Query 008257
Match_columns 572
No_of_seqs 218 out of 1859
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 21:54:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jdh_A Beta-catenin; beta-cate 100.0 7.7E-45 2.7E-49 393.8 35.8 478 3-559 25-529 (529)
2 3now_A UNC-45 protein, SD10334 100.0 1.1E-45 3.7E-50 407.6 28.3 449 2-520 297-784 (810)
3 3now_A UNC-45 protein, SD10334 100.0 2.1E-44 7.1E-49 397.4 33.4 481 6-560 258-782 (810)
4 2z6h_A Catenin beta-1, beta-ca 100.0 8.2E-44 2.8E-48 395.0 37.7 481 3-562 22-529 (644)
5 3ul1_B Importin subunit alpha- 100.0 7E-44 2.4E-48 384.2 34.9 407 2-519 64-479 (510)
6 3tpo_A Importin subunit alpha- 100.0 1.6E-42 5.4E-47 375.6 37.2 406 3-519 84-498 (529)
7 2z6g_A B-catenin; FULL-length, 100.0 4.3E-42 1.5E-46 387.5 34.9 479 3-563 158-666 (780)
8 3l6x_A Catenin delta-1; cateni 100.0 3.5E-41 1.2E-45 360.3 30.4 395 34-528 46-486 (584)
9 3ul1_B Importin subunit alpha- 100.0 1.5E-40 5.2E-45 358.2 35.0 406 78-560 59-478 (510)
10 1jdh_A Beta-catenin; beta-cate 100.0 1.9E-40 6.4E-45 359.3 35.2 449 6-516 71-528 (529)
11 1xm9_A Plakophilin 1; armadill 100.0 3.3E-41 1.1E-45 358.0 27.5 366 37-524 3-455 (457)
12 3tpo_A Importin subunit alpha- 100.0 2.4E-39 8.1E-44 350.7 36.3 406 78-560 78-497 (529)
13 2z6h_A Catenin beta-1, beta-ca 100.0 4.5E-39 1.5E-43 356.9 38.6 452 6-519 68-528 (644)
14 4b8j_A Importin subunit alpha- 100.0 7.6E-39 2.6E-43 347.1 36.4 411 36-520 74-498 (528)
15 2z6g_A B-catenin; FULL-length, 100.0 9.1E-39 3.1E-43 360.4 37.3 472 6-544 204-686 (780)
16 3nmz_A APC variant protein; pr 100.0 3E-39 1E-43 338.3 26.5 363 1-392 38-452 (458)
17 1wa5_B Importin alpha subunit; 100.0 1.5E-37 5.2E-42 336.9 37.7 415 34-520 85-512 (530)
18 3l6x_A Catenin delta-1; cateni 100.0 8.7E-39 3E-43 341.9 27.4 387 2-491 55-490 (584)
19 4b8j_A Importin subunit alpha- 100.0 3.1E-36 1.1E-40 326.5 40.6 410 3-474 82-498 (528)
20 3nmz_A APC variant protein; pr 100.0 1.4E-37 4.7E-42 325.7 27.6 366 79-519 35-451 (458)
21 1wa5_B Importin alpha subunit; 100.0 1.3E-35 4.6E-40 321.7 41.6 411 3-475 95-513 (530)
22 1xm9_A Plakophilin 1; armadill 100.0 2.4E-37 8.1E-42 328.4 26.8 369 3-475 10-452 (457)
23 2jdq_A Importin alpha-1 subuni 100.0 2.7E-36 9.1E-41 319.8 32.8 410 37-520 21-445 (450)
24 2jdq_A Importin alpha-1 subuni 100.0 5.5E-35 1.9E-39 309.7 38.3 411 3-474 28-445 (450)
25 3nmw_A APC variant protein; AR 100.0 9.2E-33 3.1E-37 281.1 20.4 282 88-395 44-339 (354)
26 3nmw_A APC variant protein; AR 100.0 2.1E-32 7.3E-37 278.3 19.7 266 10-345 47-335 (354)
27 3opb_A SWI5-dependent HO expre 99.9 5.8E-27 2E-31 253.7 23.1 468 7-545 268-761 (778)
28 4hxt_A De novo protein OR329; 99.9 4.2E-25 1.4E-29 214.6 26.1 241 78-394 4-245 (252)
29 3opb_A SWI5-dependent HO expre 99.9 2E-24 7E-29 233.8 30.9 433 55-562 231-730 (778)
30 4db8_A Armadillo-repeat protei 99.9 4.4E-26 1.5E-30 222.1 15.9 229 3-247 20-252 (252)
31 4hxt_A De novo protein OR329; 99.9 2.4E-24 8.3E-29 209.1 26.3 243 172-475 2-244 (252)
32 4db8_A Armadillo-repeat protei 99.9 5.4E-25 1.8E-29 214.3 20.3 237 36-292 12-251 (252)
33 3tt9_A Plakophilin-2; cell adh 99.9 2.4E-24 8.2E-29 204.4 14.3 194 37-247 9-230 (233)
34 4db6_A Armadillo repeat protei 99.9 1E-22 3.6E-27 192.4 18.2 198 34-247 10-210 (210)
35 4db6_A Armadillo repeat protei 99.9 1.4E-21 4.7E-26 184.7 22.6 200 170-390 10-209 (210)
36 3tt9_A Plakophilin-2; cell adh 99.9 9.5E-23 3.3E-27 193.4 11.6 192 2-202 15-230 (233)
37 1xqr_A HSPBP1 protein; armadil 99.9 1.3E-20 4.3E-25 186.6 23.7 227 231-519 54-288 (296)
38 1xqr_A HSPBP1 protein; armadil 99.9 1.2E-20 4E-25 186.9 17.7 182 9-203 54-240 (296)
39 3grl_A General vesicular trans 99.8 1E-16 3.6E-21 169.3 31.1 398 76-561 21-450 (651)
40 1b3u_A Protein (protein phosph 99.8 1.2E-16 4.2E-21 174.3 32.7 334 5-391 97-432 (588)
41 1b3u_A Protein (protein phosph 99.8 5.3E-17 1.8E-21 177.2 27.5 451 5-560 136-587 (588)
42 3grl_A General vesicular trans 99.8 3.2E-15 1.1E-19 158.1 38.8 472 37-565 22-555 (651)
43 2vgl_B AP-2 complex subunit be 99.7 1.2E-15 4.1E-20 166.8 24.6 323 4-390 58-382 (591)
44 4fdd_A Transportin-1; heat rep 99.7 3.1E-15 1.1E-19 170.9 25.0 481 1-559 1-511 (852)
45 4fdd_A Transportin-1; heat rep 99.7 3.5E-15 1.2E-19 170.5 21.9 475 3-560 182-699 (852)
46 2vgl_B AP-2 complex subunit be 99.6 7.6E-14 2.6E-18 152.5 30.0 431 3-560 94-532 (591)
47 1oyz_A Hypothetical protein YI 99.6 2.6E-13 8.8E-18 133.8 25.1 260 30-386 17-278 (280)
48 1oyz_A Hypothetical protein YI 99.6 4.1E-13 1.4E-17 132.3 22.2 260 113-515 19-279 (280)
49 1w63_A Adapter-related protein 99.5 1.6E-12 5.4E-17 142.7 26.0 440 4-562 116-579 (618)
50 1qgr_A Protein (importin beta 99.5 7E-12 2.4E-16 143.3 30.0 479 5-565 269-876 (876)
51 2bpt_A Importin beta-1 subunit 99.5 2.7E-11 9.1E-16 138.2 30.4 471 4-560 275-811 (861)
52 2bpt_A Importin beta-1 subunit 99.4 2.3E-11 7.9E-16 138.7 29.5 467 8-560 194-711 (861)
53 1w63_A Adapter-related protein 99.4 1.9E-10 6.6E-15 126.1 30.9 258 79-393 73-345 (618)
54 1u6g_C TIP120 protein, CAND1; 99.3 6.5E-10 2.2E-14 131.9 33.6 480 4-561 15-599 (1230)
55 3ltm_A Alpha-REP4; protein eng 99.3 3.1E-11 1.1E-15 113.4 17.9 188 35-294 18-205 (211)
56 1qgr_A Protein (importin beta 99.3 1.2E-10 4.1E-15 133.0 25.7 430 40-561 5-480 (876)
57 3ltm_A Alpha-REP4; protein eng 99.3 4.4E-11 1.5E-15 112.3 17.6 192 261-567 19-210 (211)
58 1ibr_B P95, importin beta-1 su 99.3 1E-10 3.5E-15 123.2 20.9 387 5-473 11-438 (462)
59 3ltj_A Alpharep-4; protein eng 99.3 6.2E-11 2.1E-15 110.4 16.9 184 36-291 14-197 (201)
60 1ibr_B P95, importin beta-1 su 99.3 1E-10 3.4E-15 123.3 19.1 388 40-519 5-438 (462)
61 3ltj_A Alpharep-4; protein eng 99.3 9.5E-11 3.3E-15 109.1 16.5 176 3-245 22-197 (201)
62 2vgl_A Adaptor protein complex 99.3 1.4E-08 4.8E-13 111.0 34.9 458 4-561 83-590 (621)
63 1u6g_C TIP120 protein, CAND1; 99.2 3E-09 1E-13 126.2 28.0 469 5-562 96-681 (1230)
64 4gmo_A Putative uncharacterize 99.0 8.1E-10 2.8E-14 122.4 10.6 203 172-390 34-258 (684)
65 2vgl_A Adaptor protein complex 99.0 8.1E-08 2.8E-12 105.0 25.2 337 78-517 76-432 (621)
66 4gmo_A Putative uncharacterize 99.0 2.7E-09 9.2E-14 118.2 13.2 216 34-290 32-256 (684)
67 4ady_A RPN2, 26S proteasome re 98.4 6.8E-05 2.3E-09 83.5 25.9 275 78-473 394-677 (963)
68 1te4_A Conserved protein MTH18 98.3 1.6E-07 5.3E-12 80.8 2.0 121 35-199 11-131 (131)
69 4ady_A RPN2, 26S proteasome re 98.3 0.00026 8.9E-09 78.9 27.0 274 118-518 393-676 (963)
70 1ho8_A Vacuolar ATP synthase s 98.3 0.0006 2.1E-08 69.9 27.6 350 77-519 78-477 (480)
71 1te4_A Conserved protein MTH18 98.3 1.2E-07 4.3E-12 81.4 0.1 118 78-244 14-131 (131)
72 3b2a_A TON_1937, putative unch 98.2 4.5E-05 1.6E-09 69.9 16.2 184 36-247 33-219 (265)
73 2qk2_A LP04448P; mini spindles 98.2 9.4E-06 3.2E-10 77.5 12.2 187 39-249 18-208 (242)
74 3b2a_A TON_1937, putative unch 98.2 5.7E-05 2E-09 69.3 16.4 176 4-203 42-220 (265)
75 3tjz_B Coatomer subunit gamma; 98.2 3.5E-05 1.2E-09 77.2 15.4 281 118-515 69-350 (355)
76 2db0_A 253AA long hypothetical 98.0 0.00027 9.4E-09 62.1 16.8 216 115-390 30-246 (253)
77 2db0_A 253AA long hypothetical 98.0 0.0012 4.1E-08 58.1 19.8 220 261-566 32-252 (253)
78 3tjz_B Coatomer subunit gamma; 98.0 0.00021 7.1E-09 71.5 17.1 256 4-316 77-335 (355)
79 2qk2_A LP04448P; mini spindles 97.9 4.2E-05 1.5E-09 72.8 10.2 184 79-292 18-205 (242)
80 2qk1_A Protein STU2; STU2P, XM 97.7 0.0003 1E-08 67.3 12.9 190 41-246 21-220 (249)
81 1ho8_A Vacuolar ATP synthase s 97.7 0.015 5E-07 59.8 25.0 341 171-559 76-475 (480)
82 1wa5_C Importin alpha RE-expor 97.5 0.019 6.6E-07 65.9 26.8 392 77-561 35-526 (960)
83 2qk1_A Protein STU2; STU2P, XM 97.5 0.00062 2.1E-08 65.1 11.5 210 79-316 19-236 (249)
84 2iw3_A Elongation factor 3A; a 97.3 0.011 3.9E-07 66.6 20.7 268 217-564 54-328 (986)
85 3dad_A FH1/FH2 domain-containi 97.3 0.0034 1.2E-07 61.3 13.5 154 79-245 121-285 (339)
86 2iw3_A Elongation factor 3A; a 97.2 0.044 1.5E-06 61.8 23.7 299 41-391 19-325 (986)
87 3dad_A FH1/FH2 domain-containi 97.2 0.0057 1.9E-07 59.7 14.2 155 39-199 121-284 (339)
88 1wa5_C Importin alpha RE-expor 97.2 0.56 1.9E-05 53.7 33.4 350 11-391 262-671 (960)
89 2x19_B Importin-13; nuclear tr 97.1 0.52 1.8E-05 53.8 32.8 194 36-247 57-269 (963)
90 4hat_C Exportin-1; heat repeat 97.0 0.45 1.5E-05 54.6 29.9 221 38-292 18-263 (1023)
91 3m1i_C Exportin-1; heat repeat 96.5 1.7 5.9E-05 50.1 30.8 216 42-290 22-261 (1049)
92 2x1g_F Cadmus; transport prote 96.0 3.1 0.00011 47.4 29.5 129 8-151 20-157 (971)
93 1lrv_A LRV, leucine-rich repea 95.7 0.035 1.2E-06 52.4 9.2 170 179-385 57-241 (244)
94 4ffb_C Protein STU2; tubulin f 95.5 0.25 8.5E-06 47.5 14.7 188 40-249 13-215 (278)
95 2fv2_A RCD1 required for cell 95.0 0.42 1.4E-05 44.6 13.3 201 230-473 14-225 (268)
96 2fv2_A RCD1 required for cell 94.3 0.38 1.3E-05 44.9 11.2 155 190-358 74-234 (268)
97 1lrv_A LRV, leucine-rich repea 94.2 0.16 5.4E-06 47.9 8.9 35 349-384 159-193 (244)
98 3ibv_A Exportin-T; karyopherin 93.8 12 0.0004 42.7 27.1 209 8-246 21-260 (980)
99 4ffb_C Protein STU2; tubulin f 93.0 0.47 1.6E-05 45.4 10.2 154 361-562 56-214 (278)
100 1upk_A MO25 protein; transfera 92.3 0.74 2.5E-05 44.8 10.3 213 34-258 76-297 (341)
101 2of3_A ZYG-9; multifunctional 91.7 0.77 2.6E-05 43.6 9.6 109 361-526 133-246 (266)
102 2of3_A ZYG-9; multifunctional 91.6 2.9 9.8E-05 39.6 13.4 183 39-252 49-242 (266)
103 3oc3_A Helicase MOT1, MOT1; re 89.6 1.9 6.3E-05 45.1 10.6 206 136-389 188-403 (800)
104 2x19_B Importin-13; nuclear tr 89.6 31 0.0011 38.9 34.8 462 6-560 69-599 (963)
105 2x1g_F Cadmus; transport prote 89.3 4.7 0.00016 45.9 15.3 139 88-247 476-616 (971)
106 3m1i_C Exportin-1; heat repeat 89.2 36 0.0012 39.0 30.3 108 37-152 139-264 (1049)
107 3ebb_A Phospholipase A2-activa 87.6 7.2 0.00025 37.7 13.1 153 39-203 106-265 (304)
108 1upk_A MO25 protein; transfera 85.9 5.5 0.00019 38.8 10.9 143 6-153 134-285 (341)
109 3u0r_A Apoptosis inhibitor 5; 85.6 8.9 0.0003 39.2 12.7 121 46-197 38-159 (507)
110 3ebb_A Phospholipase A2-activa 85.2 5.5 0.00019 38.5 10.8 117 7-123 160-281 (304)
111 3eg5_B Protein diaphanous homo 82.8 28 0.00096 34.7 15.2 155 74-235 107-283 (383)
112 3oc3_A Helicase MOT1, MOT1; re 81.2 5.7 0.0002 41.5 9.2 153 50-245 242-403 (800)
113 2f31_A Diaphanous protein homo 80.0 10 0.00036 34.9 10.2 152 76-233 43-215 (233)
114 3gjx_A Exportin-1; transport, 79.3 34 0.0012 39.2 16.0 222 38-292 30-275 (1073)
115 3l9t_A Putative uncharacterize 76.7 25 0.00085 32.4 11.3 131 136-303 85-218 (240)
116 3eg5_B Protein diaphanous homo 75.7 16 0.00056 36.4 10.9 140 171-316 108-275 (383)
117 2f31_A Diaphanous protein homo 74.9 13 0.00043 34.4 9.1 140 171-316 42-209 (233)
118 1lsh_A Lipovitellin (LV-1N, LV 73.9 1.3E+02 0.0044 34.4 22.4 244 79-392 314-578 (1056)
119 3u0r_A Apoptosis inhibitor 5; 73.8 5.5 0.00019 40.7 6.6 91 454-560 39-129 (507)
120 3c2g_A SYS-1 protein; beta-cat 73.1 28 0.00096 33.9 10.9 137 11-149 259-401 (619)
121 2bnx_A Diaphanous protein homo 71.4 85 0.0029 31.2 16.5 152 75-274 46-215 (386)
122 4hat_C Exportin-1; heat repeat 71.0 16 0.00056 41.7 10.6 144 229-393 465-621 (1023)
123 2bnx_A Diaphanous protein homo 69.9 27 0.00093 34.9 10.9 139 172-316 47-213 (386)
124 3ibv_A Exportin-T; karyopherin 69.2 1.6E+02 0.0054 33.4 23.3 208 49-291 21-259 (980)
125 3a6p_A Exportin-5; exportin-5, 64.0 90 0.0031 36.3 15.2 208 49-292 26-276 (1204)
126 3qml_C Protein SLS1, nucleotid 59.9 22 0.00076 34.0 7.4 148 79-244 25-187 (315)
127 3c2g_A SYS-1 protein; beta-cat 59.4 1.4E+02 0.0047 29.3 17.1 168 196-372 266-450 (619)
128 3l9t_A Putative uncharacterize 59.0 1.1E+02 0.0037 28.1 15.4 143 79-256 74-217 (240)
129 1x5b_A Signal transducing adap 57.7 28 0.00096 30.0 7.2 72 444-517 53-124 (163)
130 3ldz_A STAM-1, signal transduc 57.5 13 0.00046 31.2 5.0 73 171-245 41-113 (140)
131 1lsh_A Lipovitellin (LV-1N, LV 56.0 1.2E+02 0.004 34.8 14.1 131 79-248 443-578 (1056)
132 3o2t_A Symplekin; heat repeat, 54.5 63 0.0022 32.1 10.0 110 359-517 62-182 (386)
133 1x5b_A Signal transducing adap 53.6 21 0.00072 30.8 5.7 73 171-245 51-124 (163)
134 3zyq_A Hepatocyte growth facto 53.3 26 0.00089 32.1 6.6 72 444-517 46-117 (226)
135 3g2s_A C-terminal fragment of 52.8 23 0.00077 30.1 5.7 73 171-245 47-125 (149)
136 3a6p_A Exportin-5; exportin-5, 52.3 2E+02 0.0069 33.3 15.5 189 37-247 46-277 (1204)
137 1mhq_A ADP-ribosylation factor 51.2 22 0.00076 30.1 5.4 73 171-245 37-115 (148)
138 3ldz_A STAM-1, signal transduc 49.2 42 0.0015 28.0 6.8 71 444-517 43-113 (140)
139 3gs3_A Symplekin, LD45768P; he 48.9 1E+02 0.0035 28.7 10.0 108 361-517 54-172 (257)
140 3g2s_A C-terminal fragment of 46.0 59 0.002 27.5 7.2 72 444-517 49-125 (149)
141 1juq_A ADP-ribosylation factor 45.3 27 0.00093 30.4 5.1 73 171-245 49-127 (171)
142 1dvp_A HRS, hepatocyte growth 44.5 46 0.0016 30.2 6.9 72 444-517 43-114 (220)
143 1mhq_A ADP-ribosylation factor 40.8 60 0.0021 27.4 6.5 69 37-105 39-116 (148)
144 1juq_A ADP-ribosylation factor 39.7 70 0.0024 27.7 6.9 72 444-517 51-127 (171)
145 3gs3_A Symplekin, LD45768P; he 38.7 1.5E+02 0.0051 27.5 9.4 104 171-287 52-168 (257)
146 3gae_A Protein DOA1; UFD3, CDC 38.1 20 0.00068 33.5 3.3 101 6-108 101-220 (253)
147 3qml_C Protein SLS1, nucleotid 34.9 2.3E+02 0.0078 27.1 9.9 135 8-150 41-188 (315)
148 3zyq_A Hepatocyte growth facto 33.2 30 0.001 31.6 3.6 69 218-288 46-114 (226)
149 1dvp_A HRS, hepatocyte growth 32.4 33 0.0011 31.2 3.7 67 218-286 43-109 (220)
150 1elk_A Target of MYB1; superhe 25.8 1.6E+02 0.0055 24.9 6.8 72 444-517 54-129 (157)
151 1elk_A Target of MYB1; superhe 25.5 98 0.0033 26.3 5.3 73 171-245 52-129 (157)
152 3gae_A Protein DOA1; UFD3, CDC 22.9 1.2E+02 0.0041 28.1 5.8 106 85-201 99-217 (253)
153 1zoq_C CREB-binding protein, i 21.8 1.5E+02 0.005 19.2 4.0 37 262-303 2-38 (47)
154 3pst_A Protein DOA1; protein d 20.8 1.2E+02 0.0039 30.6 5.4 99 6-107 273-391 (425)
155 1vdy_A Hypothetical protein (R 20.4 2.1E+02 0.0071 23.8 6.1 74 172-247 49-131 (140)
No 1
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=7.7e-45 Score=393.76 Aligned_cols=478 Identities=16% Similarity=0.167 Sum_probs=399.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCcchHHHHHHc-CCcHHHHHHHccC-CHHHHHHHHHHHHHhccCcchhHHHHhhhH-H
Q 008257 3 SSKSENLLTVEKAEKTLANLEKCENNVRQMAEN-GRLQPLLTQILEG-PQETKLSLAAFLGDLALNSDVKVLVARTVG-S 79 (572)
Q Consensus 3 ~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~-g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~ 79 (572)
+++++|+.+++.|..+|.+|+.+++++..++.. |++++|+++|+++ +++++..++.+|.+++.+++++..+.+.|+ |
T Consensus 25 lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~ 104 (529)
T 1jdh_A 25 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIP 104 (529)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHH
Confidence 467899999999999999999988888888755 8999999999866 789999999999999998889999988888 9
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHhhcCC-CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257 80 CLINIMKSGNMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS 158 (572)
Q Consensus 80 ~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~-~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~ 158 (572)
.|+++|+++++.+|..|+++|.+|+.++ .++..+++.|++|+|+++|.++ +..++..++.+|.+++..+.+.
T Consensus 105 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-----~~~~~~~~~~~L~~la~~~~~~-- 177 (529)
T 1jdh_A 105 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-----NVKFLAITTDCLQILAYGNQES-- 177 (529)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC-----CHHHHHHHHHHHHHHHTTCHHH--
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC-----CHHHHHHHHHHHHHHHhCCHHH--
Confidence 9999999999999999999999999874 4577778999999999999864 3788999999999998743221
Q ss_pred cccCCCccccchhhhHHHHHHHHhcCCh-hHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHH
Q 008257 159 ITVGPDNQTLVSEDIVHNLLHLISNTGP-TIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLAS 237 (572)
Q Consensus 159 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~-~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a 237 (572)
...+...|+++.|+++|+++++ ..+..+.++|.+++..+. .+..+.+.|+++.|+.++.+++++++..+
T Consensus 178 ------~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~g~~~~L~~ll~~~~~~~~~~a 247 (529)
T 1jdh_A 178 ------KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIVEAGGMQALGLHLTDPSQRLVQNC 247 (529)
T ss_dssp ------HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT----HHHHHHHTTHHHHHHTTTTSSCHHHHHHH
T ss_pred ------HHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcc----cHHHHHHCCCHHHHHHHHhCCChHHHHHH
Confidence 1345667899999999997654 566788999999998653 57788899999999999999999999999
Q ss_pred HHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhh
Q 008257 238 IELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSI 317 (572)
Q Consensus 238 ~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~ 317 (572)
+++|.+|+.+.+.. .... |+++.|+++|.++++ +++..|+++|++|+.++++.++.+.+.|+++.|+.+|.+.
T Consensus 248 ~~~L~~l~~~~~~~----~~~~-~~i~~L~~ll~~~~~--~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~ 320 (529)
T 1jdh_A 248 LWTLRNLSDAATKQ----EGME-GLLGTLVQLLGSDDI--NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 320 (529)
T ss_dssp HHHHHHHHTTCTTC----SCCH-HHHHHHHHHTTCSCH--HHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCChhh----HHHH-hHHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHcc
Confidence 99999999764322 1122 789999999988775 8999999999999998888889999999999999999863
Q ss_pred ccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCC
Q 008257 318 QLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTK 397 (572)
Q Consensus 318 ~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~ 397 (572)
. ....+++.++++|.+++.....++..+..+.+.|++|.|+++|+++.++.+++.++++|+|++.+..
T Consensus 321 ~--------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~---- 388 (529)
T 1jdh_A 321 G--------DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA---- 388 (529)
T ss_dssp T--------TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG----
T ss_pred C--------CHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh----
Confidence 1 1356789999999999864111133677899999999999999998346999999999999986432
Q ss_pred CCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHH----------------
Q 008257 398 LPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVE---------------- 461 (572)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~---------------- 461 (572)
+...+++.|++++|+++|++++.+++.
T Consensus 389 -------------------------------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~ 431 (529)
T 1jdh_A 389 -------------------------------------NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 431 (529)
T ss_dssp -------------------------------------GHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBC
T ss_pred -------------------------------------hhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhcccc
Confidence 122467899999999999876666655
Q ss_pred ------HHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHH
Q 008257 462 ------ASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTA 535 (572)
Q Consensus 462 ------~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 535 (572)
.++.+|++|+.+. .....+.+.|++++|++++ .++++.++..|+++|.++...++.+..+...+++. .
T Consensus 432 ~~~i~~~~~~al~~L~~~~----~~~~~l~~~~~v~~l~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~-~ 505 (529)
T 1jdh_A 432 MEEIVEGCTGALHILARDV----HNRIVIRGLNTIPLFVQLL-YSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATA-P 505 (529)
T ss_dssp HHHHHHHHHHHHHHHTTSH----HHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHH-H
T ss_pred HHHHHHHHHHHHHHHhcCc----hHHHHHhccCCccHHHHHH-cCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChH-H
Confidence 4555666666542 3456789999999999999 59999999999999999987777888888777775 9
Q ss_pred HHHHhhcCCchhHHHHHHHHHhhc
Q 008257 536 LVDAFQHADYRTRQIAERALKHID 559 (572)
Q Consensus 536 Lv~ll~~~~~~~~~~Aa~aL~~L~ 559 (572)
|.++++++++++++.|.++|.+|+
T Consensus 506 L~~l~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 506 LTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999884
No 2
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-45 Score=407.61 Aligned_cols=449 Identities=12% Similarity=0.086 Sum_probs=371.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC--cchh-HHHHhh--
Q 008257 2 TSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN--SDVK-VLVART-- 76 (572)
Q Consensus 2 ~~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~--~~~k-~~i~~~-- 76 (572)
.|++|+|+.+++.|..++.+++.++.+++.+.+.|+ ++|+.++++++..+|..|+.+|.+++.+ .+.+ ..+.+.
T Consensus 297 ~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i 375 (810)
T 3now_A 297 AMATTDDELQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAA 375 (810)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccH
Confidence 356899999999999999999999999999999986 9999999999999999999999999752 2333 333332
Q ss_pred -hH-HHHHHhcccC--CHHHHHHHHHHHHHhhcCCCcHHHHH-HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHh
Q 008257 77 -VG-SCLINIMKSG--NMQAREAALKALNQISSCEPSAKVLI-HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVN 151 (572)
Q Consensus 77 -g~-~~Lv~lL~s~--~~~~~~~A~~aL~~Ls~~~~~~~~iv-~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~ 151 (572)
.. +.|+++|.++ +.++++.|+++|.+|+.+++.+..++ +.|+||+|+++|++. ++.++..|+++|.||+.
T Consensus 376 ~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~-----d~~i~~~al~~L~NLt~ 450 (810)
T 3now_A 376 LKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGG-----NQSCLYGVVTTFVNLCN 450 (810)
T ss_dssp HHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCC-----ChHHHHHHHHHHHHHcC
Confidence 23 6788999987 88999999999999999999988888 689999999999874 27899999999999998
Q ss_pred cCCCCCcc--------ccCCC----------------ccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccH
Q 008257 152 SGHDFDSI--------TVGPD----------------NQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVL 207 (572)
Q Consensus 152 ~~~~~~~~--------~~~~~----------------~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~ 207 (572)
+.+..+.. ..+++ .+.+...|+||.|+.+|+++++.+|++|+|+|.+++.++
T Consensus 451 ~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~---- 526 (810)
T 3now_A 451 AYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK---- 526 (810)
T ss_dssp CSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH----
T ss_pred CchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH----
Confidence 54211000 00010 035667899999999999999999999999999999763
Q ss_pred HHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHH-HHhcccCChhhHHhhhccCCCChHHHHHHHHH
Q 008257 208 SVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELAD-ALRGAVGQLGSLIRVISENVGISKEQAAAVGL 286 (572)
Q Consensus 208 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~-~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~ 286 (572)
+.|..+.++|++|+|+.+|.++++..|+.|+++|.+|+.+.+++..- .-... |++|+|+.+|.++.. ...+..|+++
T Consensus 527 ~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~-~aIppLv~LL~~~~~-~l~~~eAl~A 604 (810)
T 3now_A 527 ELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSL-DVIRPLLNLLQQDCT-ALENFESLMA 604 (810)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHH-HTHHHHHHTTSTTSC-HHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhh-cHHHHHHHHhCCCCc-HHHHHHHHHH
Confidence 57889999999999999999999999999999999998653333210 00112 689999999987654 2556789999
Q ss_pred HhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHH-cCchHHH
Q 008257 287 LAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCE-HNLAALF 365 (572)
Q Consensus 287 L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~-~g~i~~L 365 (572)
|.||+..+++.++.++++|++|+|+.+|.+. +..+++.|+++|++++. +++.+..+.+ .|.+|+|
T Consensus 605 L~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~----------~~~Vq~~A~~~L~NLa~----~~~~~~~~v~~~g~l~~L 670 (810)
T 3now_A 605 LTNLASMNESVRQRIIKEQGVSKIEYYLMED----------HLYLTRAAAQCLCNLVM----SEDVIKMFEGNNDRVKFL 670 (810)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC----------CTTHHHHHHHHHHHHTT----SHHHHHHHHSSSSHHHHH
T ss_pred HHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC----------CHHHHHHHHHHHHHHhC----ChHHHHHHHhccCcHHHH
Confidence 9999998888889999999999999999862 45678999999999994 6777777775 7999999
Q ss_pred HHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhh-ccc
Q 008257 366 IELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLE-GHA 444 (572)
Q Consensus 366 v~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~-~g~ 444 (572)
+.++.++ +..+|+.|+|+|++++..++.. ...+++ .|+
T Consensus 671 v~LL~s~-d~~vq~~Aa~ALanLt~~s~~~----------------------------------------~~~ii~~~g~ 709 (810)
T 3now_A 671 ALLCEDE-DEETATACAGALAIITSVSVKC----------------------------------------CEKILAIASW 709 (810)
T ss_dssp HHGGGCS-SHHHHHHHHHHHHHHHHHCHHH----------------------------------------HHHHHTSTTH
T ss_pred HHHhcCC-CHHHHHHHHHHHHHHhCCCHHH----------------------------------------HHHHHHHcCC
Confidence 9999998 9999999999999998743211 123566 899
Q ss_pred hHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhc--CCHHHHHHHHHHHHHHHcch
Q 008257 445 VEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEK--RTENLQRRAVWVVERILRTD 520 (572)
Q Consensus 445 i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~~~~~~a~~~l~~l~~~~ 520 (572)
|++|++||.+++.+++..|+++|++++..+. .....|.++|++++|+++++.+ .+..+.+.|..+|.++....
T Consensus 710 I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~---e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 710 LDILHTLIANPSPAVQHRGIVIILNMINAGE---EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHTTCH---HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHhCCH---HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999997543 4578999999999999999544 47899999999999998653
No 3
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.1e-44 Score=397.44 Aligned_cols=481 Identities=14% Similarity=0.122 Sum_probs=387.5
Q ss_pred CCCHHHHHHHHHHHHhhccCcch--HHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHH
Q 008257 6 SENLLTVEKAEKTLANLEKCENN--VRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLIN 83 (572)
Q Consensus 6 s~~~~~~~~A~~~L~~L~~~~~n--~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~ 83 (572)
..+.+-...|..++.++...+.. ...+...|++++|+.++++.+..+|..|++++.+++.+.++|..|.+.|+|+|+.
T Consensus 258 ~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~ 337 (810)
T 3now_A 258 APDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKR 337 (810)
T ss_dssp SCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHH
T ss_pred cCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHH
Confidence 45666667788999999874433 3444488999999999999999999999999999988888999999988899999
Q ss_pred hcccCCHHHHHHHHHHHHHhhcCC--CcHHHHHHcCC----hHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCC
Q 008257 84 IMKSGNMQAREAALKALNQISSCE--PSAKVLIHAGI----LPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFD 157 (572)
Q Consensus 84 lL~s~~~~~~~~A~~aL~~Ls~~~--~~~~~iv~~G~----i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~ 157 (572)
++++++..+|..|+.+|++++.+. ++...+++.|+ ++.|+++|.++. .++++++.|+|.|++|+......+
T Consensus 338 Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~---~d~~v~~~AveaLayLS~~~~vk~ 414 (810)
T 3now_A 338 LYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPG---KDKDIRRWAADGLAYLTLDAECKE 414 (810)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSS---CCSSHHHHHHHHHHHHTTSHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHhCCcHHHH
Confidence 999999999999999999998643 23334555666 455777777641 137899999999999986432221
Q ss_pred ccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCcc--------------------------HHHH-
Q 008257 158 SITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTV--------------------------LSVV- 210 (572)
Q Consensus 158 ~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~--------------------------~~~~- 210 (572)
......|+||.|+++|+++++.++..++++|.|++.+.+.. +.++
T Consensus 415 --------~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~ 486 (810)
T 3now_A 415 --------KLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINK 486 (810)
T ss_dssp --------HHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHH
T ss_pred --------HHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHH
Confidence 12335799999999999999999999999999999864210 1233
Q ss_pred --HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHh
Q 008257 211 --SAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLA 288 (572)
Q Consensus 211 --~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~ 288 (572)
+.+.++|++|.|+.+|+++++.+|+.|+|+|.||+.+ .+.+..+.+. |++|+|+.+|.+++. ..+..|+++|+
T Consensus 487 r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d--~~~r~~Vv~~-Gaip~Lv~LL~s~~~--~~k~~Aa~AL~ 561 (810)
T 3now_A 487 RITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL--KELRGKVVQE-GGVKALLRMALEGTE--KGKRHATQALA 561 (810)
T ss_dssp HHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHT-THHHHHHHHHHSSCH--HHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHC-CCHHHHHHHHccCCH--HHHHHHHHHHH
Confidence 6788999999999999999999999999999999965 3455677777 999999999998885 88999999999
Q ss_pred cCCCC-cHHHHH-HHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHH
Q 008257 289 ELPER-DLGLTR-QMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFI 366 (572)
Q Consensus 289 ~L~~~-~~~~~~-~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv 366 (572)
+|+.+ +++..- .-...|++|+|+.+|.+.. ....+..|+++|.+++.. +++.++.+++.|++|.|+
T Consensus 562 nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~---------~~l~~~eAl~AL~NLa~~---~d~~~~~Ii~aG~l~~Lv 629 (810)
T 3now_A 562 RIGITINPEVSFSGQRSLDVIRPLLNLLQQDC---------TALENFESLMALTNLASM---NESVRQRIIKEQGVSKIE 629 (810)
T ss_dssp HHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTS---------CHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHH
T ss_pred HHhcCCChhhhhcchhhhcHHHHHHHHhCCCC---------cHHHHHHHHHHHHHHhcC---CHHHHHHHHHcCCHHHHH
Confidence 98753 333210 0011369999999997421 122345799999999964 678888999999999999
Q ss_pred HHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchH
Q 008257 367 ELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVE 446 (572)
Q Consensus 367 ~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~ 446 (572)
++|.++ ++.+|+.|+++|+|++.+.... ..| +...|+++
T Consensus 630 ~LL~s~-~~~Vq~~A~~~L~NLa~~~~~~---------------------------------------~~~-v~~~g~l~ 668 (810)
T 3now_A 630 YYLMED-HLYLTRAAAQCLCNLVMSEDVI---------------------------------------KMF-EGNNDRVK 668 (810)
T ss_dssp HHHHSC-CTTHHHHHHHHHHHHTTSHHHH---------------------------------------HHH-HSSSSHHH
T ss_pred HHHcCC-CHHHHHHHHHHHHHHhCChHHH---------------------------------------HHH-HhccCcHH
Confidence 999998 8999999999999998754321 111 22378999
Q ss_pred HHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHh-cCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc-hhhhh
Q 008257 447 KLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCE-AQGIKPILDVLLEKRTENLQRRAVWVVERILRT-DDIAY 524 (572)
Q Consensus 447 ~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~-~~~~~ 524 (572)
+|+.||++.+.+++.+|++||++|+.... .....+.+ .|++++|+++| .++++++|..|+|++.++..+ ++...
T Consensus 669 ~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~---~~~~~ii~~~g~I~~Lv~LL-~s~d~~vq~~A~~aL~NL~~~s~e~~~ 744 (810)
T 3now_A 669 FLALLCEDEDEETATACAGALAIITSVSV---KCCEKILAIASWLDILHTLI-ANPSPAVQHRGIVIILNMINAGEEIAK 744 (810)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHHCH---HHHHHHHTSTTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhCCCH---HHHHHHHHHcCCHHHHHHHH-CCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999997432 34567777 89999999999 599999999999999999965 66777
Q ss_pred hhcCCCCchHHHHHHhhcC---CchhHHHHHHHHHhhcc
Q 008257 525 EVSGDPNVSTALVDAFQHA---DYRTRQIAERALKHIDK 560 (572)
Q Consensus 525 ~~~~~~~~~~~Lv~ll~~~---~~~~~~~Aa~aL~~L~~ 560 (572)
.+...++++ +|+++++.. +.++.+.|..+|.++-+
T Consensus 745 ~l~e~G~i~-~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 745 KLFETDIME-LLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp HHHTSTHHH-HHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHH-HHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 888877775 999999765 68999999999999876
No 4
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.2e-44 Score=395.02 Aligned_cols=481 Identities=17% Similarity=0.176 Sum_probs=407.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCcchHHHHHHc-CCcHHHHHHHccC-CHHHHHHHHHHHHHhccCcchhHHHHhhhH-H
Q 008257 3 SSKSENLLTVEKAEKTLANLEKCENNVRQMAEN-GRLQPLLTQILEG-PQETKLSLAAFLGDLALNSDVKVLVARTVG-S 79 (572)
Q Consensus 3 ~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~-g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~ 79 (572)
+++++|+.+++.|+.+|.+|+..+.++..+++. |++++|++.|.++ +.+++..|+.+|.+++.+++++..+.+.|+ |
T Consensus 22 lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~ 101 (644)
T 2z6h_A 22 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIP 101 (644)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHH
Confidence 467899999999999999999988888888765 8999999999876 789999999999999998889999998888 9
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHhhcCC-CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257 80 CLINIMKSGNMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS 158 (572)
Q Consensus 80 ~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~-~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~ 158 (572)
.|+++|+++++.+|..|+++|.+|+.++ +.+..+++.|+||.|+++|++.+ ..++..++.+|.+++.....
T Consensus 102 ~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~La~~~~~--- 173 (644)
T 2z6h_A 102 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-----VKFLAITTDCLQILAYGNQE--- 173 (644)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC-----HHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC-----HHHHHHHHHHHHHHHhcCcH---
Confidence 9999999999999999999999999864 55677789999999999998642 57777888899999964321
Q ss_pred cccCCCccccchhhhHHHHHHHHhcCC-hhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHH
Q 008257 159 ITVGPDNQTLVSEDIVHNLLHLISNTG-PTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLAS 237 (572)
Q Consensus 159 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~-~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a 237 (572)
+...+...|+++.|+++|++.+ ..++..++++|.+++..+. .+..+.+.|+++.|+.++.+++..++..+
T Consensus 174 -----~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~----~~~~l~~~g~l~~L~~ll~~~~~~~~~~a 244 (644)
T 2z6h_A 174 -----SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIVEAGGMQALGLHLTDPSQRLVQNC 244 (644)
T ss_dssp -----HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT----HHHHHHHTTHHHHHHTTTTCSCHHHHHHH
T ss_pred -----HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc----cHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 1234667889999999998754 5678899999999997653 57888999999999999999999999999
Q ss_pred HHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhh
Q 008257 238 IELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSI 317 (572)
Q Consensus 238 ~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~ 317 (572)
+++|.+|+.+.... .... ++++.|+++|.+++. +++..|+++|++|+.++++.++.+++.|+++.|+.+|.+.
T Consensus 245 ~~~L~nL~~~~~~~----~~~~-~~i~~Lv~lL~~~d~--~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~ 317 (644)
T 2z6h_A 245 LWTLRNLSDAATKQ----EGME-GLLGTLVQLLGSDDI--NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 317 (644)
T ss_dssp HHHHHHHGGGCTTC----CSCH-HHHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhh----hhhh-hHHHHHHHHHcCCCH--HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHcc
Confidence 99999999763221 1112 689999999998875 8999999999999988888889999999999999999863
Q ss_pred ccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCC
Q 008257 318 QLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTK 397 (572)
Q Consensus 318 ~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~ 397 (572)
. ....+++.++++|.+++....++...+..+++.|++|.|+++|+++.++.+++.|+++|+|++.+..
T Consensus 318 ~--------~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~---- 385 (644)
T 2z6h_A 318 G--------DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA---- 385 (644)
T ss_dssp T--------TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG----
T ss_pred C--------CcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH----
Confidence 1 1257789999999999863111224667789999999999999987347999999999999986432
Q ss_pred CCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCC----------------------
Q 008257 398 LPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHT---------------------- 455 (572)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~---------------------- 455 (572)
+...+++.|++++|+++|.+.
T Consensus 386 -------------------------------------~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~ 428 (644)
T 2z6h_A 386 -------------------------------------NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 428 (644)
T ss_dssp -------------------------------------GHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSC
T ss_pred -------------------------------------HHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccccc
Confidence 123477999999999999763
Q ss_pred CHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHH
Q 008257 456 NEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTA 535 (572)
Q Consensus 456 ~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 535 (572)
++.+++.++.+|.+|+.+. .....+.+.|++++|+++| .++++.++..|+++|.++...++++..+...+++. .
T Consensus 429 ~~~v~~~a~~aL~~La~~~----~~~~~l~~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~-~ 502 (644)
T 2z6h_A 429 MEEIVEGCTGALHILARDV----HNRIVIRGLNTIPLFVQLL-YSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATA-P 502 (644)
T ss_dssp HHHHHHHHHHHHHHHTTSH----HHHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHH-H
T ss_pred HHHHHHHHHHHHHHHhcCH----HHHHHHHhCCcHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChh-H
Confidence 3567888999999999764 3467888999999999999 58999999999999999998888888888777775 9
Q ss_pred HHHHhhcCCchhHHHHHHHHHhhcccC
Q 008257 536 LVDAFQHADYRTRQIAERALKHIDKIP 562 (572)
Q Consensus 536 Lv~ll~~~~~~~~~~Aa~aL~~L~~~~ 562 (572)
|+++++++++++++.|+++|.+|....
T Consensus 503 L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 503 LTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999998754
No 5
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=7e-44 Score=384.20 Aligned_cols=407 Identities=17% Similarity=0.199 Sum_probs=340.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccCcch--HHHHHHcCCcHHHHHHHcc-CCHHHHHHHHHHHHHhcc-CcchhHHHHhhh
Q 008257 2 TSSKSENLLTVEKAEKTLANLEKCENN--VRQMAENGRLQPLLTQILE-GPQETKLSLAAFLGDLAL-NSDVKVLVARTV 77 (572)
Q Consensus 2 ~~~~s~~~~~~~~A~~~L~~L~~~~~n--~~~i~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g 77 (572)
.+++|+|++.+..|+..++.|-+.+.| +..++++|+||+|+++|+. +++++|.+|+++|++++. ++++++.+.+.|
T Consensus 64 ~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~G 143 (510)
T 3ul1_B 64 KGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGG 143 (510)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Confidence 357999999999999999987654444 8899999999999999975 568999999999999987 778889999988
Q ss_pred H-HHHHHhcccCCHHHHHHHHHHHHHhhcCCC-cHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257 78 G-SCLINIMKSGNMQAREAALKALNQISSCEP-SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD 155 (572)
Q Consensus 78 ~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~-~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~ 155 (572)
+ |.|+++|+++++++++.|+++|+||+.+.+ ++..+++.|++++|+.+|.+.+.+.....+++.++|+|.|++.+...
T Consensus 144 aIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~ 223 (510)
T 3ul1_B 144 AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP 223 (510)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSS
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccc
Confidence 8 999999999999999999999999998754 57788899999999999976421112234567788888888764321
Q ss_pred CCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHH
Q 008257 156 FDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRL 235 (572)
Q Consensus 156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 235 (572)
.. ......|++|.|+.+|.+++++++.
T Consensus 224 ~~-----------------------------------------------------~~~~~~~~lp~L~~LL~~~~~~v~~ 250 (510)
T 3ul1_B 224 AP-----------------------------------------------------PLDAVEQILPTLVRLLHHNDPEVLA 250 (510)
T ss_dssp CC-----------------------------------------------------CHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred hh-----------------------------------------------------HHHHHHhHHHHHHHHHhcCCHHHHH
Confidence 11 1112356899999999999999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHh
Q 008257 236 ASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVK 315 (572)
Q Consensus 236 ~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~ 315 (572)
.|+++|++|+.+.. +..+.+... |+++.|+++|.+++. .++..|+++|+|++.+++..++.+++.|+++.|+.+|.
T Consensus 251 ~A~~aL~~L~~~~~-~~~~~i~~~-g~i~~Lv~lL~~~~~--~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~ 326 (510)
T 3ul1_B 251 DSCWAISYLTDGPN-ERIEMVVKK-GVVPQLVKLLGATEL--PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 326 (510)
T ss_dssp HHHHHHHHHTSSCH-HHHHHHHTT-TCHHHHHHHHTCSCH--HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTT
T ss_pred HHHHHHHHHhhchh-hhHHHHHhc-ccchhhhhhhcCCCh--hhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhc
Confidence 99999999998743 434556666 999999999999885 89999999999999988899899999999999999997
Q ss_pred hhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhcccc
Q 008257 316 SIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNL 395 (572)
Q Consensus 316 ~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~ 395 (572)
+. ...+++.++++|++++.+ +++.++.+.+.|++|+|+++|+++ +..+|+.|+++|.|++....
T Consensus 327 ~~----------~~~v~~~A~~aL~nl~a~---~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~-- 390 (510)
T 3ul1_B 327 NP----------KTNIQKEATWTMSNITAG---RQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGT-- 390 (510)
T ss_dssp CS----------SHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCC--
T ss_pred CC----------CHHHHHHHHHHHHHHHcC---cHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCC--
Confidence 62 456789999999999974 889999999999999999999999 99999999999999986432
Q ss_pred CCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc
Q 008257 396 TKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV 475 (572)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~ 475 (572)
.+...++++.|+|++|+++|++.+++++..++.+|.++...++
T Consensus 391 -------------------------------------~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 391 -------------------------------------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433 (510)
T ss_dssp -------------------------------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 1233457899999999999999999999999999999986432
Q ss_pred ---cchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257 476 ---DIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT 519 (572)
Q Consensus 476 ---~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~ 519 (572)
........|.++||+..|-++. .|.+++++++|..+|.++|..
T Consensus 434 ~~~~~~~~~~~iee~ggl~~ie~Lq-~~~n~~i~~~A~~iie~yf~~ 479 (510)
T 3ul1_B 434 KLGETEKLSIMIEECGGLDKIEALQ-RHENESVYKASLNLIEKYFSV 479 (510)
T ss_dssp TTTCHHHHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHHHHCC-
T ss_pred hccchHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHCCC
Confidence 1223456789999999986665 799999999999999999965
No 6
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.6e-42 Score=375.56 Aligned_cols=406 Identities=17% Similarity=0.200 Sum_probs=338.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhccC--cchHHHHHHcCCcHHHHHHHcc-CCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH
Q 008257 3 SSKSENLLTVEKAEKTLANLEKC--ENNVRQMAENGRLQPLLTQILE-GPQETKLSLAAFLGDLAL-NSDVKVLVARTVG 78 (572)
Q Consensus 3 ~~~s~~~~~~~~A~~~L~~L~~~--~~n~~~i~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~ 78 (572)
+++|+|++.+..|+..++.|-+. ...+..+++.|+||+|+++|+. .++.+|.+|+++|++++. +++++..+.+.|+
T Consensus 84 ~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Ga 163 (529)
T 3tpo_A 84 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 163 (529)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 46899999999999999887543 3348899999999999999975 458899999999999998 5677888888888
Q ss_pred -HHHHHhcccCCHHHHHHHHHHHHHhhcCC-CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCC
Q 008257 79 -SCLINIMKSGNMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDF 156 (572)
Q Consensus 79 -~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~-~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~ 156 (572)
|+|+.+|+++++++++.|+++|+||+.+. +++..+++.|++++|+.+|.....+.....+++.++|+|.|++.+....
T Consensus 164 ip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~ 243 (529)
T 3tpo_A 164 IPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPA 243 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccch
Confidence 99999999999999999999999999865 5688888999999999999754211112345677888888887653211
Q ss_pred CccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHH
Q 008257 157 DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLA 236 (572)
Q Consensus 157 ~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 236 (572)
. ......|++|.|+.+|.+++++++..
T Consensus 244 ~-----------------------------------------------------~~~~~~~~lp~L~~LL~~~~~~v~~~ 270 (529)
T 3tpo_A 244 P-----------------------------------------------------PLDAVEQILPTLVRLLHHNDPEVLAD 270 (529)
T ss_dssp C-----------------------------------------------------CHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred h-----------------------------------------------------hHHHHhhHHHHHHHHhcCCcHHHHHH
Confidence 1 01113568999999999999999999
Q ss_pred HHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhh
Q 008257 237 SIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS 316 (572)
Q Consensus 237 a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~ 316 (572)
|+|+|++++.+. .+..+.+... |+++.|+.+|.+++. .++..|+++|+|++.+++..+..+++.|+++.|+.+|.+
T Consensus 271 a~~aL~~l~~~~-~~~~~~v~~~-g~i~~Lv~lL~~~~~--~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~ 346 (529)
T 3tpo_A 271 SCWAISYLTDGP-NERIEMVVKK-GVVPQLVKLLGATEL--PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN 346 (529)
T ss_dssp HHHHHHHHHSSC-HHHHHHHHTT-TCHHHHHHHHTCSCH--HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC
T ss_pred HHHHHHHhhhhh-hhhHHHHHhc-cchHHHHHHhcCCCh--hHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC
Confidence 999999999874 3444566666 999999999999885 899999999999999888998999999999999999986
Q ss_pred hccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccC
Q 008257 317 IQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLT 396 (572)
Q Consensus 317 ~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~ 396 (572)
. ...+++.++|+|++++.+ +++.+..+.+.|++|+|+.+|.++ +..+|+.|+|+|+|++.+..
T Consensus 347 ~----------~~~i~~~a~~aL~nl~~~---~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~--- 409 (529)
T 3tpo_A 347 P----------KTNIQKEATWTMSNITAG---RQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGT--- 409 (529)
T ss_dssp S----------SHHHHHHHHHHHHHHHTS---CHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSC---
T ss_pred C----------CHHHHHHHHHHHHHHhcc---cHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCC---
Confidence 2 456788999999999974 889999999999999999999999 99999999999999986431
Q ss_pred CCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc-
Q 008257 397 KLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV- 475 (572)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~- 475 (572)
.++..++++.|+|++|++||++.+++++..++.+|.++...++
T Consensus 410 ------------------------------------~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~ 453 (529)
T 3tpo_A 410 ------------------------------------VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 453 (529)
T ss_dssp ------------------------------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred ------------------------------------HHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHh
Confidence 1233457899999999999999999999999999999985332
Q ss_pred --cchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257 476 --DIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT 519 (572)
Q Consensus 476 --~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~ 519 (572)
........|.++||+..|-.+. .|.+++++++|..+|+++|..
T Consensus 454 ~~~~~~~~~~iee~ggl~~ie~Lq-~~~n~~i~~~A~~iie~yf~~ 498 (529)
T 3tpo_A 454 LGETEKLSIMIEECGGLDKIEALQ-RHENESVYKASLNLIEKYFSV 498 (529)
T ss_dssp TTCHHHHHHHHHHTTCHHHHTGGG-GCSSHHHHHHHHHHHHHHC--
T ss_pred ccChHHHHHHHHHCCcHHHHHHHH-cCCCHHHHHHHHHHHHHHCCC
Confidence 1223456789999999997766 799999999999999999965
No 7
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=4.3e-42 Score=387.52 Aligned_cols=479 Identities=17% Similarity=0.181 Sum_probs=403.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCcchHHHHHHc-CCcHHHHHHHccC-CHHHHHHHHHHHHHhccCcchhHHHHhhhH-H
Q 008257 3 SSKSENLLTVEKAEKTLANLEKCENNVRQMAEN-GRLQPLLTQILEG-PQETKLSLAAFLGDLALNSDVKVLVARTVG-S 79 (572)
Q Consensus 3 ~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~-g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~ 79 (572)
+++++|+.+++.|+.+|.+|+..+.++..+++. |++++|++.|+++ +.++|..|+.+|.+++.+++++..+.+.|+ |
T Consensus 158 lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~ 237 (780)
T 2z6g_A 158 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIP 237 (780)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHH
Confidence 356789999999999999999988888888855 8999999999866 889999999999999998888888888888 9
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHhhcCC-CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257 80 CLINIMKSGNMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS 158 (572)
Q Consensus 80 ~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~-~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~ 158 (572)
.|+++|+++++.+|..|+++|.+|+.+. ..+..+++.|+||.|+++|.+. +..+++.++.+|.+++..+.+.
T Consensus 238 ~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~-----~~~v~~~a~~aL~~La~~~~e~-- 310 (780)
T 2z6g_A 238 ALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-----NVKFLAITTDCLQILAYGNQES-- 310 (780)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC-----CHHHHHHHHHHHHHHHTTCHHH--
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC-----CHHHHHHHHHHHHHHhcCChHH--
Confidence 9999999999999999999999999875 4566777999999999999864 2678999999999998643211
Q ss_pred cccCCCccccchhhhHHHHHHHHhcCChh-HHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHH
Q 008257 159 ITVGPDNQTLVSEDIVHNLLHLISNTGPT-IECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLAS 237 (572)
Q Consensus 159 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~-~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a 237 (572)
...+...++++.|+++|++.+++ .+..++++|.+++..+. .+..+.+.|+++.|+.++.+++..++..|
T Consensus 311 ------~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~----~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a 380 (780)
T 2z6g_A 311 ------KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS----NKPAIVEAGGMQALGLHLTDPSQRLVQNC 380 (780)
T ss_dssp ------HHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT----HHHHHHHTTHHHHHGGGTTCSCHHHHHHH
T ss_pred ------HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH----HHHHHHHhchHHHHHHHHcCCchHHHHHH
Confidence 12345668899999999976654 56688999999997653 57788899999999999999999999999
Q ss_pred HHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhh
Q 008257 238 IELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSI 317 (572)
Q Consensus 238 ~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~ 317 (572)
+++|.+|+...... .... ++++.|+++|.+++. .++..|+++|++|+.++++.++.+++.|+++.|+.+|.+.
T Consensus 381 ~~~L~~L~~~~~~~----~~~~-~~i~~Lv~lL~~~d~--~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~ 453 (780)
T 2z6g_A 381 LWTLRNLSDAATKQ----EGME-GLLGTLVQLLGSDDI--NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 453 (780)
T ss_dssp HHHHHHHHTTCTTC----SCCH-HHHHHHHHHTTCSCH--HHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhh----hhhh-hHHHHHHHHHcCCCH--HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHcc
Confidence 99999999764321 1112 689999999998775 8999999999999998888889999999999999999862
Q ss_pred ccCCCCCCcchhhHHHHHHHHHHHHhccCCCChH---HHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccc
Q 008257 318 QLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPD---AIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKN 394 (572)
Q Consensus 318 ~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~ 394 (572)
. ....+++.++++|.+++.. +++ .+..+++.|++|.|+++|.++..+.+++.|+++|+|++.+..
T Consensus 454 ~--------~~~~v~~~Al~aL~nL~~~---~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~- 521 (780)
T 2z6g_A 454 G--------DREDITEPAICALRHLTSR---HQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA- 521 (780)
T ss_dssp T--------TCHHHHHHHHHHHHHTTSS---STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH-
T ss_pred C--------CHHHHHHHHHHHHHHHHhc---CchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH-
Confidence 1 1236789999999999853 333 466889999999999999988345999999999999986432
Q ss_pred cCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCC------------------
Q 008257 395 LTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTN------------------ 456 (572)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~------------------ 456 (572)
+...+++.|+|++|+++|.+.+
T Consensus 522 ----------------------------------------~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~ 561 (780)
T 2z6g_A 522 ----------------------------------------NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 561 (780)
T ss_dssp ----------------------------------------HHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCST
T ss_pred ----------------------------------------HHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhc
Confidence 1224678999999999997533
Q ss_pred ----HhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCc
Q 008257 457 ----EKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNV 532 (572)
Q Consensus 457 ----~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~ 532 (572)
++++..++.+|++|+.+. .....+.+.|+|++|+++| .++++.++..|+.+|.++..+++.+..+...+++
T Consensus 562 ~~~~~~v~~~a~~aL~~La~~~----~~~~~l~~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i 636 (780)
T 2z6g_A 562 GVRMEEIVEACTGALHILARDI----HNRIVIRGLNTIPLFVQLL-YSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 636 (780)
T ss_dssp TCCHHHHHHHHHHHHHHHTTSH----HHHHHHHHTCCHHHHHHGG-GCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCH
T ss_pred ccChHHHHHHHHHHHHHHhcCh----hhHHHHHHCCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCH
Confidence 457788999999998653 4467788999999999999 5999999999999999999888888888887777
Q ss_pred hHHHHHHhhcCCchhHHHHHHHHHhhcccCC
Q 008257 533 STALVDAFQHADYRTRQIAERALKHIDKIPN 563 (572)
Q Consensus 533 ~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~ 563 (572)
. .|++++++.++.+|+.|++||.+|.....
T Consensus 637 ~-~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 637 A-PLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp H-HHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred H-HHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 5 99999999999999999999999998654
No 8
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=3.5e-41 Score=360.32 Aligned_cols=395 Identities=20% Similarity=0.212 Sum_probs=301.7
Q ss_pred HcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcC--CCc
Q 008257 34 ENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSC--EPS 109 (572)
Q Consensus 34 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~--~~~ 109 (572)
+.+.|++||.+|.++++++|.+|+++|.+++. ++++|..|.+.|+ |+||++|+++++++|+.|+++|+||+.. ++|
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 45789999999999999999999999999997 7899999999888 9999999999999999999999999984 788
Q ss_pred HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHH
Q 008257 110 AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIE 189 (572)
Q Consensus 110 ~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q 189 (572)
+..|+++|+||+|+++|++.. +..+++.|+++|+||+.++. +...+. .++|+.|++++..+..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~----~~~~~e~aa~aL~nLS~~~~---------~k~~I~-~~alp~Lv~LL~~p~s--- 188 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKAR----DMDLTEVITGTLWNLSSHDS---------IKMEIV-DHALHALTDEVIIPHS--- 188 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCC----SHHHHHHHHHHHHHHTTSGG---------GHHHHH-HHTHHHHHHHTHHHHH---
T ss_pred HHHHHHcCCHHHHHHHHcCCC----CHHHHHHHHHHHHHHhCCch---------hhHHHH-hccHHHHHHHHhcccc---
Confidence 999999999999999998732 36789999999999986421 011122 2334444444311000
Q ss_pred HHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhh
Q 008257 190 CKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRV 269 (572)
Q Consensus 190 ~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~l 269 (572)
...... .. . -.+....+++++++|+++|+||+.+. .+.++.+++..|.++.||.+
T Consensus 189 --------g~~~~~-----~~-----~------~k~~~~~d~~V~~nAa~~L~NLs~~~-~~~R~~i~~~~Gli~~LV~~ 243 (584)
T 3l6x_A 189 --------GWEREP-----NE-----D------CKPRHIEWESVLTNTAGCLRNVSSER-SEARRKLRECDGLVDALIFI 243 (584)
T ss_dssp --------CCC--------------------------CCCCHHHHHHHHHHHHHHTSSC-HHHHHHHHHSTTHHHHHHHH
T ss_pred --------cccccc-----cc-----c------ccccccccHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCcHHHHHHH
Confidence 000000 00 0 00112346799999999999999874 34455677654667899999
Q ss_pred hccC----CCChHHHHHHHHHHhcCCCCcH-------------------------HHHHHHHhCCChHHHHHHHhhhccC
Q 008257 270 ISEN----VGISKEQAAAVGLLAELPERDL-------------------------GLTRQMLDEGAFGLIFSRVKSIQLG 320 (572)
Q Consensus 270 L~~~----~~~~~~~~~A~~~L~~L~~~~~-------------------------~~~~~l~~~g~l~~Lv~lL~~~~~~ 320 (572)
|.+. +.....+..|+++|+||+..-. ...+.+++.++++.|+.+|+..
T Consensus 244 L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s--- 320 (584)
T 3l6x_A 244 VQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES--- 320 (584)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHC---
T ss_pred HHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccC---
Confidence 9752 1112788999999999876411 0112344556678889999752
Q ss_pred CCCCCcchhhHHHHHHHHHHHHhccCCCC---hHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCC
Q 008257 321 ETRGSRFVTPFLEGLLSVLARVTFVLSDE---PDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTK 397 (572)
Q Consensus 321 ~~~~~~~~~~~~e~a~~aL~~l~~~~~~~---~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~ 397 (572)
....++|+|+++|.+++.+ .. ..++..+.+.|++|.|++||.++ ++.+++.|+++|.||+.+..+
T Consensus 321 ------~~~~v~E~Aa~AL~nL~ag--~~~~~~~~~~~v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~~~~--- 388 (584)
T 3l6x_A 321 ------KTPAILEASAGAIQNLCAG--RWTYGRYIRSALRQEKALSAIADLLTNE-HERVVKAASGALRNLAVDARN--- 388 (584)
T ss_dssp ------CCHHHHHHHHHHHHHHHSS--CSHHHHHHHHHHTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCSC---
T ss_pred ------CCHHHHHHHHHHHHHHHcC--CccccHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCChhH---
Confidence 2467899999999999864 22 24556778889999999999999 999999999999999864321
Q ss_pred CCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCC--------CHhHHHHHHHHHHH
Q 008257 398 LPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHT--------NEKVVEASLAALST 469 (572)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~--------~~~v~~~A~~aL~~ 469 (572)
. .+++.|+||+||++|.++ +++++..|+++|.+
T Consensus 389 --------------------------------------~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~N 429 (584)
T 3l6x_A 389 --------------------------------------K-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINE 429 (584)
T ss_dssp --------------------------------------H-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHH
T ss_pred --------------------------------------H-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHH
Confidence 1 244789999999999876 46889999999999
Q ss_pred hhhcCccchhhHHHHHhcCChHHHHHHHhhcC--CHHHHHHHHHHHHHHHcchhhhhhhcC
Q 008257 470 VIDDGVDIEQGVMVLCEAQGIKPILDVLLEKR--TENLQRRAVWVVERILRTDDIAYEVSG 528 (572)
Q Consensus 470 l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~ 528 (572)
|+..+. .+...|.++|||++|+++++ ++ ++.+++.|+++|.++..+.+.+..|..
T Consensus 430 L~a~~~---~~~~~I~~~g~I~~Lv~LL~-s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk 486 (584)
T 3l6x_A 430 VIAENL---EAAKKLRETQGIEKLVLINK-SGNRSEKEVRAAALVLQTIWGYKELRKPLEK 486 (584)
T ss_dssp HHTTCH---HHHHHHHHTTHHHHHHHHHT-CSSSCHHHHHHHHHHHHHHHTSHHHHHHHHT
T ss_pred HhcCCH---HHHHHHHHCCChHHHHHHHh-CCCCChHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 986543 56788999999999999995 54 889999999999999999888877766
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.5e-40 Score=358.17 Aligned_cols=406 Identities=13% Similarity=0.162 Sum_probs=342.2
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhcCCCc--HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257 78 GSCLINIMKSGNMQAREAALKALNQISSCEPS--AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD 155 (572)
Q Consensus 78 ~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~--~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~ 155 (572)
++.||+.|+|++++.|..|+.++++|.+.+.| .+.++++|+||+||++|++. .++.+|..|+|+|+||++++.+
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~----~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT----DCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT----TCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC----CCHHHHHHHHHHHHHHhcCCHH
Confidence 48999999999999999999999998876555 78999999999999999753 2378999999999999975432
Q ss_pred CCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCH----
Q 008257 156 FDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQN---- 231 (572)
Q Consensus 156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~---- 231 (572)
. ...++..|+||.|+++|.++++++++.|+++|.+++.+. +..+..+.+.|++++|+.+|..++.
