++++.+..
T Consensus 182 el~v~i~~~S-~~~~~~~~~s-gll~~ll~eL~~dDi--Lvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~ 256 (503)
T PF10508_consen 182 ELLVEIASHS-PEAAEAVVNS-GLLDLLLKELDSDDI--LVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSE 256 (503)
T ss_pred HHHHHHHhcC-HHHHHHHHhc-cHHHHHHHHhcCccH--HHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccc
Confidence 9999998774 4555666766 999999999999664 789999999999999 5566689999999999999998754
Q ss_pred cCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCC
Q 008257 319 LGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKL 398 (572)
Q Consensus 319 ~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~ 398 (572)
.+. + ...-+.-+.+....+++.. +|..... .-...+..|.+++.+. ++..+..|..+++.++.+..-
T Consensus 257 ~dp-~---~~~~~l~g~~~f~g~la~~---~~~~v~~-~~p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst~~G---- 323 (503)
T PF10508_consen 257 EDP-R---LSSLLLPGRMKFFGNLARV---SPQEVLE-LYPAFLERLFSMLESQ-DPTIREVAFDTLGQIGSTVEG---- 323 (503)
T ss_pred cCC-c---ccchhhhhHHHHHHHHHhc---ChHHHHH-HHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCCHHH----
Confidence 221 0 1111223344455555532 2321111 0012233344555566 788888888899988754321
Q ss_pred CCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccch
Q 008257 399 PELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIE 478 (572)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~ 478 (572)
+..+ +.+.+ ..+ ...+...-....++..+++..++.+|.++...+.+.+
T Consensus 324 ---------~~~L--~~~~~----------------~~~----~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~ 372 (503)
T PF10508_consen 324 ---------KQLL--LQKQG----------------PAM----KHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQ 372 (503)
T ss_pred ---------HHHH--Hhhcc----------------hHH----HHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 1111 00000 000 1134445555567778899999999999965443200
Q ss_pred -----hhHHHHH---hcCChH-HHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHH
Q 008257 479 -----QGVMVLC---EAQGIK-PILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQ 549 (572)
Q Consensus 479 -----~~~~~i~---~~g~i~-~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~ 549 (572)
...+... ..+... .++.+++ .+=+++|..+..+|..++.++-....+...+|+..-|++--...+.+.++
T Consensus 373 ~~~i~~~~~~w~~~~~~~~~~~~l~~~~~-qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke 451 (503)
T PF10508_consen 373 DNDILSITESWYESLSGSPLSNLLMSLLK-QPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKE 451 (503)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHHhc-CCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHH
Confidence 1111222 223333 5667773 55599999999999999998877778887767654444433344444444
Q ss_pred HHHHHHHhhcccCC-CCCCCC
Q 008257 550 IAERALKHIDKIPN-FSGIFP 569 (572)
Q Consensus 550 ~Aa~aL~~L~~~~~-~s~~~~ 569 (572)
.=-.++..|.+.+. .++.|.
T Consensus 452 ~K~~ii~~l~~~~~~~~~~~~ 472 (503)
T PF10508_consen 452 AKYDIIKALAKSSTNASSVFD 472 (503)
T ss_pred HHHHHHHHHHhcccchhhcCC
Confidence 43444555555555 444443
No 20
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.57 E-value=1.2e-12 Score=128.66 Aligned_cols=433 Identities=15% Similarity=0.121 Sum_probs=292.8
Q ss_pred HHHHHHHhhccCcchHHHHH----HcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhccc
Q 008257 14 KAEKTLANLEKCENNVRQMA----ENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKS 87 (572)
Q Consensus 14 ~A~~~L~~L~~~~~n~~~i~----~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s 87 (572)
.+...+...+.++.-+..+. .+|.+++|.+..++.+.++-....++|+|++. ++++|..+.+.|| ..+++.|++
T Consensus 61 ~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~ 140 (604)
T KOG4500|consen 61 FQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKP 140 (604)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhcc
Confidence 34455555566665555554 56778888888888889999999999999887 8899999999988 999999985
Q ss_pred ----CC---HHHHHHHHHHHHHhhcC-CCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC-CCc
Q 008257 88 ----GN---MQAREAALKALNQISSC-EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD-FDS 158 (572)
Q Consensus 88 ----~~---~~~~~~A~~aL~~Ls~~-~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~-~~~ 158 (572)
++ .+.-.-+.+.|.|-..+ ++.+..+++.|++|.|..++.-+-+| ..+.+.......|+.+--.+ ..
T Consensus 141 ~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qN---aa~~e~ll~~f~nlls~~~e~~~- 216 (604)
T KOG4500|consen 141 YCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQN---AALTEKLLAPFFNLLSFVCEMLY- 216 (604)
T ss_pred ccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhccccc---HHHHHHHHhccccHHHHHHHhhh-
Confidence 22 24456677888887764 44578889999999999988643222 44556555555565432110 00
Q ss_pred cccCCCccccchhhhHHHHHHHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcC-CCHHHHHH
Q 008257 159 ITVGPDNQTLVSEDIVHNLLHLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA-PQNDLRLA 236 (572)
Q Consensus 159 ~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~ 236 (572)
........+..+++++.+ ..++..+-....|...+.+. .++-.+.+.|-+..++++++. ++..-+..
T Consensus 217 -------~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend----~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d 285 (604)
T KOG4500|consen 217 -------PFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAEND----LVKLSLAQNGLLEDSIDLVRNMKDFTKKTD 285 (604)
T ss_pred -------hhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCc----ceeeehhhcchHHHHHHHHHhcccccchHH
Confidence 012233456677888864 45566666677777777664 456667889999999999986 44333444
Q ss_pred HHHHHHHcC-------CCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHH
Q 008257 237 SIELIQNLS-------PHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGL 309 (572)
Q Consensus 237 a~~~L~~Ls-------~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~ 309 (572)
+...+...+ .++ +.. +.+...+..+..++..+.+.+. .....+.-+|+|++..|... -.+++.|.+..
T Consensus 286 ~~~l~k~~~el~vllltGD-eSM-q~L~~~p~~l~~~~sw~~S~d~--~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nk 360 (604)
T KOG4500|consen 286 MLNLFKRIAELDVLLLTGD-ESM-QKLHADPQFLDFLESWFRSDDS--NLITMGSLAIGNFARRDDIC-IQLVQKDFLNK 360 (604)
T ss_pred HHHHHHhhhhHhhhhhcCc-hHH-HHHhcCcHHHHHHHHHhcCCch--hHHHHHHHHHHhhhccchHH-HHHHHHHHHHH
Confidence 444443333 221 222 3455441268888999999886 78888888999999966555 67999999999
Q ss_pred HHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 008257 310 IFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLS 389 (572)
Q Consensus 310 Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls 389 (572)
|+.+|.... +. + .+...+..++.||.++.-+ ..++..+..+|+...+...|+.. .+.++..-...+.-+.
T Consensus 361 L~~~l~~~~-~v-d---gnV~~qhA~lsALRnl~IP----v~nka~~~~aGvteaIL~~lk~~-~ppv~fkllgTlrM~~ 430 (604)
T KOG4500|consen 361 LISCLMQEK-DV-D---GNVERQHACLSALRNLMIP----VSNKAHFAPAGVTEAILLQLKLA-SPPVTFKLLGTLRMIR 430 (604)
T ss_pred HHHHHHHhc-CC-C---ccchhHHHHHHHHHhcccc----CCchhhccccchHHHHHHHHHhc-CCcchHHHHHHHHHHH
Confidence 999997532 11 1 2455678899999999854 34566788999999999999987 5666655444443221
Q ss_pred hhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCH-hHHHHHHHHHH
Q 008257 390 LESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNE-KVVEASLAALS 468 (572)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~-~v~~~A~~aL~ 468 (572)
...+. ..|... . .-.-+..||+-=.++|- +|.....+.|.
T Consensus 431 d~qe~---------------------------~a~eL~------k------n~~l~ekLv~Wsks~D~aGv~gESnRll~ 471 (604)
T KOG4500|consen 431 DSQEY---------------------------IACELA------K------NPELFEKLVDWSKSPDFAGVAGESNRLLL 471 (604)
T ss_pred hchHH---------------------------HHHHHh------c------CHHHHHHHHHhhhCCccchhhhhhhHHHH
Confidence 11100 011000 0 11134556666566554 48888888888
Q ss_pred HhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257 469 TVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL 517 (572)
Q Consensus 469 ~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~ 517 (572)
.|..+.. +++....+.+.|||+.++.++ ....-..|..|+-++..+.
T Consensus 472 ~lIkHs~-~kdv~~tvpksg~ik~~Vsm~-t~~hi~mqnEalVal~~~~ 518 (604)
T KOG4500|consen 472 GLIKHSK-YKDVILTVPKSGGIKEKVSMF-TKNHINMQNEALVALLSTE 518 (604)
T ss_pred HHHHhhH-hhhhHhhccccccHHHHHHHH-HHhhHHHhHHHHHHHHHHH
Confidence 8887643 445567788999999999999 5778888888888776553
No 21
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.55 E-value=5.7e-12 Score=130.26 Aligned_cols=492 Identities=14% Similarity=0.111 Sum_probs=297.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcc-CcchHHHHHHcCCcHHHHHHHcc--CCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-
Q 008257 4 SKSENLLTVEKAEKTLANLEK-CENNVRQMAENGRLQPLLTQILE--GPQETKLSLAAFLGDLAL-NSDVKVLVARTVG- 78 (572)
Q Consensus 4 ~~s~~~~~~~~A~~~L~~L~~-~~~n~~~i~~~g~i~~Lv~~L~~--~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~- 78 (572)
+...||+..-.|....+|+.. ++.++.-+.+.|+++.|..+++. +..+.+...+..+..++. +......+.+.+.
T Consensus 18 L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~l 97 (678)
T KOG1293|consen 18 LLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIEL 97 (678)
T ss_pred hhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhH
Confidence 456788887888999999876 67777789999999999988764 557777777777887777 4445566667777
Q ss_pred HHHHHhcccCC-HHHHHHHHHHHHHhhcCCCcH---HHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCC
Q 008257 79 SCLINIMKSGN-MQAREAALKALNQISSCEPSA---KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGH 154 (572)
Q Consensus 79 ~~Lv~lL~s~~-~~~~~~A~~aL~~Ls~~~~~~---~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~ 154 (572)
+.|.++|.+.+ ..+.+..+++++.+....+.. ....+...++.+..+++-.. ....+.-+...++++. ..
T Consensus 98 l~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~l-----k~~~~l~~~~~a~~s~-~~ 171 (678)
T KOG1293|consen 98 LKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIEL-----KYISRLDVSRAAHLSS-TK 171 (678)
T ss_pred HHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhh-----hhhhhhhhhhhccccc-cc
Confidence 99999999888 778999999999999765443 33345666776666665111 1222222222223322 11
Q ss_pred CCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHH---HccCC-CCccHHHHHHHHhcCChH--HHHHHhcC
Q 008257 155 DFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLV---GLTSS-PTTVLSVVSAIKSSGATI--SLVQFVEA 228 (572)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~---~l~~~-~~~~~~~~~~i~~~g~i~--~Lv~lL~~ 228 (572)
.+...+...|+...+.-++...+...+..|+..+. .+..+ +.............|..+ ..-++++.
T Consensus 172 --------~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~ 243 (678)
T KOG1293|consen 172 --------DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKD 243 (678)
T ss_pred --------hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhC
Confidence 12235666777777777777667788888888888 54443 333233334444555555 56678888
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhH----HHHHhcccC--Ch--hhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHH
Q 008257 229 PQNDLRLASIELIQNLSPHMGHEL----ADALRGAVG--QL--GSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQ 300 (572)
Q Consensus 229 ~~~~v~~~a~~~L~~Ls~~~~~~~----~~~i~~~~g--~l--~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~ 300 (572)
++...+-.++..+.++.....++. ...+.+. | -+ -..+.++..|.- ..-..+..+.+.++.--..++..
T Consensus 244 ~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dm-gd~~i~q~~~i~l~~~P~~--s~l~~~~~l~c~~a~~~sklq~~ 320 (678)
T KOG1293|consen 244 PDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDM-GDSLIVQYNCIVLMNDPGL--STLDHTNVLFCILARFASKLQLP 320 (678)
T ss_pred CCccHHHHHHHHHHHHHhccccccccccceeeccC-chHHHHHHhhheeecCCce--eehhhhhhhHHHHHHHHHhhhhH
Confidence 887777666666555542211110 0011111 1 00 011122222221 11111222222222112234456
Q ss_pred HHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHH
Q 008257 301 MLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMV 380 (572)
Q Consensus 301 l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~ 380 (572)
..++..++.++.++.....-.. +......+.-+-...+..++.. ..-..++.+.+.-....+..+.... +......
T Consensus 321 ~~e~~~~~~~~ellf~~~sl~a-~~~~~~~i~l~e~~i~~~~~~~--~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aa 396 (678)
T KOG1293|consen 321 QHEEATLKTTTELLFICASLAA-SDEKYRLILLNETLILNHLEYG--LEISLKKEILETTTESHLMCLPPIK-DHDFVAA 396 (678)
T ss_pred HhhhhhhhhHHHHHHHHHHHhh-cchhhhHHHhhhhhhhhhhhhh--cchhHHHHHHHHHHHHHHccccccc-cHHHHHH
Confidence 6788888888888875321000 0000000000000111111111 1223455555544444444444444 5666655
Q ss_pred HHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHH
Q 008257 381 SATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVV 460 (572)
Q Consensus 381 Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~ 460 (572)
|+..+.+++++...++. . +-+..+..|||++|..++..|.
T Consensus 397 a~l~~~s~srsV~aL~t--------------------------------------g--~~~~dv~~plvqll~dp~~~i~ 436 (678)
T KOG1293|consen 397 ALLCLKSFSRSVSALRT--------------------------------------G--LKRNDVAQPLVQLLMDPEIMIM 436 (678)
T ss_pred HHHHHHHHHHHHHHHHc--------------------------------------C--CccchhHHHHHHHhhCcchhHH
Confidence 55666677665543322 1 1245689999999999999999
Q ss_pred HHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCch-HHHHHH
Q 008257 461 EASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVS-TALVDA 539 (572)
Q Consensus 461 ~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~Lv~l 539 (572)
..+++||+|++.+-. +....+.+.|||+.+..++ .+.+...+..+.|+|..+.-+.+...++.....++ .-|+.+
T Consensus 437 ~~~lgai~NlVmefs---~~kskfl~~ngId~l~s~~-~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l 512 (678)
T KOG1293|consen 437 GITLGAICNLVMEFS---NLKSKFLRNNGIDILESML-TDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDL 512 (678)
T ss_pred HHHHHHHHHHHhhcc---cHHHHHHHcCcHHHHHHHh-cCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHH
Confidence 999999999997643 3456788999999999999 59999999999999998874422222222222344 578888
Q ss_pred hhcCCchhHHHHHHHHHhhcc
Q 008257 540 FQHADYRTRQIAERALKHIDK 560 (572)
Q Consensus 540 l~~~~~~~~~~Aa~aL~~L~~ 560 (572)
..+++..||+-+-..|+||.=
T Consensus 513 ~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 513 INDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HhCCCHHHHHHHHHHHHHhhc
Confidence 999999999999998888864
No 22
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.53 E-value=4e-13 Score=129.35 Aligned_cols=196 Identities=19% Similarity=0.280 Sum_probs=164.7
Q ss_pred HHcCCcHHHHHHHccC-CHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcH
Q 008257 33 AENGRLQPLLTQILEG-PQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSA 110 (572)
Q Consensus 33 ~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~ 110 (572)
.+++-+++|+.+|+.. ++..+..+..++++.+..+.++..|.+.|+ +.+.++|+++++.+++.|+++|.|++.+.+|.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 5677789999999954 688999999999999999999999999988 99999999999999999999999999999998
Q ss_pred HHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHH
Q 008257 111 KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIEC 190 (572)
Q Consensus 111 ~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~ 190 (572)
..|-. .|+.+++...+.. .+..+|..+..+|.||+..+.. . .+. .+.++.++++|.+++..+|.
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~---lns~~Q~agLrlL~nLtv~~~~-~---------~~l-~~~i~~ll~LL~~G~~~~k~ 152 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSP---LNSEVQLAGLRLLTNLTVTNDY-H---------HML-ANYIPDLLSLLSSGSEKTKV 152 (254)
T ss_pred HHHHH--HHHHHHHHHhcCC---CCCHHHHHHHHHHHccCCCcch-h---------hhH-HhhHHHHHHHHHcCChHHHH
Confidence 77643 5888888665542 2368899999999999754322 1 122 35799999999999999999
Q ss_pred HHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC-CHHHHHHHHHHHHHcCCCC
Q 008257 191 KLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP-QNDLRLASIELIQNLSPHM 248 (572)
Q Consensus 191 ~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~~L~~Ls~~~ 248 (572)
+++++|.+|+.++. ..+.+..+++++.++.|++.+ +.++...++..+.|+..+-
T Consensus 153 ~vLk~L~nLS~np~----~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 153 QVLKVLVNLSENPD----MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred HHHHHHHHhccCHH----HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 99999999999974 455667789999999999886 4688889999999997653
No 23
>PRK09687 putative lyase; Provisional
Probab=99.51 E-value=3.7e-12 Score=125.42 Aligned_cols=253 Identities=11% Similarity=0.083 Sum_probs=195.6
Q ss_pred CcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 008257 37 RLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIH 115 (572)
Q Consensus 37 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~ 115 (572)
-+++|+.+|.+.+..+|..++.+|..+.. ..+ +.+..++.++++.+|..|+++|..|-..+.. .
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 48999999999999999999999985542 334 8899999999999999999999998653321 2
Q ss_pred cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHH
Q 008257 116 AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQV 195 (572)
Q Consensus 116 ~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~a 195 (572)
.-++|.|..++.. +.++.++..|+.+|+++......+ ...++..+...+.++++.++..++++
T Consensus 89 ~~a~~~L~~l~~~----D~d~~VR~~A~~aLG~~~~~~~~~-------------~~~a~~~l~~~~~D~~~~VR~~a~~a 151 (280)
T PRK09687 89 DNVFNILNNLALE----DKSACVRASAINATGHRCKKNPLY-------------SPKIVEQSQITAFDKSTNVRFAVAFA 151 (280)
T ss_pred HHHHHHHHHHHhc----CCCHHHHHHHHHHHhccccccccc-------------chHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 2367888877543 234889999999999996432211 23457777788888899999999999
Q ss_pred HHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC
Q 008257 196 LVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG 275 (572)
Q Consensus 196 L~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~ 275 (572)
|..+.. ..+++.|+.+|+++++.+|..|+.+|..+..+. . .+++.|+.+|..++.
T Consensus 152 Lg~~~~--------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~-~----------~~~~~L~~~L~D~~~ 206 (280)
T PRK09687 152 LSVIND--------------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN-P----------DIREAFVAMLQDKNE 206 (280)
T ss_pred HhccCC--------------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC-H----------HHHHHHHHHhcCCCh
Confidence 965531 237899999999999999999999999884331 1 245788999987775
Q ss_pred ChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHH
Q 008257 276 ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIAL 355 (572)
Q Consensus 276 ~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~ 355 (572)
.++..|+..|+.+-. ..++|+|+..|.+.. +...++.+|..+. ++
T Consensus 207 --~VR~~A~~aLg~~~~-----------~~av~~Li~~L~~~~------------~~~~a~~ALg~ig-----~~----- 251 (280)
T PRK09687 207 --EIRIEAIIGLALRKD-----------KRVLSVLIKELKKGT------------VGDLIIEAAGELG-----DK----- 251 (280)
T ss_pred --HHHHHHHHHHHccCC-----------hhHHHHHHHHHcCCc------------hHHHHHHHHHhcC-----CH-----
Confidence 899999999988632 156899999998621 2446888888886 44
Q ss_pred HHHcCchHHHHHHhc-cCCcHHHHHHHHHHHH
Q 008257 356 CCEHNLAALFIELLQ-SNGLDKVQMVSATALE 386 (572)
Q Consensus 356 i~~~g~i~~Lv~lL~-~~~~~~vk~~Aa~aL~ 386 (572)
-++|.|..+++ .+ +..++..|.++|.
T Consensus 252 ----~a~p~L~~l~~~~~-d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 ----TLLPVLDTLLYKFD-DNEIITKAIDKLK 278 (280)
T ss_pred ----hHHHHHHHHHhhCC-ChhHHHHHHHHHh
Confidence 25799999998 56 9999999988874
No 24
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.50 E-value=1.7e-12 Score=125.05 Aligned_cols=190 Identities=13% Similarity=0.167 Sum_probs=153.9
Q ss_pred hHHHHHHhccc-CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257 77 VGSCLINIMKS-GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD 155 (572)
Q Consensus 77 g~~~Lv~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~ 155 (572)
..+.|+.+|++ .++..|+.|..++.+.+.++.+++.|.+.|+++.+..+|..++ +.+|+.|.++|.|++.+.++
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~-----~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPN-----PSVREKALNALNNLSVNDEN 87 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCC-----hHHHHHHHHHHHhcCCChhh
Confidence 34999999995 6899999999999999999999999999999999999998753 89999999999999876543
Q ss_pred CCccccCCCccccchhhhHHHHHHHHhcC--ChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHH
Q 008257 156 FDSITVGPDNQTLVSEDIVHNLLHLISNT--GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDL 233 (572)
Q Consensus 156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 233 (572)
.. .-+..|+.+.+.+.+. +.++|..++++|.+++-.++. +..+. +.++.|+++|..++..+
T Consensus 88 ~~-----------~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~----~~~l~--~~i~~ll~LL~~G~~~~ 150 (254)
T PF04826_consen 88 QE-----------QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY----HHMLA--NYIPDLLSLLSSGSEKT 150 (254)
T ss_pred HH-----------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch----hhhHH--hhHHHHHHHHHcCChHH
Confidence 22 2244678887766653 678999999999999876543 44443 47999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCC
Q 008257 234 RLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPE 292 (572)
Q Consensus 234 ~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~ 292 (572)
|.+++++|.+||... ...+.+... .++..++.++..+.+ .+....++..+.|+..
T Consensus 151 k~~vLk~L~nLS~np--~~~~~Ll~~-q~~~~~~~Lf~~~~~-~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 151 KVQVLKVLVNLSENP--DMTRELLSA-QVLSSFLSLFNSSES-KENLLRVLTFFENINE 205 (254)
T ss_pred HHHHHHHHHHhccCH--HHHHHHHhc-cchhHHHHHHccCCc-cHHHHHHHHHHHHHHH
Confidence 999999999999762 333455555 789999999988764 3777778888888744
No 25
>PRK09687 putative lyase; Provisional
Probab=99.49 E-value=5.7e-12 Score=124.12 Aligned_cols=257 Identities=14% Similarity=0.084 Sum_probs=195.8
Q ss_pred cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHH
Q 008257 116 AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQV 195 (572)
Q Consensus 116 ~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~a 195 (572)
.=-++.|+.+|.+. +..++..|+++|..+-. ..+++.+..++.++++.++..++++
T Consensus 22 ~~~~~~L~~~L~d~-----d~~vR~~A~~aL~~~~~-------------------~~~~~~l~~ll~~~d~~vR~~A~~a 77 (280)
T PRK09687 22 KLNDDELFRLLDDH-----NSLKRISSIRVLQLRGG-------------------QDVFRLAIELCSSKNPIERDIGADI 77 (280)
T ss_pred hccHHHHHHHHhCC-----CHHHHHHHHHHHHhcCc-------------------chHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34578899999754 37899999999987732 3468889999999999999999999
Q ss_pred HHHccCCCCccHHHHHHHHhcCChHHHHHH-hcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCC
Q 008257 196 LVGLTSSPTTVLSVVSAIKSSGATISLVQF-VEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENV 274 (572)
Q Consensus 196 L~~l~~~~~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~ 274 (572)
|..+...... ....++.|..+ ++.+++.||..|+.+|.++........ . .++..|...+..++
T Consensus 78 Lg~lg~~~~~---------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~----~---~a~~~l~~~~~D~~ 141 (280)
T PRK09687 78 LSQLGMAKRC---------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYS----P---KIVEQSQITAFDKS 141 (280)
T ss_pred HHhcCCCccc---------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccc----h---HHHHHHHHHhhCCC
Confidence 9998654321 12367888877 677889999999999999864422110 0 24556667777776
Q ss_pred CChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHH
Q 008257 275 GISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIA 354 (572)
Q Consensus 275 ~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~ 354 (572)
. .++..|+.+|+.+.. ..+++.|+.+|.+ .+..+...|+.+|.++.. .++
T Consensus 142 ~--~VR~~a~~aLg~~~~-----------~~ai~~L~~~L~d----------~~~~VR~~A~~aLg~~~~---~~~---- 191 (280)
T PRK09687 142 T--NVRFAVAFALSVIND-----------EAAIPLLINLLKD----------PNGDVRNWAAFALNSNKY---DNP---- 191 (280)
T ss_pred H--HHHHHHHHHHhccCC-----------HHHHHHHHHHhcC----------CCHHHHHHHHHHHhcCCC---CCH----
Confidence 4 899999999987642 1357899999986 245688889999988732 234
Q ss_pred HHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCcc
Q 008257 355 LCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLK 434 (572)
Q Consensus 355 ~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 434 (572)
.+++.|+.+|.++ ++.|+..|+++|+.+-
T Consensus 192 -----~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~--------------------------------------------- 220 (280)
T PRK09687 192 -----DIREAFVAMLQDK-NEEIRIEAIIGLALRK--------------------------------------------- 220 (280)
T ss_pred -----HHHHHHHHHhcCC-ChHHHHHHHHHHHccC---------------------------------------------
Confidence 3468899999998 9999999999997642
Q ss_pred chhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHH
Q 008257 435 ETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVE 514 (572)
Q Consensus 435 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~ 514 (572)
+..+||+|++.|.+++ +...|+.||+.+... .++|.|.+++..++|+.++.+|.++|.
T Consensus 221 ------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~--------------~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 221 ------DKRVLSVLIKELKKGT--VGDLIIEAAGELGDK--------------TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred ------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH--------------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 2249999999999866 667899999987631 367899999965889999999999886
Q ss_pred H
Q 008257 515 R 515 (572)
Q Consensus 515 ~ 515 (572)
+
T Consensus 279 ~ 279 (280)
T PRK09687 279 R 279 (280)
T ss_pred c
Confidence 4
No 26
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.49 E-value=3.7e-11 Score=130.98 Aligned_cols=429 Identities=14% Similarity=0.167 Sum_probs=303.6
Q ss_pred CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHH
Q 008257 4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLIN 83 (572)
Q Consensus 4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~ 83 (572)
..|+|....+-+--.+..+...+.....+ .+..+.+-|.++++..|..|..+|.++... .+.+.-.+.+.+
T Consensus 51 ~~s~~~~~Krl~yl~l~~~~~~~~~~~~l----~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~-----~~~~~l~~~v~~ 121 (526)
T PF01602_consen 51 ISSKDLELKRLGYLYLSLYLHEDPELLIL----IINSLQKDLNSPNPYIRGLALRTLSNIRTP-----EMAEPLIPDVIK 121 (526)
T ss_dssp CSSSSHHHHHHHHHHHHHHTTTSHHHHHH----HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH-----HHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHhhcchhHHHH----HHHHHHHhhcCCCHHHHHHHHhhhhhhccc-----chhhHHHHHHHH
Confidence 45889998888888888888766554444 567788889999999999999999987731 233333499999
Q ss_pred hcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCC
Q 008257 84 IMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGP 163 (572)
Q Consensus 84 lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~ 163 (572)
+|.++++.+|..|+.++.++....+. .+-.. .++.+.++|.+. ++.++..|..++..+ ...+...
T Consensus 122 ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l~~lL~d~-----~~~V~~~a~~~l~~i-~~~~~~~------ 186 (526)
T PF01602_consen 122 LLSDPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKLKQLLSDK-----DPSVVSAALSLLSEI-KCNDDSY------ 186 (526)
T ss_dssp HHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHHHHHTTHS-----SHHHHHHHHHHHHHH-HCTHHHH------
T ss_pred HhcCCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHHhhhccCC-----cchhHHHHHHHHHHH-ccCcchh------
Confidence 99999999999999999999865332 12223 699999999764 388999999999998 2211000
Q ss_pred CccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHH
Q 008257 164 DNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQN 243 (572)
Q Consensus 164 ~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~ 243 (572)
.-.....+..|.+++...+|-.|..+++.|..++..... ... ....++.+..++++.++.++-.+++++..
T Consensus 187 ---~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~---~~~---~~~~i~~l~~~l~s~~~~V~~e~~~~i~~ 257 (526)
T PF01602_consen 187 ---KSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE---DAD---KNRIIEPLLNLLQSSSPSVVYEAIRLIIK 257 (526)
T ss_dssp ---TTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH---HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh---hhh---HHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 001234455556666788999999999999999876532 110 04578899999998889999999999998
Q ss_pred cCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCC
Q 008257 244 LSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETR 323 (572)
Q Consensus 244 Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~ 323 (572)
+.... . +.. .+++.|+++|.+++. .++..++..|..++...+. .+. .....+..+...
T Consensus 258 l~~~~--~----~~~--~~~~~L~~lL~s~~~--nvr~~~L~~L~~l~~~~~~----~v~--~~~~~~~~l~~~------ 315 (526)
T PF01602_consen 258 LSPSP--E----LLQ--KAINPLIKLLSSSDP--NVRYIALDSLSQLAQSNPP----AVF--NQSLILFFLLYD------ 315 (526)
T ss_dssp HSSSH--H----HHH--HHHHHHHHHHTSSSH--HHHHHHHHHHHHHCCHCHH----HHG--THHHHHHHHHCS------
T ss_pred hhcch--H----HHH--hhHHHHHHHhhcccc--hhehhHHHHHHHhhcccch----hhh--hhhhhhheecCC------
Confidence 87552 2 222 478899999997774 7999999999999875422 222 233334455421
Q ss_pred CCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhc-cCCcHHHHHHHHHHHHHhhhhccccCCCCCCC
Q 008257 324 GSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQ-SNGLDKVQMVSATALENLSLESKNLTKLPELP 402 (572)
Q Consensus 324 ~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~ 402 (572)
.+..++..++..|..++ ++.+.+. +++.|.+.++ .+ ++.+++.++.++..++...+..
T Consensus 316 ---~d~~Ir~~~l~lL~~l~-----~~~n~~~-----Il~eL~~~l~~~~-d~~~~~~~i~~I~~la~~~~~~------- 374 (526)
T PF01602_consen 316 ---DDPSIRKKALDLLYKLA-----NESNVKE-----ILDELLKYLSELS-DPDFRRELIKAIGDLAEKFPPD------- 374 (526)
T ss_dssp ---SSHHHHHHHHHHHHHH-------HHHHHH-----HHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHGSS-------
T ss_pred ---CChhHHHHHHHHHhhcc-----cccchhh-----HHHHHHHHHHhcc-chhhhhhHHHHHHHHHhccCch-------
Confidence 25667888999999998 5655554 4677788884 44 7779999999999987643210
Q ss_pred CCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHH
Q 008257 403 PSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVM 482 (572)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~ 482 (572)
..-.+..+++++..+++.+...+...+..+....+.. ..
T Consensus 375 --------------------------------------~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~---~~ 413 (526)
T PF01602_consen 375 --------------------------------------AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL---RE 413 (526)
T ss_dssp --------------------------------------HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT---HH
T ss_pred --------------------------------------HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh---hH
Confidence 1126788999999988999999999999998654311 11
Q ss_pred HHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhh---hhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhc
Q 008257 483 VLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDI---AYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHID 559 (572)
Q Consensus 483 ~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~ 559 (572)
. .+..+++.+.+..++.++..++|++..+....+. ... +...+++.+...++.+|...-.++..+.
T Consensus 414 ~-----~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~------~~~~l~~~~~~~~~~vk~~ilt~~~Kl~ 482 (526)
T PF01602_consen 414 K-----ILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPD------ILRSLIENFIEESPEVKLQILTALAKLF 482 (526)
T ss_dssp H-----HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHH------HHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHH------HHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence 2 3677888886567788999999999998855222 111 1135666666677788888888887776
Q ss_pred c
Q 008257 560 K 560 (572)
Q Consensus 560 ~ 560 (572)
.
T Consensus 483 ~ 483 (526)
T PF01602_consen 483 K 483 (526)
T ss_dssp H
T ss_pred h
Confidence 5
No 27
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.45 E-value=1.3e-10 Score=114.58 Aligned_cols=394 Identities=15% Similarity=0.108 Sum_probs=267.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcc-CcchHHHHHHcCCcHHHHHHHcc----CCHH-HHH--HHHHHHHHhcc-CcchhHHHH
Q 008257 4 SKSENLLTVEKAEKTLANLEK-CENNVRQMAENGRLQPLLTQILE----GPQE-TKL--SLAAFLGDLAL-NSDVKVLVA 74 (572)
Q Consensus 4 ~~s~~~~~~~~A~~~L~~L~~-~~~n~~~i~~~g~i~~Lv~~L~~----~~~~-~~~--~aa~~L~~l~~-~~~~k~~i~ 74 (572)
.+|+|.++.+...++|.|.++ +++++..+.+.|+-+.++..|+. .++. .+. -+...|.|... +++.+..+.
T Consensus 96 psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~ 175 (604)
T KOG4500|consen 96 PSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVA 175 (604)
T ss_pred CCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHH
Confidence 478899999999999999998 89999999999997777777753 2211 122 23456777777 667888999
Q ss_pred hhhH-HHHHHhccc--CCHHHHHHHHHHHHHhhcC-CCc-HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 008257 75 RTVG-SCLINIMKS--GNMQAREAALKALNQISSC-EPS-AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANV 149 (572)
Q Consensus 75 ~~g~-~~Lv~lL~s--~~~~~~~~A~~aL~~Ls~~-~~~-~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nl 149 (572)
+.|+ +.|+..+.- .+.+..+.....-.||.+. .++ ...-.++..+.-|+++|.+. ..+++.+...++|+..
T Consensus 176 ~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~----v~~d~~eM~feila~~ 251 (604)
T KOG4500|consen 176 DAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSM----VREDIDEMIFEILAKA 251 (604)
T ss_pred hcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHh----hccchhhHHHHHHHHH
Confidence 9999 999988764 4455566666666777653 232 44455788888999999875 3478899999999999
Q ss_pred HhcCCCCCccccCCCccccchhhhHHHHHHHHhc-CChhHHHH-------HHHHHHHccCCCCccHHHHHHHHhcC-ChH
Q 008257 150 VNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN-TGPTIECK-------LLQVLVGLTSSPTTVLSVVSAIKSSG-ATI 220 (572)
Q Consensus 150 a~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~~~q~~-------a~~aL~~l~~~~~~~~~~~~~i~~~g-~i~ 220 (572)
+.++. . .-.+...|.+..++++++. .+..-+.. ++....-+.... +..++. .+.+ .+.
T Consensus 252 aend~--V-------kl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD---eSMq~L-~~~p~~l~ 318 (604)
T KOG4500|consen 252 AENDL--V-------KLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD---ESMQKL-HADPQFLD 318 (604)
T ss_pred hcCcc--e-------eeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc---hHHHHH-hcCcHHHH
Confidence 87643 1 1246778888888888875 21111111 111111122221 123333 2333 688
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC---ChHHHHHHHHHHhcCCCCcHHH
Q 008257 221 SLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG---ISKEQAAAVGLLAELPERDLGL 297 (572)
Q Consensus 221 ~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~---~~~~~~~A~~~L~~L~~~~~~~ 297 (572)
.++.++++.|.+.+-.+.-++.|+++.+...+ .+.+. |.+..|+++|...++ ..+.+-++..+|+|+.. ...+
T Consensus 319 ~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci--~~v~~-~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~n 394 (604)
T KOG4500|consen 319 FLESWFRSDDSNLITMGSLAIGNFARRDDICI--QLVQK-DFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PVSN 394 (604)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhhhccchHHH--HHHHH-HHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cCCc
Confidence 89999999999999999999999998865444 56666 899999999976332 23778899999999987 4456
Q ss_pred HHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCC---c
Q 008257 298 TRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNG---L 374 (572)
Q Consensus 298 ~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~---~ 374 (572)
+..+..+|..+.++..++.. .+++.-..++.+..+..+ -+. ...+.+-=|.+++-|..+. +
T Consensus 395 ka~~~~aGvteaIL~~lk~~----------~ppv~fkllgTlrM~~d~---qe~---~a~eL~kn~~l~ekLv~Wsks~D 458 (604)
T KOG4500|consen 395 KAHFAPAGVTEAILLQLKLA----------SPPVTFKLLGTLRMIRDS---QEY---IACELAKNPELFEKLVDWSKSPD 458 (604)
T ss_pred hhhccccchHHHHHHHHHhc----------CCcchHHHHHHHHHHHhc---hHH---HHHHHhcCHHHHHHHHHhhhCCc
Confidence 67899999999999999862 455677788887766521 111 2223333344444444330 2
Q ss_pred HH-HHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhc
Q 008257 375 DK-VQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLD 453 (572)
Q Consensus 375 ~~-vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~ 453 (572)
.. +--+.-+.+..+.+++.... -...+.+.|+|+.+|.++.
T Consensus 459 ~aGv~gESnRll~~lIkHs~~kd--------------------------------------v~~tvpksg~ik~~Vsm~t 500 (604)
T KOG4500|consen 459 FAGVAGESNRLLLGLIKHSKYKD--------------------------------------VILTVPKSGGIKEKVSMFT 500 (604)
T ss_pred cchhhhhhhHHHHHHHHhhHhhh--------------------------------------hHhhccccccHHHHHHHHH
Confidence 22 44444455555555432110 0112457889999999999
Q ss_pred CCCHhHHHHHHHHHHHhhh
Q 008257 454 HTNEKVVEASLAALSTVID 472 (572)
Q Consensus 454 ~~~~~v~~~A~~aL~~l~~ 472 (572)
..+-..+..|+-||+.+..
T Consensus 501 ~~hi~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 501 KNHINMQNEALVALLSTES 519 (604)
T ss_pred HhhHHHhHHHHHHHHHHHH
Confidence 9999999999999998764
No 28
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.44 E-value=4e-11 Score=137.36 Aligned_cols=276 Identities=15% Similarity=0.132 Sum_probs=213.4
Q ss_pred HcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHH
Q 008257 34 ENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKV 112 (572)
Q Consensus 34 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~ 112 (572)
..+.++.|+..|.+.++.+|+.|+..|..+.. ... +.|+.+|+.+++.++..|+.+|..+.....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---- 684 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----
Confidence 44567899999999999999999999986542 234 999999999999999999999998853221
Q ss_pred HHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHH
Q 008257 113 LIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKL 192 (572)
Q Consensus 113 iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a 192 (572)
..+.|...|.+. ++.+|..|+.+|..+.. +....|+..|.++++.++..|
T Consensus 685 -----~~~~L~~~L~~~-----d~~VR~~A~~aL~~~~~--------------------~~~~~l~~~L~D~d~~VR~~A 734 (897)
T PRK13800 685 -----PAPALRDHLGSP-----DPVVRAAALDVLRALRA--------------------GDAALFAAALGDPDHRVRIEA 734 (897)
T ss_pred -----chHHHHHHhcCC-----CHHHHHHHHHHHHhhcc--------------------CCHHHHHHHhcCCCHHHHHHH
Confidence 236788888753 37899999998887732 113567889999999999999
Q ss_pred HHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhcc
Q 008257 193 LQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISE 272 (572)
Q Consensus 193 ~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~ 272 (572)
+++|..+. ..+.|..++.++++.+|..++.+|..+..... ..++.|..++..
T Consensus 735 v~aL~~~~-----------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~-----------~~~~~L~~ll~D 786 (897)
T PRK13800 735 VRALVSVD-----------------DVESVAGAATDENREVRIAVAKGLATLGAGGA-----------PAGDAVRALTGD 786 (897)
T ss_pred HHHHhccc-----------------CcHHHHHHhcCCCHHHHHHHHHHHHHhccccc-----------hhHHHHHHHhcC
Confidence 99887641 23456788999999999999999988864421 246788888888
Q ss_pred CCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHH
Q 008257 273 NVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDA 352 (572)
Q Consensus 273 ~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~ 352 (572)
++. .++..|+..|..+... .. .++.++..|.+ .+..++..|+.+|..+. ++
T Consensus 787 ~d~--~VR~aA~~aLg~~g~~-~~---------~~~~l~~aL~d----------~d~~VR~~Aa~aL~~l~-----~~-- 837 (897)
T PRK13800 787 PDP--LVRAAALAALAELGCP-PD---------DVAAATAALRA----------SAWQVRQGAARALAGAA-----AD-- 837 (897)
T ss_pred CCH--HHHHHHHHHHHhcCCc-ch---------hHHHHHHHhcC----------CChHHHHHHHHHHHhcc-----cc--
Confidence 875 8999999999987542 11 12456677765 24567888999998775 22
Q ss_pred HHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccC
Q 008257 353 IALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCS 432 (572)
Q Consensus 353 ~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 432 (572)
..++.|+.+|+++ +..||..|+.+|..+..
T Consensus 838 -------~a~~~L~~~L~D~-~~~VR~~A~~aL~~~~~------------------------------------------ 867 (897)
T PRK13800 838 -------VAVPALVEALTDP-HLDVRKAAVLALTRWPG------------------------------------------ 867 (897)
T ss_pred -------chHHHHHHHhcCC-CHHHHHHHHHHHhccCC------------------------------------------
Confidence 2359999999999 99999999999976511
Q ss_pred ccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHH
Q 008257 433 LKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALS 468 (572)
Q Consensus 433 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 468 (572)
+....+.|...|++.+..|+..|..||.
T Consensus 868 --------~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 868 --------DPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred --------CHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 1126788999999999999999999986
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.43 E-value=4.1e-11 Score=137.23 Aligned_cols=278 Identities=15% Similarity=0.151 Sum_probs=209.5
Q ss_pred HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHH
Q 008257 115 HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQ 194 (572)
Q Consensus 115 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~ 194 (572)
+.+.++.|++.|.+. ++.+|..|+.+|+.+.. +.+++.|+..|++++++++..|+.
T Consensus 619 ~~~~~~~L~~~L~D~-----d~~VR~~Av~~L~~~~~-------------------~~~~~~L~~aL~D~d~~VR~~Aa~ 674 (897)
T PRK13800 619 DAPSVAELAPYLADP-----DPGVRRTAVAVLTETTP-------------------PGFGPALVAALGDGAAAVRRAAAE 674 (897)
T ss_pred cchhHHHHHHHhcCC-----CHHHHHHHHHHHhhhcc-------------------hhHHHHHHHHHcCCCHHHHHHHHH
Confidence 566788999999753 48899999999887632 346899999999999999999998
Q ss_pred HHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCC
Q 008257 195 VLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENV 274 (572)
Q Consensus 195 aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~ 274 (572)
+|..+.... ...+.|...|.++++.+|..|+.+|..+... ....|++.|..++
T Consensus 675 aL~~l~~~~-------------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~--------------~~~~l~~~L~D~d 727 (897)
T PRK13800 675 GLRELVEVL-------------PPAPALRDHLGSPDPVVRAAALDVLRALRAG--------------DAALFAAALGDPD 727 (897)
T ss_pred HHHHHHhcc-------------CchHHHHHHhcCCCHHHHHHHHHHHHhhccC--------------CHHHHHHHhcCCC
Confidence 887664321 1235677888888999999999888876422 2245667787777
Q ss_pred CChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHH
Q 008257 275 GISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIA 354 (572)
Q Consensus 275 ~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~ 354 (572)
. .++..|+.+|..+.. .+.|..++.+ .+..++..++.+|..+.. .
T Consensus 728 ~--~VR~~Av~aL~~~~~--------------~~~l~~~l~D----------~~~~VR~~aa~aL~~~~~-----~---- 772 (897)
T PRK13800 728 H--RVRIEAVRALVSVDD--------------VESVAGAATD----------ENREVRIAVAKGLATLGA-----G---- 772 (897)
T ss_pred H--HHHHHHHHHHhcccC--------------cHHHHHHhcC----------CCHHHHHHHHHHHHHhcc-----c----
Confidence 5 899999999887522 2345566665 246778888888887752 1
Q ss_pred HHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCcc
Q 008257 355 LCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLK 434 (572)
Q Consensus 355 ~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 434 (572)
+...++.|..+++++ ++.||..|+.+|..+..
T Consensus 773 ---~~~~~~~L~~ll~D~-d~~VR~aA~~aLg~~g~-------------------------------------------- 804 (897)
T PRK13800 773 ---GAPAGDAVRALTGDP-DPLVRAAALAALAELGC-------------------------------------------- 804 (897)
T ss_pred ---cchhHHHHHHHhcCC-CHHHHHHHHHHHHhcCC--------------------------------------------
Confidence 112368899999998 89999999999976521
Q ss_pred chhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHH
Q 008257 435 ETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVE 514 (572)
Q Consensus 435 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~ 514 (572)
....+++|+..|.+.+..|+..|+.+|..+... .+++.|+.+| .+++..++..|+++|.
T Consensus 805 ------~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~--------------~a~~~L~~~L-~D~~~~VR~~A~~aL~ 863 (897)
T PRK13800 805 ------PPDDVAAATAALRASAWQVRQGAARALAGAAAD--------------VAVPALVEAL-TDPHLDVRKAAVLALT 863 (897)
T ss_pred ------cchhHHHHHHHhcCCChHHHHHHHHHHHhcccc--------------chHHHHHHHh-cCCCHHHHHHHHHHHh
Confidence 011446789999999999999999999977521 2458899999 5999999999999998
Q ss_pred HHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHh
Q 008257 515 RILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557 (572)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~ 557 (572)
++-..+ .....|...+.+.|..||+.|.+||.+
T Consensus 864 ~~~~~~----------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 864 RWPGDP----------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred ccCCCH----------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 862111 122478899999999999999999975
No 30
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=1.2e-10 Score=115.93 Aligned_cols=377 Identities=15% Similarity=0.203 Sum_probs=255.9
Q ss_pred HHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCC
Q 008257 56 LAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHL 134 (572)
Q Consensus 56 aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~ 134 (572)
|...|.|++.+-..-...++..+ ..||+.|.-++.+.-......|..|+-..+|+..|.+.|.|..|+++..+.+
T Consensus 283 a~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h---- 358 (791)
T KOG1222|consen 283 AVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQH---- 358 (791)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCC----
Confidence 44567778776555556667777 9999999999999999999999999999999999999999999999997754
Q ss_pred CcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHH
Q 008257 135 PMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIK 214 (572)
Q Consensus 135 ~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~ 214 (572)
++++......|.|++..+ ..|..|+
T Consensus 359 -~dL~~~tl~LlfNlSFD~------------------------------------------------------glr~KMv 383 (791)
T KOG1222|consen 359 -PDLRKATLMLLFNLSFDS------------------------------------------------------GLRPKMV 383 (791)
T ss_pred -HHHHHHHHHHhhhccccc------------------------------------------------------cccHHHh
Confidence 677777777777775422 2467788
Q ss_pred hcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCc
Q 008257 215 SSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERD 294 (572)
Q Consensus 215 ~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~ 294 (572)
..|-+|.|+.+|.+++. ..-|++.|..++-++... ..+... .+|+.|++.+-++.. .++-.+-+..--||+. +
T Consensus 384 ~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K--~MfayT-dci~~lmk~v~~~~~-~~vdl~lia~ciNl~l-n 456 (791)
T KOG1222|consen 384 NGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAK--AMFAYT-DCIKLLMKDVLSGTG-SEVDLALIALCINLCL-N 456 (791)
T ss_pred hccchHHHHHHhCCccc--chhhhhhhhhhccCcHHH--HHHHHH-HHHHHHHHHHHhcCC-ceecHHHHHHHHHHHh-c
Confidence 89999999999987653 456778888887543221 123333 789999998876654 2443333333346666 5
Q ss_pred HHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCc
Q 008257 295 LGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGL 374 (572)
Q Consensus 295 ~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 374 (572)
..+.+.+++..++..|...--..+ ..+ ....+.+++++ +...+..+++ .+.-|...++...+
T Consensus 457 kRNaQlvceGqgL~~LM~ra~k~~----------D~l---LmK~vRniSqH---eg~tqn~Fid--yvgdLa~i~~nd~~ 518 (791)
T KOG1222|consen 457 KRNAQLVCEGQGLDLLMERAIKSR----------DLL---LMKVVRNISQH---EGATQNMFID--YVGDLAGIAKNDNS 518 (791)
T ss_pred cccceEEecCcchHHHHHHHhccc----------chH---HHHHHHHhhhc---cchHHHHHHH--HHHHHHHHhhcCch
Confidence 555678888888887765432211 111 33344556653 3333444433 34556666666534
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcC
Q 008257 375 DKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDH 454 (572)
Q Consensus 375 ~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~ 454 (572)
+..-.+....|+|+.-.+..+.++ +.+..-||-+-..|..
T Consensus 519 E~F~~EClGtlanL~v~dldw~~i----------------------------------------lq~~~LvPw~k~~L~p 558 (791)
T KOG1222|consen 519 ESFGLECLGTLANLKVTDLDWAKI----------------------------------------LQSENLVPWMKTQLQP 558 (791)
T ss_pred HHHHHHHHHHHhhcccCCCCHHHH----------------------------------------HhhccccHHHHHhhcC
Confidence 444455666666665433322221 2234455655555543
Q ss_pred --CCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcC-CHHHHHHHHHHHHHHHcchhhhhhhcCCCC
Q 008257 455 --TNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKR-TENLQRRAVWVVERILRTDDIAYEVSGDPN 531 (572)
Q Consensus 455 --~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~ 531 (572)
...+.+...+-++++++.|. ..+..+..+|-|+.++++|+..+ |+++......++..+..|+-.++-......
T Consensus 559 ga~eddLvL~~vi~~GT~a~d~----~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~ 634 (791)
T KOG1222|consen 559 GADEDDLVLQIVIACGTMARDL----DCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETA 634 (791)
T ss_pred CccchhhhhHHHHHhhhhhhhh----HHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34467777888899998764 45677888999999999996433 456667777888888889766665544444
Q ss_pred chHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257 532 VSTALVDAFQHADYRTRQIAERALKHIDK 560 (572)
Q Consensus 532 ~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~ 560 (572)
.+.-|++++++.+.++|+..-.+|--++.
T Consensus 635 ~~AylIDLMHDkN~eiRkVCDn~LdIiae 663 (791)
T KOG1222|consen 635 LGAYLIDLMHDKNAEIRKVCDNALDIIAE 663 (791)
T ss_pred chHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 44589999999999999988888876654
No 31
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.28 E-value=2.4e-09 Score=116.76 Aligned_cols=287 Identities=15% Similarity=0.187 Sum_probs=194.4
Q ss_pred HHHHHccC--CHHHHHHHHHHHHHh-ccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcC
Q 008257 41 LLTQILEG--PQETKLSLAAFLGDL-ALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAG 117 (572)
Q Consensus 41 Lv~~L~~~--~~~~~~~aa~~L~~l-~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G 117 (572)
+.+.+.+. +...+.++..-|.-+ ....+.. .|.+..++++.+.+...++-+.-++..+...++..-.+
T Consensus 9 l~~~~~~~~~~~~~~~~~l~kli~~~~~G~~~~-----~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l---- 79 (526)
T PF01602_consen 9 LAKILNSFKIDISKKKEALKKLIYLMMLGYDIS-----FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL---- 79 (526)
T ss_dssp HHHHHHCSSTHHHHHHHHHHHHHHHHHTT---G-----STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH----
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCc-----hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH----
Confidence 34455544 444555554333322 2222221 34499999999999999999998888888765542222
Q ss_pred ChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHH
Q 008257 118 ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLV 197 (572)
Q Consensus 118 ~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~ 197 (572)
++..|.+=|.++ ++.++..|..+|+++.... ..+..++.+.+++.++++.++..|+.++.
T Consensus 80 ~~n~l~kdl~~~-----n~~~~~lAL~~l~~i~~~~---------------~~~~l~~~v~~ll~~~~~~VRk~A~~~l~ 139 (526)
T PF01602_consen 80 IINSLQKDLNSP-----NPYIRGLALRTLSNIRTPE---------------MAEPLIPDVIKLLSDPSPYVRKKAALALL 139 (526)
T ss_dssp HHHHHHHHHCSS-----SHHHHHHHHHHHHHH-SHH---------------HHHHHHHHHHHHHHSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCC-----CHHHHHHHHhhhhhhcccc---------------hhhHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 566666666653 3788999999999986421 22457888899999999999999999999
Q ss_pred HccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCCh
Q 008257 198 GLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGIS 277 (572)
Q Consensus 198 ~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~ 277 (572)
.+...... .+... .++.+..+|.++++.++..|+.++..+ +..++.....+. ..+..|.+++..+++
T Consensus 140 ~i~~~~p~------~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~---~~~~~L~~~l~~~~~-- 206 (526)
T PF01602_consen 140 KIYRKDPD------LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIP---KLIRILCQLLSDPDP-- 206 (526)
T ss_dssp HHHHHCHC------CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHH---HHHHHHHHHHTCCSH--
T ss_pred HHhccCHH------HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHH---HHHHHhhhcccccch--
Confidence 88764321 11122 588999999989999999999999999 322221111122 245566666666665
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHH
Q 008257 278 KEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCC 357 (572)
Q Consensus 278 ~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~ 357 (572)
-.+...+.++..+...++..... ...++.+..++++. ...+.-.++.++..+. .++. .
T Consensus 207 ~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~----------~~~V~~e~~~~i~~l~----~~~~-----~ 264 (526)
T PF01602_consen 207 WLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSS----------SPSVVYEAIRLIIKLS----PSPE-----L 264 (526)
T ss_dssp HHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHS----SSHH-----H
T ss_pred HHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhcc----------ccHHHHHHHHHHHHhh----cchH-----H
Confidence 67888899999988766555421 35678888888752 4556667888888776 2344 2
Q ss_pred HcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 008257 358 EHNLAALFIELLQSNGLDKVQMVSATALENLSLES 392 (572)
Q Consensus 358 ~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~ 392 (572)
-..++++|+.+|.++ ++.+|..+..+|..++...
T Consensus 265 ~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 265 LQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHC
T ss_pred HHhhHHHHHHHhhcc-cchhehhHHHHHHHhhccc
Confidence 335678999999987 8889999999998887654
No 32
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.28 E-value=4.9e-11 Score=102.28 Aligned_cols=115 Identities=22% Similarity=0.298 Sum_probs=102.7
Q ss_pred HHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC-cchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCC
Q 008257 31 QMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN-SDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEP 108 (572)
Q Consensus 31 ~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~-~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~ 108 (572)
.+++.|++++|+++|++++...+..++.+|.+++.. ++.+..+.+.|+ |.|+++|+++++.++..|+++|.+|+.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467899999999999999999999999999999985 777777777666 999999999999999999999999998764
Q ss_pred -cHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHH
Q 008257 109 -SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVV 150 (572)
Q Consensus 109 -~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla 150 (572)
....+++.|+++.|+++|... +..+++.++++|.||+
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~-----~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSS-----NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcC-----CHHHHHHHHHHHHHhh
Confidence 466678999999999999864 3789999999999996
No 33
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=9.1e-08 Score=105.65 Aligned_cols=466 Identities=14% Similarity=0.121 Sum_probs=280.7
Q ss_pred CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccC-CHHHHHHHHHHHHHhccC------cchhHHHHhh
Q 008257 4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEG-PQETKLSLAAFLGDLALN------SDVKVLVART 76 (572)
Q Consensus 4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~~~------~~~k~~i~~~ 76 (572)
+.|.|.+++..|.++|.++...+. .++.|..++..+ ++++|..||-.++++... .++|..|.
T Consensus 13 l~spDn~vr~~Ae~~l~~~~~~~~---------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~sik-- 81 (1075)
T KOG2171|consen 13 LLSPDNEVRRQAEEALETLAKTEP---------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIK-- 81 (1075)
T ss_pred hcCCCchHHHHHHHHHHHhhcccc---------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH--
Confidence 457788889999999998887553 567777777754 578888888888877542 23333322
Q ss_pred hHHHHHHhccc-CCHHHHHHHHHHHHHhhcCC--CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC
Q 008257 77 VGSCLINIMKS-GNMQAREAALKALNQISSCE--PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG 153 (572)
Q Consensus 77 g~~~Lv~lL~s-~~~~~~~~A~~aL~~Ls~~~--~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~ 153 (572)
..|+....+ ..+.+++.-+.++..++.+. +.| .+.++.|++..+|+ ++..|+.|..+|+.+...-
T Consensus 82 --s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~W-----Pell~~L~q~~~S~-----~~~~rE~al~il~s~~~~~ 149 (1075)
T KOG2171|consen 82 --SSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKW-----PELLQFLFQSTKSP-----NPSLRESALLILSSLPETF 149 (1075)
T ss_pred --HHHHHHHHhccchHHHHHHHHHHHHHHHhccccch-----HHHHHHHHHHhcCC-----CcchhHHHHHHHHhhhhhh
Confidence 555555555 45677888888888888752 222 23455555555554 4889999999999997532
Q ss_pred CCCCccccCCCccccchhhhHHHHHHHH----hcCChhHHHHHHHHHHHccCCCCccHHHHHHHHh--cCChHHHHHHhc
Q 008257 154 HDFDSITVGPDNQTLVSEDIVHNLLHLI----SNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKS--SGATISLVQFVE 227 (572)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~~~i~~Lv~lL----~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~--~g~i~~Lv~lL~ 227 (572)
.+ ...+.++.+..++ ..++..++..+++++..++...++....+..++. -+.+..+-..+.
T Consensus 150 ~~-------------~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~ 216 (1075)
T KOG2171|consen 150 GN-------------TLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQ 216 (1075)
T ss_pred cc-------------ccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhh
Confidence 21 1123344555555 4555569999999999887644221233344332 123334444555
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHh--CC
Q 008257 228 APQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLD--EG 305 (572)
Q Consensus 228 ~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~--~g 305 (572)
.++.+.-..+..+|-.+....+.-+...+. ..+..-.++..+.+-....|..|+-.|..++..-+...+..-. .-
T Consensus 217 ~~d~~~a~~~l~~l~El~e~~pk~l~~~l~---~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~ 293 (1075)
T KOG2171|consen 217 DGDDDAAKSALEALIELLESEPKLLRPHLS---QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHT 293 (1075)
T ss_pred ccchHHHHHHHHHHHHHHhhchHHHHHHHH---HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhcc
Confidence 666666677778887777654433332332 2344445555554422478888988888877653333332222 11
Q ss_pred ChHHHHHHHhhhccCCCCCC--c---ch-hhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHH
Q 008257 306 AFGLIFSRVKSIQLGETRGS--R---FV-TPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQM 379 (572)
Q Consensus 306 ~l~~Lv~lL~~~~~~~~~~~--~---~~-~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~ 379 (572)
.++.++..+.+...+.-+.. . .. ..-...|..+|-+++.++ .++..- .-.++.+-.+|.++ +..-|.
T Consensus 294 lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L--~g~~v~----p~~~~~l~~~l~S~-~w~~R~ 366 (1075)
T KOG2171|consen 294 LVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHL--GGKQVL----PPLFEALEAMLQST-EWKERH 366 (1075)
T ss_pred HHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcC--Chhheh----HHHHHHHHHHhcCC-CHHHHH
Confidence 23333333332211100000 0 00 011234666777777664 233211 12345566777787 788888
Q ss_pred HHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhH
Q 008257 380 VSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKV 459 (572)
Q Consensus 380 ~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v 459 (572)
.|..||..++....+.-. .. =...++-.+..|.++++.|
T Consensus 367 AaL~Als~i~EGc~~~m~-------------------------------------~~----l~~Il~~Vl~~l~DphprV 405 (1075)
T KOG2171|consen 367 AALLALSVIAEGCSDVMI-------------------------------------GN----LPKILPIVLNGLNDPHPRV 405 (1075)
T ss_pred HHHHHHHHHHcccHHHHH-------------------------------------HH----HHHHHHHHHhhcCCCCHHH
Confidence 888898888764432211 00 0125667788899999999
Q ss_pred HHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc--hhhhhhhcCCCCch-HHH
Q 008257 460 VEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT--DDIAYEVSGDPNVS-TAL 536 (572)
Q Consensus 460 ~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~~~~-~~L 536 (572)
+-+|+.|++.++.|-. ...+.-...--++.|+..+...+++.++..|+.++-+++.. .+.-..+-. ++. +.|
T Consensus 406 r~AA~naigQ~stdl~---p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd--~lm~~~l 480 (1075)
T KOG2171|consen 406 RYAALNAIGQMSTDLQ---PEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD--GLMEKKL 480 (1075)
T ss_pred HHHHHHHHHhhhhhhc---HHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH--HHHHHHH
Confidence 9999999999998733 22222333344567888885566789999999999988843 222222221 122 245
Q ss_pred HHHhhcCCchhHHHHHHHHHhhccc
Q 008257 537 VDAFQHADYRTRQIAERALKHIDKI 561 (572)
Q Consensus 537 v~ll~~~~~~~~~~Aa~aL~~L~~~ 561 (572)
..+++++.+.+|+-|..+|+..+-.
T Consensus 481 ~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 481 LLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHH
Confidence 5577889999999999999987653
No 34
>PTZ00429 beta-adaptin; Provisional
Probab=99.17 E-value=3e-07 Score=101.57 Aligned_cols=292 Identities=12% Similarity=0.093 Sum_probs=186.4
Q ss_pred cHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcC
Q 008257 38 LQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAG 117 (572)
Q Consensus 38 i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G 117 (572)
+..|.+-+.+.++.+|..|.++|+.+-.. .+.+.-.+++.+.|.+.++.+|..|+-|+.++-..++ +.+.+.|
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~ 179 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQD 179 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccc
Confidence 44555666677777777777766654331 2333334778888999999999999999999976444 3345788
Q ss_pred ChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHH
Q 008257 118 ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLV 197 (572)
Q Consensus 118 ~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~ 197 (572)
.++.|.++|... ++.+..+|..+|..+...+++. .-...+.+..|+..|..-++-.|...+..|.
T Consensus 180 ~~~~L~~LL~D~-----dp~Vv~nAl~aL~eI~~~~~~~----------l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~ 244 (746)
T PTZ00429 180 FKKDLVELLNDN-----NPVVASNAAAIVCEVNDYGSEK----------IESSNEWVNRLVYHLPECNEWGQLYILELLA 244 (746)
T ss_pred hHHHHHHHhcCC-----CccHHHHHHHHHHHHHHhCchh----------hHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 999999998753 4889999999999997643210 1123455667777776667777888888886
Q ss_pred HccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCCh
Q 008257 198 GLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGIS 277 (572)
Q Consensus 198 ~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~ 277 (572)
... +....+. ...+..+...|++.++.|.-.|++++.++....+.+..+.... ..-++|+.+++++.
T Consensus 245 ~y~--P~~~~e~------~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~--rl~~pLv~L~ss~~--- 311 (746)
T PTZ00429 245 AQR--PSDKESA------ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV--RVNTALLTLSRRDA--- 311 (746)
T ss_pred hcC--CCCcHHH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH--HHHHHHHHhhCCCc---
Confidence 543 2221122 2457778888999999999999999999986533333333322 12366777754433
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHH
Q 008257 278 KEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCC 357 (572)
Q Consensus 278 ~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~ 357 (572)
+++..++..|..+....+.. |.. -+..+.-...+ ..-++...+..|..++ ++++...+.
T Consensus 312 eiqyvaLr~I~~i~~~~P~l---f~~--~~~~Ff~~~~D-----------p~yIK~~KLeIL~~La-----ne~Nv~~IL 370 (746)
T PTZ00429 312 ETQYIVCKNIHALLVIFPNL---LRT--NLDSFYVRYSD-----------PPFVKLEKLRLLLKLV-----TPSVAPEIL 370 (746)
T ss_pred cHHHHHHHHHHHHHHHCHHH---HHH--HHHhhhcccCC-----------cHHHHHHHHHHHHHHc-----CcccHHHHH
Confidence 78887877665554433322 111 02222222222 1235667788888887 344433332
Q ss_pred HcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 008257 358 EHNLAALFIELLQSNGLDKVQMVSATALENLSLE 391 (572)
Q Consensus 358 ~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~ 391 (572)
.-|.+..... +.+.++.+..+++.++..
T Consensus 371 -----~EL~eYa~d~-D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 371 -----KELAEYASGV-DMVFVVEVVRAIASLAIK 398 (746)
T ss_pred -----HHHHHHhhcC-CHHHHHHHHHHHHHHHHh
Confidence 3344555555 778888999999888753
No 35
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=5.5e-08 Score=107.33 Aligned_cols=403 Identities=19% Similarity=0.188 Sum_probs=240.9
Q ss_pred CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHH----HHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhh-h
Q 008257 4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLT----QILEGPQETKLSLAAFLGDLAL-NSDVKVLVART-V 77 (572)
Q Consensus 4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~----~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~-g 77 (572)
.+|+|+..++.|..+|..+...-.|. ..+.++.+.. .+.+++..+|..|+.++...+. .+.++.....- .
T Consensus 127 ~~S~~~~~rE~al~il~s~~~~~~~~----~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~ 202 (1075)
T KOG2171|consen 127 TKSPNPSLRESALLILSSLPETFGNT----LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRD 202 (1075)
T ss_pred hcCCCcchhHHHHHHHHhhhhhhccc----cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 47999999999999999998733232 2344444444 4455555599999999999877 43444444332 2
Q ss_pred H-HHHHHhc----ccCCHHHHHHHHHHHHHhhcCCCc--HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHH
Q 008257 78 G-SCLINIM----KSGNMQAREAALKALNQISSCEPS--AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVV 150 (572)
Q Consensus 78 ~-~~Lv~lL----~s~~~~~~~~A~~aL~~Ls~~~~~--~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla 150 (572)
. |.++..| +.++.+.-..++.+|-.|+...+- +..+ ...|..-.++-.+. +....+|..|.+.|..++
T Consensus 203 llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l--~~ii~~~l~Ia~n~---~l~~~~R~~ALe~ivs~~ 277 (1075)
T KOG2171|consen 203 LLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHL--SQIIQFSLEIAKNK---ELENSIRHLALEFLVSLS 277 (1075)
T ss_pred HhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHH--HHHHHHHHHHhhcc---cccHHHHHHHHHHHHHHH
Confidence 2 6666555 456666678888888888865432 2222 12344444555443 234677888888888777
Q ss_pred hcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCC
Q 008257 151 NSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ 230 (572)
Q Consensus 151 ~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 230 (572)
...+...+.. .......++.++.++.....+ ++.-. . +-++.++
T Consensus 278 e~Ap~~~k~~------~~~~~~lv~~~l~~mte~~~D-------------------~ew~~----~-------d~~ded~ 321 (1075)
T KOG2171|consen 278 EYAPAMCKKL------ALLGHTLVPVLLAMMTEEEDD-------------------DEWSN----E-------DDLDEDD 321 (1075)
T ss_pred HhhHHHhhhc------hhhhccHHHHHHHhcCCcccc-------------------hhhcc----c-------ccccccc
Confidence 6422100000 001111222222222211100 00000 0 0001111
Q ss_pred -HHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHH
Q 008257 231 -NDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGL 309 (572)
Q Consensus 231 -~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~ 309 (572)
..-...|..+|-.++.+.+.+. +.. -.++.+-.+|.+++- ..|.+|+.+|+.++.+..+....... .+++.
T Consensus 322 ~~~~~~~A~~~lDrlA~~L~g~~---v~p--~~~~~l~~~l~S~~w--~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~ 393 (1075)
T KOG2171|consen 322 EETPYRAAEQALDRLALHLGGKQ---VLP--PLFEALEAMLQSTEW--KERHAALLALSVIAEGCSDVMIGNLP-KILPI 393 (1075)
T ss_pred ccCcHHHHHHHHHHHHhcCChhh---ehH--HHHHHHHHHhcCCCH--HHHHHHHHHHHHHHcccHHHHHHHHH-HHHHH
Confidence 1235577788888887765442 222 256777788888884 89999999999998877665442211 23344
Q ss_pred HHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 008257 310 IFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLS 389 (572)
Q Consensus 310 Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls 389 (572)
.++.|++ +++-++-.|+.++..++..+ -|+.++... .-++|.|+..+.+..+++|+.+||.|+-|++
T Consensus 394 Vl~~l~D----------phprVr~AA~naigQ~stdl--~p~iqk~~~-e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~ 460 (1075)
T KOG2171|consen 394 VLNGLND----------PHPRVRYAALNAIGQMSTDL--QPEIQKKHH-ERLPPALIALLDSTQNVRVQAHAAAALVNFS 460 (1075)
T ss_pred HHhhcCC----------CCHHHHHHHHHHHHhhhhhh--cHHHHHHHH-HhccHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 4444444 35667888999999998653 466666544 4677899999999878999999999999998
Q ss_pred hhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchH-HHHHhhcCCCHhHHHHHHHHHH
Q 008257 390 LESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVE-KLIALLDHTNEKVVEASLAALS 468 (572)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~-~Lv~lL~~~~~~v~~~A~~aL~ 468 (572)
....... +-| | =.+... .|..|+.++.+.+++.++.||+
T Consensus 461 E~~~~~~--------------------------l~p------------Y--Ld~lm~~~l~~L~~~~~~~v~e~vvtaIa 500 (1075)
T KOG2171|consen 461 EECDKSI--------------------------LEP------------Y--LDGLMEKKLLLLLQSSKPYVQEQAVTAIA 500 (1075)
T ss_pred HhCcHHH--------------------------HHH------------H--HHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 6432110 000 0 012233 3334557889999999999999
Q ss_pred HhhhcCc-cchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257 469 TVIDDGV-DIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL 517 (572)
Q Consensus 469 ~l~~~~~-~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~ 517 (572)
..+.... .+......+ +|.|..+|+...+++.++-....++++.
T Consensus 501 svA~AA~~~F~pY~d~~-----Mp~L~~~L~n~~~~d~r~LrgktmEcis 545 (1075)
T KOG2171|consen 501 SVADAAQEKFIPYFDRL-----MPLLKNFLQNADDKDLRELRGKTMECLS 545 (1075)
T ss_pred HHHHHHhhhhHhHHHHH-----HHHHHHHHhCCCchhhHHHHhhHHHHHH
Confidence 9986432 222223332 4678888864444777766666665554
No 36
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.13 E-value=6.6e-10 Score=95.19 Aligned_cols=116 Identities=20% Similarity=0.346 Sum_probs=99.9
Q ss_pred hhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHc
Q 008257 439 LLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILR 518 (572)
Q Consensus 439 l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~ 518 (572)
+++.|++++|+++|.+++..++..++.+|.+++.+.+ .....+.+.|+++.++++| .++++.++..++++|.+++.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~~~i~~l~~~l-~~~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNN---DNIQAVVEAGGLPALVQLL-KSEDEEVVKAALWALRNLAA 78 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCH---HHHHHHHHCCChHHHHHHH-hCCCHHHHHHHHHHHHHHcc
Confidence 4688999999999999999999999999999997643 4466788899999999999 58899999999999999997
Q ss_pred ch-hhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhc
Q 008257 519 TD-DIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHID 559 (572)
Q Consensus 519 ~~-~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~ 559 (572)
+. .....+...+.+ +.|++++.+++.++++.|.++|.+|.
T Consensus 79 ~~~~~~~~~~~~g~l-~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 79 GPEDNKLIVLEAGGV-PKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred CcHHHHHHHHHCCCh-HHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 64 444555544444 59999999999999999999999985
No 37
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.08 E-value=3.8e-08 Score=101.07 Aligned_cols=323 Identities=11% Similarity=0.092 Sum_probs=215.5
Q ss_pred hhhHHHHHHHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhc-----CChHHHHHHhcCCCHHHHHHHHHHHHHc
Q 008257 171 EDIVHNLLHLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSS-----GATISLVQFVEAPQNDLRLASIELIQNL 244 (572)
Q Consensus 171 ~~~i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~-----g~i~~Lv~lL~~~~~~v~~~a~~~L~~L 244 (572)
+..+..++++++. +.+++.+..+..+..+..... .....+.+. ....+++.+|..++.-++..|+..|..+
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~---~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l 128 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDD---TRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKL 128 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhch---HHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHH
Confidence 3567778888864 556777777777777665532 122334443 4567888899988888999999999998
Q ss_pred CCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCC
Q 008257 245 SPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRG 324 (572)
Q Consensus 245 s~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~ 324 (572)
.............. -.+..|...|.++++ ...+..|+.++..|.. .++.+..+++.+++++|+.+|+...
T Consensus 129 ~~~~~~~~~~~~l~--~~~~~l~~~l~~~~~-~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~------ 198 (429)
T cd00256 129 ACFGLAKMEGSDLD--YYFNWLKEQLNNITN-NDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNAT------ 198 (429)
T ss_pred HhcCccccchhHHH--HHHHHHHHHhhccCC-cchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhcc------
Confidence 75422211111111 133456667766543 3667777888888877 6688889999999999999998521
Q ss_pred CcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCC---
Q 008257 325 SRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPEL--- 401 (572)
Q Consensus 325 ~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~--- 401 (572)
...+++-.++-.++-++. +++......+.+.||.|+++++....+++-+.+..+|.|+.....+.......
T Consensus 199 --~~~Ql~Y~~ll~lWlLSF----~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~ 272 (429)
T cd00256 199 --LGFQLQYQSIFCIWLLTF----NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQ 272 (429)
T ss_pred --ccHHHHHHHHHHHHHHhc----cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHH
Confidence 234667778888888884 56667777889999999999998757888899999999998754322110000
Q ss_pred -CCCCCCcccccccc----CCCc--------------------------------cccccccccC--ccCccchhhhh--
Q 008257 402 -PPSGFCASIFPCFS----KQPV--------------------------------ITGLCRLHRG--LCSLKETFCLL-- 440 (572)
Q Consensus 402 -~~~~~~~~~~~~~~----~~~~--------------------------------~~~~c~~~~~--~~~~~~~~~l~-- 440 (572)
...+ ...++..+. .+++ ...=.|+|.. .| .+|...+-
T Consensus 273 mv~~~-l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW-~EN~~kf~~~ 350 (429)
T cd00256 273 MVQCK-VLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFW-RENADRLNEK 350 (429)
T ss_pred HHHcC-hHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHH-HHHHHHHHhc
Confidence 0000 000011111 0000 0122366742 22 12221222
Q ss_pred hccchHHHHHhhc-CCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHc
Q 008257 441 EGHAVEKLIALLD-HTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILR 518 (572)
Q Consensus 441 ~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~ 518 (572)
+-..+..|+++|+ +.++.+...|+.=++.++.+.+ .+...+.+.||=..+++++ +|+|++++..|..+++++.-
T Consensus 351 ~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P---~gr~i~~~lg~K~~vM~Lm-~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 351 NYELLKILIHLLETSVDPIILAVACHDIGEYVRHYP---RGKDVVEQLGGKQRVMRLL-NHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred chHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCc---cHHHHHHHcCcHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 1225678999994 6788899999999999998754 6778888999988999999 69999999999999999863
No 38
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=7.1e-08 Score=101.92 Aligned_cols=305 Identities=13% Similarity=0.139 Sum_probs=222.1
Q ss_pred hHHHHHHhcccCC-HHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257 77 VGSCLINIMKSGN-MQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD 155 (572)
Q Consensus 77 g~~~Lv~lL~s~~-~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~ 155 (572)
-++.|++-+.+.. .+-|+.|++.|..++.. .+..|-+-|++||++.|.... .++++-..+..++.++..++.+
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~srk---YR~~Vga~Gmk~li~vL~~D~---~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRK---YREEVGAQGMKPLIQVLQRDY---MDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHH---HHHHHHHcccHHHHHHHhhcc---CCHHHHHHHHHHHHHHHhcCcc
Confidence 3488888887655 57799999999998852 245577889999999998654 3478888999999999987742
Q ss_pred CCc----cccCCCc-----cccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHh-cCChHHHHHH
Q 008257 156 FDS----ITVGPDN-----QTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKS-SGATISLVQF 225 (572)
Q Consensus 156 ~~~----~~~~~~~-----~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~-~g~i~~Lv~l 225 (572)
... .-.++-| ..+...+.|..|+..+..-+-.++..++..|.++-+... .+++.++.. .-||..|+.+
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~--~e~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP--TELQDALLVSPMGISKLMDL 174 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC--HHHHHHHHHCchhHHHHHHH
Confidence 210 0111112 345678899999999999999999999999998866543 367777554 5699999999
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC--ChHHHHHHHHHHhcCCCCcHHHHHHHHh
Q 008257 226 VEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG--ISKEQAAAVGLLAELPERDLGLTRQMLD 303 (572)
Q Consensus 226 L~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~--~~~~~~~A~~~L~~L~~~~~~~~~~l~~ 303 (572)
|.+....+|-.++-+|..|.++. ..+++.+.-. ++...|..+++.... -.-+-..++..|-||-+.+..+++.|.+
T Consensus 175 L~DsrE~IRNe~iLlL~eL~k~n-~~IQKlVAFE-NaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE 252 (970)
T KOG0946|consen 175 LRDSREPIRNEAILLLSELVKDN-SSIQKLVAFE-NAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE 252 (970)
T ss_pred HhhhhhhhchhHHHHHHHHHccC-chHHHHHHHH-HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc
Confidence 99988889999999999999884 4565544433 789999999976542 1136678889999999988888889999
Q ss_pred CCChHHHHHHHhhhccCC----CCCCcchhhHHHHHHHHHHHHhccCCCCh-----HHHHHHHHcCchHHHHHHhccCC-
Q 008257 304 EGAFGLIFSRVKSIQLGE----TRGSRFVTPFLEGLLSVLARVTFVLSDEP-----DAIALCCEHNLAALFIELLQSNG- 373 (572)
Q Consensus 304 ~g~l~~Lv~lL~~~~~~~----~~~~~~~~~~~e~a~~aL~~l~~~~~~~~-----~~~~~i~~~g~i~~Lv~lL~~~~- 373 (572)
.+.||.|..+|.....+. .+......-+. .++.++.-+..+ +|+ .+++.+...+++..|+.++-+++
T Consensus 253 ~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~-~~Lqivr~lVsP--~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~v 329 (970)
T KOG0946|consen 253 GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVI-EALQIVRSLVSP--GNTSSITHQNQKALVSSHLLDVLCTILMHPGV 329 (970)
T ss_pred cccHHHHHhhcCcccccCcccccccHHHHHHHH-HHHHHHHHhcCC--CCcHHHHHHHHHHHHHcchHHHHHHHHcCCCC
Confidence 999999999998644332 11111111111 133344444433 333 36678899999999999998873
Q ss_pred cHHHHHHHHHHHHHhhhhccc
Q 008257 374 LDKVQMVSATALENLSLESKN 394 (572)
Q Consensus 374 ~~~vk~~Aa~aL~~ls~~~~~ 394 (572)
..+++..+..+++++.++...
T Consensus 330 p~dIltesiitvAevVRgn~~ 350 (970)
T KOG0946|consen 330 PADILTESIITVAEVVRGNAR 350 (970)
T ss_pred cHhHHHHHHHHHHHHHHhchH
Confidence 567888888888888765543
No 39
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.4e-07 Score=98.78 Aligned_cols=259 Identities=12% Similarity=0.125 Sum_probs=193.1
Q ss_pred cHHHHHHHcc-CCHHHHHHHHHHHHHhc-c-CcchhHHH-HhhhHHHHHHhcccC-CHHHHHHHHHHHHHhhc-CCCcHH
Q 008257 38 LQPLLTQILE-GPQETKLSLAAFLGDLA-L-NSDVKVLV-ARTVGSCLINIMKSG-NMQAREAALKALNQISS-CEPSAK 111 (572)
Q Consensus 38 i~~Lv~~L~~-~~~~~~~~aa~~L~~l~-~-~~~~k~~i-~~~g~~~Lv~lL~s~-~~~~~~~A~~aL~~Ls~-~~~~~~ 111 (572)
+..|+.=|+. +++..|.+|+.-|+.+- . +++.-..+ .+.-+|.||.+|+.+ +.+.+..|++||.+|+. .++...
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 3444444443 35666777777777643 3 33332222 244459999999974 57999999999999996 577788
Q ss_pred HHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHH
Q 008257 112 VLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECK 191 (572)
Q Consensus 112 ~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~ 191 (572)
.+|+.|+||.|++-|.. -..+++-|++..+|..|++.. +..+...|.+...+..|.-=+..+|..
T Consensus 249 ~vV~~~aIPvl~~kL~~----IeyiDvAEQ~LqALE~iSR~H-----------~~AiL~AG~l~a~LsylDFFSi~aQR~ 313 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLT----IEYIDVAEQSLQALEKISRRH-----------PKAILQAGALSAVLSYLDFFSIHAQRV 313 (1051)
T ss_pred eeecccchHHHHHhhhh----hhhhHHHHHHHHHHHHHHhhc-----------cHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 88999999999987754 245899999999999998743 235667888888888887777889999
Q ss_pred HHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCC--CChhHHHHHhcccCChhhHHhh
Q 008257 192 LLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH--MGHELADALRGAVGQLGSLIRV 269 (572)
Q Consensus 192 a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~--~~~~~~~~i~~~~g~l~~Lv~l 269 (572)
|+.+-.|+|+.-.. ++.... ..++|.|-.+|...|....+.++-.+..++.. .+.+.-+.+... |.|....+|
T Consensus 314 AlaiaaN~Cksi~s-d~f~~v---~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~-dLi~~~~qL 388 (1051)
T KOG0168|consen 314 ALAIAANCCKSIRS-DEFHFV---MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSH-DLITNIQQL 388 (1051)
T ss_pred HHHHHHHHHhcCCC-ccchHH---HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhch-hHHHHHHHH
Confidence 99999999986332 233332 34899999999999988899998888888743 233334567766 888888888
Q ss_pred hccCCC--ChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhh
Q 008257 270 ISENVG--ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS 316 (572)
Q Consensus 270 L~~~~~--~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~ 316 (572)
|.-... ........++.++.++.+.+-..+.+.+.|+...|..+|..