T Consensus 135 ~--------~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~---~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~ 203 (510)
T 3ul1_B 135 Q--------TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG---SAFRDLVIKHGAIDPLLALLAVPDLSTLA 203 (510)
T ss_dssp H--------HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC---HHHHHHHHHTTCHHHHHHHTCSSCGGGSC
T ss_pred H--------HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHcCChHHHHHHHHhccchhhh
Confidence 2 245778899999999999999999999999999999876 3678899999999999999987652
Q ss_pred -HHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHH
Q 008257 232 -DLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLI 310 (572)
Q Consensus 232 -~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~L 310 (572)
.++..++++|++++.+..... ...... |+++.|+++|.+++. +++..|+++|++|+.++.+..+.+++.|++|.|
T Consensus 204 ~~~~~~a~~~L~nl~~~~~~~~-~~~~~~-~~lp~L~~LL~~~~~--~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~L 279 (510)
T 3ul1_B 204 CGYLRNLTWTLSNLCRNKNPAP-PLDAVE-QILPTLVRLLHHNDP--EVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279 (510)
T ss_dssp HHHHHHHHHHHHHHHCCCSSCC-CHHHHH-HHHHHHHHHTTCSCH--HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHHhhcccchh-HHHHHH-hHHHHHHHHHhcCCH--HHHHHHHHHHHHHhhchhhhHHHHHhcccchhh
Confidence 468899999999987532211 112222 789999999999886 899999999999999888888889999999999
Q ss_pred HHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 008257 311 FSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSL 390 (572)
Q Consensus 311 v~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~ 390 (572)
+.+|.+ ....++..++.+|.+++.. ++.....+.+.|++|.|+.+|+++ ++.+|+.|+|+|.|++.
T Consensus 280 v~lL~~----------~~~~v~~~al~aL~nl~~~---~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 280 VKLLGA----------TELPIVTPALRAIGNIVTG---TDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITA 345 (510)
T ss_dssp HHHHTC----------SCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTT
T ss_pred hhhhcC----------CChhhhhHHHHHHHHhhcC---CHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHc
Confidence 999986 2456789999999999864 788888999999999999999998 99999999999999986
Q ss_pred hccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHh
Q 008257 391 ESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTV 470 (572)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l 470 (572)
.... ....+++.|++|+|+++|.+++.+++..|++||+++
T Consensus 346 ~~~~----------------------------------------~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl 385 (510)
T 3ul1_B 346 GRQD----------------------------------------QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 385 (510)
T ss_dssp SCHH----------------------------------------HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CcHH----------------------------------------HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4321 223467899999999999999999999999999999
Q ss_pred hhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc-------hhhhhhhcCCCCchHHHHHHhhcC
Q 008257 471 IDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT-------DDIAYEVSGDPNVSTALVDAFQHA 543 (572)
Q Consensus 471 ~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~-------~~~~~~~~~~~~~~~~Lv~ll~~~ 543 (572)
+.++. ......+.+.|+|++|+++| .++|+.++..++++|.+|+.. +.++..+...+|+. .|-.|..+.
T Consensus 386 ~~~~~--~~~~~~L~~~g~i~~L~~LL-~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~-~ie~Lq~~~ 461 (510)
T 3ul1_B 386 TSGGT--VEQIVYLVHCGIIEPLMNLL-SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD-KIEALQRHE 461 (510)
T ss_dssp HHHCC--HHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHH-HHHHGGGCS
T ss_pred HccCC--HHHHHHHHHCCCHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHH-HHHHHHcCC
Confidence 97653 24467799999999999999 599999999999999999853 23444566666774 777777889
Q ss_pred CchhHHHHHHHHHhhcc
Q 008257 544 DYRTRQIAERALKHIDK 560 (572)
Q Consensus 544 ~~~~~~~Aa~aL~~L~~ 560 (572)
+.+++++|..+|.+.+.
T Consensus 462 n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 462 NESVYKASLNLIEKYFS 478 (510)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHCC
Confidence 99999999999988764
No 10
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.9e-40 Score=359.32 Aligned_cols=449 Identities=14% Similarity=0.167 Sum_probs=361.5
Q ss_pred CCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC-cchhHHHHhhhH-HHHHH
Q 008257 6 SENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN-SDVKVLVARTVG-SCLIN 83 (572)
Q Consensus 6 s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~-~~~k~~i~~~g~-~~Lv~ 83 (572)
++|+.+++.|+.+|.+|+.+++++..+.+.|++++|+++|++++++++..++++|.+++.+ ++.+..+.+.|+ |.|++
T Consensus 71 ~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 150 (529)
T 1jdh_A 71 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 150 (529)
T ss_dssp CCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHH
Confidence 4589999999999999999988999999999999999999999999999999999999984 567778888888 99999
Q ss_pred hcccCCHHHHHHHHHHHHHhhcC-CCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccC
Q 008257 84 IMKSGNMQAREAALKALNQISSC-EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVG 162 (572)
Q Consensus 84 lL~s~~~~~~~~A~~aL~~Ls~~-~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~ 162 (572)
+|++++.+++..++.+|.+|+.. ++++..+++.|++|.|+++|++.+ +...++.++.+|.|++.+...
T Consensus 151 ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~----~~~~~~~a~~~L~~l~~~~~~------- 219 (529)
T 1jdh_A 151 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT----YEKLLWTTSRVLKVLSVCSSN------- 219 (529)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTTSTTH-------
T ss_pred HHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC----hHHHHHHHHHHHHHHhcCccc-------
Confidence 99999999999999999999974 567888899999999999998742 367788899999999864321
Q ss_pred CCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHH
Q 008257 163 PDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQ 242 (572)
Q Consensus 163 ~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~ 242 (572)
...+...|+++.|++++.+++++++..++++|.+++....... ...|+++.|+.++.+++++++..|+++|+
T Consensus 220 --~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 291 (529)
T 1jdh_A 220 --KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE------GMEGLLGTLVQLLGSDDINVVTCAAGILS 291 (529)
T ss_dssp --HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS------CCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred --HHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH------HHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2356678999999999999999999999999999998754211 12478999999999999999999999999
Q ss_pred HcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHH---HHHHHHhCCChHHHHHHHhhhcc
Q 008257 243 NLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLG---LTRQMLDEGAFGLIFSRVKSIQL 319 (572)
Q Consensus 243 ~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~---~~~~l~~~g~l~~Lv~lL~~~~~ 319 (572)
+|+.+. .+..+.+.+. |+++.|+++|.+.++...++..|+++|+|++.++++ .+..+.+.|++|.|+.+|.+..
T Consensus 292 ~L~~~~-~~~~~~~~~~-~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~- 368 (529)
T 1jdh_A 292 NLTCNN-YKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS- 368 (529)
T ss_dssp HHTTTC-HHHHHHHHHT-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC-
T ss_pred HHhcCC-HHHHHHHHHc-CChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhcccc-
Confidence 999874 3444567776 999999999986432248999999999999875433 4678899999999999998621
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHH--hhhhccccCC
Q 008257 320 GETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALEN--LSLESKNLTK 397 (572)
Q Consensus 320 ~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~--ls~~~~~~~~ 397 (572)
...+++.++++|.+++. ++..+..+.+.|++|.|+++|+++ ++++|+.|+|++.| +......
T Consensus 369 --------~~~v~~~a~~~l~nl~~----~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~l~n~~~~~~~~~--- 432 (529)
T 1jdh_A 369 --------HWPLIKATVGLIRNLAL----CPANHAPLREQGAIPRLVQLLVRA-HQDTQRRTSMGGTQQQFVEGVRM--- 432 (529)
T ss_dssp --------CHHHHHHHHHHHHHHTT----SGGGHHHHHHTTHHHHHHHHHHHH-HHHHC-----------CBTTBCH---
T ss_pred --------chHHHHHHHHHHHHHhc----ChhhhHHHHHcCCHHHHHHHHHHH-hHHHHHHHhcccCchhhhccccH---
Confidence 24678899999999994 566778899999999999999998 89999999999988 2211000
Q ss_pred CCCCCCCCCCccccc-cccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCcc
Q 008257 398 LPELPPSGFCASIFP-CFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVD 476 (572)
Q Consensus 398 ~~~~~~~~~~~~~~~-~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~ 476 (572)
..+.. ++ ..+|.. ..+..+...+.+.|++++|+++|.+++++++..|+.+|++|+.++
T Consensus 433 ----------~~i~~~~~------~al~~L---~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~-- 491 (529)
T 1jdh_A 433 ----------EEIVEGCT------GALHIL---ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK-- 491 (529)
T ss_dssp ----------HHHHHHHH------HHHHHH---TTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH--
T ss_pred ----------HHHHHHHH------HHHHHH---hcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCH--
Confidence 00000 00 001110 012244556889999999999999999999999999999998653
Q ss_pred chhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 008257 477 IEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERI 516 (572)
Q Consensus 477 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l 516 (572)
.....|.+.||++.|.+++ .++++.++++|.++|.++
T Consensus 492 --~~~~~i~~~~~~~~L~~l~-~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 492 --EAAEAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp --HHHHHHHHTTCHHHHHHGG-GCSSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHcCChHHHHHHh-cCCCHHHHHHHHHHHHhc
Confidence 4577899999999999999 699999999999999887
No 11
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=3.3e-41 Score=358.00 Aligned_cols=366 Identities=14% Similarity=0.133 Sum_probs=294.3
Q ss_pred CcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcC-CCcHHHH
Q 008257 37 RLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSC-EPSAKVL 113 (572)
Q Consensus 37 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~-~~~~~~i 113 (572)
.+++|+++|+++++++|..|+++|.+++. ++++|..+.+.|+ |+||++|+++++++|+.|+++|+||+.+ ++++..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 47999999999999999999999999987 4566878888888 9999999999999999999999999986 7889999
Q ss_pred HHcCChHHHHHHHh-ccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHH
Q 008257 114 IHAGILPPLVKDLF-TVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKL 192 (572)
Q Consensus 114 v~~G~i~~Lv~lL~-s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a 192 (572)
+++|+||+|+++|+ ++ ++++++.|+|+|+||+.++.
T Consensus 83 ~~~G~i~~Lv~lL~~~~-----~~~~~~~a~~aL~nLa~~~~-------------------------------------- 119 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTG-----NAEIQKQLTGLLWNLSSTDE-------------------------------------- 119 (457)
T ss_dssp HHTTCHHHHHHHHTTCC-----CHHHHHHHHHHHHHHHTSSS--------------------------------------
T ss_pred HHcCCHHHHHHHHhhCC-----CHHHHHHHHHHHHHHhcCHH--------------------------------------
Confidence 99999999999998 43 37899999999999987521
Q ss_pred HHHHHHccCCCCccHHHHHHHHhcCChHHHHHHh--------cC--------CCHHHHHHHHHHHHHcCCCCChhHHHHH
Q 008257 193 LQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFV--------EA--------PQNDLRLASIELIQNLSPHMGHELADAL 256 (572)
Q Consensus 193 ~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL--------~~--------~~~~v~~~a~~~L~~Ls~~~~~~~~~~i 256 (572)
.+..+.+ |++|+|+.+| .+ .+++++.+|+|+|+||+.+ ++..+.+
T Consensus 120 ----------------~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~--~~~~~~i 180 (457)
T 1xm9_A 120 ----------------LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA--DAGRQTM 180 (457)
T ss_dssp ----------------THHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS--HHHHHHH
T ss_pred ----------------hHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC--HHHHHHH
Confidence 1334445 6666666666 22 3466777999999999987 4455566
Q ss_pred hcccCChhhHHhhhcc------CCCChHHHHHHHHHHhcCCCC-------------------------------------
Q 008257 257 RGAVGQLGSLIRVISE------NVGISKEQAAAVGLLAELPER------------------------------------- 293 (572)
Q Consensus 257 ~~~~g~l~~Lv~lL~~------~~~~~~~~~~A~~~L~~L~~~------------------------------------- 293 (572)
.+.+|+++.|+.+|.+ .+. .....|+++|.+|+..
T Consensus 181 ~~~~g~i~~Lv~lL~~~~~~~~~~~--~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (457)
T 1xm9_A 181 RNYSGLIDSLMAYVQNCVAASRCDD--KSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMM 258 (457)
T ss_dssp TTSTTHHHHHHHHHHHHHHHTCTTC--TTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---------------------
T ss_pred HHcCCCHHHHHHHHHhhccccCCch--HHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhh
Confidence 6533899999999986 232 5666778888887631
Q ss_pred -------------cHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCCh---HH-HHHH
Q 008257 294 -------------DLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEP---DA-IALC 356 (572)
Q Consensus 294 -------------~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~---~~-~~~i 356 (572)
++...+.+++.|+++.|+.+|.+.+ .+.++|.++|+|++++.+ +++ .. +..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~---------~~~~~e~a~~aL~nl~~~--~~~~~~~~~~~~v 327 (457)
T 1xm9_A 259 NNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK---------KDATLEACAGALQNLTAS--KGLMSSGMSQLIG 327 (457)
T ss_dssp -------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHTTC--SSSHHHHHHHHHH
T ss_pred hccccCCccccccCchHHHHHhCcchHHHHHHHHhhcC---------CHHHHHHHHHHHHHhccC--cCcchHHHHHHHH
Confidence 0112245677889999999998732 467899999999999975 333 23 4455
Q ss_pred HHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccch
Q 008257 357 CEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKET 436 (572)
Q Consensus 357 ~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 436 (572)
.+.|++|+|+++|.++ ++++|+.|+|+|.|++.+.. +
T Consensus 328 ~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~~-----------------------------------------~- 364 (457)
T 1xm9_A 328 LKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHPL-----------------------------------------L- 364 (457)
T ss_dssp TTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSGG-----------------------------------------G-
T ss_pred HHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCHH-----------------------------------------H-
Confidence 6799999999999999 99999999999999986431 1
Q ss_pred hhhhhccchHHHHHhhcCCC------HhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcC-CHHHHHHH
Q 008257 437 FCLLEGHAVEKLIALLDHTN------EKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKR-TENLQRRA 509 (572)
Q Consensus 437 ~~l~~~g~i~~Lv~lL~~~~------~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~~~~~~a 509 (572)
..++..|+|++||++|.+++ ++++..++++|+++...+. .....+.++||+++|++++ .++ ++.++++|
T Consensus 365 ~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~---~~~~~i~~~g~l~~L~~L~-~~~~~~~i~~~A 440 (457)
T 1xm9_A 365 HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP---QLAKQYFSSSMLNNIINLC-RSSASPKAAEAA 440 (457)
T ss_dssp HHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCT---HHHHHHCCHHHHHHHHHHH-HCTTCHHHHHHH
T ss_pred HHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCH---HHHHHHHHcCCHHHHHHHH-cCCCcHHHHHHH
Confidence 12456789999999999864 4789999999999987554 4678899999999999999 588 99999999
Q ss_pred HHHHHHHHcchhhhh
Q 008257 510 VWVVERILRTDDIAY 524 (572)
Q Consensus 510 ~~~l~~l~~~~~~~~ 524 (572)
.++|.+++.+.+.+.
T Consensus 441 ~~~L~~~~~~~~l~~ 455 (457)
T 1xm9_A 441 RLLLSDMWSSKELQG 455 (457)
T ss_dssp HHHHHTTSSSTTCSS
T ss_pred HHHHHHHHcchhhhc
Confidence 999999998876653
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=2.4e-39 Score=350.66 Aligned_cols=406 Identities=13% Similarity=0.166 Sum_probs=342.3
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhcCCCc--HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257 78 GSCLINIMKSGNMQAREAALKALNQISSCEPS--AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD 155 (572)
Q Consensus 78 ~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~--~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~ 155 (572)
++.+|+.+.|++++.|..|+.++++|.+.+.+ .+.+++.|+||+||++|... .++.+|..|+|+|+||+.++..
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~----~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT----DCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT----TCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC----CCHHHHHHHHHHHHHHHcCCHH
Confidence 48999999999999999999999998765444 68899999999999999753 2478999999999999976432
Q ss_pred CCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCC-----
Q 008257 156 FDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ----- 230 (572)
Q Consensus 156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~----- 230 (572)
. ...+...|+||.|+.+|.++++++++.|+++|.+++.+. +..+..+.+.|++++|+.+|..++
T Consensus 154 ~--------~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~---~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~ 222 (529)
T 3tpo_A 154 Q--------TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG---SAFRDLVIKHGAIDPLLALLAVPDLSTLA 222 (529)
T ss_dssp H--------HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC---HHHHHHHHHTTCHHHHHHTTCSSCGGGSC
T ss_pred H--------HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC---HHHHHHHHHcCCcHHHHHHHhccchhHhH
Confidence 2 135778899999999999999999999999999999875 367889999999999999998764
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHH
Q 008257 231 NDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLI 310 (572)
Q Consensus 231 ~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~L 310 (572)
..++..++++|++++.+..... ...... |++|.|+++|.++++ +++..|+++|++++.++.+..+.+++.|++|.|
T Consensus 223 ~~~~~~a~~~L~nl~~~~~~~~-~~~~~~-~~lp~L~~LL~~~~~--~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~L 298 (529)
T 3tpo_A 223 CGYLRNLTWTLSNLCRNKNPAP-PLDAVE-QILPTLVRLLHHNDP--EVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 298 (529)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCC-CHHHHH-HHHHHHHHHTTSSCH--HHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhcccchh-hHHHHh-hHHHHHHHHhcCCcH--HHHHHHHHHHHHhhhhhhhhHHHHHhccchHHH
Confidence 2468899999999987632211 112222 789999999999886 899999999999999888888889999999999
Q ss_pred HHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 008257 311 FSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSL 390 (572)
Q Consensus 311 v~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~ 390 (572)
+.+|.+ ....+++.++.+|.+++.+ ++.....+.+.|++|.|+.+|+++ ++.+|+.|+|+|+|++.
T Consensus 299 v~lL~~----------~~~~v~~~a~~aL~nl~~~---~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~ 364 (529)
T 3tpo_A 299 VKLLGA----------TELPIVTPALRAIGNIVTG---TDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITA 364 (529)
T ss_dssp HHHHTC----------SCHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHT
T ss_pred HHHhcC----------CChhHHHHHHHHHHHHHcc---chHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhc
Confidence 999986 2466788999999999874 788888999999999999999998 99999999999999986
Q ss_pred hccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHh
Q 008257 391 ESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTV 470 (572)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l 470 (572)
+... ....+++.|++|+|+.+|.+++.+++..|++||+++
T Consensus 365 ~~~~----------------------------------------~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl 404 (529)
T 3tpo_A 365 GRQD----------------------------------------QIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNY 404 (529)
T ss_dssp SCHH----------------------------------------HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred ccHH----------------------------------------HHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4331 122367899999999999999999999999999999
Q ss_pred hhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc-------hhhhhhhcCCCCchHHHHHHhhcC
Q 008257 471 IDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT-------DDIAYEVSGDPNVSTALVDAFQHA 543 (572)
Q Consensus 471 ~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~-------~~~~~~~~~~~~~~~~Lv~ll~~~ 543 (572)
+.++. .+....+.+.|+|++|+++| .++|+.+...++++|.+|+.. +.+...+...+++. .|-.|..+.
T Consensus 405 ~~~~~--~~~~~~l~~~g~i~~L~~LL-~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~-~ie~Lq~~~ 480 (529)
T 3tpo_A 405 TSGGT--VEQIVYLVHCGIIEPLMNLL-SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD-KIEALQRHE 480 (529)
T ss_dssp HHHSC--HHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHH-HHTGGGGCS
T ss_pred HcCCC--HHHHHHHHHCcCHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHH-HHHHHHcCC
Confidence 97643 24467799999999999999 599999999999999999853 23444566667775 788888899
Q ss_pred CchhHHHHHHHHHhhcc
Q 008257 544 DYRTRQIAERALKHIDK 560 (572)
Q Consensus 544 ~~~~~~~Aa~aL~~L~~ 560 (572)
+.+++++|..+|...+.
T Consensus 481 n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 481 NESVYKASLNLIEKYFS 497 (529)
T ss_dssp SHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHCC
Confidence 99999999999988764
No 13
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.5e-39 Score=356.94 Aligned_cols=452 Identities=14% Similarity=0.153 Sum_probs=363.2
Q ss_pred CCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHH
Q 008257 6 SENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLIN 83 (572)
Q Consensus 6 s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~ 83 (572)
++++.++..|+.+|.+|+..++++..+.+.|++++|+++|+++++.+|..|+++|.+++. .++.+..+.+.|+ |.|++
T Consensus 68 ~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~ 147 (644)
T 2z6h_A 68 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 147 (644)
T ss_dssp CCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHH
Confidence 458999999999999999998899999999999999999999999999999999999998 4567778887887 99999
Q ss_pred hcccCCHHHHHHHHHHHHHhhc-CCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccC
Q 008257 84 IMKSGNMQAREAALKALNQISS-CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVG 162 (572)
Q Consensus 84 lL~s~~~~~~~~A~~aL~~Ls~-~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~ 162 (572)
+|++++++++..++.+|.+|+. +++++..+++.|+++.|+++|.+.. ....++.++.+|.|++.+..
T Consensus 148 lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~----~~~~~~~a~~~L~nLs~~~~-------- 215 (644)
T 2z6h_A 148 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT----YEKLLWTTSRVLKVLSVCSS-------- 215 (644)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC----CHHHHHHHHHHHHHHTTCTT--------
T ss_pred HHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC----hHHHHHHHHHHHHHHhcCcc--------
Confidence 9999999999999999999996 6778889999999999999998642 36788999999999986432
Q ss_pred CCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHH
Q 008257 163 PDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQ 242 (572)
Q Consensus 163 ~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~ 242 (572)
+...+...|+++.|++++.+++++++..++++|.+++...... . ...++++.|+.+|+++++++++.|+++|.
T Consensus 216 -~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~-~-----~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~ 288 (644)
T 2z6h_A 216 -NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-E-----GMEGLLGTLVQLLGSDDINVVTCAAGILS 288 (644)
T ss_dssp -HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC-C-----SCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred -cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh-h-----hhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1235677899999999999999999999999999999764321 1 12378999999999999999999999999
Q ss_pred HcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcH---HHHHHHHhCCChHHHHHHHhhhcc
Q 008257 243 NLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDL---GLTRQMLDEGAFGLIFSRVKSIQL 319 (572)
Q Consensus 243 ~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~---~~~~~l~~~g~l~~Lv~lL~~~~~ 319 (572)
+|+.+. .+..+.+.+. |+++.|+++|.+.++...++..|+++|++|+..++ ..+..+.+.|+++.|+.+|.+.
T Consensus 289 ~L~~~~-~~~~~~v~~~-g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~-- 364 (644)
T 2z6h_A 289 NLTCNN-YKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP-- 364 (644)
T ss_dssp HHHTTC-HHHHHHHHHT-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTT--
T ss_pred HHHcCC-HHHHHHHHHc-CCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCcc--
Confidence 999763 3444566666 99999999998744223899999999999987433 3445588999999999999862
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHH--hhhhccccCC
Q 008257 320 GETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALEN--LSLESKNLTK 397 (572)
Q Consensus 320 ~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~--ls~~~~~~~~ 397 (572)
....+++.++++|.+++. ++..++.+.+.|++|.|+++|.++ +..+|+.|+|++.+ +.......
T Consensus 365 -------~~~~v~~~a~~~L~nLa~----~~~~~~~i~~~~~i~~Lv~lL~~~-~~~vr~~a~~al~n~~~~~~~~~~-- 430 (644)
T 2z6h_A 365 -------SHWPLIKATVGLIRNLAL----CPANHAPLREQGAIPRLVQLLVRA-HQDTQRRTSMGGTQQQFVEGVRME-- 430 (644)
T ss_dssp -------CCHHHHHHHHHHHHHHTT----SGGGHHHHHHTTHHHHHHHHHHHH-HHHHTTC----------CCSSCHH--
T ss_pred -------CchHHHHHHHHHHHHHcc----CHHHHHHHHHcCCHHHHHHHHhcc-chhhhhHhhhccccchhcccccHH--
Confidence 134678899999999994 566778899999999999999997 78888888887766 22100000
Q ss_pred CCCCCCCCCCccccccccCCCccccccccccCc-cCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCcc
Q 008257 398 LPELPPSGFCASIFPCFSKQPVITGLCRLHRGL-CSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVD 476 (572)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~ 476 (572)
.+. ...|.+...+ .+..+.+.+.+.|+|++|+++|.+.+++++..|+.+|++++.+.
T Consensus 431 -----------~v~---------~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~-- 488 (644)
T 2z6h_A 431 -----------EIV---------EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK-- 488 (644)
T ss_dssp -----------HHH---------HHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH--
T ss_pred -----------HHH---------HHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH--
Confidence 000 0000000000 01234556779999999999999999999999999999999653
Q ss_pred chhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257 477 IEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT 519 (572)
Q Consensus 477 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~ 519 (572)
.....|.++||++.|.+++ .++++.+++.|+++|.++..+
T Consensus 489 --~~~~~i~~~g~l~~L~~ll-~~~~~~vr~~A~~aL~~l~~~ 528 (644)
T 2z6h_A 489 --EAAEAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRMSED 528 (644)
T ss_dssp --HHHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTT
T ss_pred --HHHHHHHHcCChhHHHHHH-cCCCHHHHHHHHHHHHHHhcc
Confidence 4577899999999999999 599999999999999999865
No 14
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=7.6e-39 Score=347.06 Aligned_cols=411 Identities=16% Similarity=0.169 Sum_probs=347.6
Q ss_pred CCcHHHHHHHccCCHHHHHHHHHHHHHhcc-Cc-chhHHHHhhhH-HHHHHhcccCC-HHHHHHHHHHHHHhhcC-CCcH
Q 008257 36 GRLQPLLTQILEGPQETKLSLAAFLGDLAL-NS-DVKVLVARTVG-SCLINIMKSGN-MQAREAALKALNQISSC-EPSA 110 (572)
Q Consensus 36 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~-~~k~~i~~~g~-~~Lv~lL~s~~-~~~~~~A~~aL~~Ls~~-~~~~ 110 (572)
..++.|+..|.+++++.|..|+++|.++.. .. +.+..+.+.|+ |.|+++|++++ +.+|..|+++|.+|+.. ++++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 458999999999999999999999999866 33 56777777777 99999999887 99999999999999986 5678
Q ss_pred HHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHH-hcCChhHH
Q 008257 111 KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLI-SNTGPTIE 189 (572)
Q Consensus 111 ~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL-~~~~~~~q 189 (572)
..+++.|+||+|+.+|.++ ++.+++.|+|+|+||+....... ..+...|+++.|+.+| .+.++.++
T Consensus 154 ~~~~~~g~i~~L~~lL~~~-----~~~v~~~a~~aL~~l~~~~~~~~--------~~i~~~g~l~~Ll~lL~~~~~~~v~ 220 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSS-----SDDVREQAVWALGNVAGDSPKCR--------DLVLANGALLPLLAQLNEHTKLSML 220 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHHHTCHHHH--------HHHHHTTCHHHHHHTCCTTCCHHHH
T ss_pred HHHHhCCcHHHHHHHhcCC-----CHHHHHHHHHHHHHHhCCChhhH--------HHHHHCCcHHHHHHHHhcCCCHHHH
Confidence 8889999999999999864 37999999999999997543211 2455678999999999 67889999
Q ss_pred HHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhh
Q 008257 190 CKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRV 269 (572)
Q Consensus 190 ~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~l 269 (572)
..++++|.+++...... ......|+++.|+.+|.+++++++..|+++|.+|+.+.+ +..+.+... |+++.|+.+
T Consensus 221 ~~a~~~L~~L~~~~~~~----~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~~~~-g~v~~Lv~l 294 (528)
T 4b8j_A 221 RNATWTLSNFCRGKPQP----SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN-DKIQAVIEA-GVCPRLVEL 294 (528)
T ss_dssp HHHHHHHHHHHCSSSCC----CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH-HHHHHHHHT-TCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCC----cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHc-CHHHHHHHH
Confidence 99999999999874221 122358999999999999999999999999999997744 333455665 999999999
Q ss_pred hccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCC
Q 008257 270 ISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDE 349 (572)
Q Consensus 270 L~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~ 349 (572)
|.+++. .++..|+++|++++.+++..++.+++.|++|.|+.+|.+. ....+++.|+++|.+++.+ +
T Consensus 295 L~~~~~--~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~---------~~~~v~~~A~~~L~nl~~~---~ 360 (528)
T 4b8j_A 295 LLHPSP--SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN---------LKKSIKKEACWTISNITAG---N 360 (528)
T ss_dssp TTCSCH--HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC---------CCHHHHHHHHHHHHHHHTS---C
T ss_pred HcCCCh--hHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC---------CcHHHHHHHHHHHHHHHCC---C
Confidence 999885 8999999999999998888888999999999999999862 1456788999999999964 7
Q ss_pred hHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccC
Q 008257 350 PDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRG 429 (572)
Q Consensus 350 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 429 (572)
++....+.+.|++|.|+++|.++ ++.+|..|+++|.+++.....
T Consensus 361 ~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~----------------------------------- 404 (528)
T 4b8j_A 361 KDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSH----------------------------------- 404 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCH-----------------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCH-----------------------------------
Confidence 88888899999999999999998 999999999999999875210
Q ss_pred ccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccc--------hhhHHHHHhcCChHHHHHHHhhcC
Q 008257 430 LCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDI--------EQGVMVLCEAQGIKPILDVLLEKR 501 (572)
Q Consensus 430 ~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~--------~~~~~~i~~~g~i~~L~~lL~~~~ 501 (572)
....++++.|++++|+++|.+.+++++..|+.+|.+|+..++.. ......+.++||+..+..+. .|+
T Consensus 405 ----~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~-~~~ 479 (528)
T 4b8j_A 405 ----DQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQ-SHD 479 (528)
T ss_dssp ----HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGG-GCS
T ss_pred ----HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHH-cCC
Confidence 12234678999999999999999999999999999999754321 12577899999999999887 699
Q ss_pred CHHHHHHHHHHHHHHHcch
Q 008257 502 TENLQRRAVWVVERILRTD 520 (572)
Q Consensus 502 ~~~~~~~a~~~l~~l~~~~ 520 (572)
++++++.|.+++.+++..+
T Consensus 480 ~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 480 NNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp SHHHHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHHHCCCc
Confidence 9999999999999999663
No 15
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=9.1e-39 Score=360.43 Aligned_cols=472 Identities=14% Similarity=0.156 Sum_probs=371.5
Q ss_pred CCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC-cchhHHHHhhhH-HHHHH
Q 008257 6 SENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN-SDVKVLVARTVG-SCLIN 83 (572)
Q Consensus 6 s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~-~~~k~~i~~~g~-~~Lv~ 83 (572)
++|+.+++.|+.+|.+|+..++++..+.+.|++++|+.+|+++++.+|..|+++|.+++.+ ++.+..+.+.|+ +.|++
T Consensus 204 ~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~ 283 (780)
T 2z6g_A 204 TNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 283 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHH
Confidence 4589999999999999999999999999999999999999999999999999999999984 677778877777 99999
Q ss_pred hcccCCHHHHHHHHHHHHHhhc-CCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccC
Q 008257 84 IMKSGNMQAREAALKALNQISS-CEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVG 162 (572)
Q Consensus 84 lL~s~~~~~~~~A~~aL~~Ls~-~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~ 162 (572)
+|++++..++..|+.+|.+|+. +++++..+++.|+++.|+++|++.. +...++.++.+|.+|+.+...
T Consensus 284 lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~----~~~~~~~a~~aL~~Ls~~~~~------- 352 (780)
T 2z6g_A 284 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT----YEKLLWTTSRVLKVLSVCSSN------- 352 (780)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC----CHHHHHHHHHHHHHHHTSTTH-------
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC----HHHHHHHHHHHHHHhhcChHH-------
Confidence 9999999999999999999996 4677888899999999999998642 356788899999999975321
Q ss_pred CCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHH
Q 008257 163 PDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQ 242 (572)
Q Consensus 163 ~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~ 242 (572)
...+...|+++.|+.++.+++++++..++++|.+++...... ....++++.|+.+|.+++++++..|+++|.
T Consensus 353 --~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~------~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~ 424 (780)
T 2z6g_A 353 --KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ------EGMEGLLGTLVQLLGSDDINVVTCAAGILS 424 (780)
T ss_dssp --HHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC------SCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred --HHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh------hhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 235677899999999999999999999999999999765321 012468999999999999999999999999
Q ss_pred HcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHH---HHHHHHhCCChHHHHHHHhhhcc
Q 008257 243 NLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLG---LTRQMLDEGAFGLIFSRVKSIQL 319 (572)
Q Consensus 243 ~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~---~~~~l~~~g~l~~Lv~lL~~~~~ 319 (572)
+|+.+. .+..+.+... |+++.|+++|...++...++..|+++|++|+..+.+ .+..+.+.|++|.|+.+|.+..
T Consensus 425 ~L~~~~-~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~- 501 (780)
T 2z6g_A 425 NLTCNN-YKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPS- 501 (780)
T ss_dssp HHTSSC-HHHHHHHHTT-THHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC-
T ss_pred HHHhCC-HHHHHHHHHC-CCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCC-
Confidence 999874 3444566666 999999999987443237999999999999875443 3457889999999999998621
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHH--hhhhccccCC
Q 008257 320 GETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALEN--LSLESKNLTK 397 (572)
Q Consensus 320 ~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~--ls~~~~~~~~ 397 (572)
...+++.++++|.+++. ++..+..+.+.|++|.|+++|.++ +..+|+.|+|++.| +.......
T Consensus 502 --------~~~v~~~A~~aL~nLa~----~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~aa~al~nq~~~~~~~~~-- 566 (780)
T 2z6g_A 502 --------HWPLIKATVGLIRNLAL----CPANHAPLREQGAIPRLVQLLVRA-HQDTQRRTSMGGTQQQFVEGVRME-- 566 (780)
T ss_dssp --------CHHHHHHHHHHHHHHHS----SHHHHHHHHHTTHHHHHHHHHHHH-HHHHHHTTC------CCSTTCCHH--
T ss_pred --------hHHHHHHHHHHHHHHhc----CHHHHHHHHHCCCHHHHHHHHHhc-chhHHHHHhhccccchhhcccChH--
Confidence 24678899999999994 677778899999999999999987 77788888887765 21100000
Q ss_pred CCCCCCCCCCccccccccCCCccccccccccCcc-CccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCcc
Q 008257 398 LPELPPSGFCASIFPCFSKQPVITGLCRLHRGLC-SLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVD 476 (572)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~ 476 (572)
.+ ....|.+...++ +..+...+++.|+|++|+++|.+.++.++..|+.+|++|+.+.
T Consensus 567 -----------~v---------~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~-- 624 (780)
T 2z6g_A 567 -----------EI---------VEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK-- 624 (780)
T ss_dssp -----------HH---------HHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSH--
T ss_pred -----------HH---------HHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH--
Confidence 00 000000000001 2244556789999999999999999999999999999998653
Q ss_pred chhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchh--hhhhhcCCCCchHHHHHHhhcCC
Q 008257 477 IEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDD--IAYEVSGDPNVSTALVDAFQHAD 544 (572)
Q Consensus 477 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~~~~~Lv~ll~~~~ 544 (572)
.....|.++||++.|++++ .++++.+++.|+++|.++..+.. ++..+ ++ ..+..++++.+
T Consensus 625 --~~~~~i~~~g~i~~L~~Ll-~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l----~~-~ll~~l~~~~~ 686 (780)
T 2z6g_A 625 --EAAEAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRMSEDKPQDYKKRL----SV-ELTSSLFRTEP 686 (780)
T ss_dssp --HHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTSCTTHHHHH----HH-HHHHHC-----
T ss_pred --HHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCChHhhhccc----cH-HHHHHHHhCCC
Confidence 4578899999999999999 59999999999999999996632 33222 23 35666666655
No 16
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3e-39 Score=338.31 Aligned_cols=363 Identities=15% Similarity=0.177 Sum_probs=289.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHcc------------CCHHHHHHHHHHHHHhcc-Cc
Q 008257 1 MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILE------------GPQETKLSLAAFLGDLAL-NS 67 (572)
Q Consensus 1 ~~~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~------------~~~~~~~~aa~~L~~l~~-~~ 67 (572)
++|+.|.|+.. ..+.|..++.+++.+..++++|++|.|+++|+. +++++|.+|+++|.|++. .+
T Consensus 38 ~~~~~~~~~~~---~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~ 114 (458)
T 3nmz_A 38 LSMLGTHDKDD---MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQP 114 (458)
T ss_dssp -------CCHH---HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhcCCCHHH---HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCc
Confidence 36788888883 667888889888888999999999999999996 347999999999999998 55
Q ss_pred chhHHHHhhhH-----------HHHHHhcccCC--HH-----H-------HHHHHHHHHHhhcCCCcHHHHHHcCChHHH
Q 008257 68 DVKVLVARTVG-----------SCLINIMKSGN--MQ-----A-------REAALKALNQISSCEPSAKVLIHAGILPPL 122 (572)
Q Consensus 68 ~~k~~i~~~g~-----------~~Lv~lL~s~~--~~-----~-------~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~L 122 (572)
+.+....+.|+ +.+++++.+.+ .+ + +..|+++|.|++.++++|+.|++.|++++|
T Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~L 194 (458)
T 3nmz_A 115 DDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAI 194 (458)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHH
Confidence 55554444333 45667777542 11 3 349999999999999999999999999999
Q ss_pred HHHHhccC------CCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccc-hhhhHHHHHHHHhcCChhHHHHHHHH
Q 008257 123 VKDLFTVG------SNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLV-SEDIVHNLLHLISNTGPTIECKLLQV 195 (572)
Q Consensus 123 v~lL~s~~------~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~-~~~~i~~Lv~lL~~~~~~~q~~a~~a 195 (572)
+++|.+.. .+..++.++++|+|+|.||+.++.... ..+. ..|+||.|+++|+++++++|..++++
T Consensus 195 v~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k--------~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~a 266 (458)
T 3nmz_A 195 AELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK--------ATLCSMKGCMRALVAQLKSESEDLQQVIASV 266 (458)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHH--------HHHHHCHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccH--------HHHHHcCCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 99995310 001126789999999999997643211 1232 46789999999999999999999999
Q ss_pred HHHccCCCCccHHHHHHHHhcCChHHHHHHh-cCCCHHHHHHHHHHHHHcCCCCChhHHHHHh-cccCChhhHHhhhccC
Q 008257 196 LVGLTSSPTTVLSVVSAIKSSGATISLVQFV-EAPQNDLRLASIELIQNLSPHMGHELADALR-GAVGQLGSLIRVISEN 273 (572)
Q Consensus 196 L~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~-~~~g~l~~Lv~lL~~~ 273 (572)
|.+|+...+ +..+..|.+.||||+|+++| +++++.+++.|+.+|++|+.+.. +....+. .. |+++.|+++|.++
T Consensus 267 L~nLs~~~~--~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~-~nk~~I~~~~-Gal~~Lv~LL~~~ 342 (458)
T 3nmz_A 267 LRNLSWRAD--VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT-ENKADICAVD-GALAFLVGTLTYR 342 (458)
T ss_dssp HHHHTSSCC--HHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCH-HHHHHHHHST-THHHHHHHHTTCC
T ss_pred HHHHhcCCC--HHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCH-HHHHHHHHhc-CcHHHHHHHhcCC
Confidence 999998532 35788999999999999975 56788999999999999997422 2234565 45 9999999999987
Q ss_pred CCC--hHHHHHHHHHHhcCCC---CcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCC
Q 008257 274 VGI--SKEQAAAVGLLAELPE---RDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSD 348 (572)
Q Consensus 274 ~~~--~~~~~~A~~~L~~L~~---~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~ 348 (572)
++. .+++..|+++|+||+. .+++.++.++++|++|+|+.+|++. ...+++.|+++|++++..
T Consensus 343 ~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~----------~~~v~~~A~~aL~nLa~~--- 409 (458)
T 3nmz_A 343 SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH----------SLTIVSNACGTLWNLSAR--- 409 (458)
T ss_dssp CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS----------CHHHHHHHHHHHHHHHSS---
T ss_pred CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC----------ChHHHHHHHHHHHHHHcC---
Confidence 641 1588999999999985 5778889999999999999999862 355789999999999964
Q ss_pred ChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhc
Q 008257 349 EPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLES 392 (572)
Q Consensus 349 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~ 392 (572)
++++++.+.+.|++|+|+++|+++ ++.+|+.|+++|.||+.+.
T Consensus 410 ~~~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 410 NPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp CHHHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCC
Confidence 899999999999999999999998 9999999999999998754
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.5e-37 Score=336.93 Aligned_cols=415 Identities=16% Similarity=0.182 Sum_probs=347.8
Q ss_pred HcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC--cchhHHHHhhhH-HHHHHhcccC-CHHHHHHHHHHHHHhhcCC-C
Q 008257 34 ENGRLQPLLTQILEGPQETKLSLAAFLGDLALN--SDVKVLVARTVG-SCLINIMKSG-NMQAREAALKALNQISSCE-P 108 (572)
Q Consensus 34 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~--~~~k~~i~~~g~-~~Lv~lL~s~-~~~~~~~A~~aL~~Ls~~~-~ 108 (572)
..+.++.|+..|+++++++|..|+.+|.++... +..+..+.+.|+ |.|+++|+++ ++.+|..|+++|.+++... +
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 457799999999999999999999999998653 455666777777 9999999997 8999999999999999864 5
Q ss_pred cHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhH
Q 008257 109 SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTI 188 (572)
Q Consensus 109 ~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~ 188 (572)
++..+++.|++|+|+++|.++ ++.+++.|+|+|+||+....... ..+...|+++.|+.++.+.++++
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~-----~~~vr~~A~~aL~~l~~~~~~~~--------~~~~~~~~l~~L~~ll~~~~~~v 231 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTG-----SVEVKEQAIWALGNVAGDSTDYR--------DYVLQCNAMEPILGLFNSNKPSL 231 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC-----CHHHHHHHHHHHHHHHTTCHHHH--------HHHHHTTCHHHHHHGGGSCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHhCCCccch--------HHHHHcCcHHHHHHHhccCCHHH
Confidence 677888999999999999874 38999999999999997532211 24556789999999999999999
Q ss_pred HHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHh
Q 008257 189 ECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIR 268 (572)
Q Consensus 189 q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~ 268 (572)
+..++++|.+++...... .......++++.|+.+|.++++.++..|+++|.+|+.+.+ +..+.+... |+++.|+.
T Consensus 232 ~~~a~~~L~~L~~~~~~~---~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-~~~~~~~~~-~~v~~Lv~ 306 (530)
T 1wa5_B 232 IRTATWTLSNLCRGKKPQ---PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ-EAIQAVIDV-RIPKRLVE 306 (530)
T ss_dssp HHHHHHHHHHHHCCSSSC---CCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH-HHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCC---CcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCH-HHHHHHHhc-CcHHHHHH
Confidence 999999999999764211 1233458999999999999999999999999999997743 333455555 89999999
Q ss_pred hhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCC
Q 008257 269 VISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSD 348 (572)
Q Consensus 269 lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~ 348 (572)
+|.+++. .++..|+++|++++.+++...+.+++.|++|.|+.+|.+. ...+++.++++|.+++.+
T Consensus 307 lL~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----------~~~vr~~A~~aL~~l~~~--- 371 (530)
T 1wa5_B 307 LLSHEST--LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP----------KENIKKEACWTISNITAG--- 371 (530)
T ss_dssp GGGCSCH--HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS----------CHHHHHHHHHHHHHHTTS---
T ss_pred HHCCCCh--hhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC----------CHHHHHHHHHHHHHHHcC---
Confidence 9998774 8999999999999988888888899999999999999862 456788999999999964
Q ss_pred ChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCcccccccccc
Q 008257 349 EPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHR 428 (572)
Q Consensus 349 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 428 (572)
+++..+.+.+.|++|.|+++|.++ ++.+|..|+++|++++......
T Consensus 372 ~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~--------------------------------- 417 (530)
T 1wa5_B 372 NTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQR--------------------------------- 417 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTC---------------------------------
T ss_pred CHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCc---------------------------------
Confidence 778888888999999999999998 8999999999999998643110
Q ss_pred CccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccc--------hhhHHHHHhcCChHHHHHHHhhc
Q 008257 429 GLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDI--------EQGVMVLCEAQGIKPILDVLLEK 500 (572)
Q Consensus 429 ~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~--------~~~~~~i~~~g~i~~L~~lL~~~ 500 (572)
.+...++++.|++++|+.+|.+.++.++..|+.+|.+++...+.. ......+.++||++.|..++ .+
T Consensus 418 ----~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~-~~ 492 (530)
T 1wa5_B 418 ----PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ-QN 492 (530)
T ss_dssp ----THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGG-GC
T ss_pred ----HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHH-cC
Confidence 012234678999999999999999999999999999999754321 23467799999999999988 69
Q ss_pred CCHHHHHHHHHHHHHHHcch
Q 008257 501 RTENLQRRAVWVVERILRTD 520 (572)
Q Consensus 501 ~~~~~~~~a~~~l~~l~~~~ 520 (572)
+++.+++.|.++|.+++..+
T Consensus 493 ~~~~v~~~a~~il~~~~~~~ 512 (530)
T 1wa5_B 493 ENDKIYEKAYKIIETYFGEE 512 (530)
T ss_dssp SCHHHHHHHHHHHHHHSSSC
T ss_pred CCHHHHHHHHHHHHHHCCcc
Confidence 99999999999999999763
No 18
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=8.7e-39 Score=341.86 Aligned_cols=387 Identities=14% Similarity=0.135 Sum_probs=301.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcc-CcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc--CcchhHHHHhhhH
Q 008257 2 TSSKSENLLTVEKAEKTLANLEK-CENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL--NSDVKVLVARTVG 78 (572)
Q Consensus 2 ~~~~s~~~~~~~~A~~~L~~L~~-~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~--~~~~k~~i~~~g~ 78 (572)
.+|+|+|+.++..|+.+|.+|+. +++++..+++.|+|++||.+|++++.++|..|+++|.+|+. ++++|..|.+.|+
T Consensus 55 ~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~Ga 134 (584)
T 3l6x_A 55 AMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDG 134 (584)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCC
Confidence 36789999999999999999996 88999999999999999999999999999999999999998 3789999999988
Q ss_pred -HHHHHhccc-CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCC
Q 008257 79 -SCLINIMKS-GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDF 156 (572)
Q Consensus 79 -~~Lv~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~ 156 (572)
|+||++|++ .+.++|+.|+++|++|+.+++++..|++ |+||+|+++|..+. ...... ....
T Consensus 135 Ip~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~-----sg~~~~------~~~~----- 197 (584)
T 3l6x_A 135 VPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPH-----SGWERE------PNED----- 197 (584)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHH-----HCCC-----------------
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccc-----cccccc------cccc-----
Confidence 999999997 6789999999999999999999999995 67999999884321 000000 0000
Q ss_pred CccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCC-hHHHHHHhcC------C
Q 008257 157 DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGA-TISLVQFVEA------P 229 (572)
Q Consensus 157 ~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~-i~~Lv~lL~~------~ 229 (572)
-++..+.+++++.+++++|.+|+... ++.|..|++++| ++.||.++++ .
T Consensus 198 ---------------------~k~~~~~d~~V~~nAa~~L~NLs~~~---~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~ 253 (584)
T 3l6x_A 198 ---------------------CKPRHIEWESVLTNTAGCLRNVSSER---SEARRKLRECDGLVDALIFIVQAEIGQKDS 253 (584)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTSSC---HHHHHHHHHSTTHHHHHHHHHHHHHHTTCC
T ss_pred ---------------------ccccccccHHHHHHHHHHHHHHhcCC---HHHHHHHHHcCCcHHHHHHHHHHhhcccCc
Confidence 00112346788888888888888765 346888888765 5699999975 4
Q ss_pred CHHHHHHHHHHHHHcCCCCChhH------H------------------HHHhcccCChhhHHhhhccCCCChHHHHHHHH
Q 008257 230 QNDLRLASIELIQNLSPHMGHEL------A------------------DALRGAVGQLGSLIRVISENVGISKEQAAAVG 285 (572)
Q Consensus 230 ~~~v~~~a~~~L~~Ls~~~~~~~------~------------------~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~ 285 (572)
+...+++|+++|+||+.+...++ . +.+... ++++.|+.+|..... ..+++.|++
T Consensus 254 ~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~-~~v~~Ll~LL~~s~~-~~v~E~Aa~ 331 (584)
T 3l6x_A 254 DSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQP-EVVRIYISLLKESKT-PAILEASAG 331 (584)
T ss_dssp SCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSH-HHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcc-cHHHHHHHHHccCCC-HHHHHHHHH
Confidence 56799999999999986521111 0 111222 456678899976543 489999999
Q ss_pred HHhcCCCCc----HHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCc
Q 008257 286 LLAELPERD----LGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNL 361 (572)
Q Consensus 286 ~L~~L~~~~----~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~ 361 (572)
+|+||+.++ ..++..+.++|++|.|+.+|.+ ....+++.++++|.+++. ++.++..| +.|+
T Consensus 332 AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s----------~~~~v~~~A~~aL~nLs~----~~~~~~~I-~~g~ 396 (584)
T 3l6x_A 332 AIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN----------EHERVVKAASGALRNLAV----DARNKELI-GKHA 396 (584)
T ss_dssp HHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC----------SCHHHHHHHHHHHHHHHT----TCSCHHHH-HHHH
T ss_pred HHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC----------CCHHHHHHHHHHHHHHhC----ChhHHHHH-HhCC
Confidence 999998754 2344566678999999999986 245789999999999994 66677666 7899
Q ss_pred hHHHHHHhccCC-------cHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCcc
Q 008257 362 AALFIELLQSNG-------LDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLK 434 (572)
Q Consensus 362 i~~Lv~lL~~~~-------~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 434 (572)
+|.||++|.++. +++++..|+++|.|+...+. +
T Consensus 397 ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~----------------------------------------~ 436 (584)
T 3l6x_A 397 IPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL----------------------------------------E 436 (584)
T ss_dssp HHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCH----------------------------------------H
T ss_pred HHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCH----------------------------------------H
Confidence 999999999862 36788899999999975332 2
Q ss_pred chhhhhhccchHHHHHhhcCC--CHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChH
Q 008257 435 ETFCLLEGHAVEKLIALLDHT--NEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIK 491 (572)
Q Consensus 435 ~~~~l~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~ 491 (572)
++..++++|+|++|++||++. +++++++|..+|++++.+. +.+..+.+ .|+.
T Consensus 437 ~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~----elr~~~kk-~G~~ 490 (584)
T 3l6x_A 437 AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK----ELRKPLEK-EGWK 490 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH----HHHHHHHT-TTCC
T ss_pred HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH----HHHHHHHH-cCCC
Confidence 344578999999999999986 8999999999999999864 34455555 4443
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=3.1e-36 Score=326.49 Aligned_cols=410 Identities=14% Similarity=0.159 Sum_probs=344.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhccC--cchHHHHHHcCCcHHHHHHHccCC-HHHHHHHHHHHHHhcc-CcchhHHHHhhhH
Q 008257 3 SSKSENLLTVEKAEKTLANLEKC--ENNVRQMAENGRLQPLLTQILEGP-QETKLSLAAFLGDLAL-NSDVKVLVARTVG 78 (572)
Q Consensus 3 ~~~s~~~~~~~~A~~~L~~L~~~--~~n~~~i~~~g~i~~Lv~~L~~~~-~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~ 78 (572)
+++|+|+..+..|+..|.++... +.++..+++.|++++|+.+|++++ +.+|..|+++|.+++. +++++..+.+.|+
T Consensus 82 ~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~ 161 (528)
T 4b8j_A 82 GVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 161 (528)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCc
Confidence 46789999999999999999653 367899999999999999999887 9999999999999998 4678888888888
Q ss_pred -HHHHHhcccCCHHHHHHHHHHHHHhhcCC-CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCC
Q 008257 79 -SCLINIMKSGNMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDF 156 (572)
Q Consensus 79 -~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~-~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~ 156 (572)
|+|+.+|+++++.+++.|+++|.+|+.+. .++..+++.|++|+|+.+|... .+..++..|+|+|.||+.+....
T Consensus 162 i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~----~~~~v~~~a~~~L~~L~~~~~~~ 237 (528)
T 4b8j_A 162 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH----TKLSMLRNATWTLSNFCRGKPQP 237 (528)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT----CCHHHHHHHHHHHHHHHCSSSCC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC----CCHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999864 4578888999999999999532 24789999999999999864221
Q ss_pred CccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHH
Q 008257 157 DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLA 236 (572)
Q Consensus 157 ~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 236 (572)
......++++.|+++|.+++++++..++++|.+++..+. .....+.+.|+++.|+.+|.++++.++..
T Consensus 238 ---------~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~---~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~ 305 (528)
T 4b8j_A 238 ---------SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN---DKIQAVIEAGVCPRLVELLLHPSPSVLIP 305 (528)
T ss_dssp ---------CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH---HHHHHHHHTTCHHHHHHHTTCSCHHHHHH
T ss_pred ---------cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH---HHHHHHHHcCHHHHHHHHHcCCChhHHHH
Confidence 123457899999999999999999999999999998753 34567788999999999999999999999
Q ss_pred HHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccC-CCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHh
Q 008257 237 SIELIQNLSPHMGHELADALRGAVGQLGSLIRVISEN-VGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVK 315 (572)
Q Consensus 237 a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~-~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~ 315 (572)
|+++|.+++.+.+ ...+.+... |+++.|+.+|.++ +. .++..|+++|+|++.++++..+.+++.|++|.|+.+|.
T Consensus 306 a~~~L~nl~~~~~-~~~~~~~~~-~~l~~L~~lL~~~~~~--~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~ 381 (528)
T 4b8j_A 306 ALRTVGNIVTGDD-AQTQCIIDH-QALPCLLSLLTQNLKK--SIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ 381 (528)
T ss_dssp HHHHHHHHTTSCH-HHHHHHHTT-THHHHHHHHHHSCCCH--HHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCH-HHHHHHHHh-hhHHHHHHHHcCCCcH--HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh
Confidence 9999999998743 333456665 9999999999988 54 89999999999999878888889999999999999998
Q ss_pred hhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhcccc
Q 008257 316 SIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNL 395 (572)
Q Consensus 316 ~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~ 395 (572)
+. +..+++.++++|.+++.. .+++....+.+.|++++|+++|.++ ++.++..++++|.++.......
T Consensus 382 ~~----------~~~v~~~a~~aL~nl~~~--~~~~~~~~l~~~~~i~~L~~lL~~~-d~~v~~~al~~L~~l~~~~~~~ 448 (528)
T 4b8j_A 382 TA----------EFDIKKEAAWAISNATSG--GSHDQIKYLVSEGCIKPLCDLLICP-DIRIVTVCLEGLENILKVGETD 448 (528)
T ss_dssp HS----------CHHHHHHHHHHHHHHHHH--SCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cC----------CHHHHHHHHHHHHHHHcC--CCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHh
Confidence 62 456789999999999865 4788999999999999999999998 9999999999999997654331
Q ss_pred CCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcC
Q 008257 396 TKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDG 474 (572)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~ 474 (572)
......+. ..-...+.+.|+++.|..++++.++++++.|..+|.+++..+
T Consensus 449 ~~~~~~~~-----------------------------~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 449 KTLAAGDV-----------------------------NVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HHHHTCSC-----------------------------CHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred hhcccccc-----------------------------cHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 10000000 001113568999999999999999999999999999998643
No 20
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=325.72 Aligned_cols=366 Identities=14% Similarity=0.164 Sum_probs=284.9
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCC-------CCCcchHHHHHHHHHHHHh
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSN-------HLPMRLKEVSATILANVVN 151 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~-------~~~~~~~~~aa~~L~nla~ 151 (572)
+.|+.++.+.+++ ...+.|..++.+++.+..+++.|++|.||++|...+.+ ..+++++.+|+|+|.||+.
T Consensus 35 ~~l~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~ 111 (458)
T 3nmz_A 35 YSLLSMLGTHDKD---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIH 111 (458)
T ss_dssp ----------CCH---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHH---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHc
Confidence 7788888877766 37888999999999889999999999999999863210 0236999999999999998
Q ss_pred cCCCCCccccCCCccccchhhhH----------HHHHHHHhcCC--hh-----H-------HHHHHHHHHHccCCCCccH
Q 008257 152 SGHDFDSITVGPDNQTLVSEDIV----------HNLLHLISNTG--PT-----I-------ECKLLQVLVGLTSSPTTVL 207 (572)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~~~~i----------~~Lv~lL~~~~--~~-----~-------q~~a~~aL~~l~~~~~~~~ 207 (572)
..++... .....+++ +.+++++.+.+ .+ + +.+|+|+|.+++.++
T Consensus 112 ~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~---- 179 (458)
T 3nmz_A 112 SQPDDKR--------GRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE---- 179 (458)
T ss_dssp HSCSCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSH----
T ss_pred cCcchhH--------HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCH----
Confidence 7654322 12233444 55677776542 22 3 339999999997763
Q ss_pred HHHHHHHhcCChHHHHHHhcC-----------CCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCC
Q 008257 208 SVVSAIKSSGATISLVQFVEA-----------PQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGI 276 (572)
Q Consensus 208 ~~~~~i~~~g~i~~Lv~lL~~-----------~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~ 276 (572)
++|..|.+.|++++|+.+|.. .++.++++|+|+|.+|+.+.+ .....+....|+||.|+++|.+++.
T Consensus 180 e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~-~~k~~i~~~~GaIp~LV~LL~s~~~- 257 (458)
T 3nmz_A 180 EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV-ANKATLCSMKGCMRALVAQLKSESE- 257 (458)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHCHHHHHHHHHGGGCSCH-
T ss_pred HHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCc-ccHHHHHHcCCcHHHHHHHHhCCCH-
Confidence 679999999999999999952 236789999999999997743 3333454332669999999998875
Q ss_pred hHHHHHHHHHHhcCCCC-cHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHH
Q 008257 277 SKEQAAAVGLLAELPER-DLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIAL 355 (572)
Q Consensus 277 ~~~~~~A~~~L~~L~~~-~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~ 355 (572)
+++..|+++|+||+.. ++++++.+++.|++|+|+.+|... ....+++.++++|++++.. +.+++..
T Consensus 258 -~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s---------~~~~v~~~A~~aL~nLs~~---~~~nk~~ 324 (458)
T 3nmz_A 258 -DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV---------KKESTLKSVLSALWNLSAH---CTENKAD 324 (458)
T ss_dssp -HHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTC---------CSHHHHHHHHHHHHHHHHH---CHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcC---------CCHHHHHHHHHHHHHHccC---CHHHHHH
Confidence 8999999999999985 677889999999999999987541 1456789999999999953 5667777
Q ss_pred HH-HcCchHHHHHHhccCCcH----HHHHHHHHHHHHhhhh---ccccCCCCCCCCCCCCccccccccCCCccccccccc
Q 008257 356 CC-EHNLAALFIELLQSNGLD----KVQMVSATALENLSLE---SKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLH 427 (572)
Q Consensus 356 i~-~~g~i~~Lv~lL~~~~~~----~vk~~Aa~aL~~ls~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 427 (572)
+. ..|++|+|+++|.++ ++ .+++.|+++|.|++.. ..
T Consensus 325 I~~~~Gal~~Lv~LL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~---------------------------------- 369 (458)
T 3nmz_A 325 ICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNE---------------------------------- 369 (458)
T ss_dssp HHHSTTHHHHHHHHTTCC-CSSSTTHHHHHHHHHHHHHHHHHTTCH----------------------------------
T ss_pred HHHhcCcHHHHHHHhcCC-CCcchHHHHHHHHHHHHHHHhcccCCH----------------------------------
Confidence 76 799999999999987 43 5999999999999851 11
Q ss_pred cCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHH
Q 008257 428 RGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQR 507 (572)
Q Consensus 428 ~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~ 507 (572)
.+...++++|+|++||++|++++.++++.|+++|++|+.... +....|.++|+|++|+++| .++++.+++
T Consensus 370 ------~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~---~~~~~i~~~G~I~~Lv~LL-~s~~~~v~~ 439 (458)
T 3nmz_A 370 ------DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP---KDQEALWDMGAVSMLKNLI-HSKHKMIAM 439 (458)
T ss_dssp ------HHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCH---HHHHHHHHHTHHHHHHTTT-TCSSHHHHH
T ss_pred ------HHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCH---HHHHHHHHCCCHHHHHHHH-hCCCHHHHH
Confidence 122347799999999999999999999999999999995432 4578899999999999999 589999999
Q ss_pred HHHHHHHHHHcc
Q 008257 508 RAVWVVERILRT 519 (572)
Q Consensus 508 ~a~~~l~~l~~~ 519 (572)
.|+++|.+++.+
T Consensus 440 ~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 440 GSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHcC
Confidence 999999999965
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.3e-35 Score=321.67 Aligned_cols=411 Identities=13% Similarity=0.143 Sum_probs=344.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhccC--cchHHHHHHcCCcHHHHHHHccC-CHHHHHHHHHHHHHhcc-CcchhHHHHhhhH
Q 008257 3 SSKSENLLTVEKAEKTLANLEKC--ENNVRQMAENGRLQPLLTQILEG-PQETKLSLAAFLGDLAL-NSDVKVLVARTVG 78 (572)
Q Consensus 3 ~~~s~~~~~~~~A~~~L~~L~~~--~~n~~~i~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~ 78 (572)
+++|+|+..+..|+..|.++... +.++..+++.|+++.|+.+|.++ ++.+|..|+++|.+++. +++.+..+.+.|+
T Consensus 95 ~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~ 174 (530)
T 1wa5_B 95 QLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 174 (530)
T ss_dssp HHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCC
Confidence 46789999999999999999653 56778899999999999999997 89999999999999998 4567777777777
Q ss_pred -HHHHHhcccCCHHHHHHHHHHHHHhhcCC-CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCC
Q 008257 79 -SCLINIMKSGNMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDF 156 (572)
Q Consensus 79 -~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~-~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~ 156 (572)
|.|+++|+++++++++.|+++|.+|+.+. +++..+++.|++|+|+++|.+. +..++..|+|+|.+|+.+....
T Consensus 175 i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-----~~~v~~~a~~~L~~L~~~~~~~ 249 (530)
T 1wa5_B 175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-----KPSLIRTATWTLSNLCRGKKPQ 249 (530)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC-----CHHHHHHHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC-----CHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999874 5678888999999999999863 3789999999999999764211
Q ss_pred CccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHH
Q 008257 157 DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLA 236 (572)
Q Consensus 157 ~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 236 (572)
. ......++++.|+.+|.+++++++..++++|.+++.... ..+..+.+.|+++.|+.+|.++++.++..
T Consensus 250 ~--------~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~---~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~ 318 (530)
T 1wa5_B 250 P--------DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ---EAIQAVIDVRIPKRLVELLSHESTLVQTP 318 (530)
T ss_dssp C--------CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH---HHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred C--------cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCH---HHHHHHHhcCcHHHHHHHHCCCChhhHHH
Confidence 1 234557899999999999999999999999999998753 45667788999999999999999999999
Q ss_pred HHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhh
Q 008257 237 SIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS 316 (572)
Q Consensus 237 a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~ 316 (572)
|+++|.+++.+.+ ...+.+... |+++.|+.+|.+++. .++..|+++|++++.++++..+.+++.|++|.|+.+|.+
T Consensus 319 a~~~L~~l~~~~~-~~~~~~~~~-~~l~~L~~lL~~~~~--~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 394 (530)
T 1wa5_B 319 ALRAVGNIVTGND-LQTQVVINA-GVLPALRLLLSSPKE--NIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 394 (530)
T ss_dssp HHHHHHHHTTSCH-HHHHHHHHT-THHHHHHHHTTCSCH--HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCH-HHHHHHHHc-chHHHHHHHHcCCCH--HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc
Confidence 9999999997743 333455555 899999999998874 899999999999998777877889999999999999976
Q ss_pred hccCCCCCCcchhhHHHHHHHHHHHHhccCCCCh--HHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccc
Q 008257 317 IQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEP--DAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKN 394 (572)
Q Consensus 317 ~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~ 394 (572)
.+..++..++++|.+++.. .++ +..+.+.+.|++|.|+.+|.++ ++.++..++++|.++....+.
T Consensus 395 ----------~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 395 ----------AEYKTKKEACWAISNASSG--GLQRPDIIRYLVSQGCIKPLCDLLEIA-DNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp ----------SCHHHHHHHHHHHHHHHHH--TTTCTHHHHHHHHTTCHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhh
Confidence 2456788999999999864 345 7788888999999999999998 999999999999999875542
Q ss_pred cCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcC
Q 008257 395 LTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDG 474 (572)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~ 474 (572)
......... ..-...+.+.|+++.|..|+.++++++++.|..+|.++..+.
T Consensus 462 ~~~~~~~~~-----------------------------~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~ 512 (530)
T 1wa5_B 462 DKEARGLNI-----------------------------NENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE 512 (530)
T ss_dssp HHHHHTCSS-----------------------------CHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred hhhcccccc-----------------------------cHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 110000000 000113568999999999999999999999999999998654
Q ss_pred c
Q 008257 475 V 475 (572)
Q Consensus 475 ~ 475 (572)
+
T Consensus 513 ~ 513 (530)
T 1wa5_B 513 E 513 (530)
T ss_dssp C
T ss_pred c
Confidence 3
No 22
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.4e-37 Score=328.39 Aligned_cols=369 Identities=16% Similarity=0.144 Sum_probs=291.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhccC-cchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC-cchhHHHHhhhH-H
Q 008257 3 SSKSENLLTVEKAEKTLANLEKC-ENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN-SDVKVLVARTVG-S 79 (572)
Q Consensus 3 ~~~s~~~~~~~~A~~~L~~L~~~-~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~-~~~k~~i~~~g~-~ 79 (572)
+++|+|+.++..|+.+|.+|+.. +.++..+++.|+|++|+++|+++++++|..|+++|.+++.. +++|..|.+.|+ |
T Consensus 10 ~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~ 89 (457)
T 1xm9_A 10 YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIR 89 (457)
T ss_dssp HHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Confidence 56789999999999999999974 45577999999999999999999999999999999999984 899999998888 9
Q ss_pred HHHHhcc-cCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCC---CCCCcchHHHHHHHHHHHHhcCCC
Q 008257 80 CLINIMK-SGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGS---NHLPMRLKEVSATILANVVNSGHD 155 (572)
Q Consensus 80 ~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~---~~~~~~~~~~aa~~L~nla~~~~~ 155 (572)
+||++|+ ++++++++.|+++|.||+.+++++..+++ |+||+|+++|..+.+ .+.....++
T Consensus 90 ~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e--------------- 153 (457)
T 1xm9_A 90 EAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSRE--------------- 153 (457)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC------------------------
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcc---------------
Confidence 9999999 88999999999999999999889999999 999999999953100 000011110
Q ss_pred CCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhc-CChHHHHHHhcC------
Q 008257 156 FDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSS-GATISLVQFVEA------ 228 (572)
Q Consensus 156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~-g~i~~Lv~lL~~------ 228 (572)
..+++++.+++++|++|+.++ +.+..|++. |+++.|+.+|++
T Consensus 154 ---------------------------~~~~~v~~~a~~aL~nLs~~~----~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 202 (457)
T 1xm9_A 154 ---------------------------VVDPEVFFNATGCLRNLSSAD----AGRQTMRNYSGLIDSLMAYVQNCVAASR 202 (457)
T ss_dssp ---------------------------CCCHHHHHHHHHHHHHHTTSH----HHHHHHTTSTTHHHHHHHHHHHHHHHTC
T ss_pred ---------------------------cccHHHHHHHHHHHHHHccCH----HHHHHHHHcCCCHHHHHHHHHhhccccC
Confidence 024566777777777777652 467888887 999999999985
Q ss_pred CCHHHHHHHHHHHHHcCCCCC------h-------------------------------------------hHHHHHhcc
Q 008257 229 PQNDLRLASIELIQNLSPHMG------H-------------------------------------------ELADALRGA 259 (572)
Q Consensus 229 ~~~~v~~~a~~~L~~Ls~~~~------~-------------------------------------------~~~~~i~~~ 259 (572)
.+.+++++++++|++|+.... . .-.+.+...
T Consensus 203 ~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (457)
T 1xm9_A 203 CDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHS 282 (457)
T ss_dssp TTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSH
T ss_pred CchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCc
Confidence 345678889999998873210 0 000123333
Q ss_pred cCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHH----H-HHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHH
Q 008257 260 VGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLG----L-TRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEG 334 (572)
Q Consensus 260 ~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~----~-~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~ 334 (572)
|+++.|+.+|.++.+ +.+++.|+|+|+||+.++.. + +..+.++|++|.|+.+|.+. +..++..
T Consensus 283 -~~l~~L~~lL~~~~~-~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~----------~~~v~~~ 350 (457)
T 1xm9_A 283 -DAIRTYLNLMGKSKK-DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG----------NSDVVRS 350 (457)
T ss_dssp -HHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS----------CHHHHHH
T ss_pred -chHHHHHHHHhhcCC-HHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC----------CHhHHHH
Confidence 678899999987764 58999999999999975432 2 23344789999999999862 4567889
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCC-----cHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcc
Q 008257 335 LLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNG-----LDKVQMVSATALENLSLESKNLTKLPELPPSGFCAS 409 (572)
Q Consensus 335 a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~ 409 (572)
|+++|.+++ .+++++..+. .|++|+|+++|.++. ++++...++++|.++...+.
T Consensus 351 A~~aL~nls----~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~---------------- 409 (457)
T 1xm9_A 351 GASLLSNMS----RHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP---------------- 409 (457)
T ss_dssp HHHHHHHHH----TSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCT----------------
T ss_pred HHHHHHHHh----cCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCH----------------
Confidence 999999999 4777776655 578999999999862 24688889999999875332
Q ss_pred ccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCC-CHhHHHHHHHHHHHhhhcCc
Q 008257 410 IFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHT-NEKVVEASLAALSTVIDDGV 475 (572)
Q Consensus 410 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~~l~~~~~ 475 (572)
+....+.+.|++++|++|+.++ +++++..|.++|.+++.+.+
T Consensus 410 ------------------------~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 410 ------------------------QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp ------------------------HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred ------------------------HHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 2233477999999999999999 99999999999999997654
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=2.7e-36 Score=319.79 Aligned_cols=410 Identities=18% Similarity=0.161 Sum_probs=338.2
Q ss_pred CcHHHHHHHccCCHHHHHHHHHHHHHhcc--CcchhHHHHhh-hH-HHHHHhcccC-CHHHHHHHHHHHHHhhcC-CCcH
Q 008257 37 RLQPLLTQILEGPQETKLSLAAFLGDLAL--NSDVKVLVART-VG-SCLINIMKSG-NMQAREAALKALNQISSC-EPSA 110 (572)
Q Consensus 37 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~--~~~~k~~i~~~-g~-~~Lv~lL~s~-~~~~~~~A~~aL~~Ls~~-~~~~ 110 (572)
.++.|+..|+++++++|..|+.+|.++.. .+.....+.+. |+ |.|+++|+++ ++.+|..|+++|.+++.. +++.
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 58999999999999999999999999753 23222334444 77 9999999998 899999999999999985 4567
Q ss_pred HHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhc-CChhHH
Q 008257 111 KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISN-TGPTIE 189 (572)
Q Consensus 111 ~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~~~q 189 (572)
..+++.|++|.|+++|+++ ++.+++.|+++|++++....... ..+...|+++.|++++.+ .+++++
T Consensus 101 ~~~~~~~~i~~L~~lL~~~-----~~~vr~~a~~~L~~l~~~~~~~~--------~~~~~~~~i~~L~~~l~~~~~~~v~ 167 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSE-----FEDVQEQAVWALGNIAGDSTMCR--------DYVLDCNILPPLLQLFSKQNRLTMT 167 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHHTTCHHHH--------HHHHHTTCHHHHHHHTTSCCCHHHH
T ss_pred HHHHhCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHccCCHHHH--------HHHHHCCCHHHHHHHhcCCCCHHHH
Confidence 7788999999999999864 37999999999999997542111 235567899999999995 789999
Q ss_pred HHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhh
Q 008257 190 CKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRV 269 (572)
Q Consensus 190 ~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~l 269 (572)
..++++|.+++...... ....+ -.++++.|+.++.++++.++..++++|.+++.+.+ +..+.+... |+++.|+++
T Consensus 168 ~~a~~~L~~l~~~~~~~--~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~-~~i~~L~~l 242 (450)
T 2jdq_A 168 RNAVWALSNLCRGKSPP--PEFAK-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN-DKIQAVIDA-GVCRRLVEL 242 (450)
T ss_dssp HHHHHHHHHHHCCSSSC--CCGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH-HHHHHHHHT-TTHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCC--CCHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc-HHHHHHHHc-CcHHHHHHH
Confidence 99999999999764110 01111 27899999999999999999999999999998743 333455555 899999999
Q ss_pred hccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCC
Q 008257 270 ISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDE 349 (572)
Q Consensus 270 L~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~ 349 (572)
|.+++. .++..|+++|++++.+++...+.+.+.|+++.|+.+|.+. +..+++.++++|.+++.+ +
T Consensus 243 l~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~----------~~~vr~~a~~~L~~l~~~---~ 307 (450)
T 2jdq_A 243 LMHNDY--KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP----------KESIKKEACWTISNITAG---N 307 (450)
T ss_dssp TTCSCH--HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS----------SHHHHHHHHHHHHHHTTS---C
T ss_pred HCCCch--hHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC----------CHHHHHHHHHHHHHHHcC---C
Confidence 997775 8999999999999998888878899999999999999862 456788999999999964 7
Q ss_pred hHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccC
Q 008257 350 PDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRG 429 (572)
Q Consensus 350 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 429 (572)
++..+.+.+.|++|.|+++|.++ ++.+|..|+++|.+++.....
T Consensus 308 ~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~----------------------------------- 351 (450)
T 2jdq_A 308 RAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSA----------------------------------- 351 (450)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCH-----------------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCH-----------------------------------
Confidence 78888889999999999999998 899999999999999864210
Q ss_pred ccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccc--------hhhHHHHHhcCChHHHHHHHhhcC
Q 008257 430 LCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDI--------EQGVMVLCEAQGIKPILDVLLEKR 501 (572)
Q Consensus 430 ~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~--------~~~~~~i~~~g~i~~L~~lL~~~~ 501 (572)
.....+++.|++++|+++|++++++++..|+.+|.+++..++.. ......+.++||++.|..++ .++
T Consensus 352 ----~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~ 426 (450)
T 2jdq_A 352 ----EQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQ-SHE 426 (450)
T ss_dssp ----HHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHH-CHH
T ss_pred ----HHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHH-cCC
Confidence 11123568899999999999999999999999999999754321 23457899999999999988 689
Q ss_pred CHHHHHHHHHHHHHHHcch
Q 008257 502 TENLQRRAVWVVERILRTD 520 (572)
Q Consensus 502 ~~~~~~~a~~~l~~l~~~~ 520 (572)
++.+++.|..+|.+++..+
T Consensus 427 ~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 427 NQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHHHCCcc
Confidence 9999999999999999664
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=5.5e-35 Score=309.70 Aligned_cols=411 Identities=14% Similarity=0.132 Sum_probs=339.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhcc--CcchHHHHHHc-CCcHHHHHHHccC-CHHHHHHHHHHHHHhcc-CcchhHHHHhhh
Q 008257 3 SSKSENLLTVEKAEKTLANLEK--CENNVRQMAEN-GRLQPLLTQILEG-PQETKLSLAAFLGDLAL-NSDVKVLVARTV 77 (572)
Q Consensus 3 ~~~s~~~~~~~~A~~~L~~L~~--~~~n~~~i~~~-g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g 77 (572)
+++|+|+.+++.|...|+.+.. .+.....+++. |+++.|+++|+++ +.++|..|+++|.+++. +++++..+.+.|
T Consensus 28 ~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 107 (450)
T 2jdq_A 28 MIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAG 107 (450)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTT
T ss_pred HhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCC
Confidence 3578999999999999999743 34445667777 9999999999998 89999999999999988 456666777777
Q ss_pred H-HHHHHhcccCCHHHHHHHHHHHHHhhcCC-CcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257 78 G-SCLINIMKSGNMQAREAALKALNQISSCE-PSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD 155 (572)
Q Consensus 78 ~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~-~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~ 155 (572)
+ |.|+++|+++++++|+.|+++|.+|+.+. +++..+++.|++|+|+++|.+. .+..++..|+++|++++.+...
T Consensus 108 ~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~----~~~~v~~~a~~~L~~l~~~~~~ 183 (450)
T 2jdq_A 108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ----NRLTMTRNAVWALSNLCRGKSP 183 (450)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC----CCHHHHHHHHHHHHHHHCCSSS
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC----CCHHHHHHHHHHHHHHhCCCCC
Confidence 7 99999999999999999999999999875 4677888999999999999842 2478999999999999975411
Q ss_pred CCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHH
Q 008257 156 FDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRL 235 (572)
Q Consensus 156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 235 (572)
... ..+ ..++++.|++++.+++++++..++++|.+++.... ..+..+.+.|+++.|+.+|.+++++++.
T Consensus 184 ~~~-------~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 252 (450)
T 2jdq_A 184 PPE-------FAK-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN---DKIQAVIDAGVCRRLVELLMHNDYKVVS 252 (450)
T ss_dssp CCC-------GGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH---HHHHHHHHTTTHHHHHHHTTCSCHHHHH
T ss_pred CCC-------HHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc---HHHHHHHHcCcHHHHHHHHCCCchhHHH
Confidence 111 112 27899999999999999999999999999998653 4566778899999999999999999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHh
Q 008257 236 ASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVK 315 (572)
Q Consensus 236 ~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~ 315 (572)
.|+++|.+++.+.+ +..+.+... |+++.|+++|.+++. .++..|+++|++++.+++...+.+++.|++|.|+.+|.
T Consensus 253 ~a~~~L~~l~~~~~-~~~~~~~~~-~~l~~L~~ll~~~~~--~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~ 328 (450)
T 2jdq_A 253 PALRAVGNIVTGDD-IQTQVILNC-SALQSLLHLLSSPKE--SIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ 328 (450)
T ss_dssp HHHHHHHHHTTSCH-HHHHHHHTT-THHHHHHHHTTCSSH--HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCh-HHHHHHHHC-ccHHHHHHHHcCCCH--HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh
Confidence 99999999998743 333455665 899999999998774 89999999999999877788788999999999999998
Q ss_pred hhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhcccc
Q 008257 316 SIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNL 395 (572)
Q Consensus 316 ~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~ 395 (572)
+. +..++..++++|.+++.. .+++..+.+.+.|++|.|+++|+++ ++.++..|+++|.+++...+..
T Consensus 329 ~~----------~~~v~~~a~~~L~~l~~~--~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~ 395 (450)
T 2jdq_A 329 TA----------EFRTRKEAAWAITNATSG--GSAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILRLGEQE 395 (450)
T ss_dssp HS----------CHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cC----------CHHHHHHHHHHHHHHHcC--CCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhchhh
Confidence 62 456789999999999864 3678888888999999999999998 8999999999999998755422
Q ss_pred CCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcC
Q 008257 396 TKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDG 474 (572)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~ 474 (572)
.+...... . .-...+.+.|+++.|..++++++..+++.|..+|.++..+.
T Consensus 396 ~~~~~~~~----~-------------------------~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 396 AKRNGTGI----N-------------------------PYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHSCSCC----C-------------------------HHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhccccch----h-------------------------HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 10000000 0 00112568899999999999999999999999999998654
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=9.2e-33 Score=281.06 Aligned_cols=282 Identities=15% Similarity=0.171 Sum_probs=233.6
Q ss_pred CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccC------CCCCCcchHHHHHHHHHHHHhcCCCCCcccc
Q 008257 88 GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVG------SNHLPMRLKEVSATILANVVNSGHDFDSITV 161 (572)
Q Consensus 88 ~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~------~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~ 161 (572)
.+...+..|+++|.|++.++++|+.|++.|++|+|+.+|.+.. .+..++.+|++|+|+|.||+.++...+
T Consensus 44 ~~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k---- 119 (354)
T 3nmw_A 44 PVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK---- 119 (354)
T ss_dssp GGGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHH----
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHH----
Confidence 3446677999999999999999999999999999999996320 001136799999999999997543111
Q ss_pred CCCccccc-hhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHh-cCCCHHHHHHHHH
Q 008257 162 GPDNQTLV-SEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFV-EAPQNDLRLASIE 239 (572)
Q Consensus 162 ~~~~~~l~-~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~ 239 (572)
..+. ..|+||.|+++|+++++++|..++++|.+|+...+ +..+..|.+.|+||+|+++| +++++++++.|++
T Consensus 120 ----~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~ 193 (354)
T 3nmw_A 120 ----ATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD--VNSKKTLREVGSVKALMECALEVKKESTLKSVLS 193 (354)
T ss_dssp ----HHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCC--HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred ----HHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCC--HHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHH
Confidence 1232 46779999999999999999999999999998632 35788999999999999975 6678899999999
Q ss_pred HHHHcCCCCChhHHHHHh-cccCChhhHHhhhccCCCC--hHHHHHHHHHHhcCCC---CcHHHHHHHHhCCChHHHHHH
Q 008257 240 LIQNLSPHMGHELADALR-GAVGQLGSLIRVISENVGI--SKEQAAAVGLLAELPE---RDLGLTRQMLDEGAFGLIFSR 313 (572)
Q Consensus 240 ~L~~Ls~~~~~~~~~~i~-~~~g~l~~Lv~lL~~~~~~--~~~~~~A~~~L~~L~~---~~~~~~~~l~~~g~l~~Lv~l 313 (572)
+|++|+.+.+ +....+. .. |+++.|+++|.++++. .+++..|+++|+||+. .+++.++.+.++|++|+|+.+
T Consensus 194 aL~nLs~~~~-~nk~~i~~~~-Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~l 271 (354)
T 3nmw_A 194 ALWNLSAHCT-ENKADICAVD-GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 271 (354)
T ss_dssp HHHHHHTTCH-HHHHHHHHST-THHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHccCh-hhhHHHHHhc-CcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHH
Confidence 9999998532 2234555 45 9999999999877641 1588999999999985 577888999999999999999
Q ss_pred HhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhcc
Q 008257 314 VKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESK 393 (572)
Q Consensus 314 L~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~ 393 (572)
|++. ...+++.|+++|++++.. +++.++.+.+.|++|+|+++|+++ ++.+|+.|+++|.||+.+.+
T Consensus 272 L~~~----------~~~v~~~A~~aL~nLa~~---~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 272 LKSH----------SLTIVSNACGTLWNLSAR---NPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp TTCS----------CHHHHHHHHHHHHHHTSS---CHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCC
T ss_pred HcCC----------ChHHHHHHHHHHHHHhCC---CHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCH
Confidence 9862 356799999999999963 899999999999999999999998 99999999999999998765
Q ss_pred cc
Q 008257 394 NL 395 (572)
Q Consensus 394 ~~ 395 (572)
..
T Consensus 338 ~~ 339 (354)
T 3nmw_A 338 AK 339 (354)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=2.1e-32 Score=278.34 Aligned_cols=266 Identities=18% Similarity=0.122 Sum_probs=223.6
Q ss_pred HHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHcc-----------CCHHHHHHHHHHHHHhccCc-chhHHHH-hh
Q 008257 10 LTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILE-----------GPQETKLSLAAFLGDLALNS-DVKVLVA-RT 76 (572)
Q Consensus 10 ~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~-----------~~~~~~~~aa~~L~~l~~~~-~~k~~i~-~~ 76 (572)
..++.|..+|.+++.+++|++.|++.|++++|+.+|.. .++++|.+|+++|.+++.++ ++|..|. ..
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 34557999999999999999999999999999999952 24678999999999999855 5888885 45
Q ss_pred hH-HHHHHhcccCCHHHHHHHHHHHHHhhcC--CCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC
Q 008257 77 VG-SCLINIMKSGNMQAREAALKALNQISSC--EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG 153 (572)
Q Consensus 77 g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~--~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~ 153 (572)
|+ |+||++|+++++++|+.|+++|+||+.. ++++..+++.|+||+|+++|.+. .+..+++.|+++|+||+.++
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~----~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV----KKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcC----CCHHHHHHHHHHHHHHHccC
Confidence 75 9999999999999999999999999974 46788999999999999986442 13678888888888887632
Q ss_pred CCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHH-hcCChHHHHHHhcCCCH-
Q 008257 154 HDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIK-SSGATISLVQFVEAPQN- 231 (572)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~- 231 (572)
++.+..|. ..|+++.|+.+|.++++
T Consensus 203 -----------------------------------------------------~~nk~~i~~~~Gai~~Lv~lL~~~~~~ 229 (354)
T 3nmw_A 203 -----------------------------------------------------TENKADICAVDGALAFLVGTLTYRSQT 229 (354)
T ss_dssp -----------------------------------------------------HHHHHHHHHSTTHHHHHHHHTTCCCSS
T ss_pred -----------------------------------------------------hhhhHHHHHhcCcHHHHHHHhccCCCc
Confidence 12345555 78999999999987754
Q ss_pred ---HHHHHHHHHHHHcCCC--CChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCC
Q 008257 232 ---DLRLASIELIQNLSPH--MGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGA 306 (572)
Q Consensus 232 ---~v~~~a~~~L~~Ls~~--~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~ 306 (572)
++++.|+++|++|+.+ ...+..+.+.+. |+++.|+++|.+++. .++..|+++|+||+.++++.++.++++|+
T Consensus 230 ~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~-g~i~~Lv~lL~~~~~--~v~~~A~~aL~nLa~~~~~~~~~i~~~G~ 306 (354)
T 3nmw_A 230 NTLAIIESGGGILRNVSSLIATNEDHRQILREN-NCLQTLLQHLKSHSL--TIVSNACGTLWNLSARNPKDQEALWDMGA 306 (354)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT-THHHHHHHHTTCSCH--HHHHHHHHHHHHHTSSCHHHHHHHHHTTH
T ss_pred ccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc-CCHHHHHHHHcCCCh--HHHHHHHHHHHHHhCCCHHHHHHHHHCCC
Confidence 5999999999999961 133445667777 999999999998885 89999999999999878889899999999
Q ss_pred hHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhcc
Q 008257 307 FGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFV 345 (572)
Q Consensus 307 l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~ 345 (572)
+|+|+.+|++. +..+++.|+++|.+++..
T Consensus 307 i~~Lv~LL~s~----------~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 307 VSMLKNLIHSK----------HKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHTTTTCS----------SHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCC----------CHHHHHHHHHHHHHHHcC
Confidence 99999999762 456789999999999974
No 27
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.8e-27 Score=253.67 Aligned_cols=468 Identities=11% Similarity=0.059 Sum_probs=321.0
Q ss_pred CCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCc-chhHHHHhhhHHHHHHhc
Q 008257 7 ENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNS-DVKVLVARTVGSCLINIM 85 (572)
Q Consensus 7 ~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~-~~k~~i~~~g~~~Lv~lL 85 (572)
.+......+.+.|...+.++..+.++ ...+++.|...+++ .+.|..|+-.|..+.... .....+.+ -++.++++|
T Consensus 268 ~~~~~~~a~L~lLsaACi~~~cR~~I-~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~-La~~~~~~L 343 (778)
T 3opb_A 268 QDLQFTKELLRLLSSACIDETMRTYI-TENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQ-LSEIFINAI 343 (778)
T ss_dssp CCHHHHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHH-HHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHhCCcHHHHHH-HHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHH-HHHHHHHHH
Confidence 45666777788888888777665555 66788999988865 578889999999887632 22222222 238899999
Q ss_pred ccCCHHHHHHHHHHHHHhhcCCCcHHHHH-HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCC
Q 008257 86 KSGNMQAREAALKALNQISSCEPSAKVLI-HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPD 164 (572)
Q Consensus 86 ~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv-~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~ 164 (572)
..++.+.++.|+..|..|+.+++.++.++ +.|.++.|+++++.. .+..+..-++.+|.|++.+.+.... .
T Consensus 344 ~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~----~d~s~~Ygal~IL~NLt~~~~~~~~-----e 414 (778)
T 3opb_A 344 SRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQ----KMTHCLYGLLVIMANLSTLPEEXXX-----X 414 (778)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTT----CCTTHHHHHHHHHHHTTCCCCCCCC-----C
T ss_pred hcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCC----CCchHHHHHHHHHHHhcCCCcccch-----h
Confidence 98887779999999999999999998888 677799999999852 1367899999999999886543111 0
Q ss_pred ccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHc
Q 008257 165 NQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNL 244 (572)
Q Consensus 165 ~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~L 244 (572)
..-+..|-.+.+...|+.+.... .+ ....+..+..+..+.++|++|.|+.++.++++.+|+.|+++|.+|
T Consensus 415 ------~~~l~~Lk~~A~~~~p~~~~~d~-~~---~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nL 484 (778)
T 3opb_A 415 ------XXXXXXXXXXXXXXXPAADKVGA-EK---AAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNI 484 (778)
T ss_dssp ------CC------------------CCT-HH---HHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHH
T ss_pred ------hhhhhhhhhhccccCcccCcccc-cc---cchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 01122233222222222211000 00 000000012567788999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhcccCChhhHHhhhccCCCC-hHHHHHHHHHHhcCCC-CcHHHHHHHHh---CCChHHHHHHHhhhcc
Q 008257 245 SPHMGHELADALRGAVGQLGSLIRVISENVGI-SKEQAAAVGLLAELPE-RDLGLTRQMLD---EGAFGLIFSRVKSIQL 319 (572)
Q Consensus 245 s~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~-~~~~~~A~~~L~~L~~-~~~~~~~~l~~---~g~l~~Lv~lL~~~~~ 319 (572)
+.+ .+.+..+... |+++.|+.+|.+.+.. ...+..|+.+|.+|.. .++.. .|-. .|++|+|+.+|....
T Consensus 485 S~d--~~~R~~lvqq-Gal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~- 558 (778)
T 3opb_A 485 TRS--KNFIPQLAQQ-GAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRST- 558 (778)
T ss_dssp HTS--GGGHHHHHHT-THHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSS-
T ss_pred cCC--HHHHHHHHHC-CCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCC-
Confidence 966 3344567776 9999999999988641 1378999999999874 34443 2311 399999999998311
Q ss_pred CCCC---CCcc-hh-hHHHHHHHHHHHHhccCCCC---hHHHHHHHHc-CchHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 008257 320 GETR---GSRF-VT-PFLEGLLSVLARVTFVLSDE---PDAIALCCEH-NLAALFIELLQSNGLDKVQMVSATALENLSL 390 (572)
Q Consensus 320 ~~~~---~~~~-~~-~~~e~a~~aL~~l~~~~~~~---~~~~~~i~~~-g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~ 390 (572)
+... ..+. .. --+..|+.||.|++.. .+ .+.++.++++ |++|.|.++|.++ ++.+|+.|+++++||+.
T Consensus 559 ~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~--~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 559 PVDDNPLHNDEQIKLTDNYEALLALTNLASS--ETSDGEEVCKHIVSTKVYWSTIENLMLDE-NVPLQRSTLELISNMMS 635 (778)
T ss_dssp SCSSCC---CCCCCHHHHHHHHHHHHHHHHC--CSHHHHHHHHHHHHSHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHT
T ss_pred CcccccccccccccHHHHHHHHHHHHHHhcC--CcccchHHHHHHHHhcCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhC
Confidence 1000 0000 01 1144699999999964 22 2567778885 9999999999998 89999999999999987
Q ss_pred hccccC-CCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHH
Q 008257 391 ESKNLT-KLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALST 469 (572)
Q Consensus 391 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 469 (572)
+..... +.. .. .+ -...+.+++||.|+++.+.+++.+|++||.+
T Consensus 636 ~~e~i~~k~~-------------~~-------------------~~---~~~~~rL~lLV~Ll~s~D~~~r~AAagALAn 680 (778)
T 3opb_A 636 HPLTIAAKFF-------------NL-------------------EN---PQSLRNFNILVKLLQLSDVESQRAVAAIFAN 680 (778)
T ss_dssp SGGGTGGGTS-------------CC-------------------SS---HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHH-------------hh-------------------cC---chhhccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 543210 100 00 00 0123469999999999999999999999999
Q ss_pred hhhcCccchhhHHHHHhc-CChHHHHHHHhhc--CCHHHHHHHHHHHHHHHc----c--hhhhhhhcCCCCchHHHHHHh
Q 008257 470 VIDDGVDIEQGVMVLCEA-QGIKPILDVLLEK--RTENLQRRAVWVVERILR----T--DDIAYEVSGDPNVSTALVDAF 540 (572)
Q Consensus 470 l~~~~~~~~~~~~~i~~~-g~i~~L~~lL~~~--~~~~~~~~a~~~l~~l~~----~--~~~~~~~~~~~~~~~~Lv~ll 540 (572)
+....+ ..+..+.+. +||..++++++ . .+++++.+++.++.++++ + ++....+..+......|.+++
T Consensus 681 Lts~~~---~ia~~ll~~~~gi~~Ll~lL~-~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 756 (778)
T 3opb_A 681 IATTIP---LIAKELLTKKELIENAIQVFA-DQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSL 756 (778)
T ss_dssp HHHHCH---HHHHHHTTCHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHH
T ss_pred hcCCCh---HHHHHHHHccccHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHH
Confidence 964322 346677777 89999999995 6 899999999999999996 2 233345554555556788888
Q ss_pred hcCCc
Q 008257 541 QHADY 545 (572)
Q Consensus 541 ~~~~~ 545 (572)
++++.
T Consensus 757 k~~~~ 761 (778)
T 3opb_A 757 KRGDS 761 (778)
T ss_dssp SSSSS
T ss_pred hCCCc
Confidence 77653
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=4.2e-25 Score=214.56 Aligned_cols=241 Identities=20% Similarity=0.253 Sum_probs=211.8
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhcCCC-cHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCC
Q 008257 78 GSCLINIMKSGNMQAREAALKALNQISSCEP-SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDF 156 (572)
Q Consensus 78 ~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~-~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~ 156 (572)
+|.|+++|+++++++|..|+++|.+++..++ ++..+++.|++|+|+++|.+. +..+++.|+++|+|++.++
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~v~~~a~~~L~~l~~~~--- 75 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-----DSEVQKEAARALANIASGP--- 75 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTSC---
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-----CHHHHHHHHHHHHHHHcCC---
Confidence 4999999999999999999999999998765 788999999999999999864 2788999999999987532
Q ss_pred CccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHH
Q 008257 157 DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLA 236 (572)
Q Consensus 157 ~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 236 (572)
+..+..+.+.|+++.|+.+|++++++++..
T Consensus 76 --------------------------------------------------~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~ 105 (252)
T 4hxt_A 76 --------------------------------------------------DEAIKAIVDAGGVEVLVKLLTSTDSEVQKE 105 (252)
T ss_dssp --------------------------------------------------HHHHHHHHHTTHHHHHHHHTTCSSHHHHHH
T ss_pred --------------------------------------------------hHHHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence 135677788999999999999999999999
Q ss_pred HHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhh
Q 008257 237 SIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS 316 (572)
Q Consensus 237 a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~ 316 (572)
|+++|.+|+.+. .+..+.+.+. |+++.|+++|.+++. .++..|+++|++++.+++..++.+.+.|+++.|+.+|.+
T Consensus 106 a~~~L~~l~~~~-~~~~~~~~~~-~~i~~L~~~l~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 181 (252)
T 4hxt_A 106 AARALANIASGP-DEAIKAIVDA-GGVEVLVKLLTSTDS--EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS 181 (252)
T ss_dssp HHHHHHHHTTSC-HHHHHHHHHT-THHHHHHHHTTCSCH--HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC-HHHHHHHHHC-CCHHHHHHHHcCCCH--HHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCC
Confidence 999999999763 3444566666 999999999998885 899999999999999888887899999999999999985
Q ss_pred hccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccc
Q 008257 317 IQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKN 394 (572)
Q Consensus 317 ~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~ 394 (572)
.+..+++.++++|.+++.. +++.++.+.+.|++|.|+++++++ ++.+|+.|+++|.+++.....
T Consensus 182 ----------~~~~v~~~a~~~L~~l~~~---~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 182 ----------TDSEVQKEAARALANIASG---PTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp ----------SCHHHHHHHHHHHHHHTTS---BHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHTCBC
T ss_pred ----------CCHHHHHHHHHHHHHHHcC---CHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHHHHcCCCc
Confidence 2467889999999999963 888999999999999999999998 899999999999999886553
No 29
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2e-24 Score=233.80 Aligned_cols=433 Identities=15% Similarity=0.116 Sum_probs=314.7
Q ss_pred HHHHHHHHhcc-CcchhHHH-HhhhH-HHHHHhcccCC-HHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccC
Q 008257 55 SLAAFLGDLAL-NSDVKVLV-ARTVG-SCLINIMKSGN-MQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVG 130 (572)
Q Consensus 55 ~aa~~L~~l~~-~~~~k~~i-~~~g~-~~Lv~lL~s~~-~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~ 130 (572)
.+..+|..+.- ..+....+ -..|. +.|.+.+.++. ..+...++..|.. +..+++++..+..++++.|.+++++
T Consensus 231 ~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsa-ACi~~~cR~~I~~~~~~~L~~~l~~-- 307 (778)
T 3opb_A 231 IIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSS-ACIDETMRTYITENYLQLLERSLNV-- 307 (778)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHH-HhCCcHHHHHHHHhHHHHHHHHhcc--
Confidence 34444444433 33333333 34566 88888886654 4444555555544 4455555555577888999999964
Q ss_pred CCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHH
Q 008257 131 SNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVV 210 (572)
Q Consensus 131 ~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~ 210 (572)
..+|..|+-+|..+....... ........+.+.+.|..++.+-+..|+..|..++.++ +++
T Consensus 308 -----~~ir~lAavvL~KL~~~~~~~----------~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~----~VK 368 (778)
T 3opb_A 308 -----EDVQIYSALVLVKTWSFTKLT----------CINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKA----SVK 368 (778)
T ss_dssp -----GGGHHHHHHHHHHHTGGGTCT----------TCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSS----HHH
T ss_pred -----HHHHHHHHHHHHHHhcCCCCC----------cCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCH----HHH
Confidence 478999999999998754321 1122457788888888877677999999999999987 567
Q ss_pred HHHHhcCC-hHHHHHHhcC-CCHHHHHHHHHHHHHcCCCCCh---------------------------------h----
Q 008257 211 SAIKSSGA-TISLVQFVEA-PQNDLRLASIELIQNLSPHMGH---------------------------------E---- 251 (572)
Q Consensus 211 ~~i~~~g~-i~~Lv~lL~~-~~~~v~~~a~~~L~~Ls~~~~~---------------------------------~---- 251 (572)
..+++..+ ++.|+.+++. ++..+.-.++.+|.|++...+. +
T Consensus 369 e~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~ 448 (778)
T 3opb_A 369 IMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLF 448 (778)
T ss_dssp HHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHH
Confidence 77777655 9999999995 6677888999999999853110 0
Q ss_pred HHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhH
Q 008257 252 LADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPF 331 (572)
Q Consensus 252 ~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~ 331 (572)
..+.+.+. |++|.|+.++.++++ ..+..|+++|.+++. +++++..+++.|++++|+.+|.+... .....
T Consensus 449 ~~~~l~ea-GvIp~Lv~Ll~S~s~--~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~-------~~~~~ 517 (778)
T 3opb_A 449 NEKYILRT-ELISFLKREMHNLSP--NCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQD-------IGEPI 517 (778)
T ss_dssp HHHHTTTT-THHHHHHHHGGGSCH--HHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC----------CCHH
T ss_pred HHHHHHHC-cCHHHHHHHHcCCCH--HHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCC-------cchHH
Confidence 12334555 999999999999885 899999999999987 68899999999999999999986321 01135
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHH-HHcCchHHHHHHhcc-CCcH------------HHHHHHHHHHHHhhhhccccCC
Q 008257 332 LEGLLSVLARVTFVLSDEPDAIALC-CEHNLAALFIELLQS-NGLD------------KVQMVSATALENLSLESKNLTK 397 (572)
Q Consensus 332 ~e~a~~aL~~l~~~~~~~~~~~~~i-~~~g~i~~Lv~lL~~-~~~~------------~vk~~Aa~aL~~ls~~~~~~~~ 397 (572)
++.|+.+|.+++.. .||...-.- .-.|++|+|++||.. +... ..+..|+.||.||+..+.+...
T Consensus 518 k~~AA~ALArLlis--~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E 595 (778)
T 3opb_A 518 RILGCRALTRMLIF--TNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGE 595 (778)
T ss_dssp HHHHHHHHHHHHHT--SCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHHHhc--CCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccch
Confidence 78999999999855 577652100 013899999999983 2111 3378999999999975421000
Q ss_pred CCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhc-cchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCcc
Q 008257 398 LPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEG-HAVEKLIALLDHTNEKVVEASLAALSTVIDDGVD 476 (572)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~-g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~ 476 (572)
.....+++. |+++.|+++|.+.++.++.+|+.++++|+.+++.
T Consensus 596 ------------------------------------~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~ 639 (778)
T 3opb_A 596 ------------------------------------EVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLT 639 (778)
T ss_dssp ------------------------------------HHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGG
T ss_pred ------------------------------------HHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHH
Confidence 001236674 9999999999999999999999999999986531
Q ss_pred chhhHHHHHh------cCChHHHHHHHhhcCCHHHHHHHHHHHHHHH-cchhhhhhhcCCCCchHHHHHHhhc--CCchh
Q 008257 477 IEQGVMVLCE------AQGIKPILDVLLEKRTENLQRRAVWVVERIL-RTDDIAYEVSGDPNVSTALVDAFQH--ADYRT 547 (572)
Q Consensus 477 ~~~~~~~i~~------~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~Lv~ll~~--~~~~~ 547 (572)
. ...+.+ .+++++|+.++ .++|+..|+.|+|+|.++. .++.+...+....+....|++++++ +++++
T Consensus 640 i---~~k~~~~~~~~~~~rL~lLV~Ll-~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l 715 (778)
T 3opb_A 640 I---AAKFFNLENPQSLRNFNILVKLL-QLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIEL 715 (778)
T ss_dssp T---GGGTSCCSSHHHHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHH
T ss_pred H---HHHHHhhcCchhhccHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHH
Confidence 1 012222 22488999999 6999999999999999996 5677767776663333599999999 89999
Q ss_pred HHHHHHHHHhhcccC
Q 008257 548 RQIAERALKHIDKIP 562 (572)
Q Consensus 548 ~~~Aa~aL~~L~~~~ 562 (572)
+.+++.++.+|..+.
T Consensus 716 ~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 716 RQRLLMLFFGLFEVI 730 (778)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999743
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=4.4e-26 Score=222.06 Aligned_cols=229 Identities=21% Similarity=0.270 Sum_probs=203.6
Q ss_pred CCCCCCHHHHHHHHHHHHh-hccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-H
Q 008257 3 SSKSENLLTVEKAEKTLAN-LEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-S 79 (572)
Q Consensus 3 ~~~s~~~~~~~~A~~~L~~-L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~ 79 (572)
+++|+|+.++..|+.+|.+ ++.+++++..+++.|++++|+++|++++++++..|+++|.+++. +++++..+.+.|+ |
T Consensus 20 ~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 99 (252)
T 4db8_A 20 QLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 99 (252)
T ss_dssp HHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Confidence 5689999999999999966 45578889999999999999999999999999999999999998 6788888888888 9
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHhhcCCCcH-HHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257 80 CLINIMKSGNMQAREAALKALNQISSCEPSA-KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS 158 (572)
Q Consensus 80 ~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~-~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~ 158 (572)
.|+++|+++++++++.|+++|.+|+.+++++ ..+++.|++|.|+++|.+. +..++..|+++|+||+.++...
T Consensus 100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~-- 172 (252)
T 4db8_A 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-----NEQILQEALWALSNIASGGNEQ-- 172 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-----CHHHHHHHHHHHHHHTTSCHHH--
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC-----CHHHHHHHHHHHHHHHcCChHH--
Confidence 9999999999999999999999999998887 8888999999999999764 3789999999999998754221
Q ss_pred cccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHH
Q 008257 159 ITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASI 238 (572)
Q Consensus 159 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~ 238 (572)
...+...|+++.|+++|.+++++++..++++|.+++... +..+..+.+.|+++.|+.++.++++++|+.|+
T Consensus 173 ------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~ 243 (252)
T 4db8_A 173 ------IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG---NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQ 243 (252)
T ss_dssp ------HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHH
T ss_pred ------HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC---HHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHH
Confidence 124566899999999999999999999999999999754 35677888999999999999999999999999
Q ss_pred HHHHHcCCC
Q 008257 239 ELIQNLSPH 247 (572)
Q Consensus 239 ~~L~~Ls~~ 247 (572)
++|.+|+.+
T Consensus 244 ~~L~~l~~~ 252 (252)
T 4db8_A 244 EALEKLQSH 252 (252)
T ss_dssp HHHHTTC--
T ss_pred HHHHHHhcC
Confidence 999999853
No 31
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=2.4e-24 Score=209.15 Aligned_cols=243 Identities=20% Similarity=0.285 Sum_probs=213.9
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChh
Q 008257 172 DIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHE 251 (572)
Q Consensus 172 ~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~ 251 (572)
+.|+.|+++|.++++++|..++++|.+++.... +.+..+.+.|+++.|+.+|++++++++..|+++|.+++.+. .+
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~ 77 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPA---SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-DE 77 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH---HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc---HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hH
Confidence 469999999999999999999999999998763 46788899999999999999999999999999999999773 34
Q ss_pred HHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhH
Q 008257 252 LADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPF 331 (572)
Q Consensus 252 ~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~ 331 (572)
..+.+.+. |+++.|+++|.+++. +++..|+++|++++..+++.++.+.+.|+++.|+.+|++ .+..+
T Consensus 78 ~~~~~~~~-~~i~~l~~ll~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~----------~~~~~ 144 (252)
T 4hxt_A 78 AIKAIVDA-GGVEVLVKLLTSTDS--EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS----------TDSEV 144 (252)
T ss_dssp HHHHHHHT-THHHHHHHHTTCSSH--HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC----------SCHHH
T ss_pred HHHHHHHC-CCHHHHHHHHcCCCH--HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC----------CCHHH
Confidence 45567766 999999999998775 899999999999997788888999999999999999986 24677
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcccc
Q 008257 332 LEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIF 411 (572)
Q Consensus 332 ~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~ 411 (572)
++.++++|.+++.. +++.++.+.+.|++|.|+++|.++ ++.++..|+++|.+++...+.
T Consensus 145 ~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~----------------- 203 (252)
T 4hxt_A 145 QKEAARALANIASG---PDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTS----------------- 203 (252)
T ss_dssp HHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHH-----------------
T ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHH-----------------
Confidence 89999999999963 778888899999999999999998 899999999999999853221
Q ss_pred ccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCc
Q 008257 412 PCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGV 475 (572)
Q Consensus 412 ~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~ 475 (572)
....+++.|+++.|++++++++++++..|+++|.+|..+..
T Consensus 204 -----------------------~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 204 -----------------------AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp -----------------------HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred -----------------------HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 12236789999999999999999999999999999997654
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=5.4e-25 Score=214.30 Aligned_cols=237 Identities=23% Similarity=0.288 Sum_probs=206.2
Q ss_pred CCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhc-CCCcHHH
Q 008257 36 GRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISS-CEPSAKV 112 (572)
Q Consensus 36 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~-~~~~~~~ 112 (572)
..++++++.|+++++++|..|+++|.++.. +++++..+.+.|+ |.|+++|++++++++..|+++|.+|+. +++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 458999999999999999999999987655 6777888888888 999999999999999999999999998 5677889
Q ss_pred HHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHH
Q 008257 113 LIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKL 192 (572)
Q Consensus 113 iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a 192 (572)
+++.|++|+|+++|+++ ++.+++.|+++|+||+.+..... ..+...|+++.|+++|.+++++++..+
T Consensus 92 i~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~--------~~~~~~~~i~~L~~lL~~~~~~v~~~a 158 (252)
T 4db8_A 92 VIDAGALPALVQLLSSP-----NEQILQEALWALSNIASGGNEQI--------QAVIDAGALPALVQLLSSPNEQILQEA 158 (252)
T ss_dssp HHHTTHHHHHHHGGGCS-----CHHHHHHHHHHHHHHTTSCHHHH--------HHHHHTTHHHHHHHGGGCSCHHHHHHH
T ss_pred HHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHhhcCCchHH--------HHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999874 37999999999999987543210 246678999999999999999999999
Q ss_pred HHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhcc
Q 008257 193 LQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISE 272 (572)
Q Consensus 193 ~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~ 272 (572)
+++|.+++..+. ..+..+.+.|+++.|+.+|.++++.++..|+++|.+|+.+.+ +..+.+.+. |+++.|++++.+
T Consensus 159 ~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~-g~i~~L~~ll~~ 233 (252)
T 4db8_A 159 LWALSNIASGGN---EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQKQAVKEA-GALEKLEQLQSH 233 (252)
T ss_dssp HHHHHHHTTSCH---HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH-HHHHHHHHT-THHHHHHTTTTC
T ss_pred HHHHHHHHcCCh---HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHC-CcHHHHHHHhCC
Confidence 999999998753 466778899999999999999999999999999999997643 444566666 999999999999
Q ss_pred CCCChHHHHHHHHHHhcCCC
Q 008257 273 NVGISKEQAAAVGLLAELPE 292 (572)
Q Consensus 273 ~~~~~~~~~~A~~~L~~L~~ 292 (572)
++. +++..|+++|++|+.
T Consensus 234 ~~~--~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 234 ENE--KIQKEAQEALEKLQS 251 (252)
T ss_dssp SSS--HHHHTHHHHHHTTC-
T ss_pred CCH--HHHHHHHHHHHHHhc
Confidence 886 999999999999975
No 33
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=2.4e-24 Score=204.39 Aligned_cols=194 Identities=16% Similarity=0.165 Sum_probs=165.0
Q ss_pred CcHHHHHHHccCCH--HHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhc-CCCcHH
Q 008257 37 RLQPLLTQILEGPQ--ETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISS-CEPSAK 111 (572)
Q Consensus 37 ~i~~Lv~~L~~~~~--~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~-~~~~~~ 111 (572)
.+++|+++|+++++ ++|..|+++|.+++. ++++|..|.+.|+ |+||++|+++++++|+.|+++|+||+. +++|+.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 57999999999988 889999999999997 7789999998888 999999999999999999999999998 578899
Q ss_pred HHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHh---------
Q 008257 112 VLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS--------- 182 (572)
Q Consensus 112 ~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~--------- 182 (572)
.|+++|+||+|+++|++. .+.++++.|+.+|+||+.++.. ...+. +++|++|++++.
T Consensus 89 ~I~~~GaI~~Lv~lL~~~----~~~~~~e~a~~aL~nLS~~~~~---------k~~i~-~~~i~~Lv~ll~~p~sG~~~~ 154 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQT----RDLETKKQITGLLWNLSSNDKL---------KNLMI-TEALLTLTENIIIPFSGWPEG 154 (233)
T ss_dssp HHHHTTHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTSGGG---------HHHHH-HHHHHHHCCCCCHHHHCCCGG
T ss_pred HHHHcCCHHHHHHHHccC----CCHHHHHHHHHHHHHHHcChhh---------HHHHH-hccHHHHHHHHhccccCCccc
Confidence 999999999999999852 1378999999999999875422 12344 457999998763
Q ss_pred -------cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcC-ChHHHHHHhcCC------CHHHHHHHHHHHHHcCCC
Q 008257 183 -------NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSG-ATISLVQFVEAP------QNDLRLASIELIQNLSPH 247 (572)
Q Consensus 183 -------~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g-~i~~Lv~lL~~~------~~~v~~~a~~~L~~Ls~~ 247 (572)
+.+++++.++..+|++|+... ++.|+.|++++ +|+.||.+++.. +...+++|+++|+||+..
T Consensus 155 ~~~~~~~~~~~~v~~na~~~L~nLss~~---~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 155 DYPKANGLLDFDIFYNVTGCLRNMSSAG---ADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp GCCCCCTTCCHHHHHHHHHHHHHHTTSC---HHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred ccccccccchHHHHHHHHHHHHHHhcCC---HHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 125689999999999999864 36799999875 579999999853 457899999999999965
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=1e-22 Score=192.39 Aligned_cols=198 Identities=23% Similarity=0.280 Sum_probs=173.1
Q ss_pred HcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhc-CCCcH
Q 008257 34 ENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISS-CEPSA 110 (572)
Q Consensus 34 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~-~~~~~ 110 (572)
..|..++|+.+|+++++++|..|+++|.+++. +++++..+.+.|+ |.|+++|+++++++++.|+++|.+|+. +++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 56788999999999999999999999999996 6678888888888 999999999999999999999999996 55678
Q ss_pred HHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHH
Q 008257 111 KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIEC 190 (572)
Q Consensus 111 ~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~ 190 (572)
..+++.|++|+|+++|+++ ++.+++.|+++|+||+.+..+.. ..+...|+++.|+++|++++++++.
T Consensus 90 ~~i~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~--------~~~~~~~~i~~L~~ll~~~~~~v~~ 156 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSP-----NEQILQEALWALSNIASGGNEQI--------QAVIDAGALPALVQLLSSPNEQILQ 156 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTSCHHHH--------HHHHHTTHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCC-----cHHHHHHHHHHHHHHHcCCHHHH--------HHHHHcCcHHHHHHHHcCCCHHHHH
Confidence 8899999999999999864 38999999999999987543211 2456789999999999999999999
Q ss_pred HHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 008257 191 KLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH 247 (572)
Q Consensus 191 ~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~ 247 (572)
.++++|.+++.... ..+..+.+.|+++.|+.++.++++++|+.|+++|.+|+.+
T Consensus 157 ~a~~aL~~l~~~~~---~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 157 EALWALSNIASGGN---EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHHHHTSCH---HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHcCCc---HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 99999999998753 5678889999999999999999999999999999999853
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=1.4e-21 Score=184.67 Aligned_cols=200 Identities=18% Similarity=0.202 Sum_probs=176.9
Q ss_pred hhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 008257 170 SEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMG 249 (572)
Q Consensus 170 ~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~ 249 (572)
..+..+.|+.+|.+++++++..|+++|.+++..+. +.+..+.+.|+++.|+.+|++++++++..|+++|.+++.+.+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~---~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGN---EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH---HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCH---HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence 35789999999999999999999999999997653 567888999999999999999999999999999999997643
Q ss_pred hhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchh
Q 008257 250 HELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVT 329 (572)
Q Consensus 250 ~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~ 329 (572)
+..+.+.+. |+++.|+.+|.+++. .++..|+++|++++.++++..+.+++.|++|.|+.+|++ .+.
T Consensus 87 -~~~~~i~~~-g~i~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----------~~~ 152 (210)
T 4db6_A 87 -EQIQAVIDA-GALPALVQLLSSPNE--QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS----------PNE 152 (210)
T ss_dssp -HHHHHHHHT-TCHHHHHHHTTCSCH--HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC----------SCH
T ss_pred -HHHHHHHHC-CCHHHHHHHHcCCcH--HHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC----------CCH
Confidence 344566666 999999999999885 899999999999998888888889999999999999986 245
Q ss_pred hHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 008257 330 PFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSL 390 (572)
Q Consensus 330 ~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~ 390 (572)
.+++.++++|.+++.. +++.+..+.+.|++|.|++++.++ ++.+|+.|+++|.+++.
T Consensus 153 ~v~~~a~~aL~~l~~~---~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 153 QILQEALWALSNIASG---GNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHHHHHHTS---CHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcC---CcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence 7789999999999963 688999999999999999999998 99999999999999874
No 36
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=9.5e-23 Score=193.39 Aligned_cols=192 Identities=15% Similarity=0.221 Sum_probs=162.3
Q ss_pred CCCCCCCH--HHHHHHHHHHHhhcc-CcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhh
Q 008257 2 TSSKSENL--LTVEKAEKTLANLEK-CENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTV 77 (572)
Q Consensus 2 ~~~~s~~~--~~~~~A~~~L~~L~~-~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g 77 (572)
.+++|+|+ .++..|+..|.+|+. +++++..+++.|+||+|+++|+++++++|..|+++|.+++. ++++|..|.+.|
T Consensus 15 ~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~G 94 (233)
T 3tt9_A 15 SMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELN 94 (233)
T ss_dssp HTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 36788888 888999999999996 78899999999999999999999999999999999999998 678999999998
Q ss_pred H-HHHHHhcc-cCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHh---ccCC--------CCCCcchHHHHHH
Q 008257 78 G-SCLINIMK-SGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLF---TVGS--------NHLPMRLKEVSAT 144 (572)
Q Consensus 78 ~-~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~---s~~~--------~~~~~~~~~~aa~ 144 (572)
+ |+||++|+ +++.++|+.|+.+|++|+..++++..|++. +||+|++++. ++.. ...+++++++|+.
T Consensus 95 aI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~ 173 (233)
T 3tt9_A 95 GVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTG 173 (233)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHH
T ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHHHHHHHH
Confidence 8 99999998 578999999999999999999999998874 6999999763 1110 0123689999999
Q ss_pred HHHHHHhcCCCCCccccCCCccccch-hhhHHHHHHHHhcC------ChhHHHHHHHHHHHccCC
Q 008257 145 ILANVVNSGHDFDSITVGPDNQTLVS-EDIVHNLLHLISNT------GPTIECKLLQVLVGLTSS 202 (572)
Q Consensus 145 ~L~nla~~~~~~~~~~~~~~~~~l~~-~~~i~~Lv~lL~~~------~~~~q~~a~~aL~~l~~~ 202 (572)
+|.||+..+.+.+ +.|.. .|.|+.|+.+++.. +...+++++.+|++|+..
T Consensus 174 ~L~nLss~~~~~R--------~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 174 CLRNMSSAGADGR--------KAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHTTSCHHHH--------HHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHhcCCHHHH--------HHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 9999987543222 34443 57899999999852 557899999999999864
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.87 E-value=1.3e-20 Score=186.62 Aligned_cols=227 Identities=16% Similarity=0.174 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHh-hhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHH
Q 008257 231 NDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIR-VISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGL 309 (572)
Q Consensus 231 ~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~-lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~ 309 (572)
.+-+..|+..|.+++... +.+..+... |+++.|+. +|.+++. .++..|+++|++++.+++..++.+++.|++|+
T Consensus 54 ~e~k~~Al~~L~~lv~~~--dna~~~~~~-G~l~~Lv~~lL~s~~~--~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~ 128 (296)
T 1xqr_A 54 QQEREGALELLADLCENM--DNAADFCQL-SGMHLLVGRYLEAGAA--GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK 128 (296)
T ss_dssp HHHHHHHHHHHHHHHTSH--HHHHHHHHT-THHHHHHHTTTTCSSH--HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHhCh--hhHHHHHHc-CCHHHHHHHHHcCCCH--HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHH
Confidence 457888899999988653 233456666 99999999 9999885 99999999999999988999999999999999
Q ss_pred HHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhh
Q 008257 310 IFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLS 389 (572)
Q Consensus 310 Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls 389 (572)
|+.+|++. ....+++.|+++|++++.+ ++..++.+.+.|++|+|+.+|+++ ++.+|+.|+|+|.+++
T Consensus 129 Ll~LL~~~---------~~~~v~~~A~~ALsnl~~~---~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~ 195 (296)
T 1xqr_A 129 LLRLLDRD---------ACDTVRVKALFAISCLVRE---QEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLL 195 (296)
T ss_dssp HHHHHHHC---------SCHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHccC---------CCHHHHHHHHHHHHHHHcC---CcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence 99999852 1356789999999999964 788888899999999999999998 9999999999999998
Q ss_pred hhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHH
Q 008257 390 LESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALST 469 (572)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 469 (572)
...+. ..-.+++.|++++|++||.++++.+++.|+++|++
T Consensus 196 ~~~~~----------------------------------------~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~ 235 (296)
T 1xqr_A 196 VGHPE----------------------------------------HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCS 235 (296)
T ss_dssp HHCGG----------------------------------------GHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHH
T ss_pred hCChH----------------------------------------HHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 75321 22247899999999999999999999999999999
Q ss_pred hhhcCccchhhHHHHHhcC--ChHH----HHHHHhhcC-CHHHHHHHHHHHHHHHcc
Q 008257 470 VIDDGVDIEQGVMVLCEAQ--GIKP----ILDVLLEKR-TENLQRRAVWVVERILRT 519 (572)
Q Consensus 470 l~~~~~~~~~~~~~i~~~g--~i~~----L~~lL~~~~-~~~~~~~a~~~l~~l~~~ 519 (572)
|+.+.. ...... ..+ .+.. -.+-++.+. ++++++++..++.++|..
T Consensus 236 l~~~~~---~~~~~~-~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~ 288 (296)
T 1xqr_A 236 LVTDFP---QGVREC-REPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSS 288 (296)
T ss_dssp HHTTCH---HHHHHH-HCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-
T ss_pred HHhCCh---hHHHHH-hccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCC
Confidence 997632 111111 111 1211 123333233 478889999999999854
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.85 E-value=1.2e-20 Score=186.86 Aligned_cols=182 Identities=18% Similarity=0.185 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHH-HHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HHHHHhc
Q 008257 9 LLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLT-QILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SCLINIM 85 (572)
Q Consensus 9 ~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~-~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~Lv~lL 85 (572)
.+....|...|.++..+.+|...+.+.|++++|+. +|+++++++|..|+++|++++. ++.++..+.+.|+ |+|+++|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 35677899999999998889999999999999999 9999999999999999999998 5567888888888 9999999
Q ss_pred ccC-CHHHHHHHHHHHHHhhcCCC-cHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCC
Q 008257 86 KSG-NMQAREAALKALNQISSCEP-SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGP 163 (572)
Q Consensus 86 ~s~-~~~~~~~A~~aL~~Ls~~~~-~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~ 163 (572)
+++ +..+++.|+++|.+|+.+.+ ..+.++++|++|+|+.+|+++ +..+|..|+|+|.+++.++.+..
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-----d~~v~~~A~~aLs~L~~~~~~~~------ 202 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-----VQKLKVKSAFLLQNLLVGHPEHK------ 202 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-----CHHHHHHHHHHHHHHHHHCGGGH------
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHHhCChHHH------
Confidence 974 78999999999999997654 467788999999999999874 38999999999999998643222
Q ss_pred CccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCC
Q 008257 164 DNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSP 203 (572)
Q Consensus 164 ~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~ 203 (572)
..+.+.|++++|+.+|.+++++++..++++|.++....
T Consensus 203 --~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 203 --GTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp --HHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred --HHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 35778999999999999999999999999999999874
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.78 E-value=1e-16 Score=169.35 Aligned_cols=398 Identities=13% Similarity=0.126 Sum_probs=273.3
Q ss_pred hhHHHHHHhcccCC-HHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCC
Q 008257 76 TVGSCLINIMKSGN-MQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGH 154 (572)
Q Consensus 76 ~g~~~Lv~lL~s~~-~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~ 154 (572)
+.++.|++-|.+.. .+-|+.|+..|+.++... ..-|-++|+|.|+..|+... .+.++-..+.++|.++...+.
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y---~~~Vg~~~l~~li~~L~~d~---~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY---RLEVGIQAMEHLIHVLQTDR---SDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT---TTHHHHHTHHHHHHHHHSCT---TCHHHHHHHHHHHHHHHCCC-
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh---HHHhhhhhHHHHHHHHhccc---ccHHHHHHHHHHHHHHhCCCC
Confidence 34588888888754 678999999999998642 24567899999999998753 347788889999999865432
Q ss_pred CCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHH-HHHhcCChHHHHHHhcCCCHHH
Q 008257 155 DFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVS-AIKSSGATISLVQFVEAPQNDL 233 (572)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~-~i~~~g~i~~Lv~lL~~~~~~v 233 (572)
+.+...... ....++. . .+.+ .+.+.++|+.|+.+|+..+..+
T Consensus 95 ~~~~~~~~~-------------------~~~~~~~---~--------------~~~d~f~~~~~~i~~Ll~lL~~~df~v 138 (651)
T 3grl_A 95 EEEVEENST-------------------RQSEDLG---S--------------QFTEIFIKQQENVTLLLSLLEEFDFHV 138 (651)
T ss_dssp --------------------------------CHH---H--------------HHHHHHHHSTHHHHHHHHHTTCCCHHH
T ss_pred ccccccccc-------------------ccchHHH---H--------------HHHHHHHcCCccHHHHHHHhcCccHHH
Confidence 211000000 0001110 1 1112 2346789999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHH
Q 008257 234 RLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSR 313 (572)
Q Consensus 234 ~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~l 313 (572)
|.+++.+|..|+.+.+...++.|...+++++.||.+|+.+.+ .+|..|+.+|.+|+.++.++++.+.-+|++++|+++
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE--~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~I 216 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSRE--VIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDI 216 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSH--HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchH--HHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHH
Confidence 999999999999876666888888666999999999998875 899999999999999999998888899999999999
Q ss_pred HhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcH-----HHH-HHHHHHHHH
Q 008257 314 VKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLD-----KVQ-MVSATALEN 387 (572)
Q Consensus 314 L~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-----~vk-~~Aa~aL~~ 387 (572)
++... ..+ .-.+.+.++..|.++... |+.+|..+++.|.+|.|..+|+.+ .+ .-| .+...++.
T Consensus 217 i~~Eg--~~~----Ggivv~DCL~ll~nLLr~---N~sNQ~~FrEt~~i~~L~~LL~~~-~~~~~W~~Qk~~N~~~~L~- 285 (651)
T 3grl_A 217 ITEEG--NSD----GGIVVEDCLILLQNLLKN---NNSNQNFFKEGSYIQRMKPWFEVG-DENSGWSAQKVTNLHLMLQ- 285 (651)
T ss_dssp HHHHT--GGG----SHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTCGGGGGGGGCCC-SCSSCCCHHHHHHHHHHHH-
T ss_pred HHhcC--CCc----cchhHHHHHHHHHHHHhc---CHHHHHHHHHcCCHHHHHHHhCCC-ccccccHHHHHHHHHHHHH-
Confidence 98742 122 234577899999999874 999999999999999999999864 21 112 12111111
Q ss_pred hhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCC--CHhHHHHHHH
Q 008257 388 LSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHT--NEKVVEASLA 465 (572)
Q Consensus 388 ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~v~~~A~~ 465 (572)
+ ++.|..+.. +.. .+..++..+.+.|++++|++++.+. ...++..|+.
T Consensus 286 i----------------------IrlLv~~~~-----~~~---~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~ 335 (651)
T 3grl_A 286 L----------------------VRVLVSPNN-----PPG---ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETIN 335 (651)
T ss_dssp H----------------------HHHHTCTTS-----CHH---HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred H----------------------HHHHhCCCC-----CCC---CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHH
Confidence 1 111100000 000 0113455677999999999999865 6789999999
Q ss_pred HHHHhhhcCccchhhHHHHHhcC-----ChHHHHHH----HhhcCCHHHHHHHHHHHHHHH-cchhhhhhhcC----C--
Q 008257 466 ALSTVIDDGVDIEQGVMVLCEAQ-----GIKPILDV----LLEKRTENLQRRAVWVVERIL-RTDDIAYEVSG----D-- 529 (572)
Q Consensus 466 aL~~l~~~~~~~~~~~~~i~~~g-----~i~~L~~l----L~~~~~~~~~~~a~~~l~~l~-~~~~~~~~~~~----~-- 529 (572)
+++.+..+.. ..++.+.+.. ..+.++.+ +.+.....+|..|+.++..++ ++++.+.++.. .
T Consensus 336 tla~~irgN~---~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~ 412 (651)
T 3grl_A 336 TVSEVIRGCQ---VNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTI 412 (651)
T ss_dssp HHHHHHTTCH---HHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCC
T ss_pred HHHHHHhCCH---HHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCccc
Confidence 9999987654 4455665543 34455554 444556888999999999998 44433322221 0
Q ss_pred ----CCch--HHHHHHhhcCCchhHHHHHHHHHhhccc
Q 008257 530 ----PNVS--TALVDAFQHADYRTRQIAERALKHIDKI 561 (572)
Q Consensus 530 ----~~~~--~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~ 561 (572)
..+. ..|.+-+.+.|+-----|+.+|.++-+.
T Consensus 413 ~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~ 450 (651)
T 3grl_A 413 DATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE 450 (651)
T ss_dssp CCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC
Confidence 1121 2355666667763333588888887664
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.78 E-value=1.2e-16 Score=174.28 Aligned_cols=334 Identities=11% Similarity=0.084 Sum_probs=226.3
Q ss_pred CCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHH
Q 008257 5 KSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLIN 83 (572)
Q Consensus 5 ~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~ 83 (572)
+++++.+++.|..+|.++...-.. .. ...-.++.+..+..+.+...|..++..+..++..-.. .. ...+ |.|..
T Consensus 97 ~~~~~~vR~~a~~~L~~l~~~~~~-~~-~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~--~~-~~~l~~~l~~ 171 (588)
T 1b3u_A 97 TVEETVVRDKAVESLRAISHEHSP-SD-LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS--AV-KAELRQYFRN 171 (588)
T ss_dssp TSSCHHHHHHHHHHHHHHHTTSCH-HH-HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH--HH-HHHHHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHHHHCCH-HH-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH--HH-HHHHHHHHHH
Confidence 456777777777777777653211 11 1112233333444555666777777777776542211 11 2234 88889
Q ss_pred hcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCC
Q 008257 84 IMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGP 163 (572)
Q Consensus 84 lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~ 163 (572)
+++.+++.+|..|+.+|..++..-... ......+|.|..++... ...+|..|+.+|..++.....