T Consensus 389 lsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 389 LSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 865432 12556677888999998878888899999999999999986
No 40
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.97 E-value=3.2e-07 Score=95.72 Aligned_cols=454 Identities=14% Similarity=0.083 Sum_probs=255.8
Q ss_pred HHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhcccC--CHHHHHHHHHHHHHhhcCC-CcHHHHHHcC
Q 008257 43 TQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKSG--NMQAREAALKALNQISSCE-PSAKVLIHAG 117 (572)
Q Consensus 43 ~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s~--~~~~~~~A~~aL~~Ls~~~-~~~~~iv~~G 117 (572)
..|...+++....+..-..+++. ++++|..+.+.|. |.|..+++.+ .++.+...+.++..+...+ .....+.+.+
T Consensus 16 ~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~ 95 (678)
T KOG1293|consen 16 YRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRII 95 (678)
T ss_pred HhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHh
Confidence 34445555555666666677665 6777777888888 8888888764 4567756666666666544 4578888999
Q ss_pred ChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHH
Q 008257 118 ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLV 197 (572)
Q Consensus 118 ~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~ 197 (572)
.+|.|.++|+.++ +..+++.....+.++-...+..+.. . .......++.+..++..+...+...-+.-..
T Consensus 96 ~ll~Ll~LLs~sD----~~~~le~~l~~lR~Ifet~~~q~~~-~-----s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a 165 (678)
T KOG1293|consen 96 ELLKLLQLLSESD----SLNVLEKTLRCLRTIFETSKYQDKK-M-----SLHLKSIIVKFSLLYSIELKYISRLDVSRAA 165 (678)
T ss_pred hHHHHHHHhcCcc----hHhHHHHHHHHHHHHHhcccccccc-h-----hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Confidence 9999999998752 4678999999999998765433321 1 1233445555555544122222222222222
Q ss_pred HccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHH---HcCCCCChhHH---HHHhcccCChh--hHHhh
Q 008257 198 GLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQ---NLSPHMGHELA---DALRGAVGQLG--SLIRV 269 (572)
Q Consensus 198 ~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~---~Ls~~~~~~~~---~~i~~~~g~l~--~Lv~l 269 (572)
.++... .-+..+..+|....+.-++...+..+|..|...++ .+...++.... ..+... |..+ ...++
T Consensus 166 ~~s~~~----~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~-~v~~r~~v~rL 240 (678)
T KOG1293|consen 166 HLSSTK----DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDK-GVNIRCVVTRL 240 (678)
T ss_pred cccccc----hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhcc-ccchhhhhhhh
Confidence 333333 33555667777777777777777888999888888 55444322211 122332 4443 46666
Q ss_pred hccCCCChHHHHHHHHHHhcCCCCc----HHHH-HHHHhCCC-hHHHHHHHhh-hccCCCCCCcchhhHHHHHHHHHHHH
Q 008257 270 ISENVGISKEQAAAVGLLAELPERD----LGLT-RQMLDEGA-FGLIFSRVKS-IQLGETRGSRFVTPFLEGLLSVLARV 342 (572)
Q Consensus 270 L~~~~~~~~~~~~A~~~L~~L~~~~----~~~~-~~l~~~g~-l~~Lv~lL~~-~~~~~~~~~~~~~~~~e~a~~aL~~l 342 (572)
+.++.. ..+..+...+.++...+ +-.. ..+.+.|- .-.....+.- ..++- ....+.-.....+.++
T Consensus 241 ~k~~~~--s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~-----s~l~~~~~l~c~~a~~ 313 (678)
T KOG1293|consen 241 LKDPDF--SERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGL-----STLDHTNVLFCILARF 313 (678)
T ss_pred hhCCCc--cHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCce-----eehhhhhhhHHHHHHH
Confidence 677665 44444444444332211 1110 01112110 0001111110 00110 0111111122222223
Q ss_pred hccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCcccc
Q 008257 343 TFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITG 422 (572)
Q Consensus 343 ~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (572)
. ..++....+...+|.+++++... .+ . ++....++.-.-.. .
T Consensus 314 ~------sklq~~~~e~~~~~~~~ellf~~-~s-l---~a~~~~~~~i~l~e---------------------------~ 355 (678)
T KOG1293|consen 314 A------SKLQLPQHEEATLKTTTELLFIC-AS-L---AASDEKYRLILLNE---------------------------T 355 (678)
T ss_pred H------HhhhhHHhhhhhhhhHHHHHHHH-HH-H---hhcchhhhHHHhhh---------------------------h
Confidence 2 34455567788889999999875 21 1 11111111000000 0
Q ss_pred ccccccCccC-ccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcC
Q 008257 423 LCRLHRGLCS-LKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKR 501 (572)
Q Consensus 423 ~c~~~~~~~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~ 501 (572)
..+-|.+.|. .....++.+.-.-..+..+....+.....+|+-.+-+++..-.... .......++.+|++++ ..|
T Consensus 356 ~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~---tg~~~~dv~~plvqll-~dp 431 (678)
T KOG1293|consen 356 LILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALR---TGLKRNDVAQPLVQLL-MDP 431 (678)
T ss_pred hhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHH---cCCccchhHHHHHHHh-hCc
Confidence 0011111111 1122223333333344444456777888888777776654211111 1245667889999999 688
Q ss_pred CHHHHHHHHHHHHHHH-cchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhccc
Q 008257 502 TENLQRRAVWVVERIL-RTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKI 561 (572)
Q Consensus 502 ~~~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~ 561 (572)
+-.++..+..+|.|+. .-...+..|...+++. .|..++.+.++.+|..+-|+|.|+.-.
T Consensus 432 ~~~i~~~~lgai~NlVmefs~~kskfl~~ngId-~l~s~~~~~~~n~r~~~~~~Lr~l~f~ 491 (678)
T KOG1293|consen 432 EIMIMGITLGAICNLVMEFSNLKSKFLRNNGID-ILESMLTDPDFNSRANSLWVLRHLMFN 491 (678)
T ss_pred chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHH-HHHHHhcCCCchHHHHHHHHHHHHHhc
Confidence 8899999999999998 4477888888888885 999999999999999999999998654
No 41
>PTZ00429 beta-adaptin; Provisional
Probab=98.93 E-value=7.9e-06 Score=90.49 Aligned_cols=454 Identities=13% Similarity=0.126 Sum_probs=274.2
Q ss_pred HHHHhhccCcchHHHHH--HcCCcHHHHHHHccCCHHHHHHHHHH-HHHhccCcchhHHHHhhhHHHHHHhcccCCHHHH
Q 008257 17 KTLANLEKCENNVRQMA--ENGRLQPLLTQILEGPQETKLSLAAF-LGDLALNSDVKVLVARTVGSCLINIMKSGNMQAR 93 (572)
Q Consensus 17 ~~L~~L~~~~~n~~~i~--~~g~i~~Lv~~L~~~~~~~~~~aa~~-L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~ 93 (572)
++-+++.+.....+.+. ..|=+.-|-+.|.+.+...|.++..- +..+....+... +.+..++++.+.+.+.+
T Consensus 11 ~~~~~~~~~~~~~~~f~~~~kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~-----LF~dVvk~~~S~d~elK 85 (746)
T PTZ00429 11 RIQRKLEETKTGSKYFAQTRRGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSY-----LFVDVVKLAPSTDLELK 85 (746)
T ss_pred HHHHHhhcCCCccccccccccchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchH-----HHHHHHHHhCCCCHHHH
Confidence 45556655444444443 34556777788888887777777754 444555433211 23888899999999999
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhh
Q 008257 94 EAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDI 173 (572)
Q Consensus 94 ~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~ 173 (572)
+-..-.|.+.+...+.-..+ +|..|.+=+.++ ++.+|..|..+++++-.. -..+-.
T Consensus 86 KLvYLYL~~ya~~~pelalL----aINtl~KDl~d~-----Np~IRaLALRtLs~Ir~~---------------~i~e~l 141 (746)
T PTZ00429 86 KLVYLYVLSTARLQPEKALL----AVNTFLQDTTNS-----SPVVRALAVRTMMCIRVS---------------SVLEYT 141 (746)
T ss_pred HHHHHHHHHHcccChHHHHH----HHHHHHHHcCCC-----CHHHHHHHHHHHHcCCcH---------------HHHHHH
Confidence 99999999988754433223 456666666543 488999999988887321 012346
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHH
Q 008257 174 VHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELA 253 (572)
Q Consensus 174 i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~ 253 (572)
++.+.+.+.+.+|.|+..|+-++..+-.... ..+.+.|-++.|.++|...++.|+.+|+.+|..+....+..+
T Consensus 142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~~p------elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l- 214 (746)
T PTZ00429 142 LEPLRRAVADPDPYVRKTAAMGLGKLFHDDM------QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI- 214 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc------ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-
Confidence 7777888888999999999999998865432 123356788899999999999999999999999975543322
Q ss_pred HHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHH
Q 008257 254 DALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLE 333 (572)
Q Consensus 254 ~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e 333 (572)
+... +.+..|+..|..-++ -.|...+.+|....-.+..-. ...+..+...|++ .+..+.=
T Consensus 215 ~l~~---~~~~~Ll~~L~e~~E--W~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~----------~N~AVVl 274 (746)
T PTZ00429 215 ESSN---EWVNRLVYHLPECNE--WGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSH----------QNPAVVM 274 (746)
T ss_pred HHHH---HHHHHHHHHhhcCCh--HHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcC----------CCHHHHH
Confidence 1222 356667777765554 345555666654322121111 1344555566654 2455666
Q ss_pred HHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcccccc
Q 008257 334 GLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPC 413 (572)
Q Consensus 334 ~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~ 413 (572)
.++.++.+++.. .+++..+.+.. .+-++|+.|+. + ++++|..+...|..+....+..-.. . ...|.|
T Consensus 275 ~Aik~il~l~~~--~~~~~~~~~~~-rl~~pLv~L~s-s-~~eiqyvaLr~I~~i~~~~P~lf~~------~--~~~Ff~ 341 (746)
T PTZ00429 275 GAIKVVANLASR--CSQELIERCTV-RVNTALLTLSR-R-DAETQYIVCKNIHALLVIFPNLLRT------N--LDSFYV 341 (746)
T ss_pred HHHHHHHHhcCc--CCHHHHHHHHH-HHHHHHHHhhC-C-CccHHHHHHHHHHHHHHHCHHHHHH------H--HHhhhc
Confidence 788888888743 23444333221 22377787754 4 6789988888887666544332110 0 123444
Q ss_pred ccCCCcc--ccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChH
Q 008257 414 FSKQPVI--TGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIK 491 (572)
Q Consensus 414 ~~~~~~~--~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~ 491 (572)
...++.. ..--.+....|+..|.-. .+.-|.+...+.+.+.+..++++++.++.--+ .... ..+.
T Consensus 342 ~~~Dp~yIK~~KLeIL~~Lane~Nv~~-----IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~---~~a~-----~cV~ 408 (746)
T PTZ00429 342 RYSDPPFVKLEKLRLLLKLVTPSVAPE-----ILKELAEYASGVDMVFVVEVVRAIASLAIKVD---SVAP-----DCAN 408 (746)
T ss_pred ccCCcHHHHHHHHHHHHHHcCcccHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh---HHHH-----HHHH
Confidence 4333320 000000000111122211 34556666677888999999999999995322 2122 3467
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHcc-hhhhhhhcCCCCchHHHHHHh---hcCCchhHHHHHHHHHhhcccC
Q 008257 492 PILDVLLEKRTENLQRRAVWVVERILRT-DDIAYEVSGDPNVSTALVDAF---QHADYRTRQIAERALKHIDKIP 562 (572)
Q Consensus 492 ~L~~lL~~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~Lv~ll---~~~~~~~~~~Aa~aL~~L~~~~ 562 (572)
.|++++. .+.+ ....++.++..+++. ++ .+ +...|++.+ .-.+++++....|+|...+..-
T Consensus 409 ~Ll~ll~-~~~~-~v~e~i~vik~IlrkyP~---~~-----il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I 473 (746)
T PTZ00429 409 LLLQIVD-RRPE-LLPQVVTAAKDIVRKYPE---LL-----MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI 473 (746)
T ss_pred HHHHHhc-CCch-hHHHHHHHHHHHHHHCcc---HH-----HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH
Confidence 8889994 5544 445677788887643 22 11 112455433 2245677777788888776543
No 42
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.2e-07 Score=93.07 Aligned_cols=187 Identities=21% Similarity=0.199 Sum_probs=144.6
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCcc
Q 008257 87 SGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQ 166 (572)
Q Consensus 87 s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~ 166 (572)
+.+++-++.|+.-|..+..+-+|...++..||.++++.+|.+. +..+|+.|+++|+..++++
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~-----~~~lR~~Aa~Vigt~~qNN------------- 155 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENS-----DAELRELAARVIGTAVQNN------------- 155 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCC-----cHHHHHHHHHHHHHHHhcC-------------
Confidence 4677889999999999999999999999999999999988764 3899999999999998753
Q ss_pred ccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCC-HHHHHHHHHHHHHcC
Q 008257 167 TLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ-NDLRLASIELIQNLS 245 (572)
Q Consensus 167 ~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~~L~~Ls 245 (572)
| .++..+.+.||++.|+..|.+++ ..+|..|+.+++.|-
T Consensus 156 -------------------P---------------------~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLI 195 (342)
T KOG2160|consen 156 -------------------P---------------------KSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLI 195 (342)
T ss_pred -------------------H---------------------HHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHH
Confidence 2 34566778999999999998766 478899999999999
Q ss_pred CCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCC
Q 008257 246 PHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGS 325 (572)
Q Consensus 246 ~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~ 325 (572)
++...... .+... ++...|...|.+++.....+..++..+..+...+......+...|.-..+..+...
T Consensus 196 Rn~~~g~~-~fl~~-~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~--------- 264 (342)
T KOG2160|consen 196 RNNKPGQD-EFLKL-NGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISS--------- 264 (342)
T ss_pred hcCcHHHH-HHHhc-CCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhc---------
Confidence 88655554 44444 67999999999875434788889999999987666665544555555555555544
Q ss_pred cchhhHHHHHHHHHHHHh
Q 008257 326 RFVTPFLEGLLSVLARVT 343 (572)
Q Consensus 326 ~~~~~~~e~a~~aL~~l~ 343 (572)
...++.|.++.++..+.
T Consensus 265 -l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 265 -LDFEVNEAALTALLSLL 281 (342)
T ss_pred -cchhhhHHHHHHHHHHH
Confidence 23455677777666544
No 43
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2e-07 Score=91.49 Aligned_cols=186 Identities=21% Similarity=0.191 Sum_probs=154.0
Q ss_pred CCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHH
Q 008257 5 KSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLI 82 (572)
Q Consensus 5 ~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv 82 (572)
.|-|++-.+.|..-|..+.++-+|-..+...|+..+++.+|.+++.++|..||+.++..+. ++.....+.+.|+ +.|+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 4667788899999999999988899999999999999999999999999999999999998 5567788888888 9999
Q ss_pred HhcccCCH-HHHHHHHHHHHHhhcCCC-cHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccc
Q 008257 83 NIMKSGNM-QAREAALKALNQISSCEP-SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSIT 160 (572)
Q Consensus 83 ~lL~s~~~-~~~~~A~~aL~~Ls~~~~-~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~ 160 (572)
..|.++++ .++..|+.|+..|-.+.+ ........+|...|..+|.+++ .+..+|..++..+.++.....+...
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~---~~~~lkrK~~~Ll~~Ll~~~~s~~d-- 247 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNN---TSVKLKRKALFLLSLLLQEDKSDED-- 247 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCC---cchHHHHHHHHHHHHHHHhhhhhhh--
Confidence 99997554 678999999999998654 4667778999999999999853 3488999999999999875443221
Q ss_pred cCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccC
Q 008257 161 VGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTS 201 (572)
Q Consensus 161 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~ 201 (572)
.+...++...++.+..+.+.++++.++.++..+..
T Consensus 248 ------~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 248 ------IASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred ------HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 34456667777778788888999988887766543
No 44
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.77 E-value=1.6e-05 Score=79.30 Aligned_cols=349 Identities=14% Similarity=0.126 Sum_probs=220.1
Q ss_pred HHHHHhccc-CCHHHHHHHHHHHHHhhcCCCcHHHHHH-------cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHH
Q 008257 79 SCLINIMKS-GNMQAREAALKALNQISSCEPSAKVLIH-------AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVV 150 (572)
Q Consensus 79 ~~Lv~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~~iv~-------~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla 150 (572)
.+++.+|+. ..++.....+..+..+-+.+..+..+.+ .-.-++.+++|... +.-+.+.++++++.++
T Consensus 68 ~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~-----d~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 68 KTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQ-----DTFIVEMSFRILSKLA 142 (442)
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcC-----ChHHHHHHHHHHHHHH
Confidence 788888886 4456677888888888777776655542 23356778888754 2667777999999998
Q ss_pred hcCCCCCccccCCCccccchhh-hHHHHHHHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcC
Q 008257 151 NSGHDFDSITVGPDNQTLVSED-IVHNLLHLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA 228 (572)
Q Consensus 151 ~~~~~~~~~~~~~~~~~l~~~~-~i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~ 228 (572)
..+...- . ..... ....|-..+++ ..++...-++++|..+...+. .|..+....|+..|+..+.+
T Consensus 143 ~~g~~~~-----~----~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e----yR~~~v~adg~~~l~~~l~s 209 (442)
T KOG2759|consen 143 CFGNCKM-----E----LSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE----YRYAFVIADGVSLLIRILAS 209 (442)
T ss_pred Hhccccc-----c----chHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc----hhheeeecCcchhhHHHHhc
Confidence 7653211 0 00111 12223334444 566777788999999988864 58888899999999999943
Q ss_pred C--CHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcH------HHHHH
Q 008257 229 P--QNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDL------GLTRQ 300 (572)
Q Consensus 229 ~--~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~------~~~~~ 300 (572)
. +-.+|=..+.+++.|+-. +.+++.+... +.|+.|.++++.... +++-...++++.|+....+ .....
T Consensus 210 ~~~~~QlQYqsifciWlLtFn--~~~ae~~~~~-~li~~L~~Ivk~~~K-EKV~Rivlai~~Nll~k~~~~~~~k~~~~~ 285 (442)
T KOG2759|consen 210 TKCGFQLQYQSIFCIWLLTFN--PHAAEKLKRF-DLIQDLSDIVKESTK-EKVTRIVLAIFRNLLDKGPDRETKKDIASQ 285 (442)
T ss_pred cCcchhHHHHHHHHHHHhhcC--HHHHHHHhhc-cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence 3 246777888889988855 2344566544 789999999988763 5777778888999876542 33345
Q ss_pred HHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHH
Q 008257 301 MLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMV 380 (572)
Q Consensus 301 l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~ 380 (572)
++.+++.+.+-.+ ...+. .++.+.+. +-.+.. ...+. ++-|.+- + +=+.+
T Consensus 286 mv~~~v~k~l~~L-~~rky-------sDEDL~~d----i~~L~e------~L~~s----------vq~LsSF-D-eY~sE 335 (442)
T KOG2759|consen 286 MVLCKVLKTLQSL-EERKY-------SDEDLVDD----IEFLTE------KLKNS----------VQDLSSF-D-EYKSE 335 (442)
T ss_pred HHhcCchHHHHHH-HhcCC-------CcHHHHHH----HHHHHH------HHHHH----------HHhhccH-H-HHHHH
Confidence 6665555554444 33211 12222221 112211 00111 1112221 1 00000
Q ss_pred HHHHHHHhhhhccccCCCCCCCCCCCCccccc----cccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCC-
Q 008257 381 SATALENLSLESKNLTKLPELPPSGFCASIFP----CFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHT- 455 (572)
Q Consensus 381 Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~- 455 (572)
. .+....+.|++-...+|. +| .++.+. .+..|+++|+.+
T Consensus 336 ---l----------~sG~L~WSP~Hk~e~FW~eNa~rl------------------nennye-----llkiL~~lLe~s~ 379 (442)
T KOG2759|consen 336 ---L----------RSGRLEWSPVHKSEKFWRENADRL------------------NENNYE-----LLKILIKLLETSN 379 (442)
T ss_pred ---H----------HhCCcCCCccccccchHHHhHHHH------------------hhccHH-----HHHHHHHHHhcCC
Confidence 0 001111112221111111 22 134443 567899999765
Q ss_pred CHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257 456 NEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT 519 (572)
Q Consensus 456 ~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~ 519 (572)
+|.+...|+.=++.++.+.+ ++...+.+.||=..+.+++ +|+|++++-.|.-+++++..+
T Consensus 380 Dp~iL~VAc~DIge~Vr~yP---~gk~vv~k~ggKe~vM~Ll-nh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 380 DPIILCVACHDIGEYVRHYP---EGKAVVEKYGGKERVMNLL-NHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred CCceeehhhhhHHHHHHhCc---hHhHHHHHhchHHHHHHHh-cCCCchHHHHHHHHHHHHHhh
Confidence 48889999999999998755 7888999999999999999 699999999999999988743
No 45
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.75 E-value=7.9e-06 Score=84.22 Aligned_cols=313 Identities=12% Similarity=0.082 Sum_probs=177.9
Q ss_pred CCCHHHHHHHHHHHHhhccCcch-HHHHHHc-----CCcHHHHHHHccCCHHHHHHHHHHHHHhccC-cchhHHHHhhhH
Q 008257 6 SENLLTVEKAEKTLANLEKCENN-VRQMAEN-----GRLQPLLTQILEGPQETKLSLAAFLGDLALN-SDVKVLVARTVG 78 (572)
Q Consensus 6 s~~~~~~~~A~~~L~~L~~~~~n-~~~i~~~-----g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~-~~~k~~i~~~g~ 78 (572)
..++++.+-....+..|-..+.. ...+.+. ....|++.+|..++.-.+..+...|..+... ..+.......-.
T Consensus 65 ~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~ 144 (429)
T cd00256 65 IDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYY 144 (429)
T ss_pred cCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHH
Confidence 44556666666666666654333 4455554 4678899999888888888999999887652 221111111112
Q ss_pred -HHHHHhcccC-CHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCC
Q 008257 79 -SCLINIMKSG-NMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDF 156 (572)
Q Consensus 79 -~~Lv~lL~s~-~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~ 156 (572)
.-|...|++. +...+..|+.+|..|...+++|..+.+.+++++|+.+|+... ....++.++.-+++-|+.+....
T Consensus 145 ~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~---~~~Ql~Y~~ll~lWlLSF~~~~~ 221 (429)
T cd00256 145 FNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNAT---LGFQLQYQSIFCIWLLTFNPHAA 221 (429)
T ss_pred HHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhcc---ccHHHHHHHHHHHHHHhccHHHH
Confidence 4555666654 467788899999999999999999999999999999997531 13466777777777775432200
Q ss_pred CccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHH
Q 008257 157 DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLA 236 (572)
Q Consensus 157 ~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 236 (572)
..+...+.|+.|+++++... .+++.+-
T Consensus 222 ---------~~~~~~~~i~~l~~i~k~s~--------------------------------------------KEKvvRv 248 (429)
T cd00256 222 ---------EVLKRLSLIQDLSDILKEST--------------------------------------------KEKVIRI 248 (429)
T ss_pred ---------HhhccccHHHHHHHHHHhhh--------------------------------------------hHHHHHH
Confidence 11222344444444444221 1334444
Q ss_pred HHHHHHHcCCCC-----ChhHHHHHhcccCChhhHHhhhccCC--C-----------------------ChH-HHHHHHH
Q 008257 237 SIELIQNLSPHM-----GHELADALRGAVGQLGSLIRVISENV--G-----------------------ISK-EQAAAVG 285 (572)
Q Consensus 237 a~~~L~~Ls~~~-----~~~~~~~i~~~~g~l~~Lv~lL~~~~--~-----------------------~~~-~~~~A~~ 285 (572)
++.+|+||.... .......+... +++.++..|.... + ..+ ..+.-.+
T Consensus 249 ~l~~l~Nll~~~~~~~~~~~~~~~mv~~--~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg 326 (429)
T cd00256 249 VLAIFRNLISKRVDREVKKTAALQMVQC--KVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSG 326 (429)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHc--ChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcC
Confidence 444444444321 01111122221 2333333333221 0 000 0110111
Q ss_pred HHhcCCCC-c----HHHHHHHHhCC--ChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHH
Q 008257 286 LLAELPER-D----LGLTRQMLDEG--AFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCE 358 (572)
Q Consensus 286 ~L~~L~~~-~----~~~~~~l~~~g--~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~ 358 (572)
.|.-=+.| + .++...|-+.+ .+..|+.+|..+. ++.++.-|..=++.++.. .|.-+..+.+
T Consensus 327 ~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~---------d~~~laVAc~Dige~vr~---~P~gr~i~~~ 394 (429)
T cd00256 327 RLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSV---------DPIILAVACHDIGEYVRH---YPRGKDVVEQ 394 (429)
T ss_pred CccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCC---------CcceeehhhhhHHHHHHH---CccHHHHHHH
Confidence 11111111 1 12223343332 3577888885321 222233444445566653 6888888999
Q ss_pred cCchHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 008257 359 HNLAALFIELLQSNGLDKVQMVSATALENLS 389 (572)
Q Consensus 359 ~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls 389 (572)
.|+=..+++|+.++ +++||.+|..|+.-+.
T Consensus 395 lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm 424 (429)
T cd00256 395 LGGKQRVMRLLNHE-DPNVRYEALLAVQKLM 424 (429)
T ss_pred cCcHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999987664
No 46
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=2.4e-06 Score=90.71 Aligned_cols=347 Identities=18% Similarity=0.186 Sum_probs=235.7
Q ss_pred CChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhc--CChhHHHHHHH
Q 008257 117 GILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN--TGPTIECKLLQ 194 (572)
Q Consensus 117 G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~--~~~~~q~~a~~ 194 (572)
--|+.|++-+.+.+ -.+=|+.|+..|..+++- ++ ..+..-++++|+..|.. .++++-..++.
T Consensus 22 ETI~kLcDRvessT----L~eDRR~A~rgLKa~srk---YR---------~~Vga~Gmk~li~vL~~D~~D~E~ik~~Ld 85 (970)
T KOG0946|consen 22 ETIEKLCDRVESST----LLEDRRDAVRGLKAFSRK---YR---------EEVGAQGMKPLIQVLQRDYMDPEIIKYALD 85 (970)
T ss_pred hHHHHHHHHHhhcc----chhhHHHHHHHHHHHHHH---HH---------HHHHHcccHHHHHHHhhccCCHHHHHHHHH
Confidence 35777777665532 244588888888888752 11 22334568999999974 68899999999
Q ss_pred HHHHccCCCC------cc-------HHHHHH-HHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhccc
Q 008257 195 VLVGLTSSPT------TV-------LSVVSA-IKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAV 260 (572)
Q Consensus 195 aL~~l~~~~~------~~-------~~~~~~-i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~ 260 (572)
+++.+....+ +. ..+... |...+-|..|+.+++..|-.||..++.+|.++-++.+.++++.+...+
T Consensus 86 Tl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P 165 (970)
T KOG0946|consen 86 TLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSP 165 (970)
T ss_pred HHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCc
Confidence 9999877542 10 122233 334678999999999999999999999999999988899988888877
Q ss_pred CChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHH
Q 008257 261 GQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLA 340 (572)
Q Consensus 261 g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~ 340 (572)
-+|..||.+|..... .+|..|+-.|..++.+++.+++.++=++++..|.+++.... ..+ .--+.+.++..|.
T Consensus 166 ~gIS~lmdlL~DsrE--~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEG--g~d----GgIVveDCL~ll~ 237 (970)
T KOG0946|consen 166 MGISKLMDLLRDSRE--PIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEG--GLD----GGIVVEDCLILLN 237 (970)
T ss_pred hhHHHHHHHHhhhhh--hhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcC--CCC----CcchHHHHHHHHH
Confidence 899999999988775 79999999999999999999888888999999999998632 111 1235788998888
Q ss_pred HHhccCCCChHHHHHHHHcCchHHHHHHhccC--CcH------HHHH-HHHHHHHHhhhhccccCCCCCCCCCCCCcccc
Q 008257 341 RVTFVLSDEPDAIALCCEHNLAALFIELLQSN--GLD------KVQM-VSATALENLSLESKNLTKLPELPPSGFCASIF 411 (572)
Q Consensus 341 ~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~------~vk~-~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~ 411 (572)
++-. .|..++..+++.+.||.|.++|... ++. .-|. +.-.+|.-+.
T Consensus 238 NLLK---~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr---------------------- 292 (970)
T KOG0946|consen 238 NLLK---NNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVR---------------------- 292 (970)
T ss_pred HHHh---hCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHH----------------------
Confidence 8876 4788899999999999999998753 121 1111 1112221111
Q ss_pred ccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCC--CHhHHHHHHHHHHHhhhcCccchhhHHHHHhc--
Q 008257 412 PCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHT--NEKVVEASLAALSTVIDDGVDIEQGVMVLCEA-- 487 (572)
Q Consensus 412 ~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~-- 487 (572)
.+.++.. .--.. ..++..+...+.+..|..+|-++ ..+|...+.-++.+.+....+ ++..+.+.
T Consensus 293 -~lVsP~N--t~~~~------~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~---nQ~~F~~v~~ 360 (970)
T KOG0946|consen 293 -SLVSPGN--TSSIT------HQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNAR---NQDEFADVTA 360 (970)
T ss_pred -HhcCCCC--cHHHH------HHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchH---HHHHHhhccC
Confidence 0000000 00000 12334577889999999999776 458888888888888865442 22233222
Q ss_pred --CC--hHHHH----HHHhhcCCHHHHHHHHHHHHHHH-cchhhhh
Q 008257 488 --QG--IKPIL----DVLLEKRTENLQRRAVWVVERIL-RTDDIAY 524 (572)
Q Consensus 488 --g~--i~~L~----~lL~~~~~~~~~~~a~~~l~~l~-~~~~~~~ 524 (572)
+- .+.++ .+..+......|-....++..++ .+++...
T Consensus 361 p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~ 406 (970)
T KOG0946|consen 361 PSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQR 406 (970)
T ss_pred CCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHH
Confidence 11 22222 33333445666666666776665 4444443
No 47
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.9e-06 Score=92.11 Aligned_cols=263 Identities=14% Similarity=0.103 Sum_probs=189.7
Q ss_pred HHHHHhcccC-CHHHHHHHHHHHHHhhc--CCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257 79 SCLINIMKSG-NMQAREAALKALNQISS--CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD 155 (572)
Q Consensus 79 ~~Lv~lL~s~-~~~~~~~A~~aL~~Ls~--~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~ 155 (572)
..|++-|... ++-.|..|+.=|+.+-. +++.-..+--.-.||.|+.+|+..+ ..++.-.|+.+|.+|+..-+.
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~----n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEH----NFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccc----cHHHHHHHHHHHHHHHhhccc
Confidence 4566656654 67777777776666553 3333332224557999999998643 488999999999999875432
Q ss_pred CCccccCCCccccchhhhHHHHHHHH-hcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHH
Q 008257 156 FDSITVGPDNQTLVSEDIVHNLLHLI-SNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLR 234 (572)
Q Consensus 156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL-~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~ 234 (572)
.. ..++.+++||.|+.-| ..+.-++-++++.||-.++.... +++.++|++...+.+|+.-...+|
T Consensus 246 S~--------a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~------~AiL~AG~l~a~LsylDFFSi~aQ 311 (1051)
T KOG0168|consen 246 SS--------AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP------KAILQAGALSAVLSYLDFFSIHAQ 311 (1051)
T ss_pred hh--------heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc------HHHHhcccHHHHHHHHHHHHHHHH
Confidence 22 2466788999998544 56888999999999999988643 577899999999999998888899
Q ss_pred HHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC--ChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHH
Q 008257 235 LASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG--ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFS 312 (572)
Q Consensus 235 ~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~--~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~ 312 (572)
+.|+.+..|+|.....+-...+.+ ++|.|-.+|++.+. ++..-.....+..+... +++.-+.+...|.|....+
T Consensus 312 R~AlaiaaN~Cksi~sd~f~~v~e---alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h-~~~kLdql~s~dLi~~~~q 387 (1051)
T KOG0168|consen 312 RVALAIAANCCKSIRSDEFHFVME---ALPLLTPLLSYQDKKPIESVCICLTRIADGFQH-GPDKLDQLCSHDLITNIQQ 387 (1051)
T ss_pred HHHHHHHHHHHhcCCCccchHHHH---HHHHHHHHHhhccchhHHHHHHHHHHHHHhccc-ChHHHHHHhchhHHHHHHH
Confidence 999999999996543333345665 69999999998875 11223334444555544 5555588999999999999
Q ss_pred HHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccC
Q 008257 313 RVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN 372 (572)
Q Consensus 313 lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~ 372 (572)
+|.-.++. -...+.-..+..|..+++ +.|.....+.+.|+...|..+|..-
T Consensus 388 Llsvt~t~------Ls~~~~~~vIrmls~msS---~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 388 LLSVTPTI------LSNGTYTGVIRMLSLMSS---GSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred HHhcCccc------ccccchhHHHHHHHHHcc---CChHHHHHHHHhhHHHHHHHHHhcc
Confidence 99753211 122234456667777775 3688888999999999998888753
No 48
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=2.7e-05 Score=83.26 Aligned_cols=378 Identities=12% Similarity=0.147 Sum_probs=207.3
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS 158 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~ 158 (572)
|-..++|++.++.+++.|+-|+..+-.-.++-..+ .+++...+|.+.+ ..+-..+...+..++..+.+.
T Consensus 145 peVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~----f~~~~~~lL~ek~-----hGVL~~~l~l~~e~c~~~~~~-- 213 (866)
T KOG1062|consen 145 PEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH----FVIAFRKLLCEKH-----HGVLIAGLHLITELCKISPDA-- 213 (866)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH----hhHHHHHHHhhcC-----CceeeeHHHHHHHHHhcCHHH--
Confidence 66777888888888777777766665443332222 4566666666543 444555556666666543211
Q ss_pred cccCCCccccchhhhHHHHHHHHh---------------cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHH
Q 008257 159 ITVGPDNQTLVSEDIVHNLLHLIS---------------NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLV 223 (572)
Q Consensus 159 ~~~~~~~~~l~~~~~i~~Lv~lL~---------------~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv 223 (572)
.-.-...++.|+..|+ -++|.+|.+.++.|.-+.++... ..+.|.+ .|-
T Consensus 214 --------l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~d---aSd~M~D-----iLa 277 (866)
T KOG1062|consen 214 --------LSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDAD---ASDLMND-----ILA 277 (866)
T ss_pred --------HHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCcc---HHHHHHH-----HHH
Confidence 0112336777777775 15778888888888888776432 2232221 122
Q ss_pred HHhcCCC------HHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHH
Q 008257 224 QFVEAPQ------NDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGL 297 (572)
Q Consensus 224 ~lL~~~~------~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~ 297 (572)
+.....+ ..+-=.++.++..+-.. .. ++. -++..|-++|.+++. .++..|+..|......++..
T Consensus 278 qvatntdsskN~GnAILYE~V~TI~~I~~~--~~----Lrv--lainiLgkFL~n~d~--NirYvaLn~L~r~V~~d~~a 347 (866)
T KOG1062|consen 278 QVATNTDSSKNAGNAILYECVRTIMDIRSN--SG----LRV--LAINILGKFLLNRDN--NIRYVALNMLLRVVQQDPTA 347 (866)
T ss_pred HHHhcccccccchhHHHHHHHHHHHhccCC--ch----HHH--HHHHHHHHHhcCCcc--ceeeeehhhHHhhhcCCcHH
Confidence 2222111 11222222333322211 12 222 256677777777775 67777777777766656554
Q ss_pred HHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHH
Q 008257 298 TRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKV 377 (572)
Q Consensus 298 ~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v 377 (572)
.+.-. ..++.+|++ ++..++..|+..+..++ |..+.+.+ +.-|++.|.+. +++.
T Consensus 348 vqrHr-----~tIleCL~D----------pD~SIkrralELs~~lv-----n~~Nv~~m-----v~eLl~fL~~~-d~~~ 401 (866)
T KOG1062|consen 348 VQRHR-----STILECLKD----------PDVSIKRRALELSYALV-----NESNVRVM-----VKELLEFLESS-DEDF 401 (866)
T ss_pred HHHHH-----HHHHHHhcC----------CcHHHHHHHHHHHHHHh-----ccccHHHH-----HHHHHHHHHhc-cHHH
Confidence 43222 456778876 36678888999888888 45555544 34578889988 8999
Q ss_pred HHHHHHHHHHhhhhccccCCCCCCCCCC-C-CccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCC
Q 008257 378 QMVSATALENLSLESKNLTKLPELPPSG-F-CASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHT 455 (572)
Q Consensus 378 k~~Aa~aL~~ls~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~ 455 (572)
|...+..+..++..=. +.+ | ...++..|... .. .+....+.-|++++.+.
T Consensus 402 k~~~as~I~~laEkfa---------P~k~W~idtml~Vl~~a-----------------G~--~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 402 KADIASKIAELAEKFA---------PDKRWHIDTMLKVLKTA-----------------GD--FVNDDVVNNLLRLIANA 453 (866)
T ss_pred HHHHHHHHHHHHHhcC---------CcchhHHHHHHHHHHhc-----------------cc--ccchhhHHHHHHHHhcC
Confidence 9999988888765211 100 0 01111122110 01 34556777777777766
Q ss_pred CHhHHHHHHHHHHHhhhcC-------cc-chhhHHHHHhcC-------------------ChHHHHHHHhhcC-CHHHHH
Q 008257 456 NEKVVEASLAALSTVIDDG-------VD-IEQGVMVLCEAQ-------------------GIKPILDVLLEKR-TENLQR 507 (572)
Q Consensus 456 ~~~v~~~A~~aL~~l~~~~-------~~-~~~~~~~i~~~g-------------------~i~~L~~lL~~~~-~~~~~~ 507 (572)
.++..+.+...|+.-.... ++ .+-..|+|.|.| .+..|..++..+. +...+.
T Consensus 454 ~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~ 533 (866)
T KOG1062|consen 454 FQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKG 533 (866)
T ss_pred CcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHH
Confidence 4444444443333222110 00 122234455544 4566777774333 577889
Q ss_pred HHHHHHHHHHcc-hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHH
Q 008257 508 RAVWVVERILRT-DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAER 553 (572)
Q Consensus 508 ~a~~~l~~l~~~-~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~ 553 (572)
+|+.++.++... ... ...+.+.+.....+-+.+.|++|-.
T Consensus 534 yal~Al~KLSsr~~s~------~~ri~~lI~~~~~s~~~elQQRa~E 574 (866)
T KOG1062|consen 534 YALTALLKLSSRFHSS------SERIKQLISSYKSSLDTELQQRAVE 574 (866)
T ss_pred HHHHHHHHHHhhcccc------HHHHHHHHHHhcccccHHHHHHHHH
Confidence 999999888732 111 1123223344445666777777754
No 49
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.62 E-value=7.7e-07 Score=89.89 Aligned_cols=217 Identities=16% Similarity=0.119 Sum_probs=149.6
Q ss_pred CCHHHHHHHHHHHHhhccC-cchHHHHHH------cCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-
Q 008257 7 ENLLTVEKAEKTLANLEKC-ENNVRQMAE------NGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG- 78 (572)
Q Consensus 7 ~~~~~~~~A~~~L~~L~~~-~~n~~~i~~------~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~- 78 (572)
.++.+.+-....+..|-.. +.....+.+ ...+.|+++++..++.-.+..|+..|..+......+..-...+.
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l 148 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEAL 148 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHH
Confidence 5677778788888887764 444555554 23689999999999999999999999998764433322211344
Q ss_pred HHHHHhccc----CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHH-----hccCCCCCCcchHHHHHHHHHHH
Q 008257 79 SCLINIMKS----GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDL-----FTVGSNHLPMRLKEVSATILANV 149 (572)
Q Consensus 79 ~~Lv~lL~s----~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL-----~s~~~~~~~~~~~~~aa~~L~nl 149 (572)
+.++++|++ ++.+.+..|+.+|.+|...+++|..+.+.|++++|+++| .+. .....++.++.-+++-|
T Consensus 149 ~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~---~~~~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 149 PKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSN---SSGIQLQYQALLCLWLL 225 (312)
T ss_dssp HHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCC---CCchhHHHHHHHHHHHH
Confidence 888888875 445678999999999999999999999999999999999 222 23478999999999999
Q ss_pred HhcCCCCCccccCCCccccchhhhHHHHHHHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcC
Q 008257 150 VNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA 228 (572)
Q Consensus 150 a~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~ 228 (572)
+.+... ...+...+.|+.|+++++. ....+-.-++.+|.|+...... .+...|..+|+++.+-.|...
T Consensus 226 SF~~~~---------~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~--~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 226 SFEPEI---------AEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPK--SNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp TTSHHH---------HHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST--THHHHHHHH-HHHHHHHHHSS
T ss_pred hcCHHH---------HHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHH--HHHHHHHHccHHHHHHHHhcC
Confidence 764321 1245667799999999985 4556777888999999987653 367778877777766555543
Q ss_pred --CCHHHHHHH
Q 008257 229 --PQNDLRLAS 237 (572)
Q Consensus 229 --~~~~v~~~a 237 (572)
.|+++.+.-
T Consensus 295 k~~Dedl~edl 305 (312)
T PF03224_consen 295 KWSDEDLTEDL 305 (312)
T ss_dssp --SSHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 356766653
No 50
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.51 E-value=3.5e-06 Score=85.11 Aligned_cols=215 Identities=17% Similarity=0.204 Sum_probs=150.0
Q ss_pred HHHHHhccc--CCHHHHHHHHHHHHHhhcCCCcHHHH-HH------cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 008257 79 SCLINIMKS--GNMQAREAALKALNQISSCEPSAKVL-IH------AGILPPLVKDLFTVGSNHLPMRLKEVSATILANV 149 (572)
Q Consensus 79 ~~Lv~lL~s--~~~~~~~~A~~aL~~Ls~~~~~~~~i-v~------~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nl 149 (572)
..++++|+. .+.+.....+..+..|..+++.+..+ .+ .....++++++.++ +.-++..|+.+|+.+
T Consensus 58 ~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~-----D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 58 SLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN-----DSFIQLKAAFILTSL 132 (312)
T ss_dssp ----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S-----SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC-----CHHHHHHHHHHHHHH
Confidence 667777764 57888999999999999877665443 33 23688899988764 378899999999999
Q ss_pred HhcCCCCCccccCCCccccchhhhHHHHHHHHhc----CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHH
Q 008257 150 VNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN----TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQF 225 (572)
Q Consensus 150 a~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~----~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~l 225 (572)
...+..... -...+.++.+++.|++ ++.+++.-++++|..+...+ ..|..+.+.++++.|+.+
T Consensus 133 l~~~~~~~~---------~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~----~~R~~f~~~~~v~~l~~i 199 (312)
T PF03224_consen 133 LSQGPKRSE---------KLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK----EYRQVFWKSNGVSPLFDI 199 (312)
T ss_dssp HTSTTT--H---------HHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH----HHHHHHHTHHHHHHHHHH
T ss_pred HHcCCcccc---------chHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc----hhHHHHHhcCcHHHHHHH
Confidence 876543211 1114688899988875 45567889999999998775 679999999999999999
Q ss_pred h-----cCC--CHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHH-H
Q 008257 226 V-----EAP--QNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLG-L 297 (572)
Q Consensus 226 L-----~~~--~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~-~ 297 (572)
+ .++ +..++=+++-++|.|+-. .++++.+... +.++.|+++++.... +++-..+++++.||...+.. +
T Consensus 200 L~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~--~~~~~~~~~~-~~i~~L~~i~~~~~K-EKvvRv~la~l~Nl~~~~~~~~ 275 (312)
T PF03224_consen 200 LRKQATNSNSSGIQLQYQALLCLWLLSFE--PEIAEELNKK-YLIPLLADILKDSIK-EKVVRVSLAILRNLLSKAPKSN 275 (312)
T ss_dssp HH---------HHHHHHHHHHHHHHHTTS--HHHHHHHHTT-SHHHHHHHHHHH--S-HHHHHHHHHHHHHTTSSSSTTH
T ss_pred HHhhcccCCCCchhHHHHHHHHHHHHhcC--HHHHHHHhcc-chHHHHHHHHHhccc-chHHHHHHHHHHHHHhccHHHH
Confidence 9 222 246777899999999966 4566677776 799999999987774 58888899999999886553 6
Q ss_pred HHHHHhCCChHHHHHHHh
Q 008257 298 TRQMLDEGAFGLIFSRVK 315 (572)
Q Consensus 298 ~~~l~~~g~l~~Lv~lL~ 315 (572)
...++..|+++.+-.+..
T Consensus 276 ~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 276 IELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHccHHHHHHHHhc
Confidence 677888777666666543
No 51
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.45 E-value=7.1e-06 Score=82.28 Aligned_cols=274 Identities=14% Similarity=0.174 Sum_probs=173.8
Q ss_pred HHHHHHhcCChHHHHHHhcCCCH--HHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHH
Q 008257 209 VVSAIKSSGATISLVQFVEAPQN--DLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGL 286 (572)
Q Consensus 209 ~~~~i~~~g~i~~Lv~lL~~~~~--~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~ 286 (572)
....++..||+..|+.++.+++. .+|..|.++|..+...++.+ .+... | +..++.+-..... .+++...+++
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d---~va~~-~-~~~Il~lAK~~e~-~e~aR~~~~i 245 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRD---RVARI-G-LGVILNLAKEREP-VELARSVAGI 245 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhh---HHhhc-c-chhhhhhhhhcCc-HHHHHHHHHH
Confidence 34667789999999999999985 46999999998887654444 33332 2 5555555544443 3788888999
Q ss_pred HhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHH
Q 008257 287 LAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFI 366 (572)
Q Consensus 287 L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv 366 (572)
|.++-+++.+..+.+++.|++..++.-.+. +.+.+...++-+|.+++-+ .....++.+++..+-.-|.
T Consensus 246 l~~mFKHSeet~~~Lvaa~~lD~vl~~~rR----------t~P~lLRH~ALAL~N~~L~--~~~a~qrrmveKr~~EWLF 313 (832)
T KOG3678|consen 246 LEHMFKHSEETCQRLVAAGGLDAVLYWCRR----------TDPALLRHCALALGNCALH--GGQAVQRRMVEKRAAEWLF 313 (832)
T ss_pred HHHHhhhhHHHHHHHHhhcccchheeeccc----------CCHHHHHHHHHHhhhhhhh--chhHHHHHHHHhhhhhhhh
Confidence 999999999999999999999988765543 4677888999999998855 5677888888888766666
Q ss_pred HHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccc-cccCccCccchhhhhhccch
Q 008257 367 ELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCR-LHRGLCSLKETFCLLEGHAV 445 (572)
Q Consensus 367 ~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~-~~~~~~~~~~~~~l~~~g~i 445 (572)
-|-.+. ++..+.+|+.|.+.++.+.+.............+.-++..+ ++. ...+ .|. ...=.--.-+
T Consensus 314 ~LA~sk-Del~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~--DP~--~FARD~hd-------~aQG~~~d~L 381 (832)
T KOG3678|consen 314 PLAFSK-DELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASL--DPG--RFARDAHD-------YAQGRGPDDL 381 (832)
T ss_pred hhhcch-HHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhcc--Ccc--hhhhhhhh-------hhccCChHHH
Confidence 555666 88899999999999887654322110000000000000000 000 0000 000 0000012356
Q ss_pred HHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHH
Q 008257 446 EKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVE 514 (572)
Q Consensus 446 ~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~ 514 (572)
+.||.+|+++.-+.+..++.-|+-=+.-. ..+.-...+.+-|+|..|-++. .++|+..-..|-.+|.
T Consensus 382 qRLvPlLdS~R~EAq~i~AF~l~~EAaIK-s~Q~K~kVFseIGAIQaLKeva-SS~d~vaakfAseALt 448 (832)
T KOG3678|consen 382 QRLVPLLDSNRLEAQCIGAFYLCAEAAIK-SLQGKTKVFSEIGAIQALKEVA-SSPDEVAAKFASEALT 448 (832)
T ss_pred HHhhhhhhcchhhhhhhHHHHHHHHHHHH-HhccchhHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHH
Confidence 78999999776665554443333222111 1223356778889999999988 5777766555655554
No 52
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=1.5e-05 Score=83.36 Aligned_cols=352 Identities=15% Similarity=0.124 Sum_probs=192.2
Q ss_pred cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHH
Q 008257 116 AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQV 195 (572)
Q Consensus 116 ~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~a 195 (572)
..++|.|..+|.+++ ....+-|..+|..++..+... .|.....=--+-.+|.+++..++++|.++..|+.+
T Consensus 127 pelLp~L~~~L~s~d-----~n~~EgA~~AL~KIcEDsa~~----lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~c 197 (885)
T KOG2023|consen 127 PELLPQLCELLDSPD-----YNTCEGAFGALQKICEDSAQF----LDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGC 197 (885)
T ss_pred hhHHHHHHHHhcCCc-----ccccchhHHHHHHHHhhhHHH----HhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhh
Confidence 457899999998753 567899999999998754321 11110000114579999999999999999999987
Q ss_pred HHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcc-cCChhhHHhhhccCC
Q 008257 196 LVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGA-VGQLGSLIRVISENV 274 (572)
Q Consensus 196 L~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~-~g~l~~Lv~lL~~~~ 274 (572)
+-.+--.... ..- ..--.-+..|..+-...+++||.+.+.+|..|-.-.... +..+ .+.+.-.+..-+..+
T Consensus 198 vNq~i~~~~q--al~--~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk----l~phl~~IveyML~~tqd~d 269 (885)
T KOG2023|consen 198 VNQFIIIQTQ--ALY--VHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK----LVPHLDNIVEYMLQRTQDVD 269 (885)
T ss_pred hhheeecCcH--HHH--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh----cccchHHHHHHHHHHccCcc
Confidence 7655443221 011 111234556666767788999999999999887432222 2221 023333333333334
Q ss_pred CChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhh-ccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHH
Q 008257 275 GISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSI-QLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAI 353 (572)
Q Consensus 275 ~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~-~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~ 353 (572)
+ .+...|.-....++.. +-.+..+. -.++.|+-.|-+. ...+ .+..+++ . .+.+-.
T Consensus 270 E--~VALEACEFwla~aeq-pi~~~~L~--p~l~kliPvLl~~M~Ysd-----~D~~LL~---------~----~eeD~~ 326 (885)
T KOG2023|consen 270 E--NVALEACEFWLALAEQ-PICKEVLQ--PYLDKLIPVLLSGMVYSD-----DDIILLK---------N----NEEDES 326 (885)
T ss_pred h--hHHHHHHHHHHHHhcC-cCcHHHHH--HHHHHHHHHHHccCcccc-----ccHHHhc---------C----cccccc
Confidence 3 5666666655555552 22222222 1234444333221 1110 0111111 0 011000
Q ss_pred HHHHHcCchHHHHHHhccC---------------------CcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccc
Q 008257 354 ALCCEHNLAALFIELLQSN---------------------GLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFP 412 (572)
Q Consensus 354 ~~i~~~g~i~~Lv~lL~~~---------------------~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~ 412 (572)
..=+++++=|.+.+-=..+ ++-.+|+..|.+|--|+.--+.
T Consensus 327 vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~------------------ 388 (885)
T KOG2023|consen 327 VPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD------------------ 388 (885)
T ss_pred CCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHH------------------
Confidence 0012233334443221111 0123444444444333310000
Q ss_pred cccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhc--CCh
Q 008257 413 CFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEA--QGI 490 (572)
Q Consensus 413 ~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~--g~i 490 (572)
.+. .-..|.|-+.|.+.+=.+++++.-||+-++...- .-++.+ .-|
T Consensus 389 -------------------------elL-~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM------~g~~p~LpeLi 436 (885)
T KOG2023|consen 389 -------------------------ELL-PILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM------QGFVPHLPELI 436 (885)
T ss_pred -------------------------HHH-HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh------hhcccchHHHH
Confidence 001 1133445555666667899999999998884211 111111 135
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHcc--hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257 491 KPILDVLLEKRTENLQRRAVWVVERILRT--DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK 560 (572)
Q Consensus 491 ~~L~~lL~~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~ 560 (572)
|.|+++| .+..+-+|..+.|.|.++..+ .+.++++-. .+-..|+..+-+++.+||+.|+.|.+-|-.
T Consensus 437 p~l~~~L-~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE 505 (885)
T KOG2023|consen 437 PFLLSLL-DDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEE 505 (885)
T ss_pred HHHHHHh-ccCccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 7889999 588899999999999999876 333434333 122355566668999999999999987754
No 53
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00021 Score=76.25 Aligned_cols=257 Identities=12% Similarity=0.156 Sum_probs=149.0
Q ss_pred CHHHHHHHHHHHHHcC---C-CCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCC
Q 008257 230 QNDLRLASIELIQNLS---P-HMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEG 305 (572)
Q Consensus 230 ~~~v~~~a~~~L~~Ls---~-~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g 305 (572)
+..+|-.|..+|.+-- + ..+.+. =+. -.+....+.-.+++. +++.+|..+|..+..-..+..+.-.+..
T Consensus 187 s~~vRLaa~~aL~nsLef~~~nF~~E~---ern--~iMqvvcEatq~~d~--~i~~aa~~ClvkIm~LyY~~m~~yM~~a 259 (859)
T KOG1241|consen 187 SAAVRLAALNALYNSLEFTKANFNNEM---ERN--YIMQVVCEATQSPDE--EIQVAAFQCLVKIMSLYYEFMEPYMEQA 259 (859)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhccHh---hhc--eeeeeeeecccCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888887632 1 111111 011 234455555555664 8899999988887654444444334444
Q ss_pred ChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHH-----HHH---------------HHcCchHHH
Q 008257 306 AFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAI-----ALC---------------CEHNLAALF 365 (572)
Q Consensus 306 ~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~-----~~i---------------~~~g~i~~L 365 (572)
.++..+.-+++ .+.++.-.++.-.+.++ +.++- ... .-.+++|.|
T Consensus 260 lfaitl~amks----------~~deValQaiEFWstic-----eEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~L 324 (859)
T KOG1241|consen 260 LFAITLAAMKS----------DNDEVALQAIEFWSTIC-----EEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVL 324 (859)
T ss_pred HHHHHHHHHcC----------CcHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHH
Confidence 44444444443 23444444555555554 12211 001 113677888
Q ss_pred HHHhccC------CcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhh
Q 008257 366 IELLQSN------GLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCL 439 (572)
Q Consensus 366 v~lL~~~------~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l 439 (572)
+++|... .+-..-..|..+|.-++...++. |
T Consensus 325 l~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~-------------------------------------------I 361 (859)
T KOG1241|consen 325 LELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-------------------------------------------I 361 (859)
T ss_pred HHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc-------------------------------------------c
Confidence 8888762 12234455556666555432211 1
Q ss_pred hhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257 440 LEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT 519 (572)
Q Consensus 440 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~ 519 (572)
+. -++|.+-+-++++|-+-+++|+.|++.+...++ +.....+ ..+++|.++.++. .++--+++.++|.|.+++.+
T Consensus 362 v~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~--~~~Lt~i-V~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 362 VP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPE--PDKLTPI-VIQALPSIINLMS-DPSLWVKDTAAWTLGRIADF 436 (859)
T ss_pred hh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCc--hhhhhHH-HhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhh
Confidence 22 133333447788899999999999999985443 1222333 4579999999994 77788899999999999966
Q ss_pred -hhhhhhhcCCCCchHHHHHHhh---cCCchhHHHHHHHHHhhcc
Q 008257 520 -DDIAYEVSGDPNVSTALVDAFQ---HADYRTRQIAERALKHIDK 560 (572)
Q Consensus 520 -~~~~~~~~~~~~~~~~Lv~ll~---~~~~~~~~~Aa~aL~~L~~ 560 (572)
.+.. ......+ +++..+- +..|++-..++||+-.|..
T Consensus 437 l~e~~---~n~~~l~-~~l~~l~~gL~DePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 437 LPEAI---INQELLQ-SKLSALLEGLNDEPRVASNVCWAFISLAE 477 (859)
T ss_pred chhhc---ccHhhhh-HHHHHHHHHhhhCchHHHHHHHHHHHHHH
Confidence 3222 2211222 3333332 3568999999999999983
No 54
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.41 E-value=4.5e-05 Score=79.04 Aligned_cols=242 Identities=13% Similarity=0.056 Sum_probs=162.5
Q ss_pred CcHHHHHHHc-cCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 008257 37 RLQPLLTQIL-EGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIH 115 (572)
Q Consensus 37 ~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~ 115 (572)
+++.|+..|. ....++...++.+|. ..++. .++..|++.|.+.++.++..++.+|..+- .
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~-------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~----------~ 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL--AQEDA-------LDLRSVLAVLQAGPEGLCAGIQAALGWLG----------G 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh--ccCCh-------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC----------c
Confidence 4677777884 455666555444443 11111 12488899999888889999999887532 3
Q ss_pred cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHH
Q 008257 116 AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQV 195 (572)
Q Consensus 116 ~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~a 195 (572)
.+..+.|+.+|++.+ +.++..+..+++..- ....+.+..+|+++++.++..++++
T Consensus 116 ~~a~~~L~~~L~~~~-----p~vR~aal~al~~r~--------------------~~~~~~L~~~L~d~d~~Vra~A~ra 170 (410)
T TIGR02270 116 RQAEPWLEPLLAASE-----PPGRAIGLAALGAHR--------------------HDPGPALEAALTHEDALVRAAALRA 170 (410)
T ss_pred hHHHHHHHHHhcCCC-----hHHHHHHHHHHHhhc--------------------cChHHHHHHHhcCCCHHHHHHHHHH
Confidence 456788899997542 677777766666521 1236788888999999999999998
Q ss_pred HHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC
Q 008257 196 LVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG 275 (572)
Q Consensus 196 L~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~ 275 (572)
|..+.. ..+++.|...+.+.++.||..|+..+..+... .++..+..+...+..
T Consensus 171 LG~l~~--------------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~-------------~A~~~l~~~~~~~g~ 223 (410)
T TIGR02270 171 LGELPR--------------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSR-------------LAWGVCRRFQVLEGG 223 (410)
T ss_pred HHhhcc--------------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCH-------------hHHHHHHHHHhccCc
Confidence 876643 34677788888999999999999988666321 234555554444443
Q ss_pred ChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHH
Q 008257 276 ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIAL 355 (572)
Q Consensus 276 ~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~ 355 (572)
.....+..++... +++ .+++.|..++++. .+++.++.+|..+. ++
T Consensus 224 --~~~~~l~~~lal~--~~~---------~a~~~L~~ll~d~------------~vr~~a~~AlG~lg-----~p----- 268 (410)
T TIGR02270 224 --PHRQRLLVLLAVA--GGP---------DAQAWLRELLQAA------------ATRREALRAVGLVG-----DV----- 268 (410)
T ss_pred --cHHHHHHHHHHhC--Cch---------hHHHHHHHHhcCh------------hhHHHHHHHHHHcC-----Cc-----
Confidence 3333333333333 122 4567788888752 25778888888775 44
Q ss_pred HHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 008257 356 CCEHNLAALFIELLQSNGLDKVQMVSATALENLSLE 391 (572)
Q Consensus 356 i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~ 391 (572)
..++.|++.+... . +++.|..++..++.-
T Consensus 269 ----~av~~L~~~l~d~-~--~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 269 ----EAAPWCLEAMREP-P--WARLAGEAFSLITGM 297 (410)
T ss_pred ----chHHHHHHHhcCc-H--HHHHHHHHHHHhhCC
Confidence 4679999998876 3 999999999988763
No 55
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.33 E-value=1.1e-06 Score=59.51 Aligned_cols=40 Identities=30% Similarity=0.272 Sum_probs=37.8
Q ss_pred ChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 008257 349 EPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLS 389 (572)
Q Consensus 349 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls 389 (572)
|+++++.+++.|++|+|+++|+++ ++.+++.|+|||+|++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHh
Confidence 578899999999999999999998 9999999999999987
No 56
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.31 E-value=0.00018 Score=74.70 Aligned_cols=152 Identities=10% Similarity=-0.021 Sum_probs=99.6
Q ss_pred hhhHHHHHHHHh-cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 008257 171 EDIVHNLLHLIS-NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMG 249 (572)
Q Consensus 171 ~~~i~~Lv~lL~-~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~ 249 (572)
+..++.|+..|. .+++++...++.+|... .. ..++..|+..|.+.++.++..++.+|..+-..
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~------------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~-- 116 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ--ED------------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGGR-- 116 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc--CC------------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCch--
Confidence 346777777774 45666666555444211 10 11378888888888888888888888644211
Q ss_pred hhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchh
Q 008257 250 HELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVT 329 (572)
Q Consensus 250 ~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~ 329 (572)
...+.|+.+|.+++. .++..++.++... .....+++..+|++ .+.
T Consensus 117 -----------~a~~~L~~~L~~~~p--~vR~aal~al~~r------------~~~~~~~L~~~L~d----------~d~ 161 (410)
T TIGR02270 117 -----------QAEPWLEPLLAASEP--PGRAIGLAALGAH------------RHDPGPALEAALTH----------EDA 161 (410)
T ss_pred -----------HHHHHHHHHhcCCCh--HHHHHHHHHHHhh------------ccChHHHHHHHhcC----------CCH
Confidence 345677888877775 7777776665541 12345677777765 245
Q ss_pred hHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHh
Q 008257 330 PFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENL 388 (572)
Q Consensus 330 ~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~l 388 (572)
.+...++.+|..+.. ...+|.|...+.+. ++.|+..|++++..+
T Consensus 162 ~Vra~A~raLG~l~~--------------~~a~~~L~~al~d~-~~~VR~aA~~al~~l 205 (410)
T TIGR02270 162 LVRAAALRALGELPR--------------RLSESTLRLYLRDS-DPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHHHHHHhhcc--------------ccchHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence 667778888776642 24557777788887 888888888888655
No 57
>PF05536 Neurochondrin: Neurochondrin
Probab=98.30 E-value=0.00042 Score=74.82 Aligned_cols=231 Identities=18% Similarity=0.187 Sum_probs=148.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCcc----hHHHHHHcCCcHHHHHHHccC-------CHHHHHHHHHHHHHhccCcchh
Q 008257 2 TSSKSENLLTVEKAEKTLANLEKCEN----NVRQMAENGRLQPLLTQILEG-------PQETKLSLAAFLGDLALNSDVK 70 (572)
Q Consensus 2 ~~~~s~~~~~~~~A~~~L~~L~~~~~----n~~~i~~~g~i~~Lv~~L~~~-------~~~~~~~aa~~L~~l~~~~~~k 70 (572)
.|+++.+-+-+-.+..++.++..+++ .++.+.++=+.+.|-++|+++ +...+.-|...|...+.+++..
T Consensus 12 ~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a 91 (543)
T PF05536_consen 12 SLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELA 91 (543)
T ss_pred HHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhh
Confidence 46778884445556677788876433 245688887888888888873 3445566777777777755543
Q ss_pred H--HHHhhhHHHHHHhcccCCH-HHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHH
Q 008257 71 V--LVARTVGSCLINIMKSGNM-QAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILA 147 (572)
Q Consensus 71 ~--~i~~~g~~~Lv~lL~s~~~-~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~ 147 (572)
. .+. .-+|.|++.+.+.+. .....|+.+|..++..++.++.+++.|+|+.|++.+.++ +..++.|..++.
T Consensus 92 ~~~~~~-~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~------~~~~E~Al~lL~ 164 (543)
T PF05536_consen 92 SSPQMV-SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ------SFQMEIALNLLL 164 (543)
T ss_pred cCHHHH-HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC------cchHHHHHHHHH
Confidence 2 121 124999999987666 889999999999999999999999999999999999763 567899999999
Q ss_pred HHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCC-------ccHHHHHHHHhcCChH
Q 008257 148 NVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPT-------TVLSVVSAIKSSGATI 220 (572)
Q Consensus 148 nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~-------~~~~~~~~i~~~g~i~ 220 (572)
++...... . ....+.. .-..+++.+-+.........+..++..|..+-...+ ..+... .....
T Consensus 165 ~Lls~~~~-~--~~~~~~~--~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~-----~~l~~ 234 (543)
T PF05536_consen 165 NLLSRLGQ-K--SWAEDSQ--LLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWL-----SDLRK 234 (543)
T ss_pred HHHHhcch-h--hhhhhHH--HHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhH-----HHHHH
Confidence 99864321 1 0000000 011234444444444445556666666665533221 001111 12233
Q ss_pred HHHHHhcCC-CHHHHHHHHHHHHHcCCCCC
Q 008257 221 SLVQFVEAP-QNDLRLASIELIQNLSPHMG 249 (572)
Q Consensus 221 ~Lv~lL~~~-~~~v~~~a~~~L~~Ls~~~~ 249 (572)
.+..+|.++ .+..|..+..+.+.|.+..+
T Consensus 235 gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 235 GLRDILQSRLTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 445566665 46778888888777765433
No 58
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=1.1e-05 Score=84.40 Aligned_cols=319 Identities=15% Similarity=0.165 Sum_probs=188.2
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcH-HH-HH---HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEPSA-KV-LI---HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG 153 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~-~~-iv---~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~ 153 (572)
|.|.++|.+.+...++.|.+||.+++.+.... +. .- -.=.+|.++++.+.++ +.+|..|..++-.....
T Consensus 131 p~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~s-----pkiRs~A~~cvNq~i~~- 204 (885)
T KOG2023|consen 131 PQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPS-----PKIRSHAVGCVNQFIII- 204 (885)
T ss_pred HHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCC-----hhHHHHHHhhhhheeec-
Confidence 88999999999999999999999999754321 00 00 1235788888887653 78888777765443221
Q ss_pred CCCCccccCCCccc-cchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHH
Q 008257 154 HDFDSITVGPDNQT-LVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQND 232 (572)
Q Consensus 154 ~~~~~~~~~~~~~~-l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 232 (572)
+.... ..-..++..+..+-...++++|.+.+++|..|...... ..... -.+.++.++...+..+++
T Consensus 205 ---------~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d--kl~ph--l~~IveyML~~tqd~dE~ 271 (885)
T KOG2023|consen 205 ---------QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD--KLVPH--LDNIVEYMLQRTQDVDEN 271 (885)
T ss_pred ---------CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH--hcccc--hHHHHHHHHHHccCcchh
Confidence 11111 12244666777777789999999999999988765321 11111 135677777887888888
Q ss_pred HHHHHHHHHHHcCCCC-Chh-HHHHHhcccCChhhHHhhhccCCC-ChHHH-----------------------------
Q 008257 233 LRLASIELIQNLSPHM-GHE-LADALRGAVGQLGSLIRVISENVG-ISKEQ----------------------------- 280 (572)
Q Consensus 233 v~~~a~~~L~~Ls~~~-~~~-~~~~i~~~~g~l~~Lv~lL~~~~~-~~~~~----------------------------- 280 (572)
|--.|+.....++... ..+ +...+. ..+|.|++=+..++. ..-..
T Consensus 272 VALEACEFwla~aeqpi~~~~L~p~l~---kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~ 348 (885)
T KOG2023|consen 272 VALEACEFWLALAEQPICKEVLQPYLD---KLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGE 348 (885)
T ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHH---HHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcc
Confidence 8888998888887542 112 111222 345666554432221 00000
Q ss_pred ----------------HHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhh-HHHHHHHHHHHHh
Q 008257 281 ----------------AAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTP-FLEGLLSVLARVT 343 (572)
Q Consensus 281 ----------------~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~-~~e~a~~aL~~l~ 343 (572)
.-.-|-|+.|+...-+.-.-+.....+|.+.-+|+..-.. ..| ++|..+-||.-++
T Consensus 349 ~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~-------~~W~vrEagvLAlGAIA 421 (885)
T KOG2023|consen 349 DADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSS-------EEWKVREAGVLALGAIA 421 (885)
T ss_pred ccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCc-------chhhhhhhhHHHHHHHH
Confidence 0000112222211111112334455677777777753211 223 5666666666665
Q ss_pred ccCCCChHHHHHHHHc--CchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccc
Q 008257 344 FVLSDEPDAIALCCEH--NLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVIT 421 (572)
Q Consensus 344 ~~~~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (572)
. ...+-+..+ -.||.|+++|.+. .+.||.-.+|+|..++.-.....
T Consensus 422 E------GcM~g~~p~LpeLip~l~~~L~DK-kplVRsITCWTLsRys~wv~~~~------------------------- 469 (885)
T KOG2023|consen 422 E------GCMQGFVPHLPELIPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQDS------------------------- 469 (885)
T ss_pred H------HHhhhcccchHHHHHHHHHHhccC-ccceeeeeeeeHhhhhhhHhcCC-------------------------
Confidence 2 222223322 2689999999998 89999999999988764221110
Q ss_pred cccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhc
Q 008257 422 GLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDD 473 (572)
Q Consensus 422 ~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~ 473 (572)
..+| +. ..+.+|++.+-.++.+|+++|+.|+.++-.+
T Consensus 470 ------------~~~~-f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 470 ------------RDEY-FK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred ------------hHhh-hH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 1111 11 1445556666678899999999999988643
No 59
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.27 E-value=0.00055 Score=70.25 Aligned_cols=276 Identities=14% Similarity=0.149 Sum_probs=183.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHHcCCC--CC
Q 008257 174 VHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP--QNDLRLASIELIQNLSPH--MG 249 (572)
Q Consensus 174 i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~Ls~~--~~ 249 (572)
.+.+..++-+++.+++..+.|+++.+..+.. ....+.+.+.--.++.-|..+ +..-|++|.++++.+..- ..
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~----~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~ 102 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEE----SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP 102 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH----HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence 4444444445559999999999999988863 345666666655666666543 355689999999988743 12
Q ss_pred hhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchh
Q 008257 250 HELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVT 329 (572)
Q Consensus 250 ~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~ 329 (572)
.+ +.. |.+..+|.+.+.+++ ..+..++.+|+.++-.+++. +.++||+..|++.+.+. ..
T Consensus 103 ~~----~~~--~vvralvaiae~~~D--~lr~~cletL~El~l~~P~l---v~~~gG~~~L~~~l~d~----------~~ 161 (371)
T PF14664_consen 103 KE----IPR--GVVRALVAIAEHEDD--RLRRICLETLCELALLNPEL---VAECGGIRVLLRALIDG----------SF 161 (371)
T ss_pred cc----CCH--HHHHHHHHHHhCCch--HHHHHHHHHHHHHHhhCHHH---HHHcCCHHHHHHHHHhc----------cH
Confidence 22 222 677889999988887 89999999999998877755 78999999999999862 12
Q ss_pred hHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccC------CcH--HHHHHHHHHHHHhhhhccccCCCCCC
Q 008257 330 PFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN------GLD--KVQMVSATALENLSLESKNLTKLPEL 401 (572)
Q Consensus 330 ~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~--~vk~~Aa~aL~~ls~~~~~~~~~~~~ 401 (572)
++.+..+.++..+- ++|..|+.++..--+..++.-..+. .+. +.-..++.++..+-++++
T Consensus 162 ~~~~~l~~~lL~lL----d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~-------- 229 (371)
T PF14664_consen 162 SISESLLDTLLYLL----DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWP-------- 229 (371)
T ss_pred hHHHHHHHHHHHHh----CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCC--------
Confidence 25778888888887 6899988776533233333322221 122 233455556666554432
Q ss_pred CCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc------
Q 008257 402 PPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV------ 475 (572)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~------ 475 (572)
.++.+. .-+..++..||+.|+.++++++...+..++.+..-+.
T Consensus 230 -------GLl~l~------------------------~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~ 278 (371)
T PF14664_consen 230 -------GLLYLS------------------------MNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTES 278 (371)
T ss_pred -------ceeeee------------------------cCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccc
Confidence 111111 1122488999999999999999999999998862111
Q ss_pred -----------cc------h---------------------h-----hHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHH
Q 008257 476 -----------DI------E---------------------Q-----GVMVLCEAQGIKPILDVLLEKRTENLQRRAVWV 512 (572)
Q Consensus 476 -----------~~------~---------------------~-----~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~ 512 (572)
.+ . + ....+.++|-++.|+++..+.+++.+..+|.-.
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlL 358 (371)
T PF14664_consen 279 FLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLL 358 (371)
T ss_pred hhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHH
Confidence 00 0 0 023466778888888888544477888888887
Q ss_pred HHHHH
Q 008257 513 VERIL 517 (572)
Q Consensus 513 l~~l~ 517 (572)
|..+.
T Consensus 359 L~elL 363 (371)
T PF14664_consen 359 LGELL 363 (371)
T ss_pred HHHHH
Confidence 77765
No 60
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.26 E-value=7.4e-05 Score=75.20 Aligned_cols=175 Identities=15% Similarity=0.162 Sum_probs=130.9
Q ss_pred HHHHhhhH-HHHHHhcccCCHHH--HHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHH
Q 008257 71 VLVARTVG-SCLINIMKSGNMQA--REAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILA 147 (572)
Q Consensus 71 ~~i~~~g~-~~Lv~lL~s~~~~~--~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~ 147 (572)
..|...|+ ..|+.|+.+++.+. +..|.+.|..+.. .+|++.++.-| +..++.+-+.. .+++++...+.+|.
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~----e~~e~aR~~~~il~ 247 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKER----EPVELARSVAGILE 247 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhc----CcHHHHHHHHHHHH
Confidence 34555567 99999999988765 7889999998774 57888888777 56666655432 45788888888888
Q ss_pred HHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhc
Q 008257 148 NVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE 227 (572)
Q Consensus 148 nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~ 227 (572)
++-++++ +....+++.||+...+-+++
T Consensus 248 ~mFKHSe-----------------------------------------------------et~~~Lvaa~~lD~vl~~~r 274 (832)
T KOG3678|consen 248 HMFKHSE-----------------------------------------------------ETCQRLVAAGGLDAVLYWCR 274 (832)
T ss_pred HHhhhhH-----------------------------------------------------HHHHHHHhhcccchheeecc
Confidence 8876532 23445678999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCCh
Q 008257 228 APQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAF 307 (572)
Q Consensus 228 ~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l 307 (572)
..++.+..+++-+|.|++-+.+.+.++.+.+. .+-..|.-+-.+.++ -.+..|.-+.+-|+. +.+.-..+.+.|.+
T Consensus 275 Rt~P~lLRH~ALAL~N~~L~~~~a~qrrmveK-r~~EWLF~LA~skDe--l~R~~AClAV~vlat-~KE~E~~VrkS~Tl 350 (832)
T KOG3678|consen 275 RTDPALLRHCALALGNCALHGGQAVQRRMVEK-RAAEWLFPLAFSKDE--LLRLHACLAVAVLAT-NKEVEREVRKSGTL 350 (832)
T ss_pred cCCHHHHHHHHHHhhhhhhhchhHHHHHHHHh-hhhhhhhhhhcchHH--HHHHHHHHHHhhhhh-hhhhhHHHhhccch
Confidence 99999999999999999987777777777775 566667776666664 567777777777776 66665666666654
Q ss_pred H
Q 008257 308 G 308 (572)
Q Consensus 308 ~ 308 (572)
.
T Consensus 351 a 351 (832)
T KOG3678|consen 351 A 351 (832)
T ss_pred h
Confidence 3
No 61
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.26 E-value=8.2e-06 Score=68.51 Aligned_cols=114 Identities=18% Similarity=0.086 Sum_probs=98.4
Q ss_pred cCCcHHHHHHHc-cCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHH
Q 008257 35 NGRLQPLLTQIL-EGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKV 112 (572)
Q Consensus 35 ~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~ 112 (572)
-++++.|+.-.+ ..+.+.|.....-|.|.+-++-|...+.+..+ ..+|+.|...++...+.+++.|+|++.++.|++.
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 356677776554 45788899999999999999999999999888 9999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC
Q 008257 113 LIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG 153 (572)
Q Consensus 113 iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~ 153 (572)
|+++|++|..+..|+++ +......|+.++..|+-.+
T Consensus 95 I~ea~g~plii~~lssp-----~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSP-----PEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHhcCCceEEeecCCC-----hHHHHHHHHHHHHHhcCcc
Confidence 99999999999999875 3666778888888887543
No 62
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=0.011 Score=65.57 Aligned_cols=509 Identities=14% Similarity=0.136 Sum_probs=283.3
Q ss_pred CcchHHHHHHcCCcHHHHHHHccC---------C--HHHH--HHHHHHHHHhccCcchhHHHHhh-hH-HHHHHhcccC-
Q 008257 25 CENNVRQMAENGRLQPLLTQILEG---------P--QETK--LSLAAFLGDLALNSDVKVLVART-VG-SCLINIMKSG- 88 (572)
Q Consensus 25 ~~~n~~~i~~~g~i~~Lv~~L~~~---------~--~~~~--~~aa~~L~~l~~~~~~k~~i~~~-g~-~~Lv~lL~s~- 88 (572)
+.-|-.+++..|+++.|...++.. + +.++ .....++...+..++.|..+.+- .+ .-|+.++.-+
T Consensus 1416 SaLNaEELrRdnGle~L~tafSRCv~Vvt~~s~p~dmav~vc~~v~~c~SVaaQFE~cR~~~~EmPSiI~Dl~r~l~f~~ 1495 (2235)
T KOG1789|consen 1416 SALNAEELRRDNGLEALVTAFSRCVPVVTMSSLPDDMAVRVCIHVCDCFSVAAQFEACRQRLMEMPSIIGDLTRLLQFSN 1495 (2235)
T ss_pred hhcCHHHHhhcccHHHHHHHHhhhheeeccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcc
Confidence 556788999999999998887642 1 1222 33445555556677778777764 44 7777887754
Q ss_pred CHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccC--------CCCCCcc-------hHHHHHHHHHHHHhcC
Q 008257 89 NMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVG--------SNHLPMR-------LKEVSATILANVVNSG 153 (572)
Q Consensus 89 ~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~--------~~~~~~~-------~~~~aa~~L~nla~~~ 153 (572)
-|.+...|+.++..++.+..-.-.+..+|++=.|+.+|...+ ..+.... +-..+..+|..|+...
T Consensus 1496 vPr~~~aa~qci~~~aVd~~LQ~~LfqAG~LWYlLp~Lf~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~~ 1575 (2235)
T KOG1789|consen 1496 LPRLSTAAAQCIRAMAVDTLLQFQLFQAGVLWYLLPHLFHYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGFR 1575 (2235)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHhcccccccccCccccccchHHHHHHHHHHHHHHHHHHHhccc
Confidence 467788999999999998888888999999999999885322 0011112 2233555666665433
Q ss_pred CCCCccccCCCccc------------cchhhhHHHHHHHHhc--CChhHH------HHHHHHHH----HccCCCCcc---
Q 008257 154 HDFDSITVGPDNQT------------LVSEDIVHNLLHLISN--TGPTIE------CKLLQVLV----GLTSSPTTV--- 206 (572)
Q Consensus 154 ~~~~~~~~~~~~~~------------l~~~~~i~~Lv~lL~~--~~~~~q------~~a~~aL~----~l~~~~~~~--- 206 (572)
.+.+...-+...+. .........+++.|++ ++|++. ...+..+- +.+.+....
T Consensus 1576 AdE~~TP~N~T~~~sL~alLTPyiAr~Lk~e~~~~iLk~LNsN~E~Py~IWNn~TRaELLeFve~Qracq~~~G~~D~~y 1655 (2235)
T KOG1789|consen 1576 ADEENTPDNDTVQASLRALLTPYIARCLKLETNDMVLKTLNSNMENPYMIWNNGTRAELLEFVERQRACQTSNGPTDELY 1655 (2235)
T ss_pred cccccCCCChhHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCCceeeecCccHHHHHHHHHHHHhccCCCCCchhhc
Confidence 22211110000000 0011123334444432 233221 11111111 011110000
Q ss_pred ----------------------------------HHHHHHHHhcCChHHHHHHhc-----------------------CC
Q 008257 207 ----------------------------------LSVVSAIKSSGATISLVQFVE-----------------------AP 229 (572)
Q Consensus 207 ----------------------------------~~~~~~i~~~g~i~~Lv~lL~-----------------------~~ 229 (572)
+.....+. .-|..++.-+. ++
T Consensus 1656 g~eF~Ys~h~KEliVG~ifirVYNeqPtf~l~ePk~Fa~~Ll--DyI~S~~~~l~~~~~~~~~s~d~ie~~~~V~sE~Hg 1733 (2235)
T KOG1789|consen 1656 GAEFEYSVHKKELIVGDIFIRVYNEQPTFALHEPKKFAIDLL--DYIKSHSAELTGAPKPKAISDDLIEIDWGVGSEAHG 1733 (2235)
T ss_pred cceeeehhhccceeeeeEEEEeecCCCchhhcCcHHHHHHHH--HHHHHhHHHhcCCCCccccccchhhhhcccchhhhc
Confidence 00000000 00222222111 11
Q ss_pred C----HHHHHHHHHHHHHcCCCCChhHHHHHhccc---CChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHH
Q 008257 230 Q----NDLRLASIELIQNLSPHMGHELADALRGAV---GQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQML 302 (572)
Q Consensus 230 ~----~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~---g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~ 302 (572)
| .+-.+.++.+|+|+-...+ +.+..+.... |-.+.+...|..... ..++.-|+.++..++. +.++...++
T Consensus 1734 D~lPs~~~v~m~LtAL~Nli~~nP-dlasvfgSe~~lig~F~l~~~~lr~~~~-~~iq~LaL~Vi~~~Ta-n~~Cv~~~a 1810 (2235)
T KOG1789|consen 1734 DSLPTETKVLMTLTALANLVSANP-DLASVFGSEILLIGNFPLLITYLRCRKH-PKLQILALQVILLATA-NKECVTDLA 1810 (2235)
T ss_pred CCCChHHHHHHHHHHHHHHHhhCc-chhhhccchhhhhcccHHHHHHHHHcCC-chHHHHHHHHHHHHhc-ccHHHHHHH
Confidence 1 1234567788888875532 2221111110 667778888876664 4788889999888777 677778999
Q ss_pred hCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHH
Q 008257 303 DEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSA 382 (572)
Q Consensus 303 ~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa 382 (572)
+.|.+..|+.+|.+ .++.++.++..|.-++ +++++.+...+.|++--+.+++....++.++..||
T Consensus 1811 ~~~vL~~LL~lLHS-----------~PS~R~~vL~vLYAL~----S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaA 1875 (2235)
T KOG1789|consen 1811 TCNVLTTLLTLLHS-----------QPSMRARVLDVLYALS----SNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAA 1875 (2235)
T ss_pred hhhHHHHHHHHHhc-----------ChHHHHHHHHHHHHHh----cCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHH
Confidence 99999999999986 3456788999999998 58999999999999988888888765778888888
Q ss_pred HHHHHhhhhccccCC--C-C-CC----------CCCCCCc----------ccccc------------------cc---CC
Q 008257 383 TALENLSLESKNLTK--L-P-EL----------PPSGFCA----------SIFPC------------------FS---KQ 417 (572)
Q Consensus 383 ~aL~~ls~~~~~~~~--~-~-~~----------~~~~~~~----------~~~~~------------------~~---~~ 417 (572)
..++.+....-.--+ + . .. ..|.... .++|. +. ++
T Consensus 1876 eLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~ 1955 (2235)
T KOG1789|consen 1876 ELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKD 1955 (2235)
T ss_pred HHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccC
Confidence 888877543211000 0 0 00 0000000 01110 00 00
Q ss_pred C-------ccc-------cccccccCcc---------CccchhhhhhccchHHHHHhhcCCCH--hHHHHHHHHHHHhhh
Q 008257 418 P-------VIT-------GLCRLHRGLC---------SLKETFCLLEGHAVEKLIALLDHTNE--KVVEASLAALSTVID 472 (572)
Q Consensus 418 ~-------~~~-------~~c~~~~~~~---------~~~~~~~l~~~g~i~~Lv~lL~~~~~--~v~~~A~~aL~~l~~ 472 (572)
+ ++. .-|.+.+... -.++... .=.|-++.+.+++..+++ ....--..|+..|..
T Consensus 1956 p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~-FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r 2034 (2235)
T KOG1789|consen 1956 PTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKL-FLTELLEKVLELMSRPTPEQHELDLLTKAFVELVR 2034 (2235)
T ss_pred CcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHH-HHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHH
Confidence 0 000 1111111000 0011111 112345556666655444 233334445555665
Q ss_pred cCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHH
Q 008257 473 DGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAE 552 (572)
Q Consensus 473 ~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa 552 (572)
.++ ..+..+-..|-+|.+++-+ .+.+..+-..|..+|..+..++-+.+.......+. +++..+...-.-+ -.|+
T Consensus 2035 ~hP---~LADqip~LGylPK~~~Am-~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~-~~m~~mkK~~~~~-GLA~ 2108 (2235)
T KOG1789|consen 2035 HHP---NLADQLPSLGYLPKFCTAM-CLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCID-GIMKSMKKQPSLM-GLAA 2108 (2235)
T ss_pred hCc---chhhhCCCccchHHHHHHH-HhcCCcCcHHHHHHHHHHhhccHHHHHHhccccch-hhHHHHHhcchHH-HHHH
Confidence 544 4466788889999999999 47777777788999999988877766655554554 5777666543322 2777
Q ss_pred HHHHhhcc
Q 008257 553 RALKHIDK 560 (572)
Q Consensus 553 ~aL~~L~~ 560 (572)
.+|.++..
T Consensus 2109 EalkR~~~ 2116 (2235)
T KOG1789|consen 2109 EALKRLMK 2116 (2235)
T ss_pred HHHHHHHH
Confidence 77777655
No 63
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.22 E-value=0.00026 Score=70.85 Aligned_cols=283 Identities=14% Similarity=0.071 Sum_probs=190.3
Q ss_pred cHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH--HHHHHhccc-CCHHHHHHHHHHHHHhhcCCCcHHHHH
Q 008257 38 LQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG--SCLINIMKS-GNMQAREAALKALNQISSCEPSAKVLI 114 (572)
Q Consensus 38 i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~--~~Lv~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~~iv 114 (572)
-.+.+.+|..++.-....+++.+..++.....+....+... ..|-..|++ .+.+....|++||.-+...+++|-.++
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v 195 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFV 195 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheee
Confidence 56788888888877777788888888764333333222222 556667766 667888999999999999999999999
Q ss_pred HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcC-ChhHHHHHH
Q 008257 115 HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNT-GPTIECKLL 193 (572)
Q Consensus 115 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~-~~~~q~~a~ 193 (572)
.+.|+..|+..|.+.. ....+|.+..-+++-|+-+++-. ..+...+.|+.|.+++++. ...+-.-++
T Consensus 196 ~adg~~~l~~~l~s~~---~~~QlQYqsifciWlLtFn~~~a---------e~~~~~~li~~L~~Ivk~~~KEKV~Rivl 263 (442)
T KOG2759|consen 196 IADGVSLLIRILASTK---CGFQLQYQSIFCIWLLTFNPHAA---------EKLKRFDLIQDLSDIVKESTKEKVTRIVL 263 (442)
T ss_pred ecCcchhhHHHHhccC---cchhHHHHHHHHHHHhhcCHHHH---------HHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999995433 34789999999999997654311 1235567899999999853 444555667
Q ss_pred HHHHHccCCCCcc---HHHHHHHHhcCChHHHHHHhcC--CCHHHHHHHHHHHHHc-------CCC--------------
Q 008257 194 QVLVGLTSSPTTV---LSVVSAIKSSGATISLVQFVEA--PQNDLRLASIELIQNL-------SPH-------------- 247 (572)
Q Consensus 194 ~aL~~l~~~~~~~---~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~~L-------s~~-------------- 247 (572)
.++.|+...+... ......|+.++..+.+=.|.+. .|+++....-.+-..| ++.
T Consensus 264 ai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~W 343 (442)
T KOG2759|consen 264 AIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEW 343 (442)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCC
Confidence 7788888765321 1333456666655555444433 3455555433332222 111
Q ss_pred ----CC----hhHHHHHhcc-cCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhc
Q 008257 248 ----MG----HELADALRGA-VGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQ 318 (572)
Q Consensus 248 ----~~----~~~~~~i~~~-~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~ 318 (572)
.. ++-+..+.+. .-.+..|+++|+++++ +-.-..|..=|+....+.|+.+..+.+.||=..+.+++.+
T Consensus 344 SP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~D-p~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh-- 420 (442)
T KOG2759|consen 344 SPVHKSEKFWRENADRLNENNYELLKILIKLLETSND-PIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNH-- 420 (442)
T ss_pred CccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCC-CceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcC--
Confidence 00 1122333332 1468889999998875 3455566666777777788888888899999999999987
Q ss_pred cCCCCCCcchhhHHHHHHHHHHHHh
Q 008257 319 LGETRGSRFVTPFLEGLLSVLARVT 343 (572)
Q Consensus 319 ~~~~~~~~~~~~~~e~a~~aL~~l~ 343 (572)
.++.++-+|+.|+..+-
T Consensus 421 --------~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 421 --------EDPEVRYHALLAVQKLM 437 (442)
T ss_pred --------CCchHHHHHHHHHHHHH
Confidence 35667778887776553
No 64
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.00079 Score=74.00 Aligned_cols=332 Identities=16% Similarity=0.152 Sum_probs=206.5
Q ss_pred HHHHHHHHHHhhcc-CcchHH----HHHHcCCcHHHHHHHc-cCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHH
Q 008257 11 TVEKAEKTLANLEK-CENNVR----QMAENGRLQPLLTQIL-EGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLIN 83 (572)
Q Consensus 11 ~~~~A~~~L~~L~~-~~~n~~----~i~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~ 83 (572)
-.+.+..+|.||-+ +++--. +..--|.++-+..+|. .+.+.++..+...+..+..+.+.-..++..|. ..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 45668899999876 553221 2222477777777776 45677889998888877777777777888888 89999
Q ss_pred hcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCC
Q 008257 84 IMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGP 163 (572)
Q Consensus 84 lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~ 163 (572)
||.| -|-.++.++..|..|+++.+-.....+.|++..+...+... ..+..+..||+.++.+....-...+..
T Consensus 1821 lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~----~~~QqRAqaAeLlaKl~Adkl~GPrV~--- 1892 (2235)
T KOG1789|consen 1821 LLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLT----NSDQQRAQAAELLAKLQADKLTGPRVT--- 1892 (2235)
T ss_pred HHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhcc----CcHHHHHHHHHHHHHhhhccccCCcee---
Confidence 9976 46789999999999999999888888999999988877543 236788889999999976432211111
Q ss_pred CccccchhhhH------------HHHHHHHh--cCChhH------HHHHHHHHHHccC--------CCCc----------
Q 008257 164 DNQTLVSEDIV------------HNLLHLIS--NTGPTI------ECKLLQVLVGLTS--------SPTT---------- 205 (572)
Q Consensus 164 ~~~~l~~~~~i------------~~Lv~lL~--~~~~~~------q~~a~~aL~~l~~--------~~~~---------- 205 (572)
|.--.++ +..|.++. ++.|++ +.+....+..+.. ++..
T Consensus 1893 ----ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg 1968 (2235)
T KOG1789|consen 1893 ----ITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAG 1968 (2235)
T ss_pred ----eehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcc
Confidence 1111111 22222332 122222 1111111111110 0000
Q ss_pred -----------cHHHHHHHHhc------------CChHHHHHHhcCCCHH--HHHHHHHHHHHcCCCCChhHHHHHhccc
Q 008257 206 -----------VLSVVSAIKSS------------GATISLVQFVEAPQND--LRLASIELIQNLSPHMGHELADALRGAV 260 (572)
Q Consensus 206 -----------~~~~~~~i~~~------------g~i~~Lv~lL~~~~~~--v~~~a~~~L~~Ls~~~~~~~~~~i~~~~ 260 (572)
..-+|..+.+. |-+..+.+++..++++ .-..-..++-.|-++. ...++.+..-
T Consensus 1969 ~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~h-P~LADqip~L- 2046 (2235)
T KOG1789|consen 1969 TSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHH-PNLADQLPSL- 2046 (2235)
T ss_pred hhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhC-cchhhhCCCc-
Confidence 00111111111 1134455555554432 1112222333333332 3455677766
Q ss_pred CChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHH
Q 008257 261 GQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLA 340 (572)
Q Consensus 261 g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~ 340 (572)
|.+|.++.-+...+. ..-..|+++|-.|+. +.-+.+.+.....+..++..++.. .....-|+.+|-
T Consensus 2047 GylPK~~~Am~~~n~--s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK~-----------~~~~GLA~Ealk 2112 (2235)
T KOG1789|consen 2047 GYLPKFCTAMCLQNT--SAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKKQ-----------PSLMGLAAEALK 2112 (2235)
T ss_pred cchHHHHHHHHhcCC--cCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHhc-----------chHHHHHHHHHH
Confidence 999999999877664 455778899999887 566778888888888898888751 222445777777
Q ss_pred HHhccCCCChHHHHHHHHcCchHHHHHHhccC
Q 008257 341 RVTFVLSDEPDAIALCCEHNLAALFIELLQSN 372 (572)
Q Consensus 341 ~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~ 372 (572)
++-.. ...+.-.+..+.|.+|.|.+||...
T Consensus 2113 R~~~r--~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2113 RLMKR--NTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHHHH--hHHHHHHHHhccCcHHHHHHHhccc
Confidence 66543 3445566678899999999999975
No 65
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.0038 Score=66.99 Aligned_cols=439 Identities=12% Similarity=0.097 Sum_probs=235.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcc-CcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC-cchhHHHH---hhhH
Q 008257 4 SKSENLLTVEKAEKTLANLEK-CENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN-SDVKVLVA---RTVG 78 (572)
Q Consensus 4 ~~s~~~~~~~~A~~~L~~L~~-~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~-~~~k~~i~---~~g~ 78 (572)
.+++|.+++..|...|..+.+ ..+...--.+...+.--+..+++.++++...+.+.=.+++.. -+.-.... +.|-
T Consensus 226 tq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~ 305 (859)
T KOG1241|consen 226 TQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGL 305 (859)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 589999999999999998876 555554444555666667788889999988888776655441 11111111 1111
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCC--CCcchHHHHHHHHHHHHhcCCCC
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNH--LPMRLKEVSATILANVVNSGHDF 156 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~--~~~~~~~~aa~~L~nla~~~~~~ 156 (572)
|| .....|-.+ -.+.+|.|+++|...++|+ .+=..-..|..+|.-.+....+.
T Consensus 306 ~p----------~~~~fa~~a---------------~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~ 360 (859)
T KOG1241|consen 306 PP----------SSKYFARQA---------------LQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD 360 (859)
T ss_pred Cc----------hhhHHHHHH---------------HhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc
Confidence 22 112222222 2468899999997644331 11233445556666666543321
Q ss_pred CccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHH
Q 008257 157 DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLA 236 (572)
Q Consensus 157 ~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 236 (572)
|+ +.++|-+=.-+++++..-++.++-++..+-..++. .+..=...+++|.++.++..+..-++..
T Consensus 361 -----------Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~---~~Lt~iV~qalp~ii~lm~D~sl~VkdT 425 (859)
T KOG1241|consen 361 -----------IV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP---DKLTPIVIQALPSIINLMSDPSLWVKDT 425 (859)
T ss_pred -----------ch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch---hhhhHHHhhhhHHHHHHhcCchhhhcch
Confidence 11 13333333466678888889999999988887764 2222234789999999999777788999
Q ss_pred HHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhC-------CChHH
Q 008257 237 SIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDE-------GAFGL 309 (572)
Q Consensus 237 a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~-------g~l~~ 309 (572)
++|.|..++++.+..+-...-.. +.+..|+.-|.... .+-..+.|++.+|+..-.+ ...+. -.++.
T Consensus 426 aAwtlgrI~d~l~e~~~n~~~l~-~~l~~l~~gL~DeP---rva~N~CWAf~~Laea~~e---A~~s~~qt~~~t~~y~~ 498 (859)
T KOG1241|consen 426 AAWTLGRIADFLPEAIINQELLQ-SKLSALLEGLNDEP---RVASNVCWAFISLAEAAYE---AAVSNGQTDPATPFYEA 498 (859)
T ss_pred HHHHHHHHHhhchhhcccHhhhh-HHHHHHHHHhhhCc---hHHHHHHHHHHHHHHHHHH---hccCCCCCCccchhHHH
Confidence 99999999977442221111111 33444444443332 6777888888888642111 11111 23455
Q ss_pred HHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHH---------HhccC---CcHHH
Q 008257 310 IFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIE---------LLQSN---GLDKV 377 (572)
Q Consensus 310 Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~---------lL~~~---~~~~v 377 (572)
++.-|-.. ..+.+-....++..+-.||..+... .++.--.++ .+..+...+ .|... .-.++
T Consensus 499 ii~~Ll~~---tdr~dgnqsNLR~AAYeALmElIk~---st~~vy~~v-~~~~l~il~kl~q~i~~~~l~~~dr~q~~eL 571 (859)
T KOG1241|consen 499 IIGSLLKV---TDRADGNQSNLRSAAYEALMELIKN---STDDVYPMV-QKLTLVILEKLDQTISSQILSLADRAQLNEL 571 (859)
T ss_pred HHHHHHhh---ccccccchhhHHHHHHHHHHHHHHc---CcHHHHHHH-HHHHHHHHHHHHHHHHHHhccHhhHHHHHHH
Confidence 55433321 1111112334455566666655532 222111111 111111111 11111 01123
Q ss_pred HHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcC-CC
Q 008257 378 QMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDH-TN 456 (572)
Q Consensus 378 k~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~-~~ 456 (572)
|..-+..|..+.+.... + +.=+.......|++++.+ .+
T Consensus 572 Qs~Lc~~Lq~i~rk~~~--~---------------------------------------~~~~~d~iM~lflri~~s~~s 610 (859)
T KOG1241|consen 572 QSLLCNTLQSIIRKVGS--D---------------------------------------IREVSDQIMGLFLRIFESKRS 610 (859)
T ss_pred HHHHHHHHHHHHHHccc--c---------------------------------------chhHHHHHHHHHHHHHcCCcc
Confidence 33333334333221110 0 000122344577888887 55
Q ss_pred HhHHHHHHHHHHHhhhcCc-cchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc-hhhhhhhcCCCCchH
Q 008257 457 EKVVEASLAALSTVIDDGV-DIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT-DDIAYEVSGDPNVST 534 (572)
Q Consensus 457 ~~v~~~A~~aL~~l~~~~~-~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~ 534 (572)
.-+.+.|..|++.++..-. .+.+... --+|.|..=|++..+-.+-..|+.+...+++. ++.-..+.. .+..
T Consensus 611 ~~v~e~a~laV~tl~~~Lg~~F~kym~-----~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d--~~mt 683 (859)
T KOG1241|consen 611 AVVHEEAFLAVSTLAESLGKGFAKYMP-----AFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCD--ELMT 683 (859)
T ss_pred ccchHHHHHHHHHHHHHHhHhHHHHHH-----HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHH
Confidence 5678889999999886421 1211111 23466766664333444556677778888765 332234443 3445
Q ss_pred HHHHHhhcCC
Q 008257 535 ALVDAFQHAD 544 (572)
Q Consensus 535 ~Lv~ll~~~~ 544 (572)
.|++-|.++.
T Consensus 684 ~Lvq~Lss~~ 693 (859)
T KOG1241|consen 684 VLVQCLSSPN 693 (859)
T ss_pred HHHHHccCcc
Confidence 7888887765
No 66
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.10 E-value=5.6e-06 Score=55.96 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=36.6
Q ss_pred CcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhc
Q 008257 66 NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISS 105 (572)
Q Consensus 66 ~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~ 105 (572)
+++++..+.+.|+ |+|+++|+++++++++.|+++|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 3578889999988 999999999999999999999999974
No 67
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.00 E-value=0.004 Score=63.64 Aligned_cols=279 Identities=22% Similarity=0.234 Sum_probs=178.0
Q ss_pred CChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHH
Q 008257 117 GILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVL 196 (572)
Q Consensus 117 G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL 196 (572)
-.++.+++++.+. +..++..|++.++.+. ...+++.+..++.+.++.++..++.+|
T Consensus 43 ~~~~~~~~~l~~~-----~~~vr~~aa~~l~~~~-------------------~~~av~~l~~~l~d~~~~vr~~a~~aL 98 (335)
T COG1413 43 EAADELLKLLEDE-----DLLVRLSAAVALGELG-------------------SEEAVPLLRELLSDEDPRVRDAAADAL 98 (335)
T ss_pred hhHHHHHHHHcCC-----CHHHHHHHHHHHhhhc-------------------hHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5788888999764 3788999998877663 245799999999999999999999877
Q ss_pred HHccCCCCccHHHHHHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC
Q 008257 197 VGLTSSPTTVLSVVSAIKSSGATISLVQFVE-APQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG 275 (572)
Q Consensus 197 ~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~ 275 (572)
..+-. ..+++.|+.++. +++..+|..+.++|..+... .++..|+..+..+..
T Consensus 99 g~~~~--------------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-------------~a~~~l~~~l~~~~~ 151 (335)
T COG1413 99 GELGD--------------PEAVPPLVELLENDENEGVRAAAARALGKLGDE-------------RALDPLLEALQDEDS 151 (335)
T ss_pred HccCC--------------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-------------hhhHHHHHHhccchh
Confidence 65532 336899999999 57889999999999877533 235566666666552
Q ss_pred ----------ChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhcc
Q 008257 276 ----------ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFV 345 (572)
Q Consensus 276 ----------~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~ 345 (572)
...++..++..++.+ .+...++.+...+.+. ...++..++.+|..+...
T Consensus 152 ~~a~~~~~~~~~~~r~~a~~~l~~~-----------~~~~~~~~l~~~l~~~----------~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 152 GSAAAALDAALLDVRAAAAEALGEL-----------GDPEAIPLLIELLEDE----------DADVRRAAASALGQLGSE 210 (335)
T ss_pred hhhhhhccchHHHHHHHHHHHHHHc-----------CChhhhHHHHHHHhCc----------hHHHHHHHHHHHHHhhcc
Confidence 002344444444333 2234456677777652 335567777777777632
Q ss_pred CCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccc
Q 008257 346 LSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCR 425 (572)
Q Consensus 346 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 425 (572)
+ ..+.+.|...+.++ +..++..++.+|..+-
T Consensus 211 ---~---------~~~~~~l~~~~~~~-~~~vr~~~~~~l~~~~------------------------------------ 241 (335)
T COG1413 211 ---N---------VEAADLLVKALSDE-SLEVRKAALLALGEIG------------------------------------ 241 (335)
T ss_pred ---h---------hhHHHHHHHHhcCC-CHHHHHHHHHHhcccC------------------------------------
Confidence 1 34457777888887 8888888888775431
Q ss_pred cccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHH
Q 008257 426 LHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENL 505 (572)
Q Consensus 426 ~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~ 505 (572)
....+++++..+.+.+..+...+..++... + -......+...+ .+.+...
T Consensus 242 ---------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~l~~~~-~~~~~~~ 291 (335)
T COG1413 242 ---------------DEEAVDALAKALEDEDVILALLAAAALGAL---D-----------LAEAALPLLLLL-IDEANAV 291 (335)
T ss_pred ---------------cchhHHHHHHHHhccchHHHHHHHHHhccc---C-----------chhhHHHHHHHh-hcchhhH
Confidence 123677788888877777766555555411 0 011223444555 3566666
Q ss_pred HHHHHHHHHHHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHh
Q 008257 506 QRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557 (572)
Q Consensus 506 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~ 557 (572)
+..+...+..+... .....+.....+++..++..+...+..
T Consensus 292 ~~~~~~~l~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
T COG1413 292 RLEAALALGQIGQE-----------KAVAALLLALEDGDADVRKAALILLEG 332 (335)
T ss_pred HHHHHHHHHhhccc-----------chHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 66666666555322 111245555666666666666655543
No 68
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.0048 Score=64.13 Aligned_cols=468 Identities=11% Similarity=0.041 Sum_probs=249.3
Q ss_pred CCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHcc--CCHHHHHHHHHHHHH-hccCcchhH-HHH-------
Q 008257 6 SENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILE--GPQETKLSLAAFLGD-LALNSDVKV-LVA------- 74 (572)
Q Consensus 6 s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~--~~~~~~~~aa~~L~~-l~~~~~~k~-~i~------- 74 (572)
|.|+.+...|..-|.+|+..| +-+ ++.-|+..|-+ +++..|.-|+-+|.| +..+++.++ ...
T Consensus 16 spD~n~rl~aE~ql~~l~~~d-F~q------f~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~ 88 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGD-FEQ------FISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMR 88 (858)
T ss_pred CCCCCccccHHHHHHHhcccc-HHH------HHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCC
Confidence 456666666666666666533 211 12233444433 456677777777777 444444333 222
Q ss_pred ---hhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHH
Q 008257 75 ---RTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVV 150 (572)
Q Consensus 75 ---~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla 150 (572)
++-+ .....-|.|..+..-..|+..+..++.-+ .-.|.-|-|+.-+.....+..+...|+.+..++++++
T Consensus 89 ~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~E------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c 162 (858)
T COG5215 89 HESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARME------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHC 162 (858)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence 2223 45567788888888888888888887531 1234445555544322223466889999999999998
Q ss_pred hcCCCCCccccCCCccccchhh--hHHHHHHHHhc-CChhHHHHHHHHHHHccCC---CCccHHHHHHHHhcCChHHHHH
Q 008257 151 NSGHDFDSITVGPDNQTLVSED--IVHNLLHLISN-TGPTIECKLLQVLVGLTSS---PTTVLSVVSAIKSSGATISLVQ 224 (572)
Q Consensus 151 ~~~~~~~~~~~~~~~~~l~~~~--~i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~---~~~~~~~~~~i~~~g~i~~Lv~ 224 (572)
.+.. ++. .+...+ .+.....-++. ++..++..++.+|..-+.+ .-..++.| .-..+..++
T Consensus 163 es~~-Pe~--------li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~er-----Ny~mqvvce 228 (858)
T COG5215 163 ESEA-PED--------LIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEER-----NYFMQVVCE 228 (858)
T ss_pred hccC-HHH--------HHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhh-----chhheeeeh
Confidence 7532 111 111111 22223334443 4557788888998873221 10001112 223455667
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHH----
Q 008257 225 FVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQ---- 300 (572)
Q Consensus 225 lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~---- 300 (572)
..++++.++|..|...|..+..-.-.-+ +...+. .......+.+.++++ ++...|+---+.++....+..-.
T Consensus 229 atq~~d~e~q~aafgCl~kim~LyY~fm-~~ymE~-aL~alt~~~mks~nd--~va~qavEfWsticeEeid~~~e~~~~ 304 (858)
T COG5215 229 ATQGNDEELQHAAFGCLNKIMMLYYKFM-QSYMEN-ALAALTGRFMKSQND--EVAIQAVEFWSTICEEEIDGEMEDKYL 304 (858)
T ss_pred hccCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHhcCcch--HHHHHHHHHHHHHHHHHhhhHHHHhhc
Confidence 7788889999998888776642100111 123332 122345567777776 55555544332332211111100
Q ss_pred ---------HH---hCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHH-hccCCCChHHHHHHHHcCchHHHHH
Q 008257 301 ---------ML---DEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARV-TFVLSDEPDAIALCCEHNLAALFIE 367 (572)
Q Consensus 301 ---------l~---~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l-~~~~~~~~~~~~~i~~~g~i~~Lv~ 367 (572)
|. -.+++|.|+++|...... ...+.|=...+++++..+ +.. . ...+.+ .++..+-+
T Consensus 305 pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed----~~~DdWn~smaA~sCLqlfaq~----~--gd~i~~-pVl~FvEq 373 (858)
T COG5215 305 PEVPAQNHGFARAAVADVLPELLSLLEKQGED----YYGDDWNPSMAASSCLQLFAQL----K--GDKIMR-PVLGFVEQ 373 (858)
T ss_pred ccCchhhcchHHHHHHHHHHHHHHHHHhcCCC----ccccccchhhhHHHHHHHHHHH----h--hhHhHH-HHHHHHHH
Confidence 11 235789999999762211 112344345555555443 311 1 111222 13333334
Q ss_pred HhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHH
Q 008257 368 LLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEK 447 (572)
Q Consensus 368 lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~ 447 (572)
-++++ +-.-++.|+.|++.+-..... .| -+. + -..++|.
T Consensus 374 ni~~~-~w~nreaavmAfGSvm~gp~~----------------------------~~----------lT~-~-V~qalp~ 412 (858)
T COG5215 374 NIRSE-SWANREAAVMAFGSVMHGPCE----------------------------DC----------LTK-I-VPQALPG 412 (858)
T ss_pred hccCc-hhhhHHHHHHHhhhhhcCccH----------------------------HH----------HHh-h-HHhhhHH
Confidence 45555 666677777787765321100 00 111 1 2348899
Q ss_pred HHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHH-hh-cCCHHHHHHHHHHHHHHHcc-hhhhh
Q 008257 448 LIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVL-LE-KRTENLQRRAVWVVERILRT-DDIAY 524 (572)
Q Consensus 448 Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL-~~-~~~~~~~~~a~~~l~~l~~~-~~~~~ 524 (572)
+..+...+.--++..++++++.++.+ ....|-.+|-+++.++-. .+ ..++.+-.+..|.+.++..| .+..+
T Consensus 413 i~n~m~D~~l~vk~ttAwc~g~iad~------va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~ 486 (858)
T COG5215 413 IENEMSDSCLWVKSTTAWCFGAIADH------VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVR 486 (858)
T ss_pred HHHhcccceeehhhHHHHHHHHHHHH------HHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhc
Confidence 99999888889999999999999853 245666777777655332 22 23466777888999999877 22211
Q ss_pred hh-cCCCCchHHHHHHhhc------CCchhHHHHHHHHHhhcccC
Q 008257 525 EV-SGDPNVSTALVDAFQH------ADYRTRQIAERALKHIDKIP 562 (572)
Q Consensus 525 ~~-~~~~~~~~~Lv~ll~~------~~~~~~~~Aa~aL~~L~~~~ 562 (572)
+. ..-..+...+++-|-. ++...|..+=.+|.-|--+.
T Consensus 487 ~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~ 531 (858)
T COG5215 487 EVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILIC 531 (858)
T ss_pred cccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhc
Confidence 11 1111222344444332 33455666666666655443
No 69
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.002 Score=69.15 Aligned_cols=68 Identities=12% Similarity=0.236 Sum_probs=46.8
Q ss_pred cchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHc
Q 008257 443 HAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILR 518 (572)
Q Consensus 443 g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~ 518 (572)
-++..||.||++.++.|+..++..+-.|.+..+. ..-+ -|..|..++....-+..|....|++..++.
T Consensus 429 tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~--~h~~------ii~~La~lldti~vp~ARA~IiWLige~~e 496 (968)
T KOG1060|consen 429 TCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA--EHLE------ILFQLARLLDTILVPAARAGIIWLIGEYCE 496 (968)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH--HHHH------HHHHHHHHhhhhhhhhhhceeeeeehhhhh
Confidence 3778899999999999999999999999976541 1111 234566666433335566666677776653
No 70
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.009 Score=64.64 Aligned_cols=92 Identities=13% Similarity=0.025 Sum_probs=58.6
Q ss_pred CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhHHHHH
Q 008257 4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVGSCLI 82 (572)
Q Consensus 4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~~~Lv 82 (572)
|+|.+.-++..|+.+|.+++.-+ -.+. ..|-..++|++.++-+|.+|+-|..++-. .++.- +.-.+..-
T Consensus 116 L~s~nq~vVglAL~alg~i~s~E-mard-----lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~----e~f~~~~~ 185 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNICSPE-MARD-----LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV----EHFVIAFR 185 (866)
T ss_pred ccCCCeeehHHHHHHhhccCCHH-HhHH-----hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH----HHhhHHHH
Confidence 56777778888999999988633 2222 23444567888999999999988877654 22211 11125555
Q ss_pred HhcccCCHHHHHHHHHHHHHhhc
Q 008257 83 NIMKSGNMQAREAALKALNQISS 105 (572)
Q Consensus 83 ~lL~s~~~~~~~~A~~aL~~Ls~ 105 (572)
++|.+.++-+-..++..+..++.
T Consensus 186 ~lL~ek~hGVL~~~l~l~~e~c~ 208 (866)
T KOG1062|consen 186 KLLCEKHHGVLIAGLHLITELCK 208 (866)
T ss_pred HHHhhcCCceeeeHHHHHHHHHh
Confidence 66666565555556666666665
No 71
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0032 Score=65.38 Aligned_cols=351 Identities=14% Similarity=0.149 Sum_probs=198.4
Q ss_pred HHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccch-hhhHHHHHHHHhcCChhHHHHH
Q 008257 114 IHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVS-EDIVHNLLHLISNTGPTIECKL 192 (572)
Q Consensus 114 v~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~-~~~i~~Lv~lL~~~~~~~q~~a 192 (572)
.-.+.+||.+..+... +..++..|++.|.|++....+ ..+.- +.....|-++-..++..++. +
T Consensus 81 Y~~~iv~Pv~~cf~D~-----d~~vRyyACEsLYNiaKv~k~----------~v~~~Fn~iFdvL~klsaDsd~~V~~-~ 144 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQ-----DSQVRYYACESLYNIAKVAKG----------EVLVYFNEIFDVLCKLSADSDQNVRG-G 144 (675)
T ss_pred HHHHhhHHHHHhccCc-----cceeeeHhHHHHHHHHHHhcc----------CcccchHHHHHHHHHHhcCCcccccc-H
Confidence 5578899999999754 378999999999999975321 12222 22222333333334444433 2
Q ss_pred HHHHHHccCCCCccHHHHHHHHh--------cCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChh
Q 008257 193 LQVLVGLTSSPTTVLSVVSAIKS--------SGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLG 264 (572)
Q Consensus 193 ~~aL~~l~~~~~~~~~~~~~i~~--------~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~ 264 (572)
+..|-.+ .+.|.. .+.||.|-+-+...++..|..-+.-|..|-.-.+-+....+. ..++
T Consensus 145 aeLLdRL----------ikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~---~~ld 211 (675)
T KOG0212|consen 145 AELLDRL----------IKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLP---SLLD 211 (675)
T ss_pred HHHHHHH----------HHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcch---HHHH
Confidence 2222222 112221 223444445555667888888877777775443444332333 3677
Q ss_pred hHHhhhccCCCChHHHHHHHHHHhcCCC---CcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHH
Q 008257 265 SLIRVISENVGISKEQAAAVGLLAELPE---RDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLAR 341 (572)
Q Consensus 265 ~Lv~lL~~~~~~~~~~~~A~~~L~~L~~---~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~ 341 (572)
-|..+|+.++. +++..+-.+++++-. +++.. +--...++.++.-+.+ ..+.++..|+..+..
T Consensus 212 GLf~~LsD~s~--eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~s----------s~~~iq~~al~Wi~e 276 (675)
T KOG0212|consen 212 GLFNMLSDSSD--EVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQS----------SEPEIQLKALTWIQE 276 (675)
T ss_pred HHHHHhcCCcH--HHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccC----------CcHHHHHHHHHHHHH
Confidence 88899988886 777666555554321 11111 0112345555555543 356777788877777
Q ss_pred HhccCCCChHHHHHHHHcCchHHHHHHhccCCcH-HHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCcc
Q 008257 342 VTFVLSDEPDAIALCCEHNLAALFIELLQSNGLD-KVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVI 420 (572)
Q Consensus 342 l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (572)
|..- +...-...-.|++..+..++.+. .+ .++..+...=..+..-......
T Consensus 277 fV~i----~g~~~l~~~s~il~~iLpc~s~~-e~~~i~~~a~~~n~~l~~l~s~~~~----------------------- 328 (675)
T KOG0212|consen 277 FVKI----PGRDLLLYLSGILTAILPCLSDT-EEMSIKEYAQMVNGLLLKLVSSERL----------------------- 328 (675)
T ss_pred HhcC----CCcchhhhhhhhhhhcccCCCCC-ccccHHHHHHHHHHHHHHHHhhhhh-----------------------
Confidence 7632 11111223345545555555554 33 3454444332112110000000
Q ss_pred ccccccccCccCccchhhhhh-ccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhh
Q 008257 421 TGLCRLHRGLCSLKETFCLLE-GHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLE 499 (572)
Q Consensus 421 ~~~c~~~~~~~~~~~~~~l~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~ 499 (572)
... ++ ...|..|-+.|.+..++++.+++.-+..|-...+ +.-......-++-|+.-| .
T Consensus 329 -------------~~~---id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p----~ql~~h~~~if~tLL~tL-s 387 (675)
T KOG0212|consen 329 -------------KEE---IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP----GQLLVHNDSIFLTLLKTL-S 387 (675)
T ss_pred -------------ccc---cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc----chhhhhccHHHHHHHHhh-c
Confidence 000 11 1256788899999999999999998888875432 223333444555677777 5
Q ss_pred cCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhccc
Q 008257 500 KRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKI 561 (572)
Q Consensus 500 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~ 561 (572)
.+++++...+...++.++...+... + -.+...|.+++.....-...++..++.+|+-+
T Consensus 388 d~sd~vvl~~L~lla~i~~s~~~~~-~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 388 DRSDEVVLLALSLLASICSSSNSPN-L---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred CchhHHHHHHHHHHHHHhcCccccc-H---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 7788888999999999997644321 1 12224677777777777777888888887653
No 72
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.97 E-value=9.9e-05 Score=62.15 Aligned_cols=116 Identities=17% Similarity=0.159 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhc
Q 008257 7 ENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIM 85 (572)
Q Consensus 7 ~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL 85 (572)
.|.++++.-..=|.|.++++.|...+.+..+++-++..|.+.++..+..+...|+|++.+..+++.|.+.++ |..+..|
T Consensus 29 t~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~l 108 (173)
T KOG4646|consen 29 TNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVL 108 (173)
T ss_pred ccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeec
Confidence 466788888888899999999999999999999999999999999999999999999999999999999877 9999999
Q ss_pred ccCCHHHHHHHHHHHHHhhcCCCc-HHHHHHcCChHHHHHHH
Q 008257 86 KSGNMQAREAALKALNQISSCEPS-AKVLIHAGILPPLVKDL 126 (572)
Q Consensus 86 ~s~~~~~~~~A~~aL~~Ls~~~~~-~~~iv~~G~i~~Lv~lL 126 (572)
+|........|+..|..|+-.... +..+. -|+.++..
T Consensus 109 ssp~e~tv~sa~~~l~~l~~~~Rt~r~ell----~p~Vv~~v 146 (173)
T KOG4646|consen 109 SSPPEITVHSAALFLQLLEFGERTERDELL----SPAVVRTV 146 (173)
T ss_pred CCChHHHHHHHHHHHHHhcCcccchhHHhc----cHHHHHHH
Confidence 999989999999999998864433 55553 34445544
No 73
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=0.01 Score=62.72 Aligned_cols=341 Identities=15% Similarity=0.153 Sum_probs=197.5
Q ss_pred cHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHc
Q 008257 38 LQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHA 116 (572)
Q Consensus 38 i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~ 116 (572)
++.|+.-+..+++.+|+-.+.+|..+....+.+. ..-. +.+.++|.+.....+..|++.+..+..+. ....+.+.
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~---~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~-~i~~~~~~ 173 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS---GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL-GIESLKEF 173 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC---HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc-HHhhhhhh
Confidence 4555666677788888888888876654222111 1123 88889999888889999999999887542 34566688
Q ss_pred CChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHh---cCChhHHHHHH
Q 008257 117 GILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS---NTGPTIECKLL 193 (572)
Q Consensus 117 G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~---~~~~~~q~~a~ 193 (572)
+.+..|-....... +..-++ ++..-.......- ....+.+.++.+-.+|. +..+.+|..+.
T Consensus 174 ~~l~~l~~ai~dk~----~~~~re-~~~~a~~~~~~~L-----------g~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~ 237 (569)
T KOG1242|consen 174 GFLDNLSKAIIDKK----SALNRE-AALLAFEAAQGNL-----------GPPFEPYIVPILPSILTNFGDKINKVREAAV 237 (569)
T ss_pred hHHHHHHHHhcccc----hhhcHH-HHHHHHHHHHHhc-----------CCCCCchHHhhHHHHHHHhhccchhhhHHHH
Confidence 88888888876542 122233 2222222211110 02244556666666665 34566776555
Q ss_pred HHHHHccC-CCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhcc
Q 008257 194 QVLVGLTS-SPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISE 272 (572)
Q Consensus 194 ~aL~~l~~-~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~ 272 (572)
.+...+-. .+.. .++ -.+|+++.-+....-..+..++.+|..++.+.+..+...+. ..+|.|.+.|..
T Consensus 238 ~a~kai~~~~~~~--aVK------~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp---~iiP~lsevl~D 306 (569)
T KOG1242|consen 238 EAAKAIMRCLSAY--AVK------LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLP---DLIPVLSEVLWD 306 (569)
T ss_pred HHHHHHHHhcCcc--hhh------HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHh---HhhHHHHHHHcc
Confidence 44433321 1110 111 12444444444334567889999999999886655532222 589999999988
Q ss_pred CCCChHHHHHHHHHHhcCCC--CcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCCh
Q 008257 273 NVGISKEQAAAVGLLAELPE--RDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEP 350 (572)
Q Consensus 273 ~~~~~~~~~~A~~~L~~L~~--~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~ 350 (572)
... +++.++..++..+.. .++++ + -.+|.|+..+.++. +. ...++..|..=+...+=++
T Consensus 307 T~~--evr~a~~~~l~~~~svidN~dI-~-----~~ip~Lld~l~dp~----------~~-~~e~~~~L~~ttFV~~V~~ 367 (569)
T KOG1242|consen 307 TKP--EVRKAGIETLLKFGSVIDNPDI-Q-----KIIPTLLDALADPS----------CY-TPECLDSLGATTFVAEVDA 367 (569)
T ss_pred CCH--HHHHHHHHHHHHHHHhhccHHH-H-----HHHHHHHHHhcCcc----------cc-hHHHHHhhcceeeeeeecc
Confidence 885 899999999887754 23333 2 23577777777632 01 1223333332111100012
Q ss_pred HHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCc
Q 008257 351 DAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGL 430 (572)
Q Consensus 351 ~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 430 (572)
..... .+|.|-.-|... +...++.++..++|++.-.++.... .|
T Consensus 368 psLal-----mvpiL~R~l~eR-st~~kr~t~~IidNm~~LveDp~~l-------------------------ap----- 411 (569)
T KOG1242|consen 368 PSLAL-----MVPILKRGLAER-STSIKRKTAIIIDNMCKLVEDPKDL-------------------------AP----- 411 (569)
T ss_pred hhHHH-----HHHHHHHHHhhc-cchhhhhHHHHHHHHHHhhcCHHHH-------------------------hh-----
Confidence 11111 245555555555 7788999999999998754321110 00
Q ss_pred cCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhc
Q 008257 431 CSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDD 473 (572)
Q Consensus 431 ~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~ 473 (572)
++-+ -+|.|=.-+....|+++..+.+||+.+..+
T Consensus 412 -------fl~~--Llp~lk~~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 412 -------FLPS--LLPGLKENLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred -------hHHH--HhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 0111 334444455567899999999999888754
No 74
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.87 E-value=0.0019 Score=68.80 Aligned_cols=258 Identities=12% Similarity=0.145 Sum_probs=149.3
Q ss_pred HHHHccCCHHHHHHHHHHHHHhccCcchhHH--HHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCC-cHHHHHHcCC
Q 008257 42 LTQILEGPQETKLSLAAFLGDLALNSDVKVL--VARTVGSCLINIMKSGNMQAREAALKALNQISSCEP-SAKVLIHAGI 118 (572)
Q Consensus 42 v~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~--i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~-~~~~iv~~G~ 118 (572)
+.+|.+.++.+|+.||..++.++.--.++.. +-..-+-.|.+.|..+.+++.-.-++|+..+...-. .+..=--.|.
T Consensus 805 L~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dl 884 (1172)
T KOG0213|consen 805 LWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDL 884 (1172)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhh
Confidence 4678888999999999999888752222221 222223778899999999886555555544443211 1111113578
Q ss_pred hHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHH
Q 008257 119 LPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVG 198 (572)
Q Consensus 119 i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~ 198 (572)
+|.|..+|++.+ ..+++++...++.++..+..+.
T Consensus 885 lPrltPILknrh-----eKVqen~IdLvg~IadrgpE~v----------------------------------------- 918 (1172)
T KOG0213|consen 885 LPRLTPILKNRH-----EKVQENCIDLVGTIADRGPEYV----------------------------------------- 918 (1172)
T ss_pred cccchHhhhhhH-----HHHHHHHHHHHHHHHhcCcccC-----------------------------------------
Confidence 899999998775 6788888888888887554221
Q ss_pred ccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChH
Q 008257 199 LTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISK 278 (572)
Q Consensus 199 l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~ 278 (572)
..|+-|+ ..--|+++|.+.+.++|.+|...+.++++.-+.. ..|.-+|.+-.. ++
T Consensus 919 ---------~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq------------dVLatLlnnLkv-qe 973 (1172)
T KOG0213|consen 919 ---------SAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ------------DVLATLLNNLKV-QE 973 (1172)
T ss_pred ---------CHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH------------HHHHHHHhcchH-HH
Confidence 1233333 3345788999989999999999999887553221 223333333221 12
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHH-hCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHH
Q 008257 279 EQAAAVGLLAELPERDLGLTRQML-DEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCC 357 (572)
Q Consensus 279 ~~~~A~~~L~~L~~~~~~~~~~l~-~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~ 357 (572)
-|.....++ .+ ..+. -+|-+..|-.++.+-.+ ....++.+.+.+|+.+=.. ......+.+
T Consensus 974 Rq~RvcTtv--------aI-aIVaE~c~pFtVLPalmneYrt-------Pe~nVQnGVLkalsf~Fey--igemskdYi- 1034 (1172)
T KOG0213|consen 974 RQNRVCTTV--------AI-AIVAETCGPFTVLPALMNEYRT-------PEANVQNGVLKALSFMFEY--IGEMSKDYI- 1034 (1172)
T ss_pred HHhchhhhh--------hh-hhhhhhcCchhhhHHHHhhccC-------chhHHHHhHHHHHHHHHHH--HHHHhhhHH-
Confidence 221111110 00 1111 12444445555544211 2344566777777654311 011122222
Q ss_pred HcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 008257 358 EHNLAALFIELLQSNGLDKVQMVSATALENLSLE 391 (572)
Q Consensus 358 ~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~ 391 (572)
+-+.|.|-+-|.+. +..-+.-|+.++.+++.+
T Consensus 1035 -yav~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1035 -YAVTPLLEDALMDR-DLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred -HHhhHHHHHhhccc-cHHHHHHHHHHHHHHhcC
Confidence 23568888888887 777788888888888753
No 75
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.87 E-value=0.013 Score=59.87 Aligned_cols=188 Identities=21% Similarity=0.272 Sum_probs=135.7
Q ss_pred CCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 008257 36 GRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIH 115 (572)
Q Consensus 36 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~ 115 (572)
-.++.+++.+.+.+..+|..++..++.+.. +..+|.|.++|.+.++.++..|+.+|..+-.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~---------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~---------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS---------EEAVPLLRELLSDEDPRVRDAAADALGELGD---------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch---------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------
Confidence 357888888888888889888888663332 1234999999999999999999998777542
Q ss_pred cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCCh---------
Q 008257 116 AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGP--------- 186 (572)
Q Consensus 116 ~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~--------- 186 (572)
.-.+|+|+++|... .+..++..|+++|+.+-. +..+.+++..+.....
T Consensus 104 ~~a~~~li~~l~~d----~~~~vR~~aa~aL~~~~~-------------------~~a~~~l~~~l~~~~~~~a~~~~~~ 160 (335)
T COG1413 104 PEAVPPLVELLEND----ENEGVRAAAARALGKLGD-------------------ERALDPLLEALQDEDSGSAAAALDA 160 (335)
T ss_pred hhHHHHHHHHHHcC----CcHhHHHHHHHHHHhcCc-------------------hhhhHHHHHHhccchhhhhhhhccc
Confidence 24789999999851 347899999999998832 3458888888876552
Q ss_pred ---hHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCCh
Q 008257 187 ---TIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQL 263 (572)
Q Consensus 187 ---~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l 263 (572)
.++..++.+|..+ .+...++.+..++.+.+..+|..|..+|..+..+. . ...
T Consensus 161 ~~~~~r~~a~~~l~~~--------------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~-~~~ 215 (335)
T COG1413 161 ALLDVRAAAAEALGEL--------------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------V-EAA 215 (335)
T ss_pred hHHHHHHHHHHHHHHc--------------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------h-hHH
Confidence 2333444433322 23446888889998888889999998888776552 0 244
Q ss_pred hhHHhhhccCCCChHHHHHHHHHHhcCCC
Q 008257 264 GSLIRVISENVGISKEQAAAVGLLAELPE 292 (572)
Q Consensus 264 ~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~ 292 (572)
+.+...+..++. .++..++..++.+..
T Consensus 216 ~~l~~~~~~~~~--~vr~~~~~~l~~~~~ 242 (335)
T COG1413 216 DLLVKALSDESL--EVRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHhcCCCH--HHHHHHHHHhcccCc
Confidence 667777777774 788888888877644
No 76
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.0066 Score=64.78 Aligned_cols=220 Identities=14% Similarity=0.211 Sum_probs=150.0
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCh
Q 008257 171 EDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGH 250 (572)
Q Consensus 171 ~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~ 250 (572)
.+.-+.++.||+++.|.++.+|+.+++.+.-.... .+| -.+|.|++-|+.+|+.|+..|+..+..|++.++.
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe--Alr------~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE--ALR------PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH--hHh------hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 44667789999999999999999999988765321 233 4799999999999999999999999999987665
Q ss_pred hHHHHHhcccCChhhHHhhhccCC-CChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchh
Q 008257 251 ELADALRGAVGQLGSLIRVISENV-GISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVT 329 (572)
Q Consensus 251 ~~~~~i~~~~g~l~~Lv~lL~~~~-~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~ 329 (572)
.. +. .-|.+.++|.+.+ .|.-++ -+.+.++|+--+|..... .+|+|.+++.+. ...
T Consensus 215 ny---L~----LAP~ffkllttSsNNWmLIK--iiKLF~aLtplEPRLgKK-----Lieplt~li~sT---------~Am 271 (877)
T KOG1059|consen 215 NY---LQ----LAPLFYKLLVTSSNNWVLIK--LLKLFAALTPLEPRLGKK-----LIEPITELMEST---------VAM 271 (877)
T ss_pred cc---cc----ccHHHHHHHhccCCCeehHH--HHHHHhhccccCchhhhh-----hhhHHHHHHHhh---------HHH
Confidence 52 32 2377888886554 343343 366777887778887664 468999998762 122
Q ss_pred hHHHHHHHHHH--HHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCC
Q 008257 330 PFLEGLLSVLA--RVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFC 407 (572)
Q Consensus 330 ~~~e~a~~aL~--~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~ 407 (572)
++.-.++..+. ++..+..++....+.+ +.-|-.++.+. ++..|.-+.-|+.-+....+..
T Consensus 272 SLlYECvNTVVa~s~s~g~~d~~asiqLC-----vqKLr~fieds-DqNLKYlgLlam~KI~ktHp~~------------ 333 (877)
T KOG1059|consen 272 SLLYECVNTVVAVSMSSGMSDHSASIQLC-----VQKLRIFIEDS-DQNLKYLGLLAMSKILKTHPKA------------ 333 (877)
T ss_pred HHHHHHHHHheeehhccCCCCcHHHHHHH-----HHHHhhhhhcC-CccHHHHHHHHHHHHhhhCHHH------------
Confidence 22222332221 2222211233333332 34455566777 8899998888887775432211
Q ss_pred ccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q 008257 408 ASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVID 472 (572)
Q Consensus 408 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~ 472 (572)
+.. --..++++|+..|+.++..|+..|+.++.
T Consensus 334 -------------------------------Vqa--~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 334 -------------------------------VQA--HKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred -------------------------------HHH--hHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 111 22467899999999999999999999985
No 77
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.80 E-value=0.00013 Score=58.58 Aligned_cols=87 Identities=24% Similarity=0.332 Sum_probs=69.3
Q ss_pred hHHHHHHh-ccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhh
Q 008257 362 AALFIELL-QSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLL 440 (572)
Q Consensus 362 i~~Lv~lL-~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~ 440 (572)
||.|++.| +++ ++.+|..|+.+|+.+-
T Consensus 1 i~~L~~~l~~~~-~~~vr~~a~~~L~~~~--------------------------------------------------- 28 (88)
T PF13646_consen 1 IPALLQLLQNDP-DPQVRAEAARALGELG--------------------------------------------------- 28 (88)
T ss_dssp HHHHHHHHHTSS-SHHHHHHHHHHHHCCT---------------------------------------------------
T ss_pred CHHHHHHHhcCC-CHHHHHHHHHHHHHcC---------------------------------------------------
Confidence 68899999 666 9999999999987431
Q ss_pred hccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHH
Q 008257 441 EGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVE 514 (572)
Q Consensus 441 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~ 514 (572)
+..+++.|+++++++++.|+..|+.+|+.+-. ..+++.|.+++.++.+..++..|+.+|.
T Consensus 29 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 29 DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 22479999999999999999999999998742 1267889999964556677888888763
No 78
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.79 E-value=0.076 Score=57.19 Aligned_cols=251 Identities=13% Similarity=0.170 Sum_probs=146.6
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHcCC---CCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCC---
Q 008257 219 TISLVQFVEAPQNDLRLASIELIQNLSP---HMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPE--- 292 (572)
Q Consensus 219 i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~---~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~--- 292 (572)
+...+..|+++.+.+|..|+.+++.++. ..+++ +.+..- | -.|.+-|....+ ++.-..+++|..+..
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee--~~m~~l-G--vvLyEylgeeyp--EvLgsILgAikaI~nvig 873 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEE--KLMGHL-G--VVLYEYLGEEYP--EVLGSILGAIKAIVNVIG 873 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHH--HHHHHh-h--HHHHHhcCcccH--HHHHHHHHHHHHHHHhcc
Confidence 3345567889999999999999998873 11222 123322 3 357777777664 554444444433322
Q ss_pred ---CcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCCh---HHHHHHHHcCchHHHH
Q 008257 293 ---RDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEP---DAIALCCEHNLAALFI 366 (572)
Q Consensus 293 ---~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~---~~~~~i~~~g~i~~Lv 366 (572)
-.+.+ .|.+|.|.-+|++ -++.++++++..+..++....+-. ++.+.+. -|+
T Consensus 874 m~km~pPi------~dllPrltPILkn----------rheKVqen~IdLvg~IadrgpE~v~aREWMRIcf------eLl 931 (1172)
T KOG0213|consen 874 MTKMTPPI------KDLLPRLTPILKN----------RHEKVQENCIDLVGTIADRGPEYVSAREWMRICF------ELL 931 (1172)
T ss_pred ccccCCCh------hhhcccchHhhhh----------hHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHH------HHH
Confidence 11122 2778999999986 256789999999888885311111 2333332 378
Q ss_pred HHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchH
Q 008257 367 ELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVE 446 (572)
Q Consensus 367 ~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~ 446 (572)
++|+++ .-.+++.|...++.++.-.+ -...+.
T Consensus 932 elLkah-kK~iRRaa~nTfG~IakaIG-----------------------------------------------PqdVLa 963 (1172)
T KOG0213|consen 932 ELLKAH-KKEIRRAAVNTFGYIAKAIG-----------------------------------------------PQDVLA 963 (1172)
T ss_pred HHHHHH-HHHHHHHHHhhhhHHHHhcC-----------------------------------------------HHHHHH
Confidence 999998 89999999999888764211 112333
Q ss_pred HHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhc--CCHHHHHHHHHHHHHHHcc-hhhh
Q 008257 447 KLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEK--RTENLQRRAVWVVERILRT-DDIA 523 (572)
Q Consensus 447 ~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~~~~~~a~~~l~~l~~~-~~~~ 523 (572)
.|++=|...+...+.-..-|++..+ .-||-+..|-.++++. ++-.+|...+.++.-+|.- .+..
T Consensus 964 tLlnnLkvqeRq~RvcTtvaIaIVa-------------E~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigems 1030 (1172)
T KOG0213|consen 964 TLLNNLKVQERQNRVCTTVAIAIVA-------------ETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMS 1030 (1172)
T ss_pred HHHhcchHHHHHhchhhhhhhhhhh-------------hhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHh
Confidence 4444333322211111111122111 1234444455555443 3445677777777767643 4444
Q ss_pred hhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhccc
Q 008257 524 YEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKI 561 (572)
Q Consensus 524 ~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~ 561 (572)
..+.- .+.+.|-+.|-+.|+.-|+.|+.++.||+--
T Consensus 1031 kdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1031 KDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred hhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 44443 1224677888899999999999999998763
No 79
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.021 Score=60.47 Aligned_cols=404 Identities=15% Similarity=0.133 Sum_probs=215.8
Q ss_pred cCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHH-HHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHH
Q 008257 47 EGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQ-AREAALKALNQISSCEPSAKVLIHAGILPPLVK 124 (572)
Q Consensus 47 ~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~-~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~ 124 (572)
+....++-+++.+...... ..+.+.+. .. |..-+.|++.... .+++-.---..++.+-+..+. .-.-.+..|..
T Consensus 28 d~~~~v~~~ml~a~~~~~~-~~~~~~v~--~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~-~~~~~~~~~~~ 103 (569)
T KOG1242|consen 28 DRRIDVRGNMLEAGEAAIN-QHGDQNVL--NLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDP-RPISIIEILLE 103 (569)
T ss_pred CcchhhHHhHHHHHHHHHH-hhhHHHHH--HHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCc-chhHHHHHHHH
Confidence 3445566666666543222 11222211 12 5555566654433 333333322333332111000 01123445555
Q ss_pred HHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCC
Q 008257 125 DLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPT 204 (572)
Q Consensus 125 lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~ 204 (572)
-++.+ +..+|+..+.+|.-+..... ......+.+.+.+++..++..-+..+.+.+..+..+.-
T Consensus 104 ~~~tp-----s~~~q~~~~~~l~~~~~~~~------------~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~ 166 (569)
T KOG1242|consen 104 ELDTP-----SKSVQRAVSTCLPPLVVLSK------------GLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG 166 (569)
T ss_pred hcCCC-----cHHHHHHHHHHhhhHHHHhh------------ccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH
Confidence 55543 46777777777776654322 12335578888999998888889999999999988753
Q ss_pred ccHHHHHHHHhcCChHHHHHHhcCCCHHH-HHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC-ChHHHHH
Q 008257 205 TVLSVVSAIKSSGATISLVQFVEAPQNDL-RLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG-ISKEQAA 282 (572)
Q Consensus 205 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v-~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~-~~~~~~~ 282 (572)
...+.+.+.+..|-....+..... ++.+.-+......+.+.. .+ ++.++.|-.+|.+-.+ ..++|.+
T Consensus 167 -----i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~-----~E-Pyiv~~lp~il~~~~d~~~~Vr~A 235 (569)
T KOG1242|consen 167 -----IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPP-----FE-PYIVPILPSILTNFGDKINKVREA 235 (569)
T ss_pred -----HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCC-----CC-chHHhhHHHHHHHhhccchhhhHH
Confidence 355667888999999988877543 443444443333322211 11 1334444444433211 1266665
Q ss_pred HHHHHhcC---CCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHc
Q 008257 283 AVGLLAEL---PERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEH 359 (572)
Q Consensus 283 A~~~L~~L---~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~ 359 (572)
|..+...+ .. .... + -.+|.++.-+...+ -+ .+..++..|..++. ....+-.....
T Consensus 236 a~~a~kai~~~~~-~~aV-K-----~llpsll~~l~~~k---Wr-------tK~aslellg~m~~----~ap~qLs~~lp 294 (569)
T KOG1242|consen 236 AVEAAKAIMRCLS-AYAV-K-----LLLPSLLGSLLEAK---WR-------TKMASLELLGAMAD----CAPKQLSLCLP 294 (569)
T ss_pred HHHHHHHHHHhcC-cchh-h-----HhhhhhHHHHHHHh---hh-------hHHHHHHHHHHHHH----hchHHHHHHHh
Confidence 55543222 11 1111 1 12344444333211 01 14455666655552 23333445667
Q ss_pred CchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhh
Q 008257 360 NLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCL 439 (572)
Q Consensus 360 g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l 439 (572)
.++|.+.+.|.+. .+++|+.+-.+|-.+..-..+.. |
T Consensus 295 ~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~d------------------------------------------I 331 (569)
T KOG1242|consen 295 DLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPD------------------------------------------I 331 (569)
T ss_pred HhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHH------------------------------------------H
Confidence 8999999999998 99999999999987764322110 1
Q ss_pred hhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHh---hcCCHHHHHHHHHHHHHH
Q 008257 440 LEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLL---EKRTENLQRRAVWVVERI 516 (572)
Q Consensus 440 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~---~~~~~~~~~~a~~~l~~l 516 (572)
.. .+|.|++.+..++..+.+ ++..|+.=. . +. -+++-.+..++.+|+ ...+..+++.++.++.++
T Consensus 332 ~~--~ip~Lld~l~dp~~~~~e-~~~~L~~tt---F-----V~-~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm 399 (569)
T KOG1242|consen 332 QK--IIPTLLDALADPSCYTPE-CLDSLGATT---F-----VA-EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNM 399 (569)
T ss_pred HH--HHHHHHHHhcCcccchHH-HHHhhccee---e-----ee-eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHH
Confidence 11 667888888876644433 233332111 0 00 112223333444442 255677889999999999
Q ss_pred Hcchhhh---hhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257 517 LRTDDIA---YEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK 560 (572)
Q Consensus 517 ~~~~~~~---~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~ 560 (572)
+.--+.. ..|-. .+.+.|-..+....|++|..|++||.-+-+
T Consensus 400 ~~LveDp~~lapfl~--~Llp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 400 CKLVEDPKDLAPFLP--SLLPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred HHhhcCHHHHhhhHH--HHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 8542222 22222 222356666677889999999999954433
No 80
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.72 E-value=0.0039 Score=65.24 Aligned_cols=256 Identities=14% Similarity=0.185 Sum_probs=152.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhccCcch---hHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHH-HHHHc
Q 008257 41 LLTQILEGPQETKLSLAAFLGDLALNSDV---KVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAK-VLIHA 116 (572)
Q Consensus 41 Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~---k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~-~iv~~ 116 (572)
.+.+|++.++.+|+.||...+.++.--.+ .+.+.. -+-.|.+-|..+.+++.-.-++|+..+.+....+. +=--.
T Consensus 609 iL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~k-lg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~ 687 (975)
T COG5181 609 ILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAK-LGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPIS 687 (975)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHH-HhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchh
Confidence 35678899999999999988877641111 122222 23678888999999987776666666665332221 11146
Q ss_pred CChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHH
Q 008257 117 GILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVL 196 (572)
Q Consensus 117 G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL 196 (572)
|.+|.|...|++.+ ..++.+....++.++..++.+.
T Consensus 688 ~ilP~ltPILrnkh-----~Kv~~nti~lvg~I~~~~peyi--------------------------------------- 723 (975)
T COG5181 688 GILPSLTPILRNKH-----QKVVANTIALVGTICMNSPEYI--------------------------------------- 723 (975)
T ss_pred hccccccHhhhhhh-----HHHhhhHHHHHHHHHhcCcccC---------------------------------------
Confidence 89999999998765 5677777777777776543211
Q ss_pred HHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCC
Q 008257 197 VGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGI 276 (572)
Q Consensus 197 ~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~ 276 (572)
..|+-|+ .---|+++|.+.+.++|++|...+.++++.-+.. ..|.-+|.+-..
T Consensus 724 -----------~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq------------dvL~~LlnnLkv- 776 (975)
T COG5181 724 -----------GVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ------------DVLDILLNNLKV- 776 (975)
T ss_pred -----------CHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH------------HHHHHHHhcchH-
Confidence 1233333 2345788999999999999999999887553221 223333333221
Q ss_pred hH--HHHHHHHHHhcCCCCcHHHHHHHHh-CCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHH
Q 008257 277 SK--EQAAAVGLLAELPERDLGLTRQMLD-EGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAI 353 (572)
Q Consensus 277 ~~--~~~~A~~~L~~L~~~~~~~~~~l~~-~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~ 353 (572)
++ .+....-+|+ .+.+ +|-+..|-.++.+-.+ ....++.+.+.+++.+=.. .....+
T Consensus 777 qeRq~RvctsvaI~-----------iVae~cgpfsVlP~lm~dY~T-------Pe~nVQnGvLkam~fmFey--ig~~s~ 836 (975)
T COG5181 777 QERQQRVCTSVAIS-----------IVAEYCGPFSVLPTLMSDYET-------PEANVQNGVLKAMCFMFEY--IGQASL 836 (975)
T ss_pred HHHHhhhhhhhhhh-----------hhHhhcCchhhHHHHHhcccC-------chhHHHHhHHHHHHHHHHH--HHHHHH
Confidence 11 1211111111 1111 2445555555654221 2344567777777654311 012222
Q ss_pred HHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 008257 354 ALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLE 391 (572)
Q Consensus 354 ~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~ 391 (572)
+.+ .-+.|.|-+-|.+. ++.-+..|+..+.+++.+
T Consensus 837 dYv--y~itPlleDAltDr-D~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 837 DYV--YSITPLLEDALTDR-DPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred HHH--HHhhHHHHhhhccc-chHHHHHHHHHHHHHhcC
Confidence 332 23568888888887 777788888888888753
No 81
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.67 E-value=0.0002 Score=57.38 Aligned_cols=87 Identities=25% Similarity=0.315 Sum_probs=69.6
Q ss_pred cHHHHHHH-ccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHc
Q 008257 38 LQPLLTQI-LEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHA 116 (572)
Q Consensus 38 i~~Lv~~L-~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~ 116 (572)
|+.|++.| +++++.+|..++.+|+.+... ...|.|+++++++++.+|..|+++|..+- ..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~~ 61 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP---------EAIPALIELLKDEDPMVRRAAARALGRIG----------DP 61 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------CH
Confidence 57899989 788899999999999843211 22499999999999999999999999873 34
Q ss_pred CChHHHHHHHhccCCCCCCcchHHHHHHHHH
Q 008257 117 GILPPLVKDLFTVGSNHLPMRLKEVSATILA 147 (572)
Q Consensus 117 G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~ 147 (572)
.+++.|.+++.+. .+..+|..|+.+|+
T Consensus 62 ~~~~~L~~~l~~~----~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDD----DDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-----SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC----CcHHHHHHHHhhcC
Confidence 4899999999763 23667888888875
No 82
>PF05536 Neurochondrin: Neurochondrin
Probab=97.62 E-value=0.0071 Score=65.47 Aligned_cols=202 Identities=10% Similarity=0.049 Sum_probs=138.2
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC-------CHHHHHHHHHHHHHc
Q 008257 172 DIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP-------QNDLRLASIELIQNL 244 (572)
Q Consensus 172 ~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~v~~~a~~~L~~L 244 (572)
..+...+++|+..+++-+.-++-.+-.++...+.....++.+.++=|...|-+||+.+ ....+.-|+.+|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3577888999988866666777777788776543334556788898999999999873 346788899999999
Q ss_pred CCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCC
Q 008257 245 SPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRG 324 (572)
Q Consensus 245 s~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~ 324 (572)
+..+.-.....+. +.||.|++++.+.++ ......+..+|..++. .++-.+.+++.|+++.|...+.+.
T Consensus 85 ~~~~~~a~~~~~~---~~IP~Lle~l~~~s~-~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~~------- 152 (543)
T PF05536_consen 85 CRDPELASSPQMV---SRIPLLLEILSSSSD-LETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPNQ------- 152 (543)
T ss_pred cCChhhhcCHHHH---HHHHHHHHHHHcCCc-hhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHhC-------
Confidence 9742111112344 469999999988875 3677888999999996 556668999999999999999862
Q ss_pred CcchhhHHHHHHHHHHHHhccCCCChHHHH-H-HHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 008257 325 SRFVTPFLEGLLSVLARVTFVLSDEPDAIA-L-CCEHNLAALFIELLQSNGLDKVQMVSATALENLSLES 392 (572)
Q Consensus 325 ~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~-~-i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~ 392 (572)
...+|.++.+|.++... ...+... . -.-..+++.+-...... ....|.....-|..+-...
T Consensus 153 ----~~~~E~Al~lL~~Lls~--~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 153 ----SFQMEIALNLLLNLLSR--LGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred ----cchHHHHHHHHHHHHHh--cchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcC
Confidence 22378888888887743 1211110 0 00113345555555554 4556667777777765444
No 83
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.071 Score=57.83 Aligned_cols=208 Identities=13% Similarity=0.138 Sum_probs=121.8
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS 158 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~ 158 (572)
.-|..||+|.....+..|.+-+..+-....+.. ...|..|+...+.+ .++|...---|..-|.. .+.
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS-----~~Fp~VVKNVaskn-----~EVKkLVyvYLlrYAEe---qpd 104 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVS-----LLFPAVVKNVASKN-----IEVKKLVYVYLLRYAEE---QPD 104 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHH-----HHHHHHHHHhhccC-----HHHHHHHHHHHHHHhhc---CCC
Confidence 678999999887777777766666555555432 34677777776542 67776443333333332 222
Q ss_pred cccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHH
Q 008257 159 ITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASI 238 (572)
Q Consensus 159 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~ 238 (572)
.. + -.|..+-+-|+.+++.++..|+|+|..+--.. +-.-.+-.+-+......+.||..|+
T Consensus 105 LA-------L---LSIntfQk~L~DpN~LiRasALRvlSsIRvp~----------IaPI~llAIk~~~~D~s~yVRk~AA 164 (968)
T KOG1060|consen 105 LA-------L---LSINTFQKALKDPNQLIRASALRVLSSIRVPM----------IAPIMLLAIKKAVTDPSPYVRKTAA 164 (968)
T ss_pred ce-------e---eeHHHHHhhhcCCcHHHHHHHHHHHHhcchhh----------HHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 11 1 13777888888999999999999887663221 1000111222344566789999999
Q ss_pred HHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhc
Q 008257 239 ELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQ 318 (572)
Q Consensus 239 ~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~ 318 (572)
-++-.|=+-+.++- .++. ..+-.+|...++ .+--.|+.+...++- +.-+.+. +-...|.++|.+
T Consensus 165 ~AIpKLYsLd~e~k-~qL~------e~I~~LLaD~sp--lVvgsAv~AF~evCP---erldLIH--knyrklC~ll~d-- 228 (968)
T KOG1060|consen 165 HAIPKLYSLDPEQK-DQLE------EVIKKLLADRSP--LVVGSAVMAFEEVCP---ERLDLIH--KNYRKLCRLLPD-- 228 (968)
T ss_pred HhhHHHhcCChhhH-HHHH------HHHHHHhcCCCC--cchhHHHHHHHHhch---hHHHHhh--HHHHHHHhhccc--
Confidence 99887754433332 1222 223333444443 566667777766643 2223332 446677777765
Q ss_pred cCCCCCCcchhhHHHHHHHHHHHHh
Q 008257 319 LGETRGSRFVTPFLEGLLSVLARVT 343 (572)
Q Consensus 319 ~~~~~~~~~~~~~~e~a~~aL~~l~ 343 (572)
.++|-+-.++..|.+.+
T Consensus 229 --------vdeWgQvvlI~mL~RYA 245 (968)
T KOG1060|consen 229 --------VDEWGQVVLINMLTRYA 245 (968)
T ss_pred --------hhhhhHHHHHHHHHHHH
Confidence 34565666777777665
No 84
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.015 Score=56.22 Aligned_cols=297 Identities=18% Similarity=0.167 Sum_probs=175.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHH
Q 008257 174 VHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELA 253 (572)
Q Consensus 174 i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~ 253 (572)
...+++++.+.+|.++..|+.-+.+++..+. .... -.+...++.+..|+...++ -+.|+.+|.|++.. ..++
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~--~~~~--~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~--~~l~ 76 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRGL--QSLS--KYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK--EELR 76 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccch--hhhc--cchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh--HHHH
Confidence 3457889999999999999999999887621 0111 0134467788889877766 66788899999865 2455
Q ss_pred HHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhC-----CChHHHHHHHhhhccCCCCCCcch
Q 008257 254 DALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDE-----GAFGLIFSRVKSIQLGETRGSRFV 328 (572)
Q Consensus 254 ~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~-----g~l~~Lv~lL~~~~~~~~~~~~~~ 328 (572)
+.+... .+..++.++.++.. ..-.....+++|++..+......+..- .++..++....+... +.
T Consensus 77 ~~ll~~--~~k~l~~~~~~p~~--~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~-------n~ 145 (353)
T KOG2973|consen 77 KKLLQD--LLKVLMDMLTDPQS--PLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSY-------NA 145 (353)
T ss_pred HHHHHH--HHHHHHHHhcCccc--chHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCccc-------cc
Confidence 555543 67788888888864 556667788999999665554333211 345555544433211 10
Q ss_pred hhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHH--HHHHhccCCcHHHH-HHHHHHHHHhhhhccccCCCCCCCCCC
Q 008257 329 TPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAAL--FIELLQSNGLDKVQ-MVSATALENLSLESKNLTKLPELPPSG 405 (572)
Q Consensus 329 ~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~--Lv~lL~~~~~~~vk-~~Aa~aL~~ls~~~~~~~~~~~~~~~~ 405 (572)
-.-....+-.+.+++. .+.-|+.+.+...+|. |..+ .+. +..+| .-.+..|.|.+.....+...... .
T Consensus 146 ~a~f~ylA~vf~nls~----~~~gR~l~~~~k~~p~~kll~f-t~~-~s~vRr~GvagtlkN~cFd~~~h~~lL~e-~-- 216 (353)
T KOG2973|consen 146 YAEFHYLAPVFANLSQ----FEAGRKLLLEPKRFPDQKLLPF-TSE-DSQVRRGGVAGTLKNCCFDAKLHEVLLDE-S-- 216 (353)
T ss_pred ccchhHHHHHHHHHhh----hhhhhhHhcchhhhhHhhhhcc-ccc-chhhhccchHHHHHhhhccchhHHHHhcc-h--
Confidence 1114567777778873 5667777766664443 2222 223 44444 45666788877666554433221 1
Q ss_pred CCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhc-----CCCHhHHHHHHHHHHHhhhcCccchhh
Q 008257 406 FCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLD-----HTNEKVVEASLAALSTVIDDGVDIEQG 480 (572)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~-----~~~~~v~~~A~~aL~~l~~~~~~~~~~ 480 (572)
.++|+-+ ..-+++.+ .|-=-+.-..|+=+++|. .+++.+...-+.+|.-|+... .+
T Consensus 217 --~~lLp~i------------LlPlagpe-e~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~----~G 277 (353)
T KOG2973|consen 217 --INLLPAI------------LLPLAGPE-ELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR----AG 277 (353)
T ss_pred --HHHHHHH------------HhhcCCcc-ccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh----Hh
Confidence 1112111 11111111 110012235566668885 578899999999999998753 56
Q ss_pred HHHHHhcCChHHHHHHH-hhcCCHHHHHHHHHHHHHHHc
Q 008257 481 VMVLCEAQGIKPILDVL-LEKRTENLQRRAVWVVERILR 518 (572)
Q Consensus 481 ~~~i~~~g~i~~L~~lL-~~~~~~~~~~~a~~~l~~l~~ 518 (572)
.+.+-+- |+.++++-+ ++..++++.+..-.+..-+.+
T Consensus 278 Re~lR~k-gvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 278 REVLRSK-GVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred HHHHHhc-CchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 6666555 555555555 334467777665555554443
No 85
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.54 E-value=0.0056 Score=64.76 Aligned_cols=243 Identities=18% Similarity=0.130 Sum_probs=159.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhcc-CcchHHHHHHcCCcHHHHHHHccC-----CHHHHHHHHHHHHHhcc-CcchhHHHHh
Q 008257 3 SSKSENLLTVEKAEKTLANLEK-CENNVRQMAENGRLQPLLTQILEG-----PQETKLSLAAFLGDLAL-NSDVKVLVAR 75 (572)
Q Consensus 3 ~~~s~~~~~~~~A~~~L~~L~~-~~~n~~~i~~~g~i~~Lv~~L~~~-----~~~~~~~aa~~L~~l~~-~~~~k~~i~~ 75 (572)
+..+.++.+...|.++|+|+-. ++..+..+++.|+.+.++.+|+.. +.+.+....+.|.-+.. ..+.+..+.+
T Consensus 40 ~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~ 119 (446)
T PF10165_consen 40 EFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIE 119 (446)
T ss_pred cccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 3567888999999999999987 677788899999999999999987 78888888888776544 5566655554
Q ss_pred h-hH-HHHHHhccc-----------------CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhcc---C-CC
Q 008257 76 T-VG-SCLINIMKS-----------------GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTV---G-SN 132 (572)
Q Consensus 76 ~-g~-~~Lv~lL~s-----------------~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~---~-~~ 132 (572)
. ++ ..|+..|.. .+.+....+++.+.|+..+.+....--+.+.++.|+.+|..- . .+
T Consensus 120 e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~ 199 (446)
T PF10165_consen 120 EHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSS 199 (446)
T ss_pred HhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCC
Confidence 4 44 777765521 133446789999999997654432224667788888876533 1 12
Q ss_pred CCCcchHHHHHHHHHHHHhcCCCC---CccccCCCccccchhhhHHHHHHHHhc-----CC---hhHHHHHHHHHHHccC
Q 008257 133 HLPMRLKEVSATILANVVNSGHDF---DSITVGPDNQTLVSEDIVHNLLHLISN-----TG---PTIECKLLQVLVGLTS 201 (572)
Q Consensus 133 ~~~~~~~~~aa~~L~nla~~~~~~---~~~~~~~~~~~l~~~~~i~~Lv~lL~~-----~~---~~~q~~a~~aL~~l~~ 201 (572)
.........+..+|.|+--..... .....+..........++..|+.+|.. .. .+.-...+.+|..++.
T Consensus 200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~ 279 (446)
T PF10165_consen 200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR 279 (446)
T ss_pred CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence 233567788888888882111000 000000000012334578888888862 11 1333455667777776
Q ss_pred CCCccHHHHHHHHh---------------cCChH-HHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 008257 202 SPTTVLSVVSAIKS---------------SGATI-SLVQFVEAPQNDLRLASIELIQNLSPHM 248 (572)
Q Consensus 202 ~~~~~~~~~~~i~~---------------~g~i~-~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~ 248 (572)
.. +.+|+.++. .+.++ .|++++.+..+.++..+...|+.||+.+
T Consensus 280 ~~---~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 280 AA---REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred hc---HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 54 245666553 23333 8999999988999999999999998664
No 86
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.023 Score=55.07 Aligned_cols=277 Identities=14% Similarity=0.145 Sum_probs=161.1
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHH-HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCC
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI-HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFD 157 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv-~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~ 157 (572)
--+|++|.+.+|.+|..|+.-|..++.. ..+.... +.-.++.+.+++.... + -+.|+.+|.|++....- .
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~-----~--~~~a~~alVnlsq~~~l-~ 76 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLD-----P--AEPAATALVNLSQKEEL-R 76 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCcc-----c--ccHHHHHHHHHHhhHHH-H
Confidence 3578899999999999999999998876 3332222 4556788888886531 2 56899999999874310 0
Q ss_pred ccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHH--h---cCChHHHHH-HhcCCCH
Q 008257 158 SITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIK--S---SGATISLVQ-FVEAPQN 231 (572)
Q Consensus 158 ~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~--~---~g~i~~Lv~-lL~~~~~ 231 (572)
+.+... .+..++.++.++-...-.-.+..|.|+++.... +...+. . ..++.-|+. +++.+..
T Consensus 77 --------~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~---~~~ll~~~~~~~~~~lm~l~~~~~d~~~n 144 (353)
T KOG2973|consen 77 --------KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDE---VAALLTNLTEKKDSGLMRLARAFCDKSYN 144 (353)
T ss_pred --------HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchH---HHHHHHhcccccccchHHHHHHHhCcccc
Confidence 122222 566666776666566667778888899887643 222211 1 134444444 4443322
Q ss_pred --HHHHHHHHHHHHcCCCC-ChhHHHHHhcccCC-hhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhC--C
Q 008257 232 --DLRLASIELIQNLSPHM-GHELADALRGAVGQ-LGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDE--G 305 (572)
Q Consensus 232 --~v~~~a~~~L~~Ls~~~-~~~~~~~i~~~~g~-l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~--g 305 (572)
.--.+-+-.+.+|++.. ++. .+....-. ...|+.+ .+.++ .--+.-.+++|.|++.. ..+...+.+. +
T Consensus 145 ~~a~f~ylA~vf~nls~~~~gR~---l~~~~k~~p~~kll~f-t~~~s-~vRr~GvagtlkN~cFd-~~~h~~lL~e~~~ 218 (353)
T KOG2973|consen 145 AYAEFHYLAPVFANLSQFEAGRK---LLLEPKRFPDQKLLPF-TSEDS-QVRRGGVAGTLKNCCFD-AKLHEVLLDESIN 218 (353)
T ss_pred cccchhHHHHHHHHHhhhhhhhh---HhcchhhhhHhhhhcc-cccch-hhhccchHHHHHhhhcc-chhHHHHhcchHH
Confidence 22345566788888542 222 22222011 2233333 33332 23455678899999984 4444556553 3
Q ss_pred ChHHHHHHHhhhccCC----------------CCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHh
Q 008257 306 AFGLIFSRVKSIQLGE----------------TRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELL 369 (572)
Q Consensus 306 ~l~~Lv~lL~~~~~~~----------------~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL 369 (572)
.+|.|+-=|.+.+.-+ .+...+++.++...+.+|..++. ...-|+.+++.|+.|.+-++=
T Consensus 219 lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca----T~~GRe~lR~kgvYpilRElh 294 (353)
T KOG2973|consen 219 LLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA----TRAGREVLRSKGVYPILRELH 294 (353)
T ss_pred HHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh----hhHhHHHHHhcCchHHHHHHh
Confidence 4555544443322100 01122467788889999999984 577789999999977765554
Q ss_pred ccCCcHHHHHHHHHHHHH
Q 008257 370 QSNGLDKVQMVSATALEN 387 (572)
Q Consensus 370 ~~~~~~~vk~~Aa~aL~~ 387 (572)
+...++++. .++.-+.+
T Consensus 295 k~e~ded~~-~ace~vvq 311 (353)
T KOG2973|consen 295 KWEEDEDIR-EACEQVVQ 311 (353)
T ss_pred cCCCcHHHH-HHHHHHHH
Confidence 444344444 34443433
No 87
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.49 E-value=0.00026 Score=47.55 Aligned_cols=39 Identities=28% Similarity=0.262 Sum_probs=35.4
Q ss_pred hHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 008257 350 PDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLS 389 (572)
Q Consensus 350 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls 389 (572)
++.++.+++.|++|+|+++|.++ ++.+++.++++|.|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHc
Confidence 34777899999999999999987 9999999999999986
No 88
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.48 E-value=0.036 Score=56.99 Aligned_cols=333 Identities=17% Similarity=0.134 Sum_probs=194.1
Q ss_pred HHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccC--CHHHHHH
Q 008257 19 LANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSG--NMQAREA 95 (572)
Q Consensus 19 L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~--~~~~~~~ 95 (572)
..-+...+.-+..+.-.-..+.+..++-+.+.+++..+-..+..+..+.+.-..+.+..+ -.++.-|..+ +...++.