T Consensus 172 l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~-----~~~vr~~a~~~l~~l~~~~~~-------- 236 (588)
T 1b3u_A 172 LCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDE-----QDSVRLLAVEACVNIAQLLPQ-------- 236 (588)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCS-----CHHHHTTHHHHHHHHHHHSCH--------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHhCCH--------
Confidence 999999999999999999998654322 23456788888888643 378999999999999864221
Q ss_pred CccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHH
Q 008257 164 DNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQN 243 (572)
Q Consensus 164 ~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~ 243 (572)
....+.++|.+..++.++++.++..++.+|..++..... + ......++.++.+++++++++|..|+++|..
T Consensus 237 ---~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 307 (588)
T 1b3u_A 237 ---EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--E----ITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 307 (588)
T ss_dssp ---HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--H----HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--c----cchhHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 112345788888888888999999999999988754211 1 1124568999999999999999999999999
Q ss_pred cCCCCChhHHH-HHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCC
Q 008257 244 LSPHMGHELAD-ALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGET 322 (572)
Q Consensus 244 Ls~~~~~~~~~-~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~ 322 (572)
++...+.+... .... ..+|.+..++.+++. .+|..++.+|..++..-. ........+|.+..++++
T Consensus 308 ~~~~~~~~~~~~~~~~--~l~p~l~~~l~d~~~--~vR~~a~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d------ 374 (588)
T 1b3u_A 308 FCENLSADCRENVIMS--QILPCIKELVSDANQ--HVKSALASVIMGLSPILG---KDNTIEHLLPLFLAQLKD------ 374 (588)
T ss_dssp HHHTSCTTTHHHHHHH--THHHHHHHHHTCSCH--HHHHHHHTTGGGGHHHHC---HHHHHHHTHHHHHHHHTC------
T ss_pred HHHHhChhhhhhHHHH--HHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHhh---HhHHHHHHHHHHHHHhCC------
Confidence 88654333211 1222 467888888887774 899999999988854111 111223467888888875
Q ss_pred CCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 008257 323 RGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLE 391 (572)
Q Consensus 323 ~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~ 391 (572)
.+..++..++.+|..+.... .++. ....++|.|.++++++ +..+|..++.++..++..
T Consensus 375 ----~~~~Vr~~a~~~l~~l~~~~--~~~~----~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~ 432 (588)
T 1b3u_A 375 ----ECPEVRLNIISNLDCVNEVI--GIRQ----LSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQ 432 (588)
T ss_dssp ----SCHHHHHHHHTTCHHHHHHS--CHHH----HHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHH
T ss_pred ----CchHHHHHHHHHHHHHHHhc--CHHH----HHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHH
Confidence 24567778887777766431 2221 2235789999999887 889999999999988753
No 41
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.77 E-value=5.3e-17 Score=177.20 Aligned_cols=451 Identities=12% Similarity=0.112 Sum_probs=311.1
Q ss_pred CCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHH
Q 008257 5 KSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLIN 83 (572)
Q Consensus 5 ~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~ 83 (572)
+++++..+..|..++..+...-.. .. ....++.+..++++.++.+|..++.+|+.++..-.... . ...+ |.|..
T Consensus 136 ~~~~~~~R~~a~~~l~~~~~~~~~--~~-~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~-~-~~~l~~~l~~ 210 (588)
T 1b3u_A 136 GGDWFTSRTSACGLFSVCYPRVSS--AV-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN-V-KSEIIPMFSN 210 (588)
T ss_dssp TCSSHHHHHHHGGGHHHHTTTSCH--HH-HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHH-H-HHTHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHhcCH--HH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHh-H-HHHHHHHHHH
Confidence 456667777777777777653211 11 22346677788889999999999999999876322211 1 2345 99999
Q ss_pred hcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCC
Q 008257 84 IMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGP 163 (572)
Q Consensus 84 lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~ 163 (572)
++++++..+|..|+.+|..++..-+. .......+|.+.+++... +..+|..|+.+|+.++....
T Consensus 211 ~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~-----~~~vR~~a~~~l~~l~~~~~--------- 274 (588)
T 1b3u_A 211 LASDEQDSVRLLAVEACVNIAQLLPQ--EDLEALVMPTLRQAAEDK-----SWRVRYMVADKFTELQKAVG--------- 274 (588)
T ss_dssp HHTCSCHHHHTTHHHHHHHHHHHSCH--HHHHHHTHHHHHHHHTCS-----SHHHHHHHHHTHHHHHHHHC---------
T ss_pred HhcCCcHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHccCC-----CHHHHHHHHHHHHHHHHHhC---------
Confidence 99999999999999999999864322 123345788888888643 37899999999999986321
Q ss_pred CccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHH
Q 008257 164 DNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQN 243 (572)
Q Consensus 164 ~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~ 243 (572)
........++.++.++++++++++..++.+|..++..... ..+....-...+|.+..+++++++.+|..++++|..
T Consensus 275 --~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~ 350 (588)
T 1b3u_A 275 --PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA--DCRENVIMSQILPCIKELVSDANQHVKSALASVIMG 350 (588)
T ss_dssp --HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT--TTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGG
T ss_pred --cccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCh--hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 0112345789999999999999999999999988765322 111111124567888999999999999999999998
Q ss_pred cCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCC
Q 008257 244 LSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETR 323 (572)
Q Consensus 244 Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~ 323 (572)
++...+.+. ... ..+|.+..++..+++ +++..++..+..+...-.. .......+|.|..++.+.
T Consensus 351 l~~~~~~~~---~~~--~l~p~l~~~l~d~~~--~Vr~~a~~~l~~l~~~~~~---~~~~~~~lp~l~~~~~d~------ 414 (588)
T 1b3u_A 351 LSPILGKDN---TIE--HLLPLFLAQLKDECP--EVRLNIISNLDCVNEVIGI---RQLSQSLLPAIVELAEDA------ 414 (588)
T ss_dssp GHHHHCHHH---HHH--HTHHHHHHHHTCSCH--HHHHHHHTTCHHHHHHSCH---HHHHHHHHHHHHHHHTCS------
T ss_pred HHHHhhHhH---HHH--HHHHHHHHHhCCCch--HHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhcCC------
Confidence 875433331 122 367888999987664 8888888777665431100 011234667777777541
Q ss_pred CCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCC
Q 008257 324 GSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPP 403 (572)
Q Consensus 324 ~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~ 403 (572)
...++..++.+|..++..+ .++ .....++|.+..+|.++ +..+|+.|+.++..++...+.
T Consensus 415 ----~~~vr~~~~~~l~~l~~~~--~~~----~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~--------- 474 (588)
T 1b3u_A 415 ----KWRVRLAIIEYMPLLAGQL--GVE----FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGK--------- 474 (588)
T ss_dssp ----SHHHHHHHHHHHHHHHHHH--CGG----GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCH---------
T ss_pred ----CchHHHHHHHHHHHHHHHc--CHH----HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCc---------
Confidence 3345677777777776321 111 11123578999999988 899999999999988753210
Q ss_pred CCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHH
Q 008257 404 SGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMV 483 (572)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~ 483 (572)
.+ .....+|.|++++.+++..++..++.+++.++..- +...
T Consensus 475 --------------------------------~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~-----~~~~ 515 (588)
T 1b3u_A 475 --------------------------------EW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC-----GQDI 515 (588)
T ss_dssp --------------------------------HH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH-----HHHH
T ss_pred --------------------------------hh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhc-----CHHH
Confidence 01 12347788889999999999999999999998531 1111
Q ss_pred HHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257 484 LCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK 560 (572)
Q Consensus 484 i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~ 560 (572)
.....++.|+.++ .++++.+|..+++++..++..-.. .+.. ..+.+.|.+++.+.|.++|..|+.||..+..
T Consensus 516 -~~~~~~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~-~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 516 -TTKHMLPTVLRMA-GDPVANVRFNVAKSLQKIGPILDN--STLQ-SEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp -HHHHTHHHHHHGG-GCSCHHHHHHHHHHHHHHGGGSCH--HHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHhhC-CCCCchHHHHHHHHHHHHHHHhch--hhhH-HHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 2234678888888 588899999999999999864110 1111 1233467788889999999999999998763
No 42
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.77 E-value=3.2e-15 Score=158.13 Aligned_cols=472 Identities=12% Similarity=0.094 Sum_probs=316.4
Q ss_pred CcHHHHHHHccCC-HHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhccc--CCHHHHHHHHHHHHHhhcCCCc----
Q 008257 37 RLQPLLTQILEGP-QETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKS--GNMQAREAALKALNQISSCEPS---- 109 (572)
Q Consensus 37 ~i~~Lv~~L~~~~-~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s--~~~~~~~~A~~aL~~Ls~~~~~---- 109 (572)
.|+.|+.+++++. .+-|+.|...|..++. +++..++..|.+.|++.|+. ++.+....++..|.++...++.
T Consensus 22 tI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk--~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~ 99 (651)
T 3grl_A 22 TIQKLCDRVASSTLLDDRRNAVRALKSLSK--KYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVE 99 (651)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHTTT--TTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHH--HhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccccc
Confidence 5789999998775 6778899899988864 67778887788999999987 4778889999999887764321
Q ss_pred --------------HHHHH-HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC-CCccccCCCccccchhhh
Q 008257 110 --------------AKVLI-HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD-FDSITVGPDNQTLVSEDI 173 (572)
Q Consensus 110 --------------~~~iv-~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~-~~~~~~~~~~~~l~~~~~ 173 (572)
.+.++ +.+.|+.|+.+|.+. +..+|.++...|..|+.+... .++ .++...++
T Consensus 100 ~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~-----df~vR~~alqlL~~L~~~r~~~~Q~-------~Il~~p~g 167 (651)
T 3grl_A 100 ENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF-----DFHVRWPGVKLLTSLLKQLGPQVQQ-------IILVSPMG 167 (651)
T ss_dssp --------CHHHHHHHHHHHSTHHHHHHHHHTTCC-----CHHHHHHHHHHHHHHHHHSHHHHHH-------HHHHSTTH
T ss_pred ccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc-----cHHHHHHHHHHHHHHHhcCcHHHHH-------HHHhCccc
Confidence 22333 789999999999864 378999999999999976543 111 12345689
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCH----HHHHHHHHHHHHcCCCCC
Q 008257 174 VHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQN----DLRLASIELIQNLSPHMG 249 (572)
Q Consensus 174 i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~v~~~a~~~L~~Ls~~~~ 249 (572)
|+.|+.+|++....+|..++..|..++.++. ++++.+.-.|+++.|+.+++.+.. .+.+.++.+|.+|.+++
T Consensus 168 i~~Lv~lL~d~rE~iRneallLL~~Lt~~n~---~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N- 243 (651)
T 3grl_A 168 VSRLMDLLADSREVIRNDGVLLLQALTRSNG---AIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNN- 243 (651)
T ss_dssp HHHHHGGGGCSSHHHHHHHHHHHHHHHTTCH---HHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHhcCCH---HHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcC-
Confidence 9999999999999999999999999999874 688888889999999999987554 78999999999999884
Q ss_pred hhHHHHHhcccCChhhHHhhhccCCC---ChHHH----HHHHHHHhcCCCC------cHHHHHHHHhCCChHHHHHHHhh
Q 008257 250 HELADALRGAVGQLGSLIRVISENVG---ISKEQ----AAAVGLLAELPER------DLGLTRQMLDEGAFGLIFSRVKS 316 (572)
Q Consensus 250 ~~~~~~i~~~~g~l~~Lv~lL~~~~~---~~~~~----~~A~~~L~~L~~~------~~~~~~~l~~~g~l~~Lv~lL~~ 316 (572)
...+..+++. |+++.|..+|..+.+ |.+.+ ..++.+++-|... ...++..+.+.|+++.|++++..
T Consensus 244 ~sNQ~~FrEt-~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~ 322 (651)
T 3grl_A 244 NSNQNFFKEG-SYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMA 322 (651)
T ss_dssp HHHHHHHHHT-TCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTC
T ss_pred HHHHHHHHHc-CCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 3445678888 999999999986543 32222 2245566666554 34567899999999999999976
Q ss_pred hccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcC-----chHHHHHH----hccCCcHHHHHHHHHHHHH
Q 008257 317 IQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHN-----LAALFIEL----LQSNGLDKVQMVSATALEN 387 (572)
Q Consensus 317 ~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g-----~i~~Lv~l----L~~~~~~~vk~~Aa~aL~~ 387 (572)
.. ....++..++.++..+.. +|+.+|..+.+.. ..|.++.+ +.+.....+|..|+.++..
T Consensus 323 ~~--------~p~~i~~~Al~tla~~ir---gN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~a 391 (651)
T 3grl_A 323 TG--------VPADILTETINTVSEVIR---GCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQC 391 (651)
T ss_dssp SS--------CCHHHHHHHHHHHHHHHT---TCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred CC--------CCHHHHHHHHHHHHHHHh---CCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 21 245677788888888776 4999999988764 34555555 5554478889888888877
Q ss_pred hhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHH
Q 008257 388 LSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAAL 467 (572)
Q Consensus 388 ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 467 (572)
+..+...... .+...+...+. ..+. +. +..|. .|..-|-+.|+--.--|+.+|
T Consensus 392 y~~~N~~~Q~-----------~i~~~llp~~~-----~~~~------~~---~s~g~--ll~~~l~s~d~~~~wfAavil 444 (651)
T 3grl_A 392 FLYKNQKGQG-----------EIVSTLLPSTI-----DATG------NT---VSAGQ--LLCGGLFSTDSLSNWCAAVAL 444 (651)
T ss_dssp HHTTCHHHHH-----------HHHHTTSSCCC-----CCTT------SS---SCHHH--HHHHHHTSSCHHHHHHHHHHH
T ss_pred HHhCCHHHHH-----------HHHHhcCCccc-----ccCC------CC---CCcch--hhhhhhccCchHHHHHHHHHH
Confidence 6543321100 00000100000 0000 00 11121 234455566775545577788
Q ss_pred HHhhhcCccchhhHHHH---HhcCC-----hHHHHHHHhhcCCHHHHHHHHHHHHHHH-cchhhhhhhcCCCCchHHHHH
Q 008257 468 STVIDDGVDIEQGVMVL---CEAQG-----IKPILDVLLEKRTENLQRRAVWVVERIL-RTDDIAYEVSGDPNVSTALVD 538 (572)
Q Consensus 468 ~~l~~~~~~~~~~~~~i---~~~g~-----i~~L~~lL~~~~~~~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~~~~Lv~ 538 (572)
..+..+.+..+.....+ .+.|- |+.+..+|....++.++..-+.+|...+ .++.....|-..+.-.+.|++
T Consensus 445 ~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~ 524 (651)
T 3grl_A 445 AHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTG 524 (651)
T ss_dssp HHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHHHHHHHcCCchHHHHHH
Confidence 88887654221111111 01111 3345566643445665555555555555 445555565444433358888
Q ss_pred Hhhc--C--CchhHHHHHHHHHhhcccCCCC
Q 008257 539 AFQH--A--DYRTRQIAERALKHIDKIPNFS 565 (572)
Q Consensus 539 ll~~--~--~~~~~~~Aa~aL~~L~~~~~~s 565 (572)
.+.+ + +.-++=.++-.|.--..+.+.+
T Consensus 525 ~i~~~~~~~~~lvqGL~a~LLGi~yef~~~~ 555 (651)
T 3grl_A 525 QIAENLGEEEQLVQGLCALLLGISIYFNDNS 555 (651)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHhccCcchHHHHHHHHHHHHHHhhccCCC
Confidence 7743 2 2456767777776666665555
No 43
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.70 E-value=1.2e-15 Score=166.83 Aligned_cols=323 Identities=10% Similarity=0.086 Sum_probs=209.4
Q ss_pred CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHH
Q 008257 4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLIN 83 (572)
Q Consensus 4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~ 83 (572)
++|+|+...+.+--.+..+...+.... .-.+..+.+-|+++++.+|..|..+|+++... + +.+.-.|.+.+
T Consensus 58 ~~s~~~~~Krl~yl~l~~~~~~~~e~~----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~-~----~~~~l~~~l~~ 128 (591)
T 2vgl_B 58 MQTDNLELKKLVYLYLMNYAKSQPDMA----IMAVNSFVKDCEDPNPLIRALAVRTMGCIRVD-K----ITEYLCEPLRK 128 (591)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHSHHHH----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSG-G----GHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHcccCchHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCChH-H----HHHHHHHHHHH
Confidence 467788877777777777665221111 12356777778888999998888888877532 2 22222388999
Q ss_pred hcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCC
Q 008257 84 IMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGP 163 (572)
Q Consensus 84 lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~ 163 (572)
+|.+.++.+|..|+.++.++....+. .+.+.|.+|.|.++|.+. ++.++..|+++|..++....... .
T Consensus 129 ~L~d~~~~VRk~A~~al~~i~~~~p~--~~~~~~~~~~l~~lL~d~-----d~~V~~~A~~aL~~i~~~~~~~~--~--- 196 (591)
T 2vgl_B 129 CLKDEDPYVRKTAAVCVAKLHDINAQ--MVEDQGFLDSLRDLIADS-----NPMVVANAVAALSEISESHPNSN--L--- 196 (591)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHHHHHTTSCS-----CHHHHHHHHHHHHHHTTSCCSCC--S---
T ss_pred HcCCCChHHHHHHHHHHHHHHhhChh--hcccccHHHHHHHHhCCC-----ChhHHHHHHHHHHHHHhhCCCcc--c---
Confidence 99999999999999999999874332 233468899999999753 38999999999999987543210 0
Q ss_pred CccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHH
Q 008257 164 DNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQN 243 (572)
Q Consensus 164 ~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~ 243 (572)
.-...+.++.|+..+...++..|...+++|..++.... +.. ...++.+..++++.++.++..|++++..
T Consensus 197 ---~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~--~~~------~~~l~~l~~~l~~~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 197 ---LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDD--REA------QSICERVTPRLSHANSAVVLSAVKVLMK 265 (591)
T ss_dssp ---CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSH--HHH------HHHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred ---hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCCh--HHH------HHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 11234568888888888899999999999988885432 111 2457888888999999999999999999
Q ss_pred cCCCC--ChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCC
Q 008257 244 LSPHM--GHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGE 321 (572)
Q Consensus 244 Ls~~~--~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~ 321 (572)
+.... +.+..+.+.. ...+.|+.+++ ++. .+|..|+..|..+....++.. .. .+..+ +...
T Consensus 266 l~~~~~~~~~~~~~~~~--~~~~~L~~L~~-~d~--~vr~~aL~~l~~i~~~~p~~~----~~-~~~~~---~~~~---- 328 (591)
T 2vgl_B 266 FLELLPKDSDYYNMLLK--KLAPPLVTLLS-GEP--EVQYVALRNINLIVQKRPEIL----KQ-EIKVF---FVKY---- 328 (591)
T ss_dssp SCCSCCBTTBSHHHHHH--HTHHHHHHHTT-SCH--HHHHHHHHHHHHHHHHCCSTT----TT-CTTTT---SCCT----
T ss_pred HhhccCCCHHHHHHHHH--HHHHHHHHHhc-CCc--cHHHHHHHHHHHHHHhChHHH----HH-HHHhh---eecc----
Confidence 97531 2232233333 36678887765 443 889889888877654222110 00 00000 0000
Q ss_pred CCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 008257 322 TRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSL 390 (572)
Q Consensus 322 ~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~ 390 (572)
.....++..++..|..++ ++++.+. +++.|.+.+++. ++++|+.++++++.++.
T Consensus 329 ----~d~~~Ir~~al~~L~~l~-----~~~nv~~-----iv~~L~~~l~~~-d~~~r~~~v~aI~~la~ 382 (591)
T 2vgl_B 329 ----NDPIYVKLEKLDIMIRLA-----SQANIAQ-----VLAELKEYATEV-DVDFVRKAVRAIGRCAI 382 (591)
T ss_dssp ----TSCHHHHHHHHHHHHHTC-----CSSTHHH-----HHHHHHHHTTSS-CHHHHHHHHHHHHHHHT
T ss_pred ----CChHHHHHHHHHHHHHHC-----ChhhHHH-----HHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 012445556666666665 2222221 244455666665 66666666666666654
No 44
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.68 E-value=3.1e-15 Score=170.90 Aligned_cols=481 Identities=12% Similarity=0.029 Sum_probs=302.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhccCcchHHHHHHc---------CCcHHHHHHHc---cCCHHHHHHHHHHHHHhccCcc
Q 008257 1 MTSSKSENLLTVEKAEKTLANLEKCENNVRQMAEN---------GRLQPLLTQIL---EGPQETKLSLAAFLGDLALNSD 68 (572)
Q Consensus 1 ~~~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~---------g~i~~Lv~~L~---~~~~~~~~~aa~~L~~l~~~~~ 68 (572)
|+|.-..+++..+.-..+|...-+.+.+.+.-++. |....|..++. +.+..+|..|+-.|.+.....-
T Consensus 1 ~~~~w~~~~~~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w 80 (852)
T 4fdd_A 1 MEYEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHF 80 (852)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSG
T ss_pred CCCCCCCChhhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcc
Confidence 55655666666665566666544333333332221 23334455554 5567889899988988654221
Q ss_pred hh-HHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHH
Q 008257 69 VK-VLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATIL 146 (572)
Q Consensus 69 ~k-~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L 146 (572)
.+ ..-.+..+ +.|++.|.++++.+|..++.++..++..+... .-.+.+|.|++.+.+. +..+++.+..+|
T Consensus 81 ~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~---~wp~ll~~L~~~l~~~-----~~~~r~~al~~L 152 (852)
T 4fdd_A 81 QNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ---NWPDLLPKLCSLLDSE-----DYNTCEGAFGAL 152 (852)
T ss_dssp GGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT---TCTTHHHHHHHHHSCS-----SHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc---ccHHHHHHHHHHHcCC-----CHHHHHHHHHHH
Confidence 11 01122356 88888899999999999999999999743110 0145688999999764 378899999999
Q ss_pred HHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHh
Q 008257 147 ANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFV 226 (572)
Q Consensus 147 ~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL 226 (572)
..++...... +.-+.- .-.....++.|++++.+++++++..|+++|..+...... .....+ ...++.|+.++
T Consensus 153 ~~i~~~~~~~--~~~~~~--~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~--~~~~~~--~~~l~~l~~~~ 224 (852)
T 4fdd_A 153 QKICEDSAEI--LDSDVL--DRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ--ALMLHI--DSFIENLFALA 224 (852)
T ss_dssp HHHHHHHTTH--HHHCSS--SSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH--HHHTSH--HHHHHHHHHHH
T ss_pred HHHHHHhHHH--hchhhh--cchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH--HHHHHH--HHHHHHHHHHc
Confidence 9998743211 000000 011356888999999999999999999999988765331 111111 24678888899
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhC--
Q 008257 227 EAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDE-- 304 (572)
Q Consensus 227 ~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~-- 304 (572)
.++++++|..|+++|..++...+..+...+. +.++.+++++.+.++ .++..|+..+..++... ..++ +...
T Consensus 225 ~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~---~l~~~l~~~~~~~~~--~vr~~a~e~l~~l~~~~-~~~~-~~~~~~ 297 (852)
T 4fdd_A 225 GDEEPEVRKNVCRALVMLLEVRMDRLLPHMH---NIVEYMLQRTQDQDE--NVALEACEFWLTLAEQP-ICKD-VLVRHL 297 (852)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH---HHHHHHHHHHTCSSH--HHHHHHHHHHHHHTTST-THHH-HHTTTH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH---HHHHHHHHHccCCcH--HHHHHHHHHHHHHhcch-hHHH-HHHHHH
Confidence 9999999999999999998654332211121 356777788777664 88999998888887632 2222 2221
Q ss_pred -CChHHHHHHHhhhc-------cC--CCCC--Cc-chhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhcc
Q 008257 305 -GAFGLIFSRVKSIQ-------LG--ETRG--SR-FVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQS 371 (572)
Q Consensus 305 -g~l~~Lv~lL~~~~-------~~--~~~~--~~-~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~ 371 (572)
..+|.++..+.... .. +... .. ..-.++..++.+|..++.. .++ .+.. .++|.+.+++++
T Consensus 298 ~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~---~~~---~~~~-~l~~~l~~~l~~ 370 (852)
T 4fdd_A 298 PKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANV---YRD---ELLP-HILPLLKELLFH 370 (852)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHH---HGG---GGHH-HHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHh---ccH---HHHH-HHHHHHHHHhcC
Confidence 23455555542000 00 0000 00 1123466677777777743 111 1111 367888899988
Q ss_pred CCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHh
Q 008257 372 NGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIAL 451 (572)
Q Consensus 372 ~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~l 451 (572)
+ +..+|..|+++|++++........ -.-.+.++.|+++
T Consensus 371 ~-~~~~R~aa~~alg~i~~~~~~~~~-----------------------------------------~~l~~~l~~l~~~ 408 (852)
T 4fdd_A 371 H-EWVVKESGILVLGAIAEGCMQGMI-----------------------------------------PYLPELIPHLIQC 408 (852)
T ss_dssp S-SHHHHHHHHHHHHHTTTTTHHHHG-----------------------------------------GGHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHhcchHHHH-----------------------------------------HHHHHHHHHHHHH
Confidence 8 899999999999999764321100 0123578999999
Q ss_pred hcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc-hhhhhhhcCCC
Q 008257 452 LDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT-DDIAYEVSGDP 530 (572)
Q Consensus 452 L~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~ 530 (572)
|+++++.|+..|+++|++++..-... . ....-.+.++.|++.| .++++.+++.|+++|.+++.. ......+..
T Consensus 409 l~d~~~~Vr~~a~~~l~~l~~~~~~~-~--~~~~~~~ll~~L~~~L-~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~-- 482 (852)
T 4fdd_A 409 LSDKKALVRSITCWTLSRYAHWVVSQ-P--PDTYLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLA-- 482 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHTHHHHHHS-C--TTTTHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHGGGGGGGHH--
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhccc-h--HHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhhHhhHhHHH--
Confidence 99999999999999999998642100 0 0001123467788888 478899999999999999854 211122221
Q ss_pred CchHHHHHHhhcCCchhHHHHHHHHHhhc
Q 008257 531 NVSTALVDAFQHADYRTRQIAERALKHID 559 (572)
Q Consensus 531 ~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~ 559 (572)
.+...|+.+++..+......+..++..+.
T Consensus 483 ~ll~~L~~~l~~~~~~~~~~~~~ai~~l~ 511 (852)
T 4fdd_A 483 YILDTLVFAFSKYQHKNLLILYDAIGTLA 511 (852)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 34457888888777666666777777775
No 45
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.65 E-value=3.5e-15 Score=170.49 Aligned_cols=475 Identities=11% Similarity=0.044 Sum_probs=294.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHh--hhH-H
Q 008257 3 SSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVAR--TVG-S 79 (572)
Q Consensus 3 ~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~--~g~-~ 79 (572)
.++++++.++..|..+|..+.........-.-...++.+...+.+++.++|..++.+|..++..... .+.. .++ +
T Consensus 182 ~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~--~~~~~l~~l~~ 259 (852)
T 4fdd_A 182 FFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD--RLLPHMHNIVE 259 (852)
T ss_dssp TTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH--HHGGGHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHH
Confidence 4567889999999999998876432211111124578888888899999999999999998763221 1111 145 8
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHH--HcCChHHHHHHHh----------cc-CCC--C----CCcchHH
Q 008257 80 CLINIMKSGNMQAREAALKALNQISSCEPSAKVLI--HAGILPPLVKDLF----------TV-GSN--H----LPMRLKE 140 (572)
Q Consensus 80 ~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv--~~G~i~~Lv~lL~----------s~-~~~--~----~~~~~~~ 140 (572)
.++..+++.++.++..|+..+..++.....++.+- -...+|.|+..+. .. .++ + ....++.
T Consensus 260 ~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~ 339 (852)
T 4fdd_A 260 YMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRK 339 (852)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHH
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHH
Confidence 88999999999999999999999987654443221 1234566666552 11 000 0 2246789
Q ss_pred HHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChH
Q 008257 141 VSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATI 220 (572)
Q Consensus 141 ~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~ 220 (572)
.|+.+|..++...++ -....+++.+..++.++++.++..++++|..++..... .... .-.+.++
T Consensus 340 ~a~~~L~~la~~~~~------------~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~--~~~~--~l~~~l~ 403 (852)
T 4fdd_A 340 CSAAALDVLANVYRD------------ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ--GMIP--YLPELIP 403 (852)
T ss_dssp HHHHHHHHHHHHHGG------------GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH--HHGG--GHHHHHH
T ss_pred HHHHHHHHHHHhccH------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH--HHHH--HHHHHHH
Confidence 999999999864210 12245778888888889999999999999999987531 1111 1245789
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHH
Q 008257 221 SLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQ 300 (572)
Q Consensus 221 ~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~ 300 (572)
.|+.++.++++.+|..|+++|.+++...+......... +.++.|++.|.+++. .++..|+++|.+++.........
T Consensus 404 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~--~ll~~L~~~L~d~~~--~vr~~a~~aL~~l~~~~~~~l~~ 479 (852)
T 4fdd_A 404 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLK--PLMTELLKRILDSNK--RVQEAACSAFATLEEEACTELVP 479 (852)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHH--HHHHHHHHHHTCSSH--HHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHH--HHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHhhHhhHh
Confidence 99999999999999999999999885311110001111 467888888877664 89999999999986422111011
Q ss_pred HHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHh---ccCCcHHH
Q 008257 301 MLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELL---QSNGLDKV 377 (572)
Q Consensus 301 l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~~v 377 (572)
.. .+.++.|+.+++.... ....+.-.+++.+..........++... .++|.|++.+ .+. ++.+
T Consensus 480 ~l-~~ll~~L~~~l~~~~~-------~~~~~~~~ai~~l~~~~~~~~~~~~~~~-----~l~p~l~~~~~~l~d~-~~~~ 545 (852)
T 4fdd_A 480 YL-AYILDTLVFAFSKYQH-------KNLLILYDAIGTLADSVGHHLNKPEYIQ-----MLMPPLIQKWNMLKDE-DKDL 545 (852)
T ss_dssp GH-HHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHGGGGCCHHHHH-----HHHHHHHHHHHHSCTT-CTTH
T ss_pred HH-HHHHHHHHHHHHHhCh-------HHHHHHHHHHHHHHHHhhhhhccHHHHH-----HHHHHHHHHHHhcccc-cHHH
Confidence 11 2455666666654210 0111222344444332211001222211 3567777543 344 4445
Q ss_pred HHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhc----
Q 008257 378 QMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLD---- 453 (572)
Q Consensus 378 k~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~---- 453 (572)
+ .+..++..++...+... .| ++ ...++.++++++
T Consensus 546 ~-~~~~~l~~i~~~~g~~~---------------------------~~------------~~--~~i~~~~~~~l~~~l~ 583 (852)
T 4fdd_A 546 F-PLLECLSSVATALQSGF---------------------------LP------------YC--EPVYQRCVNLVQKTLA 583 (852)
T ss_dssp H-HHHHHHHHHHHHHGGGG---------------------------HH------------HH--HHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHhHhH---------------------------HH------------HH--HHHHHHHHHHHHHHHH
Confidence 3 56677776665332100 00 00 012233333332
Q ss_pred -------------CCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc-
Q 008257 454 -------------HTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT- 519 (572)
Q Consensus 454 -------------~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~- 519 (572)
.++.+++..++.+++.++..-. ......+.+.+.++.+++++ .+++..+++.+.+++..++..
T Consensus 584 ~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~--~~~~~~~~~~~~~~~l~~~l-~~~~~~vr~~a~~~l~~l~~~~ 660 (852)
T 4fdd_A 584 QAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLG--GNIEQLVARSNILTLMYQCM-QDKMPEVRQSSFALLGDLTKAC 660 (852)
T ss_dssp HHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHG--GGGHHHHHTCCHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHh--HhHHHHhcCCcHHHHHHHHh-CCCChhHHHHHHHHHHHHHHHh
Confidence 2356788889999999885311 11123344567778888888 588899999999999998843
Q ss_pred hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257 520 DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDK 560 (572)
Q Consensus 520 ~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~ 560 (572)
.+.-..+.. .+.+.|++.+..+++.++..|+|++..++.
T Consensus 661 ~~~~~~~l~--~~lp~l~~~l~~~~~~v~~~a~~alg~i~~ 699 (852)
T 4fdd_A 661 FQHVKPCIA--DFMPILGTNLNPEFISVCNNATWAIGEISI 699 (852)
T ss_dssp GGGTGGGHH--HHHHHHHHTCCTTSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH--HHHHHHHHHcCccchHHHHHHHHHHHHHHH
Confidence 221122211 133477888878888999999999998865
No 46
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.64 E-value=7.6e-14 Score=152.55 Aligned_cols=431 Identities=11% Similarity=0.109 Sum_probs=288.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhH-HH
Q 008257 3 SSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVG-SC 80 (572)
Q Consensus 3 ~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~-~~ 80 (572)
-++++|+.++..|..+|.++. .++.... .++++.+.|.+.++.+|..|+.+|.++.. +++ .+...+. +.
T Consensus 94 dL~~~n~~ir~~AL~~L~~i~-~~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~ 164 (591)
T 2vgl_B 94 DCEDPNPLIRALAVRTMGCIR-VDKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDS 164 (591)
T ss_dssp GSSSSSHHHHHHHHHHHHTCC-SGGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHcCC-hHHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHH
Confidence 367899999999988888886 3333333 35788999999999999999999999876 333 2223455 99
Q ss_pred HHHhcccCCHHHHHHHHHHHHHhhcCCCcH-HHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCcc
Q 008257 81 LINIMKSGNMQAREAALKALNQISSCEPSA-KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSI 159 (572)
Q Consensus 81 Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~-~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~ 159 (572)
|.++|++.++.++..|+.+|..++.+.+.. ..-...+.++.|+..|... ++-.+.....+|.+++..+.
T Consensus 165 l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~-----~~~~q~~il~~l~~l~~~~~----- 234 (591)
T 2vgl_B 165 LRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC-----TEWGQIFILDCLSNYNPKDD----- 234 (591)
T ss_dssp HHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHTSCCCSH-----
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC-----CchHHHHHHHHHHHhCCCCh-----
Confidence 999999999999999999999999765422 1111334567777777643 25566666666665542110
Q ss_pred ccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCC-CccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHH
Q 008257 160 TVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSP-TTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASI 238 (572)
Q Consensus 160 ~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~-~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~ 238 (572)
-.....++.+..++++.++.+...|++++..+...- .+.+..+ .+ -....++|+.++. +++++|-.|+
T Consensus 235 --------~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~-~~-~~~~~~~L~~L~~-~d~~vr~~aL 303 (591)
T 2vgl_B 235 --------REAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYN-ML-LKKLAPPLVTLLS-GEPEVQYVAL 303 (591)
T ss_dssp --------HHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHH-HH-HHHTHHHHHHHTT-SCHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHH-HH-HHHHHHHHHHHhc-CCccHHHHHH
Confidence 012467888888889999999999999999987521 1101122 22 1345678887764 7889999999
Q ss_pred HHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhc
Q 008257 239 ELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQ 318 (572)
Q Consensus 239 ~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~ 318 (572)
.+|..+....+.. +. ..+..+..++ + ++ ..++..|+.+|.+++..+ +. +. .++.|...+.+
T Consensus 304 ~~l~~i~~~~p~~----~~---~~~~~~~~~~-~-d~-~~Ir~~al~~L~~l~~~~-nv-~~-----iv~~L~~~l~~-- 364 (591)
T 2vgl_B 304 RNINLIVQKRPEI----LK---QEIKVFFVKY-N-DP-IYVKLEKLDIMIRLASQA-NI-AQ-----VLAELKEYATE-- 364 (591)
T ss_dssp HHHHHHHHHCCST----TT---TCTTTTSCCT-T-SC-HHHHHHHHHHHHHTCCSS-TH-HH-----HHHHHHHHTTS--
T ss_pred HHHHHHHHhChHH----HH---HHHHhheecc-C-Ch-HHHHHHHHHHHHHHCChh-hH-HH-----HHHHHHHHHhc--
Confidence 9999887543322 11 1223332222 2 22 389999999999988633 22 22 24455555543
Q ss_pred cCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCC
Q 008257 319 LGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKL 398 (572)
Q Consensus 319 ~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~ 398 (572)
.+..++..+++++.+++.. .+... ...++.|+++|+.. .+.+...+..++.++....+..
T Consensus 365 --------~d~~~r~~~v~aI~~la~~---~~~~~-----~~~v~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~~p~~--- 424 (591)
T 2vgl_B 365 --------VDVDFVRKAVRAIGRCAIK---VEQSA-----ERCVSTLLDLIQTK-VNYVVQEAIVVIRDIFRKYPNK--- 424 (591)
T ss_dssp --------SCHHHHHHHHHHHHHHHTT---CHHHH-----HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHSCSS---
T ss_pred --------CCHHHHHHHHHHHHHHHHh---ChhHH-----HHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHCcch---
Confidence 2456788899999999964 44322 23579999999998 7788888888888887543221
Q ss_pred CCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcC-CCHhHHHHHHHHHHHhhhcCccc
Q 008257 399 PELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDH-TNEKVVEASLAALSTVIDDGVDI 477 (572)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~~l~~~~~~~ 477 (572)
...+++.|++.|++ .++.+...++++|+.....-.
T Consensus 425 ------------------------------------------~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~-- 460 (591)
T 2vgl_B 425 ------------------------------------------YESIIATLCENLDSLDEPDARAAMIWIVGEYAERID-- 460 (591)
T ss_dssp ------------------------------------------CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCT--
T ss_pred ------------------------------------------HHHHHHHHHHHHHhccCHHHHHHHHHHHHccccccc--
Confidence 23478889999974 678899999999998864321
Q ss_pred hhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc-hhhhhhhcCCCCchHHHHHHh-h-cCCchhHHHHHHH
Q 008257 478 EQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT-DDIAYEVSGDPNVSTALVDAF-Q-HADYRTRQIAERA 554 (572)
Q Consensus 478 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~Lv~ll-~-~~~~~~~~~Aa~a 554 (572)
+ .. ..++.+++-+ ...++.+|..++.++.+++.. ++... .....+++.. . +.|+++|++|...
T Consensus 461 -~-~~-----~~l~~l~~~~-~~~~~~vr~~~l~a~~Kl~~~~p~~~~------~~i~~ll~~~~~d~~d~evrdRA~~y 526 (591)
T 2vgl_B 461 -N-AD-----ELLESFLEGF-HDESTQVQLTLLTAIVKLFLKKPSETQ------ELVQQVLSLATQDSDNPDLRDRGYIY 526 (591)
T ss_dssp -T-HH-----HHHHHHSTTC-SSSCHHHHHHHHHHHHHHHTTCCSTTH------HHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred -C-HH-----HHHHHHHHhh-ccCCHHHHHHHHHHHHHHHhcCchHHH------HHHHHHHHHhhhcCCChHHHHHHHHH
Confidence 1 11 1122233333 145678999999999999854 22110 1112345544 3 4678999999999
Q ss_pred HHhhcc
Q 008257 555 LKHIDK 560 (572)
Q Consensus 555 L~~L~~ 560 (572)
+.-|..
T Consensus 527 ~~ll~~ 532 (591)
T 2vgl_B 527 WRLLST 532 (591)
T ss_dssp HTTTTT
T ss_pred HHHHCc
Confidence 888865
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.59 E-value=2.6e-13 Score=133.76 Aligned_cols=260 Identities=11% Similarity=0.097 Sum_probs=198.8
Q ss_pred HHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCC
Q 008257 30 RQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEP 108 (572)
Q Consensus 30 ~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~ 108 (572)
....+.+.++.|++.|.+++..+|..|+.+|+++.. ... +.|+++|+++++.++..|+++|..+...+.
T Consensus 17 ~~~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~ 86 (280)
T 1oyz_A 17 YNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK 86 (280)
T ss_dssp HHHHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred HHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence 345567889999999999999999999999998762 234 999999999999999999999999875433
Q ss_pred cHHHHHHcCChHHHHH-HHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChh
Q 008257 109 SAKVLIHAGILPPLVK-DLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPT 187 (572)
Q Consensus 109 ~~~~iv~~G~i~~Lv~-lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~ 187 (572)
.... .++.|.+ ++.. .++.++..|+++|+++..... .....+++.|+.++.++++.
T Consensus 87 ~~~~-----l~~~L~~~~~~d-----~~~~vr~~a~~aL~~l~~~~~-------------~~~~~~~~~L~~~l~d~~~~ 143 (280)
T 1oyz_A 87 CEDN-----VFNILNNMALND-----KSACVRATAIESTAQRCKKNP-------------IYSPKIVEQSQITAFDKSTN 143 (280)
T ss_dssp THHH-----HHHHHHHHHHHC-----SCHHHHHHHHHHHHHHHHHCG-------------GGHHHHHHHHHHHTTCSCHH
T ss_pred cchH-----HHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhccCC-------------cccHHHHHHHHHHhhCCCHH
Confidence 2111 2233332 2332 347899999999999975321 12356899999999999999
Q ss_pred HHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHH
Q 008257 188 IECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLI 267 (572)
Q Consensus 188 ~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv 267 (572)
++..++++|..+.. ..+++.|+.++.++++.+|..|+++|..+... .. .+++.|+
T Consensus 144 vR~~a~~aL~~~~~--------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~----------~~~~~L~ 198 (280)
T 1oyz_A 144 VRRATAFAISVIND--------------KATIPLLINLLKDPNGDVRNWAAFAININKYD-NS----------DIRDCFV 198 (280)
T ss_dssp HHHHHHHHHHTC-----------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-CH----------HHHHHHH
T ss_pred HHHHHHHHHHhcCC--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC-cH----------HHHHHHH
Confidence 99999999987642 24899999999999999999999999988533 11 3567888
Q ss_pred hhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCC
Q 008257 268 RVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLS 347 (572)
Q Consensus 268 ~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~ 347 (572)
.+|.+++. .++..|+.+|+++. ...+++.|+..|.+. .+...++.+|.++.
T Consensus 199 ~~l~d~~~--~vR~~A~~aL~~~~-----------~~~~~~~L~~~l~d~------------~vr~~a~~aL~~i~---- 249 (280)
T 1oyz_A 199 EMLQDKNE--EVRIEAIIGLSYRK-----------DKRVLSVLCDELKKN------------TVYDDIIEAAGELG---- 249 (280)
T ss_dssp HHTTCSCH--HHHHHHHHHHHHTT-----------CGGGHHHHHHHHTSS------------SCCHHHHHHHHHHC----
T ss_pred HHhcCCCH--HHHHHHHHHHHHhC-----------CHhhHHHHHHHhcCc------------cHHHHHHHHHHhcC----
Confidence 99988775 89999999999875 235788999999752 13457888888875
Q ss_pred CChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHH
Q 008257 348 DEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALE 386 (572)
Q Consensus 348 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~ 386 (572)
++ .++|.|.+++....++++...+..+|.
T Consensus 250 -~~---------~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 250 -DK---------TLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp -CG---------GGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred -ch---------hhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 33 568999999987546777777777664
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.55 E-value=4.1e-13 Score=132.30 Aligned_cols=260 Identities=12% Similarity=0.029 Sum_probs=197.5
Q ss_pred HHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHH
Q 008257 113 LIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKL 192 (572)
Q Consensus 113 iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a 192 (572)
+.+.+.++.|++.|.++ ++.+|..|+++|+++.. .+.++.|+.+|.++++.++..+
T Consensus 19 ~~~~~~i~~L~~~L~~~-----~~~vr~~A~~~L~~~~~-------------------~~~~~~L~~~l~d~~~~vR~~A 74 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDH-----NSLKRISSARVLQLRGG-------------------QDAVRLAIEFCSDKNYIRRDIG 74 (280)
T ss_dssp HHHTSCHHHHHHHTTCS-----SHHHHHHHHHHHHHHCC-------------------HHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHhhHHHHHHHHHcC-----CHHHHHHHHHHHHccCC-------------------chHHHHHHHHHcCCCHHHHHHH
Confidence 34678999999999754 37899999999998842 4579999999999999999999
Q ss_pred HHHHHHccCCCCccHHHHHHHHhcCChHHHH-HHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhc
Q 008257 193 LQVLVGLTSSPTTVLSVVSAIKSSGATISLV-QFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVIS 271 (572)
Q Consensus 193 ~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~ 271 (572)
+++|..+...... .. ..++.|. .++.++++.+|..++++|..+....+.. .. ..++.|+.+|.
T Consensus 75 ~~aL~~l~~~~~~---~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~--~~~~~L~~~l~ 138 (280)
T 1oyz_A 75 AFILGQIKICKKC---ED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SP--KIVEQSQITAF 138 (280)
T ss_dssp HHHHHHSCCCTTT---HH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HH--HHHHHHHHHTT
T ss_pred HHHHHHhcccccc---ch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cH--HHHHHHHHHhh
Confidence 9999998754321 11 1234444 2456788999999999999886432211 11 35788999998
Q ss_pred cCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChH
Q 008257 272 ENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPD 351 (572)
Q Consensus 272 ~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~ 351 (572)
+++. .++..|+.+|+++.. .++++.|+.++.+ .+..++..++++|.++.. .++
T Consensus 139 d~~~--~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d----------~~~~vr~~a~~aL~~~~~---~~~- 191 (280)
T 1oyz_A 139 DKST--NVRRATAFAISVIND-----------KATIPLLINLLKD----------PNGDVRNWAAFAININKY---DNS- 191 (280)
T ss_dssp CSCH--HHHHHHHHHHHTC--------------CCHHHHHHHHTC----------SSHHHHHHHHHHHHHHTC---CCH-
T ss_pred CCCH--HHHHHHHHHHHhcCC-----------HHHHHHHHHHHcC----------CCHHHHHHHHHHHHhhcc---CcH-
Confidence 8875 899999999998753 2589999999976 245678899999988852 133
Q ss_pred HHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCcc
Q 008257 352 AIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLC 431 (572)
Q Consensus 352 ~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 431 (572)
.++|.|+++|+++ ++.+|..|+++|+.+.
T Consensus 192 --------~~~~~L~~~l~d~-~~~vR~~A~~aL~~~~------------------------------------------ 220 (280)
T 1oyz_A 192 --------DIRDCFVEMLQDK-NEEVRIEAIIGLSYRK------------------------------------------ 220 (280)
T ss_dssp --------HHHHHHHHHTTCS-CHHHHHHHHHHHHHTT------------------------------------------
T ss_pred --------HHHHHHHHHhcCC-CHHHHHHHHHHHHHhC------------------------------------------
Confidence 3468899999998 8999999999998763
Q ss_pred CccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHH
Q 008257 432 SLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVW 511 (572)
Q Consensus 432 ~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~ 511 (572)
+..+++.|+++|.+++ ++..|+.+|+.+.. ...++.|.+++..+.++.+...+..
T Consensus 221 ---------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~--------------~~~~~~L~~~l~~~~~~~~~~~~~~ 275 (280)
T 1oyz_A 221 ---------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD--------------KTLLPVLDTMLYKFDDNEIITSAID 275 (280)
T ss_dssp ---------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC--------------GGGHHHHHHHHTTSSCCHHHHHHHH
T ss_pred ---------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc--------------hhhhHHHHHHHhcCCCcHHHHHHHH
Confidence 2248899999998754 88899999998752 1357889999976677777777777
Q ss_pred HHHH
Q 008257 512 VVER 515 (572)
Q Consensus 512 ~l~~ 515 (572)
.+.+
T Consensus 276 ~l~~ 279 (280)
T 1oyz_A 276 KLKR 279 (280)
T ss_dssp HHTC
T ss_pred Hhhc
Confidence 6643
No 49
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.52 E-value=1.6e-12 Score=142.69 Aligned_cols=440 Identities=13% Similarity=0.081 Sum_probs=292.2
Q ss_pred CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhHHHHH
Q 008257 4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVGSCLI 82 (572)
Q Consensus 4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~~~Lv 82 (572)
+++.++.++..|.++|.++.. + .+.+ ..++++.++|.+.++.+|..|+.++.++.. +++. .+...+.+.
T Consensus 116 L~~~n~~vr~lAL~~L~~i~~-~----~~~~-~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~----v~~~~~~l~ 185 (618)
T 1w63_A 116 LNHSTQFVQGLALCTLGCMGS-S----EMCR-DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL----MEMFLPATK 185 (618)
T ss_dssp HSCSSSHHHHHHHHHHHHHCC-H----HHHH-HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG----GGGGGGGTT
T ss_pred cCCCCHhHHHHHHHHHHhcCC-H----HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH----HHHHHHHHH
Confidence 356777888888888888873 2 2322 357888899999999999999999999876 3332 122238889
Q ss_pred HhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccC----C------CCCCcchHHHHHHHHHHHHhc
Q 008257 83 NIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVG----S------NHLPMRLKEVSATILANVVNS 152 (572)
Q Consensus 83 ~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~----~------~~~~~~~~~~aa~~L~nla~~ 152 (572)
++|...++.++..|+.+|..++..++..... -...+|.|+++|..-. + ...++-.|.....+|..++..
T Consensus 186 ~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~-~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~ 264 (618)
T 1w63_A 186 NLLNEKNHGVLHTSVVLLTEMCERSPDMLAH-FRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN 264 (618)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHCCSHHHHHHH-HHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT
T ss_pred HHhCCCCHhHHHHHHHHHHHHHHhChHHHHH-HHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC
Confidence 9999999999999999999998653321111 2367899999886410 0 001367788888889888754
Q ss_pred CCCCCccccCCCccccchhhhHHHHHHHHhc------CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHh
Q 008257 153 GHDFDSITVGPDNQTLVSEDIVHNLLHLISN------TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFV 226 (572)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~------~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL 226 (572)
++. ..+..++.|..++.. .+..+...+++++..+...+ ..+ ..++..|..++
T Consensus 265 ~~~-------------~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~----~l~-----~~a~~~L~~~L 322 (618)
T 1w63_A 265 DDD-------------SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSES----GLR-----VLAINILGRFL 322 (618)
T ss_dssp CHH-------------HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCH----HHH-----HHHHHHHHHHH
T ss_pred CHH-------------HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCH----HHH-----HHHHHHHHHHH
Confidence 211 112345555555532 34567889999999886532 222 14678999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCC
Q 008257 227 EAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGA 306 (572)
Q Consensus 227 ~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~ 306 (572)
.++++++|..|+.+|..+....+ ..+. .....++.++.+++. .++..|+.+|..++..+ +. +.+
T Consensus 323 ~~~d~~vr~~aL~~L~~i~~~~p----~~~~---~~~~~i~~~l~d~d~--~Ir~~alelL~~l~~~~-nv-~~i----- 386 (618)
T 1w63_A 323 LNNDKNIRYVALTSLLKTVQTDH----NAVQ---RHRSTIVDCLKDLDV--SIKRRAMELSFALVNGN-NI-RGM----- 386 (618)
T ss_dssp TCSSTTTHHHHHHHHHHHHHHHH----HHHG---GGHHHHHHGGGSSCH--HHHHHHHHHHHHHCCSS-ST-HHH-----
T ss_pred hCCCCchHHHHHHHHHHHHhhCH----HHHH---HHHHHHHHHccCCCh--hHHHHHHHHHHHHcccc-cH-HHH-----
Confidence 99999999999999998875422 1233 356788888988775 89999999999988732 23 222
Q ss_pred hHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHH
Q 008257 307 FGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALE 386 (572)
Q Consensus 307 l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~ 386 (572)
++.|...+.+ .+.+++..++.++.+++... .+.... .++.|+++|+.. ...++..+...+.
T Consensus 387 v~eL~~~l~~----------~d~e~r~~~v~~I~~la~k~--~~~~~~------~v~~ll~lL~~~-~~~v~~~~~~~l~ 447 (618)
T 1w63_A 387 MKELLYFLDS----------CEPEFKADCASGIFLAAEKY--APSKRW------HIDTIMRVLTTA-GSYVRDDAVPNLI 447 (618)
T ss_dssp HHHHHHHHHH----------CCHHHHHHHHHHHHHHHHSS--CCCHHH------HHHHHHHHHHHT-GGGSCSSHHHHHH
T ss_pred HHHHHHHHHh----------CCHHHHHHHHHHHHHHHHHh--CccHHH------HHHHHHHHHHhc-cchhHHHHHHHHH
Confidence 3666677665 24577888999999998642 122222 368899999987 6667777777777
Q ss_pred HhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcC--CCHhHHHHHH
Q 008257 387 NLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDH--TNEKVVEASL 464 (572)
Q Consensus 387 ~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~--~~~~v~~~A~ 464 (572)
.+....+.. ...+++.|+++|.+ ..+.+...++
T Consensus 448 ~ii~~~p~l---------------------------------------------~~~~v~~L~~~l~~~~~~~~~~~~~~ 482 (618)
T 1w63_A 448 QLITNSVEM---------------------------------------------HAYTVQRLYKAILGDYSQQPLVQVAA 482 (618)
T ss_dssp HHHHHSCST---------------------------------------------HHHHHHHHHHHHHHCCSCSHHHHHHH
T ss_pred HHHhcChhH---------------------------------------------HHHHHHHHHHHHhcccccHHHHHHHH
Confidence 776533211 22367788888875 3455566789
Q ss_pred HHHHHhhhcCcc--chh-hHHHHHhcCChHHHHHHHhh-cCCHHHHHHHHHHHHHHHcc-hhhhhhhcCCCCchHHHHHH
Q 008257 465 AALSTVIDDGVD--IEQ-GVMVLCEAQGIKPILDVLLE-KRTENLQRRAVWVVERILRT-DDIAYEVSGDPNVSTALVDA 539 (572)
Q Consensus 465 ~aL~~l~~~~~~--~~~-~~~~i~~~g~i~~L~~lL~~-~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~Lv~l 539 (572)
+.|+.....-.+ .+. ....+.....++.|..++.. ..++.+|..+++++.+++.. ++.... +...|-..
T Consensus 483 wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~~~~------l~~~L~~~ 556 (618)
T 1w63_A 483 WCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNR------IKKVVSIY 556 (618)
T ss_dssp HHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSCHHH------HHHHHHHH
T ss_pred HHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcchHHH------HHHHHHHh
Confidence 999988642100 000 00000011234556566632 45788999999999999854 322211 22234444
Q ss_pred hhcCCchhHHHHHHHHHhhcccC
Q 008257 540 FQHADYRTRQIAERALKHIDKIP 562 (572)
Q Consensus 540 l~~~~~~~~~~Aa~aL~~L~~~~ 562 (572)
..+.|.++|++|...+..|...+
T Consensus 557 ~~~~d~evrdRA~~y~~ll~~~~ 579 (618)
T 1w63_A 557 GSSIDVELQQRAVEYNALFKKYD 579 (618)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHHcCcH
Confidence 56788899999999988887643
No 50
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.50 E-value=7e-12 Score=143.32 Aligned_cols=479 Identities=14% Similarity=0.126 Sum_probs=278.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCcc----------------------hHHHHHHcCCcHHHHHHHcc-------CCHHHHHH
Q 008257 5 KSENLLTVEKAEKTLANLEKCEN----------------------NVRQMAENGRLQPLLTQILE-------GPQETKLS 55 (572)
Q Consensus 5 ~s~~~~~~~~A~~~L~~L~~~~~----------------------n~~~i~~~g~i~~Lv~~L~~-------~~~~~~~~ 55 (572)
+++++.+...|...+..++.... ..+... ...++.++..|.. .+..+|..
T Consensus 269 ~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~ 347 (876)
T 1qgr_A 269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKA 347 (876)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHH
Confidence 45677888888888888765321 000000 2235666676652 34567888
Q ss_pred HHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCC-c-HHHHHHcCChHHHHHHHhccCCC
Q 008257 56 LAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEP-S-AKVLIHAGILPPLVKDLFTVGSN 132 (572)
Q Consensus 56 aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~-~-~~~iv~~G~i~~Lv~lL~s~~~~ 132 (572)
++.+|..++..-.. .+.. .+ +.+...|.+.+..+|+.|+.+|..++.... . ... .-...+|.|+..|...
T Consensus 348 a~~~l~~l~~~~~~--~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~--- 420 (876)
T 1qgr_A 348 AGVCLMLLATCCED--DIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDP--- 420 (876)
T ss_dssp HHHHHHHHHHHHGG--GGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCS---
T ss_pred HHHHHHHHHHHCcH--hhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCC---
Confidence 88888887752211 1222 34 888888999999999999999999997543 2 112 2245789999999753
Q ss_pred CCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCC--------
Q 008257 133 HLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPT-------- 204 (572)
Q Consensus 133 ~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~-------- 204 (572)
.+.+|..|+++|++++....... + ..-.-..+++.|+..+.+. +.++..++++|..++....
T Consensus 421 --~~~vr~~a~~~l~~~~~~~~~~~----~---~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~ 490 (876)
T 1qgr_A 421 --SVVVRDTAAWTVGRICELLPEAA----I---NDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADD 490 (876)
T ss_dssp --SHHHHHHHHHHHHHHHHHCGGGT----S---STTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred --CHHHHHHHHHHHHHHHHhCchhc----c---cHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccc
Confidence 37899999999999987532100 0 0012356788888888774 8899999999988764310
Q ss_pred ----ccHHHHHHHHhcCChHHHHHHhcCC---C-----------------------------------------------
Q 008257 205 ----TVLSVVSAIKSSGATISLVQFVEAP---Q----------------------------------------------- 230 (572)
Q Consensus 205 ----~~~~~~~~i~~~g~i~~Lv~lL~~~---~----------------------------------------------- 230 (572)
..+.....+ ...++.|+.++... +
T Consensus 491 ~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 568 (876)
T 1qgr_A 491 QEEPATYCLSSSF--ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHI 568 (876)
T ss_dssp CCCCCCCSSTTTH--HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSC
T ss_pred cccccchhhhHhH--HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 000000000 11233444444322 1
Q ss_pred ---------HHHHHHHHHHHHHcCCCCC-hhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcH-HHHH
Q 008257 231 ---------NDLRLASIELIQNLSPHMG-HELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDL-GLTR 299 (572)
Q Consensus 231 ---------~~v~~~a~~~L~~Ls~~~~-~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~-~~~~ 299 (572)
++++..++.+|..++...+ ..+...+ . ..++.|+.++.+......++..++.+++.++.... ....
T Consensus 569 ~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~--~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 645 (876)
T 1qgr_A 569 QSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS-D--VVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLK 645 (876)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH-H--HHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH-H--HHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHH
Confidence 2234445555555554433 2221111 1 35677888887664112577788888877764211 1111
Q ss_pred HHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccC-CcHHHH
Q 008257 300 QMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN-GLDKVQ 378 (572)
Q Consensus 300 ~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~vk 378 (572)
.++ ..+|.++..|.+. ....++..+++++..++... .+.....+ ..+++.|++.|.++ .+..+|
T Consensus 646 -~~~-~~~~~l~~~l~~~---------~~~~vr~~a~~~l~~l~~~~--~~~~~~~~--~~i~~~l~~~l~~~~~~~~~~ 710 (876)
T 1qgr_A 646 -YME-AFKPFLGIGLKNY---------AEYQVCLAAVGLVGDLCRAL--QSNIIPFC--DEVMQLLLENLGNENVHRSVK 710 (876)
T ss_dssp -GHH-HHHHHHHHHHHHC---------TTHHHHHHHHHHHHHHHHHH--GGGGHHHH--HHHHHHHHHHHTCTTSCGGGH
T ss_pred -HHH-HHHHHHHHHHcCc---------chHHHHHHHHHHHHHHHHHH--HHhhhhhH--HHHHHHHHHHhCCccccHHhh
Confidence 111 2567777777652 13556777888888776421 12222221 35778899999873 256799
Q ss_pred HHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCC--
Q 008257 379 MVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTN-- 456 (572)
Q Consensus 379 ~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~-- 456 (572)
..+++++++++...+..-. . ++ ...+++|.+.+....
T Consensus 711 ~~~~~~l~~i~~~~g~~~~--------------------------------------~-~l--~~~~~~l~~~~~~~~~~ 749 (876)
T 1qgr_A 711 PQILSVFGDIALAIGGEFK--------------------------------------K-YL--EVVLNTLQQASQAQVDK 749 (876)
T ss_dssp HHHHHHHHHHHHHHGGGGG--------------------------------------G-GH--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHHhchhHH--------------------------------------H-HH--HHHHHHHHHHHhccCCC
Confidence 9999999998764321100 0 01 235667777775432
Q ss_pred --H-------hHHHHHHHHHHHhhhcCccc----hhhHHHHHhcCChHHHHHHHh---hcC--CHHHHHHHHHHHHHHHc
Q 008257 457 --E-------KVVEASLAALSTVIDDGVDI----EQGVMVLCEAQGIKPILDVLL---EKR--TENLQRRAVWVVERILR 518 (572)
Q Consensus 457 --~-------~v~~~A~~aL~~l~~~~~~~----~~~~~~i~~~g~i~~L~~lL~---~~~--~~~~~~~a~~~l~~l~~ 518 (572)
+ .++..++.++..++..-... ......+.. -++.++.++. .++ ++.++..|+.+|..++.
T Consensus 750 ~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 827 (876)
T 1qgr_A 750 SDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQP--RVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCT 827 (876)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGG--GHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 2 67777888887766421000 000000100 1233333331 345 68899999999999986
Q ss_pred ch-h-hhhhhcCCCCchHHHHH-HhhcCCchhHHHHHHHHHhhcccCCCC
Q 008257 519 TD-D-IAYEVSGDPNVSTALVD-AFQHADYRTRQIAERALKHIDKIPNFS 565 (572)
Q Consensus 519 ~~-~-~~~~~~~~~~~~~~Lv~-ll~~~~~~~~~~Aa~aL~~L~~~~~~s 565 (572)
.- . .-..+... .+..+|++ .+.++++.+|+.|++|+.++.++..+|
T Consensus 828 ~~~~~~~~~~~~~-~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~~~~ 876 (876)
T 1qgr_A 828 AFGKDVLKLVEAR-PMIHELLTEGRRSKTNKAKTLARWATKELRKLKNQA 876 (876)
T ss_dssp HHCTHHHHHHHTS-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HhCcHHHHHHHhc-HHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHhhcCC
Confidence 52 2 12223222 33457887 888999999999999999999876543
No 51
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.45 E-value=2.7e-11 Score=138.22 Aligned_cols=471 Identities=11% Similarity=0.093 Sum_probs=287.4
Q ss_pred CCCCCHHHHHHHHHHHHhhccCcch------------------HHHHHHcCCcHHHHHHHccC-------CHHHHHHHHH
Q 008257 4 SKSENLLTVEKAEKTLANLEKCENN------------------VRQMAENGRLQPLLTQILEG-------PQETKLSLAA 58 (572)
Q Consensus 4 ~~s~~~~~~~~A~~~L~~L~~~~~n------------------~~~i~~~g~i~~Lv~~L~~~-------~~~~~~~aa~ 58 (572)
+++.|+.++..|...+..++..... ..... ...++.++..|... ...++..++.
T Consensus 275 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~ 353 (861)
T 2bpt_A 275 MKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGA 353 (861)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHH
Confidence 3567888899999998888753211 11111 23566777777642 3467888889
Q ss_pred HHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCC-c-HHHHHHcCChHHHHHHHhccCCCCCC
Q 008257 59 FLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEP-S-AKVLIHAGILPPLVKDLFTVGSNHLP 135 (572)
Q Consensus 59 ~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~-~-~~~iv~~G~i~~Lv~lL~s~~~~~~~ 135 (572)
+|..++..-. ..+.. .+ +.+.+.|.+.+...++.|+.++..++.... . ....+ ...+|.|++.+... .
T Consensus 354 ~L~~l~~~~~--~~~~~-~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~-----~ 424 (861)
T 2bpt_A 354 CLQLFAQNCG--NHILE-PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQ-----S 424 (861)
T ss_dssp HHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCS-----C
T ss_pred HHHHHHHHcc--HhHHH-HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCC-----c
Confidence 9988876221 11111 24 778888888899999999999999996532 1 11112 24677788877643 3
Q ss_pred cchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCc--cHHHHHHH
Q 008257 136 MRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTT--VLSVVSAI 213 (572)
Q Consensus 136 ~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~--~~~~~~~i 213 (572)
+.+|..++++|+.++..-... +. ..-.-..+++.++..+.+. +.++..++++|..++..... ...+...+
T Consensus 425 ~~vr~~a~~~l~~l~~~~~~~----~~---~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~ 496 (861)
T 2bpt_A 425 LQVKETTAWCIGRIADSVAES----ID---PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY 496 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG----SC---TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH
T ss_pred HHHHHHHHHHHHHHHHHhhhh----cC---CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 789999999999998642110 00 0012356788899888775 89999999999888653110 00111111
Q ss_pred HhcCChHHHHHHhcCCC--HHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccC-------------CCChH
Q 008257 214 KSSGATISLVQFVEAPQ--NDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISEN-------------VGISK 278 (572)
Q Consensus 214 ~~~g~i~~Lv~lL~~~~--~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~-------------~~~~~ 278 (572)
...++.|+.++...+ +.+|..++.++..+....+.+....+. ..++.++..|... +....