T Consensus 8 v~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~Q 87 (371)
T PF14664_consen 8 VDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQ 87 (371)
T ss_pred HHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHH
Confidence 333344555555554444555555555555577777777777766677777777777788 6667777653 4567899
Q ss_pred HHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHH
Q 008257 96 ALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVH 175 (572)
Q Consensus 96 A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~ 175 (572)
|++.++.+...+...+. +-.|.+..++.+.... +..++..|.++|+.++-.++ ..+...|++.
T Consensus 88 ALkliR~~l~~~~~~~~-~~~~vvralvaiae~~-----~D~lr~~cletL~El~l~~P-----------~lv~~~gG~~ 150 (371)
T PF14664_consen 88 ALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHE-----DDRLRRICLETLCELALLNP-----------ELVAECGGIR 150 (371)
T ss_pred HHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCC-----chHHHHHHHHHHHHHHhhCH-----------HHHHHcCCHH
Confidence 99999999876444333 3668889999988764 26799999999999987653 2456678899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHh-cC------CCH--HHHHHHHHHHHHcC-
Q 008257 176 NLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFV-EA------PQN--DLRLASIELIQNLS- 245 (572)
Q Consensus 176 ~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL-~~------~~~--~v~~~a~~~L~~Ls- 245 (572)
.|++.+-.+..++.+..+.++..+-..+.. |+.++-.--+..++.-+ +. ++. +.-..+..++..+-
T Consensus 151 ~L~~~l~d~~~~~~~~l~~~lL~lLd~p~t----R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lr 226 (371)
T PF14664_consen 151 VLLRALIDGSFSISESLLDTLLYLLDSPRT----RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLR 226 (371)
T ss_pred HHHHHHHhccHhHHHHHHHHHHHHhCCcch----hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHh
Confidence 999999887777888999999999888754 44444333344443322 22 112 12333344444433
Q ss_pred CCCChhHHHHHhcc-cCChhhHHhhhccCCCChHHHHHHHHHHhcCCC-CcHH------HHHHHHhCCChHHHHHHHhhh
Q 008257 246 PHMGHELADALRGA-VGQLGSLIRVISENVGISKEQAAAVGLLAELPE-RDLG------LTRQMLDEGAFGLIFSRVKSI 317 (572)
Q Consensus 246 ~~~~~~~~~~i~~~-~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~-~~~~------~~~~l~~~g~l~~Lv~lL~~~ 317 (572)
...| -+ .+... ..++..||..|..++. +++...+.++..+-. ..+. ..+.+...|-+..-.++....
T Consensus 227 sW~G-Ll--~l~~~~~~~lksLv~~L~~p~~--~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (371)
T PF14664_consen 227 SWPG-LL--YLSMNDFRGLKSLVDSLRLPNP--EIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGF 301 (371)
T ss_pred cCCc-ee--eeecCCchHHHHHHHHHcCCCH--HHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccc
Confidence 2221 10 11111 0468888888888875 677766666554321 0111 111112222210001111000
Q ss_pred ccCC-CCCC--cchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 008257 318 QLGE-TRGS--RFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSL 390 (572)
Q Consensus 318 ~~~~-~~~~--~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~ 390 (572)
..+. ..+. .....+.++=.+ -....+.+.|.++.|+++..+..++.+.+.|..-|+.+-.
T Consensus 302 ~e~~~~~~~~~~~~~~l~~~y~a-------------Lll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 302 AEAKSILPHRSSKRPNLVNHYLA-------------LLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred cccccccCccccccccHHHHHHH-------------HHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 0000 0000 000111111111 1223478999999999999987577888888888877643
No 89
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.016 Score=62.76 Aligned_cols=178 Identities=12% Similarity=0.157 Sum_probs=113.1
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS 158 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~ 158 (572)
.+|.+.++++++.+|..|+-++.++- +.+.+...+.|.++.|.++++.. ++.+..+|..+|..+...+.+..
T Consensus 124 ~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~~gl~~~L~~ll~D~-----~p~VVAnAlaaL~eI~e~~~~~~- 195 (734)
T KOG1061|consen 124 DPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVEDSGLVDALKDLLSDS-----NPMVVANALAALSEIHESHPSVN- 195 (734)
T ss_pred HHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccccchhHHHHHHhcCC-----CchHHHHHHHHHHHHHHhCCCCC-
Confidence 79999999999999999999888864 44456667899999999999842 37889999999999987654311
Q ss_pred cccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHH
Q 008257 159 ITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASI 238 (572)
Q Consensus 159 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~ 238 (572)
........+..++.-+..-..--|.-.+.+|..-.-..+ .+. ...+..+...|.+.+..+...+.
T Consensus 196 -------~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~--~ea------~~i~~r~~p~Lqh~n~avvlsav 260 (734)
T KOG1061|consen 196 -------LLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS--REA------EDICERLTPRLQHANSAVVLSAV 260 (734)
T ss_pred -------cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc--hhH------HHHHHHhhhhhccCCcceEeehH
Confidence 112223345555555543222233344444443332222 122 12355666777787878888888
Q ss_pred HHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHH
Q 008257 239 ELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVG 285 (572)
Q Consensus 239 ~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~ 285 (572)
+.+.++...... +.+.+.+ ..-++|+-+++++. +.+..|+.
T Consensus 261 Kv~l~~~~~~~~-~~~~~~~--K~~~pl~tlls~~~---e~qyvaLr 301 (734)
T KOG1061|consen 261 KVILQLVKYLKQ-VNELLFK--KVAPPLVTLLSSES---EIQYVALR 301 (734)
T ss_pred HHHHHHHHHHHH-HHHHHHH--Hhcccceeeecccc---hhhHHHHh
Confidence 888777754333 2233333 24577888888776 34444433
No 90
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.43 E-value=0.0038 Score=69.11 Aligned_cols=204 Identities=17% Similarity=0.194 Sum_probs=145.7
Q ss_pred CChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHH
Q 008257 261 GQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLA 340 (572)
Q Consensus 261 g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~ 340 (572)
|+.|-.++||+++.. +++-.-+.+=..+-.-|+.++..++++++-.++++.|...+ . ...+-+..++-.|.
T Consensus 512 GIFPYVLKLLQS~a~--ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~--~-----~~~EqrtmaAFVLA 582 (1387)
T KOG1517|consen 512 GIFPYVLKLLQSSAR--ELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQ--A-----IPPEQRTMAAFVLA 582 (1387)
T ss_pred chHHHHHHHhccchH--hhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcC--C-----CCHHHHHHHHHHHH
Confidence 999999999999985 77766666655655558888888999999999999987621 1 12234556888888
Q ss_pred HHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCcc
Q 008257 341 RVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVI 420 (572)
Q Consensus 341 ~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (572)
.++.+ -+.-|+.+.+.+.+..=.+.|+++..+..+.=.+.+|+.|=.+-.
T Consensus 583 viv~n---f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~--------------------------- 632 (1387)
T KOG1517|consen 583 VIVRN---FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYD--------------------------- 632 (1387)
T ss_pred HHHcc---cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcc---------------------------
Confidence 88864 677788899999999888999985357888888888876632110
Q ss_pred ccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCcc-chhhHHHH-----------HhcC
Q 008257 421 TGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVD-IEQGVMVL-----------CEAQ 488 (572)
Q Consensus 421 ~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~-~~~~~~~i-----------~~~g 488 (572)
+..++-++.++.+.|..+|+.+-++|+.+|+.||+++...+.+ +.++...+ .-..
T Consensus 633 -------------~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~ 699 (1387)
T KOG1517|consen 633 -------------EARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIED 699 (1387)
T ss_pred -------------hhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHH
Confidence 1122234778999999999999999999999999999975311 11111111 0111
Q ss_pred Ch----HHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257 489 GI----KPILDVLLEKRTENLQRRAVWVVERIL 517 (572)
Q Consensus 489 ~i----~~L~~lL~~~~~~~~~~~a~~~l~~l~ 517 (572)
-| -.++.++ ..+++-++...+.+|..+.
T Consensus 700 ~i~~~~~~ll~~v-sdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 700 LIIKGLMSLLALV-SDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred HHHhhHHHHHHHH-hccchHHHHHHHHHHHHHH
Confidence 22 2566777 4888888877777776554
No 91
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.38 E-value=0.056 Score=59.73 Aligned_cols=247 Identities=14% Similarity=0.125 Sum_probs=131.2
Q ss_pred HHHHHHHHHHhhccCcchHHHH-HHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc--CcchhHHHHhhhHHHHHHhccc
Q 008257 11 TVEKAEKTLANLEKCENNVRQM-AENGRLQPLLTQILEGPQETKLSLAAFLGDLAL--NSDVKVLVARTVGSCLINIMKS 87 (572)
Q Consensus 11 ~~~~A~~~L~~L~~~~~n~~~i-~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~--~~~~k~~i~~~g~~~Lv~lL~s 87 (572)
++-.|.+++...+.++-.+... .-..+++.+...+.......+.....++-.+.. .+.......+.....+-.+++.
T Consensus 625 TRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lise 704 (1233)
T KOG1824|consen 625 TRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISE 704 (1233)
T ss_pred HHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhH
Confidence 3444555555554433222211 111234455555554444444444444444332 1111122222212344455555
Q ss_pred CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccc
Q 008257 88 GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQT 167 (572)
Q Consensus 88 ~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~ 167 (572)
.+..+-..|+..|.-++...+....-+..-.++.++.+++| +-++-.|..++.++-..- ...+
T Consensus 705 sdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~S-------pllqg~al~~~l~~f~al------V~t~---- 767 (1233)
T KOG1824|consen 705 SDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRS-------PLLQGGALSALLLFFQAL------VITK---- 767 (1233)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhC-------ccccchHHHHHHHHHHHH------HhcC----
Confidence 66778889999999999888877777788899999999987 456666666666553210 0000
Q ss_pred cchhhhHHHHHHHHhcCChhHH-----HHHH-------HHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC--CHHH
Q 008257 168 LVSEDIVHNLLHLISNTGPTIE-----CKLL-------QVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP--QNDL 233 (572)
Q Consensus 168 l~~~~~i~~Lv~lL~~~~~~~q-----~~a~-------~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v 233 (572)
...-+ ...++.++..+.++.+ .+|. .+|...|.... + .....|+.-+.++ +..+
T Consensus 768 ~~~l~-y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s-----~------s~a~kl~~~~~s~~s~~~i 835 (1233)
T KOG1824|consen 768 EPDLD-YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKS-----K------SLATKLIQDLQSPKSSDSI 835 (1233)
T ss_pred CCCcc-HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccc-----h------hHHHHHHHHHhCCCCchhH
Confidence 01112 5667777775443322 2222 22222222111 1 1223344444433 3466
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCc
Q 008257 234 RLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERD 294 (572)
Q Consensus 234 ~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~ 294 (572)
|.-|.-.|..+-++.+..-+ . +.-..+++-+.+++. +++.+|.-+|++++.++
T Consensus 836 kvfa~LslGElgr~~~~s~~-----~-e~~~~iieaf~sp~e--dvksAAs~ALGsl~vgn 888 (1233)
T KOG1824|consen 836 KVFALLSLGELGRRKDLSPQ-----N-ELKDTIIEAFNSPSE--DVKSAASYALGSLAVGN 888 (1233)
T ss_pred HHHHHhhhhhhccCCCCCcc-----h-hhHHHHHHHcCCChH--HHHHHHHHHhhhhhcCc
Confidence 77777777777655321110 0 233467788888885 99999999999998754
No 92
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.37 E-value=0.00043 Score=46.44 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=34.5
Q ss_pred HHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 008257 209 VVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLS 245 (572)
Q Consensus 209 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls 245 (572)
.+..+.+.|+++.|++++.+++++++..++++|+||+
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5678889999999999999989999999999999987
No 93
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.35 E-value=0.0017 Score=62.33 Aligned_cols=185 Identities=16% Similarity=0.125 Sum_probs=115.4
Q ss_pred ccCCHHHHHHHHHHHHHhccCc---chhHHHHhh--hH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCCh
Q 008257 46 LEGPQETKLSLAAFLGDLALNS---DVKVLVART--VG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGIL 119 (572)
Q Consensus 46 ~~~~~~~~~~aa~~L~~l~~~~---~~k~~i~~~--g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i 119 (572)
.+.+.+.|.++...|..+.... .....+.+. .+ ..++..+++....+...|+.++..|+..-...-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5678889999999998887633 333333322 33 67788888777788899999999999754333222244578
Q ss_pred HHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhh-HHHHHHHHhcCChhHHHHHHHHHHH
Q 008257 120 PPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDI-VHNLLHLISNTGPTIECKLLQVLVG 198 (572)
Q Consensus 120 ~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~-i~~Lv~lL~~~~~~~q~~a~~aL~~ 198 (572)
|+|++.+.++. ..+++.|..+|..++.+... ...+ ++.+...+.+.++.++..++..|..
T Consensus 97 ~~Ll~~~~~~~-----~~i~~~a~~~L~~i~~~~~~--------------~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~ 157 (228)
T PF12348_consen 97 PPLLKKLGDSK-----KFIREAANNALDAIIESCSY--------------SPKILLEILSQGLKSKNPQVREECAEWLAI 157 (228)
T ss_dssp HHHHHGGG--------HHHHHHHHHHHHHHHTTS-H----------------HHHHHHHHHHTT-S-HHHHHHHHHHHHH
T ss_pred HHHHHHHcccc-----HHHHHHHHHHHHHHHHHCCc--------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 88998887643 78999999999999875320 1223 5666677788999999999988887
Q ss_pred ccCCCC-ccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 008257 199 LTSSPT-TVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMG 249 (572)
Q Consensus 199 l~~~~~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~ 249 (572)
+..... ..........-...++.+..++.+.++++|..|-.++..+..+.+
T Consensus 158 ~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 158 ILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 755432 111111111113367788889999999999999999998865533
No 94
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.32 E-value=0.14 Score=56.77 Aligned_cols=429 Identities=15% Similarity=0.131 Sum_probs=233.8
Q ss_pred CCHHHHHHHHHHHHhhccC--cchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCc--chhHHHHhhhHHHHH
Q 008257 7 ENLLTVEKAEKTLANLEKC--ENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNS--DVKVLVARTVGSCLI 82 (572)
Q Consensus 7 ~~~~~~~~A~~~L~~L~~~--~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~--~~k~~i~~~g~~~Lv 82 (572)
.|.++.++|..+...+-.+ |.-...+ ...++.|+++|+ ++-.|.-|+.+|..++... -....+.....+.|.
T Consensus 582 ~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~ 657 (1233)
T KOG1824|consen 582 SDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELA 657 (1233)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHH
Confidence 4556666666555544321 1111111 234566666664 4456778889999887632 333444444559999
Q ss_pred HhcccCCHHHHHHHHHHHHHhhcCC--CcHHHHHH--cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257 83 NIMKSGNMQAREAALKALNQISSCE--PSAKVLIH--AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS 158 (572)
Q Consensus 83 ~lL~s~~~~~~~~A~~aL~~Ls~~~--~~~~~iv~--~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~ 158 (572)
..|+......+...+.++..|..+. .....+++ -+=+|+|+ +.. +..+.+.|...|..++.......
T Consensus 658 ~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Li---ses-----dlhvt~~a~~~L~tl~~~~ps~l- 728 (1233)
T KOG1824|consen 658 SFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLI---SES-----DLHVTQLAVAFLTTLAIIQPSSL- 728 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhh---hHH-----HHHHHHHHHHHHHHHHhcccHHH-
Confidence 9998776677788888888777542 11222222 22334433 332 26778889999999886543211
Q ss_pred cccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHH--hc--CChHHHHHHhcCCCHH--
Q 008257 159 ITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIK--SS--GATISLVQFVEAPQND-- 232 (572)
Q Consensus 159 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~--~~--g~i~~Lv~lL~~~~~~-- 232 (572)
.-....+++.+++++++ |-+|-.++.++..+ +.+++ .. -....|+.++..+-.+
T Consensus 729 --------~~~~~~iL~~ii~ll~S--pllqg~al~~~l~~----------f~alV~t~~~~l~y~~l~s~lt~PV~~~~ 788 (1233)
T KOG1824|consen 729 --------LKISNPILDEIIRLLRS--PLLQGGALSALLLF----------FQALVITKEPDLDYISLLSLLTAPVYEQV 788 (1233)
T ss_pred --------HHHhhhhHHHHHHHhhC--ccccchHHHHHHHH----------HHHHHhcCCCCccHHHHHHHHcCCccccc
Confidence 12345688899999986 55666665554432 11111 11 1156677777665432
Q ss_pred ---HHHHHHH-------HHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHH
Q 008257 233 ---LRLASIE-------LIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQML 302 (572)
Q Consensus 233 ---v~~~a~~-------~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~ 302 (572)
+..+|.. +|...+...+.. ....|+.-+.++.....++.-|.-.++.+-.+-+. .-
T Consensus 789 ~~~l~kqa~~siA~cvA~Lt~~~~~~s~s----------~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~----s~ 854 (1233)
T KOG1824|consen 789 TDGLHKQAYYSIAKCVAALTCACPQKSKS----------LATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL----SP 854 (1233)
T ss_pred ccchhHHHHHHHHHHHHHHHHhccccchh----------HHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC----Cc
Confidence 2222221 222222211111 12234444444433236777777777776442110 01
Q ss_pred hCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHH
Q 008257 303 DEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSA 382 (572)
Q Consensus 303 ~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa 382 (572)
..+.-..++..+.+ +.+.++..|.-||++++.+ |-+ ..+|.+.+...+. +.-|.--.
T Consensus 855 ~~e~~~~iieaf~s----------p~edvksAAs~ALGsl~vg---nl~--------~yLpfil~qi~sq--pk~QyLLL 911 (1233)
T KOG1824|consen 855 QNELKDTIIEAFNS----------PSEDVKSAASYALGSLAVG---NLP--------KYLPFILEQIESQ--PKRQYLLL 911 (1233)
T ss_pred chhhHHHHHHHcCC----------ChHHHHHHHHHHhhhhhcC---chH--------hHHHHHHHHHhcc--hHhHHHHH
Confidence 11222344455544 4677888999999999864 221 3468888888774 55666666
Q ss_pred HHHHHhhhhc-cccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHH
Q 008257 383 TALENLSLES-KNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVE 461 (572)
Q Consensus 383 ~aL~~ls~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~ 461 (572)
.+|..+.... .+.-+ + ++. ..+.-|.+-.++..++++.
T Consensus 912 hSlkevi~~~svd~~~---~----~v~----------------------------------~IW~lL~k~cE~~eegtR~ 950 (1233)
T KOG1824|consen 912 HSLKEVIVSASVDGLK---P----YVE----------------------------------KIWALLFKHCECAEEGTRN 950 (1233)
T ss_pred HHHHHHHHHhccchhh---h----hHH----------------------------------HHHHHHHHhcccchhhhHH
Confidence 6665543211 11000 0 000 1222233333455677788
Q ss_pred HHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH-cchhhhhhhcCCCCchHHHHHHh
Q 008257 462 ASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL-RTDDIAYEVSGDPNVSTALVDAF 540 (572)
Q Consensus 462 ~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~Lv~ll 540 (572)
..+..|+.|+..++ +. -+|.|-..+ .++.+..+.-++.++.-.. ..++.-+.+-. ..+ .-...++
T Consensus 951 vvAECLGkL~l~ep------es-----LlpkL~~~~-~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~i-g~fl~~~ 1016 (1233)
T KOG1824|consen 951 VVAECLGKLVLIEP------ES-----LLPKLKLLL-RSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQI-GDFLKLL 1016 (1233)
T ss_pred HHHHHhhhHHhCCh------HH-----HHHHHHHHh-cCCCcchhhhhhheeeeeecCCCCccCHHHH-HHH-HHHHHHH
Confidence 88889999887543 11 146676667 4888888877777764322 22222222222 122 2567889
Q ss_pred hcCCchhHHHHHHHHHhhcc
Q 008257 541 QHADYRTRQIAERALKHIDK 560 (572)
Q Consensus 541 ~~~~~~~~~~Aa~aL~~L~~ 560 (572)
+++|.+||+.|--++-.-.+
T Consensus 1017 ~dpDl~VrrvaLvv~nSaah 1036 (1233)
T KOG1824|consen 1017 RDPDLEVRRVALVVLNSAAH 1036 (1233)
T ss_pred hCCchhHHHHHHHHHHHHHc
Confidence 99999999999888765554
No 95
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.31 E-value=0.0065 Score=67.30 Aligned_cols=224 Identities=16% Similarity=0.155 Sum_probs=153.0
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHc
Q 008257 280 QAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEH 359 (572)
Q Consensus 280 ~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~ 359 (572)
|..|+.+|+.+-.-.+=-...-..-|++|+.+++|++. ..+++--.+-+..++-.. |+.+|..+++.
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~----------a~ELrpiLVFIWAKILAv---D~SCQ~dLvKe 553 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSS----------ARELRPILVFIWAKILAV---DPSCQADLVKE 553 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccc----------hHhhhhhHHHHHHHHHhc---CchhHHHHHhc
Confidence 45566666665443333334455679999999999973 233344444455566544 89999999999
Q ss_pred CchHHHHHHhccC-C-cHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchh
Q 008257 360 NLAALFIELLQSN-G-LDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETF 437 (572)
Q Consensus 360 g~i~~Lv~lL~~~-~-~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 437 (572)
++..-+++.|..+ . +++-|..||..|+.+..+-. + .+.
T Consensus 554 ~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~-l---------------------------------------GQ~ 593 (1387)
T KOG1517|consen 554 NGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK-L---------------------------------------GQK 593 (1387)
T ss_pred cCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc-h---------------------------------------hHH
Confidence 9888889888873 2 56889999999988865311 0 011
Q ss_pred hhhhccchHHHHHhhcCC-CHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 008257 438 CLLEGHAVEKLIALLDHT-NEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERI 516 (572)
Q Consensus 438 ~l~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l 516 (572)
...+.+.|..-...|.++ .+-.+.=.+-.|+.|..|-. ...+.=.+.++...|..+| ..+-++++..|+.+|.++
T Consensus 594 acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~---~Arw~G~r~~AhekL~~~L-sD~vpEVRaAAVFALgtf 669 (1387)
T KOG1517|consen 594 ACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYD---EARWSGRRDNAHEKLILLL-SDPVPEVRAAAVFALGTF 669 (1387)
T ss_pred HhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcc---hhhhccccccHHHHHHHHh-cCccHHHHHHHHHHHHHH
Confidence 123444555555556553 56667778889999998743 5566667889999999999 478899999999999999
Q ss_pred Hcc-----hhhh----hhhc-------CCCCch---HHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257 517 LRT-----DDIA----YEVS-------GDPNVS---TALVDAFQHADYRTRQIAERALKHIDK 560 (572)
Q Consensus 517 ~~~-----~~~~----~~~~-------~~~~~~---~~Lv~ll~~~~~~~~~~Aa~aL~~L~~ 560 (572)
..+ ++-. .++. ....++ ..|+.+++.+++-++...+-+|.+...
T Consensus 670 l~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 670 LSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred hcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 863 1111 1111 111122 378899999999999999999988764
No 96
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.30 E-value=0.0064 Score=64.37 Aligned_cols=277 Identities=15% Similarity=0.124 Sum_probs=177.6
Q ss_pred HHHHHHHhhcCCCcHHHHHHcCChHHHHHHH--hc---cCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccch
Q 008257 96 ALKALNQISSCEPSAKVLIHAGILPPLVKDL--FT---VGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVS 170 (572)
Q Consensus 96 A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL--~s---~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~ 170 (572)
|+.+|+-|+.++.+.+.+....++..|.++- .. ...+..+..+...|..+|+|+.-.+...+ +.+..
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR--------~~~~~ 72 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSAR--------QIFVD 72 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHH--------HHHHH
Confidence 4567888888888888888777888888765 00 00113457889999999999987654332 34566
Q ss_pred hhhHHHHHHHHhcC-----ChhHHHHHHHHHHHccCCCCccHHHHHH-HHhcCChHHHHHHhcCC---------------
Q 008257 171 EDIVHNLLHLISNT-----GPTIECKLLQVLVGLTSSPTTVLSVVSA-IKSSGATISLVQFVEAP--------------- 229 (572)
Q Consensus 171 ~~~i~~Lv~lL~~~-----~~~~q~~a~~aL~~l~~~~~~~~~~~~~-i~~~g~i~~Lv~lL~~~--------------- 229 (572)
.|..+.++..|+.. +++++.-..|.|.-++.... ..+.. +-+.+|+..++..|...
T Consensus 73 ~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~---~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~ 149 (446)
T PF10165_consen 73 LGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRP---DDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPS 149 (446)
T ss_pred cCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCh---hHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCC
Confidence 78889999999875 78899999999988887654 23444 44568888887765310
Q ss_pred --CHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhc-------cCCCChHHHHHHHHHHhcCCCCcHHHH--
Q 008257 230 --QNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVIS-------ENVGISKEQAAAVGLLAELPERDLGLT-- 298 (572)
Q Consensus 230 --~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~-------~~~~~~~~~~~A~~~L~~L~~~~~~~~-- 298 (572)
+......+++++.|+..+.+....+... ..++.|+.+|. ++.+.......++.+|.|++.......
T Consensus 150 ~~~~~~l~EiLKllFNit~~~~~~~~~~~~---~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~ 226 (446)
T PF10165_consen 150 PMDEEALSEILKLLFNITLHYPKSVPEEFS---PSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLS 226 (446)
T ss_pred cchHHHHHHHHHHHHHhhhccCcccchhhh---HHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhc
Confidence 2234567788999997543322110111 23444444432 222234678889999999865332220
Q ss_pred -----H----HHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHc----------
Q 008257 299 -----R----QMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEH---------- 359 (572)
Q Consensus 299 -----~----~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~---------- 359 (572)
. .......+..|+.+|...-. .... ....+.....+.+|.+++.. +...|+.++..
T Consensus 227 ~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~-~~~~-~~l~~~l~PlL~lL~~~~~~---~~~~Rk~lr~~lLP~~~Dr~~ 301 (446)
T PF10165_consen 227 PKFQQSSLFPEGDNMDVVERLLDFLDKRLD-KYEA-LKLDELLTPLLTLLTRLARA---AREVRKYLRARLLPPDKDRKK 301 (446)
T ss_pred ccCCcccccCCCCChHHHHHHHHHHHHHHH-hcCc-ccchhhHhhHHHHHHHHHHh---cHHHHHHHHHHhCCChhhccc
Confidence 0 01233457788888865211 0000 01234456677888888864 56777776552
Q ss_pred ------CchHHHHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 008257 360 ------NLAALFIELLQSNGLDKVQMVSATALENLSLES 392 (572)
Q Consensus 360 ------g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~ 392 (572)
..-..|+.++.++ .+.+|..++.-|+.++..+
T Consensus 302 ~~e~~~tL~~rLlrLmt~~-~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 302 PPEKGDTLRSRLLRLMTSP-DPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CCCCCcchHHHHHHHhCCC-CchHHHHHHHHHHHHHhhh
Confidence 3445788999998 6999999999999987644
No 97
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.0089 Score=63.86 Aligned_cols=223 Identities=17% Similarity=0.198 Sum_probs=152.0
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHH
Q 008257 218 ATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGL 297 (572)
Q Consensus 218 ~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~ 297 (572)
--+-++.||.+.-+.+|..|+-++..+.-. ..++++. ++|.|++-|+.+++ .++.+|+.+|+.|+..+|.+
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLk----YPeAlr~---~FprL~EkLeDpDp--~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLK----YPEALRP---CFPRLVEKLEDPDP--SVVSAAVSVICELARKNPQN 215 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHh----hhHhHhh---hHHHHHHhccCCCc--hHHHHHHHHHHHHHhhCCcc
Confidence 345677899999999999999998877632 1235663 79999999999997 89999999999999988766
Q ss_pred HHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHH
Q 008257 298 TRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKV 377 (572)
Q Consensus 298 ~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v 377 (572)
--.+ -|.+..+|-.+ .+-|++-..+.....++-. .|...+. .+|+|.+++++. +
T Consensus 216 yL~L-----AP~ffkllttS---------sNNWmLIKiiKLF~aLtpl---EPRLgKK-----Lieplt~li~sT-~--- 269 (877)
T KOG1059|consen 216 YLQL-----APLFYKLLVTS---------SNNWVLIKLLKLFAALTPL---EPRLGKK-----LIEPITELMEST-V--- 269 (877)
T ss_pred cccc-----cHHHHHHHhcc---------CCCeehHHHHHHHhhcccc---Cchhhhh-----hhhHHHHHHHhh-H---
Confidence 3322 37777888652 3678888888887777743 6766554 579999999986 2
Q ss_pred HHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCH
Q 008257 378 QMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNE 457 (572)
Q Consensus 378 k~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~ 457 (572)
|-..|+......-.- .++ .+-+ +.+..+ .=+++.|=-++.++|+
T Consensus 270 ---AmSLlYECvNTVVa~-----------------s~s------~g~~---------d~~asi-qLCvqKLr~fiedsDq 313 (877)
T KOG1059|consen 270 ---AMSLLYECVNTVVAV-----------------SMS------SGMS---------DHSASI-QLCVQKLRIFIEDSDQ 313 (877)
T ss_pred ---HHHHHHHHHHHheee-----------------hhc------cCCC---------CcHHHH-HHHHHHHhhhhhcCCc
Confidence 222222211100000 000 0000 000001 1156777788889999
Q ss_pred hHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcch
Q 008257 458 KVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTD 520 (572)
Q Consensus 458 ~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~ 520 (572)
..+--.+-|++.++..++ +.+... -..++++| ...|+.+|-+|+.++.-+..-+
T Consensus 314 NLKYlgLlam~KI~ktHp------~~Vqa~--kdlIlrcL-~DkD~SIRlrALdLl~gmVskk 367 (877)
T KOG1059|consen 314 NLKYLGLLAMSKILKTHP------KAVQAH--KDLILRCL-DDKDESIRLRALDLLYGMVSKK 367 (877)
T ss_pred cHHHHHHHHHHHHhhhCH------HHHHHh--HHHHHHHh-ccCCchhHHHHHHHHHHHhhhh
Confidence 999999999999987543 233222 24577899 6999999999999998887543
No 98
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.23 E-value=0.021 Score=60.07 Aligned_cols=343 Identities=10% Similarity=0.091 Sum_probs=188.2
Q ss_pred HHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHcc
Q 008257 121 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLT 200 (572)
Q Consensus 121 ~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~ 200 (572)
..+.+|+++ ++.+++.|+.+.+.|+..=..+.++ ..+..-| ..|.+-|....|++--..+.|++.+.
T Consensus 608 tiL~~L~~k-----~p~vR~~aadl~~sl~~vlk~c~e~------~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~ 674 (975)
T COG5181 608 TILKLLRSK-----PPDVRIRAADLMGSLAKVLKACGET------KELAKLG--NILYENLGEDYPEVLGSILKAICSIY 674 (975)
T ss_pred HHHHHhcCC-----CccHHHHHHHHHHHHHHHHHhcchH------HHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHh
Confidence 344566654 5899999999988886421100000 1111112 23455666778888887788777775
Q ss_pred CCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhH--HHHHhcccCChhhHHhhhccCCCChH
Q 008257 201 SSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHEL--ADALRGAVGQLGSLIRVISENVGISK 278 (572)
Q Consensus 201 ~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~--~~~i~~~~g~l~~Lv~lL~~~~~~~~ 278 (572)
+.-.- ...+.- -.|.+|.|...|++++.+++.+...++..++...++.+ .+-++. ---|+++|.+-+. +
T Consensus 675 sv~~~-~~mqpP--i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRI----cfeLvd~Lks~nK--e 745 (975)
T COG5181 675 SVHRF-RSMQPP--ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRI----CFELVDSLKSWNK--E 745 (975)
T ss_pred hhhcc-cccCCc--hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHH----HHHHHHHHHHhhH--H
Confidence 54210 000000 25889999999999999999999999999987644332 233332 2457888887774 8
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHH
Q 008257 279 EQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCE 358 (572)
Q Consensus 279 ~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~ 358 (572)
++..|..+++.++.- +--..++..|++-|+...+. .++. ..-+++..... .--
T Consensus 746 iRR~A~~tfG~Is~a-------iGPqdvL~~LlnnLkvqeRq----~Rvc---tsvaI~iVae~-------------cgp 798 (975)
T COG5181 746 IRRNATETFGCISRA-------IGPQDVLDILLNNLKVQERQ----QRVC---TSVAISIVAEY-------------CGP 798 (975)
T ss_pred HHHhhhhhhhhHHhh-------cCHHHHHHHHHhcchHHHHH----hhhh---hhhhhhhhHhh-------------cCc
Confidence 999898888776541 11112334444444431110 0000 00112211111 122
Q ss_pred cCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhh
Q 008257 359 HNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFC 438 (572)
Q Consensus 359 ~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 438 (572)
..++|.|..--..+ ...||.-...|++.+.....+.++. +
T Consensus 799 fsVlP~lm~dY~TP-e~nVQnGvLkam~fmFeyig~~s~d---------------------------------------Y 838 (975)
T COG5181 799 FSVLPTLMSDYETP-EANVQNGVLKAMCFMFEYIGQASLD---------------------------------------Y 838 (975)
T ss_pred hhhHHHHHhcccCc-hhHHHHhHHHHHHHHHHHHHHHHHH---------------------------------------H
Confidence 35678877766677 7889988888888876654433210 1
Q ss_pred hhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhh----cCCHHHHHHHHHHHH
Q 008257 439 LLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLE----KRTENLQRRAVWVVE 514 (572)
Q Consensus 439 l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~~~~~~a~~~l~ 514 (572)
+- -..|.|-+-|...|+--+..|...+..|+.+.... ...++.-+|+.+| . .+++.+...-...++
T Consensus 839 vy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt-------g~eda~IHLlNll-wpNIle~sPhvi~~~~Eg~e 908 (975)
T COG5181 839 VY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT-------GDEDAAIHLLNLL-WPNILEPSPHVIQSFDEGME 908 (975)
T ss_pred HH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc-------ccHHHHHHHHHHh-hhhccCCCcHHHHHHHHHHH
Confidence 11 12344556677788888889999999998763210 0111222344444 1 233444333333333
Q ss_pred HHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhccc--CCCCCCCC
Q 008257 515 RILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKI--PNFSGIFP 569 (572)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~--~~~s~~~~ 569 (572)
.+ +..++. +.+-.-+++=|.+++..||+.=...+..+..+ -.++.||+
T Consensus 909 ~~------~~~lg~-g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~~~damvp~yp 958 (975)
T COG5181 909 SF------ATVLGS-GAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVFDSDAMVPCYP 958 (975)
T ss_pred HH------HHHhcc-HHHHHHHHHhccCchHHHHHHHHHHHhhhhhccccccccccc
Confidence 22 222332 22223445556677777876666666555442 23445554
No 99
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.041 Score=53.68 Aligned_cols=292 Identities=9% Similarity=0.082 Sum_probs=187.8
Q ss_pred CCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHH--HccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHH
Q 008257 6 SENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQ--ILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCL 81 (572)
Q Consensus 6 s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~--L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~L 81 (572)
.+|.++...|.+-+..++.-+.....++++...+++-.+ -...+.-+|......+..+.. +.+.-......|. ..|
T Consensus 139 geddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlL 218 (524)
T KOG4413|consen 139 GEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLL 218 (524)
T ss_pred CCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHH
Confidence 367778899999999999999999999999999888543 223444556666666766665 5565556666777 777
Q ss_pred HHhccc-CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccc
Q 008257 82 INIMKS-GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSIT 160 (572)
Q Consensus 82 v~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~ 160 (572)
..-|+. .+.-++-+++.....|+..+..++.+...|.|..+....+-.++ ++--+-.+......+-.... +
T Consensus 219 eaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGads---dPfekfralmgfgkffgkea-----i 290 (524)
T KOG4413|consen 219 EAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADS---DPFEKFRALMGFGKFFGKEA-----I 290 (524)
T ss_pred HHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCC---CcHHHHHHHHHHHHHhcchH-----H
Confidence 777765 67778899999999999988889999999999999999864432 23334334433333322110 1
Q ss_pred cCCCccccch--hhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHh---cCCC-HHHH
Q 008257 161 VGPDNQTLVS--EDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFV---EAPQ-NDLR 234 (572)
Q Consensus 161 ~~~~~~~l~~--~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL---~~~~-~~v~ 234 (572)
+|-.-+.++. .-+|..-++++.+.+|+.+..|+.++.-+.++..+. ..+ ..-|-|..-.++ .+.+ ..-+
T Consensus 291 mdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGa----dll-lkTgppaaehllarafdqnahakq 365 (524)
T KOG4413|consen 291 MDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGA----DLL-LKTGPPAAEHLLARAFDQNAHAKQ 365 (524)
T ss_pred hhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchh----HHH-hccCChHHHHHHHHHhcccccchH
Confidence 1100011111 124555667777899999999999999999887652 222 233444333333 2222 2457
Q ss_pred HHHHHHHHHcCCC---CChh---------HHHHHh----ccc--CChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHH
Q 008257 235 LASIELIQNLSPH---MGHE---------LADALR----GAV--GQLGSLIRVISENVGISKEQAAAVGLLAELPERDLG 296 (572)
Q Consensus 235 ~~a~~~L~~Ls~~---~~~~---------~~~~i~----~~~--g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~ 296 (572)
+.+..+|.+++.. .++. ....+. .+. ..+..+...++.+.+ +++.++..++..++...=-
T Consensus 366 eaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfp--EihcAalktfTAiaaqPWa 443 (524)
T KOG4413|consen 366 EAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFP--EIHCAALKTFTAIAAQPWA 443 (524)
T ss_pred HHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCCh--hhHHHHHHHHHHHHcCcHH
Confidence 7778888888742 1111 111111 110 234456666777775 9999999999998886656
Q ss_pred HHHHHHhCCChHHHHH
Q 008257 297 LTRQMLDEGAFGLIFS 312 (572)
Q Consensus 297 ~~~~l~~~g~l~~Lv~ 312 (572)
.+..+.++|.+...+.
T Consensus 444 lkeifakeefieiVtD 459 (524)
T KOG4413|consen 444 LKEIFAKEEFIEIVTD 459 (524)
T ss_pred HHHHhcCccceeeecc
Confidence 6666777777665543
No 100
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.076 Score=56.88 Aligned_cols=304 Identities=16% Similarity=0.216 Sum_probs=181.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCC--HHHHHH-HHHHHHHcCCCCCh
Q 008257 174 VHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ--NDLRLA-SIELIQNLSPHMGH 250 (572)
Q Consensus 174 i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~v~~~-a~~~L~~Ls~~~~~ 250 (572)
+..+..=|.+.++..+.-|+.++.++.... .++++ +.-|+ ++|.+++ +-++.. |+++|+-+-.. +
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~re-----~~ea~--~~DI~---KlLvS~~~~~~vkqkaALclL~L~r~s-p- 180 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSRE-----MAEAF--ADDIP---KLLVSGSSMDYVKQKAALCLLRLFRKS-P- 180 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccHh-----HHHHh--hhhhH---HHHhCCcchHHHHHHHHHHHHHHHhcC-c-
Confidence 444444455677778888888888886542 33332 23455 6666665 345554 44555544332 2
Q ss_pred hHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhc--cCCCC-----
Q 008257 251 ELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQ--LGETR----- 323 (572)
Q Consensus 251 ~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~--~~~~~----- 323 (572)
+ .+... +-...++.+|...+- .+-.++...|..|++.+++.-. +.++.-+..|.... .+...
T Consensus 181 D---l~~~~-~W~~riv~LL~D~~~--gv~ta~~sLi~~lvk~~p~~yk-----~~~~~avs~L~riv~~~~t~~qdYTy 249 (938)
T KOG1077|consen 181 D---LVNPG-EWAQRIVHLLDDQHM--GVVTAATSLIEALVKKNPESYK-----TCLPLAVSRLSRIVVVVGTSLQDYTY 249 (938)
T ss_pred c---ccChh-hHHHHHHHHhCcccc--ceeeehHHHHHHHHHcCCHHHh-----hhHHHHHHHHHHHHhhcccchhhcee
Confidence 2 22221 346778888887773 5666777777777776554422 45555555444311 11110
Q ss_pred CCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccC-CcHHHH-HHHHHHHH----HhhhhccccCC
Q 008257 324 GSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN-GLDKVQ-MVSATALE----NLSLESKNLTK 397 (572)
Q Consensus 324 ~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~vk-~~Aa~aL~----~ls~~~~~~~~ 397 (572)
-.-..+|++-+++.+|..+... +|+..+..+.+ ++..+....+.+ .+.+++ .+|-.|+- +|+.+-. .
T Consensus 250 y~vP~PWL~vKl~rlLq~~p~~--~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D---~ 322 (938)
T KOG1077|consen 250 YFVPAPWLQVKLLRLLQIYPTP--EDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLD---S 322 (938)
T ss_pred ecCCChHHHHHHHHHHHhCCCC--CCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcC---C
Confidence 0124789999999999988655 78888776544 223333333322 122333 33433321 1221110 0
Q ss_pred CCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccc
Q 008257 398 LPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDI 477 (572)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~ 477 (572)
+... + ..++..|-++|.+....++--|+..++.|+..+.
T Consensus 323 ------------------------------------e~~l-l--~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~-- 361 (938)
T KOG1077|consen 323 ------------------------------------EPEL-L--SRAVNQLGQFLSHRETNIRYLALESMCKLASSEF-- 361 (938)
T ss_pred ------------------------------------cHHH-H--HHHHHHHHHHhhcccccchhhhHHHHHHHHhccc--
Confidence 0111 1 2377788999999999999999999999997643
Q ss_pred hhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHh
Q 008257 478 EQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557 (572)
Q Consensus 478 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~ 557 (572)
....+..+ ..-++..|+..+|..++.+|+.+|..++..+ +.+++. ..|++.|.+.+...|+.-..=.+-
T Consensus 362 --s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~-Nak~IV------~elLqYL~tAd~sireeivlKvAI 430 (938)
T KOG1077|consen 362 --SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS-NAKQIV------AELLQYLETADYSIREEIVLKVAI 430 (938)
T ss_pred --hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh-hHHHHH------HHHHHHHhhcchHHHHHHHHHHHH
Confidence 23344443 5667788866889999999999998887543 333433 368999999998888765544444
Q ss_pred hc
Q 008257 558 ID 559 (572)
Q Consensus 558 L~ 559 (572)
|+
T Consensus 431 La 432 (938)
T KOG1077|consen 431 LA 432 (938)
T ss_pred HH
Confidence 43
No 101
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.18 E-value=0.13 Score=54.02 Aligned_cols=291 Identities=12% Similarity=0.088 Sum_probs=166.8
Q ss_pred hHHHHHHhcCCCH-HHHHHHHHHHHHcCCCCChhHHHHHhcccCChhh-HHhhhccCCCChHHHHHHHHHHhcCCCCcHH
Q 008257 219 TISLVQFVEAPQN-DLRLASIELIQNLSPHMGHELADALRGAVGQLGS-LIRVISENVGISKEQAAAVGLLAELPERDLG 296 (572)
Q Consensus 219 i~~Lv~lL~~~~~-~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~-Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~ 296 (572)
...++.....+.+ ..+..++.++.+++....++. .+..+..++-. ...-++++.+ ..+|.+|+++|.+- -..
T Consensus 135 m~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~--li~~sN~il~aiv~ga~k~et~-~avRLaaL~aL~ds---l~f 208 (858)
T COG5215 135 MEEMVRNVGDEQPVSGKCESLGICGYHCESEAPED--LIQMSNVILFAIVMGALKNETT-SAVRLAALKALMDS---LMF 208 (858)
T ss_pred HHHHHHhccccCchHhHHHHHHHHHHHhhccCHHH--HHHHhhHHHHHHHHhhcccCch-HHHHHHHHHHHHHH---HHH
Confidence 3344444444444 688899999999986543321 12222122222 2233444444 47899999988761 112
Q ss_pred HHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHH
Q 008257 297 LTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDK 376 (572)
Q Consensus 297 ~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 376 (572)
.+.-+..++-..++.+...+...+ ++.+++..+.+.|.++-.- +=+..+...+.-........++++ +++
T Consensus 209 v~~nf~~E~erNy~mqvvceatq~------~d~e~q~aafgCl~kim~L---yY~fm~~ymE~aL~alt~~~mks~-nd~ 278 (858)
T COG5215 209 VQGNFCYEEERNYFMQVVCEATQG------NDEELQHAAFGCLNKIMML---YYKFMQSYMENALAALTGRFMKSQ-NDE 278 (858)
T ss_pred HHHhhcchhhhchhheeeehhccC------CcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCc-chH
Confidence 334455555556666655542222 4678888899999888743 444555566666667777888888 899
Q ss_pred HHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhh-hccchHHHHHhhcCC
Q 008257 377 VQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLL-EGHAVEKLIALLDHT 455 (572)
Q Consensus 377 vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~-~~g~i~~Lv~lL~~~ 455 (572)
++..|..--..+.....+-.-. . . -+ + -.|.. ...|... -++.+|-|++||...
T Consensus 279 va~qavEfWsticeEeid~~~e-~--------~---~~---p----e~p~q------n~~fa~aav~dvlP~lL~LL~~q 333 (858)
T COG5215 279 VAIQAVEFWSTICEEEIDGEME-D--------K---YL---P----EVPAQ------NHGFARAAVADVLPELLSLLEKQ 333 (858)
T ss_pred HHHHHHHHHHHHHHHHhhhHHH-H--------h---hc---c----cCchh------hcchHHHHHHHHHHHHHHHHHhc
Confidence 8877765433333221110000 0 0 00 0 00110 0122211 345899999999763
Q ss_pred CH-------hHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc--hhhhhhh
Q 008257 456 NE-------KVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT--DDIAYEV 526 (572)
Q Consensus 456 ~~-------~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~--~~~~~~~ 526 (572)
++ .+..+|...|--+++... ..|.+- ....+-+-+ .+++-..++.|+.++..+... +.+...+
T Consensus 334 ~ed~~~DdWn~smaA~sCLqlfaq~~g------d~i~~p-Vl~FvEqni-~~~~w~nreaavmAfGSvm~gp~~~~lT~~ 405 (858)
T COG5215 334 GEDYYGDDWNPSMAASSCLQLFAQLKG------DKIMRP-VLGFVEQNI-RSESWANREAAVMAFGSVMHGPCEDCLTKI 405 (858)
T ss_pred CCCccccccchhhhHHHHHHHHHHHhh------hHhHHH-HHHHHHHhc-cCchhhhHHHHHHHhhhhhcCccHHHHHhh
Confidence 33 456666666766654321 122221 111222334 266777889999999999843 5666666
Q ss_pred cCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257 527 SGDPNVSTALVDAFQHADYRTRQIAERALKHIDK 560 (572)
Q Consensus 527 ~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~ 560 (572)
... .++ .+..+..+..--++..++|++..++-
T Consensus 406 V~q-alp-~i~n~m~D~~l~vk~ttAwc~g~iad 437 (858)
T COG5215 406 VPQ-ALP-GIENEMSDSCLWVKSTTAWCFGAIAD 437 (858)
T ss_pred HHh-hhH-HHHHhcccceeehhhHHHHHHHHHHH
Confidence 653 444 67777777778999999999887764
No 102
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.49 Score=51.00 Aligned_cols=261 Identities=11% Similarity=0.127 Sum_probs=145.1
Q ss_pred HHHHHhcccCC--HHHHHHHHHHHHHhhcC-CCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257 79 SCLINIMKSGN--MQAREAALKALNQISSC-EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD 155 (572)
Q Consensus 79 ~~Lv~lL~s~~--~~~~~~A~~aL~~Ls~~-~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~ 155 (572)
+-+-++|.|++ .-++..|+-||..|-.. ++- +--.+-..+++.+|...+ +.+.-.+...+.-|++..++
T Consensus 149 ~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~D~~-----~gv~ta~~sLi~~lvk~~p~ 220 (938)
T KOG1077|consen 149 DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLDDQH-----MGVVTAATSLIEALVKKNPE 220 (938)
T ss_pred hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhCccc-----cceeeehHHHHHHHHHcCCH
Confidence 34446777654 34566666666666653 321 112356788899997543 66667777888888875443
Q ss_pred CCccccCCCccccchhhhHHHHHHHHhc-------------CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHH
Q 008257 156 FDSITVGPDNQTLVSEDIVHNLLHLISN-------------TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISL 222 (572)
Q Consensus 156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~-------------~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L 222 (572)
..+.+ -.-+|..|.+.... +.|=.+.++++.|..+-...++ ..+... ...+..+
T Consensus 221 ~yk~~---------~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~--~~r~~l--~evl~~i 287 (938)
T KOG1077|consen 221 SYKTC---------LPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDP--STRARL--NEVLERI 287 (938)
T ss_pred HHhhh---------HHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCc--hHHHHH--HHHHHHH
Confidence 22111 11233333333321 3555778888988887433332 222221 1123333
Q ss_pred HHHhcCC--CHHHH-HHHHHH--H--HHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcH
Q 008257 223 VQFVEAP--QNDLR-LASIEL--I--QNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDL 295 (572)
Q Consensus 223 v~lL~~~--~~~v~-~~a~~~--L--~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~ 295 (572)
+...+.. ..+++ .+|-.+ + -+|+.+.+.+- +.+. .++..|-++|.+... .+|.-|.-..+.|+....
T Consensus 288 Lnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~-~ll~---~~~~~Lg~fls~rE~--NiRYLaLEsm~~L~ss~~ 361 (938)
T KOG1077|consen 288 LNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEP-ELLS---RAVNQLGQFLSHRET--NIRYLALESMCKLASSEF 361 (938)
T ss_pred HhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcH-HHHH---HHHHHHHHHhhcccc--cchhhhHHHHHHHHhccc
Confidence 3333211 11222 222221 1 12333322221 1333 378899999988875 788888888888877544
Q ss_pred HHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcH
Q 008257 296 GLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLD 375 (572)
Q Consensus 296 ~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 375 (572)
.+ +.+... ...+++.|+..+ +.+++..++-.|..+| |.++.+.|++ -+.+-|.+. +.
T Consensus 362 s~-davK~h--~d~Ii~sLkter---------DvSirrravDLLY~mc-----D~~Nak~IV~-----elLqYL~tA-d~ 418 (938)
T KOG1077|consen 362 SI-DAVKKH--QDTIINSLKTER---------DVSIRRRAVDLLYAMC-----DVSNAKQIVA-----ELLQYLETA-DY 418 (938)
T ss_pred hH-HHHHHH--HHHHHHHhcccc---------chHHHHHHHHHHHHHh-----chhhHHHHHH-----HHHHHHhhc-ch
Confidence 44 444443 677888887422 5677888999999998 6777776654 345566666 66
Q ss_pred HHHHHHHHHHHHhh
Q 008257 376 KVQMVSATALENLS 389 (572)
Q Consensus 376 ~vk~~Aa~aL~~ls 389 (572)
.+|+.-+.=++-|+
T Consensus 419 sireeivlKvAILa 432 (938)
T KOG1077|consen 419 SIREEIVLKVAILA 432 (938)
T ss_pred HHHHHHHHHHHHHH
Confidence 67766554444343
No 103
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.063 Score=56.12 Aligned_cols=352 Identities=13% Similarity=0.114 Sum_probs=203.3
Q ss_pred hH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257 77 VG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD 155 (572)
Q Consensus 77 g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~ 155 (572)
++ ||.+..+...+..++-.|+..|.|++.-........-.-....|.++-... +.. ...+++.|-.+.+.-
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDs-----d~~-V~~~aeLLdRLikdI-- 155 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADS-----DQN-VRGGAELLDRLIKDI-- 155 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCC-----ccc-cccHHHHHHHHHHHh--
Confidence 56 999999998889999999999999997433322222223334444444321 123 346777777775431
Q ss_pred CCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHH
Q 008257 156 FDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRL 235 (572)
Q Consensus 156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 235 (572)
+-+..+.+.-++.||.|-.-+...++..+.-.+.-|..+-+.|.- +.... -...++-|..+|..+++++|.
T Consensus 156 -----Vte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~--~m~~y--l~~~ldGLf~~LsD~s~eVr~ 226 (675)
T KOG0212|consen 156 -----VTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDL--EMISY--LPSLLDGLFNMLSDSSDEVRT 226 (675)
T ss_pred -----ccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcH--HHHhc--chHHHHHHHHHhcCCcHHHHH
Confidence 111112344556666666666667888888888888777666541 11111 123466778888888889987
Q ss_pred HHHHHHHHc----CCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHH
Q 008257 236 ASIELIQNL----SPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIF 311 (572)
Q Consensus 236 ~a~~~L~~L----s~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv 311 (572)
.+--++..+ ... +.. +.-. ..++.|+.-+.++++ .+|..|+.-|..+..-.+.. -...-+|.+..++
T Consensus 227 ~~~t~l~~fL~eI~s~-P~s----~d~~-~~i~vlv~~l~ss~~--~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iL 297 (675)
T KOG0212|consen 227 LTDTLLSEFLAEIRSS-PSS----MDYD-DMINVLVPHLQSSEP--EIQLKALTWIQEFVKIPGRD-LLLYLSGILTAIL 297 (675)
T ss_pred HHHHHHHHHHHHHhcC-ccc----cCcc-cchhhccccccCCcH--HHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcc
Confidence 666555544 222 111 1111 467888888988886 88888877776665532222 1233446666666
Q ss_pred HHHhhhccCCCCCCcchhhHHHHH---HHHHHHHhccCCCChHHHHHHHHc-CchHHHHHHhccCCcHHHHHHHHHHHHH
Q 008257 312 SRVKSIQLGETRGSRFVTPFLEGL---LSVLARVTFVLSDEPDAIALCCEH-NLAALFIELLQSNGLDKVQMVSATALEN 387 (572)
Q Consensus 312 ~lL~~~~~~~~~~~~~~~~~~e~a---~~aL~~l~~~~~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ 387 (572)
.++.+.. ...+.+.+ -+.|..+.+ .+...+. ++. .++..|.+.+.+. ..+.|..+..=+..
T Consensus 298 pc~s~~e---------~~~i~~~a~~~n~~l~~l~s----~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~ 362 (675)
T KOG0212|consen 298 PCLSDTE---------EMSIKEYAQMVNGLLLKLVS----SERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIIL 362 (675)
T ss_pred cCCCCCc---------cccHHHHHHHHHHHHHHHHh----hhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHH
Confidence 6665421 11122221 122333331 1221111 232 3566777777777 77777665554444
Q ss_pred hhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHH
Q 008257 388 LSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAAL 467 (572)
Q Consensus 388 ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 467 (572)
+-...++. .-.-.....+.|++-|++++++|+..++..+
T Consensus 363 l~~~~p~q-----------------------------------------l~~h~~~if~tLL~tLsd~sd~vvl~~L~ll 401 (675)
T KOG0212|consen 363 LYHKAPGQ-----------------------------------------LLVHNDSIFLTLLKTLSDRSDEVVLLALSLL 401 (675)
T ss_pred HHhhCcch-----------------------------------------hhhhccHHHHHHHHhhcCchhHHHHHHHHHH
Confidence 43322211 0011234668899999999999999999999
Q ss_pred HHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHc
Q 008257 468 STVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILR 518 (572)
Q Consensus 468 ~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~ 518 (572)
.+++.++... +... .+..|+++.. ....-++.++.-++.++|.
T Consensus 402 a~i~~s~~~~-~~~~------fl~sLL~~f~-e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 402 ASICSSSNSP-NLRK------FLLSLLEMFK-EDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHhcCcccc-cHHH------HHHHHHHHHh-hhhHHHHhhhhHHHHHHHH
Confidence 9999876522 1111 1233445553 3444567778888777763
No 104
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.0061 Score=64.42 Aligned_cols=260 Identities=16% Similarity=0.221 Sum_probs=165.1
Q ss_pred hhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-
Q 008257 170 SEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHM- 248 (572)
Q Consensus 170 ~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~- 248 (572)
.+++...|..+....++.++.+|+.+|..|..... ..++ .....++++...+..||..|+++++-.+...
T Consensus 196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k----L~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p 266 (823)
T KOG2259|consen 196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFK----LSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCP 266 (823)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHhhccccc----ccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCC
Confidence 35566668888888899999999999988877432 2222 3456788999888999999988877665321
Q ss_pred ------ChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCC
Q 008257 249 ------GHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGET 322 (572)
Q Consensus 249 ------~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~ 322 (572)
+++ +.+.. .++..+-+.+...+- .++..|+.+|+.+..-+.++...-.+ ..+..-++..++...
T Consensus 267 ~~~e~e~~e--~kl~D--~aF~~vC~~v~D~sl--~VRV~AaK~lG~~~~vSee~i~QTLd----KKlms~lRRkr~ahk 336 (823)
T KOG2259|consen 267 APLERESEE--EKLKD--AAFSSVCRAVRDRSL--SVRVEAAKALGEFEQVSEEIIQQTLD----KKLMSRLRRKRTAHK 336 (823)
T ss_pred Ccccchhhh--hhhHH--HHHHHHHHHHhcCce--eeeehHHHHhchHHHhHHHHHHHHHH----HHHhhhhhhhhhccc
Confidence 111 12333 366677777776663 67888888888776545444332222 122222221111100
Q ss_pred CCCcchhhHHHHHHHHHHHH--hc--------cCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 008257 323 RGSRFVTPFLEGLLSVLARV--TF--------VLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLES 392 (572)
Q Consensus 323 ~~~~~~~~~~e~a~~aL~~l--~~--------~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~ 392 (572)
+ ......+. ++ +-.++.+....++..|+-..||.-|.+. =-+|++.|..+++.|+.+.
T Consensus 337 r-----------pk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ss 404 (823)
T KOG2259|consen 337 R-----------PKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSS 404 (823)
T ss_pred c-----------hHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCC
Confidence 0 00000000 00 0001112233477889989999888887 7889999999999998654
Q ss_pred cccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q 008257 393 KNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVID 472 (572)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~ 472 (572)
+.. -..++..||+++...-+.|+..|..+|..++.
T Consensus 405 P~F---------------------------------------------A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~ 439 (823)
T KOG2259|consen 405 PGF---------------------------------------------AVRALDFLVDMFNDEIEVVRLKAIFALTMISV 439 (823)
T ss_pred CCc---------------------------------------------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 321 12378899999999999999999999999986
Q ss_pred cCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHH
Q 008257 473 DGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVER 515 (572)
Q Consensus 473 ~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~ 515 (572)
+.. . +..-++.+++.| +..++++++..-.+|.+
T Consensus 440 ~l~-i--------~eeql~~il~~L-~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 440 HLA-I--------REEQLRQILESL-EDRSVDVREALRELLKN 472 (823)
T ss_pred Hhe-e--------cHHHHHHHHHHH-HhcCHHHHHHHHHHHHh
Confidence 532 1 112345666778 58888888877776643
No 105
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.06 E-value=0.28 Score=54.74 Aligned_cols=412 Identities=15% Similarity=0.150 Sum_probs=211.6
Q ss_pred CHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHh
Q 008257 49 PQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLF 127 (572)
Q Consensus 49 ~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~ 127 (572)
.+.++..++.-+++++..-.. .....+. |.++++++.+..-+++.|...+.++...-.... =+..-..+.+++...
T Consensus 250 ~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~ 326 (759)
T KOG0211|consen 250 TPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVE 326 (759)
T ss_pred chhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhc
Confidence 344455555555554442211 3333455 777777777767778888887777775211110 122335566666665
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccH
Q 008257 128 TVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVL 207 (572)
Q Consensus 128 s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~ 207 (572)
.+ .-.++...+....-+...= + ........+++...+++....+.+...+.-...++..-+.
T Consensus 327 d~-----~~~v~~~~~~~~~~L~~~~--------~---~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~-- 388 (759)
T KOG0211|consen 327 DG-----SWRVSYMVADKFSELSSAV--------G---PSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNA-- 388 (759)
T ss_pred Ch-----hHHHHHHHhhhhhhHHHHh--------c---cccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCc--
Confidence 43 2344444444444443210 0 0112233467777777766666665555444444433211
Q ss_pred HHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHH
Q 008257 208 SVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLL 287 (572)
Q Consensus 208 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L 287 (572)
.....+.....+|.+-.+..+.++.++...+.....++.-.+.+ +.+. -.+|.++..+..... .++..-...+
T Consensus 389 ~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~--~ti~---~llp~~~~~l~de~~--~V~lnli~~l 461 (759)
T KOG0211|consen 389 SCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE--RTIS---ELLPLLIGNLKDEDP--IVRLNLIDKL 461 (759)
T ss_pred ccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC--cCcc---ccChhhhhhcchhhH--HHHHhhHHHH
Confidence 11223344556788888888888888777665555554322211 0111 244555555555553 5666555444
Q ss_pred hcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHH
Q 008257 288 AELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIE 367 (572)
Q Consensus 288 ~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~ 367 (572)
+.+-...+......+...-+|.++.+-.+. .-.+....+..+..++. ... ..+.+.-.-+.+..
T Consensus 462 s~~~~v~~v~g~~~~s~slLp~i~el~~d~----------~wRvr~ail~~ip~la~----q~~--~~~~~~~~~~l~~~ 525 (759)
T KOG0211|consen 462 SLLEEVNDVIGISTVSNSLLPAIVELAEDL----------LWRVRLAILEYIPQLAL----QLG--VEFFDEKLAELLRT 525 (759)
T ss_pred HHHHhccCcccchhhhhhhhhhhhhhccch----------hHHHHHHHHHHHHHHHH----hhh--hHHhhHHHHHHHHh
Confidence 443221222222334445555555554331 11122233333333331 111 11111111122222
Q ss_pred HhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHH
Q 008257 368 LLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEK 447 (572)
Q Consensus 368 lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~ 447 (572)
-|.+. ...+++.|+..+..++..-+.. |. ...-|+.
T Consensus 526 ~l~d~-v~~Ir~~aa~~l~~l~~~~G~~---------------w~----------------------------~~~~i~k 561 (759)
T KOG0211|consen 526 WLPDH-VYSIREAAARNLPALVETFGSE---------------WA----------------------------RLEEIPK 561 (759)
T ss_pred hhhhh-HHHHHHHHHHHhHHHHHHhCcc---------------hh----------------------------HHHhhHH
Confidence 23333 5567877777776665422100 00 1124555
Q ss_pred HHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc--hhhhhh
Q 008257 448 LIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT--DDIAYE 525 (572)
Q Consensus 448 Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~--~~~~~~ 525 (572)
+......++-.++...+.++..|+.-. -..+....-++.+.++. .++.+.+|-+++..|..+... ...+++
T Consensus 562 ~L~~~~q~~y~~R~t~l~si~~la~v~------g~ei~~~~Llp~~~~l~-~D~vanVR~nvak~L~~i~~~L~~~~~~~ 634 (759)
T KOG0211|consen 562 LLAMDLQDNYLVRMTTLFSIHELAEVL------GQEITCEDLLPVFLDLV-KDPVANVRINVAKHLPKILKLLDESVRDE 634 (759)
T ss_pred HHHHhcCcccchhhHHHHHHHHHHHHh------ccHHHHHHHhHHHHHhc-cCCchhhhhhHHHHHHHHHhhcchHHHHH
Confidence 555555556667777777777665321 11233444567788877 588999999999999988854 322222
Q ss_pred hcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257 526 VSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK 560 (572)
Q Consensus 526 ~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~ 560 (572)
. +.+.+..+.++.+.++|-.|..|+..+.-
T Consensus 635 ~-----v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 635 E-----VLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred H-----HHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 2 22577777888888888888887766543
No 106
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.13 Score=50.24 Aligned_cols=277 Identities=12% Similarity=0.112 Sum_probs=164.7
Q ss_pred hcCCCHHHHHHHHHHHHHcCCC-CChhHHHH--HhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHH
Q 008257 226 VEAPQNDLRLASIELIQNLSPH-MGHELADA--LRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQML 302 (572)
Q Consensus 226 L~~~~~~v~~~a~~~L~~Ls~~-~~~~~~~~--i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~ 302 (572)
|..++..++..+++.+.++-.+ +.+.+.+. +... +.++.++..+..+++ ++-.+|...|..++... .-.+.+.
T Consensus 91 LiaddasVKiLackqigcilEdcDtnaVseillvvNa-eilklildcIggedd--eVAkAAiesikrialfp-aaleaiF 166 (524)
T KOG4413|consen 91 LIADDASVKILACKQIGCILEDCDTNAVSEILLVVNA-EILKLILDCIGGEDD--EVAKAAIESIKRIALFP-AALEAIF 166 (524)
T ss_pred ccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhh-hHHHHHHHHHcCCcH--HHHHHHHHHHHHHHhcH-HHHHHhc
Confidence 3456677888888888877643 33333332 2344 889999999998886 88888999999988743 4446777
Q ss_pred hCCChHHHHHH-HhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHH
Q 008257 303 DEGAFGLIFSR-VKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVS 381 (572)
Q Consensus 303 ~~g~l~~Lv~l-L~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~A 381 (572)
+...+..+-.. |... .+.-.+-.....+..+.+. +|+....+...|.+..|..-|+...+..|....
T Consensus 167 eSellDdlhlrnlaak---------cndiaRvRVleLIieifSi---SpesaneckkSGLldlLeaElkGteDtLVianc 234 (524)
T KOG4413|consen 167 ESELLDDLHLRNLAAK---------CNDIARVRVLELIIEIFSI---SPESANECKKSGLLDLLEAELKGTEDTLVIANC 234 (524)
T ss_pred ccccCChHHHhHHHhh---------hhhHHHHHHHHHHHHHHhc---CHHHHhHhhhhhHHHHHHHHhcCCcceeehhhH
Confidence 77777665432 1111 1122223344445555443 788888888999988888777774355555554
Q ss_pred HHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCC--CHhH
Q 008257 382 ATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHT--NEKV 459 (572)
Q Consensus 382 a~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~v 459 (572)
..-...++...- ..-++-+.|.|..+.+++... +|--
T Consensus 235 iElvteLaeteH-----------------------------------------greflaQeglIdlicnIIsGadsdPfe 273 (524)
T KOG4413|consen 235 IELVTELAETEH-----------------------------------------GREFLAQEGLIDLICNIISGADSDPFE 273 (524)
T ss_pred HHHHHHHHHHhh-----------------------------------------hhhhcchhhHHHHHHHHhhCCCCCcHH
Confidence 444445543210 011245678888888888654 4444
Q ss_pred HHHHHHHHHHhhhcCccchhhHHHHHhc--CChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCC--chHH
Q 008257 460 VEASLAALSTVIDDGVDIEQGVMVLCEA--QGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPN--VSTA 535 (572)
Q Consensus 460 ~~~A~~aL~~l~~~~~~~~~~~~~i~~~--g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~--~~~~ 535 (572)
.-.++...+.+.....-.+-.-+.+++. -+|...++++ +..|++.++.|..++..+-.+.+..+-+...+. +...
T Consensus 274 kfralmgfgkffgkeaimdvseeaicealiiaidgsfEmi-EmnDpdaieaAiDalGilGSnteGadlllkTgppaaehl 352 (524)
T KOG4413|consen 274 KFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMI-EMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHL 352 (524)
T ss_pred HHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhh-hcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHH
Confidence 4446666666654321111112223322 1344566777 689999999999999888766665555544433 2222
Q ss_pred HHHHhhcCCchhHHHHHHHHHhhcc
Q 008257 536 LVDAFQHADYRTRQIAERALKHIDK 560 (572)
Q Consensus 536 Lv~ll~~~~~~~~~~Aa~aL~~L~~ 560 (572)
|....+.+-..-++.+-+||+.++.
T Consensus 353 larafdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 353 LARAFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHHhcccccchHHHHHHHHHHhhc
Confidence 3333333333444566667766654
No 107
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.013 Score=62.08 Aligned_cols=239 Identities=15% Similarity=0.154 Sum_probs=134.2
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHH---hcCC--C
Q 008257 218 ATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLL---AELP--E 292 (572)
Q Consensus 218 ~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L---~~L~--~ 292 (572)
+...|..+..+.|..||..|+..|-.|+.+ -.. .+ .+....+++|+.+.+ .++.+|+.++ +|.. .
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg--~kL----~~--~~Y~~A~~~lsD~~e--~VR~aAvqlv~v~gn~~p~~ 268 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEG--FKL----SK--ACYSRAVKHLSDDYE--DVRKAAVQLVSVWGNRCPAP 268 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhccc--ccc----cH--HHHHHHHHHhcchHH--HHHHHHHHHHHHHHhcCCCc
Confidence 344488888889999999999998888753 222 22 245677888887775 8888886654 4443 1
Q ss_pred CcHHHH-HHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhcc
Q 008257 293 RDLGLT-RQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQS 371 (572)
Q Consensus 293 ~~~~~~-~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~ 371 (572)
.+.+.. ..+. ..++..+...+++.. -.++-.|+.+|..+... +.+...+-.+... ..-|+.
T Consensus 269 ~e~e~~e~kl~-D~aF~~vC~~v~D~s----------l~VRV~AaK~lG~~~~v---See~i~QTLdKKl----ms~lRR 330 (823)
T KOG2259|consen 269 LERESEEEKLK-DAAFSSVCRAVRDRS----------LSVRVEAAKALGEFEQV---SEEIIQQTLDKKL----MSRLRR 330 (823)
T ss_pred ccchhhhhhhH-HHHHHHHHHHHhcCc----------eeeeehHHHHhchHHHh---HHHHHHHHHHHHH----hhhhhh
Confidence 111111 1222 245666677776521 11223466666666543 3333333222221 111111
Q ss_pred CCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHh
Q 008257 372 NGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIAL 451 (572)
Q Consensus 372 ~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~l 451 (572)
. .........+. .+. .+++- +.+ . +..|--. ..+...-|+..|+-..+|.=
T Consensus 331 k---r~ahkrpk~l~---s~G-ewSsG---------k~~--~--------advpsee---~d~~~~siI~sGACGA~VhG 381 (823)
T KOG2259|consen 331 K---RTAHKRPKALY---SSG-EWSSG---------KEW--N--------ADVPSEE---DDEEEESIIPSGACGALVHG 381 (823)
T ss_pred h---hhcccchHHHH---hcC-CcccC---------ccc--c--------ccCchhh---ccccccccccccccceeeee
Confidence 1 01111111111 111 01110 000 0 0000000 00112236678888888888
Q ss_pred hcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhh
Q 008257 452 LDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDI 522 (572)
Q Consensus 452 L~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~ 522 (572)
|+..--+|+.+|+..++.|+...+++-. .++..|++++ +...+.++.+|..+|-.|..+-.+
T Consensus 382 lEDEf~EVR~AAV~Sl~~La~ssP~FA~--------~aldfLvDMf-NDE~~~VRL~ai~aL~~Is~~l~i 443 (823)
T KOG2259|consen 382 LEDEFYEVRRAAVASLCSLATSSPGFAV--------RALDFLVDMF-NDEIEVVRLKAIFALTMISVHLAI 443 (823)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCCcHH--------HHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhee
Confidence 8888889999999999999987664321 2568899999 478899999999999988876333
No 108
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.13 Score=52.29 Aligned_cols=267 Identities=13% Similarity=0.113 Sum_probs=159.7
Q ss_pred HHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC------cc-hhH---HHHhhhH-HHHHH
Q 008257 15 AEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN------SD-VKV---LVARTVG-SCLIN 83 (572)
Q Consensus 15 A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~------~~-~k~---~i~~~g~-~~Lv~ 83 (572)
...-++.++.-|+--..+++..+++.|+.+|.+.+.++-+.....|..+.-. .+ ... .+.++++ +.||+
T Consensus 104 ~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvq 183 (536)
T KOG2734|consen 104 IIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQ 183 (536)
T ss_pred HHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHH
Confidence 3445666777788888999999999999999999999988888888887641 11 122 2345566 88887
Q ss_pred hccc---CCH---HHHHHHHHHHHHhhcC-CCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCC
Q 008257 84 IMKS---GNM---QAREAALKALNQISSC-EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDF 156 (572)
Q Consensus 84 lL~s---~~~---~~~~~A~~aL~~Ls~~-~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~ 156 (572)
-+.- +.. ....+++..+-|+... ++....+++.|.+..|+.-+.... ....-+.+|.++|+-+-.++..
T Consensus 184 nveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~---~f~aNk~YasEiLaillq~s~e- 259 (536)
T KOG2734|consen 184 NVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKA---AFDANKQYASEILAILLQNSDE- 259 (536)
T ss_pred HHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhccc---CcchhHHHHHHHHHHHhccCch-
Confidence 6653 222 2356788888998875 556788888898888877554332 2346688899988887654321
Q ss_pred CccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhc---CCC---
Q 008257 157 DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE---APQ--- 230 (572)
Q Consensus 157 ~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~---~~~--- 230 (572)
.+.....-.||..|++-+. ..+
T Consensus 260 ----------------------------------------------------~~~~~~~l~GiD~lL~~la~yk~~dP~~ 287 (536)
T KOG2734|consen 260 ----------------------------------------------------NRKLLGPLDGIDVLLRQLAVYKRHDPAT 287 (536)
T ss_pred ----------------------------------------------------hhhhhcCcccHHHHHhhcchhhccCCCC
Confidence 1222223344444443331 112
Q ss_pred HHHHHHHHHHHHHcCCC--CChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcH--HHHHHHHhCCC
Q 008257 231 NDLRLASIELIQNLSPH--MGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDL--GLTRQMLDEGA 306 (572)
Q Consensus 231 ~~v~~~a~~~L~~Ls~~--~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~--~~~~~l~~~g~ 306 (572)
.+-++.-..++.+||.. .+....+.+.+. ++....-+++... ..+..|+++|-....+++ .++..+++.++
T Consensus 288 ~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~E--GlqLm~Lmlr~Kk---~sr~SalkvLd~am~g~~gt~~C~kfVe~lG 362 (536)
T KOG2734|consen 288 VDEEEMMENLFDCLCSLLMAPANRERFLKGE--GLQLMNLMLREKK---VSRGSALKVLDHAMFGPEGTPNCNKFVEILG 362 (536)
T ss_pred cCHHHHHHHHHHHHHHHhcChhhhhhhhccc--cHHHHHHHHHHHH---HhhhhHHHHHHHHHhCCCchHHHHHHHHHHh
Confidence 23345555555555532 122222234443 4543333344422 566778888877766554 56678999999
Q ss_pred hHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHH
Q 008257 307 FGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARV 342 (572)
Q Consensus 307 l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l 342 (572)
+.++..+......-..+...+....-|.....|+.+
T Consensus 363 LrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl 398 (536)
T KOG2734|consen 363 LRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASL 398 (536)
T ss_pred HHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHH
Confidence 999887665211111111123344455555555544
No 109
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.067 Score=58.09 Aligned_cols=320 Identities=17% Similarity=0.198 Sum_probs=178.2
Q ss_pred CCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHh
Q 008257 6 SENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINI 84 (572)
Q Consensus 6 s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~l 84 (572)
+++|..+..|.+.+..+-. ..+.+. ..+|+.+.++++.+.+|..++.+..++-. .....+...|. +.|-++
T Consensus 97 d~np~iR~lAlrtm~~l~v-----~~i~ey-~~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~l 168 (734)
T KOG1061|consen 97 DPNPLIRALALRTMGCLRV-----DKITEY-LCDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDL 168 (734)
T ss_pred CCCHHHHHHHhhceeeEee-----hHHHHH-HHHHHHHhccCCChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHH
Confidence 3455555555554443332 222222 46899999999999999888887776654 23345566788 999999
Q ss_pred cccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHH-HHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCC
Q 008257 85 MKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVK-DLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGP 163 (572)
Q Consensus 85 L~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~-lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~ 163 (572)
+..+++.+..+|+.+|..+...+.+... .-..+.++. +|..- +....+.-+.+|-+++...+...
T Consensus 169 l~D~~p~VVAnAlaaL~eI~e~~~~~~~---~~l~~~~~~~lL~al-----~ec~EW~qi~IL~~l~~y~p~d~------ 234 (734)
T KOG1061|consen 169 LSDSNPMVVANALAALSEIHESHPSVNL---LELNPQLINKLLEAL-----NECTEWGQIFILDCLAEYVPKDS------ 234 (734)
T ss_pred hcCCCchHHHHHHHHHHHHHHhCCCCCc---ccccHHHHHHHHHHH-----HHhhhhhHHHHHHHHHhcCCCCc------
Confidence 9999999999999999999976543111 112233332 22211 12334455566666665433211
Q ss_pred CccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHH
Q 008257 164 DNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQN 243 (572)
Q Consensus 164 ~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~ 243 (572)
......+..+...|....+.+...+.+.+..+...-. . .........-++|+.++.+.. +++-.|++=+.-
T Consensus 235 ----~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~---~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~l 305 (734)
T KOG1061|consen 235 ----REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLK---Q-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINL 305 (734)
T ss_pred ----hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHH---H-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHH
Confidence 1223455666666666677777777777766654421 1 122223456677888877765 555444332222
Q ss_pred cCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCC
Q 008257 244 LSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETR 323 (572)
Q Consensus 244 Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~ 323 (572)
+-...+ ++ +. ....+-+.+..+++ .++..-+.++..++. +.+..+ +.. . ++.-.+
T Consensus 306 il~~~p-~~---~~-----~~~~~Ff~kynDPi-YvK~eKleil~~la~-~~nl~q-vl~--------E-l~eYat---- 360 (734)
T KOG1061|consen 306 ILQKRP-EI---LK-----VEIKVFFCKYNDPI-YVKLEKLEILIELAN-DANLAQ-VLA--------E-LKEYAT---- 360 (734)
T ss_pred HHHhCh-HH---HH-----hHhHeeeeecCCch-hhHHHHHHHHHHHhh-HhHHHH-HHH--------H-HHHhhh----
Confidence 212211 11 11 11112223344432 455555555555554 333322 211 1 221100
Q ss_pred CCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhcc
Q 008257 324 GSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESK 393 (572)
Q Consensus 324 ~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~ 393 (572)
..+.++...++.++.+++... . + ..++++.|.++++.. .+-+...+...+..+-+.-+
T Consensus 361 --evD~~fvrkaIraig~~aik~---e---~---~~~cv~~lLell~~~-~~yvvqE~~vvi~dilRkyP 418 (734)
T KOG1061|consen 361 --EVDVDFVRKAVRAIGRLAIKA---E---Q---SNDCVSILLELLETK-VDYVVQEAIVVIRDILRKYP 418 (734)
T ss_pred --hhCHHHHHHHHHHhhhhhhhh---h---h---hhhhHHHHHHHHhhc-ccceeeehhHHHHhhhhcCC
Confidence 124556677999999887431 1 1 168899999999977 55566667777777665443
No 110
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.94 E-value=0.068 Score=52.04 Aligned_cols=256 Identities=13% Similarity=0.081 Sum_probs=146.3
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHh
Q 008257 224 QFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLD 303 (572)
Q Consensus 224 ~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~ 303 (572)
.+++.-++-.+--|+.++.++.-.. +-+..+..+..+-..+++++++.-....+|...+-+++-++. ++++.+.+-+
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~--e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K 232 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDV--EKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDK 232 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 3444444446777777888776431 112222222134556788887654323678888888888887 6666543322
Q ss_pred -CCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccC--CcHHHHHH
Q 008257 304 -EGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN--GLDKVQMV 380 (572)
Q Consensus 304 -~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~vk~~ 380 (572)
-.-+.-|+.+++.. ..+.+..-+.+.+.++... ...+.+....-.|-+.+-|++|..+ .++++...
T Consensus 233 ~~dli~dli~iVk~~---------~keKV~Rlc~~Iv~n~~dK--~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~d 301 (432)
T COG5231 233 MDDLINDLIAIVKER---------AKEKVLRLCCGIVANVLDK--SPKGYIFSPLLLNDISKCVQVLLERKYSDEELVID 301 (432)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhcc--cccchhhhhHhhcchHHHHHHHHhcCCChHHHHHH
Confidence 24566667777652 2334555677788887742 1224444444444334445555543 25555443
Q ss_pred HHHHHHHhhhhccccC-----------CCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhh--ccchHH
Q 008257 381 SATALENLSLESKNLT-----------KLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLE--GHAVEK 447 (572)
Q Consensus 381 Aa~aL~~ls~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~--~g~i~~ 447 (572)
--..=..+-.+...++ ....+.+++- + .+.|+ .|.-.+.+ -..+..
T Consensus 302 i~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~-~-------------------~dFWs-~N~d~l~kdny~i~k~ 360 (432)
T COG5231 302 IERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHH-K-------------------KDFWS-TNLDMLIKDNYEIVKV 360 (432)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCccc-c-------------------cCchh-hhHHHHhhhhHHHHHH
Confidence 3332222322222221 1111111111 1 11221 11111221 125678
Q ss_pred HHHhhcCCCHh-HHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHc
Q 008257 448 LIALLDHTNEK-VVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILR 518 (572)
Q Consensus 448 Lv~lL~~~~~~-v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~ 518 (572)
|.++|.++++. ....|+.=++.++...+ ++...+.+.||-..+.+++ +|+|+++|-.|..+++.+..
T Consensus 361 L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P---E~~~vl~Kyg~k~~im~L~-nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 361 LKKYLQSNNPNTWICVACSDIFQLVRASP---EINAVLSKYGVKEIIMNLI-NHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHhcCCCCceEeeeHhhHHHHHHhCc---hHHHHHHHhhhHHHHHHHh-cCCCchhhHHHHHHHHHHHh
Confidence 99999998887 45667777777775543 6678899999999999999 69999999999999988763
No 111
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.78 E-value=0.0045 Score=44.62 Aligned_cols=54 Identities=22% Similarity=0.171 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhccCcchh-HHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHh
Q 008257 50 QETKLSLAAFLGDLALNSDVK-VLVARTVGSCLINIMKSGNMQAREAALKALNQI 103 (572)
Q Consensus 50 ~~~~~~aa~~L~~l~~~~~~k-~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~L 103 (572)
+.+|..|+++|++++...... ........|.|+.+|++++..+|..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 467899999999987633322 223333449999999999999999999999875
No 112
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.0054 Score=63.33 Aligned_cols=162 Identities=10% Similarity=0.055 Sum_probs=114.0
Q ss_pred HHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCc-HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 008257 72 LVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPS-AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANV 149 (572)
Q Consensus 72 ~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~-~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nl 149 (572)
-+.+..+ ++|+++|+.++..+.--+..+++|+...=+| +..+.+.|.|..|+.++.+.+ ..+|.++.|+|..+
T Consensus 426 gL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD-----daLqans~wvlrHl 500 (743)
T COG5369 426 GLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD-----DALQANSEWVLRHL 500 (743)
T ss_pred hccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch-----hhhhhcchhhhhhh
Confidence 3445567 9999999987767777888999998875455 788899999999999998753 68999999999999
Q ss_pred HhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcC----ChHHHHHH
Q 008257 150 VNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSG----ATISLVQF 225 (572)
Q Consensus 150 a~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g----~i~~Lv~l 225 (572)
.-++...+++ .+.....+..++.+.+.++..+|.+++..|.|++.+..-+++.+....... -...|++-
T Consensus 501 myncq~~ekf-------~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k 573 (743)
T COG5369 501 MYNCQKNEKF-------KFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDK 573 (743)
T ss_pred hhcCcchhhh-------hhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHH
Confidence 8776543322 234456688999999999999999999999999886432223333222211 23345555
Q ss_pred hcCCCHHHHHHHHHHHHHcC
Q 008257 226 VEAPQNDLRLASIELIQNLS 245 (572)
Q Consensus 226 L~~~~~~v~~~a~~~L~~Ls 245 (572)
++..+|-..+..+..|-+++
T Consensus 574 ~e~~np~~i~~~~yilv~~a 593 (743)
T COG5369 574 YEENNPMEILEGCYILVRNA 593 (743)
T ss_pred HHhcCchhhhhhHHHHHHHH
Confidence 56666533333344444444
No 113
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.65 E-value=0.0093 Score=48.67 Aligned_cols=66 Identities=15% Similarity=0.163 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHHcCCCCChhHHHHHh
Q 008257 188 IECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP--QNDLRLASIELIQNLSPHMGHELADALR 257 (572)
Q Consensus 188 ~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~Ls~~~~~~~~~~i~ 257 (572)
++...++.|.++|..+. .++..+++.||||.++.....+ +|-+|++|.+++++|+.+. .+.++.|.
T Consensus 2 ~K~~lvrlianl~~~~~---~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n-~eNQ~~I~ 69 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNK---EVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGN-PENQEFIA 69 (102)
T ss_pred cHHHHHHHHHHHHhCCH---HHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC-HHHHHHHH
Confidence 35677888999998763 6889999999999999988654 5889999999999999874 34333443
No 114
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.66 Score=47.43 Aligned_cols=266 Identities=14% Similarity=0.199 Sum_probs=162.8
Q ss_pred HHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCC----CCh----hHHHHHhcccCChhh
Q 008257 194 QVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH----MGH----ELADALRGAVGQLGS 265 (572)
Q Consensus 194 ~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~----~~~----~~~~~i~~~~g~l~~ 265 (572)
+-+..++.-| +.-..+.+-.+++.|++||.+.+.++-...+.+|..|++. ++. ...+++.+. +.++.
T Consensus 106 Q~mhvlAt~P----dLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg-~vlaL 180 (536)
T KOG2734|consen 106 QEMHVLATMP----DLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDG-QVLAL 180 (536)
T ss_pred HHHHhhhcCh----HHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhc-cHHHH
Confidence 3344455554 3455778999999999999999999999999999999853 111 344566665 77888
Q ss_pred HHhhhccCCC-C---hHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHH
Q 008257 266 LIRVISENVG-I---SKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLAR 341 (572)
Q Consensus 266 Lv~lL~~~~~-~---~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~ 341 (572)
||.-+..=+. . ..-...+.+++.|+..-.+.+.+.+++.|.+.+|+.-+... +... .-...+...|.-
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k--~~f~------aNk~YasEiLai 252 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGK--AAFD------ANKQYASEILAI 252 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcc--cCcc------hhHHHHHHHHHH
Confidence 8887753332 1 12345677888999888889989999999999988876642 1111 113345555555
Q ss_pred HhccCCCChHHHHHHHHcCchHHHHHHhcc-----CCcHHHHH---HHHHHHHHhhhhccccCCCCCCCCCCCCcccccc
Q 008257 342 VTFVLSDEPDAIALCCEHNLAALFIELLQS-----NGLDKVQM---VSATALENLSLESKNLTKLPELPPSGFCASIFPC 413 (572)
Q Consensus 342 l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~vk~---~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~ 413 (572)
+-. ++.+++..+-..+++..+++-+.. |.+..-++ +--.+|+.+....
T Consensus 253 llq---~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~--------------------- 308 (536)
T KOG2734|consen 253 LLQ---NSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAP--------------------- 308 (536)
T ss_pred Hhc---cCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcCh---------------------
Confidence 553 244477778888888888766542 11111121 2222222221111
Q ss_pred ccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHH
Q 008257 414 FSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPI 493 (572)
Q Consensus 414 ~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L 493 (572)
.+.-..+...|++...=+++. ...-...|+.+|-.....++ ....+...++.+|.+.+
T Consensus 309 --------------------~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~-gt~~C~kfVe~lGLrti 366 (536)
T KOG2734|consen 309 --------------------ANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPE-GTPNCNKFVEILGLRTI 366 (536)
T ss_pred --------------------hhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCC-chHHHHHHHHHHhHHHH
Confidence 111123455677765555554 33445667788877775543 34567888899999987
Q ss_pred HHHHhhcCC---------HHHHHHHHHHHHHHHc
Q 008257 494 LDVLLEKRT---------ENLQRRAVWVVERILR 518 (572)
Q Consensus 494 ~~lL~~~~~---------~~~~~~a~~~l~~l~~ 518 (572)
..+.-..+. .+.-+.-..+|+.++.
T Consensus 367 F~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 367 FPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 766522222 2233445555655553
No 115
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.49 E-value=0.0068 Score=43.66 Aligned_cols=54 Identities=28% Similarity=0.242 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHh
Q 008257 330 PFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENL 388 (572)
Q Consensus 330 ~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~l 388 (572)
.+++.++++|.+++.. .++..+. ....++|.|+.+|+++ ++.||..|++||++|
T Consensus 2 ~vR~~A~~aLg~l~~~---~~~~~~~-~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEG---CPELLQP-YLPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTT---THHHHHH-HHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcc---cHHHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 3578899999988753 4444443 4557889999999998 889999999999875
No 116
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.44 E-value=0.87 Score=48.06 Aligned_cols=325 Identities=13% Similarity=0.110 Sum_probs=154.9
Q ss_pred CCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHH-HHHhcc--CcchhHHHHhhhHHHHHH
Q 008257 7 ENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAF-LGDLAL--NSDVKVLVARTVGSCLIN 83 (572)
Q Consensus 7 ~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~-L~~l~~--~~~~k~~i~~~g~~~Lv~ 83 (572)
.++.-+-+|++.|-.+-..|.. +.-.|++.+.... .++-.-|.. |.+... -.++.+... .-.|.|-.
T Consensus 202 ~~~isqYHalGlLyq~kr~dkm--------a~lklv~hf~~n~-smknq~a~V~lvr~~~~ll~~n~q~~~-q~rpfL~~ 271 (898)
T COG5240 202 GNPISQYHALGLLYQSKRTDKM--------AQLKLVEHFRGNA-SMKNQLAGVLLVRATVELLKENSQALL-QLRPFLNS 271 (898)
T ss_pred CChHHHHHHHHHHHHHhcccHH--------HHHHHHHHhhccc-ccccchhheehHHHHHHHHHhChHHHH-HHHHHHHH
Confidence 3456677777777666544321 1224555554333 333222222 221111 122222221 11277788
Q ss_pred hcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCC
Q 008257 84 IMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGP 163 (572)
Q Consensus 84 lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~ 163 (572)
+|++...-++..+++++..++...-. ...+ .-.|..|-.+|+++. ...|-.|..+|-.|++..+ ++..+
T Consensus 272 wls~k~emV~lE~Ar~v~~~~~~nv~-~~~~-~~~vs~L~~fL~s~r-----v~~rFsA~Riln~lam~~P--~kv~v-- 340 (898)
T COG5240 272 WLSDKFEMVFLEAARAVCALSEENVG-SQFV-DQTVSSLRTFLKSTR-----VVLRFSAMRILNQLAMKYP--QKVSV-- 340 (898)
T ss_pred HhcCcchhhhHHHHHHHHHHHHhccC-HHHH-HHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHhhCC--ceeee--
Confidence 88887788899999999988853311 1111 235677777888753 6789999999999987543 22111
Q ss_pred CccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHH
Q 008257 164 DNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQN 243 (572)
Q Consensus 164 ~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~ 243 (572)
+=+.+=.|+.+.+..+-..|+.+|..-.... .+-+.| .-|+.++.=+..+ -+.-+..+++.
T Consensus 341 ---------cN~evEsLIsd~Nr~IstyAITtLLKTGt~e----~idrLv---~~I~sfvhD~SD~---FKiI~ida~rs 401 (898)
T COG5240 341 ---------CNKEVESLISDENRTISTYAITTLLKTGTEE----TIDRLV---NLIPSFVHDMSDG---FKIIAIDALRS 401 (898)
T ss_pred ---------cChhHHHHhhcccccchHHHHHHHHHcCchh----hHHHHH---HHHHHHHHhhccC---ceEEeHHHHHH
Confidence 1122333444455555556666655443331 111111 1233333332222 22233333333
Q ss_pred cCCCCChhH---HH----HHhcccC-------ChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHH
Q 008257 244 LSPHMGHEL---AD----ALRGAVG-------QLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGL 309 (572)
Q Consensus 244 Ls~~~~~~~---~~----~i~~~~g-------~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~ 309 (572)
|+-..+++- -. .+... | .+..+.++++... +-++.|+..|+.... |-+..+. .-.
T Consensus 402 Lsl~Fp~k~~s~l~FL~~~L~~e-Gg~eFK~~~Vdaisd~~~~~p---~skEraLe~LC~fIE-Dcey~~I------~vr 470 (898)
T COG5240 402 LSLLFPSKKLSYLDFLGSSLLQE-GGLEFKKYMVDAISDAMENDP---DSKERALEVLCTFIE-DCEYHQI------TVR 470 (898)
T ss_pred HHhhCcHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHhhCc---hHHHHHHHHHHHHHh-hcchhHH------HHH
Confidence 332222110 00 01111 1 2333333333322 223333333333222 1111111 112
Q ss_pred HHHHHhhhccCCCCCCc-----------chhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHH
Q 008257 310 IFSRVKSIQLGETRGSR-----------FVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQ 378 (572)
Q Consensus 310 Lv~lL~~~~~~~~~~~~-----------~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk 378 (572)
++.+|....+....+.+ ++.-++.+|+.+|.+|+-.. +|+-..+. +...|-.+|++. +++++
T Consensus 471 IL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~-~d~~~~~s-----v~~~lkRclnD~-DdeVR 543 (898)
T COG5240 471 ILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNI-SDVVSPQS-----VENALKRCLNDQ-DDEVR 543 (898)
T ss_pred HHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCc-cccccHHH-----HHHHHHHHhhcc-cHHHH
Confidence 23333221100011111 33445667888998887432 24444443 346678889998 99999
Q ss_pred HHHHHHHHHhh
Q 008257 379 MVSATALENLS 389 (572)
Q Consensus 379 ~~Aa~aL~~ls 389 (572)
..|+.+|.++-
T Consensus 544 drAsf~l~~~~ 554 (898)
T COG5240 544 DRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHhhh
Confidence 99999999884
No 117
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.37 E-value=0.7 Score=48.71 Aligned_cols=280 Identities=14% Similarity=0.134 Sum_probs=143.2
Q ss_pred cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCC
Q 008257 183 NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQ 262 (572)
Q Consensus 183 ~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~ 262 (572)
+...-++..++++.+.++..+-+.+.. ...+..|-.+|.+.....|-.|.++|..|+...++.+ ..+.
T Consensus 275 ~k~emV~lE~Ar~v~~~~~~nv~~~~~------~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv--~vcN---- 342 (898)
T COG5240 275 DKFEMVFLEAARAVCALSEENVGSQFV------DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV--SVCN---- 342 (898)
T ss_pred CcchhhhHHHHHHHHHHHHhccCHHHH------HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee--eecC----
Confidence 344567778888888776544221111 2357778888888888889999999998885544332 1121
Q ss_pred hhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHH
Q 008257 263 LGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARV 342 (572)
Q Consensus 263 l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l 342 (572)
+.+=.+....+. .+..-|+.+|-. .+..+....++ ..+.+++.+-..+ . +--++.++..+
T Consensus 343 -~evEsLIsd~Nr--~IstyAITtLLK--TGt~e~idrLv-----~~I~sfvhD~SD~-F---------KiI~ida~rsL 402 (898)
T COG5240 343 -KEVESLISDENR--TISTYAITTLLK--TGTEETIDRLV-----NLIPSFVHDMSDG-F---------KIIAIDALRSL 402 (898)
T ss_pred -hhHHHHhhcccc--cchHHHHHHHHH--cCchhhHHHHH-----HHHHHHHHhhccC-c---------eEEeHHHHHHH
Confidence 222233344443 455555555433 23333333332 2333333332111 1 11123333333
Q ss_pred hccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCcccc
Q 008257 343 TFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITG 422 (572)
Q Consensus 343 ~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (572)
+-. -|.-+..+ +..|...|...+..+.|+.+..|+..+....+..
T Consensus 403 sl~---Fp~k~~s~-----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s--------------------------- 447 (898)
T COG5240 403 SLL---FPSKKLSY-----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS--------------------------- 447 (898)
T ss_pred Hhh---CcHHHHHH-----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH---------------------------
Confidence 321 33333332 4555555555447778888888877665543311
Q ss_pred ccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCC
Q 008257 423 LCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRT 502 (572)
Q Consensus 423 ~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~ 502 (572)
+..+++.|+..++. .+-.+-+++.|+.|...++...+-.. =|.++..-+ --.+
T Consensus 448 ------------------kEraLe~LC~fIED--cey~~I~vrIL~iLG~EgP~a~~P~~------yvrhIyNR~-iLEN 500 (898)
T COG5240 448 ------------------KERALEVLCTFIED--CEYHQITVRILGILGREGPRAKTPGK------YVRHIYNRL-ILEN 500 (898)
T ss_pred ------------------HHHHHHHHHHHHhh--cchhHHHHHHHHHhcccCCCCCCcch------HHHHHHHHH-HHhh
Confidence 12244555555542 23344455666666554441111000 123333333 1356
Q ss_pred HHHHHHHHHHHHHHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhc
Q 008257 503 ENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHID 559 (572)
Q Consensus 503 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~ 559 (572)
.-++..|+.+|.++.-+.+. .+.. ..+...|.+.+.+.|.++|.+|+-+|.++.
T Consensus 501 ~ivRsaAv~aLskf~ln~~d--~~~~-~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 501 NIVRSAAVQALSKFALNISD--VVSP-QSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hHHHHHHHHHHHHhccCccc--cccH-HHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 66777777777776633110 1110 112236777788888888888888888775
No 118
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.34 E-value=0.015 Score=47.49 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHc
Q 008257 280 QAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEH 359 (572)
Q Consensus 280 ~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~ 359 (572)
+...+.+|+|++..++.++..+.+.|+||.+++.-.-. ..++-++|.++.++-+++.. |+++++.+.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD--------~~nP~irEwai~aiRnL~e~---n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNID--------DHNPFIREWAIFAIRNLCEG---NPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCC--------cccHHHHHHHHHHHHHHHhC---CHHHHHHHHhc
Confidence 45567899999999999999999999999999885431 14778999999999999984 99999887664
Q ss_pred C
Q 008257 360 N 360 (572)
Q Consensus 360 g 360 (572)
-
T Consensus 72 ~ 72 (102)
T PF09759_consen 72 E 72 (102)
T ss_pred c
Confidence 3
No 119
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.18 E-value=0.012 Score=49.28 Aligned_cols=71 Identities=11% Similarity=0.282 Sum_probs=60.0
Q ss_pred chHHHHHhh-cCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHc
Q 008257 444 AVEKLIALL-DHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILR 518 (572)
Q Consensus 444 ~i~~Lv~lL-~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~ 518 (572)
.+..|+++| .+.++.+...|+.=|+.++...+ .+...+.+.|+-..+.+++ +|+|++++..|+.+++++..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p---~gr~ii~~lg~K~~vM~Lm-~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYP---NGRNIIEKLGAKERVMELM-NHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-G---GGHHHHHHHSHHHHHHHHT-S-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHCh---hHHHHHHhcChHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 778999999 45678888889999999998754 6778888888888899999 69999999999999998873
No 120
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=3.3 Score=47.11 Aligned_cols=217 Identities=15% Similarity=0.098 Sum_probs=131.1
Q ss_pred hH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257 77 VG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD 155 (572)
Q Consensus 77 g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~ 155 (572)
++ ..|...|++.+..++..|++-+..++...+ + .++ --+|...++++... .+...-.-|+-+|+.|+..+--
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp-~-~La-d~vi~svid~~~p~----e~~~aWHgacLaLAELA~rGlL 413 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP-P-ELA-DQVIGSVIDLFNPA----EDDSAWHGACLALAELALRGLL 413 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc-H-HHH-HHHHHHHHHhcCcC----CchhHHHHHHHHHHHHHhcCCc
Confidence 44 889999999999999999999999998655 2 222 12445555655432 2245566888899999874321
Q ss_pred CCccccCCCccccchhhhHHHHHHHHh--------cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhc
Q 008257 156 FDSITVGPDNQTLVSEDIVHNLLHLIS--------NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE 227 (572)
Q Consensus 156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~--------~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~ 227 (572)
... .-+.++|.++.-|. +.+..++..|+-+++.++...+. ..+.. +.+.=.--.|..-+-
T Consensus 414 lps----------~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~-~~l~p-~l~~L~s~LL~~AlF 481 (1133)
T KOG1943|consen 414 LPS----------LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSP-SDLKP-VLQSLASALLIVALF 481 (1133)
T ss_pred chH----------HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCCh-hhhhH-HHHHHHHHHHHHHhc
Confidence 110 12457777776664 24556888888888888765432 11211 111111112333344
Q ss_pred CCCHHHHHHHHHHHHHcCCC-C----Chh-------------------HHHHHhcccCChhhHHhhhccCCC--C-hHHH
Q 008257 228 APQNDLRLASIELIQNLSPH-M----GHE-------------------LADALRGAVGQLGSLIRVISENVG--I-SKEQ 280 (572)
Q Consensus 228 ~~~~~v~~~a~~~L~~Ls~~-~----~~~-------------------~~~~i~~~~g~l~~Lv~lL~~~~~--~-~~~~ 280 (572)
+++...|..|..+|...... . +-+ +...+.+.+|...++++-|-..+- + ..++
T Consensus 482 DrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~ir 561 (1133)
T KOG1943|consen 482 DREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIR 561 (1133)
T ss_pred CchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHH
Confidence 55667888888888766532 1 111 112233333666677766655431 1 4789
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhh
Q 008257 281 AAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS 316 (572)
Q Consensus 281 ~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~ 316 (572)
..|++.|.+|+...++. ...+.+|+|+.....
T Consensus 562 elaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls 593 (1133)
T KOG1943|consen 562 ELAAYALHKLSLTEPKY----LADYVLPPLLDSTLS 593 (1133)
T ss_pred HHHHHHHHHHHHhhHHh----hcccchhhhhhhhcC
Confidence 99999999987755444 456778888876543
No 121
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.10 E-value=0.21 Score=47.74 Aligned_cols=179 Identities=20% Similarity=0.185 Sum_probs=104.4
Q ss_pred CCCHHHHHHHHHHHHhhccCc---chHHHHHHc--CCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchh-HHHHhhhHH
Q 008257 6 SENLLTVEKAEKTLANLEKCE---NNVRQMAEN--GRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVK-VLVARTVGS 79 (572)
Q Consensus 6 s~~~~~~~~A~~~L~~L~~~~---~n~~~i~~~--g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k-~~i~~~g~~ 79 (572)
+.|=..+..|..-|..+.... .+...+.+. ..+..++..+.+....+-..|..++..++..-... ....+.-+|
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~ 97 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLP 97 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 345567777888888776522 333333222 45667777777666667778888888887632222 222333349
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCcc
Q 008257 80 CLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSI 159 (572)
Q Consensus 80 ~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~ 159 (572)
+|++.+.+....++..|..+|..+...-.....+ .++.+...+.+. ++.+|..++..+..+........
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~K-----n~~vR~~~~~~l~~~l~~~~~~~-- 166 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSK-----NPQVREECAEWLAIILEKWGSDS-- 166 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S------HHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHccchH--
Confidence 9999999999999999999999999865411111 134444445443 48899999999999876432000
Q ss_pred ccCCCccccch----hhhHHHHHHHHhcCChhHHHHHHHHHHHccC
Q 008257 160 TVGPDNQTLVS----EDIVHNLLHLISNTGPTIECKLLQVLVGLTS 201 (572)
Q Consensus 160 ~~~~~~~~l~~----~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~ 201 (572)
..+.. +..++.+...+.+++++++..|-.++..+.+
T Consensus 167 ------~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 167 ------SVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp ------GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred ------hhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 12222 4477788888889999999988888776643
No 122
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.09 E-value=0.28 Score=43.48 Aligned_cols=125 Identities=14% Similarity=0.233 Sum_probs=93.5
Q ss_pred HHHHHHcCChHHHHHHHhccCC-CCCCcchHHHHHHHHHHHHhcCC-CCCccccCCCccccchhhhHHHHHHHHhcC--C
Q 008257 110 AKVLIHAGILPPLVKDLFTVGS-NHLPMRLKEVSATILANVVNSGH-DFDSITVGPDNQTLVSEDIVHNLLHLISNT--G 185 (572)
Q Consensus 110 ~~~iv~~G~i~~Lv~lL~s~~~-~~~~~~~~~~aa~~L~nla~~~~-~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~--~ 185 (572)
..+.+..||++.|++++.++.. .....+.-..+..++..|..++. +|+ ..+..+|...+...+.. +
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd----------~l~~~FI~Kia~~Vn~~~~d 73 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD----------TLSDSFIKKIASYVNSSAMD 73 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh----------hccHHHHHHHHHHHcccccc
Confidence 4567899999999999987531 00012445567777777777654 564 24567888888888753 5
Q ss_pred hhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 008257 186 PTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH 247 (572)
Q Consensus 186 ~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~ 247 (572)
+.+...++..|-++..++. .....+.+.=-++.|+.+|+..++++|.+|..++-.|-..
T Consensus 74 ~~i~q~sLaILEs~Vl~S~---~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 74 ASILQRSLAILESIVLNSP---KLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLK 132 (160)
T ss_pred chHHHHHHHHHHHHHhCCH---HHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 7889999999999988764 3445566677899999999999999999999998887644
No 123
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.99 E-value=0.31 Score=55.56 Aligned_cols=285 Identities=15% Similarity=0.120 Sum_probs=147.7
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcC---CCCC
Q 008257 174 VHNLLHLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLS---PHMG 249 (572)
Q Consensus 174 i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls---~~~~ 249 (572)
|+.+...++. ...+.+..|+..|..++..-.. +.+ -...+|.++.+++.+..+||..|+.+|..+- +.-+
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~ 497 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVK----LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIP 497 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHH----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCC
Confidence 4444455543 4567788999999999886543 222 2457999999999999999999998877653 2222
Q ss_pred hhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhcc-CCCCCCcch
Q 008257 250 HELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQL-GETRGSRFV 328 (572)
Q Consensus 250 ~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~-~~~~~~~~~ 328 (572)
..-+..+.+ -.+|.|-.++...+. ..++.+=+..|+.|+..-.. |.+.+---....++.+..+ +..+..
T Consensus 498 ~~daniF~e--YlfP~L~~l~~d~~~-~~vRiayAsnla~LA~tA~r----Fle~~q~~~~~g~~n~~nset~~~~~--- 567 (1431)
T KOG1240|consen 498 PSDANIFPE--YLFPHLNHLLNDSSA-QIVRIAYASNLAQLAKTAYR----FLELTQELRQAGMLNDPNSETAPEQN--- 567 (1431)
T ss_pred cccchhhHh--hhhhhhHhhhccCcc-ceehhhHHhhHHHHHHHHHH----HHHHHHHHHhcccccCcccccccccc---
Confidence 111122344 578888888877443 25666555666666542111 1111111111111111100 000000
Q ss_pred hhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhh---hccccCCCCCCCCCC
Q 008257 329 TPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSL---ESKNLTKLPELPPSG 405 (572)
Q Consensus 329 ~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~---~~~~~~~~~~~~~~~ 405 (572)
.+.+.++ + -.++-..++.||..+ .+-||+.-...|..|+. .....+-+.
T Consensus 568 -------------------~~~~~~~-L-~~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk~ksND~iL------ 619 (1431)
T KOG1240|consen 568 -------------------YNTELQA-L-HHTVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGKEKSNDVIL------ 619 (1431)
T ss_pred -------------------cchHHHH-H-HHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhhcccccchH------
Confidence 0111111 0 112223344455554 44555544444333321 111111000
Q ss_pred CCccccccccCCCc---c-------ccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc
Q 008257 406 FCASIFPCFSKQPV---I-------TGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV 475 (572)
Q Consensus 406 ~~~~~~~~~~~~~~---~-------~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~ 475 (572)
..+..|..+.+ + ...|...+- .=++.+.+|.|.+-|.++.+.|...|+++|..|...+.
T Consensus 620 ---shLiTfLNDkDw~LR~aFfdsI~gvsi~VG~--------rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l 688 (1431)
T KOG1240|consen 620 ---SHLITFLNDKDWRLRGAFFDSIVGVSIFVGW--------RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL 688 (1431)
T ss_pred ---HHHHHHhcCccHHHHHHHHhhccceEEEEee--------eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc
Confidence 00000000000 0 011111110 01367788889999999999999999999999998764
Q ss_pred cchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257 476 DIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT 519 (572)
Q Consensus 476 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~ 519 (572)
-.+.....|.+ -..-+| -|++.=++..++.+|..+.+.
T Consensus 689 l~K~~v~~i~~-----~v~PlL-~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 689 LRKPAVKDILQ-----DVLPLL-CHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred cchHHHHHHHH-----hhhhhe-eCchHHHHHHHHHHHHHHHhh
Confidence 22222223322 233456 499999999999999877754
No 124
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=1.8 Score=47.26 Aligned_cols=319 Identities=13% Similarity=0.169 Sum_probs=176.8
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHH-HHhccCCCCCCcchHHHHHHHHHHHHhcCCCCC
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVK-DLFTVGSNHLPMRLKEVSATILANVVNSGHDFD 157 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~-lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~ 157 (572)
|.+-+.|.+.+.-+|++|..|+..+-.+-+ .++ --.|-|+. .|... .++..|++|.-.|...-.
T Consensus 137 p~IracleHrhsYVRrNAilaifsIyk~~~---~L~--pDapeLi~~fL~~e----~DpsCkRNAFi~L~~~D~------ 201 (948)
T KOG1058|consen 137 PSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLI--PDAPELIESFLLTE----QDPSCKRNAFLMLFTTDP------ 201 (948)
T ss_pred HHHHHHHhCcchhhhhhhheeehhHHhhhh---hhc--CChHHHHHHHHHhc----cCchhHHHHHHHHHhcCH------
Confidence 777788999999999999999988876411 111 11233443 44332 347788888877765521
Q ss_pred ccccCCCccccchhhhHHHHHHHHh---cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHH
Q 008257 158 SITVGPDNQTLVSEDIVHNLLHLIS---NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLR 234 (572)
Q Consensus 158 ~~~~~~~~~~l~~~~~i~~Lv~lL~---~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~ 234 (572)
+.++..|...+. +-++..|.-.+..++..|....+ . +..-|..+..+|.+.++.++
T Consensus 202 -------------ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~----~----~~~~i~~i~~lL~stssaV~ 260 (948)
T KOG1058|consen 202 -------------ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA----E----KARYIRCIYNLLSSTSSAVI 260 (948)
T ss_pred -------------HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH----H----hhHHHHHHHHHHhcCCchhh
Confidence 234444444443 22456777777777777763321 1 23468889999999998999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHH
Q 008257 235 LASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRV 314 (572)
Q Consensus 235 ~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL 314 (572)
-.|+..|..|+... . .+.. +...+++++...++. .++..-.--|..+...+..+-+ |.+--++.+|
T Consensus 261 fEaa~tlv~lS~~p--~---alk~---Aa~~~i~l~~kesdn-nvklIvldrl~~l~~~~~~il~-----~l~mDvLrvL 326 (948)
T KOG1058|consen 261 FEAAGTLVTLSNDP--T---ALKA---AASTYIDLLVKESDN-NVKLIVLDRLSELKALHEKILQ-----GLIMDVLRVL 326 (948)
T ss_pred hhhcceEEEccCCH--H---HHHH---HHHHHHHHHHhccCc-chhhhhHHHHHHHhhhhHHHHH-----HHHHHHHHHc
Confidence 99988888888662 2 2332 345666666544331 2333333333333221211111 2233334444
Q ss_pred hhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccC-----CcHHHHHHHHHHHHHhh
Q 008257 315 KSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN-----GLDKVQMVSATALENLS 389 (572)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~~vk~~Aa~aL~~ls 389 (572)
.. .+-++.+.++.....+..+ .|-+..-.+.+. ++.+.. .+..-|+.-..++...+
T Consensus 327 ss----------~dldvr~Ktldi~ldLvss--rNvediv~~Lkk-------e~~kT~~~e~d~~~~yRqlLiktih~ca 387 (948)
T KOG1058|consen 327 SS----------PDLDVRSKTLDIALDLVSS--RNVEDIVQFLKK-------EVMKTHNEESDDNGKYRQLLIKTIHACA 387 (948)
T ss_pred Cc----------ccccHHHHHHHHHHhhhhh--ccHHHHHHHHHH-------HHHhccccccccchHHHHHHHHHHHHHh
Confidence 43 2455677777776666643 233221111110 111111 01222333334443332
Q ss_pred hhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHH
Q 008257 390 LESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALST 469 (572)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 469 (572)
.. |-=+.+..|+.|++.|.+.++.-....+.-+..
T Consensus 388 v~---------------------------------------------Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE 422 (948)
T KOG1058|consen 388 VK---------------------------------------------FPEVAATVVSLLLDFISDSNEAAASDVLMFVRE 422 (948)
T ss_pred hc---------------------------------------------ChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 10 111245689999999999888766655555554
Q ss_pred hhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257 470 VIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT 519 (572)
Q Consensus 470 l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~ 519 (572)
...- +.+....| |..|++-+..-.+..+.+.|+|++..++..
T Consensus 423 ~iek---~p~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~GeYce~ 464 (948)
T KOG1058|consen 423 AIEK---FPNLRASI-----IEKLLETFPQIRSSKICRGALWILGEYCEG 464 (948)
T ss_pred HHHh---CchHHHHH-----HHHHHHhhhhhcccccchhHHHHHHHHHhh
Confidence 4422 11222233 455666665567788889999999999865
No 125
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.92 E-value=0.86 Score=45.81 Aligned_cols=186 Identities=16% Similarity=0.160 Sum_probs=112.9
Q ss_pred cHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHh--hhH-HHHHHhcccCCHHHHHHHHHHHHHhhcC---CCcHH
Q 008257 38 LQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVAR--TVG-SCLINIMKSGNMQAREAALKALNQISSC---EPSAK 111 (572)
Q Consensus 38 i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~--~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~---~~~~~ 111 (572)
+...+..+.+.....|..+...+.++....-....+.+ .-. ..+.+.++.+..+.+..|++++.-++.. .+...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 34445566667778888888888876543333333332 234 8888999988888888888888888754 23445
Q ss_pred HHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHh---------
Q 008257 112 VLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS--------- 182 (572)
Q Consensus 112 ~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~--------- 182 (572)
.+.+ ...|+|.+.+...+ ..+..|..++.+|+-++....+. ...+..+++.|.
T Consensus 125 ei~~-~~~~~L~~~l~d~s---~~~~~R~~~~~aLai~~fv~~~d--------------~~~~~~~~~~le~if~~~~~~ 186 (309)
T PF05004_consen 125 EIFE-ELKPVLKRILTDSS---ASPKARAACLEALAICTFVGGSD--------------EEETEELMESLESIFLLSILK 186 (309)
T ss_pred HHHH-HHHHHHHHHHhCCc---cchHHHHHHHHHHHHHHHhhcCC--------------hhHHHHHHHHHHHHHHHHhcC
Confidence 5544 57889999887642 23566677777888776532211 112221112211
Q ss_pred c-C---------ChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHc
Q 008257 183 N-T---------GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNL 244 (572)
Q Consensus 183 ~-~---------~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L 244 (572)
. + ++.+...|+.+-.-|...-.. ..+...+ ...+|.|+.+|++++.+||..|-.+|.-|
T Consensus 187 ~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~-~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 187 SDGNAPVVAAEDDAALVAAALSAWALLLTTLPD-SKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred cCCCcccccCCCccHHHHHHHHHHHHHHhcCCH-HHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1 1 234566665444333332211 1233221 34699999999999999999998877655
No 126
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.87 E-value=0.084 Score=46.76 Aligned_cols=117 Identities=13% Similarity=0.198 Sum_probs=87.5
Q ss_pred hhhccchHHHHHhhcCCC------HhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcC-CHHHHHHHHH
Q 008257 439 LLEGHAVEKLIALLDHTN------EKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKR-TENLQRRAVW 511 (572)
Q Consensus 439 l~~~g~i~~Lv~lL~~~~------~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~~~~~~a~~ 511 (572)
.+..||+..|+++++++. .++...++.|+..|..++. ..|...+..-|..++..++... +..+...|..
T Consensus 7 FI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~----vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 7 FISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI----VSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc----CchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 468899999999998866 4788889999999998764 1234455556777888885333 5789999999
Q ss_pred HHHHHHcc-hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257 512 VVERILRT-DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK 560 (572)
Q Consensus 512 ~l~~l~~~-~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~ 560 (572)
+|+++..+ +.....+...-.+ ..|+..|+.++++.+.+|-..+--|..
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~-~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTL-ESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCH-HHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 99999965 4444555554444 489999999999999888766655443
No 127
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.74 E-value=0.28 Score=54.32 Aligned_cols=167 Identities=14% Similarity=0.134 Sum_probs=113.5
Q ss_pred hcCCCHHHHHHHH-HHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhC
Q 008257 226 VEAPQNDLRLASI-ELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDE 304 (572)
Q Consensus 226 L~~~~~~v~~~a~-~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~ 304 (572)
+.+++...|..|+ ++++.++.+++ +. . ..+.+++...+.+. +++.----=+.++++..++..-..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d--ms-s------Lf~dViK~~~trd~--ElKrL~ylYl~~yak~~P~~~lLa--- 93 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED--MS-S------LFPDVIKNVATRDV--ELKRLLYLYLERYAKLKPELALLA--- 93 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC--hH-H------HHHHHHHHHHhcCH--HHHHHHHHHHHHHhccCHHHHHHH---
Confidence 5666666666666 57888876643 32 1 34566676665553 666655555666777666442211
Q ss_pred CChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHH
Q 008257 305 GAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATA 384 (572)
Q Consensus 305 g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~a 384 (572)
+..+.+=+++ .++.++..|+.+++.+- .++.... +++++.++++++ ++.||+.||-|
T Consensus 94 --vNti~kDl~d----------~N~~iR~~AlR~ls~l~-----~~el~~~-----~~~~ik~~l~d~-~ayVRk~Aala 150 (757)
T COG5096 94 --VNTIQKDLQD----------PNEEIRGFALRTLSLLR-----VKELLGN-----IIDPIKKLLTDP-HAYVRKTAALA 150 (757)
T ss_pred --HHHHHhhccC----------CCHHHHHHHHHHHHhcC-----hHHHHHH-----HHHHHHHHccCC-cHHHHHHHHHH
Confidence 2222222222 36778888888887764 5555443 579999999999 99999999999
Q ss_pred HHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHH
Q 008257 385 LENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASL 464 (572)
Q Consensus 385 L~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~ 464 (572)
+..+-.-+++. ..+.|.+.-+..++.+++|.|..+|+
T Consensus 151 v~kly~ld~~l-------------------------------------------~~~~g~~~~l~~l~~D~dP~Vi~nAl 187 (757)
T COG5096 151 VAKLYRLDKDL-------------------------------------------YHELGLIDILKELVADSDPIVIANAL 187 (757)
T ss_pred HHHHHhcCHhh-------------------------------------------hhcccHHHHHHHHhhCCCchHHHHHH
Confidence 99886533211 23678888999999999999999999
Q ss_pred HHHHHhhh
Q 008257 465 AALSTVID 472 (572)
Q Consensus 465 ~aL~~l~~ 472 (572)
.+|..+--
T Consensus 188 ~sl~~i~~ 195 (757)
T COG5096 188 ASLAEIDP 195 (757)
T ss_pred HHHHHhch
Confidence 99998853
No 128
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.27 Score=51.31 Aligned_cols=134 Identities=7% Similarity=-0.024 Sum_probs=103.7
Q ss_pred HHHHHHHhhccC-cchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhcccCCH
Q 008257 14 KAEKTLANLEKC-ENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKSGNM 90 (572)
Q Consensus 14 ~A~~~L~~L~~~-~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s~~~ 90 (572)
.++..|..++.+ .--+.-+.++...++|++.|+.+...++.-+...+.+... -+.-+..+.+.|+ ..|++++.+.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 345666666653 3335567788889999999998766666667788888776 4555667777788 999999999888
Q ss_pred HHHHHHHHHHHHhhcCCCcH--HHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhc
Q 008257 91 QAREAALKALNQISSCEPSA--KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNS 152 (572)
Q Consensus 91 ~~~~~A~~aL~~Ls~~~~~~--~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~ 152 (572)
..|.+..|.|+.+..++++. -.....-|+..++.+... +.-.+|++...+|.|+..+
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~ND-----pc~~vq~q~lQilrNftc~ 546 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTND-----PCFKVQHQVLQILRNFTCD 546 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcC-----cccccHHHHHHHHHhcccc
Confidence 99999999999999887664 344577788888888754 3478999999999999764
No 129
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=4.8 Score=44.34 Aligned_cols=361 Identities=16% Similarity=0.183 Sum_probs=195.1
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCcc
Q 008257 87 SGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQ 166 (572)
Q Consensus 87 s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~ 166 (572)
+.+.-+|-+|++.|..+-.++.- ++..|+..+..+. . . -..|-|.+-.++... ++++.
T Consensus 183 s~~~m~QyHalglLyqirk~drl--------a~sklv~~~~~~~---~-~--~~~A~~~lir~~~~~-------l~~~~- 240 (865)
T KOG1078|consen 183 SDNIMVQYHALGLLYQIRKNDRL--------AVSKLVQKFTRGS---L-K--SPLAVCMLIRIASEL-------LKENQ- 240 (865)
T ss_pred cHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHHcccc---c-c--chhHHHHHHHHHHHH-------hhhcc-
Confidence 34446677888888877654432 3344455444321 0 0 113444444444321 11110
Q ss_pred ccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 008257 167 TLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSP 246 (572)
Q Consensus 167 ~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~ 246 (572)
.......+-+=+.+++.+.-+...+++++.++..-.. +.. ..++..|-.+|.++...+|-.|.++|..++.
T Consensus 241 -~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~-----r~l---~pavs~Lq~flssp~~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 241 -QADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS-----REL---APAVSVLQLFLSSPKVALRFAAVRTLNKVAM 311 (865)
T ss_pred -cchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCH-----hhc---chHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 0111223334455566777888899999998876532 222 2378888889999999999999999999985
Q ss_pred CCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCc
Q 008257 247 HMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSR 326 (572)
Q Consensus 247 ~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~ 326 (572)
..++.+ ..+ =.-|=.+....+. .+-..|..+|.. .+.......++ .++..+..+-.. +
T Consensus 312 ~~P~~v--~~c-----N~elE~lItd~Nr--sIat~AITtLLK--TG~e~sv~rLm-----~qI~~fv~disD-e----- 369 (865)
T KOG1078|consen 312 KHPQAV--TVC-----NLDLESLITDSNR--SIATLAITTLLK--TGTESSVDRLM-----KQISSFVSDISD-E----- 369 (865)
T ss_pred hCCccc--ccc-----chhHHhhhccccc--chhHHHHHHHHH--hcchhHHHHHH-----HHHHHHHHhccc-c-----
Confidence 434332 111 1223333333332 344445554433 22333333332 233333333111 1
Q ss_pred chhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCC
Q 008257 327 FVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGF 406 (572)
Q Consensus 327 ~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~ 406 (572)
..-+.-.++.+|+... |. ...+.++.|-.+|+..+..+-|+...-++-.+....+..
T Consensus 370 -FKivvvdai~sLc~~f------p~-----k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds----------- 426 (865)
T KOG1078|consen 370 -FKIVVVDAIRSLCLKF------PR-----KHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS----------- 426 (865)
T ss_pred -ceEEeHHHHHHHHhhc------cH-----HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch-----------
Confidence 1112234555555332 22 223557788888887657778877777777665432211
Q ss_pred CccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHh
Q 008257 407 CASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCE 486 (572)
Q Consensus 407 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~ 486 (572)
+.-++..|+....+ -+-..-+.+.|..|-.+++. ....
T Consensus 427 ----------------------------------Ke~~L~~LCefIED--ce~~~i~~rILhlLG~EgP~------a~~P 464 (865)
T KOG1078|consen 427 ----------------------------------KERGLEHLCEFIED--CEFTQIAVRILHLLGKEGPK------APNP 464 (865)
T ss_pred ----------------------------------hhHHHHHHHHHHHh--ccchHHHHHHHHHHhccCCC------CCCc
Confidence 12255566666543 23344566667766665541 1222
Q ss_pred cCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc-----c
Q 008257 487 AQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK-----I 561 (572)
Q Consensus 487 ~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~-----~ 561 (572)
..=|..+...+ --.+..++..|+.++.++....+ .-...+...|.+.+.+.|.++|++|.-+|..+.. .
T Consensus 465 skyir~iyNRv-iLEn~ivRaaAv~alaKfg~~~~-----~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~~~l~ 538 (865)
T KOG1078|consen 465 SKYIRFIYNRV-ILENAIVRAAAVSALAKFGAQDV-----VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKDDVLN 538 (865)
T ss_pred chhhHHHhhhh-hhhhhhhHHHHHHHHHHHhcCCC-----CccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhhhhhc
Confidence 33344555444 24667778888888888872211 1122344467778888999999999999988872 3
Q ss_pred CCCCCCCCCC
Q 008257 562 PNFSGIFPNM 571 (572)
Q Consensus 562 ~~~s~~~~~~ 571 (572)
..++.+|.++
T Consensus 539 ~~~~~l~~s~ 548 (865)
T KOG1078|consen 539 QNYSGLFVSI 548 (865)
T ss_pred cccccccccc
Confidence 3335555543
No 130
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.45 E-value=0.16 Score=52.16 Aligned_cols=113 Identities=14% Similarity=0.219 Sum_probs=67.8
Q ss_pred CCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCC-ch
Q 008257 455 TNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPN-VS 533 (572)
Q Consensus 455 ~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-~~ 533 (572)
.+.+|...|.++|+|+.+--...++........|.+..+.......+.-.+|=++..++.|++.++...-+-..-++ +-
T Consensus 496 d~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F 575 (728)
T KOG4535|consen 496 DKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAF 575 (728)
T ss_pred hhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHH
Confidence 45789999999999998531111111111112233333322221245567888999999999988654222111112 22
Q ss_pred HHHHHHhhc-CCchhHHHHHHHHHhhcccCCCCCC
Q 008257 534 TALVDAFQH-ADYRTRQIAERALKHIDKIPNFSGI 567 (572)
Q Consensus 534 ~~Lv~ll~~-~~~~~~~~Aa~aL~~L~~~~~~s~~ 567 (572)
..|..|+.+ .+..+|..||.+|..-..--.++.-
T Consensus 576 ~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~ 610 (728)
T KOG4535|consen 576 NALTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQ 610 (728)
T ss_pred HHHHHHHHHhccceEeehhhhhhcCCCCcccchhH
Confidence 578888865 6789999999999987765544433
No 131
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.44 E-value=0.53 Score=44.39 Aligned_cols=145 Identities=14% Similarity=0.180 Sum_probs=98.1
Q ss_pred HHHHHHHHHhccCcchhHHHHhhhH-HHHHHhccc-----CCHHHHHHHHHHHHHhhcCCCc--HHHHHHcCChHHHHHH
Q 008257 54 LSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKS-----GNMQAREAALKALNQISSCEPS--AKVLIHAGILPPLVKD 125 (572)
Q Consensus 54 ~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s-----~~~~~~~~A~~aL~~Ls~~~~~--~~~iv~~G~i~~Lv~l 125 (572)
.++...|+.++.+.+.|..+.+.-+ --|..+|.. .++..|-.+++++..|..+++. ...+...++||..++.
T Consensus 97 cnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri 176 (293)
T KOG3036|consen 97 CNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI 176 (293)
T ss_pred HHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence 5677788888999999988877766 334455542 3456789999999999986554 5667799999999999
Q ss_pred HhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHH-HHHhcCChhHHHHHHHHHHHccCCCC
Q 008257 126 LFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLL-HLISNTGPTIECKLLQVLVGLTSSPT 204 (572)
Q Consensus 126 L~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv-~lL~~~~~~~q~~a~~aL~~l~~~~~ 204 (572)
...++ ...|-.|+.++..+-.++.+..=.+...+ ....-..++..++ .+.+.+++.+-.+++|+..+|+.++.
T Consensus 177 me~GS-----elSKtvA~fIlqKIlldD~GL~YiCqt~e-RF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr 250 (293)
T KOG3036|consen 177 MESGS-----ELSKTVATFILQKILLDDVGLYYICQTAE-RFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR 250 (293)
T ss_pred Hhccc-----HHHHHHHHHHHHHHhhccccHHHHHHhHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH
Confidence 98763 66788888888888654432110000000 0111122333333 33345788888999999999999874
No 132
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.40 E-value=1.8 Score=47.44 Aligned_cols=282 Identities=13% Similarity=0.101 Sum_probs=146.6
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS 158 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~ 158 (572)
+.|=.+|++...-+.-.|++++.+|... +.+.+.. ++..|=-+|+++. ..+|-.|..+|..+|+-.+.-..
T Consensus 248 ~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~p--avs~Lq~flssp~-----~~lRfaAvRtLnkvAm~~P~~v~ 318 (865)
T KOG1078|consen 248 PFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELAP--AVSVLQLFLSSPK-----VALRFAAVRTLNKVAMKHPQAVT 318 (865)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcch--HHHHHHHHhcCcH-----HHHHHHHHHHHHHHHHhCCcccc
Confidence 4455566777778888888888887642 2223322 6666666777653 78899999999999875432110
Q ss_pred cccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHH
Q 008257 159 ITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASI 238 (572)
Q Consensus 159 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~ 238 (572)
-+=..|-.++...+..+-..|+.+|+.-.... ....+ ..-|+..+.=+..+...+..+|.
T Consensus 319 -------------~cN~elE~lItd~NrsIat~AITtLLKTG~e~-----sv~rL--m~qI~~fv~disDeFKivvvdai 378 (865)
T KOG1078|consen 319 -------------VCNLDLESLITDSNRSIATLAITTLLKTGTES-----SVDRL--MKQISSFVSDISDEFKIVVVDAI 378 (865)
T ss_pred -------------ccchhHHhhhcccccchhHHHHHHHHHhcchh-----HHHHH--HHHHHHHHHhccccceEEeHHHH
Confidence 01122333344444444445555554433221 11111 11233444333333334444444
Q ss_pred HHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhc
Q 008257 239 ELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQ 318 (572)
Q Consensus 239 ~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~ 318 (572)
++|...- +.. .. +.+..|-++|..+... +.+...+-+|..+....++.+ +-++..|..++.+..
T Consensus 379 ~sLc~~f---p~k------~~-~~m~FL~~~Lr~eGg~-e~K~aivd~Ii~iie~~pdsK-----e~~L~~LCefIEDce 442 (865)
T KOG1078|consen 379 RSLCLKF---PRK------HT-VMMNFLSNMLREEGGF-EFKRAIVDAIIDIIEENPDSK-----ERGLEHLCEFIEDCE 442 (865)
T ss_pred HHHHhhc---cHH------HH-HHHHHHHHHHHhccCc-hHHHHHHHHHHHHHHhCcchh-----hHHHHHHHHHHHhcc
Confidence 4443322 211 11 4456677777665542 555555666555544344443 245566666665521
Q ss_pred cCCCCCCcchhhHHHHHHHHHHHHhc--cCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccC
Q 008257 319 LGETRGSRFVTPFLEGLLSVLARVTF--VLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLT 396 (572)
Q Consensus 319 ~~~~~~~~~~~~~~e~a~~aL~~l~~--~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~ 396 (572)
..+-+...|..+.. +-+.+|.. .+......+-=. +..++..|..||..+.......
T Consensus 443 ------------~~~i~~rILhlLG~EgP~a~~Psk--------yir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l- 500 (865)
T KOG1078|consen 443 ------------FTQIAVRILHLLGKEGPKAPNPSK--------YIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVL- 500 (865)
T ss_pred ------------chHHHHHHHHHHhccCCCCCCcch--------hhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCc-
Confidence 12334444443321 00012221 111111111112 4568888888998886322211
Q ss_pred CCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhh
Q 008257 397 KLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVI 471 (572)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~ 471 (572)
.....-.|.+++.+.+++|++.|..+|..+-
T Consensus 501 --------------------------------------------~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 501 --------------------------------------------LPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred --------------------------------------------cccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 0113446778889999999999999998886
No 133
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.19 E-value=2 Score=43.15 Aligned_cols=206 Identities=17% Similarity=0.143 Sum_probs=115.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCC--CChh
Q 008257 174 VHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH--MGHE 251 (572)
Q Consensus 174 i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~--~~~~ 251 (572)
+...+..+.......++.++..+..+.......+.+... ..-.+..+.+.++.+..+-+..|++++..++-. .+.+
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~--~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDR--RETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence 444555555667888899998888766443221122111 123467777888877766677888888777633 2233
Q ss_pred HHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHH---hcCCCCcHHHHHHHHhCCChHHHH--HHHhhhccCC--CCC
Q 008257 252 LADALRGAVGQLGSLIRVISENVGISKEQAAAVGLL---AELPERDLGLTRQMLDEGAFGLIF--SRVKSIQLGE--TRG 324 (572)
Q Consensus 252 ~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L---~~L~~~~~~~~~~l~~~g~l~~Lv--~lL~~~~~~~--~~~ 324 (572)
. +.+.+ ...|.|.+.+..+......+..++.+| .-+...+.+-..... ..+..+. ..++. .|. .-.
T Consensus 123 ~-~ei~~--~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~--~~~~~~~~ 195 (309)
T PF05004_consen 123 S-EEIFE--ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKS--DGNAPVVA 195 (309)
T ss_pred H-HHHHH--HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCc--CCCccccc
Confidence 2 24444 367889998886654234554444343 333333333222111 1223221 12221 111 111
Q ss_pred CcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 008257 325 SRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLES 392 (572)
Q Consensus 325 ~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~ 392 (572)
......+...|+.++.-+...+ .+.... ... ...+|.|+++|.++ +..||..|..+|+-+....
T Consensus 196 ~~~~~~l~~aAL~aW~lLlt~~-~~~~~~-~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 196 AEDDAALVAAALSAWALLLTTL-PDSKLE-DLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYELA 259 (309)
T ss_pred CCCccHHHHHHHHHHHHHHhcC-CHHHHH-HHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh
Confidence 1224566777777766555431 122233 222 33589999999999 9999999999998776543
No 134
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.17 E-value=0.5 Score=52.40 Aligned_cols=166 Identities=11% Similarity=0.142 Sum_probs=97.4
Q ss_pred HccCCHHHHHHHHH-HHHHhccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHH
Q 008257 45 ILEGPQETKLSLAA-FLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLV 123 (572)
Q Consensus 45 L~~~~~~~~~~aa~-~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv 123 (572)
|.+++...|+.|.. .+..|...++.-.. .|.+++...+.+.++++-.--=|.+.+...+....+ +++.+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dmssL-----f~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti~ 98 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMSSL-----FPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTIQ 98 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChHHH-----HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHHH
Confidence 55566666777663 34555554441111 155666555677777777666666666655533222 344455
Q ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCC
Q 008257 124 KDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSP 203 (572)
Q Consensus 124 ~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~ 203 (572)
+=|.++ ++.+|..|..+++.|=.. =....+++++.+++.++.+.++..|+-++..+=+-.
T Consensus 99 kDl~d~-----N~~iR~~AlR~ls~l~~~---------------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld 158 (757)
T COG5096 99 KDLQDP-----NEEIRGFALRTLSLLRVK---------------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD 158 (757)
T ss_pred hhccCC-----CHHHHHHHHHHHHhcChH---------------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC
Confidence 545432 367777777766655210 012345667777777777777777777766664332
Q ss_pred CccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 008257 204 TTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLS 245 (572)
Q Consensus 204 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls 245 (572)
.....+.|.+..+..++...+|.+..+|+.+|..+-
T Consensus 159 ------~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 159 ------KDLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred ------HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 123345666777777777777777777777776664
No 135
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.06 E-value=0.52 Score=45.24 Aligned_cols=154 Identities=14% Similarity=0.185 Sum_probs=102.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHh-------hhccCCC---ChHHHHHHHHHHhcCCCCcHHHH
Q 008257 229 PQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIR-------VISENVG---ISKEQAAAVGLLAELPERDLGLT 298 (572)
Q Consensus 229 ~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~-------lL~~~~~---~~~~~~~A~~~L~~L~~~~~~~~ 298 (572)
-+++.|+.|+.-|+.-.+. -++.+-.+..+.|.+..|++ .+..++- .+.--..|+..+..++. +++.+
T Consensus 7 ~~~~~Re~Al~eLsk~r~~-~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr 84 (262)
T PF04078_consen 7 CNPETRENALLELSKKRES-FPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETR 84 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC--TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTH
T ss_pred cCcchHHHHHHHHHHhhhc-ccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHH
Confidence 3567788876666554432 23454456666566655533 2333220 01233567777777777 77888
Q ss_pred HHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHH
Q 008257 299 RQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQ 378 (572)
Q Consensus 299 ~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk 378 (572)
..|+++...-.|.-+|.... + .+..+-++=..+|.++.+... +|++....+.+..++|.-...++.+ ++..|
T Consensus 85 ~~Fl~a~iplyLyPfL~tt~--k---~r~~E~LRLtsLGVIgaLvK~--d~~evi~fLl~tEiiplcLr~me~G-selSK 156 (262)
T PF04078_consen 85 MPFLKAHIPLYLYPFLNTTS--K---TRPFEYLRLTSLGVIGALVKT--DDPEVISFLLQTEIIPLCLRIMEFG-SELSK 156 (262)
T ss_dssp HHHHHTTGGGGGHHHHH---------SHHHHHHHHHHHHHHHHHHTT----HHHHHHHHCTTHHHHHHHHHHHS--HHHH
T ss_pred HHHHHcCchhhehhhhhccc--c---ccccchhhHhHHHHHHHHHcC--CcHHHHHHHHhhchHHHHHHHHHhc-cHHHH
Confidence 99999999988888887522 1 123455555678888877766 7999999999999999999999998 99999
Q ss_pred HHHHHHHHHhhhhc
Q 008257 379 MVSATALENLSLES 392 (572)
Q Consensus 379 ~~Aa~aL~~ls~~~ 392 (572)
..|...+..+-.++
T Consensus 157 tvAtfIlqKIL~dd 170 (262)
T PF04078_consen 157 TVATFILQKILLDD 170 (262)
T ss_dssp HHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHcch
Confidence 99999888775543
No 136
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.89 E-value=0.042 Score=34.27 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=25.6
Q ss_pred chHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 008257 361 LAALFIELLQSNGLDKVQMVSATALENLSL 390 (572)
Q Consensus 361 ~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~ 390 (572)
++|.++++++++ +++||..|+.+|..++.
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence 379999999999 99999999999999875
No 137
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.80 E-value=0.086 Score=44.27 Aligned_cols=69 Identities=13% Similarity=0.192 Sum_probs=51.8
Q ss_pred CcHHHHHHHccC-CHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhc
Q 008257 37 RLQPLLTQILEG-PQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISS 105 (572)
Q Consensus 37 ~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~ 105 (572)
.+..|+++|..+ ++.+..-|+.-|+.++. .+..|..+.+.|+ ..+.++|.+++++++..|+.|+..|..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 467888999543 34444445666888776 6677778878899 999999999999999999999988764
No 138
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.66 E-value=10 Score=43.08 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=44.2
Q ss_pred HHhhhH-HHHHHhccc-----CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHh
Q 008257 73 VARTVG-SCLINIMKS-----GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLF 127 (572)
Q Consensus 73 i~~~g~-~~Lv~lL~s-----~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~ 127 (572)
+.+.|| ..|+.+|.+ ...+.-...++.|...+.-..||+.+++.|+|+.|++.|.
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~ 173 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLN 173 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHH
Confidence 345677 999999976 2345556678888888888999999999999999999885
No 139
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.64 E-value=0.86 Score=43.07 Aligned_cols=101 Identities=22% Similarity=0.297 Sum_probs=80.9
Q ss_pred HHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC-----CHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChh
Q 008257 190 CKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP-----QNDLRLASIELIQNLSPHMGHELADALRGAVGQLG 264 (572)
Q Consensus 190 ~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~ 264 (572)
.+++..|..+++.++ .|..+.++..--.|..+|... .+.+|-.++..+..|.+.++.++...+... +.+|
T Consensus 97 cnaL~LlQcvASHpd----Tr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~T-eIVP 171 (293)
T KOG3036|consen 97 CNALALLQCVASHPD----TRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTT-EIVP 171 (293)
T ss_pred HHHHHHHHHHhcCcc----hHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHh-hhHH
Confidence 467777888888875 578888888877888888532 357899999999999988778887788777 8999
Q ss_pred hHHhhhccCCCChHHHHHHHHHHhcCCCCcHHH
Q 008257 265 SLIRVISENVGISKEQAAAVGLLAELPERDLGL 297 (572)
Q Consensus 265 ~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~ 297 (572)
..++.++.++. .-+..|..++..+-.+|...
T Consensus 172 lCLrime~GSe--lSKtvA~fIlqKIlldD~GL 202 (293)
T KOG3036|consen 172 LCLRIMESGSE--LSKTVATFILQKILLDDVGL 202 (293)
T ss_pred HHHHHHhcccH--HHHHHHHHHHHHHhhccccH
Confidence 99999999995 77888888888776644433
No 140
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.62 E-value=2.2 Score=46.98 Aligned_cols=241 Identities=15% Similarity=0.015 Sum_probs=138.3
Q ss_pred CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHH-HHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCCh
Q 008257 108 PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILA-NVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGP 186 (572)
Q Consensus 108 ~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~-nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~ 186 (572)
.-+...|..|+...|.++..... ...+..+..+|. .+... ++ ....+++++...+.+...
T Consensus 495 ~~~~~~Ik~~~~~aLlrl~~~q~-----e~akl~~~~aL~~~i~f~--~~------------~~~~v~~~~~s~~~~d~~ 555 (748)
T KOG4151|consen 495 YERAKKIKPGGYEALLRLGQQQF-----EEAKLKWYHALAGKIDFP--GE------------RSYEVVKPLDSALHNDEK 555 (748)
T ss_pred HhcCccccccHHHHHHHHHHHhc-----hHHHHHHHHHHhhhcCCC--CC------------chhhhhhhhcchhhhhHH
Confidence 33566789999999999988753 567777777777 22111 01 123466666666654332
Q ss_pred hH-HHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhh
Q 008257 187 TI-ECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGS 265 (572)
Q Consensus 187 ~~-q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~ 265 (572)
-. ...++.+|.+|++.++ ..+..|.+.-+++.+-+++-..++..|..++..+.||.-+. --+.+.+.+....++.
T Consensus 556 ~~en~E~L~altnLas~s~---s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~-~~~e~si~e~~~~l~~ 631 (748)
T KOG4151|consen 556 GLENFEALEALTNLASISE---SDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSP-LLYERSIVEYKDRLKL 631 (748)
T ss_pred HHHHHHHHHHhhcccCcch---hhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhH-HHHHHHhhccccCchH
Confidence 22 2367788888887664 35666777777777777777788889999999999998662 2222344442245666
Q ss_pred HHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHH-HHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhc
Q 008257 266 LIRVISENVGISKEQAAAVGLLAELPERDLGLTR-QMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTF 344 (572)
Q Consensus 266 Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~-~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~ 344 (572)
....+..... ....++++.+.-++..+.+++. ..--......++.++.+.. .+++..-+...+++..
T Consensus 632 w~~~~e~~~E--~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~----------~~~qhrgl~~~ln~~~ 699 (748)
T KOG4151|consen 632 WNLNLEVADE--KFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDED----------DEIQHRGLVIILNLFE 699 (748)
T ss_pred HHHHHHhhhh--HHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCch----------hhhhhhhhhhhhhHHH
Confidence 6666666442 5566666666545443444433 3333466677777776532 2233333333333322
Q ss_pred cCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHH
Q 008257 345 VLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALEN 387 (572)
Q Consensus 345 ~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ 387 (572)
. ..+....+.....++.+..+-... -...++.++.+|..
T Consensus 700 ~---~~ei~~~~~~~~~~~~l~~~~~~~-~a~~~~~~~~~l~~ 738 (748)
T KOG4151|consen 700 A---LFEIAEKIFETEVMELLSGLQKLN-RAPKREDAAPCLSA 738 (748)
T ss_pred H---HHHHHHHhccchHHHHHHHHHHhh-hhhhhhhhhhHHHH
Confidence 1 334444444445555544332222 33455555555543
No 141
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.48 E-value=4.8 Score=38.67 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=63.8
Q ss_pred hhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHH
Q 008257 263 LGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARV 342 (572)
Q Consensus 263 l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l 342 (572)
|..|++=|.-++. -.|..++.+++.|-+ .-+||.|...|.+.+ +++-++..|+.||..+
T Consensus 189 I~al~~~l~~~Sa--lfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~--------E~pMVRhEaAeALGaI 247 (289)
T KOG0567|consen 189 INALIDGLADDSA--LFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDET--------EHPMVRHEAAEALGAI 247 (289)
T ss_pred HHHHHHhcccchH--HHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhh--------cchHHHHHHHHHHHhh
Confidence 4455555555543 677888888877643 245788888888632 3566677799999888
Q ss_pred hccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHh
Q 008257 343 TFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENL 388 (572)
Q Consensus 343 ~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~l 388 (572)
+ |++. ++.|.+.+.++ .+-+++.+..+|.-+
T Consensus 248 a-----~e~~---------~~vL~e~~~D~-~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 248 A-----DEDC---------VEVLKEYLGDE-ERVVRESCEVALDML 278 (289)
T ss_pred c-----CHHH---------HHHHHHHcCCc-HHHHHHHHHHHHHHH
Confidence 7 5654 46778888888 888998888887543
No 142
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.40 E-value=2 Score=43.07 Aligned_cols=169 Identities=17% Similarity=0.143 Sum_probs=109.4
Q ss_pred CCcHHHH-HHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcH--HH
Q 008257 36 GRLQPLL-TQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSA--KV 112 (572)
Q Consensus 36 g~i~~Lv-~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~--~~ 112 (572)
+.++.|| .-+++.+..+|..+..+|+-.+.-+. .++....+.+...++.++..++..|++++..+....... ..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 5566666 56788889999999999998877444 444455688888888889999999999999998532211 11
Q ss_pred -------HHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccch-hhhHHHHHHHHhcC
Q 008257 113 -------LIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVS-EDIVHNLLHLISNT 184 (572)
Q Consensus 113 -------iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~-~~~i~~Lv~lL~~~ 184 (572)
.-....+..+.+.|.+. .++++..|++.++.|--++ .+.. ..++..|+-+..++
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~~-----~~~~~~~a~EGl~KLlL~~-------------~i~~~~~vL~~Lll~yF~p 164 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDSE-----NPELQAIAVEGLCKLLLSG-------------RISDPPKVLSRLLLLYFNP 164 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHhcC-------------CCCcHHHHHHHHHHHHcCc
Confidence 11244566777777653 3789999999999987643 2344 56777777666543
Q ss_pred ----ChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC
Q 008257 185 ----GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP 229 (572)
Q Consensus 185 ----~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~ 229 (572)
+..+++.....+-..+.... +.+ ...+...+|.+-.+.+..
T Consensus 165 ~t~~~~~LrQ~L~~Ffp~y~~s~~---~~Q-~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 165 STEDNQRLRQCLSVFFPVYASSSP---ENQ-ERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred ccCCcHHHHHHHHHHHHHHHcCCH---HHH-HHHHHHHHHHHHHHHhCc
Confidence 23444444444445555432 222 233445556665555543
No 143
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.26 E-value=2.5 Score=43.56 Aligned_cols=252 Identities=13% Similarity=0.047 Sum_probs=131.0
Q ss_pred cHHHHHHHc-cCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhccc-CCH-HHHHHHHHHHHHhhcCCCcHHHH
Q 008257 38 LQPLLTQIL-EGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKS-GNM-QAREAALKALNQISSCEPSAKVL 113 (572)
Q Consensus 38 i~~Lv~~L~-~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s-~~~-~~~~~A~~aL~~Ls~~~~~~~~i 113 (572)
++.++.-|. ..+..+|+.++-.|..-..+..-+..+...|. ..+++.+.. ++. ..--.++.+++-|+.+..+...+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 345555555 34567788888888887788899999999998 999999843 333 33445555666666665556555
Q ss_pred HHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHh---------cC
Q 008257 114 IHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS---------NT 184 (572)
Q Consensus 114 v~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~---------~~ 184 (572)
-+.+.+..++++|......+........-. .++.+ .....+..+-..+. ..
T Consensus 103 ~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~---~~lsk-----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (361)
T PF07814_consen 103 LDRDSLRLLLKLLKVDKSLDVPSDSDSSRK---KNLSK-----------------VQQKSRSLCKELLSSGSSWKSPKPP 162 (361)
T ss_pred hchhHHHHHHHHhccccccccccchhhhhh---hhhhH-----------------HHHHHHHHHHHHHhccccccccCCc
Confidence 677778888998872100000000000000 00000 00111111111110 01
Q ss_pred ChhHHHHHHHHHHHcc-----------CCCCccHHHHHHHHhcCChHHHHHHhcC----C-------CH-----HHHHHH
Q 008257 185 GPTIECKLLQVLVGLT-----------SSPTTVLSVVSAIKSSGATISLVQFVEA----P-------QN-----DLRLAS 237 (572)
Q Consensus 185 ~~~~q~~a~~aL~~l~-----------~~~~~~~~~~~~i~~~g~i~~Lv~lL~~----~-------~~-----~v~~~a 237 (572)
...-+.-++.++..++ ..+...+..++.+++.||+..++..+.. . ++ ..-..+
T Consensus 163 ~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~c 242 (361)
T PF07814_consen 163 ELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERC 242 (361)
T ss_pred ccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHH
Confidence 1122344455554442 1222234567778899999999999851 1 11 123345
Q ss_pred HHHHHHcCCCCChhHHHHHhcccCChhhHH-hhhccCCC-ChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHH
Q 008257 238 IELIQNLSPHMGHELADALRGAVGQLGSLI-RVISENVG-ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGL 309 (572)
Q Consensus 238 ~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv-~lL~~~~~-~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~ 309 (572)
.++|.+.+-.....-...+....+.++.+. .++....+ .......+++++-|++.+++...+.+...+....
T Consensus 243 l~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~ 316 (361)
T PF07814_consen 243 LSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQ 316 (361)
T ss_pred HHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccc
Confidence 566666553321111111221112333322 22222221 1245688999999999988777666665544333
No 144
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.22 E-value=2.2 Score=41.93 Aligned_cols=236 Identities=13% Similarity=0.124 Sum_probs=144.8
Q ss_pred CCCCHHHHHHHHHHHHhhccCcchHHHH-HHcCCcHHHHHHHcc--CCHHHHHHHHHHHHHhccCcchhHHHHhh-h-HH
Q 008257 5 KSENLLTVEKAEKTLANLEKCENNVRQM-AENGRLQPLLTQILE--GPQETKLSLAAFLGDLALNSDVKVLVART-V-GS 79 (572)
Q Consensus 5 ~s~~~~~~~~A~~~L~~L~~~~~n~~~i-~~~g~i~~Lv~~L~~--~~~~~~~~aa~~L~~l~~~~~~k~~i~~~-g-~~ 79 (572)
|+-|+-++-.|...|.+|....+.++.+ +|.-.-..++..++. |....|..+.-+++-+..+.+..+.|.+. . +.
T Consensus 159 Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~ 238 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIN 238 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 4456667788889999999877776544 354455677777764 45677888888888888877766556543 3 37
Q ss_pred HHHHhcccCC-HHHHHHHHHHHHHhhcCC--CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC-
Q 008257 80 CLINIMKSGN-MQAREAALKALNQISSCE--PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD- 155 (572)
Q Consensus 80 ~Lv~lL~s~~-~~~~~~A~~aL~~Ls~~~--~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~- 155 (572)
.|+++.++.. ..+-+-++..+.|+.... .....+.-.|-+.+-+++|.... =.+.+++..--.+=..|..+...
T Consensus 239 dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erk--ysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 239 DLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERK--YSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcC--CChHHHHHHHHHHHHHHHhhhhhh
Confidence 8888888754 345677888899988622 34555666777778888886543 11234444433333333222110
Q ss_pred ----------------CCccccC-----CCccccch--hhhHHHHHHHHhcCChh-HHHHHHHHHHHccCCCCccHHHHH
Q 008257 156 ----------------FDSITVG-----PDNQTLVS--EDIVHNLLHLISNTGPT-IECKLLQVLVGLTSSPTTVLSVVS 211 (572)
Q Consensus 156 ----------------~~~~~~~-----~~~~~l~~--~~~i~~Lv~lL~~~~~~-~q~~a~~aL~~l~~~~~~~~~~~~ 211 (572)
|.....+ ++-..+.. -..+..|.+++++..+. .-.-|+.=+..+.... ++.+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~---PE~~~ 393 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS---PEINA 393 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC---chHHH
Confidence 0000000 00001111 12566777777765554 2222333333333221 24567
Q ss_pred HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 008257 212 AIKSSGATISLVQFVEAPQNDLRLASIELIQNLS 245 (572)
Q Consensus 212 ~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls 245 (572)
.+...||=..+.+|++++|++++-.|+.++..+.
T Consensus 394 vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 394 VLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 7788999999999999999999999999887653
No 145
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.20 E-value=0.71 Score=50.65 Aligned_cols=232 Identities=13% Similarity=0.105 Sum_probs=143.0
Q ss_pred CChhhHHhhhccCCCChHHHHHHHHHHh-cCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHH
Q 008257 261 GQLGSLIRVISENVGISKEQAAAVGLLA-ELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVL 339 (572)
Q Consensus 261 g~l~~Lv~lL~~~~~~~~~~~~A~~~L~-~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL 339 (572)
|+...|.++.....+ ..+..+..+|. .+...... ....++++.+.+...+.+ .+.-| .+-++
T Consensus 504 ~~~~aLlrl~~~q~e--~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~--------~en~E-~L~al 566 (748)
T KOG4151|consen 504 GGYEALLRLGQQQFE--EAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKG--------LENFE-ALEAL 566 (748)
T ss_pred cHHHHHHHHHHHhch--HHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHH--------HHHHH-HHHHh
Confidence 899999999877764 44544445554 33332211 124567777777653211 11122 66778
Q ss_pred HHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCc
Q 008257 340 ARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPV 419 (572)
Q Consensus 340 ~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (572)
.+++++ +...++.+.++-.++.+-+++... ++..|+.++..+.||..+..-..+.
T Consensus 567 tnLas~---s~s~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~s--------------------- 621 (748)
T KOG4151|consen 567 TNLASI---SESDRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERS--------------------- 621 (748)
T ss_pred hcccCc---chhhHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHH---------------------
Confidence 888875 555555577777777755565565 7889999999999998765433221
Q ss_pred cccccccccCccCccchhhhhh-ccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHh
Q 008257 420 ITGLCRLHRGLCSLKETFCLLE-GHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLL 498 (572)
Q Consensus 420 ~~~~c~~~~~~~~~~~~~~l~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~ 498 (572)
+++ ...++....++...++....++++++..+....+++-.+ ...-..+...++.++
T Consensus 622 -------------------i~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~--~~~~~~~~e~~~~~i- 679 (748)
T KOG4151|consen 622 -------------------IVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSR--ILELLEWLEILVRAI- 679 (748)
T ss_pred -------------------hhccccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhh--HHHhhcchHHHHHhh-
Confidence 122 345666677777777777788887777555443322111 333345667788888
Q ss_pred hcCCHHHHHHHHHHHHHHHcc-hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHh
Q 008257 499 EKRTENLQRRAVWVVERILRT-DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKH 557 (572)
Q Consensus 499 ~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~ 557 (572)
.++++++|.+.+..+.+++.. .++...+.....+. .+..+-.-.-...++.++.+|.-
T Consensus 680 ~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~-~l~~~~~~~~a~~~~~~~~~l~~ 738 (748)
T KOG4151|consen 680 QDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVME-LLSGLQKLNRAPKREDAAPCLSA 738 (748)
T ss_pred cCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHH-HHHHHHHhhhhhhhhhhhhHHHH
Confidence 499999999999888886643 55666666655554 44443333334555566666543
No 146
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.90 E-value=0.6 Score=45.02 Aligned_cols=97 Identities=15% Similarity=0.079 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhcc-cCCHHHHHHHHHHHHHhhcC-CCcHHHHHHcCChHHHHHHHhc
Q 008257 53 KLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMK-SGNMQAREAALKALNQISSC-EPSAKVLIHAGILPPLVKDLFT 128 (572)
Q Consensus 53 ~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~-~~~~~~iv~~G~i~~Lv~lL~s 128 (572)
...|...|.-+.+ ++..|..+.+... ..|+++|+ +..+.++.+++.+|..+..+ +.|.+..-+.||+..++.++++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 3445667777776 7788888877766 99999995 46789999999999888765 6677777799999999999997
Q ss_pred cCCCCCCcchHHHHHHHHHHHHhc
Q 008257 129 VGSNHLPMRLKEVSATILANVVNS 152 (572)
Q Consensus 129 ~~~~~~~~~~~~~aa~~L~nla~~ 152 (572)
.. .+.++|-.+.+.|.-....
T Consensus 188 ~~---~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 188 KS---TDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred cc---ccHHHhHHHHHHHHHHHcc
Confidence 64 4578888888888876553
No 147
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.90 E-value=0.1 Score=32.44 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=25.1
Q ss_pred hHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q 008257 445 VEKLIALLDHTNEKVVEASLAALSTVID 472 (572)
Q Consensus 445 i~~Lv~lL~~~~~~v~~~A~~aL~~l~~ 472 (572)
+|.+++++++++++|+.+|+.+|+.++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999874
No 148
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=93.85 E-value=14 Score=41.64 Aligned_cols=411 Identities=12% Similarity=0.131 Sum_probs=216.6
Q ss_pred CHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc--CcchhHHHHhhhHHHHHHhc
Q 008257 8 NLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL--NSDVKVLVARTVGSCLINIM 85 (572)
Q Consensus 8 ~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~--~~~~k~~i~~~g~~~Lv~lL 85 (572)
+|.+...+..-+.+.+..- ....+..+.++.++.+..+....+|..|...+.++.. ++.- .+...+.+.+++..
T Consensus 250 ~~~Vr~~~a~~l~~~a~~~--~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~ 325 (759)
T KOG0211|consen 250 TPMVRRAVASNLGNIAKVL--ESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAV 325 (759)
T ss_pred chhhHHHHHhhhHHHHHHH--HHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHh
Confidence 3344444444444444321 1256667888888888888888888888887777653 2221 23333449999999
Q ss_pred ccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCc
Q 008257 86 KSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDN 165 (572)
Q Consensus 86 ~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~ 165 (572)
+.++..++.........|...=.- ....---+++...+++.. .-+.+...+.-...++....... .
T Consensus 326 ~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~-----~~e~r~a~a~~~~~l~~~l~~~~-------~ 391 (759)
T KOG0211|consen 326 EDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDE-----EWEVRYAIAKKVQKLACYLNASC-------Y 391 (759)
T ss_pred cChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcch-----hhhhhHHhhcchHHHhhhcCccc-------c
Confidence 888888877777766666642111 122334567777777642 23445555555555554322100 0
Q ss_pred cccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCC-CCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHc
Q 008257 166 QTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSS-PTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNL 244 (572)
Q Consensus 166 ~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~-~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L 244 (572)
..+.....+|.+-.+..+.+..++...+.....+.-. +.. +. -..-.|.+..+++..+++++.+..+.+..+
T Consensus 392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~----~t---i~~llp~~~~~l~de~~~V~lnli~~ls~~ 464 (759)
T KOG0211|consen 392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE----RT---ISELLPLLIGNLKDEDPIVRLNLIDKLSLL 464 (759)
T ss_pred cccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC----cC---ccccChhhhhhcchhhHHHHHhhHHHHHHH
Confidence 1122233456665665666666766655555444321 110 00 123466777788888899999988766444
Q ss_pred CCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCC
Q 008257 245 SPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRG 324 (572)
Q Consensus 245 s~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~ 324 (572)
-...+..-.+.... .-+|.++.+-.... ...+.+....+..++.... ..+.+. .+..++..--..
T Consensus 465 ~~v~~v~g~~~~s~--slLp~i~el~~d~~--wRvr~ail~~ip~la~q~~---~~~~~~----~~~~l~~~~l~d---- 529 (759)
T KOG0211|consen 465 EEVNDVIGISTVSN--SLLPAIVELAEDLL--WRVRLAILEYIPQLALQLG---VEFFDE----KLAELLRTWLPD---- 529 (759)
T ss_pred HhccCcccchhhhh--hhhhhhhhhccchh--HHHHHHHHHHHHHHHHhhh---hHHhhH----HHHHHHHhhhhh----
Confidence 22111000011222 34566666544332 2555555555544443211 112221 122222210000
Q ss_pred CcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCC
Q 008257 325 SRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPS 404 (572)
Q Consensus 325 ~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~ 404 (572)
..-++.++|+..+..++..+..+...+ -.+|.+......+ +-..|...+.++..++.--+
T Consensus 530 --~v~~Ir~~aa~~l~~l~~~~G~~w~~~------~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g----------- 589 (759)
T KOG0211|consen 530 --HVYSIREAAARNLPALVETFGSEWARL------EEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLG----------- 589 (759)
T ss_pred --hHHHHHHHHHHHhHHHHHHhCcchhHH------HhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhc-----------
Confidence 234566777666666553211122222 2356666665555 56667666677665543111
Q ss_pred CCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHH
Q 008257 405 GFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVL 484 (572)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i 484 (572)
+ .+....-+|++.++..++.+.|+-.++..|..+...-. ...
T Consensus 590 ------------------------------~--ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~------~~~ 631 (759)
T KOG0211|consen 590 ------------------------------Q--EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLD------ESV 631 (759)
T ss_pred ------------------------------c--HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcc------hHH
Confidence 0 12344577888888888888999888888887764211 011
Q ss_pred HhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257 485 CEAQGIKPILDVLLEKRTENLQRRAVWVVERIL 517 (572)
Q Consensus 485 ~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~ 517 (572)
.+ +-|.++.+.|...++-..+-.|.-++..+.
T Consensus 632 ~~-~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 632 RD-EEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred HH-HHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 12 224455555545666667777766665554
No 149
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.84 E-value=4.6 Score=36.94 Aligned_cols=92 Identities=15% Similarity=0.225 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCc
Q 008257 329 TPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCA 408 (572)
Q Consensus 329 ~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~ 408 (572)
+.++.+++-+++-++.. -|...+ ..+|.+...|+++ ++.||+.|...|..|...+.- +
T Consensus 2 ~~vR~n~i~~l~DL~~r---~~~~ve-----~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~i--k----------- 59 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIR---YPNLVE-----PYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMI--K----------- 59 (178)
T ss_pred HHHHHHHHHHHHHHHHh---CcHHHH-----hHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCce--e-----------
Confidence 34567788888877753 444332 3478999999999 999999999999998753210 0
Q ss_pred cccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhc
Q 008257 409 SIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDD 473 (572)
Q Consensus 409 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~ 473 (572)
++...+..++.+|.+++++|+..|...+..+...