T Consensus 497 --~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~---~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~ 571 (861)
T 2bpt_A 497 --PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA---SISTFVMDKLGQTMSVDENQLTLEDAQSLQE 571 (861)
T ss_dssp --HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH---HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHH
T ss_pred --HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH---HHHHHHHHHHHHHHhhhcccCChhhHHHHHH
Confidence 234778888887544 689999999999998655544433333 2566677666532 11124
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchh-hHHHHHHHHHHHHhccCCCChHHHHHHH
Q 008257 279 EQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVT-PFLEGLLSVLARVTFVLSDEPDAIALCC 357 (572)
Q Consensus 279 ~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~-~~~e~a~~aL~~l~~~~~~~~~~~~~i~ 357 (572)
++..+..+|.++...-........ ...++.++..+++. .. .+++.++.++..++.. ...+....+-
T Consensus 572 ~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~----------~~~~v~~~~~~~l~~l~~~--~~~~~~~~l~ 638 (861)
T 2bpt_A 572 LQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK----------DSAFIEDDVFYAISALAAS--LGKGFEKYLE 638 (861)
T ss_dssp HHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST----------TGGGTHHHHHHHHHHHHHH--HGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC----------CCCcHHHHHHHHHHHHHHH--HhhhHHHHHH
Confidence 566777777766532111101111 13456666666542 12 4577777777777643 1222332222
Q ss_pred HcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchh
Q 008257 358 EHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETF 437 (572)
Q Consensus 358 ~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 437 (572)
.++|.|.+.|+++ ++.++..+..++..++...+.. +
T Consensus 639 --~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~-----------------------------------------~ 674 (861)
T 2bpt_A 639 --TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEED-----------------------------------------F 674 (861)
T ss_dssp --HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGG-----------------------------------------G
T ss_pred --HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchh-----------------------------------------c
Confidence 3789999999876 7889999999998887543210 0
Q ss_pred hhhhccchHHHHHhhcCCC--HhHHHHHHHHHHHhhhcC-ccchhhHHHHHhcCChHHHHHHHhhcC----C-------H
Q 008257 438 CLLEGHAVEKLIALLDHTN--EKVVEASLAALSTVIDDG-VDIEQGVMVLCEAQGIKPILDVLLEKR----T-------E 503 (572)
Q Consensus 438 ~l~~~g~i~~Lv~lL~~~~--~~v~~~A~~aL~~l~~~~-~~~~~~~~~i~~~g~i~~L~~lL~~~~----~-------~ 503 (572)
.-.-...++.+++.|.+.+ ..++..++.+++.++..- ..+..... .-++.+++.+. .. + .
T Consensus 675 ~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~-----~~l~~l~~~~~-~~~~~~d~d~~~~~~ 748 (861)
T 2bpt_A 675 RRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN-----DIMALCVAAQN-TKPENGTLEALDYQI 748 (861)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH-----HHHHHHHHHHT-CCCSSSSHHHHHHHH
T ss_pred cchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHHh-cCCCCCChHHHHHHH
Confidence 0001346788888888764 889999999999998642 21221111 23567777773 32 1 3
Q ss_pred HHHHHHHHHHHHHHcc-hhhhhhhcCC-CCchHHHHHHhhcC----CchhHHHHHHHHHhhcc
Q 008257 504 NLQRRAVWVVERILRT-DDIAYEVSGD-PNVSTALVDAFQHA----DYRTRQIAERALKHIDK 560 (572)
Q Consensus 504 ~~~~~a~~~l~~l~~~-~~~~~~~~~~-~~~~~~Lv~ll~~~----~~~~~~~Aa~aL~~L~~ 560 (572)
.+++.+..++..++.. .+....+..- ..+...|...+.+. +..+|+.|..+|..|..
T Consensus 749 ~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~ 811 (861)
T 2bpt_A 749 KVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA 811 (861)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence 4677777777777733 1101112110 01222444555553 78999999999999987
No 52
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.45 E-value=2.3e-11 Score=138.74 Aligned_cols=467 Identities=12% Similarity=0.078 Sum_probs=296.0
Q ss_pred CHHHHHHHHHHHHhhcc-CcchHH-HHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC-c-chhHHHHhhhH-HHHH
Q 008257 8 NLLTVEKAEKTLANLEK-CENNVR-QMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN-S-DVKVLVARTVG-SCLI 82 (572)
Q Consensus 8 ~~~~~~~A~~~L~~L~~-~~~n~~-~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~-~-~~k~~i~~~g~-~~Lv 82 (572)
++.++..|.++|..+.. -+.+.. .......++.|...+.+++.++|..+..+|..++.. . .....+.. .+ +.++
T Consensus 194 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~-~l~~~~~ 272 (861)
T 2bpt_A 194 SKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ-ALYALTI 272 (861)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHH-THHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 78889999999988643 111110 011112456666777888899999999999988752 2 22222221 34 7778
Q ss_pred HhcccCCHHHHHHHHHHHHHhhcCCCc------------------HHHHHHcCChHHHHHHHhccCCC--CCCcchHHHH
Q 008257 83 NIMKSGNMQAREAALKALNQISSCEPS------------------AKVLIHAGILPPLVKDLFTVGSN--HLPMRLKEVS 142 (572)
Q Consensus 83 ~lL~s~~~~~~~~A~~aL~~Ls~~~~~------------------~~~iv~~G~i~~Lv~lL~s~~~~--~~~~~~~~~a 142 (572)
..+.+.+.+++..|+..+..++..... .... -...+|.|+..|.....+ +....++..|
T Consensus 273 ~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~il~~ll~~l~~~~~d~~d~~~~~r~~a 351 (861)
T 2bpt_A 273 ATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSS-IKDVVPNLLNLLTRQNEDPEDDDWNVSMSA 351 (861)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHH-HHHHHHHHHHHTTCCCCC-CCCCCHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHH-HHHHHHHHHHHHHhcccccccccCcHHHHH
Confidence 888888999999999999988764211 1111 145678888888653211 1224788999
Q ss_pred HHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHH
Q 008257 143 ATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISL 222 (572)
Q Consensus 143 a~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L 222 (572)
..+|..++..-.+ -....+++.+...+.+.++..+..++.+|..++..... +.....+ ...++.|
T Consensus 352 ~~~L~~l~~~~~~------------~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~-~~~~~~l--~~il~~l 416 (861)
T 2bpt_A 352 GACLQLFAQNCGN------------HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDK-VQRTYYV--HQALPSI 416 (861)
T ss_dssp HHHHHHHHHHHGG------------GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH-HHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHccH------------hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCH-HHHHHHH--HHHHHHH
Confidence 9999999864210 01234666677777788899999999999999976431 1222222 2468889
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCChhH--HHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCc-----H
Q 008257 223 VQFVEAPQNDLRLASIELIQNLSPHMGHEL--ADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERD-----L 295 (572)
Q Consensus 223 v~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~--~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~-----~ 295 (572)
+..+.++++.+|..++++|..++...+..+ ...+. ..++.|++.|.++ . .++..|.++|.+++..- .
T Consensus 417 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~---~~l~~l~~~l~~~-~--~v~~~a~~al~~l~~~~~~~~~~ 490 (861)
T 2bpt_A 417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLP---GVVQACLIGLQDH-P--KVATNCSWTIINLVEQLAEATPS 490 (861)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHH---HHHHHHHHHHTSC-H--HHHHHHHHHHHHHHHHHSSSSSC
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHH---HHHHHHHHHhccC-h--HHHHHHHHHHHHHHHhcccccch
Confidence 999999999999999999998874321110 00111 3577888888664 3 78888888888765311 1
Q ss_pred HHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccC---
Q 008257 296 GLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN--- 372 (572)
Q Consensus 296 ~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--- 372 (572)
.....+ ...++.|+.++.+.. ....++..++.++..+... ...+....+. .++|.+++.|...
T Consensus 491 ~l~~~~--~~il~~L~~~l~~~d--------~~~~vr~~a~~al~~l~~~--~~~~~~~~~~--~l~~~l~~~l~~~~~~ 556 (861)
T 2bpt_A 491 PIYNFY--PALVDGLIGAANRID--------NEFNARASAFSALTTMVEY--ATDTVAETSA--SISTFVMDKLGQTMSV 556 (861)
T ss_dssp GGGGGH--HHHHHHHHHHHTCSC--------CGGGHHHHHHHHHHHHHHH--CCGGGHHHHH--HHHHHHHHHHHHHTTS
T ss_pred hhHHHH--HHHHHHHHHHHhCcC--------cchHHHHHHHHHHHHHHHH--cchhhHHHHH--HHHHHHHHHHHHHHhh
Confidence 111111 123556666665311 1245677788888887754 2233333222 3677788777631
Q ss_pred -----------CcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhh
Q 008257 373 -----------GLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLE 441 (572)
Q Consensus 373 -----------~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~ 441 (572)
....++..+..+|.+++...+.... .+ -
T Consensus 557 ~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--------------------------------------~~---~ 595 (861)
T 2bpt_A 557 DENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVE--------------------------------------PV---A 595 (861)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTG--------------------------------------GG---H
T ss_pred hcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhH--------------------------------------HH---H
Confidence 0345777888888888764331100 00 1
Q ss_pred ccchHHHHHhhcCCCH-hHHHHHHHHHHHhhhcCc-cchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257 442 GHAVEKLIALLDHTNE-KVVEASLAALSTVIDDGV-DIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT 519 (572)
Q Consensus 442 ~g~i~~Lv~lL~~~~~-~v~~~A~~aL~~l~~~~~-~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~ 519 (572)
...++.+++++++.+. .+++.++.+++.++.... .+.. .+- .-++.+.+.+ .+.++.++..++.++..++..
T Consensus 596 ~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~---~l~--~i~~~l~~~l-~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 596 DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEK---YLE--TFSPYLLKAL-NQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHH---HHH--HHHHHHHHHH-HCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHH---HHH--HHHHHHHHHh-ccccHHHHHHHHHHHHHHHHH
Confidence 2367788888888777 899999999999885321 1111 111 2457788888 578888999999999888754
Q ss_pred -hhhhhhhcCCCCchHHHHHHhhcCC--chhHHHHHHHHHhhcc
Q 008257 520 -DDIAYEVSGDPNVSTALVDAFQHAD--YRTRQIAERALKHIDK 560 (572)
Q Consensus 520 -~~~~~~~~~~~~~~~~Lv~ll~~~~--~~~~~~Aa~aL~~L~~ 560 (572)
.+.-..+.. .+...|++.+.+.+ +.+|..+..+|..+.+
T Consensus 670 ~~~~~~~~~~--~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~ 711 (861)
T 2bpt_A 670 LEEDFRRYSD--AMMNVLAQMISNPNARRELKPAVLSVFGDIAS 711 (861)
T ss_dssp TGGGGHHHHH--HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHH
T ss_pred hchhccchHH--HHHHHHHHHhCCccccHhhhHHHHHHHHHHHH
Confidence 211112221 23346778888765 8899999999988876
No 53
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.40 E-value=1.9e-10 Score=126.08 Aligned_cols=258 Identities=10% Similarity=0.099 Sum_probs=185.8
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCc
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDS 158 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~ 158 (572)
+..++++.+.+.+.++-+.-++..++..++.... -++..|.+-|.++ ++.++..|.++|+++...
T Consensus 73 ~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~----l~in~l~kDL~~~-----n~~vr~lAL~~L~~i~~~------ 137 (618)
T 1w63_A 73 LECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL----LMTNCIKNDLNHS-----TQFVQGLALCTLGCMGSS------ 137 (618)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH----HHHHHHHHHHSCS-----SSHHHHHHHHHHHHHCCH------
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH----HHHHHHHHhcCCC-----CHhHHHHHHHHHHhcCCH------
Confidence 8888999999999999988899998865432212 2567777777754 378999999999999631
Q ss_pred cccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHH
Q 008257 159 ITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASI 238 (572)
Q Consensus 159 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~ 238 (572)
. ..+..++.+.++|.+.++.++..|+.++..+..... +.. .+.++.+..+|.+.++.++..|+
T Consensus 138 --------~-~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p---~~v-----~~~~~~l~~lL~D~d~~V~~~Al 200 (618)
T 1w63_A 138 --------E-MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP---ELM-----EMFLPATKNLLNEKNHGVLHTSV 200 (618)
T ss_dssp --------H-HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG---GGG-----GGGGGGTTTSTTCCCHHHHHHHH
T ss_pred --------H-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh---HHH-----HHHHHHHHHHhCCCCHhHHHHHH
Confidence 1 125678999999999999999999999999976432 111 25788888999999999999999
Q ss_pred HHHHHcCCCCChhHHHHHhcccCChhhHHhhhcc---------------CCCChHHHHHHHHHHhcCCCCcHHHHHHHHh
Q 008257 239 ELIQNLSPHMGHELADALRGAVGQLGSLIRVISE---------------NVGISKEQAAAVGLLAELPERDLGLTRQMLD 303 (572)
Q Consensus 239 ~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~---------------~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~ 303 (572)
.+|..++...+ +..+.+. ..++.|+++|.. .+ +-.+...+.+|+.++..+++..+
T Consensus 201 ~~L~~i~~~~~-~~~~~~~---~~v~~l~~~L~~~~~~~~~~~~~~~~~~~--~~~q~~il~~L~~l~~~~~~~~~---- 270 (618)
T 1w63_A 201 VLLTEMCERSP-DMLAHFR---KLVPQLVRILKNLIMSGYSPEHDVSGISD--PFLQVRILRLLRILGRNDDDSSE---- 270 (618)
T ss_dssp HHHHHHCCSHH-HHHHHHH---TTHHHHHHHHHHHHHSCCCTTTCSSSSSC--HHHHHHHHHHHHHHTTTCHHHHH----
T ss_pred HHHHHHHHhCh-HHHHHHH---HHHHHHHHHHHHHHcCCCCccccccCCCC--ChHHHHHHHHHHHhCCCCHHHHH----
Confidence 99999987632 2222333 468888887764 23 36777888999998887765433
Q ss_pred CCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHH
Q 008257 304 EGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSAT 383 (572)
Q Consensus 304 ~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~ 383 (572)
..++.|..++...... ......+.-.++.++..+. .++..+. .+++.|..+|.++ ++.+|..|..
T Consensus 271 -~~~~~L~~l~~~~~~~----~~~~~aV~~ea~~~i~~l~----~~~~l~~-----~a~~~L~~~L~~~-d~~vr~~aL~ 335 (618)
T 1w63_A 271 -AMNDILAQVATNTETS----KNVGNAILYETVLTIMDIK----SESGLRV-----LAINILGRFLLNN-DKNIRYVALT 335 (618)
T ss_dssp -TTHHHHHHHHHTSCCS----STHHHHHHHHHHHHHHHSC----CCHHHHH-----HHHHHHHHHHTCS-STTTHHHHHH
T ss_pred -HHHHHHHHHHhccccc----cchHHHHHHHHHHHHHhcC----CCHHHHH-----HHHHHHHHHHhCC-CCchHHHHHH
Confidence 3455666665431100 0124456667888888775 3454332 3568889999988 8899999999
Q ss_pred HHHHhhhhcc
Q 008257 384 ALENLSLESK 393 (572)
Q Consensus 384 aL~~ls~~~~ 393 (572)
+|..++...+
T Consensus 336 ~L~~i~~~~p 345 (618)
T 1w63_A 336 SLLKTVQTDH 345 (618)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhCH
Confidence 9999886544
No 54
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.35 E-value=6.5e-10 Score=131.90 Aligned_cols=480 Identities=13% Similarity=0.091 Sum_probs=288.6
Q ss_pred CCCCCHHHHHHHHHHHHhhccCcchH-HHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHH
Q 008257 4 SKSENLLTVEKAEKTLANLEKCENNV-RQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCL 81 (572)
Q Consensus 4 ~~s~~~~~~~~A~~~L~~L~~~~~n~-~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~L 81 (572)
+.|.|+..+..|..-|.+....+... ..-.....++.|++.|.+.++++|..|+.+|..++..-.. ... ..+ +.|
T Consensus 15 l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~-~~i~~~L 91 (1230)
T 1u6g_C 15 MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV-ETIVDTL 91 (1230)
T ss_dssp TTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH-HHHHHHH
T ss_pred cCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH-HHHHHHH
Confidence 46788998988888777654432110 0001123567788889989999999999999998762211 111 234 888
Q ss_pred HHhcccCCHHHHHHHHHHHHHhhcCCCcH------HHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCC
Q 008257 82 INIMKSGNMQAREAALKALNQISSCEPSA------KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHD 155 (572)
Q Consensus 82 v~lL~s~~~~~~~~A~~aL~~Ls~~~~~~------~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~ 155 (572)
++.|.++++.+|..|+.+|..++..-... ..-.-...+|.|++.+.+. .+..++..|..+|..++.....
T Consensus 92 l~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~----~~~~~~~~al~~l~~~~~~~~~ 167 (1230)
T 1u6g_C 92 CTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ----EDVSVQLEALDIMADMLSRQGG 167 (1230)
T ss_dssp HHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC----SCHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC----CchHHHHHHHHHHHHHHHHhHh
Confidence 99998888899999999999998532211 1112345788999988631 2378999999999999864321
Q ss_pred CCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCcc------HHHHH------------------
Q 008257 156 FDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTV------LSVVS------------------ 211 (572)
Q Consensus 156 ~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~------~~~~~------------------ 211 (572)
. +. -.....++.|+..|.++++.++..++.+|..++...... +.+..
T Consensus 168 ~----l~-----~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l 238 (1230)
T 1u6g_C 168 L----LV-----NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCI 238 (1230)
T ss_dssp S----CT-----TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHH
T ss_pred H----HH-----HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 1 00 022567888888888888899999999988877542210 00000
Q ss_pred -HHHh----------cCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCC------
Q 008257 212 -AIKS----------SGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENV------ 274 (572)
Q Consensus 212 -~i~~----------~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~------ 274 (572)
.+.+ ...++.++..+...++++|..++.++..++...+.++...+. ..++.+++.+..+.
T Consensus 239 ~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~---~li~~ll~~l~~d~~~~~~~ 315 (1230)
T 1u6g_C 239 AAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS---TIINICLKYLTYDPNYNYDD 315 (1230)
T ss_dssp HHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH---HHHHHHTTCCCCC-------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHH---HHHHHHHHHhCCCCCCCCcc
Confidence 1111 234667777777777889999998888887544433322222 24566666554210
Q ss_pred ----------------------------C-ChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCC
Q 008257 275 ----------------------------G-ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGS 325 (572)
Q Consensus 275 ----------------------------~-~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~ 325 (572)
+ ..++|..|+.++..++...++....+. ...+|.++..+.+
T Consensus 316 d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d--------- 385 (1230)
T 1u6g_C 316 EDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKE--------- 385 (1230)
T ss_dssp -----------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSC---------
T ss_pred cccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCC---------
Confidence 0 013466676666665442222111222 2345555554433
Q ss_pred cchhhHHHHHHHHHHHHhccCCC------Ch-------HHHHHH--HHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 008257 326 RFVTPFLEGLLSVLARVTFVLSD------EP-------DAIALC--CEHNLAALFIELLQSNGLDKVQMVSATALENLSL 390 (572)
Q Consensus 326 ~~~~~~~e~a~~aL~~l~~~~~~------~~-------~~~~~i--~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~ 390 (572)
....++..++.++..+...... ++ .....+ .-..++|.+.+.|+++ ++.+|..+..+|..++.
T Consensus 386 -~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~-~~~vr~~~~~~L~~l~~ 463 (1230)
T 1u6g_C 386 -REENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK-SVKTRQCCFNMLTELVN 463 (1230)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 1345566666666555421000 00 001111 1123556666778888 88899888888888875
Q ss_pred hccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCH--hHHHHHHHHHH
Q 008257 391 ESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNE--KVVEASLAALS 468 (572)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~--~v~~~A~~aL~ 468 (572)
..+.. + . . + -...++.++++|.+.++ .++..++.++.
T Consensus 464 ~~~~~--------------l-----------------------~-~-~--l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~ 502 (1230)
T 1u6g_C 464 VLPGA--------------L-----------------------T-Q-H--IPVLVPGIIFSLNDKSSSSNLKIDALSCLY 502 (1230)
T ss_dssp HSTTT--------------T-----------------------G-G-G--HHHHHHHHHHHTTCSSSCHHHHHHHHHHHH
T ss_pred Hchhh--------------h-----------------------H-H-H--HHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 42100 0 0 0 0 12367888999987654 89999999999
Q ss_pred HhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc-hh-------hhhhhcCCCCchHHHHHHh
Q 008257 469 TVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT-DD-------IAYEVSGDPNVSTALVDAF 540 (572)
Q Consensus 469 ~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~-~~-------~~~~~~~~~~~~~~Lv~ll 540 (572)
.+...... +.....+ ..-++.++..+ .+++..++..|+.++..++.. .. .-..+.. .+.+.|+..+
T Consensus 503 ~~~~~~~~-~~~~~~l--~~llp~L~~~l-~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~--~ll~~ll~~l 576 (1230)
T 1u6g_C 503 VILCNHSP-QVFHPHV--QALVPPVVACV-GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIK--DLFTCTIKRL 576 (1230)
T ss_dssp HHHHSSCG-GGGHHHH--TTTHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHH--HHHHHHHHHH
T ss_pred HHHHhCCH-HHHHhHH--HHHHHHHHHHH-cccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHH--HHHHHHHHHH
Confidence 88753210 1111111 24577888888 477777877888888877743 11 0011111 1223567777
Q ss_pred --hcCCchhHHHHHHHHHhhccc
Q 008257 541 --QHADYRTRQIAERALKHIDKI 561 (572)
Q Consensus 541 --~~~~~~~~~~Aa~aL~~L~~~ 561 (572)
.+.++.+|..|..+|..|...
T Consensus 577 ~~~d~~~~vr~~a~~~lg~L~~~ 599 (1230)
T 1u6g_C 577 KAADIDQEVKERAISCMGQIICN 599 (1230)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHH
Confidence 566788999999999988764
No 55
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.35 E-value=3.1e-11 Score=113.38 Aligned_cols=188 Identities=16% Similarity=0.193 Sum_probs=153.9
Q ss_pred cCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHH
Q 008257 35 NGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI 114 (572)
Q Consensus 35 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv 114 (572)
.+.++.|++.|++++..+|..++..|..+.. ...++.|+++|+++++.++..|+++|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC---------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence 4568999999999999999999999987643 1234999999999999999999999999753
Q ss_pred HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHH
Q 008257 115 HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQ 194 (572)
Q Consensus 115 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~ 194 (572)
.++++.|+++|.+. ++.++..|+++|+++.. ...++.|+.++.++++.++..+++
T Consensus 80 -~~~~~~L~~~l~~~-----~~~vr~~a~~aL~~~~~-------------------~~~~~~L~~~l~d~~~~vr~~a~~ 134 (211)
T 3ltm_A 80 -ERAVEPLIKALKDE-----DGWVRQSAAVALGQIGD-------------------ERAVEPLIKALKDEDWFVRIAAAF 134 (211)
T ss_dssp -GGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHCC-------------------GGGHHHHHHHTTCSSHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCc-------------------HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 35789999999754 37899999999998842 346899999999999999999999
Q ss_pred HHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCC
Q 008257 195 VLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENV 274 (572)
Q Consensus 195 aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~ 274 (572)
+|..+.. ...++.|..+++++++.+|..|+.+|..+... .+++.|..++.+++
T Consensus 135 aL~~~~~--------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-------------~~~~~L~~~l~d~~ 187 (211)
T 3ltm_A 135 ALGEIGD--------------ERAVEPLIKALKDEDGWVRQSAADALGEIGGE-------------RVRAAMEKLAETGT 187 (211)
T ss_dssp HHHHHCC--------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH-------------HHHHHHHHHHHHCC
T ss_pred HHHHcCC--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCch-------------hHHHHHHHHHhCCC
Confidence 9987742 34788999999999999999999999988431 24677888888777
Q ss_pred CChHHHHHHHHHHhcCCCCc
Q 008257 275 GISKEQAAAVGLLAELPERD 294 (572)
Q Consensus 275 ~~~~~~~~A~~~L~~L~~~~ 294 (572)
. .++..|..+|.++....
T Consensus 188 ~--~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 188 G--FARKVAVNYLETHKSFN 205 (211)
T ss_dssp H--HHHHHHHHHHHC-----
T ss_pred H--HHHHHHHHHHHhcCCCC
Confidence 5 89999999999987643
No 56
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.34 E-value=1.2e-10 Score=133.02 Aligned_cols=430 Identities=11% Similarity=0.093 Sum_probs=267.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhccc--CCHHHHHHHHHHHHHhhcCC-CcHHHH--
Q 008257 40 PLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKS--GNMQAREAALKALNQISSCE-PSAKVL-- 113 (572)
Q Consensus 40 ~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s--~~~~~~~~A~~aL~~Ls~~~-~~~~~i-- 113 (572)
.++.-+.+++.++|..|...|.++..+ ...+. +.|+..|.+ .++.+|..|+-+|.+..... +.++..
T Consensus 5 ~~L~~~~s~d~~~r~~A~~~L~~~~~~-------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (876)
T 1qgr_A 5 TILEKTVSPDRLELEAAQKFLERAAVE-------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (876)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhc-------ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHH
Confidence 344455677888999999988764321 01355 888888876 35889999999999965432 111110
Q ss_pred ---------HHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcC
Q 008257 114 ---------IHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNT 184 (572)
Q Consensus 114 ---------v~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~ 184 (572)
.....-+.|++.|.+. ++.+ ..++.+++.++....... .-...++.|+..+.++
T Consensus 78 ~~w~~l~~~~~~~ik~~ll~~l~~~-----~~~~-~~~~~~l~~i~~~~~~~~-----------~w~~ll~~l~~~l~~~ 140 (876)
T 1qgr_A 78 QRWLAIDANARREVKNYVLHTLGTE-----TYRP-SSASQCVAGIACAEIPVN-----------QWPELIPQLVANVTNP 140 (876)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTTC-----CSSS-CHHHHHHHHHHHHHGGGT-----------CCTTHHHHHHHHHHCT
T ss_pred hhhccCCHHHHHHHHHHHHHHhCCC-----cHHH-HHHHHHHHHHHHhhCccc-----------ccHHHHHHHHHHHhCC
Confidence 0111223377777653 2455 789999999987521000 1145799999999988
Q ss_pred --ChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHHcCCCCChhHHHHHhccc
Q 008257 185 --GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP--QNDLRLASIELIQNLSPHMGHELADALRGAV 260 (572)
Q Consensus 185 --~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~ 260 (572)
++.++..++.+|..++..... +..... -...++.+...+.++ +..+|..|+++|..+....+..........
T Consensus 141 ~~~~~~r~~al~~l~~l~~~~~~-~~~~~~--~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~- 216 (876)
T 1qgr_A 141 NSTEHMKESTLEAIGYICQDIDP-EQLQDK--SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH- 216 (876)
T ss_dssp TCCHHHHHHHHHHHHHHHHHSCH-HHHGGG--HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHH-
T ss_pred CCCHHHHHHHHHHHHHHHHhcCH-hhHHhH--HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-
Confidence 899999999999988764211 111100 123466777788776 578999999999988754222211011111
Q ss_pred CChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHH
Q 008257 261 GQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLA 340 (572)
Q Consensus 261 g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~ 340 (572)
..++.+...+..++. +++..+..+|..+....+......+....++.++..+.+ ....+...++..+.
T Consensus 217 ~il~~l~~~~~~~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~v~~~al~~l~ 284 (876)
T 1qgr_A 217 FIMQVVCEATQCPDT--RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS----------DIDEVALQGIEFWS 284 (876)
T ss_dssp HHHHHHHHHTTCSSH--HHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC----------SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC----------CchHHHHHHHHHHH
Confidence 246666777766554 888889888888765333322233334567777666543 23455666777666
Q ss_pred HHhccCC------------------CChHHHHHHHHcCchHHHHHHhccC------CcHHHHHHHHHHHHHhhhhccccC
Q 008257 341 RVTFVLS------------------DEPDAIALCCEHNLAALFIELLQSN------GLDKVQMVSATALENLSLESKNLT 396 (572)
Q Consensus 341 ~l~~~~~------------------~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~~vk~~Aa~aL~~ls~~~~~~~ 396 (572)
.++.... ......+... ..++|.+++.|... .+..+|..|+.+|..++...+..
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~- 362 (876)
T 1qgr_A 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD- 362 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG-
T ss_pred HHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh-
Confidence 6652100 0000111011 24577888887531 14568888888888887532200
Q ss_pred CCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCcc
Q 008257 397 KLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVD 476 (572)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~ 476 (572)
++ ...++.+.+.|.+.+..++.+|+.+|+.++.....
T Consensus 363 ------------------------------------------~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~ 399 (876)
T 1qgr_A 363 ------------------------------------------IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP 399 (876)
T ss_dssp ------------------------------------------GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH
T ss_pred ------------------------------------------hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCH
Confidence 11 13567777888899999999999999999854210
Q ss_pred chhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc-hhh--hhhhcCCCCchHHHHHHhhcCCchhHHHHHH
Q 008257 477 IEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT-DDI--AYEVSGDPNVSTALVDAFQHADYRTRQIAER 553 (572)
Q Consensus 477 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~-~~~--~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~ 553 (572)
+.....+ .+.++.++..| .++++.++..|++++.+++.. ... ...+.. .+...|++.+.+. ++++..|++
T Consensus 400 -~~~~~~~--~~~l~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~--~~l~~l~~~l~~~-~~v~~~a~~ 472 (876)
T 1qgr_A 400 -SQLKPLV--IQAMPTLIELM-KDPSVVVRDTAAWTVGRICELLPEAAINDVYLA--PLLQCLIEGLSAE-PRVASNVCW 472 (876)
T ss_dssp -HHHHHHH--HHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH--HHHHHHHHHTTSC-HHHHHHHHH
T ss_pred -HHHHHHH--HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhCchhcccHHHHH--HHHHHHHHHHcCC-HHHHHHHHH
Confidence 0111111 23578888999 588899999999999999865 211 011111 2224677788774 899999999
Q ss_pred HHHhhccc
Q 008257 554 ALKHIDKI 561 (572)
Q Consensus 554 aL~~L~~~ 561 (572)
+|..+...
T Consensus 473 al~~l~~~ 480 (876)
T 1qgr_A 473 AFSSLAEA 480 (876)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998864
No 57
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.32 E-value=4.4e-11 Score=112.34 Aligned_cols=192 Identities=18% Similarity=0.169 Sum_probs=150.1
Q ss_pred CChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHH
Q 008257 261 GQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLA 340 (572)
Q Consensus 261 g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~ 340 (572)
..++.|+++|.+++. .++..|+..|..+.. .++++.|+.+|.+ .+..++..++.+|.
T Consensus 19 ~~~~~L~~~L~~~~~--~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~----------~~~~vr~~a~~aL~ 75 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSY--YVRRAAAYALGKIGD-----------ERAVEPLIKALKD----------EDAWVRRAAADALG 75 (211)
T ss_dssp GGHHHHHHHTTCSSH--HHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC----------SCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCH--HHHHHHHHHHHHhCC-----------ccHHHHHHHHHcC----------CCHHHHHHHHHHHH
Confidence 678999999998775 899999999887643 3678899999876 24667888999998
Q ss_pred HHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCcc
Q 008257 341 RVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVI 420 (572)
Q Consensus 341 ~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (572)
++. ++ +.+|.|+++|+++ ++.++..|+.+|+.+.
T Consensus 76 ~~~-----~~---------~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~------------------------------- 109 (211)
T 3ltm_A 76 QIG-----DE---------RAVEPLIKALKDE-DGWVRQSAAVALGQIG------------------------------- 109 (211)
T ss_dssp HHC-----CG---------GGHHHHHHHTTCS-SHHHHHHHHHHHHHHC-------------------------------
T ss_pred hhC-----CH---------HHHHHHHHHHcCC-CHHHHHHHHHHHHHhC-------------------------------
Confidence 875 33 4679999999998 9999999999998763
Q ss_pred ccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhc
Q 008257 421 TGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEK 500 (572)
Q Consensus 421 ~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~ 500 (572)
+..+++.|+++|+++++.|+..|+.+|+.+.. ..+++.|.+++ .+
T Consensus 110 --------------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------------~~~~~~L~~~l-~d 154 (211)
T 3ltm_A 110 --------------------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------------ERAVEPLIKAL-KD 154 (211)
T ss_dssp --------------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------------GGGHHHHHHHT-TC
T ss_pred --------------------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHH-cC
Confidence 12478999999999999999999999998842 13578888999 58
Q ss_pred CCHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcccCCCCCC
Q 008257 501 RTENLQRRAVWVVERILRTDDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIPNFSGI 567 (572)
Q Consensus 501 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~s~~ 567 (572)
+++.++..|+.+|.++-. ......|.++++++++.+|..|..+|..+...+...+.
T Consensus 155 ~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~~ 210 (211)
T 3ltm_A 155 EDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNHHHHH 210 (211)
T ss_dssp SSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----------
T ss_pred CCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCCCC
Confidence 999999999999988732 12224799999999999999999999999886655443
No 58
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.30 E-value=1e-10 Score=123.17 Aligned_cols=387 Identities=10% Similarity=0.089 Sum_probs=247.2
Q ss_pred CCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccC--CHHHHHHHHHHHHHhccCcc-hh--------HHH
Q 008257 5 KSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEG--PQETKLSLAAFLGDLALNSD-VK--------VLV 73 (572)
Q Consensus 5 ~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~--~~~~~~~aa~~L~~l~~~~~-~k--------~~i 73 (572)
.|.|+.+++.|...|..+...+ ..+++..|+..|.++ +..+|..|+..|.++..... .+ ..+
T Consensus 11 ~s~d~~~r~~Ae~~L~~~~~~~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l 83 (462)
T 1ibr_B 11 VSPDRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI 83 (462)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTS
T ss_pred cCCCHHHHHHHHHHHHHHHhhC-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcC
Confidence 5788889999999888866421 124556777777765 57889999999999764221 10 011
Q ss_pred ---HhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCC--C-cHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHH
Q 008257 74 ---ARTVG-SCLINIMKSGNMQAREAALKALNQISSCE--P-SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATIL 146 (572)
Q Consensus 74 ---~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~--~-~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L 146 (572)
....+ ..|++.|.++++.+ ..++.++..++..+ + .+ .+.+|.|++.+.+.. .++.+++.|..+|
T Consensus 84 ~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w-----~~ll~~L~~~l~~~~---~~~~~r~~al~~l 154 (462)
T 1ibr_B 84 DANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQW-----PELIPQLVANVTNPN---STEHMKESTLEAI 154 (462)
T ss_dssp CHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCC-----TTHHHHHHHHHHCTT---CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccccc-----HHHHHHHHHHhccCC---CCHHHHHHHHHHH
Confidence 12345 77889998888778 88999999998642 1 22 467899999997630 0378999999999
Q ss_pred HHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcC--ChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHH
Q 008257 147 ANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNT--GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQ 224 (572)
Q Consensus 147 ~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~ 224 (572)
..++..... . .. .-.....++.++..+.+. +++++..+++++..+...-.. .........-.++.|..
T Consensus 155 ~~l~~~~~~--~-~~-----~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~--~~~~~~~~~~l~~~l~~ 224 (462)
T 1ibr_B 155 GYICQDIDP--E-QL-----QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA--NFDKESERHFIMQVVCE 224 (462)
T ss_dssp HHHHHHSCG--G-GT-----GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH--HHTSHHHHHHHHHHHHH
T ss_pred HHHHHhCCc--h-hh-----HhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHH
Confidence 999874210 0 00 112245788888999877 789999999999987643210 00000001113666777
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHh-
Q 008257 225 FVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLD- 303 (572)
Q Consensus 225 lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~- 303 (572)
++.++++++|..++++|..+....+..+...+.. ..++.++..+...++ .++..|+..+..++...... ..+.+
T Consensus 225 ~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~--~v~~~a~~~l~~~~~~~~~~-~~~~~~ 299 (462)
T 1ibr_B 225 ATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP--ALFAITIEAMKSDID--EVALQGIEFWSNVCDEEMDL-AIEASE 299 (462)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTT--THHHHHHHHHHCSSH--HHHHHHHHHHHHHHHHHHHH-HHHHCC
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHcCCch--HHHHHHHHHHHHHHHHHHHH-HHhccc
Confidence 7788889999999999998875433222111110 245566666666554 78888888777765421110 00100
Q ss_pred --------------------CCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchH
Q 008257 304 --------------------EGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAA 363 (572)
Q Consensus 304 --------------------~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~ 363 (572)
...+|.++..+.+......+ ....++..++.+|..++... ++ .+. ..++|
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~---~~~~~r~~a~~~L~~l~~~~---~~---~~~-~~~~~ 369 (462)
T 1ibr_B 300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDD---DDWNPCKAAGVCLMLLATCC---ED---DIV-PHVLP 369 (462)
T ss_dssp TTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCT---TCCSHHHHHHHHHHHHHHHT---TT---THH-HHHHH
T ss_pred ccccCCCccchhHHHHHHHhhhccHHHHHHHHhccccccc---ccchHHHHHHHHHHHHHHhc---cH---HHH-HHHHH
Confidence 22455555555432100000 12245667778887777542 11 111 24678
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhcc
Q 008257 364 LFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGH 443 (572)
Q Consensus 364 ~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g 443 (572)
.+.+.|+++ +..+|..|..+++.++...... . + .. . -..
T Consensus 370 ~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~-~----------------~-------------------~~--~--l~~ 408 (462)
T 1ibr_B 370 FIKEHIKNP-DWRYRDAAVMAFGCILEGPEPS-Q----------------L-------------------KP--L--VIQ 408 (462)
T ss_dssp HHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTT-T----------------T-------------------CT--T--TTT
T ss_pred HHHHHhcCC-ChHHHHHHHHHHHHHhcCCcHH-H----------------H-------------------HH--H--HHH
Confidence 888888888 8999999999999988532100 0 0 00 0 135
Q ss_pred chHHHHHhhcCCCHhHHHHHHHHHHHhhhc
Q 008257 444 AVEKLIALLDHTNEKVVEASLAALSTVIDD 473 (572)
Q Consensus 444 ~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~ 473 (572)
.+|.|+++|.++++.|+.+|+++|+.++..
T Consensus 409 ~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 409 AMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999999864
No 59
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.30 E-value=6.2e-11 Score=110.41 Aligned_cols=184 Identities=16% Similarity=0.200 Sum_probs=153.0
Q ss_pred CCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHH
Q 008257 36 GRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIH 115 (572)
Q Consensus 36 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~ 115 (572)
+..+.++++|.+++..+|..|+.+|..+.. ...++.|+++|+++++.++..|+.+|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~---------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD---------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC---------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------
Confidence 457889999999999999999999986653 1234999999999999999999999998753
Q ss_pred cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHH
Q 008257 116 AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQV 195 (572)
Q Consensus 116 ~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~a 195 (572)
..+++.|+++|.+. ++.+|..|+++|+++.. ...++.|+.+|.++++.++..++++
T Consensus 75 ~~~~~~L~~~l~d~-----~~~vr~~a~~aL~~~~~-------------------~~~~~~L~~~l~d~~~~vr~~a~~a 130 (201)
T 3ltj_A 75 ERAVEPLIKALKDE-----DGWVRQSAAVALGQIGD-------------------ERAVEPLIKALKDEDWFVRIAAAFA 130 (201)
T ss_dssp GGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHCC-------------------GGGHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCc-------------------HHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 25789999999753 38899999999998832 2468999999999999999999999
Q ss_pred HHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC
Q 008257 196 LVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG 275 (572)
Q Consensus 196 L~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~ 275 (572)
|..+.. ...++.|+.++.++++.+|..|+++|..+.. . .+++.|..++.+++.
T Consensus 131 L~~~~~--------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---~----------~~~~~L~~~l~d~~~ 183 (201)
T 3ltj_A 131 LGEIGD--------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---E----------RVRAAMEKLAETGTG 183 (201)
T ss_dssp HHHHTC--------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---H----------HHHHHHHHHHHHCCH
T ss_pred HHHhCC--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---h----------hHHHHHHHHHhCCCH
Confidence 987742 3478899999999999999999999998842 1 246778888877774
Q ss_pred ChHHHHHHHHHHhcCC
Q 008257 276 ISKEQAAAVGLLAELP 291 (572)
Q Consensus 276 ~~~~~~~A~~~L~~L~ 291 (572)
.++..|..+|.++.
T Consensus 184 --~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 184 --FARKVAVNYLETHK 197 (201)
T ss_dssp --HHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHHH
Confidence 89999999998874
No 60
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.28 E-value=1e-10 Score=123.27 Aligned_cols=388 Identities=12% Similarity=0.116 Sum_probs=242.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccC--CHHHHHHHHHHHHHhhcCCCc-H-----
Q 008257 40 PLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSG--NMQAREAALKALNQISSCEPS-A----- 110 (572)
Q Consensus 40 ~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~--~~~~~~~A~~aL~~Ls~~~~~-~----- 110 (572)
.++.-+.+++.++|..|...|..+...+ ..+. +.|+.+|.++ ++.+|..|+..|.++...... .
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhC-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3444455677888888888887643310 1245 7788888764 678999999999998754211 0
Q ss_pred ---HHH---HHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcC
Q 008257 111 ---KVL---IHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNT 184 (572)
Q Consensus 111 ---~~i---v~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~ 184 (572)
..+ .....-..|+..|.+. +..+ ..++.+++.++...... + .-.+.++.|+..+.++
T Consensus 78 ~~~~~l~~~~~~~ik~~ll~~l~~~-----~~~v-~~~~~~i~~ia~~~~~~--------~---~w~~ll~~L~~~l~~~ 140 (462)
T 1ibr_B 78 QRWLAIDANARREVKNYVLQTLGTE-----TYRP-SSASQCVAGIACAEIPV--------N---QWPELIPQLVANVTNP 140 (462)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTCC-----CSSS-CSHHHHHHHHHHHHGGG--------T---CCTTHHHHHHHHHHCT
T ss_pred hhhhcCCHHHHHHHHHHHHHHhCCC-----Cchh-hHHHHHHHHHHHHhccc--------c---ccHHHHHHHHHHhccC
Confidence 000 1122334466777653 2456 78999999998753100 0 1146899999999988
Q ss_pred --ChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHHcCCCCChhHH-HHHhcc
Q 008257 185 --GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP--QNDLRLASIELIQNLSPHMGHELA-DALRGA 259 (572)
Q Consensus 185 --~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~Ls~~~~~~~~-~~i~~~ 259 (572)
++.++..++.+|..++..... +..... -...++.++..+.+. ++.+|..|++++.++......... ..+..
T Consensus 141 ~~~~~~r~~al~~l~~l~~~~~~-~~~~~~--~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~- 216 (462)
T 1ibr_B 141 NSTEHMKESTLEAIGYICQDIDP-EQLQDK--SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH- 216 (462)
T ss_dssp TCCHHHHHHHHHHHHHHHHHSCG-GGTGGG--HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHH-
T ss_pred CCCHHHHHHHHHHHHHHHHhCCc-hhhHhH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-
Confidence 899999999999998863211 000101 023677888899887 689999999999987643211110 01111
Q ss_pred cCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHH
Q 008257 260 VGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVL 339 (572)
Q Consensus 260 ~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL 339 (572)
-.++.|.+.+.+++. +++..++.+|..+....+..-...+..+.++.++..+++ ....+...++..+
T Consensus 217 -~l~~~l~~~~~~~~~--~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~v~~~a~~~l 283 (462)
T 1ibr_B 217 -FIMQVVCEATQCPDT--RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS----------DIDEVALQGIEFW 283 (462)
T ss_dssp -HHHHHHHHHTTCSSH--HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC----------SSHHHHHHHHHHH
T ss_pred -HHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CchHHHHHHHHHH
Confidence 135566666665553 888888888887754322211111222556666666654 2455677788877
Q ss_pred HHHhccCCCChHH------------------HHHH--HHcCchHHHHHHhccC------CcHHHHHHHHHHHHHhhhhcc
Q 008257 340 ARVTFVLSDEPDA------------------IALC--CEHNLAALFIELLQSN------GLDKVQMVSATALENLSLESK 393 (572)
Q Consensus 340 ~~l~~~~~~~~~~------------------~~~i--~~~g~i~~Lv~lL~~~------~~~~vk~~Aa~aL~~ls~~~~ 393 (572)
..++.. ..+. ...+ .-..++|.+++.|... .+..++..|+.+|..++..-+
T Consensus 284 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~ 360 (462)
T 1ibr_B 284 SNVCDE---EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE 360 (462)
T ss_dssp HHHHHH---HHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHH---HHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc
Confidence 777631 0000 0000 0133567777777542 134688889999988875322
Q ss_pred ccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhc
Q 008257 394 NLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDD 473 (572)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~ 473 (572)
. . ++ ...++.+.+.|.+++..++.+|+.+|+.++..
T Consensus 361 ~--~-----------------------------------------~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 361 D--D-----------------------------------------IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (462)
T ss_dssp T--T-----------------------------------------HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred H--H-----------------------------------------HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 0 0 11 23667788889999999999999999999953
Q ss_pred CccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257 474 GVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT 519 (572)
Q Consensus 474 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~ 519 (572)
.. . +..... -...++.++..| .++++.+|..|+++|.+++..
T Consensus 397 ~~-~-~~~~~~-l~~~~~~l~~~l-~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 397 PE-P-SQLKPL-VIQAMPTLIELM-KDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp SC-T-TTTCTT-TTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHH
T ss_pred Cc-H-HHHHHH-HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHh
Confidence 21 0 000011 135678899999 588999999999999999854
No 61
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.27 E-value=9.5e-11 Score=109.15 Aligned_cols=176 Identities=16% Similarity=0.208 Sum_probs=148.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHH
Q 008257 3 SSKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLI 82 (572)
Q Consensus 3 ~~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv 82 (572)
+++++|+.++..|..+|..+.. .+.++.|+++|.++++.+|..++.+|+.+... ..++.|+
T Consensus 22 ~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~---------~~~~~L~ 82 (201)
T 3ltj_A 22 NLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE---------RAVEPLI 82 (201)
T ss_dssp HTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---------GGHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH---------HHHHHHH
Confidence 5788999999999999988764 35689999999999999999999999876431 2349999
Q ss_pred HhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccC
Q 008257 83 NIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVG 162 (572)
Q Consensus 83 ~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~ 162 (572)
++|+++++.++..|+++|.++.. ..+++.|+++|.+. ++.++..|+++|+++..
T Consensus 83 ~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-----~~~vr~~a~~aL~~~~~----------- 136 (201)
T 3ltj_A 83 KALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE-----DWFVRIAAAFALGEIGD----------- 136 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHTC-----------
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCC-----------
Confidence 99999999999999999999753 34789999999753 38899999999999842
Q ss_pred CCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHH
Q 008257 163 PDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQ 242 (572)
Q Consensus 163 ~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~ 242 (572)
...++.|+.++.++++.++..++++|..+.. ..+++.|..+++++++.+|..|..+|.
T Consensus 137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 194 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--------------ERVRAAMEKLAETGTGFARKVAVNYLE 194 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3478999999999999999999999988731 236788999999999999999999998
Q ss_pred HcC
Q 008257 243 NLS 245 (572)
Q Consensus 243 ~Ls 245 (572)
.+.
T Consensus 195 ~l~ 197 (201)
T 3ltj_A 195 THK 197 (201)
T ss_dssp HCC
T ss_pred HHH
Confidence 875
No 62
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.25 E-value=1.4e-08 Score=111.00 Aligned_cols=458 Identities=9% Similarity=0.070 Sum_probs=279.2
Q ss_pred CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHH
Q 008257 4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLIN 83 (572)
Q Consensus 4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~ 83 (572)
.+|+|....+.+--.+..++..+.....+ .+..+.+-|+++++-.+..|..+|+++... .+.+.-.|.+.+
T Consensus 83 ~~s~~~~~Krl~YL~l~~~~~~~~e~~~L----~iN~l~kDl~~~n~~ir~lALr~L~~i~~~-----e~~~~l~~~v~~ 153 (621)
T 2vgl_A 83 LSSNRYTEKQIGYLFISVLVNSNSELIRL----INNAIKNDLASRNPTFMGLALHCIANVGSR-----EMAEAFAGEIPK 153 (621)
T ss_dssp GGCSCHHHHHHHHHHHHHSCCCCHHHHHH----HHHHHHHHHHSCCHHHHHHHHHHHHHHCCH-----HHHHHHTTHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHccCCcHHHHH----HHHHHHHhcCCCCHHHHHHHHHHhhccCCH-----HHHHHHHHHHHH
Confidence 46778877777777777777644332222 245677778899999999999999988542 233333399999
Q ss_pred hc--ccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCcccc
Q 008257 84 IM--KSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITV 161 (572)
Q Consensus 84 lL--~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~ 161 (572)
+| .+.++.+|..|+-++.++....+. .+-..+.++.|.++|... ++.++..|..+|..++..+..
T Consensus 154 ~l~~~d~~~~VRK~A~~al~kl~~~~p~--~~~~~~~~~~l~~lL~d~-----d~~V~~~a~~~l~~i~~~~~~------ 220 (621)
T 2vgl_A 154 ILVAGDTMDSVKQSAALCLLRLYRTSPD--LVPMGDWTSRVVHLLNDQ-----HLGVVTAATSLITTLAQKNPE------ 220 (621)
T ss_dssp HHHCSSSCHHHHHHHHHHHHHHHHHCGG--GCCCCSCHHHHHHHTTCS-----CHHHHHHHHHHHHHHHHHCHH------
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhChh--hcCchhHHHHHHHHhCCC-----CccHHHHHHHHHHHHHHhChH------
Confidence 99 888999999999999999974332 222358899999999643 378999999999999875321
Q ss_pred CCCccccchhhhHHHHHHHHh----cC-------------ChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHH
Q 008257 162 GPDNQTLVSEDIVHNLLHLIS----NT-------------GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQ 224 (572)
Q Consensus 162 ~~~~~~l~~~~~i~~Lv~lL~----~~-------------~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~ 224 (572)
.-...+|.+++.|. .+ ++-.|...++.|..++...+ .+.+..+.+ .+..++.
T Consensus 221 -------~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d--~~~~~~l~~--~L~~il~ 289 (621)
T 2vgl_A 221 -------EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPED--PAVRGRLTE--CLETILN 289 (621)
T ss_dssp -------HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSS--HHHHHHHHH--HHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCC--HHHHHHHHH--HHHHHHH
Confidence 00124555555443 21 57789999999999886432 233433322 3333333
Q ss_pred Hh---------cCCCH--HHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCC
Q 008257 225 FV---------EAPQN--DLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPER 293 (572)
Q Consensus 225 lL---------~~~~~--~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~ 293 (572)
.+ ++.+. .+.-.|++++..+.. ..+ +.. .++..|.++|.++++ .++..|+..|..+...
T Consensus 290 ~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~--~~~----~~~--~~~~~L~~~L~~~~~--niry~aL~~l~~l~~~ 359 (621)
T 2vgl_A 290 KAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS--EPN----LLV--RACNQLGQFLQHRET--NLRYLALESMCTLASS 359 (621)
T ss_dssp HHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC--CHH----HHH--HHHHHHHHHSSCSCH--HHHHHHHHHHHHHTTC
T ss_pred hhccCcccccccccchHHHHHHHHHHHHHhcCC--cHH----HHH--HHHHHHHHHhcCCCc--chHHHHHHHHHHHHhc
Confidence 22 11222 667777888888762 223 222 367889999987765 8999999999998875
Q ss_pred cHHHHHHHHhCCChHHHHHHHh-hhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccC
Q 008257 294 DLGLTRQMLDEGAFGLIFSRVK-SIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSN 372 (572)
Q Consensus 294 ~~~~~~~l~~~g~l~~Lv~lL~-~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~ 372 (572)
.+.. ..+. ...+.++.+|+ + .+..++..++..|..++ ++++.+.+ +..|.+.+...
T Consensus 360 ~~~~-~~~~--~~~~~i~~~L~~d----------~d~~Ir~~aL~lL~~l~-----~~~Nv~~I-----v~eL~~yl~~~ 416 (621)
T 2vgl_A 360 EFSH-EAVK--THIETVINALKTE----------RDVSVRQRAVDLLYAMC-----DRSNAQQI-----VAEMLSYLETA 416 (621)
T ss_dssp TTTH-HHHH--TTHHHHHHHHTTC----------CCHHHHHHHHHHHHHHC-----CHHHHHHH-----HHHHHHHHHHC
T ss_pred cCcH-HHHH--HHHHHHHHHhccC----------CCHhHHHHHHHHHHHHc-----ChhhHHHH-----HHHHHHHHHhc
Confidence 4321 2222 35677778887 4 24567888999999988 56555443 45567777777
Q ss_pred CcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCC-ccccccccCCCccccccccccCccCccchhhh------hhccch
Q 008257 373 GLDKVQMVSATALENLSLESKNLTKLPELPPSGFC-ASIFPCFSKQPVITGLCRLHRGLCSLKETFCL------LEGHAV 445 (572)
Q Consensus 373 ~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l------~~~g~i 445 (572)
+.+.+..+..+++.++..-+... .++ ..++..+....+ + +...++ ..-..+ .+..++
T Consensus 417 -d~~~~~~~v~~I~~la~k~~~~~--------~~~v~~Ll~ll~~~~~-~----v~~ev~--~~l~~ii~~~~~~~~~~~ 480 (621)
T 2vgl_A 417 -DYSIREEIVLKVAILAEKYAVDY--------TWYVDTILNLIRIAGD-Y----VSEEVW--YRVIQIVINRDDVQGYAA 480 (621)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCSST--------HHHHHHHHHHHHHHGG-G----SCSHHH--HHHHHHHGGGCSCHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHhcCCcH--------HHHHHHHHHHHHhhcc-c----chHHHH--HHHHHHHhCChhHHHHHH
Confidence 88999999999998875321100 000 001111110000 0 000000 000000 122345
Q ss_pred HHHHHhhcCCC--HhHHHHHHHHHHHhhhcCccchhhHHHHHhcCC------hHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257 446 EKLIALLDHTN--EKVVEASLAALSTVIDDGVDIEQGVMVLCEAQG------IKPILDVLLEKRTENLQRRAVWVVERIL 517 (572)
Q Consensus 446 ~~Lv~lL~~~~--~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~------i~~L~~lL~~~~~~~~~~~a~~~l~~l~ 517 (572)
..|++.|..+. ..+...++|.|+..... +.+..+ +..+..-+ ...++.+|..++.++.+++
T Consensus 481 ~~l~~~l~~~~~~~~li~~~~wilGEy~~~----------~~~~~~~~p~~~l~~l~~~~-~~~~~~v~~~~Lta~~Kl~ 549 (621)
T 2vgl_A 481 KTVFEALQAPACHENLVKVGGYILGEFGNL----------IAGDPRSSPLIQFNLLHSKF-HLCSVPTRALLLSTYIKFV 549 (621)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHHHHHHTHH----------HHSSTTSCHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHhcchHHH----------hcccCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHH
Confidence 56666666532 34555566666655421 112222 22333334 2567889999999999988
Q ss_pred cc-hhhhhhhcCCCCchHHHHH-Hhh--cCCchhHHHHHHHHHhhccc
Q 008257 518 RT-DDIAYEVSGDPNVSTALVD-AFQ--HADYRTRQIAERALKHIDKI 561 (572)
Q Consensus 518 ~~-~~~~~~~~~~~~~~~~Lv~-ll~--~~~~~~~~~Aa~aL~~L~~~ 561 (572)
.. ++.... +. .+++ ... +.|+++|++|...+.-|...
T Consensus 550 ~~~p~~~~~------i~-~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~ 590 (621)
T 2vgl_A 550 NLFPEVKAT------IQ-DVLRSDSQLKNADVELQQRAVEYLRLSTVA 590 (621)
T ss_dssp HHCGGGHHH------HH-HHHSSHHHHSCSSHHHHHHHHHHHHHHHSS
T ss_pred HHChHHHHH------HH-HHHHHHhcCCCCCHHHHHHHHHHHHHHccC
Confidence 43 332211 11 2222 223 78899999999998888653
No 63
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.19 E-value=3e-09 Score=126.19 Aligned_cols=469 Identities=12% Similarity=0.104 Sum_probs=278.7
Q ss_pred CCCCHHHHHHHHHHHHhhccC-cch------HHHHHHcCCcHHHHHHHc-cCCHHHHHHHHHHHHHhccC--cchhHHHH
Q 008257 5 KSENLLTVEKAEKTLANLEKC-ENN------VRQMAENGRLQPLLTQIL-EGPQETKLSLAAFLGDLALN--SDVKVLVA 74 (572)
Q Consensus 5 ~s~~~~~~~~A~~~L~~L~~~-~~n------~~~i~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~~~--~~~k~~i~ 74 (572)
.++++.++..|..+|..++.. ... .... -...++.|+..+. +++..++..|..+|..+... ...... .
T Consensus 96 ~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~-~ 173 (1230)
T 1u6g_C 96 LSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF-H 173 (1230)
T ss_dssp TCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT-H
T ss_pred cCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH-H
Confidence 455666677777777776641 111 1111 1235788888888 47788999999999887641 111111 1
Q ss_pred hhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC
Q 008257 75 RTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG 153 (572)
Q Consensus 75 ~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~ 153 (572)
..+ +.|+..|.++++.+|..|+.+|..++...+.. + -...+|.|++.|.... +...+..++.++..++...
T Consensus 174 -~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~----~~~~r~~a~~~l~~l~~~~ 245 (1230)
T 1u6g_C 174 -PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKND----SMSTTRTYIQCIAAISRQA 245 (1230)
T ss_dssp -HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTC----SSCSCTTHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCC----chhHHHHHHHHHHHHHHHh
Confidence 234 88899999999999999999999999754322 1 1245889999887642 1456778899999998753
Q ss_pred CCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcC-----
Q 008257 154 HDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA----- 228 (572)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~----- 228 (572)
.. .+ .. .-...++.++..+...+++++..++.++..++..... .++..+ ...++.++..+..
T Consensus 246 ~~--~~--~~-----~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~l--~~li~~ll~~l~~d~~~~ 312 (1230)
T 1u6g_C 246 GH--RI--GE-----YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK--EVYPHV--STIINICLKYLTYDPNYN 312 (1230)
T ss_dssp SG--GG--TT-----SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC--CCHHHH--HHHHHHHTTCCCCC----
T ss_pred HH--HH--HH-----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH--HHHHhH--HHHHHHHHHHhCCCCCCC
Confidence 21 00 00 1246899999999988999999998888877654221 111111 1123333333211
Q ss_pred --------------------------------CCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCC
Q 008257 229 --------------------------------PQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGI 276 (572)
Q Consensus 229 --------------------------------~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~ 276 (572)
...++|..|+.+|..++...+.... .+.. ..++.|+..+...+.
T Consensus 313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~-~~~~--~l~~~l~~~l~d~~~- 388 (1230)
T 1u6g_C 313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP-EFYK--TVSPALISRFKEREE- 388 (1230)
T ss_dssp --------------------------------CTTHHHHHHHHHHHHHHTTCCTTHH-HHHT--TTHHHHHSTTSCSSS-
T ss_pred CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHH-HHHH--HHHHHHHHHcCCCch-
Confidence 1125688899999888765443232 2333 478888888876664
Q ss_pred hHHHHHHHHHHhcCCCC-------------------cHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHH
Q 008257 277 SKEQAAAVGLLAELPER-------------------DLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLS 337 (572)
Q Consensus 277 ~~~~~~A~~~L~~L~~~-------------------~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~ 337 (572)
.++..++.++..+... .....+.+. ...++.+...+++ ....+++.++.
T Consensus 389 -~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~----------~~~~vr~~~~~ 456 (1230)
T 1u6g_C 389 -NVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKE----------KSVKTRQCCFN 456 (1230)
T ss_dssp -HHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTC----------SCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhcc----------CCHHHHHHHHH
Confidence 8888888776554320 000101111 1233444444543 13345667777
Q ss_pred HHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCc--HHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCcccccccc
Q 008257 338 VLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGL--DKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFS 415 (572)
Q Consensus 338 aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (572)
+|..+.... ++.... .-..++|.+.+.|.+. . ..++..++.++..+......
T Consensus 457 ~L~~l~~~~---~~~l~~-~l~~ll~~l~~~L~d~-~~~~~v~~~a~~~l~~~~~~~~~--------------------- 510 (1230)
T 1u6g_C 457 MLTELVNVL---PGALTQ-HIPVLVPGIIFSLNDK-SSSSNLKIDALSCLYVILCNHSP--------------------- 510 (1230)
T ss_dssp HHHHHHHHS---TTTTGG-GHHHHHHHHHHHTTCS-SSCHHHHHHHHHHHHHHHHSSCG---------------------
T ss_pred HHHHHHHHc---hhhhHH-HHHHHHHHHHHHHcCC-CCcchHHHHHHHHHHHHHHhCCH---------------------
Confidence 777776431 110000 0124578899999986 4 48888888888877542110
Q ss_pred CCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhc-Cc-------cchhhHHHHHhc
Q 008257 416 KQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDD-GV-------DIEQGVMVLCEA 487 (572)
Q Consensus 416 ~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~-~~-------~~~~~~~~i~~~ 487 (572)
..|.-.-...+|.|+..+.+.+..+...|+.++..++.. ++ ........
T Consensus 511 -------------------~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~---- 567 (1230)
T 1u6g_C 511 -------------------QVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKD---- 567 (1230)
T ss_dssp -------------------GGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHH----
T ss_pred -------------------HHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHH----
Confidence 001001134788999999998899988888888888732 11 11111122
Q ss_pred CChHHHHHHHh-hcCCHHHHHHHHHHHHHHHcc--hhhhh-----------hhcCC------------------------
Q 008257 488 QGIKPILDVLL-EKRTENLQRRAVWVVERILRT--DDIAY-----------EVSGD------------------------ 529 (572)
Q Consensus 488 g~i~~L~~lL~-~~~~~~~~~~a~~~l~~l~~~--~~~~~-----------~~~~~------------------------ 529 (572)
-++.+++.+. .+.+..+|..|+.++..++.. +.... .+...
T Consensus 568 -ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~ 646 (1230)
T 1u6g_C 568 -LFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRP 646 (1230)
T ss_dssp -HHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHH
T ss_pred -HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHH
Confidence 2355667672 145778999999999888744 11110 00000
Q ss_pred --CCchHHHHHHhhcCCchhHHHHHHHHHhhcccC
Q 008257 530 --PNVSTALVDAFQHADYRTRQIAERALKHIDKIP 562 (572)
Q Consensus 530 --~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~ 562 (572)
..+...|...+++.+..+|..|+.+|..+.+..
T Consensus 647 ~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~ 681 (1230)
T 1u6g_C 647 VLGEGVPILASFLRKNQRALKLGTLSALDILIKNY 681 (1230)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 011124455556677788889999998887643
No 64
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.00 E-value=8.1e-10 Score=122.39 Aligned_cols=203 Identities=11% Similarity=0.093 Sum_probs=154.9
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHH-HHhcCCCHHHHHHHHHHHHHcCCCCCh
Q 008257 172 DIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLV-QFVEAPQNDLRLASIELIQNLSPHMGH 250 (572)
Q Consensus 172 ~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~v~~~a~~~L~~Ls~~~~~ 250 (572)
..|.++++.|++++++.|..|+++|.+++.++ ..++.+...|+|.+++ .+|.+++.++|+.|+++|+||+.+.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~----~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDA----KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSH----HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCc----HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence 34677889999999999999999999999864 4677888899998765 567888899999999999999987777
Q ss_pred hHHHHHhcccCChhhHHhhhccCCC-----------Ch--------HHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHH
Q 008257 251 ELADALRGAVGQLGSLIRVISENVG-----------IS--------KEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIF 311 (572)
Q Consensus 251 ~~~~~i~~~~g~l~~Lv~lL~~~~~-----------~~--------~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv 311 (572)
++...+... |++++|..+|.+... .. ++...++.+|.+|+..+.+..+.+.+.|+++.|+
T Consensus 110 d~~~~l~~~-~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~ 188 (684)
T 4gmo_A 110 DFCVHLYRL-DVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLL 188 (684)
T ss_dssp HHHHHHHHT-THHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHc-ChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHH
Confidence 877777777 899999998864210 00 1223466778888776777778889999999999
Q ss_pred HHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhc--cCCcHHHHHHHHHHHHHhh
Q 008257 312 SRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQ--SNGLDKVQMVSATALENLS 389 (572)
Q Consensus 312 ~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~vk~~Aa~aL~~ls 389 (572)
.+|.+.. .....+...++..|..++. +|++..+.+.+.+....+..++. .. ++..+..+++.|.|+.