T Consensus 60 -------------------------------~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 60 -------------------------------VKGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred -------------------------------ehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 0111336778889999999999999999999865
No 150
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.57 E-value=1.1 Score=51.49 Aligned_cols=301 Identities=13% Similarity=0.114 Sum_probs=163.9
Q ss_pred HHHHcCCcHHHHHHHcc-----CCHHHHHHHHHHHHHhcc--CcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHH
Q 008257 31 QMAENGRLQPLLTQILE-----GPQETKLSLAAFLGDLAL--NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQ 102 (572)
Q Consensus 31 ~i~~~g~i~~Lv~~L~~-----~~~~~~~~aa~~L~~l~~--~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~ 102 (572)
.+.+.|++ -++.++.+ -....|++|...|..++. +++++-. -+ |-+|.++..+..++|..|+.+|..
T Consensus 414 ~~~~~ga~-l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LD----RVlPY~v~l~~Ds~a~Vra~Al~Tlt~ 488 (1431)
T KOG1240|consen 414 DPKEEGAV-LFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLD----RVLPYFVHLLMDSEADVRATALETLTE 488 (1431)
T ss_pred Ccccccee-eeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHh----hhHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 45556654 33444332 245678899999999987 5555421 24 999999999999999999999988
Q ss_pred hhcC----CCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHH
Q 008257 103 ISSC----EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLL 178 (572)
Q Consensus 103 Ls~~----~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv 178 (572)
+-.. +..-..|.-.=.+|.|-.++.+. ....++..=|..|+.||.... .+...+.-....
T Consensus 489 ~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~----~~~~vRiayAsnla~LA~tA~------------rFle~~q~~~~~ 552 (1431)
T KOG1240|consen 489 LLALVRDIPPSDANIFPEYLFPHLNHLLNDS----SAQIVRIAYASNLAQLAKTAY------------RFLELTQELRQA 552 (1431)
T ss_pred HHhhccCCCcccchhhHhhhhhhhHhhhccC----ccceehhhHHhhHHHHHHHHH------------HHHHHHHHHHhc
Confidence 8752 22223333444677777777642 125667777777887775311 011111111112
Q ss_pred HHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHH-HHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHh
Q 008257 179 HLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATIS-LVQFVEAPQNDLRLASIELIQNLSPHMGHELADALR 257 (572)
Q Consensus 179 ~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~-Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~ 257 (572)
.+++.++.+. ......+ .+.. ++ ..+|.. .+.||..+++.||+.-+..|.-|+...+.+-
T Consensus 553 g~~n~~nset----------~~~~~~~-~~~~-~L--~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k----- 613 (1431)
T KOG1240|consen 553 GMLNDPNSET----------APEQNYN-TELQ-AL--HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK----- 613 (1431)
T ss_pred ccccCccccc----------ccccccc-hHHH-HH--HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc-----
Confidence 2222222210 0000000 0111 11 123443 3456666666777776666666663322210
Q ss_pred cccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHH
Q 008257 258 GAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLS 337 (572)
Q Consensus 258 ~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~ 337 (572)
..+-.++.|+.+|...+. .+|.+=.-.|..++.. ....=++++.+|.|..-|.+. .+.++..|++
T Consensus 614 sND~iLshLiTfLNDkDw--~LR~aFfdsI~gvsi~---VG~rs~seyllPLl~Q~ltD~----------EE~Viv~aL~ 678 (1431)
T KOG1240|consen 614 SNDVILSHLITFLNDKDW--RLRGAFFDSIVGVSIF---VGWRSVSEYLLPLLQQGLTDG----------EEAVIVSALG 678 (1431)
T ss_pred cccchHHHHHHHhcCccH--HHHHHHHhhccceEEE---EeeeeHHHHHHHHHHHhccCc----------chhhHHHHHH
Confidence 111357888888887753 5554333333322221 111125667788888888762 3567888999
Q ss_pred HHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 008257 338 VLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLES 392 (572)
Q Consensus 338 aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~ 392 (572)
+|..+.. ..-.++..+ ..++....-+|..+ +.=+|+.++..+...+..-
T Consensus 679 ~ls~Lik----~~ll~K~~v-~~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 679 SLSILIK----LGLLRKPAV-KDILQDVLPLLCHP-NLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHHHHH----hcccchHHH-HHHHHhhhhheeCc-hHHHHHHHHHHHHHHHhhh
Confidence 8887773 222332211 11223333445577 8889988888887776543
No 151
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=93.02 E-value=16 Score=41.54 Aligned_cols=239 Identities=15% Similarity=0.109 Sum_probs=134.5
Q ss_pred HHHHcCCcHHHHHHHccCC-----HHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcc----cCC----HHHHHHH
Q 008257 31 QMAENGRLQPLLTQILEGP-----QETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMK----SGN----MQAREAA 96 (572)
Q Consensus 31 ~i~~~g~i~~Lv~~L~~~~-----~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~----s~~----~~~~~~A 96 (572)
.+.+.|+++.++.++.+-. .+.-......|..++.-..||+.+.+.|+ +.|++.|+ .+. .+.-+.-
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 3567899999999987532 22333344555656678899999888877 88888775 333 4555666
Q ss_pred HHHHHHhhcCCCcHHH-----HHHcCC--------hHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCC
Q 008257 97 LKALNQISSCEPSAKV-----LIHAGI--------LPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGP 163 (572)
Q Consensus 97 ~~aL~~Ls~~~~~~~~-----iv~~G~--------i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~ 163 (572)
+.++..|......... .....+ |..|++.+.+.. ....+.+.+..+.+|-+|+.+..
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~-~r~~~~i~~~l~RiLP~Lt~G~~--------- 261 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPF-VRSNPQILQALARILPFLTYGNE--------- 261 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCcc-ccCCHHHHHHHHHHhhHHhcCCH---------
Confidence 6666666543211111 012222 666666665431 11235677788888888876432
Q ss_pred CccccchhhhHHHHHHHHhc----------CChhHHHHHHHHHHHccCC---CCccHHHHHHHHhcCChHHHHHHhcCCC
Q 008257 164 DNQTLVSEDIVHNLLHLISN----------TGPTIECKLLQVLVGLTSS---PTTVLSVVSAIKSSGATISLVQFVEAPQ 230 (572)
Q Consensus 164 ~~~~l~~~~~i~~Lv~lL~~----------~~~~~q~~a~~aL~~l~~~---~~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 230 (572)
..+..|++..+. ..++-+ ..+..++.++.. +.+...++..|.+.|.+...+..|....
T Consensus 262 --------e~m~~Lv~~F~p~l~f~~~D~~~~~~~~-~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~ 332 (802)
T PF13764_consen 262 --------EKMDALVEHFKPYLDFDKFDEEHSPDEQ-FKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHF 332 (802)
T ss_pred --------HHHHHHHHHHHHhcChhhcccccCchHH-HHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhC
Confidence 234444444431 111111 224444444432 2233689999999999998888875433
Q ss_pred H--------HHH--------HHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCC
Q 008257 231 N--------DLR--------LASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPE 292 (572)
Q Consensus 231 ~--------~v~--------~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~ 292 (572)
| +.+ ..++++|.-|+.+.. ..+..+.+ ..|+.+.++=...++ ..+-.-|-.+|-.|..
T Consensus 333 P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~gh~-~tQ~~~~~--~~l~~lH~LEqvss~-~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 333 PSLKNTDSPEWKEFLSRPSLPYILRLLRGLARGHE-PTQLLIAE--QLLPLLHRLEQVSSE-EHIGSLAENLLEALAE 406 (802)
T ss_pred cccccCCCHHHHHHhcCCcHHHHHHHHHHHHhcCH-HHHHHHHh--hHHHHHHHhhcCCCc-cchHHHHHHHHHHHhc
Confidence 2 233 356778888886632 23333333 677555555443332 2444444445544544
No 152
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.94 E-value=0.43 Score=38.84 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=49.3
Q ss_pred cchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHH-hcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHc
Q 008257 443 HAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLC-EAQGIKPILDVLLEKRTENLQRRAVWVVERILR 518 (572)
Q Consensus 443 g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~ 518 (572)
-.++|++..+.+++.+|+.+|+.+|++++.... . ..+. =..-++.|..++ ..+++.+|. +++.|-++.+
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~---~--~~l~~f~~IF~~L~kl~-~D~d~~Vr~-~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVAR---G--EILPYFNEIFDALCKLS-ADPDENVRS-AAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHH-cCCchhHHH-HHHHHHHHhc
Confidence 378999999999999999999999999986421 1 1111 123445677777 477888765 5577777653
No 153
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=92.82 E-value=0.85 Score=46.20 Aligned_cols=224 Identities=11% Similarity=0.129 Sum_probs=142.0
Q ss_pred HHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhH-----HHHhhhH-HHHHHhccc-CCHHHHHHHHHHHHHh
Q 008257 32 MAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKV-----LVARTVG-SCLINIMKS-GNMQAREAALKALNQI 103 (572)
Q Consensus 32 i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~-----~i~~~g~-~~Lv~lL~s-~~~~~~~~A~~aL~~L 103 (572)
+...+.+..|+..|..-+-+.|...+....++.. ..+.+. .+. ... ..|.-+++. ++++.--.+-..|+..
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~-~~~peil~~L~~gy~~~dial~~g~mlRec 150 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLE-RHRPEILDILLRGYENPDIALNCGDMLREC 150 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHH-T--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHH-hCCHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 4455778888888888888888888777777654 222222 122 222 233333332 4667778888899998
Q ss_pred hcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccc--hhhhHHHHHHHH
Q 008257 104 SSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLV--SEDIVHNLLHLI 181 (572)
Q Consensus 104 s~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~--~~~~i~~Lv~lL 181 (572)
..++.-.+.+.....+-.+.+....++ -++-..|..++..+-..... .+. ..+. -..++...-.||
T Consensus 151 ~k~e~l~~~iL~~~~f~~ff~~~~~~~-----Fdiasdaf~t~~~llt~hk~----~~a---~fl~~n~d~ff~~~~~Ll 218 (335)
T PF08569_consen 151 IKHESLAKIILYSECFWKFFKYVQLPN-----FDIASDAFSTFKELLTRHKK----LVA---EFLSNNYDRFFQKYNKLL 218 (335)
T ss_dssp TTSHHHHHHHHTSGGGGGHHHHTTSSS-----HHHHHHHHHHHHHHHHSSHH----HHH---HHHHHTHHHHHHHHHHHC
T ss_pred HhhHHHHHHHhCcHHHHHHHHHhcCCc-----cHhHHHHHHHHHHHHhccHH----HHH---HHHHHHHHHHHHHHHHHc
Confidence 888777788888888888888876542 67777788887776432210 000 0111 123566778888
Q ss_pred hcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCC--CCChhHHHHHhcc
Q 008257 182 SNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSP--HMGHELADALRGA 259 (572)
Q Consensus 182 ~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~--~~~~~~~~~i~~~ 259 (572)
.+++.-.+.++++.|..+-.++.+.....+-+.+..-+..+..+|+++...+|-.|.-++.-... +.+.++.+.+..+
T Consensus 219 ~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~N 298 (335)
T PF08569_consen 219 ESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKN 298 (335)
T ss_dssp T-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHT
T ss_pred cCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence 89999999999999999988876532223334455567888899999999999999988877653 3355565555443
Q ss_pred cCChhhHHhhhc
Q 008257 260 VGQLGSLIRVIS 271 (572)
Q Consensus 260 ~g~l~~Lv~lL~ 271 (572)
=..|+++|.
T Consensus 299 ---r~kLl~fl~ 307 (335)
T PF08569_consen 299 ---REKLLRFLK 307 (335)
T ss_dssp ---HHHHHHHHH
T ss_pred ---HHHHHHHHH
Confidence 134555553
No 154
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.49 E-value=29 Score=41.50 Aligned_cols=315 Identities=12% Similarity=0.115 Sum_probs=149.6
Q ss_pred HHHHHccCCHHHHHHH-HHHHHHhccCcchhHHH-HhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhc--CCCcHHHHHH
Q 008257 41 LLTQILEGPQETKLSL-AAFLGDLALNSDVKVLV-ARTVG-SCLINIMKSGNMQAREAALKALNQISS--CEPSAKVLIH 115 (572)
Q Consensus 41 Lv~~L~~~~~~~~~~a-a~~L~~l~~~~~~k~~i-~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~--~~~~~~~iv~ 115 (572)
|.+.+.++++..|... .|.|.-.-.-...+... ....+ ..+..+|...++-.|.-|.+=|.-.=. +.+.++.+
T Consensus 823 l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~L-- 900 (1702)
T KOG0915|consen 823 LDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSL-- 900 (1702)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHH--
Confidence 3445556666665443 34443221111122222 12245 778888888887778777664433221 23334443
Q ss_pred cCChHHHHHHHhccCC-----------------CCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHH
Q 008257 116 AGILPPLVKDLFTVGS-----------------NHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLL 178 (572)
Q Consensus 116 ~G~i~~Lv~lL~s~~~-----------------~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv 178 (572)
+..|++-|..+.. ...+..-+...=.=|.|||+ -+-.++.|..++
T Consensus 901 ---V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS---------------dl~qPdLVYKFM 962 (1702)
T KOG0915|consen 901 ---VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS---------------DLGQPDLVYKFM 962 (1702)
T ss_pred ---HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh---------------hcCChHHHHHHH
Confidence 4445555532210 00000001111111333333 123455677777
Q ss_pred HHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHh
Q 008257 179 HLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALR 257 (572)
Q Consensus 179 ~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~ 257 (572)
+|-++ ....-+.-|+.-+..++.... +..+..+ ..-||.|.+.=.+++..+|..=..+...|..+ ...+.+.-.
T Consensus 963 ~LAnh~A~wnSk~GaAfGf~~i~~~a~--~kl~p~l--~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D-~k~~vd~y~ 1037 (1702)
T KOG0915|consen 963 QLANHNATWNSKKGAAFGFGAIAKQAG--EKLEPYL--KKLIPRLYRYQYDPDKKVQDAMTSIWNALITD-SKKVVDEYL 1037 (1702)
T ss_pred HHhhhhchhhcccchhhchHHHHHHHH--HhhhhHH--HHhhHHHhhhccCCcHHHHHHHHHHHHHhccC-hHHHHHHHH
Confidence 77663 233444445444444443321 1122111 23577777776677888776544444445544 233333322
Q ss_pred cccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHH-HHhhhccCCCCCCcchhhHHHHHH
Q 008257 258 GAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFS-RVKSIQLGETRGSRFVTPFLEGLL 336 (572)
Q Consensus 258 ~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~-lL~~~~~~~~~~~~~~~~~~e~a~ 336 (572)
. -++.-|+.=|.+.. + .+|+++.-+|..|-.+.+ . ..+.+ -+|.+.. +++-.. + ++ ......-+.++
T Consensus 1038 n--eIl~eLL~~lt~ke-w-RVReasclAL~dLl~g~~-~-~~~~e--~lpelw~~~fRvmD-D-IK--EsVR~aa~~~~ 1105 (1702)
T KOG0915|consen 1038 N--EILDELLVNLTSKE-W-RVREASCLALADLLQGRP-F-DQVKE--KLPELWEAAFRVMD-D-IK--ESVREAADKAA 1105 (1702)
T ss_pred H--HHHHHHHHhccchh-H-HHHHHHHHHHHHHHcCCC-h-HHHHH--HHHHHHHHHHHHHH-H-HH--HHHHHHHHHHH
Confidence 2 25566666666655 4 788888888888766422 2 12221 2333332 222110 0 00 01222233455
Q ss_pred HHHHHHhccCC--CChHHHHHHHHcCchHHHHH--HhccCCcHHHHHHHHHHHHHhhhhcccc
Q 008257 337 SVLARVTFVLS--DEPDAIALCCEHNLAALFIE--LLQSNGLDKVQMVSATALENLSLESKNL 395 (572)
Q Consensus 337 ~aL~~l~~~~~--~~~~~~~~i~~~g~i~~Lv~--lL~~~~~~~vk~~Aa~aL~~ls~~~~~~ 395 (572)
.+|.+++-... .++.--+.+. ..++|.|++ .+ +. ..++++.+...+..|+.+.+..
T Consensus 1106 ~~lsKl~vr~~d~~~~~~~~~~l-~~iLPfLl~~gim-s~-v~evr~~si~tl~dl~Kssg~~ 1165 (1702)
T KOG0915|consen 1106 RALSKLCVRICDVTNGAKGKEAL-DIILPFLLDEGIM-SK-VNEVRRFSIGTLMDLAKSSGKE 1165 (1702)
T ss_pred HHHHHHHhhhcccCCcccHHHHH-HHHHHHHhccCcc-cc-hHHHHHHHHHHHHHHHHhchhh
Confidence 56655542211 2232222322 245677662 22 33 7889999999999998877654
No 155
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.45 E-value=1.5 Score=40.64 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHHhhccCcchHHHHHHc----------------CCcHHHHHHHccC-----C-HHHHHHHHHHHHHhcc
Q 008257 8 NLLTVEKAEKTLANLEKCENNVRQMAEN----------------GRLQPLLTQILEG-----P-QETKLSLAAFLGDLAL 65 (572)
Q Consensus 8 ~~~~~~~A~~~L~~L~~~~~n~~~i~~~----------------g~i~~Lv~~L~~~-----~-~~~~~~aa~~L~~l~~ 65 (572)
+......++.+|+||+..++....+... .++..|+..+..| + .+.-...|..+.|++.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 3346778899999999988887755533 2467777777662 2 2233567888999999
Q ss_pred CcchhHHHHhh---h--HHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHH---cCChHHHHHHHh
Q 008257 66 NSDVKVLVART---V--GSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIH---AGILPPLVKDLF 127 (572)
Q Consensus 66 ~~~~k~~i~~~---g--~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~---~G~i~~Lv~lL~ 127 (572)
..+.|+.+... . +..|+.++.+.+..-|..++.+++|++-+.+....+.. .+.+|.|+--|.
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 98888887643 2 35677777778878889999999999988888777774 456666655553
No 156
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.41 E-value=1.1 Score=40.15 Aligned_cols=148 Identities=11% Similarity=0.136 Sum_probs=88.5
Q ss_pred hHHHHHHhcC--CCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHH
Q 008257 219 TISLVQFVEA--PQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLG 296 (572)
Q Consensus 219 i~~Lv~lL~~--~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~ 296 (572)
+..++..|.. ..+++|..+.-++..+-+... +...+. .-..+-.++..++. +....+..++..|--..++
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~----~~~~~~--~~~~i~~~~~~~~~--d~~i~~~~~l~~lfp~~~d 76 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLDAAR----EEFKEK--ISDFIESLLDEGEM--DSLIIAFSALTALFPGPPD 76 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHHHHH----HHHHHH--HHHHHHHHHCCHHC--CHHHHHHHHHHHHCTTTHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHHHhH----HHHHHH--HHHHHHHHHccccc--hhHHHHHHHHHHHhCCCHH
Confidence 4445555543 456788888887776631111 112211 11223333444443 4555666666665444666
Q ss_pred HHH-HHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcH
Q 008257 297 LTR-QMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLD 375 (572)
Q Consensus 297 ~~~-~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 375 (572)
... .+..+|.++.++.+..... .+..++..++.+|..-+ .|...|..+.+.| ++.|-++++.+.++
T Consensus 77 v~~~l~~~eg~~~~l~~~~~~~~--------~~~~~~~~~lell~aAc----~d~~~r~~I~~~~-~~~L~~~~~~~~~~ 143 (157)
T PF11701_consen 77 VGSELFLSEGFLESLLPLASRKS--------KDRKVQKAALELLSAAC----IDKSCRTFISKNY-VSWLKELYKNSKDD 143 (157)
T ss_dssp HHHHHCCTTTHHHHHHHHHH-CT--------S-HHHHHHHHHHHHHHT----TSHHHHHCCHHHC-HHHHHHHTTTCC-H
T ss_pred HHHHHHhhhhHHHHHHHHHhccc--------CCHHHHHHHHHHHHHHH----ccHHHHHHHHHHH-HHHHHHHHccccch
Confidence 554 4458888998888887211 23455666777666555 4888888888876 59999999655366
Q ss_pred H-HHHHHHHHHHH
Q 008257 376 K-VQMVSATALEN 387 (572)
Q Consensus 376 ~-vk~~Aa~aL~~ 387 (572)
. +|..|+.+|.-
T Consensus 144 ~~ir~~A~v~L~K 156 (157)
T PF11701_consen 144 SEIRVLAAVGLCK 156 (157)
T ss_dssp H-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 6 89999988863
No 157
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=92.26 E-value=1.2 Score=42.78 Aligned_cols=101 Identities=21% Similarity=0.276 Sum_probs=76.5
Q ss_pred HHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCC-----HHHHHHHHHHHHHcCCCCChhHHHHHhcccCChh
Q 008257 190 CKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ-----NDLRLASIELIQNLSPHMGHELADALRGAVGQLG 264 (572)
Q Consensus 190 ~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~ 264 (572)
.+|+..|..++++++ .|..+.++...-.|.++|+..+ +.+|-.++..++.|.+.++.++...+..+ ..+|
T Consensus 68 cnaLaLlQ~vAshpe----tr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~t-Eiip 142 (262)
T PF04078_consen 68 CNALALLQCVASHPE----TRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQT-EIIP 142 (262)
T ss_dssp HHHHHHHHHHHH-TT----THHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCT-THHH
T ss_pred HHHHHHHHHHHcChH----HHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhh-chHH
Confidence 467777788888875 4888899999889999997543 36788999999999987777887788877 8999
Q ss_pred hHHhhhccCCCChHHHHHHHHHHhcCCCCcHHH
Q 008257 265 SLIRVISENVGISKEQAAAVGLLAELPERDLGL 297 (572)
Q Consensus 265 ~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~ 297 (572)
.-++.++.+++ --+..|..++..+-.++...
T Consensus 143 lcLr~me~Gse--lSKtvAtfIlqKIL~dd~GL 173 (262)
T PF04078_consen 143 LCLRIMEFGSE--LSKTVATFILQKILLDDVGL 173 (262)
T ss_dssp HHHHHHHHS-H--HHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHhccH--HHHHHHHHHHHHHHcchhHH
Confidence 99999999885 67788888888876644444
No 158
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.21 E-value=23 Score=40.61 Aligned_cols=469 Identities=17% Similarity=0.155 Sum_probs=223.3
Q ss_pred CCCCHHHHHHHHHHHHhhcc-CcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc---Cc-chhHHHHhhhHH
Q 008257 5 KSENLLTVEKAEKTLANLEK-CENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL---NS-DVKVLVARTVGS 79 (572)
Q Consensus 5 ~s~~~~~~~~A~~~L~~L~~-~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~---~~-~~k~~i~~~g~~ 79 (572)
++++...+......+...-. .++|-...-+.--++-|+--+..-+..+|..-...|- .+. +. ..+..+
T Consensus 477 kaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilE-yAVtvvncvPeqELl------ 549 (2799)
T KOG1788|consen 477 KAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILE-YAVTVVNCVPEQELL------ 549 (2799)
T ss_pred HhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHH-HHHhhhccCcHHHHH------
Confidence 45555555555555555543 5677666666667777777666666666655544442 111 10 111111
Q ss_pred HHHHhcccCC-HHHHHHHHHHHHHhhc-CCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHH--HHHHhcCCC
Q 008257 80 CLINIMKSGN-MQAREAALKALNQISS-CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATIL--ANVVNSGHD 155 (572)
Q Consensus 80 ~Lv~lL~s~~-~~~~~~A~~aL~~Ls~-~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L--~nla~~~~~ 155 (572)
.|--+|+.+- ...+.--+....+|-+ +..+++.+.|-|.+..|-..|+.+.---. ++ |.....-- .|.. +++
T Consensus 550 SLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~g-pd-qysgvsehydrnps--s~s 625 (2799)
T KOG1788|consen 550 SLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRG-PD-QYSGVSEHYDRNPS--SPS 625 (2799)
T ss_pred HHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccC-cc-hhhhHHHHhhcCCC--Cch
Confidence 2223343321 2333334444445555 44567778899999999888865310000 00 00000000 0000 000
Q ss_pred CCccccCCCccccchhhhHHHHHHHHhcCCh--hHHHHH------HHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhc
Q 008257 156 FDSITVGPDNQTLVSEDIVHNLLHLISNTGP--TIECKL------LQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE 227 (572)
Q Consensus 156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~--~~q~~a------~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~ 227 (572)
+++ .+.....+-.--.+..+++. .+.+.. -.+|..+-+++ .++.+.++++.|+..+++++
T Consensus 626 f~~--------~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnn---teNqklFreanGvklilpfl- 693 (2799)
T KOG1788|consen 626 FKQ--------HLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNN---TENQKLFREANGVKLILPFL- 693 (2799)
T ss_pred hhh--------ccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhcc---chhhHHHHhhcCceEEEEee-
Confidence 000 00000001000111122111 111111 11233333433 35678899999999998888
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC--C--------hHHHHHHHHHHhcCCCCcHHH
Q 008257 228 APQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG--I--------SKEQAAAVGLLAELPERDLGL 297 (572)
Q Consensus 228 ~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~--~--------~~~~~~A~~~L~~L~~~~~~~ 297 (572)
-+++-|..-++++.+|-..++..+ .. .-+..||..|.++-. + -......+++++.+...+...
T Consensus 694 -indehRSslLrivscLitvdpkqv----hh--qelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsa 766 (2799)
T KOG1788|consen 694 -INDEHRSSLLRIVSCLITVDPKQV----HH--QELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSA 766 (2799)
T ss_pred -echHHHHHHHHHHHHHhccCcccc----cH--HHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchh
Confidence 345567777888888875443322 10 124566777766321 0 134566677888876556666
Q ss_pred HHHHHhCCChHHHHHHHhhhccC-CCCCCcchhhHHHHHHHHHHHH-hccCCCChHHHHHHHHcCchHHHHHHhccCC--
Q 008257 298 TRQMLDEGAFGLIFSRVKSIQLG-ETRGSRFVTPFLEGLLSVLARV-TFVLSDEPDAIALCCEHNLAALFIELLQSNG-- 373 (572)
Q Consensus 298 ~~~l~~~g~l~~Lv~lL~~~~~~-~~~~~~~~~~~~e~a~~aL~~l-~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-- 373 (572)
++.+.++|++..|...|..-+.- +.......+..+ .....|+++ +.....++.+++.+.-.=.-..+.+||+-.+
T Consensus 767 qrvFgeatGFslLlttLhtfqgftelhdesDlcvyi-klfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgll 845 (2799)
T KOG1788|consen 767 QRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYI-KLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLL 845 (2799)
T ss_pred eeehhccccHHHHHHHHHHhccchhcCCchhhhhHH-HHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccc
Confidence 67899999999999988753310 000111122222 233444432 1000135555544332222233444444331
Q ss_pred cHHHHHHHHHHHHHhhhhc---cccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHH
Q 008257 374 LDKVQMVSATALENLSLES---KNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIA 450 (572)
Q Consensus 374 ~~~vk~~Aa~aL~~ls~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~ 450 (572)
..+..++....|..++... +.++.. .. .|..++..- ... -......|--. ...-.+..+|++..|++
T Consensus 846 cvnler~viqlllElalevlvppfLtSE-sa----AcaeVfele---dni-favntPsGqfn-pdk~~iynagavRvlir 915 (2799)
T KOG1788|consen 846 CVNLERHVIQLLLELALEVLVPPFLTSE-SA----ACAEVFELE---DNI-FAVNTPSGQFN-PDKQKIYNAGAVRVLIR 915 (2799)
T ss_pred eecchHHHHHHHHHHHHHhhCCchhhhh-HH----HHHHHhhcc---cce-eeeccCCCCcC-chHhhhcccchhHHHHH
Confidence 1111222222222222111 000000 00 000000000 000 00000000000 01112458999999999
Q ss_pred hhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhh--cCCHHHHHHHHHHHHHHH
Q 008257 451 LLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLE--KRTENLQRRAVWVVERIL 517 (572)
Q Consensus 451 lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~~~~~~a~~~l~~l~ 517 (572)
.+-...++.+..-++.+..++.-.+ .+++.....|.+..|++++.. +++...-..+..+++-++
T Consensus 916 slLlnypK~qlefl~lleSlaRasp---fnaelltS~gcvellleIiypflsgsspfLshalkIvemLg 981 (2799)
T KOG1788|consen 916 SLLLNYPKLQLEFLNLLESLARASP---FNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLG 981 (2799)
T ss_pred HHHhhChHHHHHHHHHHHHHhhcCC---CchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHHh
Confidence 9988889999999998888886544 346677788999888887732 444555566666665444
No 159
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.68 E-value=0.62 Score=37.93 Aligned_cols=66 Identities=18% Similarity=0.220 Sum_probs=49.8
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHHHcc--hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257 490 IKPILDVLLEKRTENLQRRAVWVVERILRT--DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK 560 (572)
Q Consensus 490 i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~ 560 (572)
+++++..+ ++++..+|..|..+|.++++. ++.-..|.. -+ ..|.++..+.+++||. ++..|-+|-+
T Consensus 29 l~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~--IF-~~L~kl~~D~d~~Vr~-~a~~Ld~llk 96 (97)
T PF12755_consen 29 LPPVLKCF-DDQDSRVRYYACEALYNISKVARGEILPYFNE--IF-DALCKLSADPDENVRS-AAELLDRLLK 96 (97)
T ss_pred HHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHcCCchhHHH-HHHHHHHHhc
Confidence 58888999 699999999999999999976 333333433 23 4889999999999885 4566666543
No 160
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.17 E-value=6.1 Score=39.54 Aligned_cols=163 Identities=18% Similarity=0.169 Sum_probs=103.4
Q ss_pred CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcc--hhHH-------HH
Q 008257 4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSD--VKVL-------VA 74 (572)
Q Consensus 4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~--~k~~-------i~ 74 (572)
.+|+|+.+++.|.+.|.-.+--+. .+++. .++.+...++.++.++|..|..++.++....+ .-.. ..
T Consensus 36 v~~~~~~vR~~al~cLGl~~Lld~---~~a~~-~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 36 VQSSDPAVRELALKCLGLCCLLDK---ELAKE-HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred hcCCCHHHHHHHHHHHHHHHHhCh---HHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 478899999999999999987554 33333 35677777788899999999999999765222 1111 12
Q ss_pred hhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC
Q 008257 75 RTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG 153 (572)
Q Consensus 75 ~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~ 153 (572)
...+ ..+.+.|.++++++|..|+..+.+|-....... ....+..|+-+..++.. .....+|+.-...+-..+.++
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t-~~~~~LrQ~L~~Ffp~y~~s~ 187 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPST-EDNQRLRQCLSVFFPVYASSS 187 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCccc-CCcHHHHHHHHHHHHHHHcCC
Confidence 2355 788899999999999999999999887654332 13344555554444321 122455554444444445433
Q ss_pred CCCCccccCCCccccchhhhHHHHHHHHhc
Q 008257 154 HDFDSITVGPDNQTLVSEDIVHNLLHLISN 183 (572)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~ 183 (572)
... +....+.++|.+-.+.+.
T Consensus 188 ~~~---------Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 188 PEN---------QERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHH---------HHHHHHHHHHHHHHHHhC
Confidence 211 233445566666665553
No 161
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=91.03 E-value=0.14 Score=52.52 Aligned_cols=189 Identities=14% Similarity=0.067 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHhhcCCCcHHHH-HHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCc-cc
Q 008257 90 MQAREAALKALNQISSCEPSAKVL-IHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDN-QT 167 (572)
Q Consensus 90 ~~~~~~A~~aL~~Ls~~~~~~~~i-v~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~-~~ 167 (572)
.-++..|.+++..+..++..+... .-..+-......|.+. ....|++++|+++||...= ++..- ..
T Consensus 405 ~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~-----~ln~r~KaawtlgnITdAL-------~~~~Ps~~ 472 (728)
T KOG4535|consen 405 RLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK-----SLNVRAKAAWSLGNITDAL-------IVNMPTPD 472 (728)
T ss_pred HHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH-----hHhHHHHHHHHhhhhHHHH-------HcCCCCch
Confidence 345667777777777777665433 2344444445555442 2678999999999996421 00000 00
Q ss_pred cchhhhHHHH-HHHHh------cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC-CHHHHHHHHH
Q 008257 168 LVSEDIVHNL-LHLIS------NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP-QNDLRLASIE 239 (572)
Q Consensus 168 l~~~~~i~~L-v~lL~------~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~ 239 (572)
-..+.++..+ .+++. .....++.++.++|.++.+.-...++.--...+.|.+..++.-.-.+ .-.||=+++-
T Consensus 473 s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCy 552 (728)
T KOG4535|consen 473 SFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACY 552 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHH
Confidence 0122233332 33443 24567888999999888764211001111112334444444333222 3578999999
Q ss_pred HHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCC
Q 008257 240 LIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPE 292 (572)
Q Consensus 240 ~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~ 292 (572)
++.||-++..-..+.. .-..-..+.|..++.+-.+ -+++..|+++|..-..
T Consensus 553 a~gNLfkn~a~~lq~~-~wA~~~F~~L~~Lv~~~~N-FKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 553 AMGNLFKNPALPLQTA-PWASQAFNALTSLVTSCKN-FKVRIRAAAALSVPGK 603 (728)
T ss_pred HHHHhhcCccccccCC-CchHHHHHHHHHHHHHhcc-ceEeehhhhhhcCCCC
Confidence 9999987732211111 1111356788888877765 3788888888876544
No 162
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=90.81 E-value=3.9 Score=43.13 Aligned_cols=125 Identities=16% Similarity=0.197 Sum_probs=84.4
Q ss_pred ChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccch----hhhHHHHHHHHhcCChhHHHHHH
Q 008257 118 ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVS----EDIVHNLLHLISNTGPTIECKLL 193 (572)
Q Consensus 118 ~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~----~~~i~~Lv~lL~~~~~~~q~~a~ 193 (572)
.+..|+++|++ +.+...+|..+.-+....++.....-+.+.+.+.. ..++|.|++-.+..+.+.+.+.+
T Consensus 272 ~~~~L~~lL~~-------~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL 344 (415)
T PF12460_consen 272 LLDKLLELLSS-------PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYL 344 (415)
T ss_pred HHHHHHHHhCC-------hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHH
Confidence 35667888864 56788999999999876333221111111122222 34788888888888888899999
Q ss_pred HHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhH
Q 008257 194 QVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHEL 252 (572)
Q Consensus 194 ~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~ 252 (572)
.+|..+-.+-.. .-+...+ ...+|.|++-|..++.+++..++.+|..+..+.++-+
T Consensus 345 ~ALs~ll~~vP~-~vl~~~l--~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i 400 (415)
T PF12460_consen 345 TALSHLLKNVPK-SVLLPEL--PTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELI 400 (415)
T ss_pred HHHHHHHhhCCH-HHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHH
Confidence 999988875332 1222221 3478889999999999999999999999887754333
No 163
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.77 E-value=2.3 Score=48.86 Aligned_cols=158 Identities=16% Similarity=0.189 Sum_probs=117.8
Q ss_pred HHHHHhcc----cCCHHHHHHHHHHHHHhhcCC-CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC
Q 008257 79 SCLINIMK----SGNMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG 153 (572)
Q Consensus 79 ~~Lv~lL~----s~~~~~~~~A~~aL~~Ls~~~-~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~ 153 (572)
|.+++.++ .++|+.|.+|.-||..+..-. +.+ .--+|.|+..+... +++.+|.+++-.++-++-.-
T Consensus 922 piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeks----p~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 922 PIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKS----PSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcC----CCceeeecchheccchhhhc
Confidence 77888884 467999999999999998633 223 23679999999732 34899999999999987643
Q ss_pred CCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHH
Q 008257 154 HDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDL 233 (572)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 233 (572)
++. -+..-+.|.+.|..+++.++..|+.+|..|-.+. .|.-.|-++-+...+.++++++
T Consensus 993 pnl-------------ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--------miKVKGql~eMA~cl~D~~~~I 1051 (1251)
T KOG0414|consen 993 PNL-------------IEPWTEHLYRRLRDESPSVRKTALLVLSHLILND--------MIKVKGQLSEMALCLEDPNAEI 1051 (1251)
T ss_pred ccc-------------cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh--------hhHhcccHHHHHHHhcCCcHHH
Confidence 221 1345677888888999999999999999986553 3344789999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCC
Q 008257 234 RLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENV 274 (572)
Q Consensus 234 ~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~ 274 (572)
+..|-..+..|+... +.+ . ..+|-++.-|++++
T Consensus 1052 sdlAk~FF~Els~k~-n~i----y---nlLPdil~~Ls~~~ 1084 (1251)
T KOG0414|consen 1052 SDLAKSFFKELSSKG-NTI----Y---NLLPDILSRLSNGN 1084 (1251)
T ss_pred HHHHHHHHHHhhhcc-cch----h---hhchHHHHhhccCc
Confidence 999988888888653 222 2 35566666666654
No 164
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=90.71 E-value=1.7 Score=39.84 Aligned_cols=93 Identities=17% Similarity=0.115 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhccc
Q 008257 8 NLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKS 87 (572)
Q Consensus 8 ~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s 87 (572)
||.++..+..++..|+..-.+.. + .+++.+...|+++++.+|..|...|.+|...+-.|.. ......++.+|..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v---e-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k--~~l~~~~l~~l~D 74 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV---E-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK--GQLFSRILKLLVD 74 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH---H-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh--hhhhHHHHHHHcC
Confidence 67888999999999998654433 2 3678899999999999999999999999876543332 1122667778888
Q ss_pred CCHHHHHHHHHHHHHhhcC
Q 008257 88 GNMQAREAALKALNQISSC 106 (572)
Q Consensus 88 ~~~~~~~~A~~aL~~Ls~~ 106 (572)
++++++..|..++..+...
T Consensus 75 ~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 75 ENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999975
No 165
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.63 E-value=2.7 Score=45.99 Aligned_cols=156 Identities=14% Similarity=0.245 Sum_probs=90.7
Q ss_pred CChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHh-----c------CC
Q 008257 117 GILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS-----N------TG 185 (572)
Q Consensus 117 G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~-----~------~~ 185 (572)
|.+--.+++|++++ .+++..+..+...|+.+. .+..++.+|+ . ..
T Consensus 317 ~l~mDvLrvLss~d-----ldvr~Ktldi~ldLvssr-------------------Nvediv~~Lkke~~kT~~~e~d~~ 372 (948)
T KOG1058|consen 317 GLIMDVLRVLSSPD-----LDVRSKTLDIALDLVSSR-------------------NVEDIVQFLKKEVMKTHNEESDDN 372 (948)
T ss_pred HHHHHHHHHcCccc-----ccHHHHHHHHHHhhhhhc-------------------cHHHHHHHHHHHHHhccccccccc
Confidence 44455566776653 788888888888887643 2555555554 1 12
Q ss_pred hhHHHHHHHHHHHccCC-CCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChh
Q 008257 186 PTIECKLLQVLVGLTSS-PTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLG 264 (572)
Q Consensus 186 ~~~q~~a~~aL~~l~~~-~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~ 264 (572)
...++-.++++...+.. ++ . .+..|+.|++++.+.++..-...+..++..-...+ . ++. ..+.
T Consensus 373 ~~yRqlLiktih~cav~Fp~----~-----aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p-~----Lr~--~ii~ 436 (948)
T KOG1058|consen 373 GKYRQLLIKTIHACAVKFPE----V-----AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP-N----LRA--SIIE 436 (948)
T ss_pred hHHHHHHHHHHHHHhhcChH----H-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc-h----HHH--HHHH
Confidence 34567788899888764 42 2 14478999999988887654444444443322211 1 222 2344
Q ss_pred hHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHH--HHH--hCCChHHHHHH
Q 008257 265 SLIRVISENVGISKEQAAAVGLLAELPERDLGLTR--QML--DEGAFGLIFSR 313 (572)
Q Consensus 265 ~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~--~l~--~~g~l~~Lv~l 313 (572)
.|++-+..-.+ .+....|+|+++.-+....+++. ..+ ..|-+|.+-.=
T Consensus 437 ~l~~~~~~irS-~ki~rgalwi~GeYce~~~~i~~~~k~i~~slGEvp~~~se 488 (948)
T KOG1058|consen 437 KLLETFPQIRS-SKICRGALWILGEYCEGLSEIQSVIKIIRQSLGEVPIVCSE 488 (948)
T ss_pred HHHHhhhhhcc-cccchhHHHHHHHHHhhhHHHHHHHHHHHHhccccceehHH
Confidence 44444432221 25667788999887776654443 222 34777766544
No 166
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=90.27 E-value=9.6 Score=36.71 Aligned_cols=88 Identities=14% Similarity=0.175 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHHcCCCC
Q 008257 171 EDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP--QNDLRLASIELIQNLSPHM 248 (572)
Q Consensus 171 ~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~Ls~~~ 248 (572)
+..|..|++-+..++.-+|..++.+|..|-+ .-+||.|.+-|... ++-||..|+.+|..+++.
T Consensus 186 EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--------------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e- 250 (289)
T KOG0567|consen 186 EEAINALIDGLADDSALFRHEVAFVFGQLQS--------------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE- 250 (289)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhccc--------------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-
Confidence 4467777777776777777777776655532 33688888888654 467999999999887644
Q ss_pred ChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHH
Q 008257 249 GHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLL 287 (572)
Q Consensus 249 ~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L 287 (572)
+ +++.|.+++..+.+ -++..+..+|
T Consensus 251 --~----------~~~vL~e~~~D~~~--vv~esc~val 275 (289)
T KOG0567|consen 251 --D----------CVEVLKEYLGDEER--VVRESCEVAL 275 (289)
T ss_pred --H----------HHHHHHHHcCCcHH--HHHHHHHHHH
Confidence 2 45666666666664 4554444444
No 167
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=89.91 E-value=8.6 Score=40.75 Aligned_cols=155 Identities=18% Similarity=0.244 Sum_probs=111.1
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC-CCCC
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG-HDFD 157 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~-~~~~ 157 (572)
..+.+.+.+++...|..|.+-|..++.+.......+...++..|.++..+++. -...++...+..++..+-.++ .+|+
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~-~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRV-CMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCcc-chHHHHHHHHHHHHHHHHhhceeeee
Confidence 57889999999999988999999999999999999999999999999987530 012344455555555554432 2233
Q ss_pred ccccCCCccccchhhhHHHHHHHHhc--CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHH
Q 008257 158 SITVGPDNQTLVSEDIVHNLLHLISN--TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRL 235 (572)
Q Consensus 158 ~~~~~~~~~~l~~~~~i~~Lv~lL~~--~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 235 (572)
. ....+|.....+.+. .+..+-..|+..|-++...+. ..+..+.+.--+..|+..++..+..++.
T Consensus 165 ~----------~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~---~~~~~v~eev~i~~li~hlq~~n~~i~~ 231 (713)
T KOG2999|consen 165 S----------VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSD---TLRQLVAEEVPIETLIRHLQVSNQRIQT 231 (713)
T ss_pred e----------cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCCh---HHHHHHHhcCcHHHHHHHHHhcchHHHH
Confidence 2 233455555555432 234456677777777766653 3567788899999999999999999998
Q ss_pred HHHHHHHHcCCC
Q 008257 236 ASIELIQNLSPH 247 (572)
Q Consensus 236 ~a~~~L~~Ls~~ 247 (572)
.|..++..+-..
T Consensus 232 ~aial~nal~~~ 243 (713)
T KOG2999|consen 232 CAIALLNALFRK 243 (713)
T ss_pred HHHHHHHHHHhh
Confidence 888888887644
No 168
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=89.18 E-value=8.6 Score=40.76 Aligned_cols=139 Identities=12% Similarity=0.141 Sum_probs=97.0
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCH----HHHHHHHHHHHHcCC
Q 008257 171 EDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQN----DLRLASIELIQNLSP 246 (572)
Q Consensus 171 ~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~v~~~a~~~L~~Ls~ 246 (572)
+.....+++++.+++...|..+...|..++.+. .....+..+.|+..|..+.++++. ++...++.++..+-.
T Consensus 82 ~~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~----~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elme 157 (713)
T KOG2999|consen 82 SHYAKRIMEILTEGNNISKMEALKELDSLSLDP----TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELME 157 (713)
T ss_pred hHHHHHHHHHHhCCCcHHHHHHHHHHhhccccH----HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHh
Confidence 446778899999999999988999999998886 466778889999999999998764 566666777766654
Q ss_pred CCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhh
Q 008257 247 HMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS 316 (572)
Q Consensus 247 ~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~ 316 (572)
+.- -..+.+.. .++.....+..-...-..+-..|+..|.++..+++...+.+.++--+..|+..|+.
T Consensus 158 hgv-vsW~~~~~--~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~ 224 (713)
T KOG2999|consen 158 HGV-VSWESVSN--DFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQV 224 (713)
T ss_pred hce-eeeeeccc--HHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHh
Confidence 411 00011111 12333333332111102456778899999988887777888999999999999986
No 169
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=89.11 E-value=2.6 Score=38.78 Aligned_cols=73 Identities=14% Similarity=0.304 Sum_probs=55.8
Q ss_pred HHhhhH-HHHHHhccc---------CCHHHHHHHHHHHHHhhcCCCcHHHHH-HcCChHHHHHHHhccCCCCCCcchHHH
Q 008257 73 VARTVG-SCLINIMKS---------GNMQAREAALKALNQISSCEPSAKVLI-HAGILPPLVKDLFTVGSNHLPMRLKEV 141 (572)
Q Consensus 73 i~~~g~-~~Lv~lL~s---------~~~~~~~~A~~aL~~Ls~~~~~~~~iv-~~G~i~~Lv~lL~s~~~~~~~~~~~~~ 141 (572)
+.+.|| ..|+++|.. .+.+.+..+++||+.|..+......++ ..+++..|+..|.+++ ..++..
T Consensus 103 Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~-----~~~r~~ 177 (187)
T PF06371_consen 103 FLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPN-----IKTRKL 177 (187)
T ss_dssp H-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTS-----HHHHHH
T ss_pred hccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCC-----HHHHHH
Confidence 334455 999988853 334778899999999998776677776 7899999999998753 789999
Q ss_pred HHHHHHHHH
Q 008257 142 SATILANVV 150 (572)
Q Consensus 142 aa~~L~nla 150 (572)
+..+|+.+|
T Consensus 178 ~leiL~~lc 186 (187)
T PF06371_consen 178 ALEILAALC 186 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998876
No 170
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.73 E-value=30 Score=40.32 Aligned_cols=225 Identities=14% Similarity=0.138 Sum_probs=128.4
Q ss_pred CCCCHHHHHHHHHHHHhhccCcchHHHHHHc--CCcHHHHHHHccCCHHHHHHHHHHHHHhcc--CcchhHHHHhhhH-H
Q 008257 5 KSENLLTVEKAEKTLANLEKCENNVRQMAEN--GRLQPLLTQILEGPQETKLSLAAFLGDLAL--NSDVKVLVARTVG-S 79 (572)
Q Consensus 5 ~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~--g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~--~~~~k~~i~~~g~-~ 79 (572)
++.++-+|.++-++|..|+..+......... -....|..-+++.+...|.....+|..+.. +.+....+.+ -+ .
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k-~I~E 742 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK-LIPE 742 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHH
Confidence 5567889999999999999874443222111 122333344444555566667777777654 3344455443 34 5
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcC------ChHHHHHHHhccCCCCCCcchHHHHH--HHHHHHHh
Q 008257 80 CLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAG------ILPPLVKDLFTVGSNHLPMRLKEVSA--TILANVVN 151 (572)
Q Consensus 80 ~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G------~i~~Lv~lL~s~~~~~~~~~~~~~aa--~~L~nla~ 151 (572)
.++.+ +.-+...++.|..+|..|.. .....+.| .|...+..++.+-.+ ...+..|. -++..+..
T Consensus 743 vIL~~-Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~g---d~~~~~as~Ivai~~il~ 814 (1176)
T KOG1248|consen 743 VILSL-KEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVG---DSTRVVASDIVAITHILQ 814 (1176)
T ss_pred HHHhc-ccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcc---cHHHHHHHHHHHHHHHHH
Confidence 55555 88888899999999999884 22222333 566666666544101 12222222 23333332
Q ss_pred cCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCH
Q 008257 152 SGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQN 231 (572)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 231 (572)
...+ .+| .-.-.+.+..+...|.+.++++...|++.+..++..-.. ..-.-.....+|.+..|+.....
T Consensus 815 e~~~----~ld----~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe---~~l~~~~~~LL~sll~ls~d~k~ 883 (1176)
T KOG1248|consen 815 EFKN----ILD----DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE---ECLSPHLEELLPSLLALSHDHKI 883 (1176)
T ss_pred HHhc----ccc----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH---HHHhhhHHHHHHHHHHHHHhhhH
Confidence 2110 000 011233444555555688999999999999888765321 11111122367788887777677
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 008257 232 DLRLASIELIQNLSPHMG 249 (572)
Q Consensus 232 ~v~~~a~~~L~~Ls~~~~ 249 (572)
.+|...-.+|..|.+..+
T Consensus 884 ~~r~Kvr~LlekLirkfg 901 (1176)
T KOG1248|consen 884 KVRKKVRLLLEKLIRKFG 901 (1176)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 788887777777765433
No 171
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=88.04 E-value=5.9 Score=38.34 Aligned_cols=99 Identities=12% Similarity=0.077 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH-cchhhhhhhcCCCCchHHH
Q 008257 458 KVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL-RTDDIAYEVSGDPNVSTAL 536 (572)
Q Consensus 458 ~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~L 536 (572)
.....|++.|-.++.-++ .+.....+..++..++++|....++.++..+..+|..+. .++.+.+.|...+|+. .+
T Consensus 106 ~li~~aL~vLQGl~LLHp---~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~-~v 181 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHP---PSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLS-TV 181 (257)
T ss_pred HHHHHHHHHHHHHHHcCc---hHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHH-HH
Confidence 346668888888887655 456788899999999999954567888888888877666 6688888999888995 89
Q ss_pred HHHhhcCC--chhHHHHHHHHHhhcc
Q 008257 537 VDAFQHAD--YRTRQIAERALKHIDK 560 (572)
Q Consensus 537 v~ll~~~~--~~~~~~Aa~aL~~L~~ 560 (572)
+.++++.+ .++|-|...-|.-+-.
T Consensus 182 ~~llk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 182 CSLLKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HHHHccccccHHHhHHHHHHHHHHHc
Confidence 99998765 4676677666655443
No 172
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=87.98 E-value=39 Score=39.04 Aligned_cols=159 Identities=19% Similarity=0.150 Sum_probs=88.5
Q ss_pred CChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHH
Q 008257 217 GATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLG 296 (572)
Q Consensus 217 g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~ 296 (572)
+.+..|..-|++.+..+|=.|++-+..++.+.+.+.++.+. ...++++...++-..-+ -|.-+|+.++...--
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi------~svid~~~p~e~~~aWH-gacLaLAELA~rGlL 413 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVI------GSVIDLFNPAEDDSAWH-GACLALAELALRGLL 413 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHH------HHHHHhcCcCCchhHHH-HHHHHHHHHHhcCCc
Confidence 56778888888999999999999999999887777655544 34445444333201222 333444444331100
Q ss_pred HHHHHHhCCChHHHHHHHhh-hccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcH
Q 008257 297 LTRQMLDEGAFGLIFSRVKS-IQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLD 375 (572)
Q Consensus 297 ~~~~l~~~g~l~~Lv~lL~~-~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 375 (572)
.-..+ ..++|.++.-|.= ...|.+. ....+++.|.-++|.++.. .+|.-.+-+...=+--+|+.-+.++ ..
T Consensus 414 lps~l--~dVvplI~kaL~Yd~~~G~~s---~G~~VRDaAcY~~WAf~Ra--ys~~~l~p~l~~L~s~LL~~AlFDr-ev 485 (1133)
T KOG1943|consen 414 LPSLL--EDVVPLILKALHYDVRRGQHS---VGQHVRDAACYVCWAFARA--YSPSDLKPVLQSLASALLIVALFDR-EV 485 (1133)
T ss_pred chHHH--HHHHHHHHHHhhhhhhhcccc---cccchHHHHHHHHHHHHhc--CChhhhhHHHHHHHHHHHHHHhcCc-hh
Confidence 00000 1234444444431 1223221 2345677766666666644 3454444333322333455666677 78
Q ss_pred HHHHHHHHHHHHhhh
Q 008257 376 KVQMVSATALENLSL 390 (572)
Q Consensus 376 ~vk~~Aa~aL~~ls~ 390 (572)
..|+.|+.|+....+
T Consensus 486 ncRRAAsAAlqE~VG 500 (1133)
T KOG1943|consen 486 NCRRAASAALQENVG 500 (1133)
T ss_pred hHhHHHHHHHHHHhc
Confidence 899999999876654
No 173
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=87.63 E-value=3.9 Score=45.83 Aligned_cols=185 Identities=17% Similarity=0.182 Sum_probs=112.5
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCCc---HH------HHH----HcCChHHHHHHHhccCCCCCCcchHHHHHHH
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEPS---AK------VLI----HAGILPPLVKDLFTVGSNHLPMRLKEVSATI 145 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~---~~------~iv----~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~ 145 (572)
..|+++|+++ +.-..|++++.-+..+... +. .+. =+..+|.|++...+. +...|..=..+
T Consensus 818 ~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~-----~~~~K~~yl~~ 890 (1030)
T KOG1967|consen 818 EKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETA-----PGSQKHNYLEA 890 (1030)
T ss_pred HHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccC-----CccchhHHHHH
Confidence 6777777752 3333455555555544221 11 111 246789999888742 36778888888
Q ss_pred HHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHH
Q 008257 146 LANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQF 225 (572)
Q Consensus 146 L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~l 225 (572)
|.++-.+-+.. .... .-+...|.|++-|..++..+|...++++.-+...... +... .-.-.+|.++.+
T Consensus 891 LshVl~~vP~~--vllp------~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t---L~t~-~~~Tlvp~lLsl 958 (1030)
T KOG1967|consen 891 LSHVLTNVPKQ--VLLP------QFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET---LQTE-HLSTLVPYLLSL 958 (1030)
T ss_pred HHHHHhcCCHH--hhcc------chhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc---cchH-HHhHHHHHHHhc
Confidence 88887643321 1111 1244677788888899999999999988776554322 1111 001246666666
Q ss_pred hcCCC---HHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHH
Q 008257 226 VEAPQ---NDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGL 286 (572)
Q Consensus 226 L~~~~---~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~ 286 (572)
-.+.+ ..+|+.|+..|..|.+..+...-...+. -.+..|.+.|+.+.. .+|..|+.+
T Consensus 959 s~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~--~Vl~al~k~LdDkKR--lVR~eAv~t 1018 (1030)
T KOG1967|consen 959 SSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRP--LVLRALIKILDDKKR--LVRKEAVDT 1018 (1030)
T ss_pred CCCCCcchhHHHHHHHHHHHHHhccCCCcccccccH--HHHHHhhhccCcHHH--HHHHHHHHH
Confidence 55555 4789999999999987433322112222 356677888888775 788888765
No 174
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=87.54 E-value=41 Score=35.42 Aligned_cols=363 Identities=18% Similarity=0.183 Sum_probs=184.0
Q ss_pred HHHHHhcccCCH---HHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257 79 SCLINIMKSGNM---QAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD 155 (572)
Q Consensus 79 ~~Lv~lL~s~~~---~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~ 155 (572)
|.|...|...+. ...+..+.+|..++.+.+-.+.++- ..+..|-....+. .+.+.-.....+|.++......
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~----~~~~~~~~il~tl~~~~~~~~~ 76 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSE----SSSDYCHAILSTLQSLLEKKQE 76 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCC----CChHHHHHHHHHHHHHHHhccc
Confidence 567777876544 5578999999999998776555433 3333333333321 1245556677777777654332
Q ss_pred CCccccCCCccccchhhhHHHHHHHHhcC-----C--hhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhc-
Q 008257 156 FDSITVGPDNQTLVSEDIVHNLLHLISNT-----G--PTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE- 227 (572)
Q Consensus 156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~-----~--~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~- 227 (572)
... +..........+++.++++.... + +.+-..+.+.+..+...-.. +-++.+ +..++.+..
T Consensus 77 ~~~---~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~--~~q~~~-----~~~~~~lf~~ 146 (415)
T PF12460_consen 77 DKQ---FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSP--EKQQEI-----LDELYSLFLS 146 (415)
T ss_pred ccc---cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCH--HHHHHH-----HHHHHHHHcc
Confidence 110 00111223344788888887532 1 23333334444433333221 122222 333333332
Q ss_pred ---------CC------CHHHHHHHHHHHHHcCCCCC-hhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCC
Q 008257 228 ---------AP------QNDLRLASIELIQNLSPHMG-HELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELP 291 (572)
Q Consensus 228 ---------~~------~~~v~~~a~~~L~~Ls~~~~-~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~ 291 (572)
.. ......-...++..+-+.-. .+. . ..+..++.+..+.++ +..+..+...++.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~----~---~ll~~l~~~~~~~~~-~~~~~~~~~~la~Lv 218 (415)
T PF12460_consen 147 PKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDL----E---ELLQSLLNLALSSED-EFSRLAALQLLASLV 218 (415)
T ss_pred ccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCH----H---HHHHHHHHHHHcCCC-hHHHHHHHHHHHHHH
Confidence 11 11112222334444443211 111 1 245667777666654 477777777777765
Q ss_pred CC--cHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHh
Q 008257 292 ER--DLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELL 369 (572)
Q Consensus 292 ~~--~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL 369 (572)
.. +.+..+ ..+..+...+... .. ........+..+|..-.+.-. .+|...+ .+..|+++|
T Consensus 219 NK~~~~~~l~-----~~l~~~~~~~~~~--~~---~~~~~~~~~~~~Wi~KaLv~R--~~~~~~~------~~~~L~~lL 280 (415)
T PF12460_consen 219 NKWPDDDDLD-----EFLDSLLQSISSS--ED---SELRPQALEILIWITKALVMR--GHPLATE------LLDKLLELL 280 (415)
T ss_pred cCCCChhhHH-----HHHHHHHhhhccc--CC---cchhHHHHHHHHHHHHHHHHc--CCchHHH------HHHHHHHHh
Confidence 43 111111 1222222222000 00 001111222222222222211 2444333 346677777
Q ss_pred ccCCcHHHHHHHHHHHHHhhhhccc-cCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHH
Q 008257 370 QSNGLDKVQMVSATALENLSLESKN-LTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKL 448 (572)
Q Consensus 370 ~~~~~~~vk~~Aa~aL~~ls~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~L 448 (572)
.++ ++...||.++.-+....+. +.+. .. ...+.+ -++.|+ ...+|+|
T Consensus 281 ~~~---~~g~~aA~~f~il~~d~~~~l~~~-~~-------a~vklL------------------ykQR~F---~~~~p~L 328 (415)
T PF12460_consen 281 SSP---ELGQQAAKAFGILLSDSDDVLNKE-NH-------ANVKLL------------------YKQRFF---TQVLPKL 328 (415)
T ss_pred CCh---hhHHHHHHHHhhHhcCcHHhcCcc-cc-------chhhhH------------------HhHHHH---HHHHHHH
Confidence 774 5777899999888765222 2110 00 000000 012222 2378999
Q ss_pred HHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhc-CChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257 449 IALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEA-QGIKPILDVLLEKRTENLQRRAVWVVERILRT 519 (572)
Q Consensus 449 v~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~-g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~ 519 (572)
++-.+..+.+.+..-+.||..+..+-+ ... .+-+. .-+|.|++-| +.+|.+++..+..+|..+...
T Consensus 329 ~~~~~~~~~~~k~~yL~ALs~ll~~vP---~~v-l~~~l~~LlPLLlqsL-~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 329 LEGFKEADDEIKSNYLTALSHLLKNVP---KSV-LLPELPTLLPLLLQSL-SLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred HHHHhhcChhhHHHHHHHHHHHHhhCC---HHH-HHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHc
Confidence 999999888899999999999997643 111 11121 2356678888 588999999999999888855
No 175
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=87.45 E-value=21 Score=36.81 Aligned_cols=193 Identities=19% Similarity=0.142 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHH-HHHHH-HHHHHHhccCcchhHHHHhhhH-HHHHHhcc
Q 008257 10 LTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQE-TKLSL-AAFLGDLALNSDVKVLVARTVG-SCLINIMK 86 (572)
Q Consensus 10 ~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~-~~~~a-a~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~ 86 (572)
.+++.+.--|..-..+++++..++..|.++.+++.+...+.+ .-..+ +..+.-+..+..+-..+...+. ..++++|+
T Consensus 37 s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 37 SVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLLDRDSLRLLLKLLK 116 (361)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhhchhHHHHHHHHhc
Confidence 455555555555555899999999999999999998654433 32222 2223222222222222222222 33333333
Q ss_pred --------------------------------------------cCCHHHHHHHHHHHHHhh---------c------CC
Q 008257 87 --------------------------------------------SGNMQAREAALKALNQIS---------S------CE 107 (572)
Q Consensus 87 --------------------------------------------s~~~~~~~~A~~aL~~Ls---------~------~~ 107 (572)
.....-+.-|..++..++ . .+
T Consensus 117 ~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~ 196 (361)
T PF07814_consen 117 VDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSLREAGDLSETSSRAGE 196 (361)
T ss_pred cccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHHhhcccchhhhhhccc
Confidence 011122445666666662 0 12
Q ss_pred CcHHHHHHcCChHHHHHHHhc----cC-----CC--CCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHH
Q 008257 108 PSAKVLIHAGILPPLVKDLFT----VG-----SN--HLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHN 176 (572)
Q Consensus 108 ~~~~~iv~~G~i~~Lv~lL~s----~~-----~~--~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~ 176 (572)
-.++.+.+.||+..++.++.. .. .+ ......-+.+..+|.|.+......+...+...+.. .....+.
T Consensus 197 ~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~--l~~~~~~ 274 (361)
T PF07814_consen 197 WFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYLLSHRSSL--LPQLLST 274 (361)
T ss_pred cchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHHHHhcccc--hHHHHHH
Confidence 236677788999999999862 11 00 01112344577778877755443332222111100 0112223
Q ss_pred HHHHHhcCChhHHHHHHHHHHHccCCCC
Q 008257 177 LLHLISNTGPTIECKLLQVLVGLTSSPT 204 (572)
Q Consensus 177 Lv~lL~~~~~~~q~~a~~aL~~l~~~~~ 204 (572)
++..+....++++..+++.+.|++.++.
T Consensus 275 l~~~~~~~~~~~l~~~lrlllNlTn~n~ 302 (361)
T PF07814_consen 275 LLRQCDDQVIQLLLLALRLLLNLTNNNP 302 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHeeeCCCCCc
Confidence 3333333445567789999999998763
No 176
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=87.35 E-value=5.4 Score=40.50 Aligned_cols=144 Identities=10% Similarity=0.040 Sum_probs=111.4
Q ss_pred CCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-Ccchh-HHHHhh--hH-HH
Q 008257 6 SENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVK-VLVART--VG-SC 80 (572)
Q Consensus 6 s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k-~~i~~~--g~-~~ 80 (572)
.++++..-.+..+|+.....+.--+.+.+...+..+.++...++=++-..|-.++..+-. +...- ..+... .. ..
T Consensus 134 y~~~dial~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~ 213 (335)
T PF08569_consen 134 YENPDIALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQK 213 (335)
T ss_dssp GGSTTTHHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHH
T ss_pred hcCccccchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 456777788889999999888888888889999999999999999998888888887544 33322 233322 33 77
Q ss_pred HHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHH----HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCC
Q 008257 81 LINIMKSGNMQAREAALKALNQISSCEPSAKVLI----HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGH 154 (572)
Q Consensus 81 Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv----~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~ 154 (572)
.-.+|.|++-..++.+++.|+.|-.+..|...|. +..-+..++.+|++. +..+|..|..+.--.+.++.
T Consensus 214 ~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-----sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 214 YNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-----SKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S------HHHHHHHHHHHHHHHH-SS
T ss_pred HHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-----chhhhHHHHHHHHHHHhCCC
Confidence 8899999999999999999999999999965543 556688888999865 37899999999988877643
No 177
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.91 E-value=6.6 Score=42.41 Aligned_cols=121 Identities=11% Similarity=0.141 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCc
Q 008257 329 TPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCA 408 (572)
Q Consensus 329 ~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~ 408 (572)
...+.-|+..+.++-. .-|+.++. ++..+++|..+. +..||..|...|-.++...+.+.
T Consensus 36 ~k~K~Laaq~I~kffk---~FP~l~~~-----Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~~~~v------------ 94 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFK---HFPDLQEE-----AINAQLDLCEDE-DVQIRKQAIKGLPQLCKDNPEHV------------ 94 (556)
T ss_dssp HHHHHHHHHHHHHHHC---C-GGGHHH-----HHHHHHHHHT-S-SHHHHHHHHHHGGGG--T--T-H------------
T ss_pred HHHHHHHHHHHHHHHh---hChhhHHH-----HHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhHHHHH------------
Confidence 3456667777877775 36777665 467789999998 89999999999877765433211
Q ss_pred cccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcC
Q 008257 409 SIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQ 488 (572)
Q Consensus 409 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g 488 (572)
...+..|++||.+.++.....+-.+|..|...++ . +
T Consensus 95 ---------------------------------~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~---k--------~ 130 (556)
T PF05918_consen 95 ---------------------------------SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDP---K--------G 130 (556)
T ss_dssp ---------------------------------HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-H---H--------H
T ss_pred ---------------------------------hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc---H--------H
Confidence 1266789999999888877788888887775433 1 1
Q ss_pred ChHHHHHHHh--hcCCHHHHHHHHHHHH
Q 008257 489 GIKPILDVLL--EKRTENLQRRAVWVVE 514 (572)
Q Consensus 489 ~i~~L~~lL~--~~~~~~~~~~a~~~l~ 514 (572)
.+..+..-+. ..+++.+++++...|.
T Consensus 131 tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 131 TLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 1222333331 1578889999887774
No 178
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=86.39 E-value=37 Score=35.66 Aligned_cols=150 Identities=11% Similarity=0.100 Sum_probs=94.5
Q ss_pred ChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcH---HHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHH
Q 008257 262 QLGSLIRVISENVGISKEQAAAVGLLAELPERDL---GLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSV 338 (572)
Q Consensus 262 ~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~---~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~a 338 (572)
+...+..++...++ +.|.+|+-....+++.++ ..++.+.++=|++-+-.+|.... +... -.+.-.+.-++..
T Consensus 12 a~~~~~~L~~~k~D--~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~-~p~d--cpd~Vy~~i~itv 86 (698)
T KOG2611|consen 12 ALDDCLKLLKGKRD--EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKS-GPGD--CPDDVYLQISITV 86 (698)
T ss_pred chhhHHHHhcccCh--HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCC-CCCC--CcHHHHHHHHHHH
Confidence 34456667777776 788889888888887533 34466889989999999998632 1111 1233445557777
Q ss_pred HHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHH------HHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccc
Q 008257 339 LARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDK------VQMVSATALENLSLESKNLTKLPELPPSGFCASIFP 412 (572)
Q Consensus 339 L~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~------vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~ 412 (572)
|..|+ .+|+....=---+.||.|.+.+..+.+++ +-..+-.+|..++...
T Consensus 87 LacFC----~~pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e-------------------- 142 (698)
T KOG2611|consen 87 LACFC----RVPELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAE-------------------- 142 (698)
T ss_pred HHHHh----CChhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCC--------------------
Confidence 88888 46664322111246899999999763333 4455556666555421
Q ss_pred cccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHH
Q 008257 413 CFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVE 461 (572)
Q Consensus 413 ~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~ 461 (572)
.....++..|+|+.+.++-..++-....
T Consensus 143 ---------------------~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ 170 (698)
T KOG2611|consen 143 ---------------------AGLMTLIASGGLRVIAQMYELPDGSHDM 170 (698)
T ss_pred ---------------------chhHHHHhcCchHHHHHHHhCCCCchhH
Confidence 1223477889999999887665544433
No 179
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=86.36 E-value=2.9 Score=38.69 Aligned_cols=96 Identities=10% Similarity=0.005 Sum_probs=63.8
Q ss_pred cCChHHHHHHhcC------CCHHHHHHHHHHHHHcCCCCChhHHHHHhcc-cCC--hhhHHhhhccCCCChHHHHHHHHH
Q 008257 216 SGATISLVQFVEA------PQNDLRLASIELIQNLSPHMGHELADALRGA-VGQ--LGSLIRVISENVGISKEQAAAVGL 286 (572)
Q Consensus 216 ~g~i~~Lv~lL~~------~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~-~g~--l~~Lv~lL~~~~~~~~~~~~A~~~ 286 (572)
...+..|+.++.. ....--.+.+.+|.|+++.. +.++.+... .+. +..|+.++++.+. .-|.-++++
T Consensus 51 ~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~--~gR~~~l~~~~~~~~l~kLl~ft~~~s~--iRR~Gva~~ 126 (192)
T PF04063_consen 51 GFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP--EGRQFFLDPQRYDGPLQKLLPFTEHKSV--IRRGGVAGT 126 (192)
T ss_pred HHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH--HHHHHHhCchhhhhHHHHHHHHhccCcH--HHHHHHHHH
Confidence 3467788887755 12345667788999999772 333445432 233 7788888888853 567788899
Q ss_pred HhcCCCCcHHHHHHHHhC---CChHHHHHHHhh
Q 008257 287 LAELPERDLGLTRQMLDE---GAFGLIFSRVKS 316 (572)
Q Consensus 287 L~~L~~~~~~~~~~l~~~---g~l~~Lv~lL~~ 316 (572)
|.|++.....+ ..+... +.+|.|+--|..
T Consensus 127 IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLaG 158 (192)
T PF04063_consen 127 IRNCCFDTDSH-EWLLSDDEVDILPYLLLPLAG 158 (192)
T ss_pred HHHhhccHhHH-HHhcCchhhhhHHHHHhhccC
Confidence 99999965555 566553 566666666653
No 180
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.29 E-value=86 Score=37.88 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=44.4
Q ss_pred CcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHh--hhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCc
Q 008257 37 RLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVAR--TVG-SCLINIMKSGNMQAREAALKALNQISSCEPS 109 (572)
Q Consensus 37 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~--~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~ 109 (572)
.||.|.++--+++..+|..|+..=..+..+. |..+.+ ..+ .-|+.-|-+..=.+|+.++-||..|-...++
T Consensus 999 LIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~--k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~ 1072 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKKVQDAMTSIWNALITDS--KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPF 1072 (1702)
T ss_pred hhHHHhhhccCCcHHHHHHHHHHHHHhccCh--HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCCh
Confidence 3566666656777878766654333344432 333332 244 5555555555668999999999999976555
No 181
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=86.11 E-value=5.6 Score=36.49 Aligned_cols=112 Identities=16% Similarity=0.197 Sum_probs=72.2
Q ss_pred chHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhc--------CCHHHHHHHHHHHHH
Q 008257 444 AVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEK--------RTENLQRRAVWVVER 515 (572)
Q Consensus 444 ~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~--------~~~~~~~~a~~~l~~ 515 (572)
....+++.|.+..... ..+.-|........ ..-...+.+.||+..|+++|... .+......++.+|..
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~--~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clka 142 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNP--ISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKA 142 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS---HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCC--chHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHH
Confidence 4556777776654332 33333333332221 11244667889999999988431 223567778899988
Q ss_pred HHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhc
Q 008257 516 ILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHID 559 (572)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~ 559 (572)
|+++......+.........|+..|.+.+..++..|...|+-++
T Consensus 143 l~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 143 LMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 88887767666666566678999999999999999999988764
No 182
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=83.00 E-value=62 Score=33.56 Aligned_cols=171 Identities=12% Similarity=0.172 Sum_probs=104.7
Q ss_pred HHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhc----c-------CC-C----CCCcc--------hhhHHHHHHHH
Q 008257 283 AVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQ----L-------GE-T----RGSRF--------VTPFLEGLLSV 338 (572)
Q Consensus 283 A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~----~-------~~-~----~~~~~--------~~~~~e~a~~a 338 (572)
|+.+|..+....+.....+.+.||+..+++.|+..- . +. . ..... ...++...+..
T Consensus 4 av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~ 83 (379)
T PF06025_consen 4 AVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKF 83 (379)
T ss_pred HHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHH
Confidence 556666666556565678899999999999887521 1 00 0 00001 12233344444
Q ss_pred HHHHhc-cCCCChHHHHHHHH-cCchHHHHHHhccC--CcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccc
Q 008257 339 LARVTF-VLSDEPDAIALCCE-HNLAALFIELLQSN--GLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCF 414 (572)
Q Consensus 339 L~~l~~-~~~~~~~~~~~i~~-~g~i~~Lv~lL~~~--~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (572)
+.++.. .. ...+..+-+.+ ......|...++++ ..+.+-..|+..+..+..+.+.. +
T Consensus 84 l~~~~~~~~-~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~------------------~ 144 (379)
T PF06025_consen 84 LSHAMQHSG-GFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTS------------------F 144 (379)
T ss_pred HHHHhccCC-CcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCch------------------h
Confidence 444443 10 12223333445 55566677777765 24556666777777665543211 0
Q ss_pred cCCCccccccccccCccCccchhhhhhccchHHHHHhhc-C---CCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCCh
Q 008257 415 SKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLD-H---TNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGI 490 (572)
Q Consensus 415 ~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~-~---~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i 490 (572)
-.+.++|.++.+++-+. . ++.++....-.+|+-|+.+. .+.+.+.+.+.+
T Consensus 145 ----------------------~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~----~Gl~~~~~~~~l 198 (379)
T PF06025_consen 145 ----------------------SILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNN----RGLEKVKSSNPL 198 (379)
T ss_pred ----------------------HHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCH----HHHHHHHhcChH
Confidence 02558899998888887 3 45677777777888888763 688999999999
Q ss_pred HHHHHHHh
Q 008257 491 KPILDVLL 498 (572)
Q Consensus 491 ~~L~~lL~ 498 (572)
+.+++++.
T Consensus 199 ~~~f~if~ 206 (379)
T PF06025_consen 199 DKLFEIFT 206 (379)
T ss_pred HHHHHHhC
Confidence 99999983
No 183
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=82.97 E-value=15 Score=39.72 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=78.3
Q ss_pred cCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcC-CCcHHHHHHcCChHHHHH
Q 008257 47 EGPQETKLSLAAFLGDLAL-NSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSC-EPSAKVLIHAGILPPLVK 124 (572)
Q Consensus 47 ~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~-~~~~~~iv~~G~i~~Lv~ 124 (572)
.|+...|..||..+.+... .++. .+..+..+++|+..++..+|..|++.|-.++.+ ++....+ +..|++
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~l----~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~Q 103 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPDL----QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQ 103 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GGG----HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHH
Confidence 4778899999999998766 3332 233458899999999999999999999999986 4555554 457899
Q ss_pred HHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHh---cCChhHHHHHHHHHH
Q 008257 125 DLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS---NTGPTIECKLLQVLV 197 (572)
Q Consensus 125 lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~---~~~~~~q~~a~~aL~ 197 (572)
+|.+.. +.-....-.+|..|-.. -..+.+..++..+. +++..++++++..|.
T Consensus 104 lL~tdd-----~~E~~~v~~sL~~ll~~----------------d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 104 LLQTDD-----PVELDAVKNSLMSLLKQ----------------DPKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HTT--------HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHhccc-----HHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 997631 22233344455545432 22566777777776 677788999888775
No 184
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=82.66 E-value=24 Score=42.19 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=75.5
Q ss_pred CChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHH
Q 008257 261 GQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLA 340 (572)
Q Consensus 261 g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~ 340 (572)
+.+..++..|..+.. .+|..|+.+|+.+...++.+. ....+-..+..-+.+ ....++|.|+..++
T Consensus 816 ~yLk~Il~~l~e~~i--alRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~D----------ssasVREAaldLvG 880 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAI--ALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLND----------SSASVREAALDLVG 880 (1692)
T ss_pred HHHHHHHHHhcCchH--HHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhcc----------chhHHHHHHHHHHh
Confidence 678889999997664 899999999999988776542 222222223333333 24678999999999
Q ss_pred HHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhcccc
Q 008257 341 RVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNL 395 (572)
Q Consensus 341 ~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~ 395 (572)
++.-. +++..... ...+.+=+.++ +.-||+++...++.+....++.
T Consensus 881 rfvl~---~~e~~~qy-----Y~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf 926 (1692)
T KOG1020|consen 881 RFVLS---IPELIFQY-----YDQIIERILDT-GVSVRKRVIKILRDICEETPDF 926 (1692)
T ss_pred hhhhc---cHHHHHHH-----HHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCCh
Confidence 88753 66654433 23344444455 6789999999999998765544
No 185
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=82.56 E-value=2.5 Score=37.84 Aligned_cols=91 Identities=16% Similarity=0.153 Sum_probs=64.0
Q ss_pred HHHHHHHHhhccC-cchH-HHHHHcCCcHHHHHHHc--cCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcc-c
Q 008257 13 EKAEKTLANLEKC-ENNV-RQMAENGRLQPLLTQIL--EGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMK-S 87 (572)
Q Consensus 13 ~~A~~~L~~L~~~-~~n~-~~i~~~g~i~~Lv~~L~--~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~-s 87 (572)
..+..++..|-.. ++-- ..+...|.++.++.+.. ..+...+..++.+|..-+.+...|..|.+.|.+.|-++++ +
T Consensus 61 i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~ 140 (157)
T PF11701_consen 61 IIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNS 140 (157)
T ss_dssp HHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccc
Confidence 3455566665542 2222 33336688888888888 6777788888888876666777788889999999999996 5
Q ss_pred CCHH-HHHHHHHHHHHh
Q 008257 88 GNMQ-AREAALKALNQI 103 (572)
Q Consensus 88 ~~~~-~~~~A~~aL~~L 103 (572)
++.. +|..|+-+|.+|
T Consensus 141 ~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 141 KDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp C-HH-CHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHhcC
Confidence 5555 788888877764
No 186
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.05 E-value=39 Score=37.25 Aligned_cols=172 Identities=16% Similarity=0.144 Sum_probs=105.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHH
Q 008257 3 SSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCL 81 (572)
Q Consensus 3 ~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~L 81 (572)
.+.|.|..++...+.+|..+..+..-+..-+=.+....+..+|.+..+.+|++|.-+|..+--++..- +.-+ ..+
T Consensus 93 g~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de----e~~v~n~l 168 (892)
T KOG2025|consen 93 GTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE----ECPVVNLL 168 (892)
T ss_pred cccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC----cccHHHHH
Confidence 45678888888888888888764444555555667888889999999999999999999887422110 1123 667
Q ss_pred HHhccc-CCHHHHHHHHHHHHHhhcCCCcHHHHHH-----cCChHHHH-------------------HHHhccCCCCCCc
Q 008257 82 INIMKS-GNMQAREAALKALNQISSCEPSAKVLIH-----AGILPPLV-------------------KDLFTVGSNHLPM 136 (572)
Q Consensus 82 v~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~~iv~-----~G~i~~Lv-------------------~lL~s~~~~~~~~ 136 (572)
+.+++. ++++++..|+. +++.++...-.|++ .|++..|+ .+|.-+ -++...
T Consensus 169 ~~liqnDpS~EVRRaaLs---nI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~krv~Llewg-LnDRe~ 244 (892)
T KOG2025|consen 169 KDLIQNDPSDEVRRAALS---NISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKRVLLLEWG-LNDREF 244 (892)
T ss_pred HHHHhcCCcHHHHHHHHH---hhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHh-hhhhhh
Confidence 777765 67788887665 56655554444442 23333333 223221 122234
Q ss_pred chHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhc-CChhHHHHHHHHHHH
Q 008257 137 RLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN-TGPTIECKLLQVLVG 198 (572)
Q Consensus 137 ~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~~~q~~a~~aL~~ 198 (572)
.++..++..|..= |-. ...|-|+-+++-|+- -+.++...++.+|..
T Consensus 245 sVk~A~~d~il~~------Wl~----------~~dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 245 SVKGALVDAILSG------WLR----------FSDGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred HHHHHHHHHHHHH------Hhh----------hccccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 5555555554431 111 124567777777764 445788888888776
No 187
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=81.59 E-value=27 Score=36.18 Aligned_cols=102 Identities=13% Similarity=0.164 Sum_probs=73.3
Q ss_pred CChhhHHhhhccCCCC-hHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHH
Q 008257 261 GQLGSLIRVISENVGI-SKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVL 339 (572)
Q Consensus 261 g~l~~Lv~lL~~~~~~-~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL 339 (572)
..+..|..++++.... ..+-..|+.+++.+...+|..-..+.++|.++.+++.+... + .- ...+++-..-.++
T Consensus 106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~--~-i~---~s~e~l~~lP~~l 179 (379)
T PF06025_consen 106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAK--G-IL---PSSEVLTSLPNVL 179 (379)
T ss_pred hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhcc--C-CC---CcHHHHHHHHHHH
Confidence 3455677777777641 36777888999999888888888999999999999988721 1 11 1233343333444
Q ss_pred HHHhccCCCChHHHHHHHHcCchHHHHHHhccC
Q 008257 340 ARVTFVLSDEPDAIALCCEHNLAALFIELLQSN 372 (572)
Q Consensus 340 ~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~ 372 (572)
.-++ -|..-.+.+.+.+.++.|.+++.++
T Consensus 180 ~Aic----LN~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 180 SAIC----LNNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred hHHh----cCHHHHHHHHhcChHHHHHHHhCCH
Confidence 4445 4788888899999999999999886
No 188
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=80.25 E-value=17 Score=40.12 Aligned_cols=98 Identities=18% Similarity=0.072 Sum_probs=65.7
Q ss_pred CChhhHHhh-hccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHH
Q 008257 261 GQLGSLIRV-ISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVL 339 (572)
Q Consensus 261 g~l~~Lv~l-L~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL 339 (572)
++|..|+.. .+..++ +++.+|+-+|+-....+++. +|..|++|..+ .+.-++-.++-||
T Consensus 554 kair~lLh~aVsD~nD--DVrRaAVialGFVl~~dp~~---------~~s~V~lLses---------~N~HVRyGaA~AL 613 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVND--DVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSES---------YNPHVRYGAAMAL 613 (929)
T ss_pred hhHHHhhcccccccch--HHHHHHHHHheeeEecChhh---------chHHHHHHhhh---------cChhhhhhHHHHH
Confidence 456666666 344454 89999999999888777766 57888899763 3445677788888
Q ss_pred HHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 008257 340 ARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLS 389 (572)
Q Consensus 340 ~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls 389 (572)
.-.+.+ ...+.. |.+|=-+.+++ .+-||+-|..+++-+.
T Consensus 614 GIaCAG----tG~~eA------i~lLepl~~D~-~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 614 GIACAG----TGLKEA------INLLEPLTSDP-VDFVRQGALIALAMIM 652 (929)
T ss_pred hhhhcC----CCcHHH------HHHHhhhhcCh-HHHHHHHHHHHHHHHH
Confidence 876643 333333 23333344566 7889988888887653
No 189
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=80.15 E-value=68 Score=36.43 Aligned_cols=130 Identities=16% Similarity=0.144 Sum_probs=84.4
Q ss_pred hhhhHHHHHHHHhc--------CChhHHHHHHHHHHHccCCCCccHHHHHHHHh--------cCChHHHHHHhcCC----
Q 008257 170 SEDIVHNLLHLISN--------TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKS--------SGATISLVQFVEAP---- 229 (572)
Q Consensus 170 ~~~~i~~Lv~lL~~--------~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~--------~g~i~~Lv~lL~~~---- 229 (572)
..+++..++.+... +..++-..|+.+|+-+...|. ++..+.+ ..||..++.--...
T Consensus 599 kls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~----iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~ 674 (1516)
T KOG1832|consen 599 KLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPD----IQKALAHATLSNNRAYDGIAIILDAANGSNSIV 674 (1516)
T ss_pred HhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecch----HHHHHHHHHhhcccccCceEEEeeccccccccc
Confidence 44566677777652 234566788888888887774 4555443 23666555544322
Q ss_pred CHHHHHHHHHHHHHcCCCCC----------------------------------hhHHHHHhcccCChhhHHhhhccCCC
Q 008257 230 QNDLRLASIELIQNLSPHMG----------------------------------HELADALRGAVGQLGSLIRVISENVG 275 (572)
Q Consensus 230 ~~~v~~~a~~~L~~Ls~~~~----------------------------------~~~~~~i~~~~g~l~~Lv~lL~~~~~ 275 (572)
|++++..|+..+-|+.-..+ +..++.++.. .+|..|+++|....+
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~n-dGIkiLl~Ll~~k~P 753 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGN-DGIKILLKLLQYKNP 753 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcC-ccHHHHHHHHhccCC
Confidence 67899999988877631110 1123345555 789999999987664
Q ss_pred C---hHHHHHHHHHHhcCCCCcHHHHHHHHhCC
Q 008257 276 I---SKEQAAAVGLLAELPERDLGLTRQMLDEG 305 (572)
Q Consensus 276 ~---~~~~~~A~~~L~~L~~~~~~~~~~l~~~g 305 (572)
. ..++.-|..+|.-|+. ++.+++.+.+.-
T Consensus 754 ~t~aD~IRalAc~~L~GLaR-~~tVrQIltKLp 785 (1516)
T KOG1832|consen 754 PTTADCIRALACRVLLGLAR-DDTVRQILTKLP 785 (1516)
T ss_pred CCcHHHHHHHHHHHHhcccc-CcHHHHHHHhCc
Confidence 2 2688899999999998 667777665543
No 190
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=79.96 E-value=17 Score=41.14 Aligned_cols=193 Identities=14% Similarity=0.093 Sum_probs=113.6
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHccCCCCcc------HHH----HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHH
Q 008257 173 IVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTV------LSV----VSAIKSSGATISLVQFVEAPQNDLRLASIELIQ 242 (572)
Q Consensus 173 ~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~------~~~----~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~ 242 (572)
.-..|+++|++ |++-..++.++.-+.++...- .+. |+.+ -...+|.|++.....+...+-+=..+|+
T Consensus 816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRf-F~~ivP~l~~~~~t~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRF-FCDIVPILVSKFETAPGSQKHNYLEALS 892 (1030)
T ss_pred HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHH-HHhhHHHHHHHhccCCccchhHHHHHHH
Confidence 45566777654 566666777666655543210 011 1111 2467888998888555567777788888
Q ss_pred HcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCC
Q 008257 243 NLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGET 322 (572)
Q Consensus 243 ~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~ 322 (572)
++-.+-+.++ .+..-+..+|.|++.|+-++. ..|..+..+|.-+......... -.-.-.+|.++.+=++..
T Consensus 893 hVl~~vP~~v--llp~~~~LlPLLLq~Ls~~D~--~v~vstl~~i~~~l~~~~tL~t-~~~~Tlvp~lLsls~~~~---- 963 (1030)
T KOG1967|consen 893 HVLTNVPKQV--LLPQFPMLLPLLLQALSMPDV--IVRVSTLRTIPMLLTESETLQT-EHLSTLVPYLLSLSSDND---- 963 (1030)
T ss_pred HHHhcCCHHh--hccchhhHHHHHHHhcCCCcc--chhhhHhhhhhHHHHhccccch-HHHhHHHHHHHhcCCCCC----
Confidence 8776655443 222222568889999998885 7777777777665443322221 111234566666644321
Q ss_pred CCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHH
Q 008257 323 RGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATA 384 (572)
Q Consensus 323 ~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~a 384 (572)
.....+++.|+..|..++.. -|...-.-..-.++..|...|.++ .-.||++|+.+
T Consensus 964 ---n~~~~VR~~ALqcL~aL~~~---~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~t 1018 (1030)
T KOG1967|consen 964 ---NNMMVVREDALQCLNALTRR---LPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDT 1018 (1030)
T ss_pred ---cchhHHHHHHHHHHHHHhcc---CCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHH
Confidence 11255678888777777752 122111112234566778888888 77888888876
No 191
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=79.76 E-value=8.5 Score=29.41 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhh
Q 008257 460 VEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEV 526 (572)
Q Consensus 460 ~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 526 (572)
..+|++|++++...+ .+...+.+.+.++.++++...++.-.+|--+..+|.-+..+.+....+
T Consensus 4 lKaaLWaighIgss~----~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L 66 (73)
T PF14668_consen 4 LKAALWAIGHIGSSP----LGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEIL 66 (73)
T ss_pred HHHHHHHHHhHhcCh----HHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHH
Confidence 568999999998753 567778788999999999976777889988999998888776555443
No 192
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=79.35 E-value=67 Score=35.76 Aligned_cols=203 Identities=13% Similarity=0.091 Sum_probs=104.6
Q ss_pred ChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhc----CChhHHHHHH
Q 008257 118 ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN----TGPTIECKLL 193 (572)
Q Consensus 118 ~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~----~~~~~q~~a~ 193 (572)
++..+.+++.+. ..-...|+..|..+...... -....+..+..|+++ ..+.++..|+
T Consensus 396 av~~i~~~I~~~------~~~~~ea~~~l~~l~~~~~~-------------Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~ 456 (618)
T PF01347_consen 396 AVKFIKDLIKSK------KLTDDEAAQLLASLPFHVRR-------------PTEELLKELFELAKSPKVKNSPYLRETAL 456 (618)
T ss_dssp HHHHHHHHHHTT-------S-HHHHHHHHHHHHHT------------------HHHHHHHHHHHT-HHHHT-HHHHHHHH
T ss_pred HHHHHHHHHHcC------CCCHHHHHHHHHHHHhhcCC-------------CCHHHHHHHHHHHhCccccCChhHHHHHH
Confidence 466666777653 22245677888887654211 234567777788764 3456666666
Q ss_pred HHHHHc----cCCCCccH--HHHHHHHhcCChHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCCh
Q 008257 194 QVLVGL----TSSPTTVL--SVVSAIKSSGATISLVQFVE----APQNDLRLASIELIQNLSPHMGHELADALRGAVGQL 263 (572)
Q Consensus 194 ~aL~~l----~~~~~~~~--~~~~~i~~~g~i~~Lv~lL~----~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l 263 (572)
-++..+ |......+ .....-.....++.|...|. .++.+.+..++++|+|+... ..+
T Consensus 457 L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-------------~~i 523 (618)
T PF01347_consen 457 LSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-------------ESI 523 (618)
T ss_dssp HHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-------------GGH
T ss_pred HHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-------------hhh
Confidence 665554 33310000 00001112345666666665 34557788889999988522 235
Q ss_pred hhHHhhhccC-CCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHH
Q 008257 264 GSLIRVISEN-VGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARV 342 (572)
Q Consensus 264 ~~Lv~lL~~~-~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l 342 (572)
+.|..++... .....+|..|++++..+....++..+ +.|..+..+.. ...+++-.|..+|.+.
T Consensus 524 ~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~--------~~l~~I~~n~~--------e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 524 PVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVR--------EILLPIFMNTT--------EDPEVRIAAYLILMRC 587 (618)
T ss_dssp HHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHH--------HHHHHHHH-TT--------S-HHHHHHHHHHHHHT
T ss_pred HHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHH--------HHHHHHhcCCC--------CChhHHHHHHHHHHhc
Confidence 6666666555 21248999999999988665554332 55666776522 3455666666555542
Q ss_pred hccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHH
Q 008257 343 TFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVS 381 (572)
Q Consensus 343 ~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~A 381 (572)
+|... .+..+...|....+..|....
T Consensus 588 ------~P~~~-------~l~~i~~~l~~E~~~QV~sfv 613 (618)
T PF01347_consen 588 ------NPSPS-------VLQRIAQSLWNEPSNQVASFV 613 (618)
T ss_dssp ---------HH-------HHHHHHHHHTT-S-HHHHHHH
T ss_pred ------CCCHH-------HHHHHHHHHhhCchHHHHHHH
Confidence 34321 234455666654355555433
No 193
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=79.28 E-value=76 Score=32.20 Aligned_cols=172 Identities=13% Similarity=0.159 Sum_probs=110.6
Q ss_pred ChhhHHhhhccCCCChHHHHHHHHHHhcCCC-CcHHHHHHHHhC-C-ChHHHHHHHhhhccCCCC----CCcchhhHHHH
Q 008257 262 QLGSLIRVISENVGISKEQAAAVGLLAELPE-RDLGLTRQMLDE-G-AFGLIFSRVKSIQLGETR----GSRFVTPFLEG 334 (572)
Q Consensus 262 ~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~-~~~~~~~~l~~~-g-~l~~Lv~lL~~~~~~~~~----~~~~~~~~~e~ 334 (572)
-++.+.+.|.+... ....+++.+|..++. .+....+.+.+. + -.+.+..++...+..... .... ..++.+
T Consensus 57 ~~k~lyr~L~~~~~--~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~-~siR~~ 133 (330)
T PF11707_consen 57 HLKLLYRSLSSSKP--SLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSK-PSIRTN 133 (330)
T ss_pred HHHHHHHHhCcCcH--HHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccC-cCHHHH
Confidence 37778888888775 777799999999988 666666666654 2 345666676543211100 0011 367777
Q ss_pred HHHHHHHHhccCCCChHHHHHHH-HcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcccccc
Q 008257 335 LLSVLARVTFVLSDEPDAIALCC-EHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPC 413 (572)
Q Consensus 335 a~~aL~~l~~~~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~ 413 (572)
.+.-+..+-.. .++..++.+. +.+.+..+.+-|... ++++-.....+|..-........+.
T Consensus 134 fI~F~Lsfl~~--~~~~~~~~lL~~~~~~~~l~k~l~~D-~~~~v~~iL~~l~~~Vl~~~~v~r~--------------- 195 (330)
T PF11707_consen 134 FIRFWLSFLSS--GDPELKRDLLSQKKLMSALFKGLRKD-PPETVILILETLKDKVLKDSSVSRS--------------- 195 (330)
T ss_pred HHHHHHHHHcc--CCHHHHHHHHHcCchHHHHHhcccCC-CHHHHHHHHHHHHHHhccCCCCChh---------------
Confidence 77766666544 4787777655 455677777777776 7777777777776433322222110
Q ss_pred ccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCH----hHHHHHHHHHHHhhhcCc
Q 008257 414 FSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNE----KVVEASLAALSTVIDDGV 475 (572)
Q Consensus 414 ~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~----~v~~~A~~aL~~l~~~~~ 475 (572)
....+.....+..|+.+.+..++ .+.+.|-..|..++.++.
T Consensus 196 ---------------------~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 196 ---------------------TKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred ---------------------hhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence 11123456688899998888777 888888888888887654
No 194
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=79.02 E-value=19 Score=37.66 Aligned_cols=136 Identities=11% Similarity=0.110 Sum_probs=91.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCC-----H--HHHHHHHHHHHHcCCC
Q 008257 175 HNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ-----N--DLRLASIELIQNLSPH 247 (572)
Q Consensus 175 ~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~--~v~~~a~~~L~~Ls~~ 247 (572)
..+..++...+++-|..++-..-.++++.+-....++.+-++-|.+.+=+||..++ + ..+.-++.+|.++++.
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 34555655556666666666666677665433456777889999999999997543 2 3567778889998876
Q ss_pred CChhHHHHHhcccCChhhHHhhhccCCCChH------HHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHh
Q 008257 248 MGHELADALRGAVGQLGSLIRVISENVGISK------EQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVK 315 (572)
Q Consensus 248 ~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~------~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~ 315 (572)
..-..-+.+. ..||.|.++++...+ ++ .-..+-.+|...+..++.. +.++..|+++.+-+.-.
T Consensus 94 pElAsh~~~v---~~IP~llev~~~~~d-~d~e~~~~m~~d~Y~cL~~Va~~e~G~-~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 94 PELASHEEMV---SRIPLLLEVMSKGID-TDYEDNLIMLEDCYECLYLVATAEAGL-MTLIASGGLRVIAQMYE 162 (698)
T ss_pred hhhccCHHHH---HhhhHHHHHHHhcCC-CchhhhHHHHHHHHHHHHHHhcCCchh-HHHHhcCchHHHHHHHh
Confidence 2111112344 368999999987654 22 3456666777777765555 78899999999986654
No 195
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=78.48 E-value=14 Score=28.20 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHH
Q 008257 279 EQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCE 358 (572)
Q Consensus 279 ~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~ 358 (572)
....|+++++++...+... +.+-+.+.++.++++-.... .-.++--+.-+|.-++ .+.+-.+.+.+
T Consensus 3 ~lKaaLWaighIgss~~G~-~lL~~~~iv~~iv~~a~~s~---------v~siRGT~fy~Lglis----~T~~G~~~L~~ 68 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGI-QLLDESDIVEDIVKIAENSP---------VLSIRGTCFYVLGLIS----STEEGAEILDE 68 (73)
T ss_pred HHHHHHHHHHhHhcChHHH-HHHhhcCHHHHHHHHHHhCC---------ccchHHHHHHHHHHHh----CCHHHHHHHHH
Confidence 3567899999998855555 66677899999999987632 3455666788888887 46777777666
Q ss_pred cC
Q 008257 359 HN 360 (572)
Q Consensus 359 ~g 360 (572)
.|
T Consensus 69 ~g 70 (73)
T PF14668_consen 69 LG 70 (73)
T ss_pred cC
Confidence 65
No 196
>PRK14707 hypothetical protein; Provisional
Probab=78.44 E-value=2e+02 Score=36.46 Aligned_cols=464 Identities=13% Similarity=0.116 Sum_probs=211.2
Q ss_pred CCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHcc--CCHHHHHHHHHHHHH-hccCcchhHHHHhhhHHHHH
Q 008257 6 SENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILE--GPQETKLSLAAFLGD-LALNSDVKVLVARTVGSCLI 82 (572)
Q Consensus 6 s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~--~~~~~~~~aa~~L~~-l~~~~~~k~~i~~~g~~~Lv 82 (572)
.++..+...+...-..++..+.-+..+ ..-+|..++.-++. +++.- ..|+..|.. ++.++.-+..+...|+-..+
T Consensus 176 ~~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c-~~aa~~la~~l~~~~~l~~~~~~q~va~~l 253 (2710)
T PRK14707 176 SDNPDCQAVAPRFAALVASDDRLRSAM-DAQGVATVLNALCKWPDTPDC-GNAVSALAERLADESRLRNELKPQELGNAL 253 (2710)
T ss_pred CCCchHHHHHHHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHcCcHHHHHhCChHHHHHHH
Confidence 345555555555555555555444444 33334444444443 22333 345555554 45555555666666774555
Q ss_pred Hhcc-cCCH-HHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccc
Q 008257 83 NIMK-SGNM-QAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSIT 160 (572)
Q Consensus 83 ~lL~-s~~~-~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~ 160 (572)
+-|+ -.+. .+...+...-..|+.+..-++. .+.-.|.-.++-|+.- .+ ....+..|..+-..|+. +....+
T Consensus 254 N~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~a-l~~q~vanalNalSKw-pd--~~vc~~Aa~~la~rl~~-d~~l~~-- 326 (2710)
T PRK14707 254 NALSKWADTPVCAAAASALAERLVDDPGLRKA-LDPINVTQALNALSKW-AD--LPVCAEAAIALAERLAD-DPELCK-- 326 (2710)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhhhHHHHHh-cCHHHHHHHHhhhhcC-CC--chHHHHHHHHHHHHHhc-cHhhhh--
Confidence 5444 4444 4444444444455533333333 3333444445555432 11 12223333333334443 211100
Q ss_pred cCCCccccchhhhHHHHHHHHhc--CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHh-cCCCHHHHHHH
Q 008257 161 VGPDNQTLVSEDIVHNLLHLISN--TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFV-EAPQNDLRLAS 237 (572)
Q Consensus 161 ~~~~~~~l~~~~~i~~Lv~lL~~--~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a 237 (572)
. ...-.+...+.-|+- +...+...+...-..++.++ +.+..+ +..|+...+.-| +-++..+-..|
T Consensus 327 ------~-~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~----~l~~~l-~~q~~a~~lNalsKWp~~~~c~~a 394 (2710)
T PRK14707 327 ------A-LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADP----ELRKDL-EPQGVSSVLNALSKWPDTPVCAAA 394 (2710)
T ss_pred ------c-cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCH----hhhccc-chhHHHHHHhhhhcCCCchHHHHH
Confidence 0 111123334444432 33344444444444555554 234433 234454444443 44565555555
Q ss_pred HHHHHH-cCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhh
Q 008257 238 IELIQN-LSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS 316 (572)
Q Consensus 238 ~~~L~~-Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~ 316 (572)
+..|.. +..+ .+..+.+.. .++..++.-|++=.+ ...-..|+..|..-..++.+.++.+- .-.|...++-|+.
T Consensus 395 a~~LA~~l~~d--~~l~~~~~~--Q~van~lnalsKWPd-~~~C~~aa~~lA~~la~d~~l~~~~~-p~~va~~LnalSK 468 (2710)
T PRK14707 395 ASALAEHVVDD--LELRKGLDP--QGVSNALNALAKWPD-LPICGQAVSALAGRLAHDTELCKALD-PINVTQALDALSK 468 (2710)
T ss_pred HHHHHHHhccC--hhhhhhcch--hhHHHHHHHhhcCCc-chhHHHHHHHHHHHHhccHHHHhhcC-hHHHHHHHHHhhc
Confidence 555543 3322 344445544 356666666654332 14444444544443344777765443 2224444444432
Q ss_pred hccCCCCCCcchhhHHHHHHHHHH-HHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhcccc
Q 008257 317 IQLGETRGSRFVTPFLEGLLSVLA-RVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNL 395 (572)
Q Consensus 317 ~~~~~~~~~~~~~~~~e~a~~aL~-~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~ 395 (572)
.+ +.++...++.+|. +++ .+++.++.+--.++...|=.|=+-+ +... +..|+..++..-..-
T Consensus 469 ------WP---d~p~c~~aa~~La~~l~----~~~~l~~a~~~q~~~~~L~aLSK~P-d~~~---c~~A~~~lA~rl~~~ 531 (2710)
T PRK14707 469 ------WP---DTPICGQTASALAARLA----HERRLRKALKPQEVVIALHSLSKWP-DTPI---CAEAASALAERVVDE 531 (2710)
T ss_pred ------CC---CChhHHHHHHHHHHHhc----ccHHHHhhcCHHHHHHHHHHhhcCC-CcHH---HHHHHHHHHHHhccc
Confidence 11 1222333444444 555 5777777665555555554444444 4332 233333333221100
Q ss_pred CCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhh-cCCCHhHHHHHHHHHHHhhhcC
Q 008257 396 TKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALL-DHTNEKVVEASLAALSTVIDDG 474 (572)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL-~~~~~~v~~~A~~aL~~l~~~~ 474 (572)
.+ +-+ ....--+.-+++-| +.++.+..+.|...|..+..+.
T Consensus 532 ~~------------l~~--------------------------~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~ 573 (2710)
T PRK14707 532 LQ------------LRK--------------------------AFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADE 573 (2710)
T ss_pred hh------------hhh--------------------------hhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcc
Confidence 00 000 00111222333333 3456667777777777776554
Q ss_pred ccchhhHHHHHhcCChHHHHHHHhhcCCHHH-HHHHHHHHHHHHcchhhhhhhcCCCCchHHHHHHh-hcCCchhHHHHH
Q 008257 475 VDIEQGVMVLCEAQGIKPILDVLLEKRTENL-QRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAF-QHADYRTRQIAE 552 (572)
Q Consensus 475 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~-~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll-~~~~~~~~~~Aa 552 (572)
. ....-....+|..++.-|...++... ++.+.++-..+...++.+..+.. .++. .++.-| +.++....+.|+
T Consensus 574 ~----~~~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~~~~lr~~l~~-q~la-n~lNALSKWP~s~~C~~Aa 647 (2710)
T PRK14707 574 P----QLPKDLHRQGVVIVLNALSKWPDTAVCAEAVNALAERLVDEPDLRKELDP-VDVT-NVLNALSKWPGTEVCAEVA 647 (2710)
T ss_pred h----hhHHhhhhhHHHHHHHhhccCCCcHHHHHHHHHHHHHhccChhhhhhccH-HHHH-HHHhhhhcCCCchHHHHHH
Confidence 2 22334456778888888866776554 44444444445455555544443 2332 333333 345555666666
Q ss_pred HHHHh
Q 008257 553 RALKH 557 (572)
Q Consensus 553 ~aL~~ 557 (572)
..|+.
T Consensus 648 ~rLA~ 652 (2710)
T PRK14707 648 RLLAG 652 (2710)
T ss_pred HHHHH
Confidence 66543
No 197
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=78.36 E-value=1.3e+02 Score=34.35 Aligned_cols=224 Identities=12% Similarity=0.135 Sum_probs=119.5
Q ss_pred cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccC
Q 008257 183 NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE-APQNDLRLASIELIQNLSPHMGHELADALRGAVG 261 (572)
Q Consensus 183 ~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g 261 (572)
+..|..--++.+++...++....+...-. ..+...+..+. +..+.++..|++++..-++. .+-..+.. +
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~-----~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~---~vl~~~~p--~ 530 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ-----HFLNATVNALTMDVPPPVKISAVRAFCGYCKV---KVLLSLQP--M 530 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH-----HHHHHHHHhhccCCCCchhHHHHHHHHhccCc---eeccccch--H
Confidence 34555555666666655443111011111 12233344443 33456788888877766632 21111222 5
Q ss_pred ChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHH
Q 008257 262 QLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLAR 341 (572)
Q Consensus 262 ~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~ 341 (572)
.+..|+.+....++ ++-..-+-+|+..++.|++.. .-.++-..|-++.+......+ +......+.....|+.
T Consensus 531 ild~L~qlas~~s~--evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~D-----P~V~~~~qd~f~el~q 602 (1005)
T KOG2274|consen 531 ILDGLLQLASKSSD--EVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSED-----PQVASLAQDLFEELLQ 602 (1005)
T ss_pred HHHHHHHHcccccH--HHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCC-----chHHHHHHHHHHHHHH
Confidence 67778887766554 666666667777777788874 456677778888776532111 1122333334444443
Q ss_pred HhccCCCChHHHHHHHHcCchHHHHHHhccCCc----HHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCC
Q 008257 342 VTFVLSDEPDAIALCCEHNLAALFIELLQSNGL----DKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQ 417 (572)
Q Consensus 342 l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (572)
... +-+ - ...-.||.|+..|..+ . .....-|+..|..+.+++++ |.++
T Consensus 603 ~~~----~~g---~-m~e~~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~-------pL~~------------ 654 (1005)
T KOG2274|consen 603 IAA----NYG---P-MQERLIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPS-------PLPN------------ 654 (1005)
T ss_pred HHH----hhc---c-hHHHHHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCC-------CccH------------
Confidence 331 111 1 1224689999999986 3 33333444444444443321 1110
Q ss_pred CccccccccccCccCccchhhhhhccchHHHHHhh-cCCCHhHHHHHHHHHHHhhhc
Q 008257 418 PVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALL-DHTNEKVVEASLAALSTVIDD 473 (572)
Q Consensus 418 ~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL-~~~~~~v~~~A~~aL~~l~~~ 473 (572)
..-..+.||+.++. ++.+.++...+-.+|..+...
T Consensus 655 ---------------------~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 655 ---------------------LLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred ---------------------HHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 11233667777765 667778888888888887754
No 198
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=77.96 E-value=77 Score=31.52 Aligned_cols=229 Identities=9% Similarity=0.085 Sum_probs=137.0
Q ss_pred HHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhh-hH-HHH-HHhccc-C-CHHHHHHHHHHHHHh
Q 008257 30 RQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVART-VG-SCL-INIMKS-G-NMQAREAALKALNQI 103 (572)
Q Consensus 30 ~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~-g~-~~L-v~lL~s-~-~~~~~~~A~~aL~~L 103 (572)
.++.++|.+..|++.|....-+.+..++-.-.++-. .-+.|....+. .. |-+ ..+++. . .++.--.+-..|+.-
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLREC 152 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 345678999999999999888888877766555433 22333332222 22 333 333333 2 245555555666665
Q ss_pred hcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhc
Q 008257 104 SSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN 183 (572)
Q Consensus 104 s~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~ 183 (572)
..++.-.+.+.+..-....-.....+. -++-..|..+...+............+.+- ..-....--.++.+
T Consensus 153 irhe~LakiiL~s~~~~~FF~~vq~p~-----FdiasdA~~tfK~llt~Hk~~vaEfl~~n~----d~ff~e~~~~Ll~s 223 (342)
T KOG1566|consen 153 IRHEFLAKIILESTNFEKFFLYVQLPN-----FDIASDAFSTFKELLTRHKSVVAEFLIRNY----DNFFAEVYEKLLRS 223 (342)
T ss_pred HhhHHHHHHHHcchhHHHHHHHHhccc-----hHHHHHHHHHHHHHHHHhHHHHHHHHHhCh----hhhHHHHHHHHhcc
Confidence 555555666666666666666665432 355566666666654322110000000000 00012234567788
Q ss_pred CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCC--CChhHHHHHhcccC
Q 008257 184 TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH--MGHELADALRGAVG 261 (572)
Q Consensus 184 ~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~--~~~~~~~~i~~~~g 261 (572)
++.-.+.++++.|..+-.++++.....+-|.+...+..+..+|+.+...+|-.|.-..+..... .+..+..-+...
T Consensus 224 ~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~N-- 301 (342)
T KOG1566|consen 224 ENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRN-- 301 (342)
T ss_pred cceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhC--
Confidence 8888899999999998877666444555566667899999999999988999998888777643 344555555443
Q ss_pred ChhhHHhhh
Q 008257 262 QLGSLIRVI 270 (572)
Q Consensus 262 ~l~~Lv~lL 270 (572)
=+.|++++
T Consensus 302 -r~KLl~~l 309 (342)
T KOG1566|consen 302 -RPKLLELL 309 (342)
T ss_pred -cHHHHHHH
Confidence 14455554
No 199
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=77.25 E-value=20 Score=32.26 Aligned_cols=110 Identities=16% Similarity=0.241 Sum_probs=72.3
Q ss_pred chHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCC--hHHHHHHHhhcCCHHHHHHHHHHHHHHHcc--
Q 008257 444 AVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQG--IKPILDVLLEKRTENLQRRAVWVVERILRT-- 519 (572)
Q Consensus 444 ~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~--i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~-- 519 (572)
-+..+..+|++++++-+-.++..+.-.+..+ +.+.+.++++ +..++.+|+...+...++.+..++..|+..
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~-----~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQC-----SWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4567889999999888888888888777542 1334434433 234778886455577889999999988843
Q ss_pred --hhhhhhhcCC--CCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257 520 --DDIAYEVSGD--PNVSTALVDAFQHADYRTRQIAERALKHIDK 560 (572)
Q Consensus 520 --~~~~~~~~~~--~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~ 560 (572)
++..+++... .++.+.+++++++ ......+..+|..|-.
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 5555555432 2233556666665 5666777777777654
No 200
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=76.27 E-value=14 Score=34.73 Aligned_cols=103 Identities=19% Similarity=0.180 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhh
Q 008257 93 REAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSED 172 (572)
Q Consensus 93 ~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~ 172 (572)
..+|+..|.-++++++.+...+++-.---|-..|...+++....-+|-.+..+++.|.+++... ++ ..+....
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~--vi-----~fLltTe 189 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQY--VI-----KFLLTTE 189 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHH--HH-----HHHHhhh
Confidence 4789999999999999998888887655555555433333445678888999999999865311 11 3566788
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHccCC
Q 008257 173 IVHNLLHLISNTGPTIECKLLQVLVGLTSS 202 (572)
Q Consensus 173 ~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~ 202 (572)
+||.+++.+..++.--|.-++..+..+-.+
T Consensus 190 ivPLcLrIme~gSElSktvaifI~qkil~d 219 (315)
T COG5209 190 IVPLCLRIMELGSELSKTVAIFIFQKILGD 219 (315)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 999999999888777777777666554443
No 201
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=75.99 E-value=13 Score=40.78 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=49.8
Q ss_pred hccchHHHHHh-hcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257 441 EGHAVEKLIAL-LDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL 517 (572)
Q Consensus 441 ~~g~i~~Lv~l-L~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~ 517 (572)
..++|..|+.. .+..|++|+.+|..||+.++..++ ...+..+++|.++-++.+|-.++.+|.-.|
T Consensus 552 nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp------------~~~~s~V~lLses~N~HVRyGaA~ALGIaC 617 (929)
T KOG2062|consen 552 NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP------------EQLPSTVSLLSESYNPHVRYGAAMALGIAC 617 (929)
T ss_pred chhhHHHhhcccccccchHHHHHHHHHheeeEecCh------------hhchHHHHHHhhhcChhhhhhHHHHHhhhh
Confidence 34577777776 567899999999999998876543 124667788888889999988988887555
No 202
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.94 E-value=32 Score=40.11 Aligned_cols=128 Identities=16% Similarity=0.203 Sum_probs=91.7
Q ss_pred hhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCC
Q 008257 328 VTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFC 407 (572)
Q Consensus 328 ~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~ 407 (572)
++.++..|.-+|+++.+- +.+. -+. -+|.|+..+...+++.+|.++..|++.|+-.=+++..
T Consensus 936 dp~Lq~AAtLaL~klM~i---Sa~f----ces-~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie---------- 997 (1251)
T KOG0414|consen 936 DPELQAAATLALGKLMCI---SAEF----CES-HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIE---------- 997 (1251)
T ss_pred CHHHHHHHHHHHHHHhhh---hHHH----HHH-HHHHHHHHHhcCCCceeeecchheccchhhhcccccc----------
Confidence 577888888888888653 3332 222 3599999999433999999999999888754332211
Q ss_pred ccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhc
Q 008257 408 ASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEA 487 (572)
Q Consensus 408 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~ 487 (572)
---+.|-.-|+..++.|+..|+..|.+|...+ +|.=-
T Consensus 998 -----------------------------------~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--------miKVK 1034 (1251)
T KOG0414|consen 998 -----------------------------------PWTEHLYRRLRDESPSVRKTALLVLSHLILND--------MIKVK 1034 (1251)
T ss_pred -----------------------------------hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh--------hhHhc
Confidence 12346778889999999999999999998643 34445
Q ss_pred CChHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257 488 QGIKPILDVLLEKRTENLQRRAVWVVERIL 517 (572)
Q Consensus 488 g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~ 517 (572)
|-+.-+..+| ..+++.++.-|-..+..+.
T Consensus 1035 Gql~eMA~cl-~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 1035 GQLSEMALCL-EDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred ccHHHHHHHh-cCCcHHHHHHHHHHHHHhh
Confidence 7777788888 6999999888875544443
No 203
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=74.36 E-value=8.1 Score=31.04 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChh
Q 008257 174 VHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHE 251 (572)
Q Consensus 174 i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~ 251 (572)
....+..|.++.+.+|.+++..|..+...... ..+...+.+..+...|+++++-+=-+|++.|..|+...+++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~-----~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSE-----PVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCc-----chhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 44556667778889999999999998876541 11112456778888999999999999999999998665544
No 204
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=73.10 E-value=31 Score=38.94 Aligned_cols=200 Identities=15% Similarity=0.182 Sum_probs=114.1
Q ss_pred HHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHH
Q 008257 286 LLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALF 365 (572)
Q Consensus 286 ~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L 365 (572)
+|++.+..+++..+.+++.|++..+..+++.- +..+++-.+++.+.+++... ...+.......... ..+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f---------~~~~~~~~il~~l~n~~~~~-~~~~~~~~~~~~~~-~~f 562 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF---------DNEELHRKILGLLGNLAEVL-ELRELLMIFEFIDF-SVF 562 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc---------cchhHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHH-HHH
Confidence 78888888999999999999999999999863 24566778888888887431 01111111111111 233
Q ss_pred HHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccch
Q 008257 366 IELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAV 445 (572)
Q Consensus 366 v~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i 445 (572)
-.++....+.+.-..|+..|+.+..++.......-.+.. ...++.++. ..... .....-..-+
T Consensus 563 ~~~~~~w~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~--~~~l~e~i~----------~~~~~-----~~~~~~~~~f 625 (699)
T KOG3665|consen 563 KVLLNKWDSIERSYNAASILALLLSDSEKTTECVFRNSV--NELLVEAIS----------RWLTS-----EIRVINDRSF 625 (699)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHhCCCcCccccchHHH--HHHHHHHhh----------ccCcc-----ceeehhhhhc
Confidence 335555523377788888898887765431110000000 000111111 00000 0001112233
Q ss_pred HH-HHHhhc-CCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 008257 446 EK-LIALLD-HTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERI 516 (572)
Q Consensus 446 ~~-Lv~lL~-~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l 516 (572)
.| +-+++. +..++.+.-|+.++.+++.... +..+.+.+.|+++.+..+-.......+++.+...+...
T Consensus 626 ~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 626 FPRILRILRLSKSDGSQLWALWTIKNVLEQNK---EYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred chhHHHHhcccCCCchHHHHHHHHHHHHHcCh---hhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 44 555554 4677889999999999997644 46778899999988765543222444555555555443
No 205
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.92 E-value=67 Score=37.58 Aligned_cols=224 Identities=15% Similarity=0.187 Sum_probs=119.6
Q ss_pred ccCCHHHHHHHHHHHHHhccCcchhHHHHh--hhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHH
Q 008257 46 LEGPQETKLSLAAFLGDLALNSDVKVLVAR--TVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPL 122 (572)
Q Consensus 46 ~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~--~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~L 122 (572)
++.+..+|.++=..|..+...+........ ..+ ..|.+-.++.....|..++.+|..|-...++. ..+.+|.+
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e----~~~~i~k~ 739 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAE----HCDLIPKL 739 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHH----HHHHHHHH
Confidence 344677788887888776655333333322 134 56666666666667777777777766533321 12233333
Q ss_pred HH--HHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcC--ChhHHHHH--HHHH
Q 008257 123 VK--DLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNT--GPTIECKL--LQVL 196 (572)
Q Consensus 123 v~--lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~~q~~a--~~aL 196 (572)
+. +|... +.+...++.|..+|..|..... ..+.+... .+..|..++..+..+ .......+ +-++
T Consensus 740 I~EvIL~~K---e~n~~aR~~Af~lL~~i~~i~~-----~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai 809 (1176)
T KOG1248|consen 740 IPEVILSLK---EVNVKARRNAFALLVFIGAIQS-----SLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAI 809 (1176)
T ss_pred HHHHHHhcc---cccHHHHhhHHHHHHHHHHHHh-----hhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHH
Confidence 32 22222 2347789999999999983111 11111001 233677777777643 22222211 2222
Q ss_pred HHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCC
Q 008257 197 VGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGI 276 (572)
Q Consensus 197 ~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~ 276 (572)
..+.....+ .-....-.+.+..+..+|.++.++++..|+..+..+....+..+.....+ -.++.+..++...+.
T Consensus 810 ~~il~e~~~---~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~--~LL~sll~ls~d~k~- 883 (1176)
T KOG1248|consen 810 THILQEFKN---ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLE--ELLPSLLALSHDHKI- 883 (1176)
T ss_pred HHHHHHHhc---cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHH--HHHHHHHHHHHhhhH-
Confidence 222211100 00000012345556667788899999999999999987766654333333 256777776555453
Q ss_pred hHHHHHHHHHHhcC
Q 008257 277 SKEQAAAVGLLAEL 290 (572)
Q Consensus 277 ~~~~~~A~~~L~~L 290 (572)
.++...-..+..|
T Consensus 884 -~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 884 -KVRKKVRLLLEKL 896 (1176)
T ss_pred -HHHHHHHHHHHHH
Confidence 6666555555544
No 206
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=72.84 E-value=89 Score=34.46 Aligned_cols=209 Identities=13% Similarity=0.101 Sum_probs=107.4
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCCc----HHHHHHcCC---hHHHHHHHhccCCCCCCcchHHHHHHHHHHHHh
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEPS----AKVLIHAGI---LPPLVKDLFTVGSNHLPMRLKEVSATILANVVN 151 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~----~~~iv~~G~---i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~ 151 (572)
-.||++|+.-+.+.-+....-+.. .. ... .+.+..+|- +..+.+.+.+.. . --..|+.++..+..
T Consensus 314 ~~lv~~lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~---~---~~~ea~~~~~~~~~ 385 (574)
T smart00638 314 LRLVRLLRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKK---I---TPLEAAQLLAVLPH 385 (574)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC---C---CHHHHHHHHHHHHH
Confidence 667888887665544444443333 11 111 344444454 555555565531 1 12345555555543
Q ss_pred cCCCCCccccCCCccccchhhhHHHHHHHHhcC----ChhHHHHHHHHHHHccC----CCCccHHHHHHHHhcCChHHHH
Q 008257 152 SGHDFDSITVGPDNQTLVSEDIVHNLLHLISNT----GPTIECKLLQVLVGLTS----SPTTVLSVVSAIKSSGATISLV 223 (572)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~----~~~~q~~a~~aL~~l~~----~~~~~~~~~~~i~~~g~i~~Lv 223 (572)
.-.. -....+..+..++.++ .+.++..++-++..+.. .... ....+ -...++.|.
T Consensus 386 ~~~~-------------Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~---~~~~~-~~~~~~~l~ 448 (574)
T smart00638 386 TARY-------------PTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPS---CPDFV-LEELLKYLH 448 (574)
T ss_pred hhhc-------------CCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCC---CChhh-HHHHHHHHH
Confidence 2110 1245788888888753 44566666666665543 2211 00011 123556666
Q ss_pred HHhc----CCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhc-cCCCChHHHHHHHHHHhcCCCCcHHHH
Q 008257 224 QFVE----APQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVIS-ENVGISKEQAAAVGLLAELPERDLGLT 298 (572)
Q Consensus 224 ~lL~----~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~-~~~~~~~~~~~A~~~L~~L~~~~~~~~ 298 (572)
..|. ..+.+.+...+++|.|+.... .++.|..++. .......+|..|+++|..++...+...
T Consensus 449 ~~l~~~~~~~~~~~~~~~LkaLGN~g~~~-------------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v 515 (574)
T smart00638 449 ELLQQAVSKGDEEEIQLYLKALGNAGHPS-------------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV 515 (574)
T ss_pred HHHHHHHhcCCchheeeHHHhhhccCChh-------------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH
Confidence 6554 234555667788888775331 2333444443 222124799999999998765333332
Q ss_pred HHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHH
Q 008257 299 RQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLAR 341 (572)
Q Consensus 299 ~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~ 341 (572)
+ +.|+.+..+.. ...+++-.|.-+|..
T Consensus 516 ~--------~~l~~i~~n~~--------e~~EvRiaA~~~lm~ 542 (574)
T smart00638 516 Q--------EVLLPIYLNRA--------EPPEVRMAAVLVLME 542 (574)
T ss_pred H--------HHHHHHHcCCC--------CChHHHHHHHHHHHh
Confidence 2 44556665521 345556555555544
No 207
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=72.57 E-value=9.3 Score=35.77 Aligned_cols=104 Identities=12% Similarity=0.114 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHH
Q 008257 279 EQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCE 358 (572)
Q Consensus 279 ~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~ 358 (572)
--..|+.+|..+++ .++.+..++++..--.|..+|....+. +..+-++-.++|.+..+... ++++..+.+..
T Consensus 116 RvcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~-----~~fEyLRltsLGVIgaLvkN--dsq~vi~fLlt 187 (315)
T COG5209 116 RVCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSN-----SKFEYLRLTSLGVIGALVKN--DSQYVIKFLLT 187 (315)
T ss_pred HHHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccC-----CccceeeehHHHHHHHHHhC--CCHHHHHHHHh
Confidence 44567777777776 778877888876544444555432111 11233344577777777766 78899999999
Q ss_pred cCchHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 008257 359 HNLAALFIELLQSNGLDKVQMVSATALENLSLE 391 (572)
Q Consensus 359 ~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~ 391 (572)
..++|...+.+..+ ++..|..|+..+..+..+
T Consensus 188 TeivPLcLrIme~g-SElSktvaifI~qkil~d 219 (315)
T COG5209 188 TEIVPLCLRIMELG-SELSKTVAIFIFQKILGD 219 (315)
T ss_pred hhHHHHHHHHHHhh-hHHHHHHHHHHHHHHhcc
Confidence 99999999999998 888888888877766543
No 208
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=72.55 E-value=61 Score=31.08 Aligned_cols=146 Identities=16% Similarity=0.107 Sum_probs=81.4
Q ss_pred HHHHH-HhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHH
Q 008257 220 ISLVQ-FVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLT 298 (572)
Q Consensus 220 ~~Lv~-lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~ 298 (572)
+.|+. +-+..+++.+...+.+|..++.+.+ ..... .+..|..+...+.. +.+..+.+.+..+.+.++..-
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~------v~~~L~~L~~~~~~--~~~~~~~rLl~~lw~~~~r~f 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKN-VCVPP------VLQTLVSLVEQGSL--ELRYVALRLLTLLWKANDRHF 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCc-cchhH------HHHHHHHHHcCCch--hHHHHHHHHHHHHHHhCchHH
Confidence 33444 4456678999999999999998753 32112 34566666666663 556667777777765443331
Q ss_pred HHHHhCCChHHHHHHHhhh-ccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHh-ccCCcHH
Q 008257 299 RQMLDEGAFGLIFSRVKSI-QLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELL-QSNGLDK 376 (572)
Q Consensus 299 ~~l~~~g~l~~Lv~lL~~~-~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~ 376 (572)
+.+..++..+.-. +....... ..-+..-..+..+..++.. +|+ .-...++.+..+| ... ++.
T Consensus 74 ------~~L~~~L~~~~~r~~~~~~~~~-~~~~~~i~~a~s~~~ic~~---~p~-----~g~~ll~~ls~~L~~~~-~~~ 137 (234)
T PF12530_consen 74 ------PFLQPLLLLLILRIPSSFSSKD-EFWECLISIAASIRDICCS---RPD-----HGVDLLPLLSGCLNQSC-DEV 137 (234)
T ss_pred ------HHHHHHHHHHHhhcccccCCCc-chHHHHHHHHHHHHHHHHh---Chh-----hHHHHHHHHHHHHhccc-cHH
Confidence 2333333331110 00000011 1111122223455555542 565 2334678888999 565 788
Q ss_pred HHHHHHHHHHHhhh
Q 008257 377 VQMVSATALENLSL 390 (572)
Q Consensus 377 vk~~Aa~aL~~ls~ 390 (572)
++..+..+|..+..
T Consensus 138 ~~alale~l~~Lc~ 151 (234)
T PF12530_consen 138 AQALALEALAPLCE 151 (234)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888763
No 209
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.19 E-value=99 Score=35.55 Aligned_cols=274 Identities=16% Similarity=0.205 Sum_probs=139.4
Q ss_pred HHHHHhcc------c--CCHHHHHHHHHHHHHhhc----CCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHH
Q 008257 79 SCLINIMK------S--GNMQAREAALKALNQISS----CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATIL 146 (572)
Q Consensus 79 ~~Lv~lL~------s--~~~~~~~~A~~aL~~Ls~----~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L 146 (572)
+.+++.|. + .++..+..|+.++.+|+. .... +-..+.=.++.....++++ ..-+|.+|+|++
T Consensus 413 ~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~-~~~mE~flv~hVfP~f~s~-----~g~Lrarac~vl 486 (1010)
T KOG1991|consen 413 SFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPY-KSQMEYFLVNHVFPEFQSP-----YGYLRARACWVL 486 (1010)
T ss_pred HHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCch-HHHHHHHHHHHhhHhhcCc-----hhHHHHHHHHHH
Confidence 66677776 2 356778899999999984 2222 2334444556666666654 367899999999
Q ss_pred HHHHhcCCCCCccccCCCccccchhhhHHHHHHHHh-cCChhHHHHHHHHHHHccCCCCcc-HHHHHHHHhcCChHHHHH
Q 008257 147 ANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS-NTGPTIECKLLQVLVGLTSSPTTV-LSVVSAIKSSGATISLVQ 224 (572)
Q Consensus 147 ~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~-~~~~~~q~~a~~aL~~l~~~~~~~-~~~~~~i~~~g~i~~Lv~ 224 (572)
...+.-+ +.. .-.-..+.....+.|. +....++..|+-||..+-.+.... +.++..+ .+.+..|+.
T Consensus 487 ~~~~~~d--f~d--------~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hv--p~~mq~lL~ 554 (1010)
T KOG1991|consen 487 SQFSSID--FKD--------PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHV--PPIMQELLK 554 (1010)
T ss_pred HHHHhcc--CCC--------hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhh--hHHHHHHHH
Confidence 9998532 111 0112335555666666 667789999999999887664321 1233222 134445555
Q ss_pred HhcCCCHHHHHHHHH-HHHHcCCCCChhHHHHHhcccCChhhHHhhhcc----CCCChHHHHHHHHHHhcCCC------C
Q 008257 225 FVEAPQNDLRLASIE-LIQNLSPHMGHELADALRGAVGQLGSLIRVISE----NVGISKEQAAAVGLLAELPE------R 293 (572)
Q Consensus 225 lL~~~~~~v~~~a~~-~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~----~~~~~~~~~~A~~~L~~L~~------~ 293 (572)
+.+.-+.+.....+. .+...+..- ...+..++. ......++++.. .+...+-..+|.|+|..+.. .
T Consensus 555 L~ne~End~Lt~vme~iV~~fseEl-sPfA~eL~q--~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~ 631 (1010)
T KOG1991|consen 555 LSNEVENDDLTNVMEKIVCKFSEEL-SPFAVELCQ--NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLEN 631 (1010)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHhh-chhHHHHHH--HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 655444333333322 223332221 112223333 234556667763 11112556677777765432 1
Q ss_pred cHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCC
Q 008257 294 DLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNG 373 (572)
Q Consensus 294 ~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 373 (572)
.++..+. .+.-.+|.+-..|++. ...+-+.+......++.. .+++.- .-=|..|.+.+.+...
T Consensus 632 ~p~vl~~-le~~~l~vi~~iL~~~----------i~dfyeE~~ei~~~~t~~---~~~Isp--~mW~ll~li~e~~~~~- 694 (1010)
T KOG1991|consen 632 HPEVLKQ-LEPIVLPVIGFILKND----------ITDFYEELLEIVSSLTFL---SKEISP--IMWGLLELILEVFQDD- 694 (1010)
T ss_pred cHHHHHH-HHHHHHHHHHHHHHHh----------hHHHHHHHHHHHhhhhhh---hcccCH--HHHHHHHHHHHHHhhh-
Confidence 2222111 1223444444555541 233444455554444432 111110 0113455666666655
Q ss_pred cHHHHHHHHHHHHHhhh
Q 008257 374 LDKVQMVSATALENLSL 390 (572)
Q Consensus 374 ~~~vk~~Aa~aL~~ls~ 390 (572)
...--....-+|.|+..
T Consensus 695 ~~dyf~d~~~~l~N~vt 711 (1010)
T KOG1991|consen 695 GIDYFTDMMPALHNYVT 711 (1010)
T ss_pred hHHHHHHHHHHHhhhee
Confidence 34444455566666544
No 210
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.94 E-value=13 Score=39.66 Aligned_cols=66 Identities=18% Similarity=0.182 Sum_probs=40.4
Q ss_pred hccchHHHHHhhc-CCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257 441 EGHAVEKLIALLD-HTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL 517 (572)
Q Consensus 441 ~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~ 517 (572)
+...++..|++|. +.|.-|+...+-||+..+....+ + . ++..|-.++ ...+.-++..|..++.-|.
T Consensus 583 D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~--~---~-----a~diL~~L~-~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 583 DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD--K---V-----ATDILEALM-YDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc--H---H-----HHHHHHHHh-hCcHHHHHHHHHHHHHHHH
Confidence 4456777788884 56788888888888877754321 1 1 233343445 4566666666666665554
No 211
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=70.74 E-value=15 Score=40.12 Aligned_cols=109 Identities=22% Similarity=0.164 Sum_probs=72.2
Q ss_pred hHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccc-----hhhhHHHHHHHHhcCChhHHHHHH
Q 008257 119 LPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLV-----SEDIVHNLLHLISNTGPTIECKLL 193 (572)
Q Consensus 119 i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~-----~~~~i~~Lv~lL~~~~~~~q~~a~ 193 (572)
...++.+|.+. +..+|..-.++++|++.+-. ++++.+. -...+..|++-+....|.++.+|+
T Consensus 301 ~~~~~~LLdse-----s~tlRc~~~EicaN~V~~~~--------~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKal 367 (1128)
T COG5098 301 YEHFDELLDSE-----SFTLRCCFLEICANLVEHFK--------KDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKAL 367 (1128)
T ss_pred HHHHHHHhccc-----chhHHHHHHHHHHHHHHHHh--------cchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 45667888764 37899999999999986421 1111111 122334444444568899999999
Q ss_pred HHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 008257 194 QVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLS 245 (572)
Q Consensus 194 ~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls 245 (572)
..+..++..+.- .+++ .+..+...+.-|...+.-||++|.++++.|-
T Consensus 368 qv~~kifdl~sk--~~~~---r~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 368 QVLEKIFDLNSK--TVGR---RHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred HHHHHHHhCccc--ccch---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 998888775432 1111 2445666677788888889999999988774
No 212
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=70.27 E-value=11 Score=35.78 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhccCcchhHHHHhhh-------H-HHHHHhccc-CCHHHHHHHHHHHHHhhcCCCc-HHHH-HHcCC
Q 008257 50 QETKLSLAAFLGDLALNSDVKVLVARTV-------G-SCLINIMKS-GNMQAREAALKALNQISSCEPS-AKVL-IHAGI 118 (572)
Q Consensus 50 ~~~~~~aa~~L~~l~~~~~~k~~i~~~g-------~-~~Lv~lL~s-~~~~~~~~A~~aL~~Ls~~~~~-~~~i-v~~G~ 118 (572)
..-|..|.++|.+|+..+.|-..|...+ . ..|+++|.. +++..++.|+-.|.+|+..++. ...+ .+.+.
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 4458899999999988776655543221 2 667777764 7788899999999999987665 3344 38999
Q ss_pred hHHHHHHHhcc
Q 008257 119 LPPLVKDLFTV 129 (572)
Q Consensus 119 i~~Lv~lL~s~ 129 (572)
|..|+.++...
T Consensus 218 i~~Li~FiE~a 228 (257)
T PF12031_consen 218 ISHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999999753
No 213
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=70.20 E-value=1e+02 Score=35.27 Aligned_cols=189 Identities=17% Similarity=0.162 Sum_probs=113.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhccCcchhHHHH-hhhH-HHHHHhcc-cCCHHHHHHHHHHHHHhhcCCCcHHHHHHcC
Q 008257 41 LLTQILEGPQETKLSLAAFLGDLALNSDVKVLVA-RTVG-SCLINIMK-SGNMQAREAALKALNQISSCEPSAKVLIHAG 117 (572)
Q Consensus 41 Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~-~~g~-~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G 117 (572)
+-..+.+.....|.+|+..+.....+.. +.... ..|. ..++.... ..+..+...|+.+|.-|+..-..-..=.-.+
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~ 336 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKN 336 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHh
Confidence 3445556777777888877766544333 11111 1233 44444333 3556677888888888886322211222456
Q ss_pred ChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHH
Q 008257 118 ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLV 197 (572)
Q Consensus 118 ~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~ 197 (572)
..|.+..-+.... ..+++.+..++-.++... .....++..+..++...|.++..+...+.
T Consensus 337 v~p~lld~lkekk-----~~l~d~l~~~~d~~~ns~---------------~l~~~~~~I~e~lk~knp~~k~~~~~~l~ 396 (815)
T KOG1820|consen 337 VFPSLLDRLKEKK-----SELRDALLKALDAILNST---------------PLSKMSEAILEALKGKNPQIKGECLLLLD 396 (815)
T ss_pred hcchHHHHhhhcc-----HHHHHHHHHHHHHHHhcc---------------cHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 7888888886542 566666666665554421 12446788889999999999888766555
Q ss_pred HccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhH
Q 008257 198 GLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHEL 252 (572)
Q Consensus 198 ~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~ 252 (572)
..-........-+.. -.+.+|.++....+.+.+||..|..++..+-+..+.+.
T Consensus 397 r~~~~~~~~~~~~~t--~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~ 449 (815)
T KOG1820|consen 397 RKLRKLGPKTVEKET--VKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEV 449 (815)
T ss_pred HHHhhcCCcCcchhh--HHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence 443322110011111 13467788888888889999999999887766545443
No 214
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=70.06 E-value=19 Score=38.45 Aligned_cols=65 Identities=17% Similarity=0.144 Sum_probs=48.9
Q ss_pred hccchHHHHHh-hcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257 441 EGHAVEKLIAL-LDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL 517 (572)
Q Consensus 441 ~~g~i~~Lv~l-L~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~ 517 (572)
..|+|..|+.. .+..|++|+.+|+.||+-.+.++. +.++..+++|.++.+..++-..+.+|.-.|
T Consensus 549 n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------------~~lv~tvelLs~shN~hVR~g~AvaLGiac 614 (926)
T COG5116 549 NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------------DLLVGTVELLSESHNFHVRAGVAVALGIAC 614 (926)
T ss_pred cchhHhhhheeecccCchHHHHHHHHheeeeEecCc------------chhhHHHHHhhhccchhhhhhhHHHhhhhh
Confidence 45677778777 678899999999999998887653 345667788876777888777777765444
No 215
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.61 E-value=57 Score=36.85 Aligned_cols=185 Identities=12% Similarity=0.106 Sum_probs=108.5
Q ss_pred HHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHH
Q 008257 43 TQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPP 121 (572)
Q Consensus 43 ~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~ 121 (572)
..+.+....+|-.+...|.++....+-+..+...++ ...+++|+.+++-+--+|++.+..|+.- .....+|-
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~d 806 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPD 806 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHH
Confidence 344444455566666667766664444556667788 9999999999998888888877777743 23456788
Q ss_pred HHH-HHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHcc
Q 008257 122 LVK-DLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLT 200 (572)
Q Consensus 122 Lv~-lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~ 200 (572)
|.+ +.+... ...++.+-..-+++.+++..-++. .. =..+-.+..+++..++++.+.+..++..|..+|
T Consensus 807 L~e~Y~s~k~--k~~~d~~lkVGEai~k~~qa~Gel---~~------~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lc 875 (982)
T KOG4653|consen 807 LSEEYLSEKK--KLQTDYRLKVGEAILKVAQALGEL---VF------KYKAVLINTFLSGVREPDHEFRASSLANLGQLC 875 (982)
T ss_pred HHHHHHhccc--CCCccceehHHHHHHHHHHHhccH---HH------HHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHH
Confidence 887 554432 121344445557788776532110 00 011235566667777676677888888888777
Q ss_pred CCCCccHHHHHHHHhcCChHHHHHHhcCC-CHHHHHHHHHHHHHcCCCCC
Q 008257 201 SSPTTVLSVVSAIKSSGATISLVQFVEAP-QNDLRLASIELIQNLSPHMG 249 (572)
Q Consensus 201 ~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~~L~~Ls~~~~ 249 (572)
.-... .+...+. ..+..++.+...+ ..-+|+.|+-++..+-.+.+
T Consensus 876 q~~a~--~vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 876 QLLAF--QVSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred HHHhh--hhhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccc
Confidence 54221 1111211 1333444444433 35677777777776655544
No 216
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=69.19 E-value=1.9e+02 Score=32.18 Aligned_cols=100 Identities=16% Similarity=0.111 Sum_probs=70.4
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS 158 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~ 158 (572)
..|++-..+.+..++...+..|..|+.+...+..-+-.+....|..-|... -+.+|.+|.-+|..+-..+.+.
T Consensus 88 ~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr-----ep~VRiqAv~aLsrlQ~d~~de-- 160 (892)
T KOG2025|consen 88 YHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR-----EPNVRIQAVLALSRLQGDPKDE-- 160 (892)
T ss_pred HHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc-----CchHHHHHHHHHHHHhcCCCCC--
Confidence 778888888899999999999999997544444445455555555444432 2789999999999996433221
Q ss_pred cccCCCccccchhhhHHHHHHHHhc-CChhHHHHHHHHH
Q 008257 159 ITVGPDNQTLVSEDIVHNLLHLISN-TGPTIECKLLQVL 196 (572)
Q Consensus 159 ~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~~~q~~a~~aL 196 (572)
.-.++..++.++++ ++++++..++..+
T Consensus 161 -----------e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 161 -----------ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred -----------cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 12467778888875 7889998776443
No 217
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=68.90 E-value=19 Score=31.58 Aligned_cols=74 Identities=11% Similarity=0.213 Sum_probs=61.9
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHcCC
Q 008257 171 EDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA-PQNDLRLASIELIQNLSP 246 (572)
Q Consensus 171 ~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~Ls~ 246 (572)
..++..|.+-|.+.++.+|..|+..|-.+..+.. ..++..|.....+..|+.++.. .++.|+...+.++...+.
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG--~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCG--KRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC--HHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 4577778888888899999999999998888765 3678888888999999999988 568899999988887763
No 218
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=68.50 E-value=1.4e+02 Score=30.28 Aligned_cols=164 Identities=14% Similarity=0.104 Sum_probs=111.1
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhcCCC--cHHHHH-HcC-ChHHHHHHHhccCCCCCC--------cchHHHHHHH
Q 008257 78 GSCLINIMKSGNMQAREAALKALNQISSCEP--SAKVLI-HAG-ILPPLVKDLFTVGSNHLP--------MRLKEVSATI 145 (572)
Q Consensus 78 ~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~--~~~~iv-~~G-~i~~Lv~lL~s~~~~~~~--------~~~~~~aa~~ 145 (572)
.+.+.+.|++.....+..+++.|..+...+. ..+.+. .-. -.+.|.+++......... +++|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 5788889999888888999999999998433 345555 323 355677777432200011 2777777776
Q ss_pred HHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHH-ccCCCCccHHHHHHHHhcCChHHHHH
Q 008257 146 LANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVG-LTSSPTTVLSVVSAIKSSGATISLVQ 224 (572)
Q Consensus 146 L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~-l~~~~~~~~~~~~~i~~~g~i~~Lv~ 224 (572)
+..+....+..- ....+...+.+..+++-|..+++++-...+.+|.. +..++.-....+..+-....+..|+.
T Consensus 138 ~Lsfl~~~~~~~------~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~ 211 (330)
T PF11707_consen 138 WLSFLSSGDPEL------KRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLAS 211 (330)
T ss_pred HHHHHccCCHHH------HHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHH
Confidence 666655432110 11345666778889999988888999999988883 54444322345555666678889999
Q ss_pred HhcCCCH----HHHHHHHHHHHHcCCC
Q 008257 225 FVEAPQN----DLRLASIELIQNLSPH 247 (572)
Q Consensus 225 lL~~~~~----~v~~~a~~~L~~Ls~~ 247 (572)
+....++ .+.+.+-..|..++.+
T Consensus 212 Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 212 LYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred HhcccCCcccchHHHHHHHHHHHHhcC
Confidence 8877777 7888888888888743
No 219
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=68.46 E-value=53 Score=29.56 Aligned_cols=108 Identities=11% Similarity=0.086 Sum_probs=65.7
Q ss_pred CcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhh---HHHHHHhcccCC-HHHHHHHHHHHHHhhcC----CC
Q 008257 37 RLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTV---GSCLINIMKSGN-MQAREAALKALNQISSC----EP 108 (572)
Q Consensus 37 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g---~~~Lv~lL~s~~-~~~~~~A~~aL~~Ls~~----~~ 108 (572)
++..+.++|++.+.+.|..++..+........ ...+.+.| ...|+..|+..+ +.+.+.|+.+|..|... ++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45567778888887777655555554444322 34443332 278899998744 46678888888887742 33
Q ss_pred cHHHHH---HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhc
Q 008257 109 SAKVLI---HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNS 152 (572)
Q Consensus 109 ~~~~iv---~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~ 152 (572)
..+++. -.+.++.++++++. ....+.+..+|..+-..
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~-------~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD-------SSCPETALDALATLLPH 144 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHH
Confidence 344443 23445555555542 34567778888877653
No 220
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=68.43 E-value=23 Score=31.08 Aligned_cols=73 Identities=12% Similarity=0.110 Sum_probs=57.4
Q ss_pred cchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257 443 HAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL 517 (572)
Q Consensus 443 g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~ 517 (572)
.++..|.+-|.++++.++..|+..|-.++.+-.. .....|.+.+-+..|+.++....++.++++++.++....
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~--~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGT--HFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCH--HHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 3788899999999999999999999999987321 223456666667778888855677889999999888775
No 221
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=68.24 E-value=27 Score=30.17 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=60.0
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC---CHHHHHHHHHHHHHcCC
Q 008257 171 EDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP---QNDLRLASIELIQNLSP 246 (572)
Q Consensus 171 ~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~v~~~a~~~L~~Ls~ 246 (572)
..++..|-+-|+++++.+|..|+..|-.+..+.. ..++..+.....+..|+.++..+ ++.|+..++.++...+.
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg--~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCG--KPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC--hHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4578888888888999999999999998888764 25777777778888899999753 57899999988887763
No 222
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.66 E-value=2.4e+02 Score=32.66 Aligned_cols=119 Identities=11% Similarity=0.041 Sum_probs=72.9
Q ss_pred hhhHHHHHHHHh------c--CChhHHHHHHHHHHHccCC-CCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHH
Q 008257 171 EDIVHNLLHLIS------N--TGPTIECKLLQVLVGLTSS-PTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELI 241 (572)
Q Consensus 171 ~~~i~~Lv~lL~------~--~~~~~q~~a~~aL~~l~~~-~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L 241 (572)
.+.++-+++.|. . .++.-+..|++++.++++. ... ...+ -+.|.=.++.+.+.++++---+|..|+|.+
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~-s~~~-~~mE~flv~hVfP~f~s~~g~Lrarac~vl 486 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKK-SPYK-SQMEYFLVNHVFPEFQSPYGYLRARACWVL 486 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccC-CchH-HHHHHHHHHHhhHhhcCchhHHHHHHHHHH
Confidence 456666777776 1 3445667888888888752 111 0111 122333466677778888888999999999
Q ss_pred HHcCCCC-ChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHH
Q 008257 242 QNLSPHM-GHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGL 297 (572)
Q Consensus 242 ~~Ls~~~-~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~ 297 (572)
+.++.-+ .... .+. .++..-...|.++++. .++..|+-+|..+..+....
T Consensus 487 ~~~~~~df~d~~--~l~---~ale~t~~~l~~d~~l-PV~VeAalALq~fI~~~~~~ 537 (1010)
T KOG1991|consen 487 SQFSSIDFKDPN--NLS---EALELTHNCLLNDNEL-PVRVEAALALQSFISNQEQA 537 (1010)
T ss_pred HHHHhccCCChH--HHH---HHHHHHHHHhccCCcC-chhhHHHHHHHHHHhcchhh
Confidence 9999421 1111 122 2566667777755543 67888888887776644433
No 223
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=67.08 E-value=25 Score=34.36 Aligned_cols=110 Identities=22% Similarity=0.189 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHHHhhccCcchHHHHHHcC--CcHHHHHHHccC----CHHHHHHHHHHHHHhcc-CcchhH-HHHhhh
Q 008257 6 SENLLTVEKAEKTLANLEKCENNVRQMAENG--RLQPLLTQILEG----PQETKLSLAAFLGDLAL-NSDVKV-LVARTV 77 (572)
Q Consensus 6 s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g--~i~~Lv~~L~~~----~~~~~~~aa~~L~~l~~-~~~~k~-~i~~~g 77 (572)
+..+..+..+.++++|+..++..+..+.+.. .+-..+..+..+ +..+|..+|..+.|++. ....+. .-.+..
T Consensus 121 ~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ 200 (268)
T PF08324_consen 121 SSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE 200 (268)
T ss_dssp TSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred CCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 4566778889999999999988888877553 344455544444 56788888999999865 111111 000111
Q ss_pred H-HHHHHhccc--CCHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 008257 78 G-SCLINIMKS--GNMQAREAALKALNQISSCEPSAKVLIH 115 (572)
Q Consensus 78 ~-~~Lv~lL~s--~~~~~~~~A~~aL~~Ls~~~~~~~~iv~ 115 (572)
. ..+++.+.. .++|..-.++-||++|...++....+.+
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~ 241 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAK 241 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCC
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHH
Confidence 2 455553332 6889999999999999977766655554
No 224
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=66.87 E-value=12 Score=35.66 Aligned_cols=80 Identities=20% Similarity=0.162 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhhccCcchHHHHHHcCCcH-------HHHHHHcc-CCHHHHHHHHHHHHHhccCc-chhHHHHh-hhH-
Q 008257 10 LTVEKAEKTLANLEKCENNVRQMAENGRLQ-------PLLTQILE-GPQETKLSLAAFLGDLALNS-DVKVLVAR-TVG- 78 (572)
Q Consensus 10 ~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~-------~Lv~~L~~-~~~~~~~~aa~~L~~l~~~~-~~k~~i~~-~g~- 78 (572)
.-++-|.++|++|+..|.|++.+...+-.. .|+++|.. +++..|..|...|.+++..+ ...+.++. .+.
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 578999999999999999999988776533 33444443 45667788888899999844 44455554 466
Q ss_pred HHHHHhcccCC
Q 008257 79 SCLINIMKSGN 89 (572)
Q Consensus 79 ~~Lv~lL~s~~ 89 (572)
..||.++....
T Consensus 219 ~~Li~FiE~a~ 229 (257)
T PF12031_consen 219 SHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999987543
No 225
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=65.45 E-value=26 Score=30.62 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcC------CCHHHHHHHHHHHHHc
Q 008257 171 EDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA------PQNDLRLASIELIQNL 244 (572)
Q Consensus 171 ~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~------~~~~v~~~a~~~L~~L 244 (572)
..++..+.+-|.+.++.+|..|+..|-.+..+.. ..++..|...+.+.-|++++.. .+..|+...+.++..-
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG--~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCG--ERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSW 114 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC--HHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 4567778888888999999999999988887764 3678888888899999999953 3468888888887665
Q ss_pred C
Q 008257 245 S 245 (572)
Q Consensus 245 s 245 (572)
+
T Consensus 115 ~ 115 (139)
T cd03567 115 T 115 (139)
T ss_pred H
Confidence 5
No 226
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=65.31 E-value=31 Score=37.89 Aligned_cols=121 Identities=15% Similarity=0.101 Sum_probs=80.3
Q ss_pred hHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc----cchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcch
Q 008257 445 VEKLIALLDHTNEKVVEASLAALSTVIDDGV----DIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTD 520 (572)
Q Consensus 445 i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~----~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~ 520 (572)
...++.||++.+--.+...+.+.+|++.+-. ......+.+.. -+..+++-| ....+..+.+|...+.+||..+
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~--Lv~ll~ERl-~D~~py~RtKalqv~~kifdl~ 377 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLND--LVGLLVERL-SDTYPYTRTKALQVLEKIFDLN 377 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHH--HHHHHHHHh-hccchHHHHHHHHHHHHHHhCc
Confidence 4578999999998888888888888885421 00000111111 123445555 2677999999999999999542
Q ss_pred hhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcccCCCCCCCCC
Q 008257 521 DIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIPNFSGIFPN 570 (572)
Q Consensus 521 ~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~s~~~~~ 570 (572)
. .-.+....+.+.-++-+++.+..||++|-+.+..|-.-+-.++.+-+
T Consensus 378 s--k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~~~h~~ 425 (1128)
T COG5098 378 S--KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFASEHGS 425 (1128)
T ss_pred c--cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChhhhccc
Confidence 1 11122223334567788999999999999999888777766666544
No 227
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=64.65 E-value=23 Score=28.49 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=58.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcC
Q 008257 39 QPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAG 117 (572)
Q Consensus 39 ~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G 117 (572)
+..+..|.++.+.+|..+...|.++..... ...+...++ ..+...|+.+++-+=-+|+++|..|+...+..
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~------- 77 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE------- 77 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH-------
Confidence 445667778888899999999999876443 222223456 88899999999999999999999999754432
Q ss_pred ChHHHHHHH
Q 008257 118 ILPPLVKDL 126 (572)
Q Consensus 118 ~i~~Lv~lL 126 (572)
.+|.|++..
T Consensus 78 vl~~L~~~y 86 (92)
T PF10363_consen 78 VLPILLDEY 86 (92)
T ss_pred HHHHHHHHH
Confidence 456666544
No 228
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=63.45 E-value=29 Score=30.38 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=60.1
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHcC
Q 008257 171 EDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA-PQNDLRLASIELIQNLS 245 (572)
Q Consensus 171 ~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~Ls 245 (572)
..++..|.+-|.+.++.+|..|+..|-.+..+.. ..+...+.+.+-+..|+.++.. .++.|+..++.++..-+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG--~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCG--THFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCC--HHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 5677888888888999999999999888887754 3677888888999999999974 45789999988887766
No 229
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=63.44 E-value=95 Score=28.47 Aligned_cols=113 Identities=16% Similarity=0.190 Sum_probs=66.3
Q ss_pred chHHHHHh-hcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhc----CCh---------------HHHHHHHhhcCCH
Q 008257 444 AVEKLIAL-LDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEA----QGI---------------KPILDVLLEKRTE 503 (572)
Q Consensus 444 ~i~~Lv~l-L~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~----g~i---------------~~L~~lL~~~~~~ 503 (572)
.-++|+.+ +.+++++++.+|+.+|..|....- .....-.+. +.+ ..|+..|+...+.
T Consensus 40 ~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk---~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~ 116 (182)
T PF13251_consen 40 ATPSLLTCILKDPSPKVRAAAASALAALLEGSK---PFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSP 116 (182)
T ss_pred CCcchhHHHHcCCchhHHHHHHHHHHHHHHccH---HHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 33444444 478899999999999999985421 111111111 111 2455566434455
Q ss_pred HHHHHHHHHHHHHHcc-h--hhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhccc
Q 008257 504 NLQRRAVWVVERILRT-D--DIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKI 561 (572)
Q Consensus 504 ~~~~~a~~~l~~l~~~-~--~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~ 561 (572)
........++..+... + .....+.. .+...+-.++.+.|+.++..+..++..|...
T Consensus 117 ~~l~q~lK~la~Lv~~tPY~rL~~~ll~--~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 117 PVLTQLLKCLAVLVQATPYHRLPPGLLT--EVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHHHccCChhhcCHhHHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 6666677777777754 2 22222222 2233555677889999998888888777653
No 230
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=61.60 E-value=1.7e+02 Score=33.10 Aligned_cols=195 Identities=12% Similarity=0.110 Sum_probs=109.2
Q ss_pred HHHHhcc-CcchhHHHHhhhH-HHHHHhccc-CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCCh--HHHHHHHhccCCCC
Q 008257 59 FLGDLAL-NSDVKVLVARTVG-SCLINIMKS-GNMQAREAALKALNQISSCEPSAKVLIHAGIL--PPLVKDLFTVGSNH 133 (572)
Q Consensus 59 ~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i--~~Lv~lL~s~~~~~ 133 (572)
+|++... +.++.+.+.+.|+ ..+.+.++. ++.+.+..+++.+.+++...+++......--+ ..+-.++..-
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w---- 569 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKW---- 569 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc----
Confidence 6777766 5566677777766 999999986 56678999999999999876554332211111 1222334332
Q ss_pred CCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHH
Q 008257 134 LPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAI 213 (572)
Q Consensus 134 ~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i 213 (572)
...+.-..|+.+|+.+..+++++.. .-. .+.+.+....+.......... .+
T Consensus 570 ~~~ersY~~~siLa~ll~~~~~~~~--------~~~---------------r~~~~~~l~e~i~~~~~~~~~------~~ 620 (699)
T KOG3665|consen 570 DSIERSYNAASILALLLSDSEKTTE--------CVF---------------RNSVNELLVEAISRWLTSEIR------VI 620 (699)
T ss_pred chhhHHHHHHHHHHHHHhCCCcCcc--------ccc---------------hHHHHHHHHHHhhccCcccee------eh
Confidence 1236678899999999886543110 000 122222222333322222110 11
Q ss_pred HhcCChHH-HHHHhcC-CCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcC
Q 008257 214 KSSGATIS-LVQFVEA-PQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAEL 290 (572)
Q Consensus 214 ~~~g~i~~-Lv~lL~~-~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L 290 (572)
. ..-+.+ +..++.. ..+..+..|++++.++....+. ..+.+.+. |+++.+...-.... ....+..+...+.++
T Consensus 621 ~-~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 621 N-DRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKE-YCKLVRES-NGFELIENIRVLSE-VVDVKEEAVLVIESC 695 (699)
T ss_pred h-hhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChh-hhhhhHhc-cchhhhhhcchhHH-HHHHHHHHHHHhhcc
Confidence 1 111222 3344443 3467889999999999866444 33456665 77777666544333 345666665555443
No 231
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=60.97 E-value=34 Score=30.02 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=56.5
Q ss_pred CcHHHHHHHccCCHHHHHHHHHHHHHhccCc--chhHHHHhhhH-HHHHHhccc-CCHHHHHHHHHHHHHhhc
Q 008257 37 RLQPLLTQILEGPQETKLSLAAFLGDLALNS--DVKVLVARTVG-SCLINIMKS-GNMQAREAALKALNQISS 105 (572)
Q Consensus 37 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~--~~k~~i~~~g~-~~Lv~lL~s-~~~~~~~~A~~aL~~Ls~ 105 (572)
++..|.++|.++++.++..|...|-.+..+- .....|+.... ..|++++.. .++.++...+..+...+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999998888743 44556766666 889999987 788999999999998874
No 232
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.84 E-value=58 Score=32.34 Aligned_cols=140 Identities=13% Similarity=0.058 Sum_probs=85.3
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHH
Q 008257 218 ATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGL 297 (572)
Q Consensus 218 ~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~ 297 (572)
++...+..|.+++-+.....+..++.|+....+.+...+.+ .|..+++-+.+..+ .+-..|+.+++.+...-.+.
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~---vii~vvkslKNlRS--~VsraA~~t~~difs~ln~~ 163 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE---VIIAVVKSLKNLRS--AVSRAACMTLADIFSSLNNS 163 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHhcChHH--HHHHHHHHHHHHHHHHHHHH
Confidence 35556678888888889999999999997655555444543 46778888888875 77777777777765421111
Q ss_pred HHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHH
Q 008257 298 TRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKV 377 (572)
Q Consensus 298 ~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v 377 (572)
+.+ .+..++..|.... + ..+.-+.|.|-.+|..++.+ -... -+++.|+-.+... .+.+
T Consensus 164 ---i~~--~ld~lv~~Ll~ka-~-----~dnrFvreda~kAL~aMV~~-----vtp~-----~~L~~L~~~~~~~-n~r~ 221 (334)
T KOG2933|consen 164 ---IDQ--ELDDLVTQLLHKA-S-----QDNRFVREDAEKALVAMVNH-----VTPQ-----KLLRKLIPILQHS-NPRV 221 (334)
T ss_pred ---HHH--HHHHHHHHHHhhh-c-----ccchHHHHHHHHHHHHHHhc-----cChH-----HHHHHHHHHHhhh-chhh
Confidence 112 4566666665311 1 12445667777777666522 1111 1245555556666 6777
Q ss_pred HHHHHHH
Q 008257 378 QMVSATA 384 (572)
Q Consensus 378 k~~Aa~a 384 (572)
+..++..
T Consensus 222 r~~a~~~ 228 (334)
T KOG2933|consen 222 RAKAALC 228 (334)
T ss_pred hhhhhcc
Confidence 6655544
No 233
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=59.52 E-value=26 Score=30.31 Aligned_cols=71 Identities=14% Similarity=0.206 Sum_probs=51.8
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhc
Q 008257 218 ATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAE 289 (572)
Q Consensus 218 ~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~ 289 (572)
++..|-+-|.++++.++..|+.+|..+..+.+......+... ..+..|++++........++..++.++..
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~-~fl~~L~~l~~~~~~~~~Vk~kil~li~~ 108 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASK-EFLNELVKLIKPKYPLPLVKKRILELIQE 108 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 455566777889999999999999999877677665566555 78889999888766422266656555544
No 234
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=57.62 E-value=36 Score=29.38 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=52.5
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccC-CCChHHHHHHHHHHhcC
Q 008257 218 ATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISEN-VGISKEQAAAVGLLAEL 290 (572)
Q Consensus 218 ~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~-~~~~~~~~~A~~~L~~L 290 (572)
++..|-+-|.++++.++..|+.+|..+..+.+......+... ..+..|++++... .....++..++.++...
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~-~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADK-EFLLELVKIAKNSPKYDPKVREKALELILAW 110 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhH-HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 466677788899999999999999999987676665556554 5778899999764 21136776666666553
No 235
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=57.30 E-value=99 Score=27.65 Aligned_cols=141 Identities=13% Similarity=0.104 Sum_probs=70.0
Q ss_pred cHHHHHHHccC-CHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHc
Q 008257 38 LQPLLTQILEG-PQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHA 116 (572)
Q Consensus 38 i~~Lv~~L~~~-~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~ 116 (572)
++-|++.|+.+ +..+|+++.++|+.+..-|..|........+.-.. ...+........ .+. ......+...-.
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~--~~~~~~~~~~~l---~~~-~~~~~~ee~y~~ 85 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSS--ENSNDESTDISL---PMM-GISPSSEEYYPT 85 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCcccc--ccccccchhhHH---hhc-cCCCchHHHHHH
Confidence 45566777755 58899999999999977555554422111110000 000001111111 110 011122233333
Q ss_pred CChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHH
Q 008257 117 GILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVL 196 (572)
Q Consensus 117 G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL 196 (572)
.++..|++.|+.++ -..-+..+..++.++.+.-. .. + .-.-.-+||.+++.+++.++..++...+-|
T Consensus 86 vvi~~L~~iL~D~s----Ls~~h~~vv~ai~~If~~l~-~~--c------v~~L~~viP~~l~~i~~~~~~~~e~~~~qL 152 (160)
T PF11865_consen 86 VVINALMRILRDPS----LSSHHTAVVQAIMYIFKSLG-LK--C------VPYLPQVIPIFLRVIRTCPDSLREFYFQQL 152 (160)
T ss_pred HHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHhcC-cC--c------hhHHHHHhHHHHHHHHhCCHHHHHHHHHHH
Confidence 46667777776542 13344456666666654211 11 0 011245788999999876666666555444
Q ss_pred H
Q 008257 197 V 197 (572)
Q Consensus 197 ~ 197 (572)
.
T Consensus 153 ~ 153 (160)
T PF11865_consen 153 A 153 (160)
T ss_pred H
Confidence 3
No 236
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=56.74 E-value=70 Score=34.58 Aligned_cols=102 Identities=17% Similarity=0.232 Sum_probs=72.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc---CcchhHHHHhhhHH
Q 008257 3 SSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL---NSDVKVLVARTVGS 79 (572)
Q Consensus 3 ~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~---~~~~k~~i~~~g~~ 79 (572)
.+.|.|..++...+.+|..++.+=.-+....-.|.+..|.+++-+....+|++|..+|..+-. +++|+. + .