T Consensus 189 ~~L~~~~-------~~~~~v~~~a~~~L~~ls~---dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 189 FRLISAD-------IAPQDIYEEAISCLTTLSE---DNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHC-------CSCHHHHHHHHHHHHHHHT---TCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred HHHHhcC-------CCcHHHHHHHHHHHHHHhc---cCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence 9997532 1235678889999999996 47888888888776544333332 23 4456778899999875
Q ss_pred h
Q 008257 390 L 390 (572)
Q Consensus 390 ~ 390 (572)
.
T Consensus 258 ~ 258 (684)
T 4gmo_A 258 T 258 (684)
T ss_dssp H
T ss_pred h
Confidence 3
No 65
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.97 E-value=8.1e-08 Score=105.00 Aligned_cols=337 Identities=13% Similarity=0.182 Sum_probs=218.1
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCC
Q 008257 78 GSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFD 157 (572)
Q Consensus 78 ~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~ 157 (572)
.+..++++.+.+...++.+.-++..++..++.--.+ ++..+.+=|.++ ++-++..|..+|+++...
T Consensus 76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L----~iN~l~kDl~~~-----n~~ir~lALr~L~~i~~~----- 141 (621)
T 2vgl_A 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL----INNAIKNDLASR-----NPTFMGLALHCIANVGSR----- 141 (621)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH----HHHHHHHHHHSC-----CHHHHHHHHHHHHHHCCH-----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH----HHHHHHHhcCCC-----CHHHHHHHHHHhhccCCH-----
Confidence 388999999999999999999999988654322222 355666666653 378899999999998431
Q ss_pred ccccCCCccccchhhhHHHHHHHH--hcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHH
Q 008257 158 SITVGPDNQTLVSEDIVHNLLHLI--SNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRL 235 (572)
Q Consensus 158 ~~~~~~~~~~l~~~~~i~~Lv~lL--~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 235 (572)
. ..+..++.+.++| .+.++.++..|+-++..+...... .+...+.++.|.++|.++++.++.
T Consensus 142 ---------e-~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~------~~~~~~~~~~l~~lL~d~d~~V~~ 205 (621)
T 2vgl_A 142 ---------E-MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD------LVPMGDWTSRVVHLLNDQHLGVVT 205 (621)
T ss_dssp ---------H-HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG------GCCCCSCHHHHHHHTTCSCHHHHH
T ss_pred ---------H-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh------hcCchhHHHHHHHHhCCCCccHHH
Confidence 1 2246788889999 789999999999999988764321 111247899999999999999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHhcccCChhhHH----hhhccC-C----------CChHHHHHHHHHHhcCCCC-cHHHHH
Q 008257 236 ASIELIQNLSPHMGHELADALRGAVGQLGSLI----RVISEN-V----------GISKEQAAAVGLLAELPER-DLGLTR 299 (572)
Q Consensus 236 ~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv----~lL~~~-~----------~~~~~~~~A~~~L~~L~~~-~~~~~~ 299 (572)
+|+.+|..++.+.+.. +. ..++.++ +++..+ . ..+-.|...+.+|..++.. +++..+
T Consensus 206 ~a~~~l~~i~~~~~~~----~~---~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~ 278 (621)
T 2vgl_A 206 AATSLITTLAQKNPEE----FK---TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRG 278 (621)
T ss_dssp HHHHHHHHHHHHCHHH----HT---THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHH
T ss_pred HHHHHHHHHHHhChHH----HH---HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHH
Confidence 9999999988653321 11 2334444 443322 0 0135788888999998763 455555
Q ss_pred HHHhCCChHHHHHHHhhhccC-CCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHH
Q 008257 300 QMLDEGAFGLIFSRVKSIQLG-ETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQ 378 (572)
Q Consensus 300 ~l~~~g~l~~Lv~lL~~~~~~-~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk 378 (572)
.+.+ .++.+++.+.+.... ..+.......+.-.++.++..+. .+++..+. ++..|..+|.++ ++++|
T Consensus 279 ~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~----~~~~~~~~-----~~~~L~~~L~~~-~~nir 346 (621)
T 2vgl_A 279 RLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD----SEPNLLVR-----ACNQLGQFLQHR-ETNLR 346 (621)
T ss_dssp HHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHH-----HHHHHHHHSSCS-CHHHH
T ss_pred HHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC----CcHHHHHH-----HHHHHHHHhcCC-CcchH
Confidence 4443 334444332210000 00000012255666778887776 35655443 457788999887 89999
Q ss_pred HHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhc-CCCH
Q 008257 379 MVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLD-HTNE 457 (572)
Q Consensus 379 ~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~ 457 (572)
..|..+|..++...+.. . .+ ......++.+|+ +++.
T Consensus 347 y~aL~~l~~l~~~~~~~----------------------------------------~--~~-~~~~~~i~~~L~~d~d~ 383 (621)
T 2vgl_A 347 YLALESMCTLASSEFSH----------------------------------------E--AV-KTHIETVINALKTERDV 383 (621)
T ss_dssp HHHHHHHHHHTTCTTTH----------------------------------------H--HH-HTTHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHhccCcH----------------------------------------H--HH-HHHHHHHHHHhccCCCH
Confidence 99999998886432100 0 11 123456677777 7888
Q ss_pred hHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257 458 KVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL 517 (572)
Q Consensus 458 ~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~ 517 (572)
.++..|+..|..++.. .+...|+ ..|.+.+ ...+.+.+..++..+..++
T Consensus 384 ~Ir~~aL~lL~~l~~~-----~Nv~~Iv-----~eL~~yl-~~~d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 384 SVRQRAVDLLYAMCDR-----SNAQQIV-----AEMLSYL-ETADYSIREEIVLKVAILA 432 (621)
T ss_dssp HHHHHHHHHHHHHCCH-----HHHHHHH-----HHHHHHH-HHCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCh-----hhHHHHH-----HHHHHHH-HhcCHHHHHHHHHHHHHHH
Confidence 8888888888888743 2233333 3455666 3667777777776666554
No 66
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.97 E-value=2.7e-09 Score=118.19 Aligned_cols=216 Identities=14% Similarity=0.196 Sum_probs=149.0
Q ss_pred HcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHH-HHhcccCCHHHHHHHHHHHHHhhcCC--Cc
Q 008257 34 ENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCL-INIMKSGNMQAREAALKALNQISSCE--PS 109 (572)
Q Consensus 34 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~L-v~lL~s~~~~~~~~A~~aL~~Ls~~~--~~ 109 (572)
....|.|+++.|++++.+.|..|+.+|.+++.+...++.+...++ +++ ..+|...+.++++.|+++|+||+.+. +.
T Consensus 32 ~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 32 REDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred chhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 344677999999999999999999999999998888887776655 554 56788899999999999999999754 45
Q ss_pred HHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHH
Q 008257 110 AKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIE 189 (572)
Q Consensus 110 ~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q 189 (572)
+..+++.|++++|..+|.+.. . .+... ...... .. -.....+ .++.
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~-----~--------~~~~~---~~~~~~--~~-----~~~~~~~-----------~~~~ 157 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVL-----E--------TLTTS---EPPFSK--LL-----KAQQRLV-----------WDIT 157 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHH-----H--------HHHCB---TTBGGG--SC-----HHHHHHH-----------HHHH
T ss_pred HHHHHHcChHHHHHHHHHhhH-----H--------HHhhh---cccccc--cc-----HHHHHHH-----------HHHH
Confidence 788999999999999997531 1 11111 100000 00 0000011 2344
Q ss_pred HHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCC---HHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhH
Q 008257 190 CKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ---NDLRLASIELIQNLSPHMGHELADALRGAVGQLGSL 266 (572)
Q Consensus 190 ~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~L 266 (572)
.+++.+|++||..+. +....+...++++.|+.+|.+.+ .+++..|+.+|..++.++ .+..+.+... |....+
T Consensus 158 ~~~l~lL~~L~e~s~---~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn-~~~~~~i~~~-~~~~~~ 232 (684)
T 4gmo_A 158 GSLLVLIGLLALARD---EIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDN-LKVGQAITDD-QETHVY 232 (684)
T ss_dssp HHHHHHHHHHHHHCH---HHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHTC-CSSCHH
T ss_pred HHHHHHHHHHHhCCH---HHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccC-HHHHHHHHhc-chHHHH
Confidence 567777888886553 56677888999999999985432 579999999999999874 4555667665 433222
Q ss_pred Hhhh--ccCCCChHHHHHHHHHHhcC
Q 008257 267 IRVI--SENVGISKEQAAAVGLLAEL 290 (572)
Q Consensus 267 v~lL--~~~~~~~~~~~~A~~~L~~L 290 (572)
.-++ .+.++ ..+..++++|.|+
T Consensus 233 ~~ll~~~~~~~--~~~~la~giL~Ni 256 (684)
T 4gmo_A 233 DVLLKLATGTD--PRAVMACGVLHNV 256 (684)
T ss_dssp HHHHHHHHSSC--TTHHHHHHHHHHH
T ss_pred HHHHHHhcCCc--HHHHHHHHHHHhH
Confidence 2222 23332 4566778888875
No 67
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.39 E-value=6.8e-05 Score=83.51 Aligned_cols=275 Identities=11% Similarity=-0.016 Sum_probs=182.6
Q ss_pred HHHHHHhcc---cCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCC---CcchHHHHHHHHHHHHh
Q 008257 78 GSCLINIMK---SGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHL---PMRLKEVSATILANVVN 151 (572)
Q Consensus 78 ~~~Lv~lL~---s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~---~~~~~~~aa~~L~nla~ 151 (572)
...|-+.|. ++++.++..|+.+|.-+.....+ . ++..|...|.+.+.... ...++.-|+-.|+.+..
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~ 466 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--D-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAM 466 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--H-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--H-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhc
Confidence 377777887 67889999999999998875543 1 47788888875410000 14577778888887644
Q ss_pred cCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHh-cCCC
Q 008257 152 SGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFV-EAPQ 230 (572)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~ 230 (572)
++ ..+.+++.|..+|...+..+...++.+|..+-..+.+ .+ ++..|+..+ +..+
T Consensus 467 GS---------------~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-~~---------ai~~LL~~~~e~~~ 521 (963)
T 4ady_A 467 GS---------------ANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-PE---------AIHDMFTYSQETQH 521 (963)
T ss_dssp TC---------------CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-HH---------HHHHHHHHHHHCSC
T ss_pred CC---------------CCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-HH---------HHHHHHHHHhccCc
Confidence 32 1256789999999887776666777777655333222 12 234455544 3446
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHh--cCCCCcHHHHHHHHhCCChH
Q 008257 231 NDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLA--ELPERDLGLTRQMLDEGAFG 308 (572)
Q Consensus 231 ~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~--~L~~~~~~~~~~l~~~g~l~ 308 (572)
.++++.++..|..+..+.. ..++.+++.|....+ +.+|..|+.+++ ..-.++... |+
T Consensus 522 e~vrR~aalgLGll~~g~~-----------e~~~~li~~L~~~~d-p~vRygaa~alglAyaGTGn~~a---------Iq 580 (963)
T 4ady_A 522 GNITRGLAVGLALINYGRQ-----------ELADDLITKMLASDE-SLLRYGGAFTIALAYAGTGNNSA---------VK 580 (963)
T ss_dssp HHHHHHHHHHHHHHTTTCG-----------GGGHHHHHHHHHCSC-HHHHHHHHHHHHHHTTTSCCHHH---------HH
T ss_pred HHHHHHHHHHHHhhhCCCh-----------HHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhcCCCCHHH---------HH
Confidence 7899999999988865532 245677777775544 367777766654 333333322 34
Q ss_pred HHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHh
Q 008257 309 LIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENL 388 (572)
Q Consensus 309 ~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~l 388 (572)
.|+..+.+. .+..++..|+-+|..+..+ ++ ..+|.++++|...+++.+|..|+.||+.+
T Consensus 581 ~LL~~~~~d---------~~d~VRraAViaLGlI~~g---~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli 639 (963)
T 4ady_A 581 RLLHVAVSD---------SNDDVRRAAVIALGFVLLR---DY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIA 639 (963)
T ss_dssp HHHHHHHHC---------SCHHHHHHHHHHHHHHTSS---SC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHhccC---------CcHHHHHHHHHHHHhhccC---CH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 455555432 1345678888888877643 44 24577777665444999999999999988
Q ss_pred hhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHH
Q 008257 389 SLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALS 468 (572)
Q Consensus 389 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 468 (572)
+...+ ...+|..|..+++++++.|+..|+.+|+
T Consensus 640 ~aGn~-----------------------------------------------~~~aid~L~~L~~D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 640 CAGKG-----------------------------------------------LQSAIDVLDPLTKDPVDFVRQAAMIALS 672 (963)
T ss_dssp TSSSC-----------------------------------------------CHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred ccCCC-----------------------------------------------cHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 64322 1237788999999999999999999999
Q ss_pred Hhhhc
Q 008257 469 TVIDD 473 (572)
Q Consensus 469 ~l~~~ 473 (572)
.+...
T Consensus 673 ~Ig~g 677 (963)
T 4ady_A 673 MILIQ 677 (963)
T ss_dssp HHSTT
T ss_pred HHhcC
Confidence 98753
No 68
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.31 E-value=1.6e-07 Score=80.79 Aligned_cols=121 Identities=13% Similarity=0.092 Sum_probs=91.2
Q ss_pred cCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHH
Q 008257 35 NGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI 114 (572)
Q Consensus 35 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv 114 (572)
...++.|+..|++.+..+|..|+++|..+... .++.|+++|+++++.+|..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS---------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC---------
Confidence 45678888999998888888888888755321 24899999999999999999999998763
Q ss_pred HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHH
Q 008257 115 HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQ 194 (572)
Q Consensus 115 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~ 194 (572)
..++++|+++|.+. ++.+|..|+++|+++.. ...++.|+.+++++++.++..+++
T Consensus 72 -~~a~~~L~~~L~d~-----~~~VR~~A~~aL~~~~~-------------------~~a~~~L~~~l~d~~~~vr~~A~~ 126 (131)
T 1te4_A 72 -ERAVEPLIKLLEDD-----SGFVRSGAARSLEQIGG-------------------ERVRAAMEKLAETGTGFARKVAVN 126 (131)
T ss_dssp -HHHHHHHHHHHHHC-----CTHHHHHHHHHHHHHCS-------------------HHHHHHHHHHTTSCCTHHHHHHHH
T ss_pred -HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCc-------------------HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 23589999999754 37899999999998832 357999999999999999999998
Q ss_pred HHHHc
Q 008257 195 VLVGL 199 (572)
Q Consensus 195 aL~~l 199 (572)
+|..+
T Consensus 127 aL~~i 131 (131)
T 1te4_A 127 YLETH 131 (131)
T ss_dssp HGGGC
T ss_pred HHHhC
Confidence 87643
No 69
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.27 E-value=0.00026 Score=78.88 Aligned_cols=274 Identities=12% Similarity=-0.024 Sum_probs=169.1
Q ss_pred ChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCC--------hhHH
Q 008257 118 ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTG--------PTIE 189 (572)
Q Consensus 118 ~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~--------~~~q 189 (572)
++..|-..|.... +.++.++.-|+-.|+.+..+.. ..++..|...|.+.+ +.++
T Consensus 393 gl~~L~~yL~~~~--s~~~~ik~GAllaLGli~ag~~----------------~~~~~lL~~~L~~~~~~~~~~~~~~ir 454 (963)
T 4ady_A 393 GKKVMAPYLPGSR--ASSRFIKGGSLYGLGLIYAGFG----------------RDTTDYLKNIIVENSGTSGDEDVDVLL 454 (963)
T ss_dssp HHHHHTTTSTTSC--CSCHHHHHHHHHHHHHHTTTTT----------------HHHHHHHHHHHHHHSSCCSCHHHHHHH
T ss_pred HHHHHHHhccccC--CCcHHHHHHHHHHHHHhcCCCc----------------HHHHHHHHHHHcCccccccccccHHHH
Confidence 4555555554210 1235678888888887754321 235777888887655 5677
Q ss_pred HHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHhcccCChhhHHh
Q 008257 190 CKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHM-GHELADALRGAVGQLGSLIR 268 (572)
Q Consensus 190 ~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~-~~~~~~~i~~~~g~l~~Lv~ 268 (572)
..|+..|.-....+.+ ...+..|...+..++..+++.|+.+|..+--+. +.++ +..|+.
T Consensus 455 ~gAaLGLGla~~GS~~----------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~a----------i~~LL~ 514 (963)
T 4ady_A 455 HGASLGIGLAAMGSAN----------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEA----------IHDMFT 514 (963)
T ss_dssp HHHHHHHHHHSTTCCC----------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHH----------HHHHHH
T ss_pred HHHHHHHHHHhcCCCC----------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHH----------HHHHHH
Confidence 7777777765544432 124667788888777777778888877653222 2232 334444
Q ss_pred hhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCC
Q 008257 269 VISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSD 348 (572)
Q Consensus 269 lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~ 348 (572)
.+.+... ..++..++..|+.+..+++ ..++.++..|... .++-++..++-++.....+. .
T Consensus 515 ~~~e~~~-e~vrR~aalgLGll~~g~~---------e~~~~li~~L~~~---------~dp~vRygaa~alglAyaGT-G 574 (963)
T 4ady_A 515 YSQETQH-GNITRGLAVGLALINYGRQ---------ELADDLITKMLAS---------DESLLRYGGAFTIALAYAGT-G 574 (963)
T ss_dssp HHHHCSC-HHHHHHHHHHHHHHTTTCG---------GGGHHHHHHHHHC---------SCHHHHHHHHHHHHHHTTTS-C
T ss_pred HHhccCc-HHHHHHHHHHHHhhhCCCh---------HHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHhcCC-C
Confidence 4433332 3777777777777655443 3457777788752 23445556655554222211 3
Q ss_pred ChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCcccccccccc
Q 008257 349 EPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHR 428 (572)
Q Consensus 349 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 428 (572)
|+.. |..|++.+.+..++.+|+.|+.+|+.+....
T Consensus 575 n~~a---------Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~------------------------------------ 609 (963)
T 4ady_A 575 NNSA---------VKRLLHVAVSDSNDDVRRAAVIALGFVLLRD------------------------------------ 609 (963)
T ss_dssp CHHH---------HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS------------------------------------
T ss_pred CHHH---------HHHHHHHhccCCcHHHHHHHHHHHHhhccCC------------------------------------
Confidence 5543 3333444443337889999999998764321
Q ss_pred CccCccchhhhhhccchHHHHHhh-cCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHH
Q 008257 429 GLCSLKETFCLLEGHAVEKLIALL-DHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQR 507 (572)
Q Consensus 429 ~~~~~~~~~~l~~~g~i~~Lv~lL-~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~ 507 (572)
...++.++++| ++.++.|+..|..||+.+..... ... ++..|..++ ...++.++.
T Consensus 610 -------------~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~-----~~~-----aid~L~~L~-~D~d~~Vrq 665 (963)
T 4ady_A 610 -------------YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG-----LQS-----AIDVLDPLT-KDPVDFVRQ 665 (963)
T ss_dssp -------------CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC-----CHH-----HHHHHHHHH-TCSSHHHHH
T ss_pred -------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC-----cHH-----HHHHHHHHc-cCCCHHHHH
Confidence 12567777754 67899999999999999875322 111 345666777 588999999
Q ss_pred HHHHHHHHHHc
Q 008257 508 RAVWVVERILR 518 (572)
Q Consensus 508 ~a~~~l~~l~~ 518 (572)
.|+.+|..+..
T Consensus 666 ~Ai~ALG~Ig~ 676 (963)
T 4ady_A 666 AAMIALSMILI 676 (963)
T ss_dssp HHHHHHHHHST
T ss_pred HHHHHHHHHhc
Confidence 99999998873
No 70
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.27 E-value=0.0006 Score=69.93 Aligned_cols=350 Identities=13% Similarity=0.126 Sum_probs=196.9
Q ss_pred hHHHHHHhccc-CCHHHHHHHHHHHHHhhcCCC---cHHHHH-HcCChHH-HHHHHhccCCCCCCcchHHHHHHHHHHHH
Q 008257 77 VGSCLINIMKS-GNMQAREAALKALNQISSCEP---SAKVLI-HAGILPP-LVKDLFTVGSNHLPMRLKEVSATILANVV 150 (572)
Q Consensus 77 g~~~Lv~lL~s-~~~~~~~~A~~aL~~Ls~~~~---~~~~iv-~~G~i~~-Lv~lL~s~~~~~~~~~~~~~aa~~L~nla 150 (572)
++..++++|+. .+.+.....+..+..|..+++ .+..+. +..-.+. +....... .+.-....+..++..++
T Consensus 78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~----dd~~~ll~a~~l~~ll~ 153 (480)
T 1ho8_A 78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKG----DFQTVLISGFNVVSLLV 153 (480)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCS----SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcc----cchHHHHHHHHHHHHHh
Confidence 34889999985 677888999999999888766 333332 3322221 22222111 12333344444445554
Q ss_pred hcCCCCCccccCCCccccchhhhHHH------HHHHHhc-CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCC--hHH
Q 008257 151 NSGHDFDSITVGPDNQTLVSEDIVHN------LLHLISN-TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGA--TIS 221 (572)
Q Consensus 151 ~~~~~~~~~~~~~~~~~l~~~~~i~~------Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~--i~~ 221 (572)
.... .....++. ++..|.. ++.+.+.-++++|..|...+ +.|..+.+.++ +++
T Consensus 154 ~~~~--------------~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~----~~R~~f~~~~~~~~~~ 215 (480)
T 1ho8_A 154 QNGL--------------HNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIP----EYRDVIWLHEKKFMPT 215 (480)
T ss_dssp STTT--------------CCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSH----HHHHHHHTTHHHHHHH
T ss_pred ccCC--------------ccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcch----hHHHHHHHcccchhHH
Confidence 3211 11233333 4444554 34566777888888888764 56877776654 666
Q ss_pred HHHHhcC---------------C--CHHHHHHHHHHHHHcCCCCChhHHHHHhcccCCh--hhHHhhhccCCCChHHHHH
Q 008257 222 LVQFVEA---------------P--QNDLRLASIELIQNLSPHMGHELADALRGAVGQL--GSLIRVISENVGISKEQAA 282 (572)
Q Consensus 222 Lv~lL~~---------------~--~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l--~~Lv~lL~~~~~~~~~~~~ 282 (572)
++.+++. + ...++=+++-+++.|+-. .++.+.+... +.. +.|+++++.... +++-..
T Consensus 216 l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~--~~~~~~l~~~-~i~~~~~L~~i~k~s~K-EKvvRv 291 (480)
T 1ho8_A 216 LFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFN--PVFANELVQK-YLSDFLDLLKLVKITIK-EKVSRL 291 (480)
T ss_dssp HHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTS--HHHHHHHHTT-SHHHHHHHHHHHHHCCS-HHHHHH
T ss_pred HHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcC--HHHHHHHHhc-chHHHHHHHHHHHhhcc-chhHHH
Confidence 6654431 1 134566778888888865 3455667654 432 577777876552 578888
Q ss_pred HHHHHhcCCCCcH----HH-HHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHH
Q 008257 283 AVGLLAELPERDL----GL-TRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCC 357 (572)
Q Consensus 283 A~~~L~~L~~~~~----~~-~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~ 357 (572)
++.++.||...++ .. .+.++..++ +++++.|+..+- .++++.+..-...-.+ .+
T Consensus 292 ~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~-------~Dedl~edl~~L~e~L----------~~--- 350 (480)
T 1ho8_A 292 CISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKY-------SDEELRQDISNLKEIL----------EN--- 350 (480)
T ss_dssp HHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCC-------SSHHHHHHHHHHHHHH----------HH---
T ss_pred HHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCC-------CcHHHHHHHHHHHHHH----------HH---
Confidence 9999999987542 22 223444444 556666664221 1333333211100000 00
Q ss_pred HcCchHHHHHHhccCCcHHHHHHHHHHH-HHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccch
Q 008257 358 EHNLAALFIELLQSNGLDKVQMVSATAL-ENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKET 436 (572)
Q Consensus 358 ~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL-~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 436 (572)
-++-|.+ . -++.+... +.|.+ .+++. ..-||.-- .-+. .++.
T Consensus 351 -------~~~~lts---f--DeY~~El~sG~L~W-----------SP~H~-se~FW~EN-------a~kf------~e~~ 393 (480)
T 1ho8_A 351 -------EYQELTS---F--DEYVAELDSKLLCW-----------SPPHV-DNGFWSDN-------IDEF------KKDN 393 (480)
T ss_dssp -------HHHTCCH---H--HHHHHHHHHTCCCC-----------CGGGG-CHHHHHHH-------SGGG------SSGG
T ss_pred -------HHHhccc---H--HHHHHHHhcCCccc-----------CCCcc-chhHHHHH-------HHHH------Hhcc
Confidence 0111111 1 11111111 11111 11110 00111000 0000 1233
Q ss_pred hhhhhccchHHHHHhhcC----------CCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHH
Q 008257 437 FCLLEGHAVEKLIALLDH----------TNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQ 506 (572)
Q Consensus 437 ~~l~~~g~i~~Lv~lL~~----------~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~ 506 (572)
|. .+..|+++|.+ .++.+...|+.=++.++.+.+ .+...+.+.||-..+.+++ +|+|++++
T Consensus 394 ~~-----llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P---~gr~i~~~lg~K~~VM~Lm-~h~d~~Vr 464 (480)
T 1ho8_A 394 YK-----IFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLP---ESIDVLDKTGGKADIMELL-NHSDSRVK 464 (480)
T ss_dssp GH-----HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCT---THHHHHHHHSHHHHHHHHT-SCSSHHHH
T ss_pred hH-----HHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCc---chhHHHHHcCcHHHHHHHh-cCCCHHHH
Confidence 33 67899999973 478889999999999998765 6778888999988899999 69999999
Q ss_pred HHHHHHHHHHHcc
Q 008257 507 RRAVWVVERILRT 519 (572)
Q Consensus 507 ~~a~~~l~~l~~~ 519 (572)
..|..+++++..+
T Consensus 465 ~~AL~avQklm~~ 477 (480)
T 1ho8_A 465 YEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998743
No 71
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.25 E-value=1.2e-07 Score=81.42 Aligned_cols=118 Identities=16% Similarity=0.196 Sum_probs=92.0
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCC
Q 008257 78 GSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFD 157 (572)
Q Consensus 78 ~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~ 157 (572)
.+.|+.+|+++++.+|..|+++|.++... .++.|+++|.+. ++.+|..|+++|+++..
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-----------~~~~L~~~L~d~-----~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGDE-----------AFEPLLESLSNE-----DWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSST-----------THHHHHHGGGCS-----CHHHHHHHHHHHGGGCS------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCch-----------HHHHHHHHHcCC-----CHHHHHHHHHHHHhcCC------
Confidence 38899999999999999999988875421 379999999753 38999999999988732
Q ss_pred ccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHH
Q 008257 158 SITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLAS 237 (572)
Q Consensus 158 ~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a 237 (572)
...++.|+.+|.++++.++..++++|..+.. ..+++.|+.+++++++.+|..|
T Consensus 72 -------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------------~~a~~~L~~~l~d~~~~vr~~A 124 (131)
T 1te4_A 72 -------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------------ERVRAAMEKLAETGTGFARKVA 124 (131)
T ss_dssp -------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------------HHHHHHHHHHTTSCCTHHHHHH
T ss_pred -------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------HHHHHHHHHHHhCCCHHHHHHH
Confidence 3579999999999999999999999987752 2358899999998899999999
Q ss_pred HHHHHHc
Q 008257 238 IELIQNL 244 (572)
Q Consensus 238 ~~~L~~L 244 (572)
+++|..+
T Consensus 125 ~~aL~~i 131 (131)
T 1te4_A 125 VNYLETH 131 (131)
T ss_dssp HHHGGGC
T ss_pred HHHHHhC
Confidence 9988653
No 72
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.23 E-value=4.5e-05 Score=69.95 Aligned_cols=184 Identities=14% Similarity=0.148 Sum_probs=142.7
Q ss_pred CCcHHHHHHHccCCHHHHHHHHHHHHHhcc--CcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCc-HHH
Q 008257 36 GRLQPLLTQILEGPQETKLSLAAFLGDLAL--NSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPS-AKV 112 (572)
Q Consensus 36 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~--~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~-~~~ 112 (572)
+.+..|..+|.+.+..++.++..+|..+-. ++..+..+.+...+.+|+++++.+..+...|++||..|-.+.+- .+.
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 467788899999999999999999999876 35556667777779999999999999999999999999976432 322
Q ss_pred HHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHH
Q 008257 113 LIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKL 192 (572)
Q Consensus 113 iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a 192 (572)
... .+..|..++.+++ .-++++|+..|+.+ +-. -....++..+.+++.|.++++|.-+
T Consensus 113 y~K--l~~aL~dlik~~~-----~il~~eaae~Lgkl-kv~--------------~~~~~V~~~l~sLl~Skd~~vK~ag 170 (265)
T 3b2a_A 113 FLK--AAKTLVSLLESPD-----DMMRIETIDVLSKL-QPL--------------EDSKLVRTYINELVVSPDLYTKVAG 170 (265)
T ss_dssp HHH--HHHHHHHHTTSCC-----HHHHHHHHHHHHHC-CBS--------------CCCHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHH--HHHHHHHHhcCCC-----chHHHHHHHHhCcC-Ccc--------------cchHHHHHHHHHHHhCCChhHHHHH
Confidence 222 3456788887653 78999999999998 211 1235788899999999999999999
Q ss_pred HHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 008257 193 LQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH 247 (572)
Q Consensus 193 ~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~ 247 (572)
+++|.+++..+... ++. ...+.-+-.+|+++|+.+++.|+.+|..+...
T Consensus 171 l~~L~eia~~S~D~-~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 171 FCLFLNMLNSSADS-GHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHHHHGGGCSSC-CCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhhcccCCH-HHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 99999998865321 111 23344455788999999999999998888744
No 73
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.21 E-value=9.4e-06 Score=77.46 Aligned_cols=187 Identities=14% Similarity=0.127 Sum_probs=134.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhccC-cchh-HHHHhhhH-HHHHHhcc-cCCHHHHHHHHHHHHHhhcCCCcHHHHH
Q 008257 39 QPLLTQILEGPQETKLSLAAFLGDLALN-SDVK-VLVARTVG-SCLINIMK-SGNMQAREAALKALNQISSCEPSAKVLI 114 (572)
Q Consensus 39 ~~Lv~~L~~~~~~~~~~aa~~L~~l~~~-~~~k-~~i~~~g~-~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~~~~~~~iv 114 (572)
+.+.+.+.+.+...|..++..|..+... ++.. ..+ ..+ +.|...|. ..+..++..|+.+|..|+..-...-.-.
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3477888999999999999999887653 2211 111 134 88889994 8899999999999999995321110111
Q ss_pred HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHH
Q 008257 115 HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQ 194 (572)
Q Consensus 115 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~ 194 (572)
-.-.+|+|+..+... ...+|+.|..+|.+++... .-..+++.+...|++.++.++..++.
T Consensus 96 ~~~ilp~ll~~l~d~-----~~~vr~~a~~aL~~~~~~~---------------~~~~ll~~l~~~l~~~~~~vr~~~l~ 155 (242)
T 2qk2_A 96 ASACVPSLLEKFKEK-----KPNVVTALREAIDAIYAST---------------SLEAQQESIVESLSNKNPSVKSETAL 155 (242)
T ss_dssp HHHHHHHHHHGGGCC-----CHHHHHHHHHHHHHHHTTS---------------CHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 234788888888754 3789999999999998632 12457899999999999999999999
Q ss_pred HHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 008257 195 VLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMG 249 (572)
Q Consensus 195 aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~ 249 (572)
.|..+.............+ ...+|.|+.+|.+.++++|..|..++..++..-+
T Consensus 156 ~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 156 FIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 9998644321100011121 2468999999999999999999999988875433
No 74
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.20 E-value=5.7e-05 Score=69.28 Aligned_cols=176 Identities=16% Similarity=0.146 Sum_probs=136.4
Q ss_pred CCCCCHHHHHHHHHHHHhhccC--cchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcc-hhHHHHhhhHHH
Q 008257 4 SKSENLLTVEKAEKTLANLEKC--ENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSD-VKVLVARTVGSC 80 (572)
Q Consensus 4 ~~s~~~~~~~~A~~~L~~L~~~--~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~-~k~~i~~~g~~~ 80 (572)
++.+|+.++..|..+|..+-+. +.-+....+. .++.+++++++.+..+...|..+|..+-.+.+ ...... .-+..
T Consensus 42 L~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~-~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~-Kl~~a 119 (265)
T 3b2a_A 42 AGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFL-KAAKT 119 (265)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHH-HHHHH
T ss_pred HhccchHHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHH-HHHHH
Confidence 5778999999999999998773 3334444444 78999999999999999999999998765322 222222 22488
Q ss_pred HHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccc
Q 008257 81 LINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSIT 160 (572)
Q Consensus 81 Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~ 160 (572)
|.+++.++++-.++.|+..|..|..-...+ +.+..+.+++.|. +..+|..+..+|.|++..+.+..
T Consensus 120 L~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Sk-----d~~vK~agl~~L~eia~~S~D~~--- 185 (265)
T 3b2a_A 120 LVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSP-----DLYTKVAGFCLFLNMLNSSADSG--- 185 (265)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCS-----SHHHHHHHHHHHHHHGGGCSSCC---
T ss_pred HHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCC-----ChhHHHHHHHHHHHhhcccCCHH---
Confidence 999999999999999999999995444343 3456788888664 38999999999999998665432
Q ss_pred cCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCC
Q 008257 161 VGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSP 203 (572)
Q Consensus 161 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~ 203 (572)
.-++++..+-.+|++.++.+++.|+.+|..+.+.+
T Consensus 186 --------i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 186 --------HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp --------CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred --------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 22456677788999999999999999999988875
No 75
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.15 E-value=3.5e-05 Score=77.18 Aligned_cols=281 Identities=13% Similarity=0.069 Sum_probs=154.8
Q ss_pred ChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHH
Q 008257 118 ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLV 197 (572)
Q Consensus 118 ~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~ 197 (572)
..+..++++.+. +..+|.-.=-.+.+++... +..+ =++..|.+=+.++++.++..|+|+|+
T Consensus 69 lf~~v~kl~~s~-----d~~lKrLvYLyl~~~~~~~---~e~i-----------Lv~Nsl~kDl~~~N~~iR~lALRtL~ 129 (355)
T 3tjz_B 69 AFFAMTKLFQSN-----DPTLRRMCYLTIKEMSCIA---EDVI-----------IVTSSLTKDMTGKEDSYRGPAVRALC 129 (355)
T ss_dssp HHHHHHGGGGCC-----CHHHHHHHHHHHHHHTTTS---SCGG-----------GGHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-----CHHHHHHHHHHHHHhCCCH---HHHH-----------HHHHHHHhhcCCCcHhHHHHHHHHHh
Confidence 345556677664 2778887777777776642 1111 25778888889999999999999999
Q ss_pred HccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCCh
Q 008257 198 GLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGIS 277 (572)
Q Consensus 198 ~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~ 277 (572)
++....- .+ ...+++-..|.++++.||..|+-+...|....+ ++ + + +.+..+-+++.+.+.
T Consensus 130 ~I~~~~m-----~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-e~---v-~--~~~~~l~~ll~d~n~-- 190 (355)
T 3tjz_B 130 QITDSTM-----LQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-DV---V-K--RWVNEAQEAASSDNI-- 190 (355)
T ss_dssp HHCCTTT-----HH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-HH---H-H--TTHHHHHHHTTCSSH--
T ss_pred cCCCHHH-----HH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-HH---H-H--HHHHHHHHHhcCCCc--
Confidence 9987642 11 245677888899999999999999888886643 32 2 2 578889999988775
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCC-hHHHHHH
Q 008257 278 KEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDE-PDAIALC 356 (572)
Q Consensus 278 ~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~-~~~~~~i 356 (572)
-++..|+++|..+...+.. ++..|+.-+.. +.. ..++.+-..+..+..+.. .| ++
T Consensus 191 ~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~---~~l----~~~~~q~~llr~l~~~~~---~d~~~----- 246 (355)
T 3tjz_B 191 MVQYHALGLLYHVRKNDRL---------AVSKMISKFTR---HGL----KSPFAYCMMIRVASRQLE---DEDGS----- 246 (355)
T ss_dssp HHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHS---SCC----SCHHHHHHHHHHHTCC---------------
T ss_pred cHHHHHHHHHHHHHhhchH---------HHHHHHHHHhc---CCC----cChHHHHHHHHHHHHhcc---ccchh-----
Confidence 7788999999888765432 23445555433 111 134433334443333332 13 22
Q ss_pred HHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccch
Q 008257 357 CEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKET 436 (572)
Q Consensus 357 ~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 436 (572)
.....++.|...|++. ++-|..+|+.++..+...+..
T Consensus 247 ~~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~------------------------------------------ 283 (355)
T 3tjz_B 247 RDSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK------------------------------------------ 283 (355)
T ss_dssp ----------CCCCCS-SHHHHHHHHHHHTC-------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH------------------------------------------
Confidence 2235667788888888 889999999999876431110
Q ss_pred hhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHH
Q 008257 437 FCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVER 515 (572)
Q Consensus 437 ~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~ 515 (572)
.-..++.+|..+|.++++.++-.|++.|..++...+ ..+..+. .-+.+++ .++|..+...|...|.+
T Consensus 284 ---~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P------~~v~~~n--~~ie~li-~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 284 ---ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP------SAVTACN--LDLENLV-TDANRSIATLAITTLLK 350 (355)
T ss_dssp -------CCCTHHHHHHSSSSSSHHHHHHCC------------------------------------------------
T ss_pred ---HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc------HHHHHHH--HHHHHHc-cCCcHhHHHHHHHHhhh
Confidence 012367788899999999999999999999986433 2333332 3366778 58888887777666543
No 76
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.05 E-value=0.00027 Score=62.12 Aligned_cols=216 Identities=10% Similarity=0.125 Sum_probs=157.2
Q ss_pred HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHh-cCChhHHHHHH
Q 008257 115 HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS-NTGPTIECKLL 193 (572)
Q Consensus 115 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~-~~~~~~q~~a~ 193 (572)
+...+..++++|+.. . -.++.+|..++.+++..-++ ..+..+..|+-+++ +...+..+..+
T Consensus 30 d~~~l~~lI~~LDDD----l-wtV~kNAl~vi~~i~~~~~e-------------l~epl~~kL~vm~~ksEaIpltqeIa 91 (253)
T 2db0_A 30 DESVLKKLIELLDDD----L-WTVVKNAISIIMVIAKTRED-------------LYEPMLKKLFSLLKKSEAIPLTQEIA 91 (253)
T ss_dssp CHHHHHHHHHHTTCS----C-HHHHHHHHHHHHHHHTTCGG-------------GHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred hHHHHHHHHHHhccH----H-HHHHHhHHHHHHHHHHHhHH-------------HHHHHHHHHHHHHhhcccCchHHHHH
Confidence 566788889999641 2 36899999999999863211 12345666666665 66777777788
Q ss_pred HHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccC
Q 008257 194 QVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISEN 273 (572)
Q Consensus 194 ~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~ 273 (572)
+++..++.... +.+ .+.+|.|..-.+-+++.++.+-..+|..+++.++.-. . +.+.-+..+|+++
T Consensus 92 ~a~G~la~i~P--e~v------~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~----~---~v~rdi~smltsk 156 (253)
T 2db0_A 92 KAFGQMAKEKP--ELV------KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM----A---SIVRDFMSMLSSK 156 (253)
T ss_dssp HHHHHHHHHCH--HHH------HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH----H---HHHHHHHHHTSCS
T ss_pred HHHhHHHHhCH--HHH------HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH----H---HHHHHHHHHhcCC
Confidence 88888876432 122 2467888888888999999999999999987754322 1 3456678889988
Q ss_pred CCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHH
Q 008257 274 VGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAI 353 (572)
Q Consensus 274 ~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~ 353 (572)
+. ..+..|+..|+.+....... +. -.+|.|..+|.+ .++-++..++.+|.+++.. +|..|
T Consensus 157 d~--~Dkl~aLnFi~alGen~~~y---v~--PfLprL~aLL~D----------~deiVRaSaVEtL~~lA~~---npklR 216 (253)
T 2db0_A 157 NR--EDKLTALNFIEAMGENSFKY---VN--PFLPRIINLLHD----------GDEIVRASAVEALVHLATL---NDKLR 216 (253)
T ss_dssp SH--HHHHHHHHHHHTCCTTTHHH---HG--GGHHHHHGGGGC----------SSHHHHHHHHHHHHHHHTS---CHHHH
T ss_pred Ch--HHHHHHHHHHHHHhccCccc---cC--cchHHHHHHHcC----------cchhhhHHHHHHHHHHHHc---CHHHH
Confidence 85 78889999999886644443 32 468999999986 2566788899999999975 89988
Q ss_pred HHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhh
Q 008257 354 ALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSL 390 (572)
Q Consensus 354 ~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~ 390 (572)
+.+.+ -++=+++. ++.++...-.+|..+..
T Consensus 217 kii~~------kl~e~~D~-S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 217 KVVIK------RLEELNDT-SSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHH------HHHHCCCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHH------HHHHhcCc-HHHHHHHHHHHHHHHHH
Confidence 87533 35566777 88999999999887753
No 77
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.99 E-value=0.0012 Score=58.11 Aligned_cols=220 Identities=13% Similarity=0.208 Sum_probs=155.4
Q ss_pred CChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHH
Q 008257 261 GQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLA 340 (572)
Q Consensus 261 g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~ 340 (572)
..+..++++|+.+- | .++..|+.++..+...-++....+ +..|+.+++.+ +..++....+.++.
T Consensus 32 ~~l~~lI~~LDDDl-w-tV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ks---------EaIpltqeIa~a~G 95 (253)
T 2db0_A 32 SVLKKLIELLDDDL-W-TVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKS---------EAIPLTQEIAKAFG 95 (253)
T ss_dssp HHHHHHHHHTTCSC-H-HHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHC---------CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHH-H-HHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhc---------ccCchHHHHHHHHh
Confidence 46788888888766 4 789999999999988666665544 34566666642 22333334555565
Q ss_pred HHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCcc
Q 008257 341 RVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVI 420 (572)
Q Consensus 341 ~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (572)
.++.- +|+..+. .+|.+..-++-+ ++++|.+-+.+|..++...+.+
T Consensus 96 ~la~i---~Pe~v~~-----vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l------------------------- 141 (253)
T 2db0_A 96 QMAKE---KPELVKS-----MIPVLFANYRIG-DEKTKINVSYALEEIAKANPML------------------------- 141 (253)
T ss_dssp HHHHH---CHHHHHH-----HHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHH-------------------------
T ss_pred HHHHh---CHHHHHh-----hHHHHHHHHhcC-CccceecHHHHHHHHHHhChHH-------------------------
Confidence 55542 7776553 478888888888 9999999999999998754321
Q ss_pred ccccccccCccCccchhhhhhccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhc
Q 008257 421 TGLCRLHRGLCSLKETFCLLEGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEK 500 (572)
Q Consensus 421 ~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~ 500 (572)
-.+.+.-+..+|.++|..-+..|+..++-+..++. ..+.- -+|.|..+| ..
T Consensus 142 --------------------~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~------~yv~P--fLprL~aLL-~D 192 (253)
T 2db0_A 142 --------------------MASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF------KYVNP--FLPRIINLL-HD 192 (253)
T ss_dssp --------------------HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH------HHHGG--GHHHHHGGG-GC
T ss_pred --------------------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc------cccCc--chHHHHHHH-cC
Confidence 12466778899999998888888888887765432 23322 367888999 58
Q ss_pred CCHHHHHHHHHHHHHHHcc-hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcccCCCCC
Q 008257 501 RTENLQRRAVWVVERILRT-DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIPNFSG 566 (572)
Q Consensus 501 ~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~s~ 566 (572)
+|+-++..|+.+|.++... +..|.-+ ..-++-+.+.+..++.++..+|..|......|+
T Consensus 193 ~deiVRaSaVEtL~~lA~~npklRkii-------~~kl~e~~D~S~lv~~~V~egL~rl~l~e~~~~ 252 (253)
T 2db0_A 193 GDEIVRASAVEALVHLATLNDKLRKVV-------IKRLEELNDTSSLVNKTVKEGISRLLLLEGHSS 252 (253)
T ss_dssp SSHHHHHHHHHHHHHHHTSCHHHHHHH-------HHHHHHCCCSCHHHHHHHHHHHHHHHHC-----
T ss_pred cchhhhHHHHHHHHHHHHcCHHHHHHH-------HHHHHHhcCcHHHHHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999854 4433222 235566778889999999999999987766553
No 78
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.98 E-value=0.00021 Score=71.54 Aligned_cols=256 Identities=10% Similarity=0.032 Sum_probs=153.3
Q ss_pred CCCCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHH
Q 008257 4 SKSENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLIN 83 (572)
Q Consensus 4 ~~s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~ 83 (572)
.+|+|....+-.--.+.+++..++-.. + ++..|.+=++++++-.|-.|.++|+++...+- .+.-.+++-+
T Consensus 77 ~~s~d~~lKrLvYLyl~~~~~~~~e~i-L----v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m-----~~~l~~~lk~ 146 (355)
T 3tjz_B 77 FQSNDPTLRRMCYLTIKEMSCIAEDVI-I----VTSSLTKDMTGKEDSYRGPAVRALCQITDSTM-----LQAIERYMKQ 146 (355)
T ss_dssp GGCCCHHHHHHHHHHHHHHTTTSSCGG-G----GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT-----HHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHhCCCHHHHH-H----HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH-----HHHHHHHHHH
Confidence 467777777766666666666422211 2 35677888899999999999999998866431 2222288999
Q ss_pred hcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCC
Q 008257 84 IMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGP 163 (572)
Q Consensus 84 lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~ 163 (572)
.|.+.++.++..|+-+..+|....+ + +++ +.++.+-+++.+. ++.++..|..+|..+..++
T Consensus 147 ~L~d~~pyVRk~A~l~~~kL~~~~p--e-~v~-~~~~~l~~ll~d~-----n~~V~~~Al~lL~ei~~~d---------- 207 (355)
T 3tjz_B 147 AIVDKVPSVSSSALVSSLHLLKCSF--D-VVK-RWVNEAQEAASSD-----NIMVQYHALGLLYHVRKND---------- 207 (355)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTTTCH--H-HHH-TTHHHHHHHTTCS-----SHHHHHHHHHHHHHHHTTC----------
T ss_pred HcCCCCHHHHHHHHHHHHHHhccCH--H-HHH-HHHHHHHHHhcCC-----CccHHHHHHHHHHHHHhhc----------
Confidence 9999999999999999999875433 2 343 7899999999754 3778889999999987532
Q ss_pred CccccchhhhHHHHHHHHhcC---ChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHH
Q 008257 164 DNQTLVSEDIVHNLLHLISNT---GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIEL 240 (572)
Q Consensus 164 ~~~~l~~~~~i~~Lv~lL~~~---~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~ 240 (572)
...+..|+..+... ++-.|...++.+..++..... .. ....++.|..+|++.++.|.-.|+++
T Consensus 208 -------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~--~~-----~~~~~~~l~~~L~~~~~aVvyEa~k~ 273 (355)
T 3tjz_B 208 -------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG--SR-----DSPLFDFIESCLRNKHEMVVYEAASA 273 (355)
T ss_dssp -------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------------------------CCCCCSSHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch--hh-----HHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 12466677666553 466777778877666654311 11 23466778888899999999999999
Q ss_pred HHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhh
Q 008257 241 IQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKS 316 (572)
Q Consensus 241 L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~ 316 (572)
+-.+..... .+.. .++..|..+|.++++ .+|..|+..|..+....++..+ ..-.-+.+++.+
T Consensus 274 I~~l~~~~~-----~~~~--~a~~~L~~fLss~d~--niryvaLr~L~~l~~~~P~~v~-----~~n~~ie~li~d 335 (355)
T 3tjz_B 274 IVNLPGCSA-----KELA--PAVSVLQLFCSSPKA--ALRYAAVRTLNKVAMKHPSAVT-----ACNLDLENLVTD 335 (355)
T ss_dssp HTC------------------CCCTHHHHHHSSSS--SSHHHHHHCC-----------------------------
T ss_pred HHhccCCCH-----HHHH--HHHHHHHHHHcCCCc--hHHHHHHHHHHHHHHHCcHHHH-----HHHHHHHHHccC
Confidence 988865221 1222 467888889988886 7899999998888776555432 123345555655
No 79
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.90 E-value=4.2e-05 Score=72.84 Aligned_cols=184 Identities=13% Similarity=0.127 Sum_probs=132.3
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcC-CCcHHHHHHcCChHHHHHHHh-ccCCCCCCcchHHHHHHHHHHHHhcCCCC
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSC-EPSAKVLIHAGILPPLVKDLF-TVGSNHLPMRLKEVSATILANVVNSGHDF 156 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~-~~~~~~iv~~G~i~~Lv~lL~-s~~~~~~~~~~~~~aa~~L~nla~~~~~~ 156 (572)
+.+.+.+.+.+-..|..|+..|..+... +.....-. ...++.|..+|. .. ...++..|+.+|+.|+..-..
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~-----~~~V~~~a~~~l~~la~~l~~- 90 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDS-----NVVLVAMAGKCLALLAKGLAK- 90 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCS-----CHHHHHHHHHHHHHHHHHHGG-
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCC-----CHHHHHHHHHHHHHHHHHHhh-
Confidence 5688899999999999999999999864 32110000 134667777773 43 378999999999999863210
Q ss_pred CccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHH
Q 008257 157 DSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLA 236 (572)
Q Consensus 157 ~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 236 (572)
.+ .-....++|.++..+.+..+.++..+..+|..+..... .. ..++.|...++++++.+|..
T Consensus 91 -~~-------~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~------~ll~~l~~~l~~~~~~vr~~ 152 (242)
T 2qk2_A 91 -RF-------SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LE------AQQESIVESLSNKNPSVKSE 152 (242)
T ss_dssp -GG-------HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HH------HHHHHHHHHTTCSCHHHHHH
T ss_pred -hH-------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HH------HHHHHHHHHHcCCChHHHHH
Confidence 00 01235588999999999999999999999998877542 11 24677888999999999999
Q ss_pred HHHHHHHcC-CCCChh-HHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCC
Q 008257 237 SIELIQNLS-PHMGHE-LADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPE 292 (572)
Q Consensus 237 a~~~L~~Ls-~~~~~~-~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~ 292 (572)
++..|..+. ...+.. ....+. ..+|.|+.+|..++. ++|..|..+++.+..
T Consensus 153 ~l~~l~~~l~~~~~~~~~~~~l~---~l~p~l~~~l~D~~~--~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 153 TALFIARALTRTQPTALNKKLLK---LLTTSLVKTLNEPDP--TVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHHHHHTTCCGGGCCHHHHH---HHHHHHHHHHTSSCH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCccHHHHH---HHHHHHHHHhcCCCh--HHHHHHHHHHHHHHH
Confidence 999999954 432221 122333 368899999987774 899999998877643
No 80
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.0003 Score=67.27 Aligned_cols=190 Identities=14% Similarity=0.123 Sum_probs=132.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHH-hccC-cchhHHHHh-hhH-HHHHHhc-ccCCHHHHHHHHHHHHHhhcCC---CcH-H
Q 008257 41 LLTQILEGPQETKLSLAAFLGD-LALN-SDVKVLVAR-TVG-SCLINIM-KSGNMQAREAALKALNQISSCE---PSA-K 111 (572)
Q Consensus 41 Lv~~L~~~~~~~~~~aa~~L~~-l~~~-~~~k~~i~~-~g~-~~Lv~lL-~s~~~~~~~~A~~aL~~Ls~~~---~~~-~ 111 (572)
+-..+.+.++..|..|...|.. +... .+....-.. ..+ ..|.+.| +..+..++..|+.+|..|+..- ... .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4567788999999999999998 7532 111100011 133 7788888 6788999999999999999532 211 2
Q ss_pred HHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHH
Q 008257 112 VLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECK 191 (572)
Q Consensus 112 ~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~ 191 (572)
.. .-.+|+++..+... ...+++.+..+|-.++.+.+.... .-.-+.+++.|+..|++..+.+|..
T Consensus 101 y~--~~llp~ll~~l~dk-----k~~V~~aa~~al~~i~~~~~~~~~--------~~~l~~ll~~l~~~l~~k~~~vk~~ 165 (249)
T 2qk1_A 101 YV--SLVFTPLLDRTKEK-----KPSVIEAIRKALLTICKYYDPLAS--------SGRNEDMLKDILEHMKHKTPQIRME 165 (249)
T ss_dssp HH--HHHHHHHHHGGGCC-----CHHHHHHHHHHHHHHHHHSCTTCT--------TCTTHHHHHHHHHHTTCSSHHHHHH
T ss_pred HH--HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHHcccccc--------CCcHHHHHHHHHHHHcCCChHHHHH
Confidence 22 22688888888754 278899999999999875321100 0002468899999999999999999
Q ss_pred HHHHHHHccCCCCcc-HHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 008257 192 LLQVLVGLTSSPTTV-LSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSP 246 (572)
Q Consensus 192 a~~aL~~l~~~~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~ 246 (572)
++.+|..+....... ...... .....+|.|.+++...++++|..|..++..++.
T Consensus 166 al~~l~~~~~~~~~~~~~l~~~-l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 166 CTQLFNASMKEEKDGYSTLQRY-LKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHHHHHHHCCSCSHHHHHH-HTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcchhHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999998887543210 111111 124689999999999999999999999987763
No 81
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.68 E-value=0.015 Score=59.75 Aligned_cols=341 Identities=13% Similarity=0.109 Sum_probs=194.5
Q ss_pred hhhHHHHHHHHh-cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChH-HHHH-HhcCCCHHHHHHHHHHHHHcCCC
Q 008257 171 EDIVHNLLHLIS-NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATI-SLVQ-FVEAPQNDLRLASIELIQNLSPH 247 (572)
Q Consensus 171 ~~~i~~Lv~lL~-~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~-~Lv~-lL~~~~~~v~~~a~~~L~~Ls~~ 247 (572)
...+..++++|. ....++.+..+..+..+.......+.....+.+..... .+.. ++..++.-....+..++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 346788999998 46778888888777777655321112233334433322 2333 33334455667777777777633
Q ss_pred CC--hhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCC--hHHHHHHHhhhccCCC-
Q 008257 248 MG--HELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGA--FGLIFSRVKSIQLGET- 322 (572)
Q Consensus 248 ~~--~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~--l~~Lv~lL~~~~~~~~- 322 (572)
.. .+..+.+... +.+...|.+... ...+..++.+|..|.. .++.+..+++.++ +|+++.+++..-.+..
T Consensus 156 ~~~~~~~l~~l~~~----~~~~~~L~~~~~-~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~ 229 (480)
T 1ho8_A 156 GLHNVKLVEKLLKN----NNLINILQNIEQ-MDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLA 229 (480)
T ss_dssp TTCCHHHHHHHHHC----HHHHHHHHCTTC-HHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC----
T ss_pred CCccHhHHHHHhhh----HHHHHHhccccC-CchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccc
Confidence 21 2221222221 146666666432 2445567888887776 6788888887654 7888777664210100
Q ss_pred ------CCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCch--HHHHHHhccCCcHHHHHHHHHHHHHhhhhccc
Q 008257 323 ------RGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLA--ALFIELLQSNGLDKVQMVSATALENLSLESKN 394 (572)
Q Consensus 323 ------~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i--~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~ 394 (572)
.+.....+++-.++-.++-++. +++..+.+...++. +.|++.++....+++-+.+..+|.|+......
T Consensus 230 ~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF----~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~ 305 (480)
T 1ho8_A 230 TRIVATNSNHLGIQLQYHSLLLIWLLTF----NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVK 305 (480)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTT----SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSST
T ss_pred cccccccCCCccHHHHHHHHHHHHHHHc----CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccch
Confidence 0112246677788888888884 67788888877754 67788888764788889999999998653210
Q ss_pred cCCCCCCCCCCCCccccccccCCCccccccccccCccCccchh-hhhhccchHHHHHhhcC---CCHhHHHHHHHHHHHh
Q 008257 395 LTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETF-CLLEGHAVEKLIALLDH---TNEKVVEASLAALSTV 470 (572)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~-~l~~~g~i~~Lv~lL~~---~~~~v~~~A~~aL~~l 470 (572)
... .... .++..++ +++++.|.. +|+++.+..-.....|
T Consensus 306 ~~~------------------------------------~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L 348 (480)
T 1ho8_A 306 QHK------------------------------------KVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEIL 348 (480)
T ss_dssp THH------------------------------------HHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHH
T ss_pred hhh------------------------------------hHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHH
Confidence 000 0000 0222333 667777754 5666654332222221
Q ss_pred h---------------------hcCc------cchhhHHHHHhc--CChHHHHHHHhh---------cCCHHHHHHHHHH
Q 008257 471 I---------------------DDGV------DIEQGVMVLCEA--QGIKPILDVLLE---------KRTENLQRRAVWV 512 (572)
Q Consensus 471 ~---------------------~~~~------~~~~~~~~i~~~--g~i~~L~~lL~~---------~~~~~~~~~a~~~ 512 (572)
- .-++ -|.+++..+.+. ..++.|+++|.. +.|+....-|+.=
T Consensus 349 ~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~D 428 (480)
T 1ho8_A 349 ENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALND 428 (480)
T ss_dssp HHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeeccc
Confidence 1 0001 022222233221 234568888842 2245555455555
Q ss_pred HHHHHcc-hhhhhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhc
Q 008257 513 VERILRT-DDIAYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHID 559 (572)
Q Consensus 513 l~~l~~~-~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~ 559 (572)
|..++++ ++.+..+..-++= ....+|+.+.|++||..|-.|+..+-
T Consensus 429 igefvr~~P~gr~i~~~lg~K-~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 429 ITHVVELLPESIDVLDKTGGK-ADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHCTTHHHHHHHHSHH-HHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcchhHHHHHcCcH-HHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 6777765 6666555443333 46889999999999999998887653
No 82
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.53 E-value=0.019 Score=65.89 Aligned_cols=392 Identities=16% Similarity=0.136 Sum_probs=199.8
Q ss_pred hH-HHHHHhccc--CCHHHHHHHHHHHHHhhcC-----------CCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHH
Q 008257 77 VG-SCLINIMKS--GNMQAREAALKALNQISSC-----------EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVS 142 (572)
Q Consensus 77 g~-~~Lv~lL~s--~~~~~~~~A~~aL~~Ls~~-----------~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~a 142 (572)
|. ..|++.+.+ .+..+|..|+-.|.|.... ++..+..++.. |+..+.+. +..++...
T Consensus 35 ~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~----ll~~l~~~-----~~~ir~~l 105 (960)
T 1wa5_C 35 GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKE----IVPLMISL-----PNNLQVQI 105 (960)
T ss_dssp THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHH----HHHHHHHS-----CHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHH----HHHHHHhC-----CHHHHHHH
Confidence 45 778888754 3578899999999997632 11122223333 34444332 26789999
Q ss_pred HHHHHHHHhcC--CCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCC---ccHHHHHHHH--h
Q 008257 143 ATILANVVNSG--HDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPT---TVLSVVSAIK--S 215 (572)
Q Consensus 143 a~~L~nla~~~--~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~---~~~~~~~~i~--~ 215 (572)
+.+++.++..+ ..|. +.++.|++++.++++..+..++.+|..++.... ..++.+..+. -
T Consensus 106 ~~~ia~ia~~d~p~~Wp--------------~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l 171 (960)
T 1wa5_C 106 GEAISSIADSDFPDRWP--------------TLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVL 171 (960)
T ss_dssp HHHHHHHHHHHSTTTCT--------------THHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCccchh--------------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHH
Confidence 99999998752 3343 479999999998888888899999998886321 0012222111 0
Q ss_pred cCChHHHHHH-------hcCCCH---------HHHHHHHHHHHHcCCC-CChhHHHHHhcccCChhhHHhhhccCC----
Q 008257 216 SGATISLVQF-------VEAPQN---------DLRLASIELIQNLSPH-MGHELADALRGAVGQLGSLIRVISENV---- 274 (572)
Q Consensus 216 ~g~i~~Lv~l-------L~~~~~---------~v~~~a~~~L~~Ls~~-~~~~~~~~i~~~~g~l~~Lv~lL~~~~---- 274 (572)
..-.++++.+ +..... ++...++++++.+... .+....+.+. ..++.+..+|....
T Consensus 172 ~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~---~~~~~~~~~l~~~~p~~~ 248 (960)
T 1wa5_C 172 DVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQ---VGMGIFHKYLSYSNPLLE 248 (960)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHH---HHHHHHHHHHSCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH---HHHHHHHHHHcCCCCccc
Confidence 1124444443 333221 2233466777766533 2322222222 23445555554311
Q ss_pred ----C-----ChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhcc
Q 008257 275 ----G-----ISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFV 345 (572)
Q Consensus 275 ----~-----~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~ 345 (572)
+ ...++..+..++..+....++.-...+ ...++..+..+.+.. . ......+...++..+..++.
T Consensus 249 ~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~-~~~~~~~~~~l~~~~--~---~~~~~~~~~~al~fl~~~~~- 321 (960)
T 1wa5_C 249 DPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMI-NEFIQITWNLLTSIS--N---QPKYDILVSKSLSFLTAVTR- 321 (960)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHCC--S---CTTSHHHHHHHHHHHHHHHT-
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcC--C---CcCcHHHHHHHHHHHHHHhC-
Confidence 0 013455556666555432222111111 133445555554311 0 01234455566666666652
Q ss_pred CCCChHHHHHHHHcCchHHHH-----HHhccC--------Cc--------------HHHHHHHHHHHHHhhhhccccCCC
Q 008257 346 LSDEPDAIALCCEHNLAALFI-----ELLQSN--------GL--------------DKVQMVSATALENLSLESKNLTKL 398 (572)
Q Consensus 346 ~~~~~~~~~~i~~~g~i~~Lv-----~lL~~~--------~~--------------~~vk~~Aa~aL~~ls~~~~~~~~~ 398 (572)
.+..++.+...+.++.++ ..+.-. .+ ...+..|...|..++..-
T Consensus 322 ---~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~------ 392 (960)
T 1wa5_C 322 ---IPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKN------ 392 (960)
T ss_dssp ---SHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHC------
T ss_pred ---cHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHc------
Confidence 232222111112222222 222110 00 123333333443333211
Q ss_pred CCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHh----hc------CCCHhHHHHHHHHHH
Q 008257 399 PELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIAL----LD------HTNEKVVEASLAALS 468 (572)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~l----L~------~~~~~v~~~A~~aL~ 468 (572)
....+++++.. |. +.+-..+++|+.+++
T Consensus 393 ------------------------------------------~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~alg 430 (960)
T 1wa5_C 393 ------------------------------------------EVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFT 430 (960)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHH
T ss_pred ------------------------------------------chhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 11133333333 43 455678999999999
Q ss_pred HhhhcCccchhh---------HHHHHhcCChHHHHHHHhhcC---CHHHHHHHHHHHHHHHcchhhhhhhcCCCCchHHH
Q 008257 469 TVIDDGVDIEQG---------VMVLCEAQGIKPILDVLLEKR---TENLQRRAVWVVERILRTDDIAYEVSGDPNVSTAL 536 (572)
Q Consensus 469 ~l~~~~~~~~~~---------~~~i~~~g~i~~L~~lL~~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~L 536 (572)
.++..+.....+ ...+.. ..++..|+ ++ ++.+|..|+|++.+++.+- ..++.. .+...+
T Consensus 431 aia~~~~~~~~~~~~~~~~~~l~~~l~----~~v~p~l~-~~~~~~p~vr~~a~~~lg~~~~~~--~~~~l~--~~l~~l 501 (960)
T 1wa5_C 431 ALAINGNITNAGVSSTNNLLNVVDFFT----KEIAPDLT-SNNIPHIILRVDAIKYIYTFRNQL--TKAQLI--ELMPIL 501 (960)
T ss_dssp HHHBSSCCBTTBCCCBCTTCCHHHHHH----HHTHHHHH-CSSCSCHHHHHHHHHHHHHTGGGS--CHHHHH--HHHHHH
T ss_pred HHHHHhccccCCcccccccccHHHHHH----HHhHHHhc-CCCCCCceehHHHHHHHHHHHhhC--CHHHHH--HHHHHH
Confidence 998532100000 111100 11233443 45 7889999999999998651 111111 122367
Q ss_pred HHHhhcCCchhHHHHHHHHHhhccc
Q 008257 537 VDAFQHADYRTRQIAERALKHIDKI 561 (572)
Q Consensus 537 v~ll~~~~~~~~~~Aa~aL~~L~~~ 561 (572)
++.|.+.++.|+..|++||.++...
T Consensus 502 ~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 502 ATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCCChhHHHHHHHHHHHHHhc
Confidence 8888888899999999999998864
No 83
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.00062 Score=65.06 Aligned_cols=210 Identities=10% Similarity=0.117 Sum_probs=137.6
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHH-hhc-CCCcHHHHHH-cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCC-
Q 008257 79 SCLINIMKSGNMQAREAALKALNQ-ISS-CEPSAKVLIH-AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGH- 154 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~-Ls~-~~~~~~~iv~-~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~- 154 (572)
+.+.+.+.|.+...|..|+.+|.. +.. .++....-.+ ...+..|.+.+.. +....++..|+.+|+.|+.+-.