T Consensus 99 g~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~--~----n 172 (885)
T COG5218 99 GTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRI--V----N 172 (885)
T ss_pred cccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHH--H----H
Confidence 457888888888888888888655555666667889999999999999999999999987653 333322 1 4
Q ss_pred HHHHhccc-CCHHHHHHHHHHHHHhhcCCCcHHHH
Q 008257 80 CLINIMKS-GNMQAREAALKALNQISSCEPSAKVL 113 (572)
Q Consensus 80 ~Lv~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~~i 113 (572)
.|+.+++. ++.+++..| |.|+..++...-.|
T Consensus 173 ~l~~~vqnDPS~EVRr~a---llni~vdnsT~p~I 204 (885)
T COG5218 173 LLKDIVQNDPSDEVRRLA---LLNISVDNSTYPCI 204 (885)
T ss_pred HHHHHHhcCcHHHHHHHH---HHHeeeCCCcchhH
Confidence 66667765 445677665 45777665544333
No 237
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=56.04 E-value=3.7e+02 Score=30.96 Aligned_cols=155 Identities=8% Similarity=0.171 Sum_probs=98.5
Q ss_pred hH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257 77 VG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD 155 (572)
Q Consensus 77 g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~ 155 (572)
++ ..|+++....+.++-..-..+|....+.++......++-..|.++.+....+ .++-+-..+-.++..+......
T Consensus 530 ~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s---~DP~V~~~~qd~f~el~q~~~~ 606 (1005)
T KOG2274|consen 530 MILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYS---EDPQVASLAQDLFEELLQIAAN 606 (1005)
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhc---CCchHHHHHHHHHHHHHHHHHh
Confidence 44 5677777766677777777888888887766666678888888888776543 2356666677777777653322
Q ss_pred CCccccCCCccccchhhhHHHHHHHHhcCC----hhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhc-CCC
Q 008257 156 FDSITVGPDNQTLVSEDIVHNLLHLISNTG----PTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE-APQ 230 (572)
Q Consensus 156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~----~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~ 230 (572)
+. . -.+..||.++..|.... +....-++-.|--+-.+..+ ..-..+. +-++|++.+..- ++|
T Consensus 607 ~g---------~-m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~--pL~~~l~-~~~FpaVak~tlHsdD 673 (1005)
T KOG2274|consen 607 YG---------P-MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPS--PLPNLLI-CYAFPAVAKITLHSDD 673 (1005)
T ss_pred hc---------c-hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCC--CccHHHH-HHHhHHhHhheeecCC
Confidence 11 1 23568999999998655 45555555555544333221 1112221 456777777654 455
Q ss_pred HHHHHHHHHHHHHcCCC
Q 008257 231 NDLRLASIELIQNLSPH 247 (572)
Q Consensus 231 ~~v~~~a~~~L~~Ls~~ 247 (572)
.+.-.++-.+|+.+-..
T Consensus 674 ~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 674 HETLQNATECLRALISV 690 (1005)
T ss_pred hHHHHhHHHHHHHHHhc
Confidence 67788888888887644
No 238
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=55.63 E-value=1.9e+02 Score=28.09 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=87.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhh--hH-HHHHHhccc----CCHHHHHHHHHHHHHhhcCCCcHHH
Q 008257 40 PLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVART--VG-SCLINIMKS----GNMQAREAALKALNQISSCEPSAKV 112 (572)
Q Consensus 40 ~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~--g~-~~Lv~lL~s----~~~~~~~~A~~aL~~Ls~~~~~~~~ 112 (572)
.+.+.+.+=+.+.+.-+...++-++.+...-..+... ++ ..+..++.. ..+..+.-+++++.|+-.++..+..
T Consensus 67 ~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~ 146 (268)
T PF08324_consen 67 LLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQL 146 (268)
T ss_dssp HHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHH
Confidence 3334444434344444444444344454444444333 23 444444433 4567789999999999999998888
Q ss_pred HHH-cC-ChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHh--cCChhH
Q 008257 113 LIH-AG-ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS--NTGPTI 188 (572)
Q Consensus 113 iv~-~G-~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~--~~~~~~ 188 (572)
+.. .+ .|...+..+..... +....+|..++..+.|++..-.... .+.. .....+..+++.+. ..++|.
T Consensus 147 ~~~~~~~~i~~~~~~~~~~~~-~~~kn~~~A~ATl~~Nlsv~~~~~~---~~~~----~~~~ll~~i~~~~~~~~~d~Ea 218 (268)
T PF08324_consen 147 LLSHFDSSILELLSSLLSSLL-DSNKNVRIALATLLLNLSVLLHKNR---SDEE----WQSELLSSIIEVLSREESDEEA 218 (268)
T ss_dssp HHCTHHTCHHHHCHCCCTTS--HHHHHHHHHHHHHHHHHHHHHHHCT---S-CC----HHHHHHHHHHHHCHCCHTSHHH
T ss_pred HHhcccchHHHHHHHHhhccc-cccHHHHHHHHHHHHHHHHHHHhcC---CChH----HHHHHHHHHHHHhccccCCHHH
Confidence 773 33 34444443332100 0037889999999999975311100 0000 11224555666333 268999
Q ss_pred HHHHHHHHHHccCCC
Q 008257 189 ECKLLQVLVGLTSSP 203 (572)
Q Consensus 189 q~~a~~aL~~l~~~~ 203 (572)
..+++-+|..+...+
T Consensus 219 ~~R~LvAlGtL~~~~ 233 (268)
T PF08324_consen 219 LYRLLVALGTLLSSS 233 (268)
T ss_dssp HHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999998554
No 239
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=55.34 E-value=52 Score=28.39 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=54.4
Q ss_pred chHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHH-HHHHHHHHHHHHH
Q 008257 444 AVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTEN-LQRRAVWVVERIL 517 (572)
Q Consensus 444 ~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~-~~~~a~~~l~~l~ 517 (572)
++..|-+=|.++++.++..|+..|-.++.+-.. .....|.+.+-+..|..++....+.. +++++..++....
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~--~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGS--KFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH--HHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 777888889999999999999999999987321 22345666667778888885444434 8888888877664
No 240
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=54.24 E-value=1.5e+02 Score=28.76 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=69.1
Q ss_pred hhhHHHHHHHHhcCC---hhH---HH--HHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHH
Q 008257 171 EDIVHNLLHLISNTG---PTI---EC--KLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQ 242 (572)
Q Consensus 171 ~~~i~~Lv~lL~~~~---~~~---q~--~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~ 242 (572)
+..+|.|+++|.... .+. .. --..+++-|+. +++..+.++++++++.++.. +.
T Consensus 30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq-----------~re~~A~~~li~l~~~~~~~--------~~ 90 (249)
T PF06685_consen 30 EEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQ-----------FREERALPPLIRLFSQDDDF--------LE 90 (249)
T ss_pred HHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHH-----------HhhhhhHHHHHHHHcCCcch--------HH
Confidence 457888988886311 111 00 11344443432 34577999999999876641 11
Q ss_pred HcCCC-CChhHHHHHhcc-cCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHh
Q 008257 243 NLSPH-MGHELADALRGA-VGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVK 315 (572)
Q Consensus 243 ~Ls~~-~~~~~~~~i~~~-~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~ 315 (572)
.+..+ ..+++.+.+..- .|-+..|-+++.+++--..+|.+|..+|..++...+..++.++ ..+-.++.
T Consensus 91 ~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi-----~~f~~ll~ 160 (249)
T PF06685_consen 91 DLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVI-----QYFRELLN 160 (249)
T ss_pred HHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHH-----HHHHHHHH
Confidence 11111 122222222110 1778889999888874346889999999888776666555444 44445554
No 241
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=53.78 E-value=57 Score=28.47 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=54.4
Q ss_pred CcHHHHHHHccCCHHHHHHHHHHHHHhccC--cchhHHHHhhhH-HHHHHhccc------CCHHHHHHHHHHHHHhhc
Q 008257 37 RLQPLLTQILEGPQETKLSLAAFLGDLALN--SDVKVLVARTVG-SCLINIMKS------GNMQAREAALKALNQISS 105 (572)
Q Consensus 37 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~--~~~k~~i~~~g~-~~Lv~lL~s------~~~~~~~~A~~aL~~Ls~ 105 (572)
++..+.++|+++++.++..|...|-.+..+ ......|+.... .-|+++++. .++.++...+..+..-+.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 467788999999999999999998888773 445567776666 889999963 457889988888877664
No 242
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=52.34 E-value=52 Score=27.63 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=29.1
Q ss_pred chHHHHHhhcCCCHhHHHHHHHHHHHhhhcC
Q 008257 444 AVEKLIALLDHTNEKVVEASLAALSTVIDDG 474 (572)
Q Consensus 444 ~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~ 474 (572)
+|+.||+-|.+++++|+..|+.+|...+.++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 8999999999999999999999999999775
No 243
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=52.22 E-value=27 Score=28.86 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhcc
Q 008257 93 REAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTV 129 (572)
Q Consensus 93 ~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~ 129 (572)
-...++.+..|+..++-...+++.|+++.|++||...
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~He 99 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHE 99 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCC
Confidence 4668888999999999899999999999999999753
No 244
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=52.19 E-value=48 Score=37.52 Aligned_cols=71 Identities=15% Similarity=0.251 Sum_probs=51.9
Q ss_pred ChhHHHHHHHHHHHccCCCCcc--------------------------------HHHHHHHHhcCChHHHHHHhcCCCH-
Q 008257 185 GPTIECKLLQVLVGLTSSPTTV--------------------------------LSVVSAIKSSGATISLVQFVEAPQN- 231 (572)
Q Consensus 185 ~~~~q~~a~~aL~~l~~~~~~~--------------------------------~~~~~~i~~~g~i~~Lv~lL~~~~~- 231 (572)
+|+++..|+.+|.++...+... +..+.+++...||..|++||+.+.|
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~ 754 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPP 754 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Confidence 7788888888887765543110 3456777889999999999987653
Q ss_pred ----HHHHHHHHHHHHcCCCCChhHHHHHh
Q 008257 232 ----DLRLASIELIQNLSPHMGHELADALR 257 (572)
Q Consensus 232 ----~v~~~a~~~L~~Ls~~~~~~~~~~i~ 257 (572)
.+|..|+++|--|+++. ++++.+.
T Consensus 755 t~aD~IRalAc~~L~GLaR~~--tVrQIlt 782 (1516)
T KOG1832|consen 755 TTADCIRALACRVLLGLARDD--TVRQILT 782 (1516)
T ss_pred CcHHHHHHHHHHHHhccccCc--HHHHHHH
Confidence 58999999999999873 4443333
No 245
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=51.78 E-value=2.3e+02 Score=32.62 Aligned_cols=183 Identities=16% Similarity=0.192 Sum_probs=106.5
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHH-HHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257 80 CLINIMKSGNMQAREAALKALNQISSCEPSAKVL-IHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS 158 (572)
Q Consensus 80 ~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~i-v~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~ 158 (572)
.|-.-+.+.+-.-+..|+..+.....+.. .... ...|.+-.++..... |....+...|+.+|..|+..-....
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~k----DaN~~v~~~aa~~l~~ia~~lr~~~- 330 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLK----DANINVVMLAAQILELIAKKLRPLF- 330 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhcc----CcchhHHHHHHHHHHHHHHhcchhh-
Confidence 34444444555667777777777665544 1111 123334444443332 2347788899999999986421100
Q ss_pred cccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHH
Q 008257 159 ITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASI 238 (572)
Q Consensus 159 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~ 238 (572)
.=...++.+.++.-+..-.+.++..+..++-.++..... ...++....++.++++..+....
T Consensus 331 --------~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l----------~~~~~~I~e~lk~knp~~k~~~~ 392 (815)
T KOG1820|consen 331 --------RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL----------SKMSEAILEALKGKNPQIKGECL 392 (815)
T ss_pred --------HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH----------HHHHHHHHHHhcCCChhhHHHHH
Confidence 012345777888888877888888777777666553321 22456677889999999888876
Q ss_pred HHHHHcCCCCC-hhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcC
Q 008257 239 ELIQNLSPHMG-HELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAEL 290 (572)
Q Consensus 239 ~~L~~Ls~~~~-~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L 290 (572)
..+.......+ ....+.-.. +.++.++......+. ++|.+|..++.-+
T Consensus 393 ~~l~r~~~~~~~~~~~~~t~~--~l~p~~~~~~~D~~~--~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 393 LLLDRKLRKLGPKTVEKETVK--TLVPHLIKHINDTDK--DVRKAALEAVAAV 441 (815)
T ss_pred HHHHHHHhhcCCcCcchhhHH--HHhHHHhhhccCCcH--HHHHHHHHHHHHH
Confidence 66655543322 111111111 456666666555453 8888888776554
No 246
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=51.36 E-value=2.6e+02 Score=30.81 Aligned_cols=141 Identities=18% Similarity=0.158 Sum_probs=81.7
Q ss_pred hHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhc-CCCCCccccCCCccccchhhhHHHHHHHHhc----CChhHHHHHH
Q 008257 119 LPPLVKDLFTVGSNHLPMRLKEVSATILANVVNS-GHDFDSITVGPDNQTLVSEDIVHNLLHLISN----TGPTIECKLL 193 (572)
Q Consensus 119 i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~-~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~----~~~~~q~~a~ 193 (572)
+..+..++.++.. ...+.++..|.-++++++.. +.+... .........++.+.+.|.. .+.+-+.-++
T Consensus 395 l~~l~~l~~~~~~-~~~~~l~~sa~l~~~~lv~~~c~~~~~------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 467 (574)
T smart00638 395 LKALFELAESPEV-QKQPYLRESALLAYGSLVRRYCVNTPS------CPDFVLEELLKYLHELLQQAVSKGDEEEIQLYL 467 (574)
T ss_pred HHHHHHHhcCccc-cccHHHHHHHHHHHHHHHHHHhcCCCC------CChhhHHHHHHHHHHHHHHHHhcCCchheeeHH
Confidence 4556666664321 12245677777777777752 111100 0011224567777777653 3444456678
Q ss_pred HHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcC-C--CHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhh
Q 008257 194 QVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA-P--QNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVI 270 (572)
Q Consensus 194 ~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~--~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL 270 (572)
++|.|+.... .++.|..++.. . ...+|..|+++|+.++...+..++ +.|+.++
T Consensus 468 kaLGN~g~~~--------------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~----------~~l~~i~ 523 (574)
T smart00638 468 KALGNAGHPS--------------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ----------EVLLPIY 523 (574)
T ss_pred HhhhccCChh--------------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH----------HHHHHHH
Confidence 8887776432 34555555552 2 357999999999988765444432 3455556
Q ss_pred ccCCCChHHHHHHHHHHhcC
Q 008257 271 SENVGISKEQAAAVGLLAEL 290 (572)
Q Consensus 271 ~~~~~~~~~~~~A~~~L~~L 290 (572)
.+...-.++|.+|..+|-..
T Consensus 524 ~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 524 LNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred cCCCCChHHHHHHHHHHHhc
Confidence 55443358999888877664
No 247
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=51.31 E-value=81 Score=27.78 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=19.4
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHhh
Q 008257 534 TALVDAFQHADYRTRQIAERALKHI 558 (572)
Q Consensus 534 ~~Lv~ll~~~~~~~~~~Aa~aL~~L 558 (572)
.+||++|.+.|..+...|+.+|.+-
T Consensus 97 ~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 97 QPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp HHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 6999999999999999999999874
No 248
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=49.93 E-value=1.4e+02 Score=33.24 Aligned_cols=122 Identities=14% Similarity=0.098 Sum_probs=85.6
Q ss_pred CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHH-HHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHH
Q 008257 4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLT-QILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLI 82 (572)
Q Consensus 4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~-~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv 82 (572)
++..|..+|+.++..+...+..=+ ...++.-.+|.+-. .+++.+..+|.+.+.++..+...-+ +..+.+ -.+++.
T Consensus 398 ~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD-~~~v~d-~~lpi~ 473 (700)
T KOG2137|consen 398 LEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD-KAAVLD-ELLPIL 473 (700)
T ss_pred hcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH-HHHhHH-HHHHHH
Confidence 466788899999998888876322 34445556655544 3456788899999999988772111 112211 126777
Q ss_pred HhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhcc
Q 008257 83 NIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTV 129 (572)
Q Consensus 83 ~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~ 129 (572)
+..+..+++.....+++..++.....+.+.......+|.++.+...+
T Consensus 474 ~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 474 KCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 77788999999999999999998766655666778899998887653
No 249
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=49.05 E-value=3.2e+02 Score=28.92 Aligned_cols=144 Identities=12% Similarity=0.224 Sum_probs=89.8
Q ss_pred chHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhh
Q 008257 361 LAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLL 440 (572)
Q Consensus 361 ~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~ 440 (572)
++-.+++.|....++-.|+.|...|..+..+.+.. ++. .
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~--------------l~D-----------------------s---- 368 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR--------------LFD-----------------------S---- 368 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh--------------hhc-----------------------h----
Confidence 34567788887448889999999998887654311 000 0
Q ss_pred hccchHHHHHhhcCCCHhHHHHHHHHHH-HhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257 441 EGHAVEKLIALLDHTNEKVVEASLAALS-TVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT 519 (572)
Q Consensus 441 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~-~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~ 519 (572)
..-+|..+++.=..+.++|...|..... .++++.+ .+ . |..+..++. ..|+..-..++..+-+++..
T Consensus 369 tE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P-~~----~------I~~i~~~Il-t~D~~~~~~~iKm~Tkl~e~ 436 (516)
T KOG2956|consen 369 TEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP-LQ----C------IVNISPLIL-TADEPRAVAVIKMLTKLFER 436 (516)
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc-hh----H------HHHHhhHHh-cCcchHHHHHHHHHHHHHhh
Confidence 1125555566556677777777776544 4444433 11 1 334445564 45665556666677788854
Q ss_pred ---hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257 520 ---DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK 560 (572)
Q Consensus 520 ---~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~ 560 (572)
++....+.. +.+.+++-+.+.+..||+.|.-+|--+..
T Consensus 437 l~~EeL~~ll~d---iaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 437 LSAEELLNLLPD---IAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred cCHHHHHHhhhh---hhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 444444433 44589999999999999999988876543
No 250
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=48.67 E-value=70 Score=27.81 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=52.8
Q ss_pred chHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHH---HHHHHHHHHHHHH
Q 008257 444 AVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTEN---LQRRAVWVVERIL 517 (572)
Q Consensus 444 ~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~---~~~~a~~~l~~l~ 517 (572)
++..|-+=|.++++.++..|+..|-.++.+..+ .....+....-+..|..++....... +++++..++....
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~--~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGP--RFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH--HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH--HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 778899999999999999999999999987531 22234444445566778775455544 8888888876664
No 251
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=48.13 E-value=1.3e+02 Score=33.51 Aligned_cols=134 Identities=18% Similarity=0.185 Sum_probs=88.0
Q ss_pred hhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCC
Q 008257 76 TVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGH 154 (572)
Q Consensus 76 ~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~ 154 (572)
+-+ |.|..-++..+..+|+.++..+...+..-+ -..+..-.+|.+-++-.. + ....+|.+++-+++.+...-.
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~-t---t~~~vkvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFK-T---TNLYVKVNVLPCLAGLIQRLD 461 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhc-c---cchHHHHHHHHHHHHHHHHHH
Confidence 346 888888899999999999999999886544 344566678888887433 2 247889999999999874321
Q ss_pred CCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCH
Q 008257 155 DFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQN 231 (572)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 231 (572)
.+ ..-.-+.++.+-.+..+|.+....+++...+.....+. ..+.-...+|.++.+...+.-
T Consensus 462 ~~------------~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g----~ev~~~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 462 KA------------AVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG----VEVMAENVLPLLIPLSVAPSL 522 (700)
T ss_pred HH------------HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc----eeeehhhhhhhhhhhhhcccc
Confidence 11 11123445555556788888888877766665442220 112235678888877766553
No 252
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=46.66 E-value=1.2e+02 Score=31.33 Aligned_cols=149 Identities=13% Similarity=0.136 Sum_probs=79.6
Q ss_pred hcCChHHHHHHhcCCC-HHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhh-ccCCCChHHHHHHHHHHhcCCC
Q 008257 215 SSGATISLVQFVEAPQ-NDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVI-SENVGISKEQAAAVGLLAELPE 292 (572)
Q Consensus 215 ~~g~i~~Lv~lL~~~~-~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL-~~~~~~~~~~~~A~~~L~~L~~ 292 (572)
|..-.+.+-.-++..+ ..-|..|...|+.|++..+..+...+. +.+..++.-. .++...-..+..|+.++..|+.
T Consensus 208 EddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~---~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~ 284 (370)
T PF08506_consen 208 EDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM---QYIQQLLQQYASNPSNNWRSKDGALYLIGALAS 284 (370)
T ss_dssp HHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHB
T ss_pred ccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHh
Confidence 4444455555555444 356778889999998653333322222 1233332211 1232212567778887777755
Q ss_pred CcHHH------------HHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcC
Q 008257 293 RDLGL------------TRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHN 360 (572)
Q Consensus 293 ~~~~~------------~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g 360 (572)
..... ...+...-++|-|. .+ ....+.++..|+..+..+...+ +++ .+ .+
T Consensus 285 k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~---~~--------~~~~piLka~aik~~~~Fr~~l--~~~---~l--~~ 346 (370)
T PF08506_consen 285 KGSTTKSGVTQTNELVDVVDFFSQHVLPELQ---PD--------VNSHPILKADAIKFLYTFRNQL--PKE---QL--LQ 346 (370)
T ss_dssp SS--BTTB-S-B-TTS-HHHHHHHHTCHHHH----S--------S-S-HHHHHHHHHHHHHHGGGS---HH---HH--HH
T ss_pred hhccccCCcccccccccHHHHHHHHhHHHhc---cc--------CCCCcchHHHHHHHHHHHHhhC--CHH---HH--HH
Confidence 33211 12233333333332 11 1134567777888888887542 222 12 24
Q ss_pred chHHHHHHhccCCcHHHHHHHHHHH
Q 008257 361 LAALFIELLQSNGLDKVQMVSATAL 385 (572)
Q Consensus 361 ~i~~Lv~lL~~~~~~~vk~~Aa~aL 385 (572)
++|.++.+|.++ +.-|...||.++
T Consensus 347 ~~~~l~~~L~~~-~~vv~tyAA~~i 370 (370)
T PF08506_consen 347 IFPLLVNHLQSS-SYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTTSS--HHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CcchhhhhhhhC
Confidence 789999999999 888999999875
No 253
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=45.80 E-value=1e+02 Score=30.49 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=25.9
Q ss_pred ChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC
Q 008257 118 ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG 153 (572)
Q Consensus 118 ~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~ 153 (572)
.+|+++.+++.. .+..|..++.+|..+....
T Consensus 120 iiP~iL~llDD~-----~~~~K~~G~~lL~~ll~~~ 150 (282)
T PF10521_consen 120 IIPPILNLLDDY-----SPEIKIQGCQLLHHLLEKV 150 (282)
T ss_pred HHhhHHHHhcCC-----CHHHHHHHHHHHHHHHHhC
Confidence 689999999753 4899999999999998754
No 254
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=45.64 E-value=4.1e+02 Score=28.42 Aligned_cols=72 Identities=8% Similarity=-0.018 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCH---HHHHHHHHHHHHhccCcchhHH-HHhhhH-HHHH
Q 008257 8 NLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQ---ETKLSLAAFLGDLALNSDVKVL-VARTVG-SCLI 82 (572)
Q Consensus 8 ~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~---~~~~~aa~~L~~l~~~~~~k~~-i~~~g~-~~Lv 82 (572)
.+++++.+.+.|..+.......-.+...-++..+ -...++ ..+.+|..+|. . +.|.. ..+..+ |.|.
T Consensus 42 p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I---~~~~~~~d~~~~l~aL~~LT---~--~Grdi~~~~~~i~~~L~ 113 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQDSSSGLMRAEFFRDI---SDPSNDDDFDLRLEALIALT---D--NGRDIDFFEYEIGPFLL 113 (464)
T ss_pred CHHHHHHHHHHHHHHHHccccccHHHHHHHHHHH---hcCCCchhHHHHHHHHHHHH---c--CCcCchhcccchHHHHH
Confidence 3457777777777777644332112222122222 111222 24555544444 2 22322 235556 8888
Q ss_pred Hhccc
Q 008257 83 NIMKS 87 (572)
Q Consensus 83 ~lL~s 87 (572)
.+|..
T Consensus 114 ~wl~~ 118 (464)
T PF11864_consen 114 SWLEP 118 (464)
T ss_pred HHHHH
Confidence 88753
No 255
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.89 E-value=1.8e+02 Score=30.94 Aligned_cols=142 Identities=10% Similarity=0.103 Sum_probs=79.2
Q ss_pred ccCCHHHHHHHHHHHHHhccC-c-chhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHH-
Q 008257 46 LEGPQETKLSLAAFLGDLALN-S-DVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPP- 121 (572)
Q Consensus 46 ~~~~~~~~~~aa~~L~~l~~~-~-~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~- 121 (572)
.+++...|..|+..|++++.. + +.+... ..-. ..+-.+.+..+.+++..|..+|..+...-.+++. +.+.++.
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l--~~~~l~ia 344 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL--ESYLLNIA 344 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch--hhhchhHH
Confidence 356667788899999998874 3 333221 1122 3333445556689999999999988865444432 3444444
Q ss_pred --HHHHHhccCCCCCCcchHHHHHHHHHHHHhcCC-CCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHH
Q 008257 122 --LVKDLFTVGSNHLPMRLKEVSATILANVVNSGH-DFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVG 198 (572)
Q Consensus 122 --Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~-~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~ 198 (572)
+..++.+. .+.++..|....+.|+.... .|+.+.+++ ..+...+|+-.|.++.|.+ ..|++....
T Consensus 345 lrlR~l~~se-----~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~------v~k~~~~lllhl~d~~p~v-a~ACr~~~~ 412 (533)
T KOG2032|consen 345 LRLRTLFDSE-----DDKMRAAAFVLFGALAKLAGGGWEEFFTEQ------VKKRLAPLLLHLQDPNPYV-ARACRSELR 412 (533)
T ss_pred HHHHHHHHhc-----ChhhhhhHHHHHHHHHHHcCCCchhhhHHH------HHhccccceeeeCCCChHH-HHHHHHHHH
Confidence 33455543 47888888888888876432 244333210 1111223334444444433 345566555
Q ss_pred ccCC
Q 008257 199 LTSS 202 (572)
Q Consensus 199 l~~~ 202 (572)
.|..
T Consensus 413 ~c~p 416 (533)
T KOG2032|consen 413 TCYP 416 (533)
T ss_pred hcCc
Confidence 5544
No 256
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=44.86 E-value=79 Score=29.07 Aligned_cols=65 Identities=14% Similarity=0.269 Sum_probs=52.8
Q ss_pred chHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257 444 AVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL 517 (572)
Q Consensus 444 ~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~ 517 (572)
-++.++++.-+++..++..|+..+..+..-|-.+.. ..+|.|+.+. .++++.++..|...+..+.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~-ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALE-TSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhh-CCCChHHHHHHHHHHHHHH
Confidence 567788888899999999999999988876642221 2578898888 6899999999999888776
No 257
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.56 E-value=5.6e+02 Score=29.45 Aligned_cols=228 Identities=13% Similarity=0.152 Sum_probs=122.6
Q ss_pred HHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHcc
Q 008257 121 PLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLT 200 (572)
Q Consensus 121 ~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~ 200 (572)
++=+.+++-+ +.-+-+|..+...|..+..... +...+..++++...+..|++.++.+=-+|++.+..||
T Consensus 728 ~~qeai~sl~--d~qvpik~~gL~~l~~l~e~r~---------~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lc 796 (982)
T KOG4653|consen 728 PLQEAISSLH--DDQVPIKGYGLQMLRHLIEKRK---------KATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLC 796 (982)
T ss_pred HHHHHHHHhc--CCcccchHHHHHHHHHHHHhcc---------hhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHH
Confidence 3444444433 2335678888899998876321 1134567889999999999999999889998777776
Q ss_pred CCCCccHHHHHHHHhcCChHHHHH-HhcCCC---HHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCC
Q 008257 201 SSPTTVLSVVSAIKSSGATISLVQ-FVEAPQ---NDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGI 276 (572)
Q Consensus 201 ~~~~~~~~~~~~i~~~g~i~~Lv~-lL~~~~---~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~ 276 (572)
... ....+|.|.+ ..+.++ ++.+...-.++.++....++-+.+... -.+...++..+.++.
T Consensus 797 evy-----------~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~---~Li~tfl~gvrepd~- 861 (982)
T KOG4653|consen 797 EVY-----------PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA---VLINTFLSGVREPDH- 861 (982)
T ss_pred Hhc-----------chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH---HHHHHHHHhcCCchH-
Confidence 543 2335666666 333221 233333335555555433332222211 134555566665543
Q ss_pred hHHHHHHHHHHhcCCCCcHH-HHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHH
Q 008257 277 SKEQAAAVGLLAELPERDLG-LTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIAL 355 (572)
Q Consensus 277 ~~~~~~A~~~L~~L~~~~~~-~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~ 355 (572)
..|..+.+.+++|+.-... ....+. ..+..++++.+. + ....++..|+..+..+-.+ ...+.-..
T Consensus 862 -~~RaSS~a~lg~Lcq~~a~~vsd~~~--ev~~~Il~l~~~---d------~s~~vRRaAv~li~~lL~~--tg~dlLpi 927 (982)
T KOG4653|consen 862 -EFRASSLANLGQLCQLLAFQVSDFFH--EVLQLILSLETT---D------GSVLVRRAAVHLLAELLNG--TGEDLLPI 927 (982)
T ss_pred -HHHHhHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHcc---C------CchhhHHHHHHHHHHHHhc--cchhhHHH
Confidence 6688888888887542110 001111 122333333332 1 1345567777777666533 22222222
Q ss_pred HH--HcCchHHHHHHhccCCcHHHHHHHHHHHHHh
Q 008257 356 CC--EHNLAALFIELLQSNGLDKVQMVSATALENL 388 (572)
Q Consensus 356 i~--~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~l 388 (572)
.+ ..+....+....+...++.+|.+|.-++..+
T Consensus 928 lr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 928 LRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 21 1222333344444444677888888888665
No 258
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=42.78 E-value=1e+02 Score=37.33 Aligned_cols=106 Identities=12% Similarity=0.247 Sum_probs=67.2
Q ss_pred ccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH-cch
Q 008257 442 GHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL-RTD 520 (572)
Q Consensus 442 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~-~~~ 520 (572)
.+.+..++..|+++...++..|+.+|..++.-++- .+..-..-..+..-+ ....-.+|+.|+.++.++. .++
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~------vL~~~dvq~~Vh~R~-~DssasVREAaldLvGrfvl~~~ 887 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPS------VLSRPDVQEAVHGRL-NDSSASVREAALDLVGRFVLSIP 887 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH------hhcCHHHHHHHHHhh-ccchhHHHHHHHHHHhhhhhccH
Confidence 45678888899999999999999999999864431 111111111233445 3677888999999998877 334
Q ss_pred hhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257 521 DIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK 560 (572)
Q Consensus 521 ~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~ 560 (572)
+...++-. .+.+-..+...-||++|-++|..++.
T Consensus 888 e~~~qyY~------~i~erIlDtgvsVRKRvIKIlrdic~ 921 (1692)
T KOG1020|consen 888 ELIFQYYD------QIIERILDTGVSVRKRVIKILRDICE 921 (1692)
T ss_pred HHHHHHHH------HHHhhcCCCchhHHHHHHHHHHHHHH
Confidence 44333322 23444455556677777777766654
No 259
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=42.71 E-value=2.5e+02 Score=30.60 Aligned_cols=103 Identities=17% Similarity=0.238 Sum_probs=71.3
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS 158 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~ 158 (572)
..++.-+.+.+..++..++..|+.++..-.-.+..+-.|.+..|.+-+... -+.+|..|.-+|..+-....+.
T Consensus 94 ~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DR-----E~~VR~eAv~~L~~~Qe~~~ne-- 166 (885)
T COG5218 94 YHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDR-----EKAVRREAVKVLCYYQEMELNE-- 166 (885)
T ss_pred HHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcc-----hHHHHHHHHHHHHHHHhccCCh--
Confidence 788888889999999999999999986655555666667777776644432 2789999999999885432221
Q ss_pred cccCCCccccchhhhHHHHHHHHhc-CChhHHHHHHHHHHHccCC
Q 008257 159 ITVGPDNQTLVSEDIVHNLLHLISN-TGPTIECKLLQVLVGLTSS 202 (572)
Q Consensus 159 ~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~ 202 (572)
+...+..|+.++++ ++.+++..|+ .++..+
T Consensus 167 -----------en~~~n~l~~~vqnDPS~EVRr~al---lni~vd 197 (885)
T COG5218 167 -----------ENRIVNLLKDIVQNDPSDEVRRLAL---LNISVD 197 (885)
T ss_pred -----------HHHHHHHHHHHHhcCcHHHHHHHHH---HHeeeC
Confidence 12345566667764 6778887664 444444
No 260
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=42.32 E-value=3.4e+02 Score=26.54 Aligned_cols=173 Identities=10% Similarity=0.083 Sum_probs=93.1
Q ss_pred CChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCC--ccccchhhhHHHHHHHHhcCCh----hHHH
Q 008257 117 GILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPD--NQTLVSEDIVHNLLHLISNTGP----TIEC 190 (572)
Q Consensus 117 G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~--~~~l~~~~~i~~Lv~lL~~~~~----~~q~ 190 (572)
|..+-+..++-.+ -.+...-+.+..+|..|+....+ -.+|.. +-.+.--..+|.++.-+..+.+ +.-.
T Consensus 60 ~~f~Glq~Ll~KG---L~Ss~t~e~tl~lL~~L~~~~~~---~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~ 133 (262)
T PF14225_consen 60 GNFEGLQPLLLKG---LRSSSTYELTLRLLSRLTPLPDD---PLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECI 133 (262)
T ss_pred CCchhHHHHHhCc---cCCCCcHHHHHHHHHHHhcCCCc---cccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHH
Confidence 4444444444332 12245678888999999876433 133322 3333344567777777766651 2223
Q ss_pred HHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhh
Q 008257 191 KLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVE-APQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRV 269 (572)
Q Consensus 191 ~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~l 269 (572)
..+..|..+|.... ...+..+..... ........-...+..++++.-..+. -. ..+-.|+++
T Consensus 134 ~~A~~La~~a~~~~-----------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~---~~---~~l~~Ll~l 196 (262)
T PF14225_consen 134 EIAEALAQVAEAQG-----------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDH---EF---QILTFLLGL 196 (262)
T ss_pred HHHHHHHHHHHhCC-----------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchh---HH---HHHHHHHHH
Confidence 55566666664321 223333333332 2222233333344444443211111 01 346679999
Q ss_pred hccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhh
Q 008257 270 ISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS 316 (572)
Q Consensus 270 L~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~ 316 (572)
|.++.+ ..|...+.+|..+-.. .+.++. ...+.+.++.++|+.
T Consensus 197 L~n~~~--w~~~~~L~iL~~ll~~-~d~~~~-~~~dlispllrlL~t 239 (262)
T PF14225_consen 197 LENGPP--WLRRKTLQILKVLLPH-VDMRSP-HGADLISPLLRLLQT 239 (262)
T ss_pred HhCCcH--HHHHHHHHHHHHHhcc-ccCCCC-cchHHHHHHHHHhCC
Confidence 998875 7888888888776542 222222 556788999999875
No 261
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=42.26 E-value=1.7e+02 Score=23.84 Aligned_cols=51 Identities=18% Similarity=0.129 Sum_probs=43.3
Q ss_pred hhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHH
Q 008257 76 TVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDL 126 (572)
Q Consensus 76 ~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL 126 (572)
... ..|+++.+......++.++..|..|..++.....+.+-|++..|-++=
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHH
Confidence 355 788888888777789999999999999988888899999999966654
No 262
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=41.73 E-value=3.2e+02 Score=26.08 Aligned_cols=143 Identities=20% Similarity=0.160 Sum_probs=89.9
Q ss_pred cHHHHH-HHccCCHHHHHHHHHHHHHhccCc-chhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 008257 38 LQPLLT-QILEGPQETKLSLAAFLGDLALNS-DVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIH 115 (572)
Q Consensus 38 i~~Lv~-~L~~~~~~~~~~aa~~L~~l~~~~-~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~ 115 (572)
++.|+. .-+..+++.+.....+|..++.++ .+...+ ...|+.+.+.+..+.+-.+.+.+..+....+-. .
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~-f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV----LQTLVSLVEQGSLELRYVALRLLTLLWKANDRH-F--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH-H---
Confidence 344554 334567888888899999998865 433332 267777777777777777888888887643322 1
Q ss_pred cCChHHHHHHH--h---ccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHH-hcCChhHH
Q 008257 116 AGILPPLVKDL--F---TVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLI-SNTGPTIE 189 (572)
Q Consensus 116 ~G~i~~Lv~lL--~---s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL-~~~~~~~q 189 (572)
|.+..++..+ + +....+...+.....+..+..++...++ .-...++.+...| ...++.++
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-------------~g~~ll~~ls~~L~~~~~~~~~ 139 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-------------HGVDLLPLLSGCLNQSCDEVAQ 139 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-------------hHHHHHHHHHHHHhccccHHHH
Confidence 4444444441 1 1111122234444556777778775442 1245788888888 67788888
Q ss_pred HHHHHHHHHccCC
Q 008257 190 CKLLQVLVGLTSS 202 (572)
Q Consensus 190 ~~a~~aL~~l~~~ 202 (572)
..++.+|..+|..
T Consensus 140 alale~l~~Lc~~ 152 (234)
T PF12530_consen 140 ALALEALAPLCEA 152 (234)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999888843
No 263
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=41.49 E-value=38 Score=28.02 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHH
Q 008257 12 VEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQET 52 (572)
Q Consensus 12 ~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~ 52 (572)
...+.+.++.|+..++--..+++.|+++.|+.+|.+.|.+.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DI 103 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDI 103 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcce
Confidence 34566788888888888899999999999999999988765
No 264
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=40.99 E-value=1.3e+02 Score=27.65 Aligned_cols=145 Identities=16% Similarity=0.292 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhhcC-C-----CcHHHHH------HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCcc
Q 008257 92 AREAALKALNQISSC-E-----PSAKVLI------HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSI 159 (572)
Q Consensus 92 ~~~~A~~aL~~Ls~~-~-----~~~~~iv------~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~ 159 (572)
+|..|+.+|..++.. + .++..+. ..+.-+.|+..+-. |..+.+|..|+.+|..|-.+...+-..
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~----Dp~~kvR~aA~~~l~~lL~gsk~~L~~ 77 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILK----DPSPKVRAAAASALAALLEGSKPFLAQ 77 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHc----CCchhHHHHHHHHHHHHHHccHHHHHH
Confidence 455666666666654 2 1233333 23345566665543 245788888999988886543211100
Q ss_pred ccCCCcc--ccc----h-hhhH----HHHHHHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCCh----HHHH
Q 008257 160 TVGPDNQ--TLV----S-EDIV----HNLLHLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGAT----ISLV 223 (572)
Q Consensus 160 ~~~~~~~--~l~----~-~~~i----~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i----~~Lv 223 (572)
.-+.++. -+. . ...| ..|+..|.. .++.+..+.+++|..+.+..... .. +.|-+ ..+-
T Consensus 78 Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~-rL-----~~~ll~~~v~~v~ 151 (182)
T PF13251_consen 78 AEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYH-RL-----PPGLLTEVVTQVR 151 (182)
T ss_pred HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChh-hc-----CHhHHHHHHHHHH
Confidence 0000100 000 0 1111 234444443 46677788899998888765431 11 23444 4455
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCC
Q 008257 224 QFVEAPQNDLRLASIELIQNLSP 246 (572)
Q Consensus 224 ~lL~~~~~~v~~~a~~~L~~Ls~ 246 (572)
.++.+.|.+++..++.++..+..
T Consensus 152 ~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 152 PLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHc
Confidence 56778888999999888887764
No 265
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=40.58 E-value=32 Score=20.38 Aligned_cols=26 Identities=12% Similarity=0.307 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHh
Q 008257 138 LKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS 182 (572)
Q Consensus 138 ~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~ 182 (572)
+|..|+++|+.+.. +.+++.|++.|+
T Consensus 1 VR~~Aa~aLg~igd-------------------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD-------------------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S-------------------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-------------------HHHHHHHHHHhc
Confidence 47788888887732 457888888764
No 266
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=39.47 E-value=33 Score=29.91 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=50.7
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChH--HHHHHHHHHhc
Q 008257 218 ATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISK--EQAAAVGLLAE 289 (572)
Q Consensus 218 ~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~--~~~~A~~~L~~ 289 (572)
++..|-+-|.++++.++..|+.+|..+..+.+..+...+... ..+..|++++.+...... ++..+...|..
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~-~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~ 115 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASK-EFLDELVKLIKSKKTDPETPVKEKILELLQE 115 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH-HHHHHHHHHHHHTTTHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHH-HHHHHHHHHHccCCCCchhHHHHHHHHHHHH
Confidence 455666778889999999999999999887666766666655 678888888876654112 56655555533
No 267
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=38.96 E-value=60 Score=32.31 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=47.9
Q ss_pred hccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc-----------cchhhHHHHHhcCChHHHHHHHhh
Q 008257 441 EGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV-----------DIEQGVMVLCEAQGIKPILDVLLE 499 (572)
Q Consensus 441 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~-----------~~~~~~~~i~~~g~i~~L~~lL~~ 499 (572)
+...|..+++-|.+++...+..|+++|.-++.... ..+.++..+.++||+++++++|+.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45678889999999999999999999999985422 135567889999999999999953
No 268
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=38.73 E-value=69 Score=31.89 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=48.0
Q ss_pred cchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCc-----------cHHHHHHHHhcCChHHHHHHhcCC
Q 008257 168 LVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTT-----------VLSVVSAIKSSGATISLVQFVEAP 229 (572)
Q Consensus 168 l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~-----------~~~~~~~i~~~g~i~~Lv~lL~~~ 229 (572)
......|..+++-|..++...+..++++|+.++.+.-+ ...+...+.+.||++.|+.+|+..
T Consensus 56 ~~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~~ 128 (293)
T PF07923_consen 56 DQRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKMF 128 (293)
T ss_pred hhHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34567888999999988999999999999998876311 134455677899999999998643
No 269
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.18 E-value=2.9e+02 Score=27.59 Aligned_cols=136 Identities=18% Similarity=0.192 Sum_probs=85.5
Q ss_pred cHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHc
Q 008257 38 LQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHA 116 (572)
Q Consensus 38 i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~ 116 (572)
+...++.|.+.+.+.++.+...+.+|+. +.+.....-..-+..+++-+++....+-..|+.++..+.+.-.+. |.+
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~--i~~- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS--IDQ- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH--HHH-
Confidence 3445667788888999999988888876 444433333344577788888777778888999998888653332 222
Q ss_pred CChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHH
Q 008257 117 GILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLL 193 (572)
Q Consensus 117 G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~ 193 (572)
.+..++..|.-... ....-+++.|-.+|-.++.+-. -..+++.|+..+....+.++..+.
T Consensus 167 -~ld~lv~~Ll~ka~-~dnrFvreda~kAL~aMV~~vt---------------p~~~L~~L~~~~~~~n~r~r~~a~ 226 (334)
T KOG2933|consen 167 -ELDDLVTQLLHKAS-QDNRFVREDAEKALVAMVNHVT---------------PQKLLRKLIPILQHSNPRVRAKAA 226 (334)
T ss_pred -HHHHHHHHHHhhhc-ccchHHHHHHHHHHHHHHhccC---------------hHHHHHHHHHHHhhhchhhhhhhh
Confidence 44455554432221 1235678888889988876421 123455566556666666655444
No 270
>PRK14707 hypothetical protein; Provisional
Probab=36.52 E-value=1.1e+03 Score=30.65 Aligned_cols=76 Identities=14% Similarity=0.048 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHH-hccCcchhHHHHhhhHHHHHHhccc--CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHh
Q 008257 51 ETKLSLAAFLGD-LALNSDVKVLVARTVGSCLINIMKS--GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLF 127 (572)
Q Consensus 51 ~~~~~aa~~L~~-l~~~~~~k~~i~~~g~~~Lv~lL~s--~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~ 127 (572)
.+=..|+..|.. |..+.+.++.+...++...++-|+. ++..+...|...-..|..+++-++.+ +.-+|...++-|+
T Consensus 305 ~vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l-~~q~~a~~lNals 383 (2710)
T PRK14707 305 PVCAEAAIALAERLADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDL-EPQGVSSVLNALS 383 (2710)
T ss_pred hHHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhccc-chhHHHHHHhhhh
Confidence 333445555544 5555555555555566555555543 44555666665555666555555444 4555666666665
No 271
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=35.62 E-value=52 Score=34.77 Aligned_cols=67 Identities=21% Similarity=0.282 Sum_probs=46.4
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHH-HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHH
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI-HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVV 150 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv-~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla 150 (572)
..|=.+.-..++++|+.|..++.+++-+.+|+...+ ....-..+++++-.+. +.+-+.++.++..+-
T Consensus 331 ~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~-----~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 331 KALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPE-----PRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccc-----cccchhhhHHHHHhh
Confidence 333334446889999999999999999988876554 4555566777775532 455566666666654
No 272
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=35.35 E-value=4.5e+02 Score=29.16 Aligned_cols=120 Identities=16% Similarity=0.165 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHHHhhccCcchHHHHHHc--CCcHHHHHHHccCCHHHHHHHHHHHHHhcc--CcchhHHHHhhhH-HHH
Q 008257 7 ENLLTVEKAEKTLANLEKCENNVRQMAEN--GRLQPLLTQILEGPQETKLSLAAFLGDLAL--NSDVKVLVARTVG-SCL 81 (572)
Q Consensus 7 ~~~~~~~~A~~~L~~L~~~~~n~~~i~~~--g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~--~~~~k~~i~~~g~-~~L 81 (572)
.++.-+..+++.|.|+..++.++..+... -.+.+++..=...+..+++..+....|++. ...+-+ .++ +.|
T Consensus 600 ~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l 675 (745)
T KOG0301|consen 600 ADPANQLLVVRCLANLFSNPAGRELFMSRLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVL 675 (745)
T ss_pred cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHH
Confidence 45667788999999999998887776644 222333322222335566655555545432 222111 222 444
Q ss_pred HHhc----cc-CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccC
Q 008257 82 INIM----KS-GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVG 130 (572)
Q Consensus 82 v~lL----~s-~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~ 130 (572)
...+ .. ++.+..-..+.||.+|+..+.....+...=.|..++.-+++..
T Consensus 676 ~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~~ 729 (745)
T KOG0301|consen 676 LSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLKEAV 729 (745)
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHHHhc
Confidence 3333 32 3335566788899999999888888888888888888887653
No 273
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=35.15 E-value=28 Score=30.55 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=22.6
Q ss_pred cchHHHHHhhcCCCHhHHHHHHHHHHHhhh
Q 008257 443 HAVEKLIALLDHTNEKVVEASLAALSTVID 472 (572)
Q Consensus 443 g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~ 472 (572)
.-|+|||++|.+.++.+...|+.+|.+-..
T Consensus 94 YNV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 94 YNVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp TTHHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred CcHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 468999999999999999999999997553
No 274
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=35.03 E-value=73 Score=35.43 Aligned_cols=178 Identities=16% Similarity=0.171 Sum_probs=95.8
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCC--CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCC
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCE--PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDF 156 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~--~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~ 156 (572)
..+.+++.++... ...|...|..|.... ++.+ .+..+..++.+... ...+.++..|.-+++.++......
T Consensus 398 ~~i~~~I~~~~~~-~~ea~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~-~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 398 KFIKDLIKSKKLT-DDEAAQLLASLPFHVRRPTEE------LLKELFELAKSPKV-KNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHTT-S--HHHHHHHHHHHHHT-----HH------HHHHHHHHHT-HHH-HT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCC-HHHHHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccc-cCChhHHHHHHHHHHHHhCceeec
Confidence 4556666664332 233556666665432 2222 23444555543210 012567777777777776421100
Q ss_pred C---ccccCCCccccchhhhHHHHHHHHh----cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC
Q 008257 157 D---SITVGPDNQTLVSEDIVHNLLHLIS----NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP 229 (572)
Q Consensus 157 ~---~~~~~~~~~~l~~~~~i~~Lv~lL~----~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~ 229 (572)
. ... + ....-..+..++.|...+. ..+.+-+.-++++|.|+... ..++.|..++.+.
T Consensus 470 ~~~~~~~-~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~--------------~~i~~l~~~i~~~ 533 (618)
T PF01347_consen 470 SDSAEFC-D-PCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP--------------ESIPVLLPYIEGK 533 (618)
T ss_dssp -------------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G--------------GGHHHHHTTSTTS
T ss_pred ccccccc-c-ccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc--------------hhhHHHHhHhhhc
Confidence 0 000 0 0011233456777777776 34556777888998887532 3677888888776
Q ss_pred ---CHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcC
Q 008257 230 ---QNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAEL 290 (572)
Q Consensus 230 ---~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L 290 (572)
...+|..|+++|+.++...++.+ .+.|+.++.+...-.++|.+|..+|-..
T Consensus 534 ~~~~~~~R~~Ai~Alr~~~~~~~~~v----------~~~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 534 EEVPHFIRVAAIQALRRLAKHCPEKV----------REILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp S-S-HHHHHHHHHTTTTGGGT-HHHH----------HHHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHHhhcCcHHH----------HHHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 46899999999998865543332 2466667766554358999988877664
No 275
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=34.97 E-value=1.6e+02 Score=24.35 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHh----c--CCCHHHHHHHHHHHHHc
Q 008257 171 EDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFV----E--APQNDLRLASIELIQNL 244 (572)
Q Consensus 171 ~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL----~--~~~~~v~~~a~~~L~~L 244 (572)
..++..|.+-|.+.++.++..++..|-.+..+.. +.+...+.....+..++.+. . ..+..+|..+..++...
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g--~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCG--ERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc--HHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 3466777777778899999999999999988765 35666666665555554431 1 11356777776666543
No 276
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=34.70 E-value=67 Score=34.04 Aligned_cols=68 Identities=21% Similarity=0.245 Sum_probs=56.3
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257 493 ILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK 560 (572)
Q Consensus 493 L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~ 560 (572)
+++.+..+.++++++.|..++.++.-+.++|.....+..+...+++++..+.+++-+.++.||+-+.+
T Consensus 332 ~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 332 ALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 33444468899999999999999998877777766666666689999999999999999999998875
No 277
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=34.51 E-value=5.6e+02 Score=26.78 Aligned_cols=79 Identities=14% Similarity=0.027 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhccCc-chhHHHHhhhH-HHHHHhcccCC-----HHHHHHHHHHHHHhhcCC-CcH-HHHHHcCChHH
Q 008257 51 ETKLSLAAFLGDLALNS-DVKVLVARTVG-SCLINIMKSGN-----MQAREAALKALNQISSCE-PSA-KVLIHAGILPP 121 (572)
Q Consensus 51 ~~~~~aa~~L~~l~~~~-~~k~~i~~~g~-~~Lv~lL~s~~-----~~~~~~A~~aL~~Ls~~~-~~~-~~iv~~G~i~~ 121 (572)
.+-.++..+|.|+..++ ..+....+.-. ..+.+.+.+.. .+.+..=++.|.-|+.-. +.| +.+++.+|++.
T Consensus 112 ~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~ 191 (532)
T KOG4464|consen 112 HVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLEL 191 (532)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHH
Confidence 55678999999998744 55555555433 44444443321 245666677777777643 334 45669999999
Q ss_pred HHHHHhcc
Q 008257 122 LVKDLFTV 129 (572)
Q Consensus 122 Lv~lL~s~ 129 (572)
+.+.|...
T Consensus 192 lt~~led~ 199 (532)
T KOG4464|consen 192 LTNWLEDK 199 (532)
T ss_pred HHHHhhcc
Confidence 99999754
No 278
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=34.18 E-value=91 Score=34.47 Aligned_cols=180 Identities=12% Similarity=0.082 Sum_probs=96.6
Q ss_pred CCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHH
Q 008257 36 GRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVL 113 (572)
Q Consensus 36 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~i 113 (572)
+.++.|+++++..+..+|.. .|..+-. -+.-...+.+.-+ |.+..-+...++..++.+++++..|+..-..+.
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~---LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~-- 404 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLL---LLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRN-- 404 (690)
T ss_pred chhhhHHHHhcCcchHHHHH---HHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhh--
Confidence 46777777877777666654 2333322 2222334444555 888888888888888888888888875321110
Q ss_pred HHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhh-hHHHHHHHHhcCChhHHHHH
Q 008257 114 IHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSED-IVHNLLHLISNTGPTIECKL 192 (572)
Q Consensus 114 v~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~-~i~~Lv~lL~~~~~~~q~~a 192 (572)
... -|++.|...-. |....++-+..-+|+.++.+.. ..+..+ .+..+.+-++++-...+...
T Consensus 405 Ln~----Ellr~~ar~q~-d~~~~irtntticlgki~~~l~------------~~~R~~vL~~aftralkdpf~paR~a~ 467 (690)
T KOG1243|consen 405 LNG----ELLRYLARLQP-DEHGGIRTNTTICLGKIAPHLA------------ASVRKRVLASAFTRALKDPFVPARKAG 467 (690)
T ss_pred hcH----HHHHHHHhhCc-cccCcccccceeeecccccccc------------hhhhccccchhhhhhhcCCCCCchhhh
Confidence 011 12222322110 1224555555555555543211 011111 23334444555555667777
Q ss_pred HHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHH
Q 008257 193 LQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQN 243 (572)
Q Consensus 193 ~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~ 243 (572)
+.+++........ .++ ....+|.++.+.-+++..+|..|..++..
T Consensus 468 v~~l~at~~~~~~-~~v-----a~kIlp~l~pl~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 468 VLALAATQEYFDQ-SEV-----ANKILPSLVPLTVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred hHHHhhcccccch-hhh-----hhhccccccccccCcccchhhHHHHHHHH
Confidence 7777766664432 112 24467777777777777777777666543
No 279
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=33.42 E-value=5.5e+02 Score=29.32 Aligned_cols=144 Identities=15% Similarity=0.142 Sum_probs=83.2
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChh
Q 008257 172 DIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHE 251 (572)
Q Consensus 172 ~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~ 251 (572)
..-..+...+.++++..-...+.++..++.-..- ..+. +....++-..-.+..-..++....++|..++...++.
T Consensus 441 ~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~--~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~ 515 (727)
T PF12726_consen 441 NLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKF--PPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSH 515 (727)
T ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhcccccc--CCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 3444455555566666666666666666543210 0000 1112222222222223456677788899999876666
Q ss_pred HHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhH
Q 008257 252 LADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPF 331 (572)
Q Consensus 252 ~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~ 331 (572)
+.+.+.+. ++...++.++-++++ ++..+|..+|..... ..|-.+.+-.+++.. -...
T Consensus 516 L~~l~~d~-~~~~~i~s~lfsp~~--~l~qaA~~llk~~~d----------~~~R~e~i~~ll~~~----------~~~t 572 (727)
T PF12726_consen 516 LKELLSDP-DAAQAIWSLLFSPDD--DLYQAAQDLLKQAFD----------VDGRLEAIQALLQSN----------FSPT 572 (727)
T ss_pred HHHHHcCc-chhhHHHhheeCCCh--HHHHHHHHHHHHHhc----------CCcHHHHHHHHHHHh----------HHHH
Confidence 65555544 889999999999996 899999888866543 234445555566541 2223
Q ss_pred HHHHHHHHHHHh
Q 008257 332 LEGLLSVLARVT 343 (572)
Q Consensus 332 ~e~a~~aL~~l~ 343 (572)
..+...+|.+++
T Consensus 573 L~ai~~~l~~~~ 584 (727)
T PF12726_consen 573 LSAINWSLRQLT 584 (727)
T ss_pred HHHHHHHHHHHH
Confidence 455555666655
No 280
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=33.41 E-value=6.2e+02 Score=26.94 Aligned_cols=144 Identities=11% Similarity=0.172 Sum_probs=82.6
Q ss_pred HHHHHhccc-CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCC
Q 008257 79 SCLINIMKS-GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFD 157 (572)
Q Consensus 79 ~~Lv~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~ 157 (572)
-.+++.|+. .+...+..|++.|..++.+.+.+ +.+ -.--...++|.... |..+..++..+-.++..++++.+
T Consensus 332 ~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~--l~D-stE~ai~K~Leaa~-ds~~~v~~~Aeed~~~~las~~P--- 404 (516)
T KOG2956|consen 332 LLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR--LFD-STEIAICKVLEAAK-DSQDEVMRVAEEDCLTTLASHLP--- 404 (516)
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHhchHh--hhc-hHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHhhCc---
Confidence 566777775 66777899999999999865433 111 11112233443321 11223344444444555555543
Q ss_pred ccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHH
Q 008257 158 SITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLAS 237 (572)
Q Consensus 158 ~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a 237 (572)
.-+|..+..++-+.+.+.-.-+++.+-.+...-.. ++.-..+ ....|.+++-.++....||..|
T Consensus 405 -------------~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~-EeL~~ll--~diaP~~iqay~S~SS~VRKta 468 (516)
T KOG2956|consen 405 -------------LQCIVNISPLILTADEPRAVAVIKMLTKLFERLSA-EELLNLL--PDIAPCVIQAYDSTSSTVRKTA 468 (516)
T ss_pred -------------hhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCH-HHHHHhh--hhhhhHHHHHhcCchHHhhhhH
Confidence 12466666666666666555566555555543221 2222221 3567888888888888899998
Q ss_pred HHHHHHcC
Q 008257 238 IELIQNLS 245 (572)
Q Consensus 238 ~~~L~~Ls 245 (572)
+..|-.+-
T Consensus 469 VfCLVamv 476 (516)
T KOG2956|consen 469 VFCLVAMV 476 (516)
T ss_pred HHhHHHHH
Confidence 88776654
No 281
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=32.85 E-value=1.1e+02 Score=25.64 Aligned_cols=39 Identities=15% Similarity=0.098 Sum_probs=31.4
Q ss_pred hHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 008257 77 VGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIH 115 (572)
Q Consensus 77 g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~ 115 (572)
|++.||.-|...++++...|+.+|...+.++.+-+.++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 559999999988899999999999998887755555544
No 282
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=31.73 E-value=70 Score=19.13 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhc
Q 008257 137 RLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN 183 (572)
Q Consensus 137 ~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~ 183 (572)
.+|..|+++|+++.. +.+++.|++.+.+
T Consensus 2 ~vR~~aa~aLg~~~~-------------------~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD-------------------EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC-------------------HhHHHHHHHHhcC
Confidence 368899999998832 2357777777653
No 283
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=31.61 E-value=2e+02 Score=26.45 Aligned_cols=67 Identities=18% Similarity=0.268 Sum_probs=50.3
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 008257 173 IVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH 247 (572)
Q Consensus 173 ~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~ 247 (572)
.++.++++..+++..++..|+..+..+-...=..+ ...+|.|+.|..++++.++..|...+..+...
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP--------~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP--------KQCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh--------HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 56777888788899999999887765543210000 12589999999999999999999999998744
No 284
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=31.54 E-value=1.1e+02 Score=33.81 Aligned_cols=156 Identities=12% Similarity=0.112 Sum_probs=96.2
Q ss_pred HHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccch
Q 008257 357 CEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKET 436 (572)
Q Consensus 357 ~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 436 (572)
.+.+++|.|++|...+ +..+|..-..-+..+... ++
T Consensus 327 yq~~i~p~l~kLF~~~-Dr~iR~~LL~~i~~~i~~---Lt---------------------------------------- 362 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSP-DRQIRLLLLQYIEKYIDH---LT---------------------------------------- 362 (690)
T ss_pred cccchhhhHHHHhcCc-chHHHHHHHHhHHHHhhh---cC----------------------------------------
Confidence 4567899999999998 877776655544443321 11
Q ss_pred hhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 008257 437 FCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERI 516 (572)
Q Consensus 437 ~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l 516 (572)
..+++.-..|.+..-+.++++-+++..+..+..|+.-= +.. ...-.-.+.+-. ++...+..++.+...++.+|
T Consensus 363 ~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL-----~~~-~Ln~Ellr~~ar-~q~d~~~~irtntticlgki 435 (690)
T KOG1243|consen 363 KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKL-----SKR-NLNGELLRYLAR-LQPDEHGGIRTNTTICLGKI 435 (690)
T ss_pred HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhh-----chh-hhcHHHHHHHHh-hCccccCcccccceeeeccc
Confidence 01345667888888899999999999999988887421 011 111111122322 32344566888888888888
Q ss_pred HcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcccCCCCC
Q 008257 517 LRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIPNFSG 566 (572)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~s~ 566 (572)
..+..... ..+-++.+...-++++-.-.|..+.++|+-...+.++++
T Consensus 436 ~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~ 482 (690)
T KOG1243|consen 436 APHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSE 482 (690)
T ss_pred ccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhh
Confidence 75522111 122222455666777777788888888887776665554
No 285
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=31.51 E-value=2.4e+02 Score=22.90 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=48.3
Q ss_pred hhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHH
Q 008257 170 SEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELI 241 (572)
Q Consensus 170 ~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L 241 (572)
....+..|++-.+.+++..+..++..|..+...+.+ ...+.+-|+...|-++=..-++..+...-.++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a----~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA----AQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH----HHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 456677777777778888899999999999988754 45666788888876665445555555444443
No 286
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=30.32 E-value=2e+02 Score=25.65 Aligned_cols=111 Identities=11% Similarity=0.145 Sum_probs=61.4
Q ss_pred hHHHHHhhcC-CCHhHHHHHHHHHHHhhh-cCccchh-----------------------------hHHHHHhcCChHHH
Q 008257 445 VEKLIALLDH-TNEKVVEASLAALSTVID-DGVDIEQ-----------------------------GVMVLCEAQGIKPI 493 (572)
Q Consensus 445 i~~Lv~lL~~-~~~~v~~~A~~aL~~l~~-~~~~~~~-----------------------------~~~~i~~~g~i~~L 493 (572)
++.|.++|++ .+..++.++++.|+.|-. |+..++. ..+...-.-++..|
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~vvi~~L 91 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTVVINAL 91 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHHHHHHH
Confidence 4566777754 468899999999998853 2211110 01111122344566
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHcc--hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhh
Q 008257 494 LDVLLEKRTENLQRRAVWVVERILRT--DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHI 558 (572)
Q Consensus 494 ~~lL~~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L 558 (572)
+..|++..-......++.++-++++. ..+...+. .+.+.+++.+++.+...++.--.-|..|
T Consensus 92 ~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~---~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 92 MRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP---QVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH---HHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 66675333344555667777777744 23322222 2445888888877776666544444444
No 287
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=29.92 E-value=2.5e+02 Score=30.16 Aligned_cols=71 Identities=18% Similarity=0.372 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC-CHHHHHHHHHHHHHcC
Q 008257 171 EDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP-QNDLRLASIELIQNLS 245 (572)
Q Consensus 171 ~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~~L~~Ls 245 (572)
+++|+.+++.+.. +.+-.-.++.+. +..+.....+..-+.+.+.|+.|+.+|... +.+++.+|+..|..+.
T Consensus 20 ~~~v~~llkHI~~--~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII 91 (475)
T PF04499_consen 20 PNFVDNLLKHIDT--PAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAII 91 (475)
T ss_pred ccHHHHHHHhcCC--cHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 3456666666542 333333333333 222233345666677899999999999743 4689999998877764
No 288
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=29.80 E-value=1.1e+02 Score=31.02 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHcC--ChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC
Q 008257 93 REAALKALNQISSCEPSAKVLIHAG--ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG 153 (572)
Q Consensus 93 ~~~A~~aL~~Ls~~~~~~~~iv~~G--~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~ 153 (572)
|..|+.+|..+..+......+...+ .+.-|+++++... ..+..+|..|..+|.-|+...
T Consensus 239 RllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~--~v~~~i~~~Al~~L~ai~~~~ 299 (329)
T PF06012_consen 239 RLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEE--KVPMDIQTAALRALEAISHKR 299 (329)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHhcc
Confidence 4455555555555555567777666 9999999998653 677899999999999998754
No 289
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.18 E-value=4.7e+02 Score=27.92 Aligned_cols=137 Identities=13% Similarity=0.126 Sum_probs=75.4
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCcc
Q 008257 87 SGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQ 166 (572)
Q Consensus 87 s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~ 166 (572)
+++...+..|++.|.|+++..+.+..-...-.+..++.=|... ...+++-.|..+|.-+.....++.-.
T Consensus 269 dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~----~~~~V~leam~~Lt~v~~~~~~~~l~------- 337 (533)
T KOG2032|consen 269 DPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDD----LNEEVQLEAMKCLTMVLEKASNDDLE------- 337 (533)
T ss_pred CchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHHHhhhhcchh-------
Confidence 4556778999999999998744332212222344455544432 23677888888888776533322200
Q ss_pred ccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHh--cCChHHHHHHhcCCCHHHHHHH
Q 008257 167 TLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKS--SGATISLVQFVEAPQNDLRLAS 237 (572)
Q Consensus 167 ~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~a 237 (572)
-.--++.-.+..++.+.+++++..+...+..|+..... ..+..+.+ .+...+|+-.+..+++.+-..+
T Consensus 338 -~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~--~~e~~Fte~v~k~~~~lllhl~d~~p~va~AC 407 (533)
T KOG2032|consen 338 -SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGG--GWEEFFTEQVKKRLAPLLLHLQDPNPYVARAC 407 (533)
T ss_pred -hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCC--CchhhhHHHHHhccccceeeeCCCChHHHHHH
Confidence 00112344566677788999998887766655543221 11222221 2334455556677777654443
No 290
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=27.82 E-value=1.8e+02 Score=24.90 Aligned_cols=60 Identities=25% Similarity=0.285 Sum_probs=44.0
Q ss_pred HHHHHhcccCC----HHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHH
Q 008257 79 SCLINIMKSGN----MQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATIL 146 (572)
Q Consensus 79 ~~Lv~lL~s~~----~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L 146 (572)
..+.+.|.... .+....+++++..... .-....+.+...++.+.++|.+ +.++..|+.+|
T Consensus 85 ~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~-~~~~~~i~~~~~l~~~~~~l~~-------~~~~~~A~~cl 148 (148)
T PF08389_consen 85 EILSQILSQSSSEANEELVKAALKCLKSWIS-WIPIELIINSNLLNLIFQLLQS-------PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT-TS-HHHHHSSSHHHHHHHHTTS-------CCCHHHHHHHH
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHH-hCCHHHhccHHHHHHHHHHcCC-------HHHHHHHHHhC
Confidence 44555555433 6778999999999877 4446677788899999999954 46688888775
No 291
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=27.23 E-value=3.9e+02 Score=22.71 Aligned_cols=69 Identities=13% Similarity=0.201 Sum_probs=45.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHcc--hhhhhhhcCCCCchHHHHHHhh-----cCC---chhHHHHHHHHHhhcc
Q 008257 491 KPILDVLLEKRTENLQRRAVWVVERILRT--DDIAYEVSGDPNVSTALVDAFQ-----HAD---YRTRQIAERALKHIDK 560 (572)
Q Consensus 491 ~~L~~lL~~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~~~~~~Lv~ll~-----~~~---~~~~~~Aa~aL~~L~~ 560 (572)
..|..-|+ +.++.+|.+++.+|..++.. ++.+..+.....+++.+.+.-. .|+ ..||..|..++..|.-
T Consensus 41 d~L~kRL~-~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 41 EYLLKRLK-RSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HHHHHHhc-CCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 56777784 77888999999999888844 5666666654333333333322 222 3788888888887764
No 292
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=26.61 E-value=2.6e+02 Score=24.35 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=54.0
Q ss_pred hhhHHHHHHHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHH-HHHHhcCC---CHHHHHHHHHHHHHcC
Q 008257 171 EDIVHNLLHLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATIS-LVQFVEAP---QNDLRLASIELIQNLS 245 (572)
Q Consensus 171 ~~~i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~-Lv~lL~~~---~~~v~~~a~~~L~~Ls 245 (572)
..++..|-+-|.+ .++.++..|+..|-.+..+.. ..+...|...+.+.. |+.++... +..|+...+.++...+
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG--~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCG--HRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcc--HHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 3456666665653 578888999888888877764 367788888888886 99999632 3478888888887766
No 293
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=25.53 E-value=2.1e+02 Score=24.94 Aligned_cols=59 Identities=17% Similarity=0.088 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHHhhccC--cchHHHHHHcCCcHH-HHHHHcc---CCHHHHHHHHHHHHHhc
Q 008257 6 SENLLTVEKAEKTLANLEKC--ENNVRQMAENGRLQP-LLTQILE---GPQETKLSLAAFLGDLA 64 (572)
Q Consensus 6 s~~~~~~~~A~~~L~~L~~~--~~n~~~i~~~g~i~~-Lv~~L~~---~~~~~~~~aa~~L~~l~ 64 (572)
+.++.++..|+.+|-.+.+| .....++++..+++. |++++.. .+..+|......+...+
T Consensus 50 ~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 50 NKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 46888888888888888873 456788888888887 8888862 34577877777776544
No 294
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=25.02 E-value=4.3e+02 Score=22.41 Aligned_cols=107 Identities=18% Similarity=0.209 Sum_probs=59.9
Q ss_pred chHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccc----------hhhHHHHHhc--CChHHHHHHHhhcCC---HHHHHH
Q 008257 444 AVEKLIALLDHTNEKVVEASLAALSTVIDDGVDI----------EQGVMVLCEA--QGIKPILDVLLEKRT---ENLQRR 508 (572)
Q Consensus 444 ~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~----------~~~~~~i~~~--g~i~~L~~lL~~~~~---~~~~~~ 508 (572)
.++-+++++.+ ++......+..|..+..+-.++ ......+.+. .-+..+.+++....+ +.+...
T Consensus 27 ~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~ 105 (148)
T PF08389_consen 27 FLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELVKA 105 (148)
T ss_dssp HHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHH
T ss_pred HHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 56677777776 4666666777666665331110 0001122222 122334455532333 778888
Q ss_pred HHHHHHHHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHH
Q 008257 509 AVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERAL 555 (572)
Q Consensus 509 a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL 555 (572)
+..++..++.+-....-+. . .+...+.+++. ++..+..|+.+|
T Consensus 106 ~L~~l~s~i~~~~~~~i~~-~-~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 106 ALKCLKSWISWIPIELIIN-S-NLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHTTTS-HHHHHS-S-SHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHhcc-H-HHHHHHHHHcC--CHHHHHHHHHhC
Confidence 9999999887644333333 2 35457888884 445578888775
No 295
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.80 E-value=1.7e+02 Score=31.13 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=56.6
Q ss_pred cchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhc-CCHHHHHHHHHHHHHHH
Q 008257 443 HAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEK-RTENLQRRAVWVVERIL 517 (572)
Q Consensus 443 g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~~~~~~a~~~l~~l~ 517 (572)
.+|..|-+-|.+.++.++..|+..|-.++.+=.. .....|.+.+-+.-+|.+.+.+ .+..+|++++.+|...-
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~--~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGY--SFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 3778888889998899999999999988865211 1223577777777788888777 68889999999997664
No 296
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=23.72 E-value=3.8e+02 Score=27.16 Aligned_cols=72 Identities=26% Similarity=0.335 Sum_probs=45.1
Q ss_pred HHHHHHHHHhccCcchhHHHHhh--hH-HHHHHhcccCC---HHHHHHHHHHHHHhhcCCCcHHHHH-------HcCChH
Q 008257 54 LSLAAFLGDLALNSDVKVLVART--VG-SCLINIMKSGN---MQAREAALKALNQISSCEPSAKVLI-------HAGILP 120 (572)
Q Consensus 54 ~~aa~~L~~l~~~~~~k~~i~~~--g~-~~Lv~lL~s~~---~~~~~~A~~aL~~Ls~~~~~~~~iv-------~~G~i~ 120 (572)
..|...|..+..+...-..+... .. ..|+++++.++ .++|..|+.+|..|+.+......++ ..|.++
T Consensus 240 llAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~ 319 (329)
T PF06012_consen 240 LLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILP 319 (329)
T ss_pred HHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHH
Confidence 33444444333344444455444 36 89999998754 4789999999999998655443433 346666
Q ss_pred HHHHH
Q 008257 121 PLVKD 125 (572)
Q Consensus 121 ~Lv~l 125 (572)
.+++-
T Consensus 320 ~llR~ 324 (329)
T PF06012_consen 320 QLLRK 324 (329)
T ss_pred HHHHH
Confidence 66653
No 297
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=23.72 E-value=1.6e+02 Score=28.78 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=51.8
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG 153 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~ 153 (572)
-.|+.+|..+.+..|...+.+|..+-..-+.+.. ..+..|.||.++|.. +.-.+|..+|-++...+
T Consensus 191 ~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t--------~~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 191 TFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQT--------DLWMEALEVLDEIVTRS 256 (262)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCC--------ccHHHHHHHHHHHHhhc
Confidence 3578889888899999999999999976554433 566689999999974 45678889888876543
No 298
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=23.07 E-value=7.9e+02 Score=24.79 Aligned_cols=221 Identities=21% Similarity=0.208 Sum_probs=104.5
Q ss_pred HHHHHhhccCcchHHHHHHcCCcHHHHHHHc-cCCHHHHHHHHHHHHHhcc-C-cchhHHHHhhhHHHHHHhcccCCHHH
Q 008257 16 EKTLANLEKCENNVRQMAENGRLQPLLTQIL-EGPQETKLSLAAFLGDLAL-N-SDVKVLVARTVGSCLINIMKSGNMQA 92 (572)
Q Consensus 16 ~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~~-~-~~~k~~i~~~g~~~Lv~lL~s~~~~~ 92 (572)
..+|..+.. .. .....++.|..++. ++++.....+..++..-.. - .+.- +.....+.+-|+...+.+
T Consensus 8 ~~~L~~l~~-~~-----~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~----~~~~~~~~kGl~~kk~~v 77 (339)
T PF12074_consen 8 ASMLSSLPS-SS-----LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELP----KKVVDAFKKGLKDKKPPV 77 (339)
T ss_pred HHHHHhCCC-cc-----hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCC----HHHHHHHHHHhcCCCCcH
Confidence 456666665 22 33334556666554 5777777777777664222 1 1111 111255555566555557
Q ss_pred HHHHHHHHHHhhcCCCcHHHH-HHcCChHHHHHHHhccCCCCCCcchH---HHHHHHHHHHHhcCCC--------CCccc
Q 008257 93 REAALKALNQISSCEPSAKVL-IHAGILPPLVKDLFTVGSNHLPMRLK---EVSATILANVVNSGHD--------FDSIT 160 (572)
Q Consensus 93 ~~~A~~aL~~Ls~~~~~~~~i-v~~G~i~~Lv~lL~s~~~~~~~~~~~---~~aa~~L~nla~~~~~--------~~~~~ 160 (572)
|+.=+.+++.......|.... .-...+|.|++.++....+ +.+..+ -.++.++..+.....+ .....
T Consensus 78 R~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~-p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~ 156 (339)
T PF12074_consen 78 RRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASAN-PLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLA 156 (339)
T ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhC-CCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhc
Confidence 777666666665533332222 2345889999988643211 111111 1122222221110000 00001
Q ss_pred cCCCccccchhhhHHHHHHHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC--CHHHHHHH
Q 008257 161 VGPDNQTLVSEDIVHNLLHLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP--QNDLRLAS 237 (572)
Q Consensus 161 ~~~~~~~l~~~~~i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a 237 (572)
.+.+...+..+ ++... .+++-..-.+++|..+..+... ...... ...--..++.++-+. ..++|+.|
T Consensus 157 ~~~kps~ll~~-------kvyskl~~~~d~~w~~~al~~~~~~~~~--~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A 226 (339)
T PF12074_consen 157 LDPKPSFLLSE-------KVYSKLASEEDLCWLLRALEALLSDHPS--ELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAA 226 (339)
T ss_pred cCCCcchhcCH-------HHHhccCCHhHHHHHHHHHHHHHhcchh--hhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 11111112222 12222 3444455566666666544221 011000 112345677777777 68999999
Q ss_pred HHHHHHcCCCCChhHHHHHh
Q 008257 238 IELIQNLSPHMGHELADALR 257 (572)
Q Consensus 238 ~~~L~~Ls~~~~~~~~~~i~ 257 (572)
..++..+....+..+.+.+.
T Consensus 227 ~~~l~~l~~~~~~~l~~~li 246 (339)
T PF12074_consen 227 LSALKKLYASNPELLSKSLI 246 (339)
T ss_pred HHHHHHHHHhChHHHHHHHH
Confidence 99999887654443443443
No 299
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=22.92 E-value=8.5e+02 Score=25.14 Aligned_cols=92 Identities=16% Similarity=0.126 Sum_probs=55.9
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCc-------------HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC
Q 008257 87 SGNMQAREAALKALNQISSCEPS-------------AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG 153 (572)
Q Consensus 87 s~~~~~~~~A~~aL~~Ls~~~~~-------------~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~ 153 (572)
+.+...+..|+..+..|+..... .......-++|-|- ... +..+-+|..|.+.+...-..=
T Consensus 266 ~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~---~~~---~~~piLka~aik~~~~Fr~~l 339 (370)
T PF08506_consen 266 SNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ---PDV---NSHPILKADAIKFLYTFRNQL 339 (370)
T ss_dssp TT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH----SS----S-HHHHHHHHHHHHHHGGGS
T ss_pred cccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc---ccC---CCCcchHHHHHHHHHHHHhhC
Confidence 35667889999999999975432 12223344444443 111 233678888888887765421
Q ss_pred CCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHH
Q 008257 154 HDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVL 196 (572)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL 196 (572)
+ .=.-.+++|.++.+|.+++.-+...|+.++
T Consensus 340 ~------------~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 340 P------------KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -------------HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred C------------HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 0 012346899999999999988888887664
No 300
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=22.89 E-value=2.5e+02 Score=30.14 Aligned_cols=43 Identities=26% Similarity=0.257 Sum_probs=34.4
Q ss_pred HHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhcc
Q 008257 351 DAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESK 393 (572)
Q Consensus 351 ~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~ 393 (572)
+..+-+.+.++|+.|+++|....+..++..|+..|..+..-+.
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 4555667899999999999865688899999988888765443
No 301
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=22.32 E-value=1.1e+03 Score=26.30 Aligned_cols=169 Identities=17% Similarity=0.135 Sum_probs=92.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhccCcc-hhHHHHhh-h--H-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 008257 41 LLTQILEGPQETKLSLAAFLGDLALNSD-VKVLVART-V--G-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIH 115 (572)
Q Consensus 41 Lv~~L~~~~~~~~~~aa~~L~~l~~~~~-~k~~i~~~-g--~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~ 115 (572)
.+..+..-+.+.+.-|...|.-+..+.. +-..+... | . ..++..++ .++..+.-++++|.|+-.++.+++.+..
T Consensus 549 ~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s 627 (745)
T KOG0301|consen 549 ALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMS 627 (745)
T ss_pred HHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3455566777888888777765554332 22223222 2 2 45555555 6678899999999999998777766542
Q ss_pred cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhc-----CChhHHH
Q 008257 116 AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN-----TGPTIEC 190 (572)
Q Consensus 116 ~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~-----~~~~~q~ 190 (572)
. ...+...+....+ ..+..++..-+....|.+-.- -+.. ...+..+.+...+.. .+.+...
T Consensus 628 ~--~~~i~~~~~~~~s-~~~knl~ia~atlaln~sv~l--------~~~~---~~~~~~~~l~~ai~~~~e~~~d~EA~y 693 (745)
T KOG0301|consen 628 R--LESILDPVIEASS-LSNKNLQIALATLALNYSVLL--------IQDN---EQLEGKEVLLSAISTLLEPVDDLEAIY 693 (745)
T ss_pred H--HHHHhhhhhhhhc-ccchhHHHHHHHHHHHHHHHH--------Hhcc---cccchHHHHHHHHHhhcccchhHHHHH
Confidence 2 2222222211100 112567776666666665310 0000 113445555555542 2334455
Q ss_pred HHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcC
Q 008257 191 KLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA 228 (572)
Q Consensus 191 ~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~ 228 (572)
+++.||.+|+..+.. ...+...-.+..++.-++.
T Consensus 694 R~l~AlgtL~t~~~~----~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 694 RLLVALGTLMTVDAS----VIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHHHHhhccccHH----HHHHHHhcCHHHHHHHHHH
Confidence 677777788776532 3344555566666666543
No 302
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=21.89 E-value=2.9e+02 Score=23.45 Aligned_cols=42 Identities=14% Similarity=0.384 Sum_probs=30.8
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHh
Q 008257 172 DIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKS 215 (572)
Q Consensus 172 ~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~ 215 (572)
.++.-|.+=|+..++.|+.++++.|-.+|..... .++..+++
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~--~f~~~~~~ 79 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNS--DFKRELQR 79 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCH--HHHHHHHH
Confidence 4566677777788899999999999999876542 45544443
No 303
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=21.81 E-value=4.3e+02 Score=21.74 Aligned_cols=68 Identities=16% Similarity=0.222 Sum_probs=45.7
Q ss_pred chHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHh--------hcCCHHHHHHHHHHHHH
Q 008257 444 AVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLL--------EKRTENLQRRAVWVVER 515 (572)
Q Consensus 444 ~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~--------~~~~~~~~~~a~~~l~~ 515 (572)
++..|.+-|.+.++.++..|+..|-.++.++.. .....+.... .+.++++ ...+..+|+++..++..
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~--~f~~~i~~~~---~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGE--RFHQEVASND---FAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH--HHHHHHHHhH---HHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 667777778889999999999999999987641 2223344432 3334431 12357788888888766
Q ss_pred H
Q 008257 516 I 516 (572)
Q Consensus 516 l 516 (572)
.
T Consensus 113 w 113 (115)
T cd00197 113 W 113 (115)
T ss_pred H
Confidence 5
Done!