T Consensus 19 ~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~----D~n~~v~~~A~~al~~la~~l~~ 94 (249)
T 2qk1_A 19 KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK----DANIQAVALAAQSVELICDKLKT 94 (249)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH----CSCHHHHHHHHHHHHHHHHHHCT
T ss_pred hhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHhccc
Confidence 456677889999999999999999 873 2221100001 1236666777732 1237789999999999996421
Q ss_pred -CCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHH
Q 008257 155 -DFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDL 233 (572)
Q Consensus 155 -~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 233 (572)
.+.. =....++|.++..+....+.++..+..+|..++...+.. ..... -...++.|+..|+++++.+
T Consensus 95 ~~f~~---------~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~-~~~~~--l~~ll~~l~~~l~~k~~~v 162 (249)
T 2qk1_A 95 PGFSK---------DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL-ASSGR--NEDMLKDILEHMKHKTPQI 162 (249)
T ss_dssp TTSCH---------HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT-CTTCT--THHHHHHHHHHTTCSSHHH
T ss_pred ccccH---------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc-ccCCc--HHHHHHHHHHHHcCCChHH
Confidence 1110 022457899999999988999998888877776532100 00000 0124678888999999999
Q ss_pred HHHHHHHHHHcCCCCC---hhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHH
Q 008257 234 RLASIELIQNLSPHMG---HELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLI 310 (572)
Q Consensus 234 ~~~a~~~L~~Ls~~~~---~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~L 310 (572)
|+.++.+|..+....+ ..+...+.. ..+|.|.+++...+. ++|..|..++..+. ..+....+.++
T Consensus 163 k~~al~~l~~~~~~~~~~~~~l~~~l~~--~iip~l~~~l~D~~~--~VR~aA~~~l~~i~--------~~vG~~~~~p~ 230 (249)
T 2qk1_A 163 RMECTQLFNASMKEEKDGYSTLQRYLKD--EVVPIVIQIVNDTQP--AIRTIGFESFAILI--------KIFGMNTFVKT 230 (249)
T ss_dssp HHHHHHHHHHHHHHCCSCSHHHHHHHTT--THHHHHHHHHTCSSH--HHHHHHHHHHHHHH--------HHHCSGGGHHH
T ss_pred HHHHHHHHHHHHHHcCCcchhHHHHHHH--HHHHHHHHHhcCCCH--HHHHHHHHHHHHHH--------HHhCHHHHHHH
Confidence 9999999988875433 333333412 479999999987775 89999998887753 23444456666
Q ss_pred HHHHhh
Q 008257 311 FSRVKS 316 (572)
Q Consensus 311 v~lL~~ 316 (572)
+.-|.+
T Consensus 231 l~~Ld~ 236 (249)
T 2qk1_A 231 LEHLDN 236 (249)
T ss_dssp HHHSCH
T ss_pred HHHHhH
Confidence 666654
No 84
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.33 E-value=0.011 Score=66.57 Aligned_cols=268 Identities=11% Similarity=0.136 Sum_probs=167.7
Q ss_pred CChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCh--hHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCC-C
Q 008257 217 GATISLVQFVEAPQNDLRLASIELIQNLSPHMGH--ELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPE-R 293 (572)
Q Consensus 217 g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~--~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~-~ 293 (572)
+.+..|.+.+..+... +.|+.++..|+...+. .. +...- +.++.++..+..... .++.+|..++..+.. -
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~-e~~~~--~~~~~~~~~~~dk~~--~v~~aa~~~~~~~~~~~ 126 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV-EPYIV--QLVPAICTNAGNKDK--EIQSVASETLISIVNAV 126 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT-HHHHH--TTHHHHHHHTTCSSH--HHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc-ccchH--HHHHHHHHHhcCCch--HHHHHHHHHHHHHHHhC
Confidence 4667777787766544 8999999999954321 22 22222 467888888776664 677666655443322 1
Q ss_pred cHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCC
Q 008257 294 DLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNG 373 (572)
Q Consensus 294 ~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 373 (572)
+++-. ...+|.|+..|.+.. .=+.+..|+..+..++.. .|+. -...--.+||.+-+.+.+.
T Consensus 127 ~~~a~-----~~~~~~~~~~~~~~~---------kw~~k~~~l~~~~~~~~~---~~~~-~~~~~~~~~p~~~~~~~d~- 187 (986)
T 2iw3_A 127 NPVAI-----KALLPHLTNAIVETN---------KWQEKIAILAAFSAMVDA---AKDQ-VALRMPELIPVLSETMWDT- 187 (986)
T ss_dssp CGGGH-----HHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHH---SHHH-HHHHHHHHHHHHHHHTTCS-
T ss_pred CHHHH-----HHHHHHHHHHhcccc---------chHHHHHHHHHHHHHHHH---hHHH-HHHhccchhcchHhhcccC-
Confidence 22222 245799999886521 112366788888888842 2332 2233346889999999888
Q ss_pred cHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHhhc
Q 008257 374 LDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIALLD 453 (572)
Q Consensus 374 ~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL~ 453 (572)
.++|+..|-.++..++..-.|.+ =...||.||+.+.
T Consensus 188 k~~v~~~~~~~~~~~~~~~~n~d--------------------------------------------~~~~~~~~~~~~~ 223 (986)
T 2iw3_A 188 KKEVKAAATAAMTKATETVDNKD--------------------------------------------IERFIPSLIQCIA 223 (986)
T ss_dssp SHHHHHHHHHHHHHHGGGCCCTT--------------------------------------------TGGGHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCCCcc--------------------------------------------hhhhHHHHHHHhc
Confidence 89999999999877764332211 0247899999999
Q ss_pred CCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc---hhhhhhhcCCC
Q 008257 454 HTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT---DDIAYEVSGDP 530 (572)
Q Consensus 454 ~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~---~~~~~~~~~~~ 530 (572)
.+++ +..++..|+.-..-.+ .+.-.-.+. +|.|.+=| ..++..++++++-++.|+++. +.....|..
T Consensus 224 ~p~~--~~~~~~~l~~~tfv~~-v~~~~l~~~----~p~l~r~l-~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-- 293 (986)
T 2iw3_A 224 DPTE--VPETVHLLGATTFVAE-VTPATLSIM----VPLLSRGL-NERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-- 293 (986)
T ss_dssp CTTH--HHHHHHHHTTCCCCSC-CCHHHHHHH----HHHHHHHH-TSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT--
T ss_pred Chhh--hHHHHHHhhcCeeEee-ecchhHHHH----HHHHHhhh-ccCcchhheeeEEEEcchhhhcCCHHHHhhhhh--
Confidence 8744 4455555553322111 111122222 35666667 367888999999999999964 444445544
Q ss_pred CchHHHHHHhh-cCCchhHHHHHHHHHhhcccCCC
Q 008257 531 NVSTALVDAFQ-HADYRTRQIAERALKHIDKIPNF 564 (572)
Q Consensus 531 ~~~~~Lv~ll~-~~~~~~~~~Aa~aL~~L~~~~~~ 564 (572)
.+-+.|-+... -.+|++|+.|.+|+..|.+..+.
T Consensus 294 ~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 294 KLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp TTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 34334544444 47799999999999999775443
No 85
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.26 E-value=0.0034 Score=61.26 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=117.7
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHH-hhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCC
Q 008257 79 SCLINIMKSGNMQAREAALKALNQ-ISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFD 157 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~-Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~ 157 (572)
..+++-|.+++.+.++.++.-|.. ++.+.+.....++.||+..|+++.... +.+.+.++..++.+|-.+..++.
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-----~gN~q~Y~L~AL~~LM~~v~Gm~ 195 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-----DHNYQSYILRALGQLMLFVDGML 195 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-----CHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-----ChHHHHHHHHHHHHHHhcccccc
Confidence 567788888888999999999999 667788899999999999999999764 37889999999999965421111
Q ss_pred ccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCC-ccHHHHHHHH---hcC---ChHHHHHHhc---
Q 008257 158 SITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPT-TVLSVVSAIK---SSG---ATISLVQFVE--- 227 (572)
Q Consensus 158 ~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~-~~~~~~~~i~---~~g---~i~~Lv~lL~--- 227 (572)
..+.....|..+..++.+.+..+...++..|..++...+ +...+.+++. ... -...|+.+|.
T Consensus 196 --------gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~ 267 (339)
T 3dad_A 196 --------GVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKN 267 (339)
T ss_dssp --------HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTT
T ss_pred --------chhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccC
Confidence 133456789999999999888999999999999987653 2112222222 122 3779999997
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 008257 228 APQNDLRLASIELIQNLS 245 (572)
Q Consensus 228 ~~~~~v~~~a~~~L~~Ls 245 (572)
+.+.+++.+|..++..+-
T Consensus 268 ~~D~elq~~amtLIN~lL 285 (339)
T 3dad_A 268 GADPELLVYTVTLINKTL 285 (339)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 778899999988776654
No 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.21 E-value=0.044 Score=61.83 Aligned_cols=299 Identities=12% Similarity=0.116 Sum_probs=184.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCc--HHHHHHcC
Q 008257 41 LLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPS--AKVLIHAG 117 (572)
Q Consensus 41 Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~--~~~iv~~G 117 (572)
+++-++.+...-+..++..+..+...+..-..+ ..++ ..|.+.+...... +.|+.++..|+..... ..+-.--+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~ 95 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEHDV-PEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQ 95 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSC-CHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHT
T ss_pred HHhhccccchhHHHHHHHHHHHHHhcccccccc-chhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHH
Confidence 455565544444456777777765432111111 1245 7777777653323 8999999999954322 11222235
Q ss_pred ChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcC-ChhHHHHHHHHH
Q 008257 118 ILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNT-GPTIECKLLQVL 196 (572)
Q Consensus 118 ~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~-~~~~q~~a~~aL 196 (572)
.+|.++..+... ...+|..|..++..++..-+ .-....++|.|+..|.++ ..+.+..|+.++
T Consensus 96 ~~~~~~~~~~dk-----~~~v~~aa~~~~~~~~~~~~------------~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~ 158 (986)
T 2iw3_A 96 LVPAICTNAGNK-----DKEIQSVASETLISIVNAVN------------PVAIKALLPHLTNAIVETNKWQEKIAILAAF 158 (986)
T ss_dssp THHHHHHHTTCS-----SHHHHHHHHHHHHHHHHHSC------------GGGHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-----chHHHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 778887777643 26788888888888876432 112267899999988765 688899999999
Q ss_pred HHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCC-CChhHHHHHhcccCChhhHHhhhccCCC
Q 008257 197 VGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH-MGHELADALRGAVGQLGSLIRVISENVG 275 (572)
Q Consensus 197 ~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~-~~~~~~~~i~~~~g~l~~Lv~lL~~~~~ 275 (572)
..++.... +.+-.. -...||.+-+.+-...++|+..|..++..++.. .+.++ . ..+|.||+.+.+++.
T Consensus 159 ~~~~~~~~--~~~~~~--~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~----~---~~~~~~~~~~~~p~~ 227 (986)
T 2iw3_A 159 SAMVDAAK--DQVALR--MPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI----E---RFIPSLIQCIADPTE 227 (986)
T ss_dssp HHHHHHSH--HHHHHH--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT----G---GGHHHHHHHHHCTTH
T ss_pred HHHHHHhH--HHHHHh--ccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch----h---hhHHHHHHHhcChhh
Confidence 99986532 122222 234677777777777899999999999988854 23343 1 579999999999863
Q ss_pred ChHHHHHHHHHHhcCCCC---cHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHH
Q 008257 276 ISKEQAAAVGLLAELPER---DLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDA 352 (572)
Q Consensus 276 ~~~~~~~A~~~L~~L~~~---~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~ 352 (572)
+.. ++-.|+.-+.- +...-. + .+|.|..-|... ...++..++-.+-|++.-. +||..
T Consensus 228 ---~~~-~~~~l~~~tfv~~v~~~~l~-~----~~p~l~r~l~~~----------~~~~~r~~~~~~~n~~~lv-~~~~~ 287 (986)
T 2iw3_A 228 ---VPE-TVHLLGATTFVAEVTPATLS-I----MVPLLSRGLNER----------ETGIKRKSAVIIDNMCKLV-EDPQV 287 (986)
T ss_dssp ---HHH-HHHHHTTCCCCSCCCHHHHH-H----HHHHHHHHHTSS----------SHHHHHHHHHHHHHHHTTC-CCHHH
T ss_pred ---hHH-HHHHhhcCeeEeeecchhHH-H----HHHHHHhhhccC----------cchhheeeEEEEcchhhhc-CCHHH
Confidence 322 34444443321 111101 1 135555555431 1233455666666666432 68876
Q ss_pred HHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 008257 353 IALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLE 391 (572)
Q Consensus 353 ~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~ 391 (572)
...+. -..+|-|-+....-.+|++|+.|..|+..|-.-
T Consensus 288 ~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 288 IAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred Hhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 65543 245666666555555899999999999888543
No 87
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.20 E-value=0.0057 Score=59.73 Aligned_cols=155 Identities=13% Similarity=0.142 Sum_probs=108.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhH-HHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHH-H
Q 008257 39 QPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKV-LVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI-H 115 (572)
Q Consensus 39 ~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~-~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv-~ 115 (572)
..++..|.+++.+.++.+.--|..+.. +..--. .|...|...|+++...++...|..+++||.+|..+......++ +
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence 445677778888888888888887443 444444 4444555999999999999999999999999998877777777 5
Q ss_pred cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhh---hHHHHHHHHh---cCChhHH
Q 008257 116 AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSED---IVHNLLHLIS---NTGPTIE 189 (572)
Q Consensus 116 ~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~---~i~~Lv~lL~---~~~~~~q 189 (572)
.-.|..+..++.+. +..+.+.|..+|..++..+++.-.....+ ......+. -...|+.+|. +.+.++|
T Consensus 201 ~~fI~~lyslv~s~-----~~~V~k~AL~LL~v~V~~se~~~~lv~~a-v~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq 274 (339)
T 3dad_A 201 SDTIQWLYTLCASL-----SRLVVKTALKLLLVFVEYSENNAPLFIRA-VNSVASTTGAPPWANLVSILEEKNGADPELL 274 (339)
T ss_dssp HHHHHHHHHGGGCS-----CHHHHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHHHHCCCTTHHHHHHHTTTTSCCHHHH
T ss_pred HHHHHHHHHHHcCc-----cHHHHHHHHHHHHHHHccCcccchHHHHH-HHHhhhccCCCcHHHHHHHHhccCCCCHHHH
Confidence 66788888888753 37888899999999988654211100000 00000011 2668999997 7889999
Q ss_pred HHHHHHHHHc
Q 008257 190 CKLLQVLVGL 199 (572)
Q Consensus 190 ~~a~~aL~~l 199 (572)
.++...+-.+
T Consensus 275 ~~amtLIN~l 284 (339)
T 3dad_A 275 VYTVTLINKT 284 (339)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9887655443
No 88
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.16 E-value=0.56 Score=53.65 Aligned_cols=350 Identities=9% Similarity=0.042 Sum_probs=172.9
Q ss_pred HHHHHHHHHHhhccC-cchHHHHHHcCCcHHHHHHHc-----cCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHH-
Q 008257 11 TVEKAEKTLANLEKC-ENNVRQMAENGRLQPLLTQIL-----EGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLI- 82 (572)
Q Consensus 11 ~~~~A~~~L~~L~~~-~~n~~~i~~~g~i~~Lv~~L~-----~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv- 82 (572)
+...+.++|..+... ++..... -...++..+..+. ...+.+...+...+..++.....+..+..... +.|+
T Consensus 262 vk~~~~~~l~~l~~~~~~~f~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~ 340 (960)
T 1wa5_C 262 VKSSIQELVQLYTTRYEDVFGPM-INEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITE 340 (960)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHH
Confidence 455666777766542 2111100 1122334444443 33466777888888777654333322211111 3333
Q ss_pred ----Hhcc---------cCC--------------HHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHH----HhccCC
Q 008257 83 ----NIMK---------SGN--------------MQAREAALKALNQISSCEPSAKVLIHAGILPPLVKD----LFTVGS 131 (572)
Q Consensus 83 ----~lL~---------s~~--------------~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~l----L~s~~~ 131 (572)
..|. .++ ...+..|..+|..|+..-. +.+ +|+++.+ +.....
T Consensus 341 ~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v-----~~~~l~~i~~~l~~~~~ 413 (960)
T 1wa5_C 341 QIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLV-----TNIFLAHMKGFVDQYMS 413 (960)
T ss_dssp HTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHH-----HHHHHHHHHHHHHHHHC
T ss_pred HHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhH-----HHHHHHHHHHHHHHhcc
Confidence 2321 011 1246677888888876433 222 3444443 431100
Q ss_pred C-CCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhh-HHHHHHHHhcC---ChhHHHHHHHHHHHccCCCCcc
Q 008257 132 N-HLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDI-VHNLLHLISNT---GPTIECKLLQVLVGLTSSPTTV 206 (572)
Q Consensus 132 ~-~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~-i~~Lv~lL~~~---~~~~q~~a~~aL~~l~~~~~~~ 206 (572)
+ +.+-..|+.|..+++.++........ .+......+.-... +..++..|.++ .+.++..++++|..++..-.
T Consensus 414 ~~~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-- 490 (960)
T 1wa5_C 414 DPSKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-- 490 (960)
T ss_dssp ----CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--
T ss_pred CcchhHHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--
Confidence 0 01235788899999999864221110 00000000011111 22334445666 78899999999999987532
Q ss_pred HHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC------hhH-HHHHhcc-cCChhhHHhhhccCC----
Q 008257 207 LSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMG------HEL-ADALRGA-VGQLGSLIRVISENV---- 274 (572)
Q Consensus 207 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~------~~~-~~~i~~~-~g~l~~Lv~lL~~~~---- 274 (572)
.+.. ...++.++..|.+++..|+..|+.+|.+++.... .+. .+.+... +..++.|+.++....
T Consensus 491 ~~~l-----~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~ 565 (960)
T 1wa5_C 491 KAQL-----IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPE 565 (960)
T ss_dssp HHHH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHH
T ss_pred HHHH-----HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCC
Confidence 1211 3367888888888889999999999999886311 010 0112110 135666777777641
Q ss_pred ---CChHHHHHHHHH-HhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCCh
Q 008257 275 ---GISKEQAAAVGL-LAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEP 350 (572)
Q Consensus 275 ---~~~~~~~~A~~~-L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~ 350 (572)
+. +.-..|+.. +..+...-..... ..++.|...+...... ..+..+...+..+|..+... .++
T Consensus 566 ~~~~~-e~l~~al~~vv~~~~~~~~p~~~-----~l~~~L~~~l~~~~~~-----~~~~~~~~~~~e~l~~l~~~--~~~ 632 (960)
T 1wa5_C 566 KLAEN-EFLMRSIFRVLQTSEDSIQPLFP-----QLLAQFIEIVTIMAKN-----PSNPRFTHYTFESIGAILNY--TQR 632 (960)
T ss_dssp HHTSC-HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHHHHHHHTTS-----CCCHHHHHHHHHHHHHHHHT--SCG
T ss_pred ccccc-HHHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHHHhC-----CCCcHHHHHHHHHHHHHHhc--CCc
Confidence 11 222222222 2222111011111 2345566665542111 12333444455555555432 245
Q ss_pred HHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHHHHhhhh
Q 008257 351 DAIALCCEHNLAALFIELLQSNGLDKVQMVSATALENLSLE 391 (572)
Q Consensus 351 ~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~ 391 (572)
+....+ ...++|++...|... .......+...+..+...
T Consensus 633 ~~~~~~-~~~~~p~~~~iL~~~-~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 633 QNLPLL-VDSMMPTFLTVFSED-IQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp GGHHHH-HHHHHHHHHHHHHTT-CTTTHHHHHHHHHHHHHH
T ss_pred chHHHH-HHHHHHHHHHHHHhh-hHhhHHHHHHHHHHHHHh
Confidence 544433 345779999999876 455666666666666543
No 89
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.15 E-value=0.52 Score=53.83 Aligned_cols=194 Identities=11% Similarity=0.004 Sum_probs=105.8
Q ss_pred CCcHHHHHHHc-cCCHHHHHHHHHHHHHhcc------CcchhHHHHhhhHHHHHHhccc---CCHHHHHHHHHHHHHhhc
Q 008257 36 GRLQPLLTQIL-EGPQETKLSLAAFLGDLAL------NSDVKVLVARTVGSCLINIMKS---GNMQAREAALKALNQISS 105 (572)
Q Consensus 36 g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~~------~~~~k~~i~~~g~~~Lv~lL~s---~~~~~~~~A~~aL~~Ls~ 105 (572)
++...+..+|. +.+..+|..|+..|.+... .++.|..|. ..|++++.. +...++.....++..++.
T Consensus 57 ~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir----~~ll~~l~~~~~~~~~ir~kl~~~la~i~~ 132 (963)
T 2x19_B 57 QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLK----AQLFTQITRFASGSKIVLTRLCVALASLAL 132 (963)
T ss_dssp THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHH----HHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 33445555664 4567899999999988643 223343333 444444433 457889999999999987
Q ss_pred C--CCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCC---ccccch--hhhHHHHH
Q 008257 106 C--EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPD---NQTLVS--EDIVHNLL 178 (572)
Q Consensus 106 ~--~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~---~~~l~~--~~~i~~Lv 178 (572)
. ++.+. +.++-|+..+++......+....+.+..+|..++..-.+.+. ..+.. ...+.. ..+++.+.
T Consensus 133 ~~~p~~Wp-----~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~-~~~~r~~~~~~l~~~~~~i~~ll~ 206 (963)
T 2x19_B 133 SMMPDAWP-----CAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRL-PQYRKGLVRTSLAVECGAVFPLLE 206 (963)
T ss_dssp HHTTTTST-----THHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC----------CCSGGGHHHHHHHHH
T ss_pred HhCccccc-----hHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccC-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 55553 567888888864100000245678888888888742111110 00000 011111 22333344
Q ss_pred HHHhcCC--hhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 008257 179 HLISNTG--PTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPH 247 (572)
Q Consensus 179 ~lL~~~~--~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~ 247 (572)
.++.... ..+...+++++.......... . .....++.++.++. +++++..|+.++..+...
T Consensus 207 ~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~-~-----~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~ 269 (963)
T 2x19_B 207 QLLQQPSSPSCVRQKVLKCFSSWVQLEVPL-Q-----DCEALIQAAFAALQ--DSELFDSSVEAIVNAISQ 269 (963)
T ss_dssp HHHSCTTCCHHHHHHHHHHHHHHHTSSCCG-G-----GTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTC
T ss_pred HHHhCCCCchHHHHHHHHHHHHHHcCCCCc-c-----cchHHHHHHHHHhC--CchHHHHHHHHHHHHHcc
Confidence 4443322 247777777776544322110 0 01223566666663 566889999998888753
No 90
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.00 E-value=0.45 Score=54.64 Aligned_cols=221 Identities=14% Similarity=0.163 Sum_probs=127.5
Q ss_pred cHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcc-cCCHHHHHHHHHHHHHhhcC-----CCcH
Q 008257 38 LQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMK-SGNMQAREAALKALNQISSC-----EPSA 110 (572)
Q Consensus 38 i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~-----~~~~ 110 (572)
++.++..+-+++.+.|..|-..|..+-.++ ++ +.+..+|. +.++.+|..|+..|.+.... ++..
T Consensus 18 Le~av~~ly~p~~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~ 88 (1023)
T 4hat_C 18 LDQVVSTFYQGSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDH 88 (1023)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHCT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHcCc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence 344555555666566666666666443332 23 44455554 56789999999999987752 3333
Q ss_pred HHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC--CCCCccccCCCccccchhhhHHHHHHHHhcCChhH
Q 008257 111 KVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG--HDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTI 188 (572)
Q Consensus 111 ~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~--~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~ 188 (572)
+.-++...+..+.+.-..+..-..+.-++.+.+.+++.++... ..|. +.++.++.+++++ +..
T Consensus 89 ~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp--------------~~l~dL~~~l~~~-~~~ 153 (1023)
T 4hat_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP--------------EFIPELIGSSSSS-VNV 153 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT--------------THHHHHHHHTTTC-HHH
T ss_pred HHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhch--------------HHHHHHHHHhcCC-HHH
Confidence 4445555666665543211000001456777899999998754 4453 4688888888643 344
Q ss_pred HHHHHHHHHHccCC-------CCc---cHHHHHHHHhcCChHHHHH----HhcC-CCHHHHHHHHHHHHHcCCCCChhHH
Q 008257 189 ECKLLQVLVGLTSS-------PTT---VLSVVSAIKSSGATISLVQ----FVEA-PQNDLRLASIELIQNLSPHMGHELA 253 (572)
Q Consensus 189 q~~a~~aL~~l~~~-------~~~---~~~~~~~i~~~g~i~~Lv~----lL~~-~~~~v~~~a~~~L~~Ls~~~~~~~~ 253 (572)
....++.|..+... .-. ...++..+.+. ++.++. .|.. .++++...+++++......-+-.
T Consensus 154 ~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~--~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~-- 229 (1023)
T 4hat_C 154 CENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKE--FEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYR-- 229 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTH--
T ss_pred HHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHH--
Confidence 45555555543221 111 11233344443 444444 4433 45677888888888877664322
Q ss_pred HHHhcccCChhhHH-hhhccCCCChHHHHHHHHHHhcCCC
Q 008257 254 DALRGAVGQLGSLI-RVISENVGISKEQAAAVGLLAELPE 292 (572)
Q Consensus 254 ~~i~~~~g~l~~Lv-~lL~~~~~~~~~~~~A~~~L~~L~~ 292 (572)
.+... ..++.+. .+|.+ ++.+..|+.+|..+..
T Consensus 230 -~i~~~-~ll~~l~~~~L~~----~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 230 -YIYET-NILELLSTKFMTS----PDTRAITLKCLTEVSN 263 (1023)
T ss_dssp -HHHSS-SHHHHHHTHHHHS----HHHHHHHHHHHHHHHT
T ss_pred -Hhcch-hHHHHHHHHHcCC----HHHHHHHHHHHHHHHc
Confidence 34444 6788888 77743 2678888888777654
No 91
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.53 E-value=1.7 Score=50.10 Aligned_cols=216 Identities=14% Similarity=0.138 Sum_probs=113.8
Q ss_pred HHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcc-cCCHHHHHHHHHHHHHhhcC-----CCcHHHHH
Q 008257 42 LTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMK-SGNMQAREAALKALNQISSC-----EPSAKVLI 114 (572)
Q Consensus 42 v~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~-----~~~~~~iv 114 (572)
+..+.+++...|..|-..|..+..++ +. ..+..+|. +.++.+|..|+..|.+.... ++..+.-+
T Consensus 22 l~~~~~p~~~~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~i 92 (1049)
T 3m1i_C 22 VSTFYQGSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI 92 (1049)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHH
Confidence 33334455556666666676543332 23 55555564 46788999999999997642 22222333
Q ss_pred HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhc--CCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHH
Q 008257 115 HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNS--GHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKL 192 (572)
Q Consensus 115 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~--~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a 192 (572)
+...+..+...-.....-.....++...+.+++.++.. ...|. +.++.|+.+++ .++..+..+
T Consensus 93 r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp--------------~ll~~L~~~~~-~~~~~~~~~ 157 (1049)
T 3m1i_C 93 RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP--------------EFIPELIGSSS-SSVNVCENN 157 (1049)
T ss_dssp HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT--------------THHHHHHHHHT-TCHHHHHHH
T ss_pred HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccch--------------HHHHHHHHHHc-cChHHHHHH
Confidence 43344444332210000000146788899999999876 23343 47889999986 455556666
Q ss_pred HHHHHHccCC-----CC--cc---HHHHHHHHhcCChHHH----HHHhcC-CCHHHHHHHHHHHHHcCCCCChhHHHHHh
Q 008257 193 LQVLVGLTSS-----PT--TV---LSVVSAIKSSGATISL----VQFVEA-PQNDLRLASIELIQNLSPHMGHELADALR 257 (572)
Q Consensus 193 ~~aL~~l~~~-----~~--~~---~~~~~~i~~~g~i~~L----v~lL~~-~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~ 257 (572)
+.+|..++.. .. .. ...+..+.+. ++.+ ...++. .+..++..+++++.......+.. .+.
T Consensus 158 l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~--~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~---~~~ 232 (1049)
T 3m1i_C 158 MIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKE--FEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYR---YIY 232 (1049)
T ss_dssp HHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTH---HHH
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHH---HHh
Confidence 6666665521 10 00 0112333332 3333 444443 35678899999887766543322 122
Q ss_pred cccCChhhHHhhhccCCCChHHHHHHHHHHhcC
Q 008257 258 GAVGQLGSLIRVISENVGISKEQAAAVGLLAEL 290 (572)
Q Consensus 258 ~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L 290 (572)
.. ..++.+.+.+.. + ++.+..|+.+|..+
T Consensus 233 ~~-~ll~~l~~~~l~-~--~~~~~~a~~~L~~i 261 (1049)
T 3m1i_C 233 ET-NILELLSTKFMT-S--PDTRAITLKCLTEV 261 (1049)
T ss_dssp SS-SHHHHHHTHHHH-S--HHHHHHHHHHHHHH
T ss_pred hh-hHHHHHHHHhCC-C--HhHHHHHHHHHHHH
Confidence 22 444444422211 2 25555666655444
No 92
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.97 E-value=3.1 Score=47.39 Aligned_cols=129 Identities=9% Similarity=0.002 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHc-cCCHHHHHHHHHHHHHhcc------CcchhHHHHhhhHHH
Q 008257 8 NLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQIL-EGPQETKLSLAAFLGDLAL------NSDVKVLVARTVGSC 80 (572)
Q Consensus 8 ~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~~------~~~~k~~i~~~g~~~ 80 (572)
|+..+..|...|..+..+++... .+..+|. +.+..+|..|+..|.+... .++.|..+.+.-.+.
T Consensus 20 d~~~r~~A~~~L~~~~~~p~~w~---------~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~ 90 (971)
T 2x1g_F 20 NSQNQAITHEWLTDAEASPQAWQ---------FSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILES 90 (971)
T ss_dssp TTTC----CHHHHHTTTSTHHHH---------HHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCHHHHH---------HHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHH
Confidence 44445555566655555443332 3445554 3567889999999988643 223343333222233
Q ss_pred HHHhcccCCHHHHHHHHHHHHHhhcCCC-cHHHHHHcCChHHHHHHHhccCCCC-CCcchHHHHHHHHHHHHh
Q 008257 81 LINIMKSGNMQAREAALKALNQISSCEP-SAKVLIHAGILPPLVKDLFTVGSNH-LPMRLKEVSATILANVVN 151 (572)
Q Consensus 81 Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~-~~~~iv~~G~i~~Lv~lL~s~~~~~-~~~~~~~~aa~~L~nla~ 151 (572)
+.+.- ++...++.....+|..++..+- .+ .+.++-|+..+.++..+. .++...+.+..+|..++.
T Consensus 91 l~~~~-~~~~~vr~kl~~~la~i~~~~~p~W-----p~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~E 157 (971)
T 2x1g_F 91 IVRFA-GGPKIVLNRLCISLGAYIVHMLGEW-----PGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPE 157 (971)
T ss_dssp HHHHT-TSCHHHHHHHHHHHHHHHHHTTCC-----------HHHHHHHHTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHHHHHccccc-----cHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHH
Confidence 33332 2357889999999999987422 44 346788888887531000 014577888888888874
No 93
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.75 E-value=0.035 Score=52.36 Aligned_cols=170 Identities=11% Similarity=0.024 Sum_probs=88.4
Q ss_pred HHHhcCChhHHHHHHHH-----HHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHH-----HHcCCCC
Q 008257 179 HLISNTGPTIECKLLQV-----LVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELI-----QNLSPHM 248 (572)
Q Consensus 179 ~lL~~~~~~~q~~a~~a-----L~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L-----~~Ls~~~ 248 (572)
.++.+++++++..++.. |..+..+++ ..+|....+.-..+.|..++.+++..||..++..+ ..|..+.
T Consensus 57 ~ll~d~~~~VR~~AA~~l~~~~l~~L~~D~~--~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~l~~~~L~~L~~D~ 134 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSPVEALTPLIRDSD--EVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADR 134 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSCGGGGGGGTTCSS--HHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCS
T ss_pred HHhcCCCHHHHHHHHHhCCHHHHHHHccCcC--HHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCC
Confidence 45567788888888753 444555554 46777777666667777888888888888877532 2233333
Q ss_pred ChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcch
Q 008257 249 GHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFV 328 (572)
Q Consensus 249 ~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~ 328 (572)
...++..+... -..+.+..++..++. .++..+++.+. -+.+..++.+ .+
T Consensus 135 d~~VR~~aA~~-l~~~~l~~l~~D~d~--~VR~~aa~~l~------------------~~ll~~ll~D----------~d 183 (244)
T 1lrv_A 135 DYLVRAYVVQR-IPPGRLFRFMRDEDR--QVRKLVAKRLP------------------EESLGLMTQD----------PE 183 (244)
T ss_dssp SHHHHHHHHHH-SCGGGGGGTTTCSCH--HHHHHHHHHSC------------------GGGGGGSTTC----------SS
T ss_pred CHHHHHHHHHh-cCHHHHHHHHcCCCH--HHHHHHHHcCC------------------HHHHHHHHcC----------CC
Confidence 33443333222 122333334444442 66665555311 1111122222 12
Q ss_pred hhHHHHHHHHH-----HHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHHH
Q 008257 329 TPFLEGLLSVL-----ARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATAL 385 (572)
Q Consensus 329 ~~~~e~a~~aL-----~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~aL 385 (572)
..+...++..| ..+..- .++..+..+.+.-..+.|..| +++ +..|+..|+..|
T Consensus 184 ~~VR~aaa~~l~~~~L~~Ll~D--~d~~VR~~aa~~l~~~~L~~L-~D~-~~~VR~aa~~~L 241 (244)
T 1lrv_A 184 PEVRRIVASRLRGDDLLELLHD--PDWTVRLAAVEHASLEALREL-DEP-DPEVRLAIAGRL 241 (244)
T ss_dssp HHHHHHHHHHCCGGGGGGGGGC--SSHHHHHHHHHHSCHHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHcC--CCHHHHHHHHHcCCHHHHHHc-cCC-CHHHHHHHHHHh
Confidence 23333333221 112111 355666666665556666665 666 788887776554
No 94
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.25 Score=47.47 Aligned_cols=188 Identities=16% Similarity=0.149 Sum_probs=120.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhccCcc---hhHHHH-hhh-H-HHHHHhcccCCHHHHHHHHHHHHHhhcCCC----c
Q 008257 40 PLLTQILEGPQETKLSLAAFLGDLALNSD---VKVLVA-RTV-G-SCLINIMKSGNMQAREAALKALNQISSCEP----S 109 (572)
Q Consensus 40 ~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~---~k~~i~-~~g-~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~----~ 109 (572)
||-..|.+.+...|.++...|..+..... ...... ..+ . +.+-..+...+..++..|+.+|..++..-. .
T Consensus 13 pl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 13 PLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp CHHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred CHHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 37789999999999999988877543211 111111 122 2 566678888899999999999998875311 1
Q ss_pred HH--HHHHcCChHHHHHH-HhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCCh
Q 008257 110 AK--VLIHAGILPPLVKD-LFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGP 186 (572)
Q Consensus 110 ~~--~iv~~G~i~~Lv~l-L~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~ 186 (572)
+. ...-...+|.|+.- |.+. ...++..|..++..++.... ....+++.++..+.+.+|
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~-----k~~~~~~a~~~l~~~~~~~~--------------~~~~~~e~l~~~l~~Knp 153 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSS-----RATTKTQSMSCILSLCGLDT--------------SITQSVELVIPFFEKKLP 153 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCC-----CHHHHHHHHHHHHHHHHTSS--------------SSHHHHHHHGGGGGCSCH
T ss_pred cchhHHHHHHHHHHHHHHHhcCc-----cHHHHHHHHHHHHHHHHhcC--------------cHHHHHHHHHHHHhccCH
Confidence 21 22234567777764 5443 36788888888888875321 113356777788888999
Q ss_pred hHHHHHHHHHHHccCC--CCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 008257 187 TIECKLLQVLVGLTSS--PTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMG 249 (572)
Q Consensus 187 ~~q~~a~~aL~~l~~~--~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~ 249 (572)
.++..++..|..+-.. ... ......+ ...++.+..+|.+.++.||..|..++..+-...+
T Consensus 154 kv~~~~l~~l~~~l~~fg~~~-~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 154 KLIAAAANCVYELMAAFGLTN-VNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT-CCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHhCCCc-CCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 9998888777655321 110 0011110 1245567788899999999999999987765544
No 95
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.98 E-value=0.42 Score=44.56 Aligned_cols=201 Identities=14% Similarity=0.221 Sum_probs=128.0
Q ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHh-------hhccCCCC---hHHHHHHHHHHhcCCCCcHHHHH
Q 008257 230 QNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIR-------VISENVGI---SKEQAAAVGLLAELPERDLGLTR 299 (572)
Q Consensus 230 ~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~-------lL~~~~~~---~~~~~~A~~~L~~L~~~~~~~~~ 299 (572)
+++.|+.|+.-|+.=.+ .-.+++-.+..+.|.+..|++ .+..+.=. +.--..|+..+..++. +++.+.
T Consensus 14 ~p~~Re~AL~eLsk~Re-~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~ 91 (268)
T 2fv2_A 14 SPETRENALLELSKKRE-SVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRS 91 (268)
T ss_dssp STTTHHHHHHHHHHHTT-TCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHH
T ss_pred CchhHHHHHHHHHHhhh-ccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-Ccchhh
Confidence 34457776555544322 224554456666566655532 23222210 1233567777777776 778889
Q ss_pred HHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHHHH
Q 008257 300 QMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKVQM 379 (572)
Q Consensus 300 ~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~ 379 (572)
.|+++...-.|.-+|.... + .+..+-++=..+|.++.+... +|++....+.+..++|..+..++.+ ++..|.
T Consensus 92 ~Fl~a~iplyLyPfL~t~s--k---~r~fE~LRLtsLGVIgaLvK~--dd~eVi~fLL~tEiiplCLrime~G-selSKt 163 (268)
T 2fv2_A 92 AFLAAHIPLFLYPFLHTVS--K---TRPFEYLRLTSLGVIGALVKT--DEQEVINFLLTTEIIPLCLRIMESG-SELSKT 163 (268)
T ss_dssp HHHHTTGGGGTHHHHHCCC--C---SHHHHHHHHHHHHHHHHHGGG--CCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHH
T ss_pred HHHHccchHHhhhhhcccc--C---CCcchhhhhhHHHHHHHHhcc--CcHHHHHHHHhhhHHHHHHHHHhhc-cHHHHH
Confidence 9999999988888987522 1 123444555677777777766 7999999999999999999999999 999999
Q ss_pred HHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhhhccchHHHHHh-hcCCCHh
Q 008257 380 VSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLLEGHAVEKLIAL-LDHTNEK 458 (572)
Q Consensus 380 ~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~~~g~i~~Lv~l-L~~~~~~ 458 (572)
.|...+..+-.++.-+. .+|.-...|..+ ...+..+|.- .+.+++.
T Consensus 164 vAtfIlqKIL~dd~GL~--------------------------------YiC~t~eRF~av-~~vL~~mV~~l~~~ps~R 210 (268)
T 2fv2_A 164 VATFILQKILLDDTGLA--------------------------------YICQTYERFSHV-AMILGKMVLQLSKEPSAR 210 (268)
T ss_dssp HHHHHHHHHHHSHHHHH--------------------------------HHTSSHHHHHHH-HHHHHHHHHHTTTSCCHH
T ss_pred HHHHHHHHHhccchhHH--------------------------------HHHccHHHHHHH-HHHHHHHHHHHhcCCChH
Confidence 99998887755432110 012112233211 1133344443 3567888
Q ss_pred HHHHHHHHHHHhhhc
Q 008257 459 VVEASLAALSTVIDD 473 (572)
Q Consensus 459 v~~~A~~aL~~l~~~ 473 (572)
......+....|+.+
T Consensus 211 LLKhiircYlRLsdn 225 (268)
T 2fv2_A 211 LLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcC
Confidence 888888888888854
No 96
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.27 E-value=0.38 Score=44.87 Aligned_cols=155 Identities=19% Similarity=0.251 Sum_probs=103.9
Q ss_pred HHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCC-----HHHHHHHHHHHHHcCCCCChhHHHHHhcccCChh
Q 008257 190 CKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQ-----NDLRLASIELIQNLSPHMGHELADALRGAVGQLG 264 (572)
Q Consensus 190 ~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~ 264 (572)
.+|+..|..++++++ .|..+.+++..-.|.++|+..+ +.+|-.++..++.|.+.++.++...+..+ ..+|
T Consensus 74 cnaLaLlQcvAshpe----tr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~t-Eiip 148 (268)
T 2fv2_A 74 CNALALLQCVASHPE----TRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTT-EIIP 148 (268)
T ss_dssp HHHHHHHHHHHHCTT----THHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHT-THHH
T ss_pred HHHHHHHHHHHcCcc----hhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhh-hHHH
Confidence 467777888998875 4888899999889999997554 36899999999999987778887787777 7999
Q ss_pred hHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHhC-CChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHh
Q 008257 265 SLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLDE-GAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVT 343 (572)
Q Consensus 265 ~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~-g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~ 343 (572)
..++.++.+++ --+..|..++..+-.++... +.+... .-+-.+...|..--..-. .....-+..+.+..-.+++
T Consensus 149 lCLrime~Gse--lSKtvAtfIlqKIL~dd~GL-~YiC~t~eRF~av~~vL~~mV~~l~--~~ps~RLLKhiircYlRLs 223 (268)
T 2fv2_A 149 LCLRIMESGSE--LSKTVATFILQKILLDDTGL-AYICQTYERFSHVAMILGKMVLQLS--KEPSARLLKHVVRCYLRLS 223 (268)
T ss_dssp HHHHHHHHSCH--HHHHHHHHHHHHHHHSHHHH-HHHTSSHHHHHHHHHHHHHHHHHTT--TSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccH--HHHHHHHHHHHHHhccchhH-HHHHccHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHh
Confidence 99999999995 67888888888876644444 334321 122222222211000000 0023345566666666666
Q ss_pred ccCCCChHHHHHHHH
Q 008257 344 FVLSDEPDAIALCCE 358 (572)
Q Consensus 344 ~~~~~~~~~~~~i~~ 358 (572)
+|+..++.+..
T Consensus 224 ----dn~rar~aL~~ 234 (268)
T 2fv2_A 224 ----DNPRAREALRQ 234 (268)
T ss_dssp ----TSHHHHHHHHH
T ss_pred ----cCHHHHHHHHH
Confidence 56776666654
No 97
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.21 E-value=0.16 Score=47.85 Aligned_cols=35 Identities=11% Similarity=0.038 Sum_probs=22.8
Q ss_pred ChHHHHHHHHcCchHHHHHHhccCCcHHHHHHHHHH
Q 008257 349 EPDAIALCCEHNLAALFIELLQSNGLDKVQMVSATA 384 (572)
Q Consensus 349 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~vk~~Aa~a 384 (572)
++..+..+...-..+.|..+++++ +..|+..++..
T Consensus 159 d~~VR~~aa~~l~~~ll~~ll~D~-d~~VR~aaa~~ 193 (244)
T 1lrv_A 159 DRQVRKLVAKRLPEESLGLMTQDP-EPEVRRIVASR 193 (244)
T ss_dssp CHHHHHHHHHHSCGGGGGGSTTCS-SHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHh
Confidence 445555555444445666777777 88888888765
No 98
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=93.75 E-value=12 Score=42.70 Aligned_cols=209 Identities=13% Similarity=0.100 Sum_probs=118.4
Q ss_pred CHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccC---CHHHHHHHHHHHHHhcc--Ccc----hhHHHHhhhH
Q 008257 8 NLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEG---PQETKLSLAAFLGDLAL--NSD----VKVLVARTVG 78 (572)
Q Consensus 8 ~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~---~~~~~~~aa~~L~~l~~--~~~----~k~~i~~~g~ 78 (572)
|+..++.|...|..+-.+++.. .....+|..+ +..+|..++..|.+... .++ .+..+.
T Consensus 21 d~~~r~~A~~~L~~~q~sp~aw---------~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr---- 87 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSSSTGW---------KICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIR---- 87 (980)
T ss_dssp CHHHHHHHHHHHHHHHHSTTHH---------HHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHcChhHH---------HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH----
Confidence 6677777777777776655432 3444555543 68899999998887543 344 444443
Q ss_pred HHHHHhccc-----CCHHHHHHHHHHHHHhhcC--CCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHh
Q 008257 79 SCLINIMKS-----GNMQAREAALKALNQISSC--EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVN 151 (572)
Q Consensus 79 ~~Lv~lL~s-----~~~~~~~~A~~aL~~Ls~~--~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~ 151 (572)
..|++++.. +...++...+.+|..+... ++.|. +.++-|+.++.+++ . .........+|..|..
T Consensus 88 ~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp-----~~i~~l~~~~~~~~---~-~~~~~~~LriL~~i~E 158 (980)
T 3ibv_A 88 DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWN-----DFFASLQGVIAASS---Q-SEFSNFYLKVLLSIGD 158 (980)
T ss_dssp HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHHHHHC---C-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCc-----hHHHHHHHHhcCCC---h-hHHHHHHHHHHHHhHH
Confidence 444444432 3456788888888888763 35543 45667777776531 1 1223333444443332
Q ss_pred cCCCCCccccCC---Cc-----cccchh---hhHHHHHHHHh----cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhc
Q 008257 152 SGHDFDSITVGP---DN-----QTLVSE---DIVHNLLHLIS----NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSS 216 (572)
Q Consensus 152 ~~~~~~~~~~~~---~~-----~~l~~~---~~i~~Lv~lL~----~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~ 216 (572)
.-.+.. ...+. .+ ..+... .+++.++.+|. +.++++...++.+|......-. ...+...
T Consensus 159 Ev~~~~-~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-----~~~i~~~ 232 (980)
T 3ibv_A 159 EIADSL-VLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-----INLIVNE 232 (980)
T ss_dssp HHCCCC-SCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-----HHHHHCH
T ss_pred HHHhcc-cccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-----HHhhhcc
Confidence 110100 00000 00 011111 12444444443 3677888899999988877533 2344556
Q ss_pred CChHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 008257 217 GATISLVQFVEAPQNDLRLASIELIQNLSP 246 (572)
Q Consensus 217 g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~ 246 (572)
.-++.+..+|.. ++++..|+.+|..+..
T Consensus 233 ~ll~~l~~~L~~--~~~r~~A~ecL~ei~~ 260 (980)
T 3ibv_A 233 PCMNLLYSFLQI--EELRCAACETMTEIVN 260 (980)
T ss_dssp HHHHHHHHHTTS--HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCC--hHHHHHHHHHHHHHHH
Confidence 677788888764 7899999999988864
No 99
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=92.97 E-value=0.47 Score=45.44 Aligned_cols=154 Identities=14% Similarity=0.078 Sum_probs=97.8
Q ss_pred chHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhh
Q 008257 361 LAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLL 440 (572)
Q Consensus 361 ~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~ 440 (572)
..+.+-..+.+. +..++..+..++..++........ ....+...
T Consensus 56 ~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~-----------------------------------~~~~~~~~ 99 (278)
T 4ffb_C 56 DPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSL-----------------------------------KNAHNITL 99 (278)
T ss_dssp CTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---C-----------------------------------CHHHHHHH
T ss_pred HHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhc-----------------------------------ccchhHHH
Confidence 345666778777 899999999999887642211000 00011111
Q ss_pred hccchHHHHH-hhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcc
Q 008257 441 EGHAVEKLIA-LLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRT 519 (572)
Q Consensus 441 ~~g~i~~Lv~-lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~ 519 (572)
-...++.|+. .|.++...++..|..++..++...... ..+ +..+...+ .+.++.++..++..|.+++..
T Consensus 100 ~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~----~~~-----~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 100 ISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI----TQS-----VELVIPFF-EKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS----HHH-----HHHHGGGG-GCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH----HHH-----HHHHHHHH-hccCHHHHHHHHHHHHHHHHH
Confidence 2346777885 588999999999999988877432111 111 23455566 589999999999888888743
Q ss_pred --hhh--hhhhcCCCCchHHHHHHhhcCCchhHHHHHHHHHhhcccC
Q 008257 520 --DDI--AYEVSGDPNVSTALVDAFQHADYRTRQIAERALKHIDKIP 562 (572)
Q Consensus 520 --~~~--~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~ 562 (572)
... ...... .+...+..++.+.|+.||..|..++.-+.+.-
T Consensus 170 fg~~~~~~k~~l~--~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 170 FGLTNVNVQTFLP--ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HTTTTCCHHHHHH--HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred hCCCcCCchhHHH--HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 110 000000 12235778899999999999999998887754
No 100
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=92.34 E-value=0.74 Score=44.83 Aligned_cols=213 Identities=10% Similarity=0.124 Sum_probs=132.7
Q ss_pred HcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhh-hH-HHHHH-hccc-CCHHHHHHHHHHHHHhhcCCC
Q 008257 34 ENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVART-VG-SCLIN-IMKS-GNMQAREAALKALNQISSCEP 108 (572)
Q Consensus 34 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~-g~-~~Lv~-lL~s-~~~~~~~~A~~aL~~Ls~~~~ 108 (572)
..+.+..|+..|..=+-+.|..++....++.. ..+.+....+. .- |-++. +++. ++++.--.+-..|+....++.
T Consensus 76 ~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~ 155 (341)
T 1upk_A 76 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEP 155 (341)
T ss_dssp HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHH
T ss_pred HhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHH
Confidence 44555555555555566666665555555433 11222111111 11 22222 2222 455666677788888888877
Q ss_pred cHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccc--hhhhHHHHHHHHhcCCh
Q 008257 109 SAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLV--SEDIVHNLLHLISNTGP 186 (572)
Q Consensus 109 ~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~--~~~~i~~Lv~lL~~~~~ 186 (572)
-.+.+...+.+-.+.+....++ -++-..|..++..|-..... .+. ..+. -..+....-.||.+++.
T Consensus 156 la~~iL~~~~f~~fF~yv~~~~-----FdiasDAf~TfkelLt~Hk~----lva---efL~~nyd~Ff~~y~~Ll~S~NY 223 (341)
T 1upk_A 156 LAKIILWSEQFYDFFRYVEMST-----FDIASDAFATFKDLLTRHKL----LSA---EFLEQHYDRFFSEYEKLLHSENY 223 (341)
T ss_dssp HHHHHHHSGGGGHHHHHTTCSS-----HHHHHHHHHHHHHHHHSSHH----HHH---HHHHHTHHHHHHHHHHHTTCSSH
T ss_pred HHHHHhccHHHHHHHHHhcCCC-----chHHHHHHHHHHHHHhccHH----HHH---HHHHHhHHHHHHHHHHHhcCCcc
Confidence 7888888888888888776543 67777788877776442110 000 0011 12356667788899999
Q ss_pred hHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcC--CCCChhHHHHHhc
Q 008257 187 TIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLS--PHMGHELADALRG 258 (572)
Q Consensus 187 ~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls--~~~~~~~~~~i~~ 258 (572)
-.+.++++.|..+-.++.+.....+-|.+..-+..+..+|+++...+|-.|.-++.-.. .+.+.++.+.+..
T Consensus 224 VTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~ 297 (341)
T 1upk_A 224 VTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLK 297 (341)
T ss_dssp HHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHH
Confidence 99999999999998887653333334445566888899999999999999988877665 2345566555544
No 101
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=91.73 E-value=0.77 Score=43.55 Aligned_cols=109 Identities=13% Similarity=0.156 Sum_probs=80.7
Q ss_pred chHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhh
Q 008257 361 LAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLL 440 (572)
Q Consensus 361 ~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~ 440 (572)
++|.|++-+-++ .+.+|..+-..+..+..-.+
T Consensus 133 ~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~----------------------------------------------- 164 (266)
T 2of3_A 133 FVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVG----------------------------------------------- 164 (266)
T ss_dssp HHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHC-----------------------------------------------
T ss_pred HHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCC-----------------------------------------------
Confidence 579999888777 78888887777765542110
Q ss_pred hccchHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCCh---HHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257 441 EGHAVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGI---KPILDVLLEKRTENLQRRAVWVVERIL 517 (572)
Q Consensus 441 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i---~~L~~lL~~~~~~~~~~~a~~~l~~l~ 517 (572)
-....+.+++-+.+.|.++++..+..+..+.... |.. ...++ +.+..++ +++|..+|..|..++..++
T Consensus 165 ~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~-----G~~---~~~~l~~~~~ia~ll-~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 165 PLKMTPMLLDALKSKNARQRSECLLVIEYYITNA-----GIS---PLKSLSVEKTVAPFV-GDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH-----CSG---GGGGGCHHHHHGGGG-GCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc-----CCC---ccccccchHHHHHHH-cCCCHHHHHHHHHHHHHHH
Confidence 1125566778889999999999999999887532 211 24578 9999999 6999999999999999888
Q ss_pred cc--hhhhhhh
Q 008257 518 RT--DDIAYEV 526 (572)
Q Consensus 518 ~~--~~~~~~~ 526 (572)
.+ +.....+
T Consensus 236 ~~~Gd~v~k~l 246 (266)
T 2of3_A 236 KFEGDQMWKAA 246 (266)
T ss_dssp HHHTTHHHHHH
T ss_pred HHhhHHHHHHH
Confidence 66 4555444
No 102
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=91.62 E-value=2.9 Score=39.59 Aligned_cols=183 Identities=14% Similarity=0.103 Sum_probs=114.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhc----ccCCHHHHHHHHHHHHHhhc---CCCcHH
Q 008257 39 QPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIM----KSGNMQAREAALKALNQISS---CEPSAK 111 (572)
Q Consensus 39 ~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL----~s~~~~~~~~A~~aL~~Ls~---~~~~~~ 111 (572)
+.+...|-+.+...+..+...|...... +...+... ...+++++ .+.+..+...++..|..+.. ..+++-
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~--~~~~~~~~-lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADT--SPRSLLSN-SDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHH--CHHHHHHT-HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhh--ChHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4555666666777677777777653321 22222111 12233333 36688888888888877642 222211
Q ss_pred HHHH-cCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHH
Q 008257 112 VLIH-AGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIEC 190 (572)
Q Consensus 112 ~iv~-~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~ 190 (572)
.-.+ .-.+|.|+.-+... ...+|+.+-.++..+... .-...+.+.++.-+++.+...+.
T Consensus 126 ~~~ea~~~lP~LveKlGd~-----k~~vR~~~r~il~~l~~v---------------~~~~~v~~~l~~g~ksKN~R~R~ 185 (266)
T 2of3_A 126 SQEEVSAFVPYLLLKTGEA-----KDNMRTSVRDIVNVLSDV---------------VGPLKMTPMLLDALKSKNARQRS 185 (266)
T ss_dssp CHHHHHHHHHHHHHGGGCS-----SHHHHHHHHHHHHHHHHH---------------HCHHHHHHHHHHGGGCSCHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCC-----hHHHHHHHHHHHHHHHHH---------------CCHHHHHHHHHHHHccCCHHHHH
Confidence 1111 23678888877532 367888888888777642 12244678888888888999998
Q ss_pred HHHHHHHHccCCCCccHHHHHHHHhcCCh---HHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhH
Q 008257 191 KLLQVLVGLTSSPTTVLSVVSAIKSSGAT---ISLVQFVEAPQNDLRLASIELIQNLSPHMGHEL 252 (572)
Q Consensus 191 ~a~~aL~~l~~~~~~~~~~~~~i~~~g~i---~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~ 252 (572)
.++..+..+-..... . ...++ +.+..++.+.|..||..|..++..+-.+.++.+
T Consensus 186 e~l~~l~~li~~~G~--~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 186 ECLLVIEYYITNAGI--S------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp HHHHHHHHHHHHHCS--G------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHhcCC--C------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 888777766432111 0 13478 999999999999999999988876544434444
No 103
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=89.63 E-value=1.9 Score=45.06 Aligned_cols=206 Identities=15% Similarity=0.112 Sum_probs=121.6
Q ss_pred cchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHh--------c--CChhHHHHHHHHHHHccCCCCc
Q 008257 136 MRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS--------N--TGPTIECKLLQVLVGLTSSPTT 205 (572)
Q Consensus 136 ~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~--------~--~~~~~q~~a~~aL~~l~~~~~~ 205 (572)
=++|.-||-.|..+.+......... + -......-+|+-+|. + ---+|++.++.+|..+ ..-..
T Consensus 188 WEiRHGAALGLREILR~hG~GAGR~-~-----~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~ 260 (800)
T 3oc3_A 188 WYKRHGAFLAFAAMFSEIDNGGDIQ-I-----RVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIG 260 (800)
T ss_dssp HHHHHHHHHHHHHHHHHCC----CC-C-----CCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSC
T ss_pred hhhhhHHHHHHHHHHHHhccCCcee-c-----cccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCCh
Confidence 4677778888887765432100000 0 011134444444442 1 1236899999999988 54322
Q ss_pred cHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHH
Q 008257 206 VLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVG 285 (572)
Q Consensus 206 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~ 285 (572)
+ ...+..|+..+..+.-++|-.++-.|+++.+--. .+. +.++.++.-|...++ +++..|+.
T Consensus 261 --e-------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~-----~Ld---~Vv~aVL~GL~D~DD--DVRAVAAe 321 (800)
T 3oc3_A 261 --P-------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVE-----DKD---GLCRKLVSLLSSPDE--DIKLLSAE 321 (800)
T ss_dssp --S-------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCC-----CHH---HHHHHHHHHTTCSSH--HHHHHHHH
T ss_pred --h-------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHH-----HHH---HHHHHHHhhcCCccc--HHHHHHHH
Confidence 1 4456666666677778999999999999921111 122 567888888888886 99999999
Q ss_pred HHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHH
Q 008257 286 LLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALF 365 (572)
Q Consensus 286 ~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L 365 (572)
+|.-++. .... . ..+..+..+|.+.. .. +....+++ ..+++|+.+......+ ...+|.|
T Consensus 322 tLiPIA~-p~~l-~-----~LL~iLWd~L~~LD--DL--SASTgSVM-dLLAkL~s~p~~a~~d---------p~LVPRL 380 (800)
T 3oc3_A 322 LLCHFPI-TDSL-D-----LVLEKCWKNIESEE--LI--SVSKTSNL-SLLTKIYRENPELSIP---------PERLKDI 380 (800)
T ss_dssp HHTTSCC-SSTH-H-----HHHHHHHHHHHTCC--SC--CTTHHHHH-HHHHHHHHHCTTCCCC---------SGGGGGT
T ss_pred Hhhhhcc-hhhH-H-----HHHHHHHHHhhhhc--cc--chhhHHHH-HHHHHHHcCCcccccC---------hHHHHHH
Confidence 9998882 2222 1 22345555665421 11 11122333 2444454443211112 2678999
Q ss_pred HHHhccCCcHHHHHHHHHHHHHhh
Q 008257 366 IELLQSNGLDKVQMVSATALENLS 389 (572)
Q Consensus 366 v~lL~~~~~~~vk~~Aa~aL~~ls 389 (572)
.-+|+++ -..||..+..+|..+.
T Consensus 381 ~PFLRHt-ITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 381 FPCFTSP-VPEVRTSILNMVKNLS 403 (800)
T ss_dssp GGGGTCS-SHHHHHHHHHHTTTCC
T ss_pred HhhhcCC-cHHHHHHHHHHHHHHH
Confidence 9999998 8889988888876654
No 104
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=89.61 E-value=31 Score=38.89 Aligned_cols=462 Identities=11% Similarity=0.077 Sum_probs=214.8
Q ss_pred CCCHHHHHHHHHHHHhhcc------CcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccC--cchhHHHHhhh
Q 008257 6 SENLLTVEKAEKTLANLEK------CENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALN--SDVKVLVARTV 77 (572)
Q Consensus 6 s~~~~~~~~A~~~L~~L~~------~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~--~~~k~~i~~~g 77 (572)
+.++.++..|+..|.+.-. .++.+..+.+. .++.+... ..++..++...+.++..++.. .+.. ..
T Consensus 69 ~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~-ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~~W-----p~ 141 (963)
T 2x19_B 69 DKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQ-LFTQITRF-ASGSKIVLTRLCVALASLALSMMPDAW-----PC 141 (963)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHH-HHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTTTS-----TT
T ss_pred CCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHH-HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCcccc-----ch
Confidence 4566667777777766532 12223333222 33333221 124677788888888877663 2211 13
Q ss_pred H-HHHHHhccc-----CCHHHHHHHHHHHHHhhcC---CC---cHHHHHH---cCChHHHHH----HHhccCCCCCCcch
Q 008257 78 G-SCLINIMKS-----GNMQAREAALKALNQISSC---EP---SAKVLIH---AGILPPLVK----DLFTVGSNHLPMRL 138 (572)
Q Consensus 78 ~-~~Lv~lL~s-----~~~~~~~~A~~aL~~Ls~~---~~---~~~~iv~---~G~i~~Lv~----lL~s~~~~~~~~~~ 138 (572)
. +.|++++++ .++..++.++..|..|+.. .. .++.-++ ...+|.++. ++.... .+..+
T Consensus 142 ~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~---~~~~~ 218 (963)
T 2x19_B 142 AVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPS---SPSCV 218 (963)
T ss_dssp HHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTT---CCHHH
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CchHH
Confidence 4 888888876 3666788899998888731 10 1111111 123444444 443321 11236
Q ss_pred HHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccH--HHHHHHHh-
Q 008257 139 KEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVL--SVVSAIKS- 215 (572)
Q Consensus 139 ~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~--~~~~~i~~- 215 (572)
...+..++......+. ........++.+++.+ .+++++..++.+|..+...+.... .....+..
T Consensus 219 ~~~~l~~l~~wi~~~~-----------~~~~~~~ll~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~ 285 (963)
T 2x19_B 219 RQKVLKCFSSWVQLEV-----------PLQDCEALIQAAFAAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPL 285 (963)
T ss_dssp HHHHHHHHHHHHTSSC-----------CGGGTHHHHHHHHHHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-----------CcccchHHHHHHHHHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHH
Confidence 6667766654433111 0112355677777776 367889999999998887543211 11111110
Q ss_pred -cCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHH------HHHhcccCChhhHHhhhccC-----CCChHHHHHH
Q 008257 216 -SGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELA------DALRGAVGQLGSLIRVISEN-----VGISKEQAAA 283 (572)
Q Consensus 216 -~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~------~~i~~~~g~l~~Lv~lL~~~-----~~~~~~~~~A 283 (572)
.+..+.+...+..++.+.....++++..+.......+. ..+. ..++.++.+...+ ++ ++...+
T Consensus 286 ~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~---~~l~~ll~~~~~~~~~~~~~--~v~~~~ 360 (963)
T 2x19_B 286 VLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFL---ALVNMIMFCTGIPGHYPVNE--TTSSLT 360 (963)
T ss_dssp HHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHH---HHHHHHHHHHTCSSCTTTTC--GGGGGG
T ss_pred HHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHH---HHHHHHHHHHcCCCCCCchh--hhhhhh
Confidence 01122232333444555555555666555422111110 1111 2455555555542 21 222222
Q ss_pred HHHHhcCCC----Cc----HHHHHHHHhCCChHHHHHHHhhh-cc-CCCC---CCcch-hh---HHHHHHHHHHHHhccC
Q 008257 284 VGLLAELPE----RD----LGLTRQMLDEGAFGLIFSRVKSI-QL-GETR---GSRFV-TP---FLEGLLSVLARVTFVL 346 (572)
Q Consensus 284 ~~~L~~L~~----~~----~~~~~~l~~~g~l~~Lv~lL~~~-~~-~~~~---~~~~~-~~---~~e~a~~aL~~l~~~~ 346 (572)
......++. .+ +.....+ . ..++.|+..+-.. .. .... ..... .. ....+...|..++...
T Consensus 361 l~fw~~l~~~~~~~~~~~~~~~~~~~-~-~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~ 438 (963)
T 2x19_B 361 LTFWYTLQDDILSFEAEKQAVYQQVY-R-PVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEML 438 (963)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHH-H-HHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHH-H-HHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 222222111 01 1111111 1 2333344332211 00 0000 00000 01 1112222222222110
Q ss_pred CCChHHHHHHHHcCchHHHHHHh----ccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCcccc
Q 008257 347 SDEPDAIALCCEHNLAALFIELL----QSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITG 422 (572)
Q Consensus 347 ~~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (572)
..+... -+++.+-+.+ .+. +...++.+..+++.++......
T Consensus 439 --~~~~l~-----~~~~~l~~~l~~~~~~~-~w~~~eaal~al~~i~~~~~~~--------------------------- 483 (963)
T 2x19_B 439 --GAELLS-----NLYDKLGRLLTSSEEPY-SWQHTEALLYGFQSIAETIDVN--------------------------- 483 (963)
T ss_dssp --THHHHH-----HHHHHHHHHHHTCCCSC-CHHHHHHHHHHHHHHTTSCCSS---------------------------
T ss_pred --cHHHHH-----HHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHHHhhcCch---------------------------
Confidence 011111 1123333444 334 6778888888888887532110
Q ss_pred ccccccCccCccchhhhhhccchHHHHHhh---cCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhh
Q 008257 423 LCRLHRGLCSLKETFCLLEGHAVEKLIALL---DHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLE 499 (572)
Q Consensus 423 ~c~~~~~~~~~~~~~~l~~~g~i~~Lv~lL---~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~ 499 (572)
+...++.+++.| .++++.++..++.+++.++..-. .....+ ...++.+++.|.
T Consensus 484 ------------------~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~---~~~~~l--~~vl~~l~~~l~- 539 (963)
T 2x19_B 484 ------------------YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLA---DHPVMI--NSVLPLVLHALG- 539 (963)
T ss_dssp ------------------CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHH---HCHHHH--TTTHHHHHHHTT-
T ss_pred ------------------hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHH---hCHHHH--HHHHHHHHHHhC-
Confidence 001222333332 33578899999999999885311 111222 246677777773
Q ss_pred cCCHHHHHHHHHHHHHHHcchhhhhhhcCC-CCchHHHHHHhhcC--CchhHHHHHHHHHhhcc
Q 008257 500 KRTENLQRRAVWVVERILRTDDIAYEVSGD-PNVSTALVDAFQHA--DYRTRQIAERALKHIDK 560 (572)
Q Consensus 500 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~Lv~ll~~~--~~~~~~~Aa~aL~~L~~ 560 (572)
+ +.++..|+.+|.+++. +++..+..- ..+...|.+++.++ +.+.+..+-.++..+..
T Consensus 540 ~--~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 540 N--PELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp C--GGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred C--chHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 3 7899999999999984 333333321 11223345556653 35677777777777654
No 105
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=89.29 E-value=4.7 Score=45.93 Aligned_cols=139 Identities=10% Similarity=0.049 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccc
Q 008257 88 GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQT 167 (572)
Q Consensus 88 ~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~ 167 (572)
.+-..++.|+.++..++....... ...++.++.++..-..++..+.++..++++|+.++..-.... +
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~--------~- 542 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP--------A- 542 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-------------
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH--------H-
Confidence 455678999999999986432211 234555665542211001247899999999999986311100 0
Q ss_pred cchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHHcC
Q 008257 168 LVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAP--QNDLRLASIELIQNLS 245 (572)
Q Consensus 168 l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~~Ls 245 (572)
.-..+++.|+..|. +.++..|+.++..++..... .+... -...+..|..++..+ +.+.+..+..++..++
T Consensus 543 -~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~--~l~p~--~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~ 614 (971)
T 2x1g_F 543 -YIPPAINLLVRGLN---SSMSAQATLGLKELCRDCQL--QLKPY--ADPLLNACHASLNTGRMKNSDSVRLMFSIGKLM 614 (971)
T ss_dssp -CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHH--HHHHH--HHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHH--hcccc--HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 12456777777773 78999999999999965321 22211 123455666777764 4678888888888876
Q ss_pred CC
Q 008257 246 PH 247 (572)
Q Consensus 246 ~~ 247 (572)
..
T Consensus 615 ~~ 616 (971)
T 2x1g_F 615 SL 616 (971)
T ss_dssp HT
T ss_pred Hh
Confidence 43
No 106
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=89.17 E-value=36 Score=38.99 Aligned_cols=108 Identities=14% Similarity=0.109 Sum_probs=63.8
Q ss_pred CcHHHHHHHccCCHHHHHHHHHHHHHhcc--C---cc----hh-----HHHHhh--hH-HHHHHhccc-CCHHHHHHHHH
Q 008257 37 RLQPLLTQILEGPQETKLSLAAFLGDLAL--N---SD----VK-----VLVART--VG-SCLINIMKS-GNMQAREAALK 98 (572)
Q Consensus 37 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~--~---~~----~k-----~~i~~~--g~-~~Lv~lL~s-~~~~~~~~A~~ 98 (572)
.++.|+..++ ++...+..+...|..+.. . .+ .| ..+... .+ +.+...|.. ++..++..+++
T Consensus 139 ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~ 217 (1049)
T 3m1i_C 139 FIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLE 217 (1049)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4677787776 454445555555555442 1 10 11 222221 22 444555543 46788999999
Q ss_pred HHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhc
Q 008257 99 ALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNS 152 (572)
Q Consensus 99 aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~ 152 (572)
++.+....-+ ...+.+...++.+.+.+.+ + +.++..|..+|..+...
T Consensus 218 ~l~~~l~wi~-~~~~~~~~ll~~l~~~~l~-~-----~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 218 SLLRYLHWIP-YRYIYETNILELLSTKFMT-S-----PDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHHHTTTSC-THHHHSSSHHHHHHTHHHH-S-----HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhCC-HHHHhhhhHHHHHHHHhCC-C-----HhHHHHHHHHHHHHHhC
Confidence 9988765322 2335566667777733322 1 68899999999999875
No 107
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=87.65 E-value=7.2 Score=37.68 Aligned_cols=153 Identities=15% Similarity=0.131 Sum_probs=85.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhh-hHHHHH----Hhccc-CCHHHHHHHHHHHHHhhcCCCcHHH
Q 008257 39 QPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVART-VGSCLI----NIMKS-GNMQAREAALKALNQISSCEPSAKV 112 (572)
Q Consensus 39 ~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~-g~~~Lv----~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~~ 112 (572)
..+.+++ +=+.+.+.-+...|+-++.++.....+.+. .+..++ ..+.+ +.+..+.-+++++.|+-.++..++.
T Consensus 106 ~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~ 184 (304)
T 3ebb_A 106 QILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKL 184 (304)
T ss_dssp HHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHH
T ss_pred HHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHH
Confidence 4444544 334444444444444344454444444433 233333 33332 4567799999999999998888877
Q ss_pred HHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHh-cCChhHHHH
Q 008257 113 LIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLIS-NTGPTIECK 191 (572)
Q Consensus 113 iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~-~~~~~~q~~ 191 (572)
+... ...+++.+.+... +....++..++..+.|++........ .+ ....++..+..++. ..++|...+
T Consensus 185 l~~~--~~~il~~~~~~~~-~~nknl~iA~ATl~~NlAv~~~~~~~--~~------~~~~ll~~l~~il~~~~d~EalyR 253 (304)
T 3ebb_A 185 MMSQ--RESLMSHAIELKS-GSNKNIHIALATLALNYSVCFHKDHN--IE------GKAQCLSLISTILEVVQDLEATFR 253 (304)
T ss_dssp HHHT--HHHHHHHHHGGGS-SCCHHHHHHHHHHHHHHHHHHHHSCC--HH------HHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHH--HHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHhhcCC--ch------HHHHHHHHHHHHHhccCCHHHHHH
Confidence 7642 2444444432210 12378999999999999863211000 00 01113333334443 357788888
Q ss_pred HHHHHHHccCCC
Q 008257 192 LLQVLVGLTSSP 203 (572)
Q Consensus 192 a~~aL~~l~~~~ 203 (572)
++.+|..+....
T Consensus 254 ~LvALGtL~~~~ 265 (304)
T 3ebb_A 254 LLVALGTLISDD 265 (304)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhCC
Confidence 888888887653
No 108
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=85.86 E-value=5.5 Score=38.75 Aligned_cols=143 Identities=10% Similarity=0.029 Sum_probs=112.9
Q ss_pred CCCHHHHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-Ccch-hHHHHhh--hH-HH
Q 008257 6 SENLLTVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDV-KVLVART--VG-SC 80 (572)
Q Consensus 6 s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~-k~~i~~~--g~-~~ 80 (572)
.++++..-.+-.+|+.....+..-+.+.+.+.+-.+..+...++=++-..|..++..+-. +... ...+... -. ..
T Consensus 134 Ye~~diAl~~G~mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~ 213 (341)
T 1upk_A 134 YESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSE 213 (341)
T ss_dssp GGSTTTHHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHH
T ss_pred hccchhHhHHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHH
Confidence 356667778888999999888888888899999999999999999998888888887643 2222 2223322 23 67
Q ss_pred HHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHH----HcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC
Q 008257 81 LINIMKSGNMQAREAALKALNQISSCEPSAKVLI----HAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG 153 (572)
Q Consensus 81 Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv----~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~ 153 (572)
.-.+|.|++-..++.+++.|+.|-.+..|...|. +..-+..++.+|++. +..+|..|..+.--.+.+.
T Consensus 214 y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-----sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 214 YEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-----SRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-----CHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-----hhchhhhhhhheeeeeeCC
Confidence 7789999999999999999999999988865554 556688899999865 3889999999988877654
No 109
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=85.57 E-value=8.9 Score=39.22 Aligned_cols=121 Identities=14% Similarity=0.146 Sum_probs=85.1
Q ss_pred ccCCHHHHHHHHHHHHHhcc-CcchhHHHHhhhHHHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHH
Q 008257 46 LEGPQETKLSLAAFLGDLAL-NSDVKVLVARTVGSCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVK 124 (572)
Q Consensus 46 ~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~g~~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~ 124 (572)
..|+...|+.||..+.+... .++. .+..+..+++++..++..+|..|++.|-.++.+ ++...+ +..|++
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~l----~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL~Q 107 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPEL----ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV-----ADILTQ 107 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGGG----HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHHHH
Confidence 45788999999999998766 3332 233458899999999999999999999999988 665444 457899
Q ss_pred HHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHH
Q 008257 125 DLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLV 197 (572)
Q Consensus 125 lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~ 197 (572)
+|.+. . +.-....-++|..+-.. -..+.+..+...+..++..++++++..|.
T Consensus 108 lLqtd----d-~~E~~~V~~sL~sllk~----------------Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 108 LLQTD----D-SAEFNLVNNALLSIFKM----------------DAKGTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp HTTCC----C-HHHHHHHHHHHHHHHHH----------------CHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHhcc----c-hHHHHHHHHHHHHHHhc----------------ChHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 99753 1 22222333444444332 22566777777777778888888887775
No 110
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=85.18 E-value=5.5 Score=38.54 Aligned_cols=117 Identities=13% Similarity=0.076 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHhhccCcchHHHHHHc--CCcHHHHHHHccCCHHHHHHHHHHHHHhccC-cchhHHHHhhhH-HHHH
Q 008257 7 ENLLTVEKAEKTLANLEKCENNVRQMAEN--GRLQPLLTQILEGPQETKLSLAAFLGDLALN-SDVKVLVARTVG-SCLI 82 (572)
Q Consensus 7 ~~~~~~~~A~~~L~~L~~~~~n~~~i~~~--g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~-~~~k~~i~~~g~-~~Lv 82 (572)
..|..+..++++++||..++..+..+.+. ..++.+...+.+.+..+|+.+|..+.|++.. ...+..-...-. ..+.
T Consensus 160 ~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~ 239 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLIS 239 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Confidence 34667888999999999998888887753 1222333334456788999999999998762 111111001112 4445
Q ss_pred Hhccc-CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHH
Q 008257 83 NIMKS-GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLV 123 (572)
Q Consensus 83 ~lL~s-~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv 123 (572)
.+++. .+.|....++-||++|...+.....+.+.=++...+
T Consensus 240 ~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v 281 (304)
T 3ebb_A 240 TILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQI 281 (304)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHG
T ss_pred HHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHH
Confidence 55543 578999999999999998765555555433333333
No 111
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=82.84 E-value=28 Score=34.74 Aligned_cols=155 Identities=13% Similarity=0.171 Sum_probs=90.7
Q ss_pred HhhhHHHHHHhccc-----------CCHHHHHHHHHHHHHhhcCCCcHHHHH-HcCChHHHHHHHhccCCCCCCcchHHH
Q 008257 74 ARTVGSCLINIMKS-----------GNMQAREAALKALNQISSCEPSAKVLI-HAGILPPLVKDLFTVGSNHLPMRLKEV 141 (572)
Q Consensus 74 ~~~g~~~Lv~lL~s-----------~~~~~~~~A~~aL~~Ls~~~~~~~~iv-~~G~i~~Lv~lL~s~~~~~~~~~~~~~ 141 (572)
...|...|++.|.. .+...+..+++||+.+..+......+. +..+|..|+..|.+.. +.++..
T Consensus 107 ~~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~-----~~~~~~ 181 (383)
T 3eg5_B 107 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAV-----PNMMID 181 (383)
T ss_dssp HHHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTS-----HHHHHH
T ss_pred HHccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCc-----hHHHHH
Confidence 33344899988852 234778899999999987766666555 6788999999987643 788999
Q ss_pred HHHHHHHHHhcCC--C-CCccccCCC--ccccchhhhHHHHHHHHhc-CChhHHHHHHHHHHHccCCCCcc---HHHHHH
Q 008257 142 SATILANVVNSGH--D-FDSITVGPD--NQTLVSEDIVHNLLHLISN-TGPTIECKLLQVLVGLTSSPTTV---LSVVSA 212 (572)
Q Consensus 142 aa~~L~nla~~~~--~-~~~~~~~~~--~~~l~~~~~i~~Lv~lL~~-~~~~~q~~a~~aL~~l~~~~~~~---~~~~~~ 212 (572)
+..+|+-+|..+. + +.. +++.- -+...+..-...++..|.+ .+.+.+..+...+-.+...+... ..+|..
T Consensus 182 aleLL~~lc~~~~~~gG~~~-VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~e 260 (383)
T 3eg5_B 182 AAKLLSALCILPQPEDMNER-VLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSE 260 (383)
T ss_dssp HHHHHHHHHTCCSSTTHHHH-HHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcCCcHHH-HHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999999987542 1 110 00000 0000112234556777765 46667666666555555554331 123333
Q ss_pred HHhcCChHHHHHHhcC-CCHHHHH
Q 008257 213 IKSSGATISLVQFVEA-PQNDLRL 235 (572)
Q Consensus 213 i~~~g~i~~Lv~lL~~-~~~~v~~ 235 (572)
+...|..+ ++.-|+. .++++..
T Consensus 261 f~~~Gl~~-il~~lr~~~~~~L~~ 283 (383)
T 3eg5_B 261 LMRLGLHQ-VLQELREIENEDMKV 283 (383)
T ss_dssp HHHTTHHH-HHHHHTTSCCHHHHH
T ss_pred HHHCChHH-HHHHHhcCCChhHHH
Confidence 43445444 4444554 3444433
No 112
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=81.22 E-value=5.7 Score=41.51 Aligned_cols=153 Identities=18% Similarity=0.205 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHhcc--CcchhHHHHhhhH-HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHH-HcCChHHHHHH
Q 008257 50 QETKLSLAAFLGDLAL--NSDVKVLVARTVG-SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLI-HAGILPPLVKD 125 (572)
Q Consensus 50 ~~~~~~aa~~L~~l~~--~~~~k~~i~~~g~-~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv-~~G~i~~Lv~l 125 (572)
..+|.-+|.+|+.+ . .++ ..+ ..|+..+....=+++..++-.|..+. +.+. -.+.+|.++.-
T Consensus 242 APVRETaAQtLGaL-~hLp~e-------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~------DLL~~Ld~Vv~aVL~G 307 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP-------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK------EFVEDKDGLCRKLVSL 307 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS-------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG------GGCCCHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHH-HhCChh-------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH------HHHHHHHHHHHHHHhh
Confidence 34678888888887 4 233 223 55666667777789999999999981 1111 24557777777
Q ss_pred HhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcC-----ChhHHHHHHHHHHHcc
Q 008257 126 LFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNT-----GPTIECKLLQVLVGLT 200 (572)
Q Consensus 126 L~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~-----~~~~q~~a~~aL~~l~ 200 (572)
|... +.+++..||.+|.-++. . . .-...+..+.+.|.+. +..--...+..|+...
T Consensus 308 L~D~-----DDDVRAVAAetLiPIA~-p---~-----------~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p 367 (800)
T 3oc3_A 308 LSSP-----DEDIKLLSAELLCHFPI-T---D-----------SLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYREN 367 (800)
T ss_dssp TTCS-----SHHHHHHHHHHHTTSCC-S---S-----------THHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHC
T ss_pred cCCc-----ccHHHHHHHHHhhhhcc-h---h-----------hHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCC
Confidence 7653 37999999999998871 1 1 1234566666666542 1122233444444443
Q ss_pred CCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 008257 201 SSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLS 245 (572)
Q Consensus 201 ~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls 245 (572)
..... ...-+|.|.+++++.-..||..++++|..+.
T Consensus 368 ~~a~~---------dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 368 PELSI---------PPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp TTCCC---------CSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred ccccc---------ChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 22111 2367899999999999999999999998887
No 113
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=79.98 E-value=10 Score=34.94 Aligned_cols=152 Identities=13% Similarity=0.165 Sum_probs=86.8
Q ss_pred hhHHHHHHhccc----C-------CHHHHHHHHHHHHHhhcCCCcHHHHH-HcCChHHHHHHHhccCCCCCCcchHHHHH
Q 008257 76 TVGSCLINIMKS----G-------NMQAREAALKALNQISSCEPSAKVLI-HAGILPPLVKDLFTVGSNHLPMRLKEVSA 143 (572)
Q Consensus 76 ~g~~~Lv~lL~s----~-------~~~~~~~A~~aL~~Ls~~~~~~~~iv-~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa 143 (572)
.|...|++.|.. + +.+.+..+++||+.+..+....+.+. +.+++..|+..|.++ .+.++..+.
T Consensus 43 ~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~-----~~~~r~~~l 117 (233)
T 2f31_A 43 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA-----VPNMMIDAA 117 (233)
T ss_dssp HHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTT-----SHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCC-----CchHHHHHH
Confidence 344888888763 1 34668899999999987766666665 677899999888764 378899999
Q ss_pred HHHHHHHhcCCC-C-CccccCC--CccccchhhhHHHHHHHHh-cCChhHHHHHHHHHHHccCCCCcc---HHHHHHHHh
Q 008257 144 TILANVVNSGHD-F-DSITVGP--DNQTLVSEDIVHNLLHLIS-NTGPTIECKLLQVLVGLTSSPTTV---LSVVSAIKS 215 (572)
Q Consensus 144 ~~L~nla~~~~~-~-~~~~~~~--~~~~l~~~~~i~~Lv~lL~-~~~~~~q~~a~~aL~~l~~~~~~~---~~~~~~i~~ 215 (572)
.+|+-+|..+.. . ...+.+. +-+...+..-...+++.++ +...+.+..+...+-.+...+... ..+|..+..
T Consensus 118 eLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~ 197 (233)
T 2f31_A 118 KLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMR 197 (233)
T ss_dssp HHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 999999875431 1 1100000 0000011123345666665 345566666665555555554431 123334444
Q ss_pred cCChHHHHHHhcC-CCHHH
Q 008257 216 SGATISLVQFVEA-PQNDL 233 (572)
Q Consensus 216 ~g~i~~Lv~lL~~-~~~~v 233 (572)
.| +..+++-++. .++++
T Consensus 198 ~G-l~~il~~l~~~~~~~L 215 (233)
T 2f31_A 198 LG-LHQVLQELREIENEDM 215 (233)
T ss_dssp TT-HHHHHHHHHHCCCHHH
T ss_pred CC-hHHHHHHHhccCCHHH
Confidence 44 4444444443 34443
No 114
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=79.35 E-value=34 Score=39.23 Aligned_cols=222 Identities=12% Similarity=0.127 Sum_probs=131.1
Q ss_pred cHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHHhcc-cCCHHHHHHHHHHHHHhhcC-----CCcHH
Q 008257 38 LQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVARTVGSCLINIMK-SGNMQAREAALKALNQISSC-----EPSAK 111 (572)
Q Consensus 38 i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~lL~-s~~~~~~~~A~~aL~~Ls~~-----~~~~~ 111 (572)
++.++..+-+++.+.|..|-..|..+-.+++.. +.+..+|. +.++.+|..|+..|.+.... ++..+
T Consensus 30 Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw--------~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~ 101 (1073)
T 3gjx_A 30 LDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAW--------TRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQC 101 (1073)
T ss_dssp HHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHH--------HHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHH--------HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHH
Confidence 455666666677777777777777655544321 44445554 45789999999999998752 22233
Q ss_pred HHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC--CCCCccccCCCccccchhhhHHHHHHHHhcCChhHH
Q 008257 112 VLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG--HDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIE 189 (572)
Q Consensus 112 ~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~--~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q 189 (572)
.-++...+..+.+.-..+..-..++.++.+.+.+++.++... ..|. ..++.++.++.+ ++...
T Consensus 102 ~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp--------------~fi~dLv~~~~~-~~~~~ 166 (1073)
T 3gjx_A 102 EGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWP--------------TFISDIVGASRT-SESLC 166 (1073)
T ss_dssp HHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCT--------------THHHHHHHHHHH-CHHHH
T ss_pred HHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhcc--------------HHHHHHHHHhCC-CHHHH
Confidence 334555555555543221000012456788889999998753 3343 467888887764 33444
Q ss_pred HHHHHHHHHccCC-CC------c---cHHHHHHHHhcCChHHHHHHh----c-CCCHHHHHHHHHHHHHcCCCCChhHHH
Q 008257 190 CKLLQVLVGLTSS-PT------T---VLSVVSAIKSSGATISLVQFV----E-APQNDLRLASIELIQNLSPHMGHELAD 254 (572)
Q Consensus 190 ~~a~~aL~~l~~~-~~------~---~~~~~~~i~~~g~i~~Lv~lL----~-~~~~~v~~~a~~~L~~Ls~~~~~~~~~ 254 (572)
...++.|..+... .. . ...++..+.+. ++.++.++ . ..++++...++.+|......-+-.
T Consensus 167 ~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~--- 241 (1073)
T 3gjx_A 167 QNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLG--- 241 (1073)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTH---
T ss_pred HHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHH---
Confidence 5566666655432 00 0 12345555554 56565554 2 456778888889999988775433
Q ss_pred HHhcccCChhhHH-hhhccCCCChHHHHHHHHHHhcCCC
Q 008257 255 ALRGAVGQLGSLI-RVISENVGISKEQAAAVGLLAELPE 292 (572)
Q Consensus 255 ~i~~~~g~l~~Lv-~lL~~~~~~~~~~~~A~~~L~~L~~ 292 (572)
.+... +.++.|+ .+|.+ ++.+..|+.+|..+..
T Consensus 242 ~i~~~-~ll~~L~~~~L~~----~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 242 YIFET-KLISTLIYKFLNV----PMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHSS-SHHHHHHHHTSSS----HHHHHHHHHHHHHHHH
T ss_pred Hhccc-hHHHHHHHHhcCC----hHHHHHHHHHHHHHHh
Confidence 35554 6677663 55532 2678888888877653
No 115
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=76.69 E-value=25 Score=32.38 Aligned_cols=131 Identities=7% Similarity=0.063 Sum_probs=84.7
Q ss_pred cchHHHHHHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHH-HHhcCChhHHHHHHHHHHHccC--CCCccHHHHHH
Q 008257 136 MRLKEVSATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLH-LISNTGPTIECKLLQVLVGLTS--SPTTVLSVVSA 212 (572)
Q Consensus 136 ~~~~~~aa~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~-lL~~~~~~~q~~a~~aL~~l~~--~~~~~~~~~~~ 212 (572)
.++|..|+..|+.+ .. ....++.+.. +-..+.-.|++.+..++..++. +++
T Consensus 85 deVR~~Av~lLg~~-~~-----------------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-------- 138 (240)
T 3l9t_A 85 YQVRMYAVFLFGYL-SK-----------------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-------- 138 (240)
T ss_dssp HHHHHHHHHHHHHT-TT-----------------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------
T ss_pred hHHHHHHHHHHHhc-cC-----------------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------
Confidence 68888888877766 21 0234555555 4345677899999988887764 221
Q ss_pred HHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCC
Q 008257 213 IKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPE 292 (572)
Q Consensus 213 i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~ 292 (572)
..++.+..++.+++..+|+.|...++--+...... .-.+ -.++.|-.+...++ ..+|....+.|..+++
T Consensus 139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k---~dp~--~ll~iL~~L~~D~s--~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK---ENPN--EAIRRIADLKEDVS--EYVRKSVGNALRDISK 207 (240)
T ss_dssp ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT---TCHH--HHHHHHHTTTTCSC--HHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh---cCHH--HHHHHHHHhcCChH--HHHHHHHHHHHHHHhh
Confidence 25778889999999999999987764322210000 0000 12344444444444 3889988899999999
Q ss_pred CcHHHHHHHHh
Q 008257 293 RDLGLTRQMLD 303 (572)
Q Consensus 293 ~~~~~~~~l~~ 303 (572)
.+++....+++
T Consensus 208 ~~Pd~V~~~~~ 218 (240)
T 3l9t_A 208 KFPDLVKIELK 218 (240)
T ss_dssp TCHHHHHHHHH
T ss_pred hCHHHHHHHHH
Confidence 99887766654
No 116
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=75.71 E-value=16 Score=36.44 Aligned_cols=140 Identities=10% Similarity=0.242 Sum_probs=88.2
Q ss_pred hhhHHHHHHHHhc-----------CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHH
Q 008257 171 EDIVHNLLHLISN-----------TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIE 239 (572)
Q Consensus 171 ~~~i~~Lv~lL~~-----------~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~ 239 (572)
.+++..|+.+|.. .+...+..++++|..+..... .....+....+|..|+..|.++.+.++..++.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~---G~~~vl~~~~~i~~l~~~L~s~~~~~~~~ale 184 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKF---GIKTMLETEEGILLLVRAMDPAVPNMMIDAAK 184 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHH---HHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchh---hHHHHHcChHHHHHHHHHhCCCchHHHHHHHH
Confidence 3456777777741 234677888888888876653 34445556778999999999999999999999
Q ss_pred HHHHcCCCC---C-hh-HHHHH------hcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCC--cHHHH----HHHH
Q 008257 240 LIQNLSPHM---G-HE-LADAL------RGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPER--DLGLT----RQML 302 (572)
Q Consensus 240 ~L~~Ls~~~---~-~~-~~~~i------~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~--~~~~~----~~l~ 302 (572)
+|..++... + .+ +-+++ .+. .-...+|..|.+... .+.+..++..|=.+... +.+.+ ..+.
T Consensus 185 LL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~-~RF~~lv~~L~~~~~-~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~ 262 (383)
T 3eg5_B 185 LLSALCILPQPEDMNERVLEAMTERAEMDEV-ERFQPLLDGLKSGTS-IALKVGCLQLINALITPAEELDFRVHIRSELM 262 (383)
T ss_dssp HHHHHHTCCSSTTHHHHHHHHHHHHHHHHTS-CTTHHHHHTTSTTSC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHhCcCcCCcHHHHHHHHHHHHHhCCC-CcHHHHHHHHHccCc-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 998887432 2 22 21222 222 568889999987654 36666666655433332 33332 4455
Q ss_pred hCCChHHHHHHHhh
Q 008257 303 DEGAFGLIFSRVKS 316 (572)
Q Consensus 303 ~~g~l~~Lv~lL~~ 316 (572)
..|..+.+-. |+.
T Consensus 263 ~~Gl~~il~~-lr~ 275 (383)
T 3eg5_B 263 RLGLHQVLQE-LRE 275 (383)
T ss_dssp HTTHHHHHHH-HTT
T ss_pred HCChHHHHHH-Hhc
Confidence 5555554444 554
No 117
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=74.88 E-value=13 Score=34.37 Aligned_cols=140 Identities=10% Similarity=0.252 Sum_probs=85.6
Q ss_pred hhhHHHHHHHHhc----C-------ChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHH
Q 008257 171 EDIVHNLLHLISN----T-------GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIE 239 (572)
Q Consensus 171 ~~~i~~Lv~lL~~----~-------~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~ 239 (572)
.+++..|+..|.. + +.+.+..++++|..+.....+ ....+...+++..|+..|.++++.++..++.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G---~~~vl~~~~~i~~l~~~L~s~~~~~r~~~le 118 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFG---IKTMLETEEGILLLVRAMDPAVPNMMIDAAK 118 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHH---HHHHHTSSSHHHHHHTTCCTTSHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHH---HHHHHcCcHHHHHHHHHhCCCCchHHHHHHH
Confidence 4556777777752 1 345677888888888776533 4445556678999999999999999999999
Q ss_pred HHHHcCCC---CC-hh-HHHHH------hcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCC--cHHH----HHHHH
Q 008257 240 LIQNLSPH---MG-HE-LADAL------RGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPER--DLGL----TRQML 302 (572)
Q Consensus 240 ~L~~Ls~~---~~-~~-~~~~i------~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~--~~~~----~~~l~ 302 (572)
+|..++.. .+ .+ +-+++ .+. .-...+|+.|.+.+. .+.+..++..+=.+... +.+. +..+.
T Consensus 119 LL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~-~RF~~lv~~l~~~~~-~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~ 196 (233)
T 2f31_A 119 LLSALCILPQPEDMNERVLEAMTERAEMDEV-ERFQPLLDGLKSGTS-IALKVGCLQLINALITPAEELDFRVHIRSELM 196 (233)
T ss_dssp HHHHHHTCSSSSCHHHHHHHHHHHHHHHHTS-CTTHHHHHTTSTTSC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCChHHHHHHHHHHHHHhCCc-chHHHHHHHHhcCCh-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 99887732 24 32 11222 222 456778888876554 36666666655333322 3232 24455
Q ss_pred hCCChHHHHHHHhh
Q 008257 303 DEGAFGLIFSRVKS 316 (572)
Q Consensus 303 ~~g~l~~Lv~lL~~ 316 (572)
..|..+.+ .-|+.
T Consensus 197 ~~Gl~~il-~~l~~ 209 (233)
T 2f31_A 197 RLGLHQVL-QELRE 209 (233)
T ss_dssp HTTHHHHH-HHHHH
T ss_pred HCChHHHH-HHHhc
Confidence 55544443 44443
No 118
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=73.94 E-value=1.3e+02 Score=34.41 Aligned_cols=244 Identities=11% Similarity=0.111 Sum_probs=126.0
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCCc----HHHHHHcCChH---HHHHHHhccCCCCCCcchHHHHHHHHHHHHh
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEPS----AKVLIHAGILP---PLVKDLFTVGSNHLPMRLKEVSATILANVVN 151 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~----~~~iv~~G~i~---~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~ 151 (572)
-.|+++|+.-+.+.-..... .+...+.. .+.+..+|--+ .+.+++.+.. .. ...|+++|.....
T Consensus 314 ~~Lv~~lR~~~~e~L~~l~~---~~~~~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~-----l~-~~ea~~~l~~~~~ 384 (1056)
T 1lsh_A 314 LRLTAFLRNVDAGVLQSIWH---KLHQQKDYRRWILDAVPAMATSEALLFLKRTLASEQ-----LT-SAEATQIVASTLS 384 (1056)
T ss_dssp HHHHHHHTTSCHHHHHHHHH---HHTTSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTC-----SC-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHH---HHhccHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCC-----CC-HHHHHHHHHHhhc
Confidence 45777787766544332222 22111111 23444555544 4445555431 22 2346676665443
Q ss_pred cCCCCCccccCCCccccchhhhHHHHHHHHhc----CChhHHHHHHHHHHHc----cCCCCc-cHHHHHHHHhcCChHHH
Q 008257 152 SGHDFDSITVGPDNQTLVSEDIVHNLLHLISN----TGPTIECKLLQVLVGL----TSSPTT-VLSVVSAIKSSGATISL 222 (572)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~----~~~~~q~~a~~aL~~l----~~~~~~-~~~~~~~i~~~g~i~~L 222 (572)
.. --....+..+..++.+ ..+.++..+.-++..+ |..... ..+.... ....|
T Consensus 385 ~~--------------~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~-----i~~~l 445 (1056)
T 1lsh_A 385 NQ--------------QATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQP-----LHDLL 445 (1056)
T ss_dssp TC--------------CCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHH-----HHHHH
T ss_pred cC--------------CCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH-----HHHHH
Confidence 21 0224567778888865 3555666665555444 332110 0111111 12234
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhcc-----CCCChHHHHHHHHHHhcCCCCcHHH
Q 008257 223 VQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISE-----NVGISKEQAAAVGLLAELPERDLGL 297 (572)
Q Consensus 223 v~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~-----~~~~~~~~~~A~~~L~~L~~~~~~~ 297 (572)
.+.+...+.+-+..++++|.|+... ..++.|.+++.. .+....++.+|+++|.+++...+..
T Consensus 446 ~~~~~~~~~~~~~~~LkaLGN~g~p-------------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~ 512 (1056)
T 1lsh_A 446 SQSSDRAKEEEIVLALKALGNAGQP-------------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK 512 (1056)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCG-------------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH
T ss_pred HHHHhcCChHHHHHHHHHhhccCCh-------------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH
Confidence 4455667777788889999998632 234555555532 1111368889999999998765544
Q ss_pred HHHHHhCCChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHHcCchHHHHHHhccCCcHHH
Q 008257 298 TRQMLDEGAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCEHNLAALFIELLQSNGLDKV 377 (572)
Q Consensus 298 ~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v 377 (572)
.+ +.++.+..+.. ...+++-.|...|.+. +|... .+..+...+....+.+|
T Consensus 513 v~--------~il~~i~~n~~--------e~~EvRiaA~~~Lm~t------~P~~~-------~l~~ia~~l~~E~~~QV 563 (1056)
T 1lsh_A 513 VQ--------EIVLPIFLNVA--------IKSELRIRSCIVFFES------KPSVA-------LVSMVAVRLRREPNLQV 563 (1056)
T ss_dssp HH--------HHHHHHHHCTT--------SCHHHHHHHHHHHHHT------CCCHH-------HHHHHHHHHTTCSCHHH
T ss_pred HH--------HHHHHHhcCCC--------CChHHHHHHHHHHHHH------CcCHH-------HHHHHHHHHhhCchHHH
Confidence 33 34556665421 3456666666665542 23211 12334444554336666
Q ss_pred HHHHHHHHHHhhhhc
Q 008257 378 QMVSATALENLSLES 392 (572)
Q Consensus 378 k~~Aa~aL~~ls~~~ 392 (572)
....-..|.+++.+.
T Consensus 564 ~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 564 ASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcC
Confidence 666666666666544
No 119
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=73.83 E-value=5.5 Score=40.72 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=68.2
Q ss_pred CCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHHcchhhhhhhcCCCCch
Q 008257 454 HTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERILRTDDIAYEVSGDPNVS 533 (572)
Q Consensus 454 ~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~ 533 (572)
.++++.+.-|+.-+..+..+-++.+ ..+|..+++|. +..|..+|..|...|-.+|.+ +....+.
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~--------~~Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~-~~i~kia------ 102 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELA--------DSAINAQLDLC-EDEDVSIRRQAIKELPQFATG-ENLPRVA------ 102 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGH--------HHHHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT-TCHHHHH------
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhH--------HHHHHHHHHHH-hcccHHHHHHHHHhhHHHhhh-hhhhhHH------
Confidence 3568888899999999887644222 23677888988 788999999999988888876 4333333
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHhhcc
Q 008257 534 TALVDAFQHADYRTRQIAERALKHIDK 560 (572)
Q Consensus 534 ~~Lv~ll~~~~~~~~~~Aa~aL~~L~~ 560 (572)
-.|+++|+..++.....+.++|..|-+
T Consensus 103 DvL~QlLqtdd~~E~~~V~~sL~sllk 129 (507)
T 3u0r_A 103 DILTQLLQTDDSAEFNLVNNALLSIFK 129 (507)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHh
Confidence 378999998888888888888777655
No 120
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=73.07 E-value=28 Score=33.95 Aligned_cols=137 Identities=8% Similarity=0.044 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhhccCcchHHHHHHcCCcHHHHHHHccCCHHHHHHHHHHHHHhccCcchhHHHH-hhhH-HHHHHhcc-c
Q 008257 11 TVEKAEKTLANLEKCENNVRQMAENGRLQPLLTQILEGPQETKLSLAAFLGDLALNSDVKVLVA-RTVG-SCLINIMK-S 87 (572)
Q Consensus 11 ~~~~A~~~L~~L~~~~~n~~~i~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~~~~k~~i~-~~g~-~~Lv~lL~-s 87 (572)
+...+-.+|.-|-++...++-++++.++........-++.++-+.....|...+.. .. -... -... |.++..+. +
T Consensus 259 VvtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDa-ks-L~~t~L~e~LPFi~~~i~~h 336 (619)
T 3c2g_A 259 VIIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDA-KA-LAKTPLENILPFLLRLIEIH 336 (619)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTC-GG-GGTSCCTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecch-HH-HhhccccccchHHHHHhccC
Confidence 44456667777777666789999999999998888888877765555555433221 11 1111 1235 88888776 5
Q ss_pred CCHHHHHHHHHHHHHhhcCCCc-HHHHHHcCChHHHHHHHhccC-CCCCC-cchHHHHHHHHHHH
Q 008257 88 GNMQAREAALKALNQISSCEPS-AKVLIHAGILPPLVKDLFTVG-SNHLP-MRLKEVSATILANV 149 (572)
Q Consensus 88 ~~~~~~~~A~~aL~~Ls~~~~~-~~~iv~~G~i~~Lv~lL~s~~-~~~~~-~~~~~~aa~~L~nl 149 (572)
++.++.-...+-|.|...+..- ++..+..|+|+.|-....... -++.. -.-|..|+.+++|-
T Consensus 337 ~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 337 PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 7788899999999999988765 555569999999998775321 00111 12244566666654
No 121
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=71.37 E-value=85 Score=31.20 Aligned_cols=152 Identities=13% Similarity=0.171 Sum_probs=93.6
Q ss_pred hhhHHHHHHhccc----C-------CHHHHHHHHHHHHHhhcCCCcHHHHH-HcCChHHHHHHHhccCCCCCCcchHHHH
Q 008257 75 RTVGSCLINIMKS----G-------NMQAREAALKALNQISSCEPSAKVLI-HAGILPPLVKDLFTVGSNHLPMRLKEVS 142 (572)
Q Consensus 75 ~~g~~~Lv~lL~s----~-------~~~~~~~A~~aL~~Ls~~~~~~~~iv-~~G~i~~Lv~lL~s~~~~~~~~~~~~~a 142 (572)
..|...|++.|.. + +...+..+++||+.|..+......+. ..++|..|+..|.+. .+.++..+
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~-----~~~~r~~v 120 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA-----VPNMMIDA 120 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTT-----SHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCC-----CchHHHHH
Confidence 3344888888752 1 34668899999999987766665555 677899999888754 26788889
Q ss_pred HHHHHHHHhcCCCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHH
Q 008257 143 ATILANVVNSGHDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISL 222 (572)
Q Consensus 143 a~~L~nla~~~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L 222 (572)
..+|+.+|..+.. + | ....++.++-.. ....+..-...|
T Consensus 121 leLL~alc~~~~~--------~-------G---------------~~~~VL~Al~~~-----------~~~~e~~RF~~l 159 (386)
T 2bnx_A 121 AKLLSALCILPQP--------E-------D---------------MNERVLEAMTER-----------AEMDEVERFQPL 159 (386)
T ss_dssp HHHHHHHHTCCSS--------T-------T---------------HHHHHHHHHHHH-----------HHHHTSCTTHHH
T ss_pred HHHHHHHHcCCCC--------C-------C---------------hHHHHHHHHHHH-----------HHhCchhhHHHH
Confidence 9999988864310 0 1 112222333221 112345567788
Q ss_pred HHHhcC-CCHHHHHHHHHHHHHcCCCCC-hh----HHHHHhcccCChhhHHhhhccCC
Q 008257 223 VQFVEA-PQNDLRLASIELIQNLSPHMG-HE----LADALRGAVGQLGSLIRVISENV 274 (572)
Q Consensus 223 v~lL~~-~~~~v~~~a~~~L~~Ls~~~~-~~----~~~~i~~~~g~l~~Lv~lL~~~~ 274 (572)
|+.+.. .+.+.+..++..+..+....+ -+ ++..+.. -|+..++.-|+...
T Consensus 160 v~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~--~GL~~il~~Lr~~~ 215 (386)
T 2bnx_A 160 LDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMR--LGLHQVLQELREIE 215 (386)
T ss_dssp HHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH--TTHHHHHHHHTTCC
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH--CChHHHHHHHhccC
Confidence 888874 446777777777777664422 12 2233444 35666667776544
No 122
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=70.97 E-value=16 Score=41.68 Aligned_cols=144 Identities=7% Similarity=-0.044 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCC---ChHHHHHHHHHHhcCCCCcHHHHHHHH-hC
Q 008257 229 PQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVG---ISKEQAAAVGLLAELPERDLGLTRQML-DE 304 (572)
Q Consensus 229 ~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~---~~~~~~~A~~~L~~L~~~~~~~~~~l~-~~ 304 (572)
.+-..++.++++++.++.+...+.-+.+.. ..++.|+.++..... ...++..++++|+..+. .+. ..
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~--~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~-------wl~~~~ 535 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVV--TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPR-------FLKAHW 535 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHH-------HHHHCH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHH--HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHH-------HHhccH
Confidence 356889999999999998754432123333 378889998864221 11344456688887643 111 22
Q ss_pred CChHHHHHHHhhhccCCCCCCcchhhHHHHHHHHHHHHhccCCCChHHHHHHHH------cCchHHHHHHhcc---CCcH
Q 008257 305 GAFGLIFSRVKSIQLGETRGSRFVTPFLEGLLSVLARVTFVLSDEPDAIALCCE------HNLAALFIELLQS---NGLD 375 (572)
Q Consensus 305 g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l~~~~~~~~~~~~~i~~------~g~i~~Lv~lL~~---~~~~ 375 (572)
..++++++.|-..-. ..++.+++.|++++.+++. +++..+.. ...++.+++.+.. ..++
T Consensus 536 ~~L~~vl~~L~~~l~------~~~~~v~~~A~~al~~l~~------~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~ 603 (1023)
T 4hat_C 536 NFLRTVILKLFEFMH------ETHEGVQDMACDTFIKIVQ------KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQP 603 (1023)
T ss_dssp HHHHHHHHHHHHHTT------CSCHHHHHHHHHHHHHHHH------HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHhh------cCCHHHHHHHHHHHHHHHH------HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCH
Confidence 345666655543110 0245689999999999983 33333332 1123333332222 1144
Q ss_pred HHHHHHHHHHHHhhhhcc
Q 008257 376 KVQMVSATALENLSLESK 393 (572)
Q Consensus 376 ~vk~~Aa~aL~~ls~~~~ 393 (572)
.....+..|++.+....+
T Consensus 604 ~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 604 QQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 555666667776665443
No 123
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=69.90 E-value=27 Score=34.87 Aligned_cols=139 Identities=10% Similarity=0.254 Sum_probs=86.7
Q ss_pred hhHHHHHHHHhc----C-------ChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHH
Q 008257 172 DIVHNLLHLISN----T-------GPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIEL 240 (572)
Q Consensus 172 ~~i~~Lv~lL~~----~-------~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~ 240 (572)
+++..|+..|.. + +.+.+..++++|..+.....+ ....+....++..|+..|.++.+.++..++.+
T Consensus 47 ~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~G---l~~vl~~~~~i~~l~~sL~s~~~~~r~~vleL 123 (386)
T 2bnx_A 47 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFG---IKTMLETEEGILLLVRAMDPAVPNMMIDAAKL 123 (386)
T ss_dssp HHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHH---HHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHH---HHHHHcCcHHHHHHHHHhCCCCchHHHHHHHH
Confidence 456666666641 1 345677888999888877543 44455667889999999999999999999998
Q ss_pred HHHcCCCC---C-hh-HHHHH------hcccCChhhHHhhhccCCCChHHHHHHHHHHhcCCCC--cHH----HHHHHHh
Q 008257 241 IQNLSPHM---G-HE-LADAL------RGAVGQLGSLIRVISENVGISKEQAAAVGLLAELPER--DLG----LTRQMLD 303 (572)
Q Consensus 241 L~~Ls~~~---~-~~-~~~~i------~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~--~~~----~~~~l~~ 303 (572)
|..+|... + .. +-+++ .+. .-...||+.|.+... .+.+..++..|=.+... +.+ .+..|..
T Consensus 124 L~alc~~~~~~G~~~~VL~Al~~~~~~~e~-~RF~~lv~~l~~~~~-~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~ 201 (386)
T 2bnx_A 124 LSALCILPQPEDMNERVLEAMTERAEMDEV-ERFQPLLDGLKSGTS-IALKVGCLQLINALITPAEELDFRVHIRSELMR 201 (386)
T ss_dssp HHHHHTCCSSTTHHHHHHHHHHHHHHHHTS-CTTHHHHHHTSTTSC-HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCChHHHHHHHHHHHHHhCch-hhHHHHHHHHHcCCh-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 88887432 3 22 11121 222 457779998876554 36776666655433332 223 3345556
Q ss_pred CCChHHHHHHHhh
Q 008257 304 EGAFGLIFSRVKS 316 (572)
Q Consensus 304 ~g~l~~Lv~lL~~ 316 (572)
.|..+.+ .-|+.
T Consensus 202 ~GL~~il-~~Lr~ 213 (386)
T 2bnx_A 202 LGLHQVL-QELRE 213 (386)
T ss_dssp TTHHHHH-HHHTT
T ss_pred CChHHHH-HHHhc
Confidence 5555554 45554
No 124
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=69.20 E-value=1.6e+02 Score=33.39 Aligned_cols=208 Identities=14% Similarity=0.149 Sum_probs=122.6
Q ss_pred CHHHHHHHHHHHHHhccCcchhHHHHhhhH-HHHHHhcccC---CHHHHHHHHHHHHHhhc--CCC-c--HHHHHHcCCh
Q 008257 49 PQETKLSLAAFLGDLALNSDVKVLVARTVG-SCLINIMKSG---NMQAREAALKALNQISS--CEP-S--AKVLIHAGIL 119 (572)
Q Consensus 49 ~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~-~~Lv~lL~s~---~~~~~~~A~~aL~~Ls~--~~~-~--~~~iv~~G~i 119 (572)
+.+.|.+|-..|..+-.++ ++ .....+|... ++++|..|+..|.+.-. .++ + ...-+..-.+
T Consensus 21 d~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll 91 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSSS---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVW 91 (980)
T ss_dssp CHHHHHHHHHHHHHHHHST---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCh---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHH
Confidence 4666666666666443322 24 6666777653 68999999999987664 222 0 2223333334
Q ss_pred HHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcC--CCCCccccCCCccccchhhhHHHHHHHHhcCCh-hHHHHHHHHH
Q 008257 120 PPLVKDLFTVGSNHLPMRLKEVSATILANVVNSG--HDFDSITVGPDNQTLVSEDIVHNLLHLISNTGP-TIECKLLQVL 196 (572)
Q Consensus 120 ~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~--~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~-~~q~~a~~aL 196 (572)
..+.+ ......+.-++.+.+.+|..++... ..|. +.++.++.++.++++ ......+++|
T Consensus 92 ~~l~~----~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp--------------~~i~~l~~~~~~~~~~~~~~~~LriL 153 (980)
T 3ibv_A 92 SYIKE----LSFLDEPAYISNAVQHLLTLLFLQLYPSNWN--------------DFFASLQGVIAASSQSEFSNFYLKVL 153 (980)
T ss_dssp HHHHH----CCSTTSCTHHHHHHHHHHHHHHHHHTTTTCT--------------THHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHH----hcCCCCcHHHHHHHHHHHHHHHHHhCcccCc--------------hHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 44333 1101234678999999999998753 4454 478889999886544 4555666776
Q ss_pred HHccC----C--CCcc------HHHHHHHHhcC---ChHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCChhHHHHHh
Q 008257 197 VGLTS----S--PTTV------LSVVSAIKSSG---ATISLVQFVE----APQNDLRLASIELIQNLSPHMGHELADALR 257 (572)
Q Consensus 197 ~~l~~----~--~~~~------~~~~~~i~~~g---~i~~Lv~lL~----~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~ 257 (572)
..+.. . +... ..+++.|++.. .++....+|. +.++.++..++.+|.......+-. .+.
T Consensus 154 ~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~---~i~ 230 (980)
T 3ibv_A 154 LSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININ---LIV 230 (980)
T ss_dssp HHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHH---HHH
T ss_pred HHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHH---hhh
Confidence 63322 1 1110 12244555431 1333344443 367788888888887777654333 344
Q ss_pred cccCChhhHHhhhccCCCChHHHHHHHHHHhcCC
Q 008257 258 GAVGQLGSLIRVISENVGISKEQAAAVGLLAELP 291 (572)
Q Consensus 258 ~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~ 291 (572)
.. ..++.+.++|.. + +.+..|+.+|..+.
T Consensus 231 ~~-~ll~~l~~~L~~--~--~~r~~A~ecL~ei~ 259 (980)
T 3ibv_A 231 NE-PCMNLLYSFLQI--E--ELRCAACETMTEIV 259 (980)
T ss_dssp CH-HHHHHHHHHTTS--H--HHHHHHHHHHHHHH
T ss_pred cc-hHHHHHHHHcCC--h--HHHHHHHHHHHHHH
Confidence 44 678888888865 2 67777888776653
No 125
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=63.97 E-value=90 Score=36.33 Aligned_cols=208 Identities=13% Similarity=0.138 Sum_probs=111.4
Q ss_pred CHHHHHHHHHHHHHhccCcchhHHHHhhhHHHHHH-hc-ccCCHHHHHHHHHHHHHhhcC-----CCcHHHHHHcCChHH
Q 008257 49 PQETKLSLAAFLGDLALNSDVKVLVARTVGSCLIN-IM-KSGNMQAREAALKALNQISSC-----EPSAKVLIHAGILPP 121 (572)
Q Consensus 49 ~~~~~~~aa~~L~~l~~~~~~k~~i~~~g~~~Lv~-lL-~s~~~~~~~~A~~aL~~Ls~~-----~~~~~~iv~~G~i~~ 121 (572)
+.+.|..|-..|..+..+++ +...+.. +. .+.++.+|..|+..|.+.... ++..+.-++..
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p~--------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~---- 93 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKCP--------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNS---- 93 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHCT--------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHH----
T ss_pred ChHHHHHHHHHHHHHHhCch--------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH----
Confidence 45566667666765433221 2333333 33 456788999999999987632 22222333333
Q ss_pred HHHHHhccCCC--CCCcchHHHHHHHHHHHHhcC--CCCCccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHH
Q 008257 122 LVKDLFTVGSN--HLPMRLKEVSATILANVVNSG--HDFDSITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLV 197 (572)
Q Consensus 122 Lv~lL~s~~~~--~~~~~~~~~aa~~L~nla~~~--~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~ 197 (572)
|++++.+...+ +.+..++...+.+++.++..+ ..|. +.++.|+.++.+ ++.....++.+|.
T Consensus 94 ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp--------------~ll~~L~~~~~~-~~~~~e~~L~iL~ 158 (1204)
T 3a6p_A 94 VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWP--------------DMLIELDTLSKQ-GETQTELVMFILL 158 (1204)
T ss_dssp HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCT--------------THHHHHHHHHHT-CHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccch--------------HHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence 34444322100 124788999999999998763 2343 478889998876 4555667777777
Q ss_pred HccCC---CCc--c---HHHHHHHHhcCChHHHHH----HhcC-------------------CCHHHHHHHHHHHHHcCC
Q 008257 198 GLTSS---PTT--V---LSVVSAIKSSGATISLVQ----FVEA-------------------PQNDLRLASIELIQNLSP 246 (572)
Q Consensus 198 ~l~~~---~~~--~---~~~~~~i~~~g~i~~Lv~----lL~~-------------------~~~~v~~~a~~~L~~Ls~ 246 (572)
.++.. ... . ...+..+.+. ++.++. .++. .+..++..++.++.+...
T Consensus 159 ~L~Eev~~~~~~~~~r~~~l~~~l~~~--~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~ 236 (1204)
T 3a6p_A 159 RLAEDVVTFQTLPPQRRRDIQQTLTQN--MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYID 236 (1204)
T ss_dssp HHHHHHHTSCCSCHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHccccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHh
Confidence 76532 110 0 1122233333 444433 3322 123456666666665554
Q ss_pred CCChhHHHHHhccc-CChhhHHhhhccCCCChHHHHHHHHHHhcCCC
Q 008257 247 HMGHELADALRGAV-GQLGSLIRVISENVGISKEQAAAVGLLAELPE 292 (572)
Q Consensus 247 ~~~~~~~~~i~~~~-g~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~ 292 (572)
..+.. .+.+.. ..++.+..++.. + +.+..|+.+|..+..
T Consensus 237 Wi~~~---~i~~~~~~ll~~l~~~l~~--~--~lr~~A~ecL~~i~s 276 (1204)
T 3a6p_A 237 WVSMS---HITAENCKLLEILCLLLNE--Q--ELQLGAAECLLIAVS 276 (1204)
T ss_dssp TSCHH---HHHTTTSHHHHHHHHGGGC--T--TTHHHHHHHHHHHHT
T ss_pred ccCHH---HHHhccchHHHHHHHHcCC--H--HHHHHHHHHHHHHHh
Confidence 43322 233220 145555555543 2 567777887777654
No 126
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=59.86 E-value=22 Score=33.98 Aligned_cols=148 Identities=16% Similarity=0.251 Sum_probs=92.1
Q ss_pred HHHHHhcccC------CHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhc
Q 008257 79 SCLINIMKSG------NMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNS 152 (572)
Q Consensus 79 ~~Lv~lL~s~------~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~ 152 (572)
...-++++++ +.+.-+.|+.-|..+|.+-..--.|++.. .+.|-.++... ..++.+++.|+.+++..-++
T Consensus 25 ~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~---~~~~~~rE~aarII~ssLRN 100 (315)
T 3qml_C 25 KEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNE---NLPLTLRELSTRVITSCLRN 100 (315)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCT---TSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhc---cCChhHHHHHHHHHHHHHcc
Confidence 3445566666 34456889999999998776656666432 45555555322 23578999999999988776
Q ss_pred CCCCCccccCCCccccchhhhHHHHHHHHhc-------CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHH
Q 008257 153 GHDFDSITVGPDNQTLVSEDIVHNLLHLISN-------TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQF 225 (572)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~~~i~~Lv~lL~~-------~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~l 225 (572)
++.--+.+.+. -...+..+..-|.. ....++..-+.+|..|..++.. . ...++..|.++
T Consensus 101 NP~Al~~V~~~------~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-----~~~~m~~L~~l 166 (315)
T 3qml_C 101 NPPVVEFINES------FPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-----PIYSTVVLQNV 166 (315)
T ss_dssp CHHHHHHHHHH------CTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C-------CCHHHHHHH
T ss_pred CHHHHHHHHHh------ChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-----hhccHHHHHHH
Confidence 54221111110 12334444333322 3445677888999999988632 1 15578888888
Q ss_pred hcCC--CHHHHHHHHHHHHHc
Q 008257 226 VEAP--QNDLRLASIELIQNL 244 (572)
Q Consensus 226 L~~~--~~~v~~~a~~~L~~L 244 (572)
+... ++.+|..++.++..+
T Consensus 167 y~~~~~d~~~k~Kvl~li~d~ 187 (315)
T 3qml_C 167 YERNNKDKQLQIKVLELISKI 187 (315)
T ss_dssp HHHTTTCHHHHHHHHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHHHH
Confidence 8877 788888887776544
No 127
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=59.36 E-value=1.4e+02 Score=29.27 Aligned_cols=168 Identities=17% Similarity=0.202 Sum_probs=112.2
Q ss_pred HHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhc-cCC
Q 008257 196 LVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVIS-ENV 274 (572)
Q Consensus 196 L~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~-~~~ 274 (572)
|.++-...+ +...-++...|+..+....+.++.++.+...++|-..++.. .. .+..-...+|.+++.++ +++
T Consensus 266 LL~LLmHdS---nAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDak--sL--~~t~L~e~LPFi~~~i~~h~e 338 (619)
T 3c2g_A 266 LLGLLLHDS---DAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAK--AL--AKTPLENILPFLLRLIEIHPD 338 (619)
T ss_dssp HHHHHCCSH---HHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCG--GG--GTSCCTTHHHHHHHHHHHCCC
T ss_pred HHHHHhccc---ccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchH--HH--hhccccccchHHHHHhccCCC
Confidence 444544443 35667788999999999999999999999999998888652 11 11111146788888886 444
Q ss_pred CChHHHHHHHHHHhcCCCCcHHHHHHHHhCCChHHHHHHHhhhcc-CCCC---CCcchhhHHHHHHHHHHHHhccC----
Q 008257 275 GISKEQAAAVGLLAELPERDLGLTRQMLDEGAFGLIFSRVKSIQL-GETR---GSRFVTPFLEGLLSVLARVTFVL---- 346 (572)
Q Consensus 275 ~~~~~~~~A~~~L~~L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~-~~~~---~~~~~~~~~e~a~~aL~~l~~~~---- 346 (572)
+ ++-....+.|+|...+....++.-+..|+|+.|...+....+ ++.. .++-.+.+..+.+.++-+|-..-
T Consensus 339 D--dvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~ 416 (619)
T 3c2g_A 339 D--EVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTP 416 (619)
T ss_dssp H--HHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCT
T ss_pred c--ceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecC
Confidence 4 788889999999999888888888999999999988764221 1110 11235666777777777764110
Q ss_pred -----CCChHHHHH---HHHcCchHHHHHHhccC
Q 008257 347 -----SDEPDAIAL---CCEHNLAALFIELLQSN 372 (572)
Q Consensus 347 -----~~~~~~~~~---i~~~g~i~~Lv~lL~~~ 372 (572)
.-.+.-+++ +++-.++..|...|+..
T Consensus 417 NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e 450 (619)
T 3c2g_A 417 NGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCE 450 (619)
T ss_dssp TSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCC
T ss_pred CCccccCChHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 011222333 34556777888888754
No 128
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=59.03 E-value=1.1e+02 Score=28.07 Aligned_cols=143 Identities=13% Similarity=0.052 Sum_probs=92.4
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHh-cCCCCC
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVN-SGHDFD 157 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~-~~~~~~ 157 (572)
+..-.+.+++..++|..|+.+|..+ . ... ..++.+...+.. +..=.+++.++.++..++. .+.
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--~~~------~~L~~ir~~va~----D~~WrVre~lA~a~~~~~~~~~p--- 137 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--KDK------EILIFMRDEVSK----DNNWRVQEVLAKAFDEFCKKIEY--- 137 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--TSH------HHHHHHHHTGGG----CSCHHHHHHHHHHHHHHHHHHCT---
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--CcH------HHHHHHHHHhCC----CCCccHHHHHHHHHHHHHHhcCH---
Confidence 3444555667778999999988887 2 111 133444443432 2335899999999999985 322
Q ss_pred ccccCCCccccchhhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHH
Q 008257 158 SITVGPDNQTLVSEDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLAS 237 (572)
Q Consensus 158 ~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a 237 (572)
+..++.+.....++++.++.-|+..+...+..+.. .... .-.++.|-.+..+++.-||...
T Consensus 138 -------------e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~-k~dp-----~~ll~iL~~L~~D~s~yVrKSV 198 (240)
T 3l9t_A 138 -------------KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF-KENP-----NEAIRRIADLKEDVSEYVRKSV 198 (240)
T ss_dssp -------------TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT-TTCH-----HHHHHHHHTTTTCSCHHHHHHH
T ss_pred -------------HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh-hcCH-----HHHHHHHHHhcCChHHHHHHHH
Confidence 12577888888999999999888776544433211 0001 1145555566667778899999
Q ss_pred HHHHHHcCCCCChhHHHHH
Q 008257 238 IELIQNLSPHMGHELADAL 256 (572)
Q Consensus 238 ~~~L~~Ls~~~~~~~~~~i 256 (572)
.+.|+.+++.+++-+.+.+
T Consensus 199 an~LrD~SK~~Pd~V~~~~ 217 (240)
T 3l9t_A 199 GNALRDISKKFPDLVKIEL 217 (240)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhhCHHHHHHHH
Confidence 9999999988665554333
No 129
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=57.68 E-value=28 Score=30.00 Aligned_cols=72 Identities=10% Similarity=0.121 Sum_probs=53.4
Q ss_pred chHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257 444 AVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL 517 (572)
Q Consensus 444 ~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~ 517 (572)
++..|.+-|.+.++.++..|+..|-.++.+... .....|.+..-+..|+.++....++.+++++..++....
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~--~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGK--IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCH--HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH--HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 778888889999999999999999999987321 122344444455567777853467899999988887665
No 130
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=57.52 E-value=13 Score=31.17 Aligned_cols=73 Identities=10% Similarity=0.116 Sum_probs=55.0
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 008257 171 EDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQNLS 245 (572)
Q Consensus 171 ~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls 245 (572)
..++..+.+-|.+.++.+|..|+..|-.+..+.. ......+.....+..|+.++...++.|+...+.++..-+
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG--~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCG--KIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC--HHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcC--HHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4566677777778889999999888877776654 356666666667777888887778889999888887655
No 131
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=56.05 E-value=1.2e+02 Score=34.76 Aligned_cols=131 Identities=13% Similarity=0.125 Sum_probs=84.2
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccC--CCCCCcchHHHHHHHHHHHHhcCCCC
Q 008257 79 SCLINIMKSGNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVG--SNHLPMRLKEVSATILANVVNSGHDF 156 (572)
Q Consensus 79 ~~Lv~lL~s~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~--~~~~~~~~~~~aa~~L~nla~~~~~~ 156 (572)
..|.+.++.++.+.+..++++|+|+-.. ..++.|.+++.... ..+.+..++..|.++|.+++...
T Consensus 443 ~~l~~~~~~~~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--- 509 (1056)
T 1lsh_A 443 DLLSQSSDRAKEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--- 509 (1056)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC---
T ss_pred HHHHHHHhcCChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc---
Confidence 4455666777888889999999998752 35777777774210 01223567788999999887531
Q ss_pred CccccCCCccccchhhhHHHHHHHHh--cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcC-CCHHH
Q 008257 157 DSITVGPDNQTLVSEDIVHNLLHLIS--NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA-PQNDL 233 (572)
Q Consensus 157 ~~~~~~~~~~~l~~~~~i~~Lv~lL~--~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v 233 (572)
..-+-+.|+.+.. ..+++++..|...|... .|.. .-+..+...+.. ++..|
T Consensus 510 -------------p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t--~P~~-----------~~l~~ia~~l~~E~~~QV 563 (1056)
T 1lsh_A 510 -------------PRKVQEIVLPIFLNVAIKSELRIRSCIVFFES--KPSV-----------ALVSMVAVRLRREPNLQV 563 (1056)
T ss_dssp -------------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT--CCCH-----------HHHHHHHHHHTTCSCHHH
T ss_pred -------------hHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH--CcCH-----------HHHHHHHHHHhhCchHHH
Confidence 1224566778884 56788888887777533 2321 124445556655 45677
Q ss_pred HHHHHHHHHHcCCCC
Q 008257 234 RLASIELIQNLSPHM 248 (572)
Q Consensus 234 ~~~a~~~L~~Ls~~~ 248 (572)
.......|.+++...
T Consensus 564 ~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 564 ASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcC
Confidence 777777888888654
No 132
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=54.49 E-value=63 Score=32.13 Aligned_cols=110 Identities=16% Similarity=0.210 Sum_probs=72.8
Q ss_pred cCchHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhh
Q 008257 359 HNLAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFC 438 (572)
Q Consensus 359 ~g~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 438 (572)
.+++|.++++-.++ +.++|+-.+.-|+..+.... .+
T Consensus 62 ~~fl~~il~f~~d~-~~~vRk~~a~FieEa~~~~~------------------------------------------el- 97 (386)
T 3o2t_A 62 DNFLDEIIAFQADK-SIEVRKFVIGFIEEACKRDI------------------------------------------EL- 97 (386)
T ss_dssp GGGHHHHHGGGGCS-CHHHHHHHHHHHHHHHHHCG------------------------------------------GG-
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHHHHHHHH------------------------------------------HH-
Confidence 36788888888887 88999998888876653211 00
Q ss_pred hhhccchHHHHHhhcCCCHhHHHHHHHHHHHhh--------hcCcc--c-hhhHHHHHhcCChHHHHHHHhhcCCHHHHH
Q 008257 439 LLEGHAVEKLIALLDHTNEKVVEASLAALSTVI--------DDGVD--I-EQGVMVLCEAQGIKPILDVLLEKRTENLQR 507 (572)
Q Consensus 439 l~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~--------~~~~~--~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~ 507 (572)
+ ..+++.|..||++.++.|...+..+..++- .++.. . +.....+.+. -..++.++ .++++.+|-
T Consensus 98 ~--~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~l--K~~Il~~~-ds~n~GVrl 172 (386)
T 3o2t_A 98 L--LKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAM--AGDIILLL-DSDNDGIRT 172 (386)
T ss_dssp H--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH--HHHHHHGG-GCSSHHHHH
T ss_pred H--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH--HHHHHHHh-ccCCcchHH
Confidence 1 237889999999999999988887766653 11110 0 0111112111 12466777 588999999
Q ss_pred HHHHHHHHHH
Q 008257 508 RAVWVVERIL 517 (572)
Q Consensus 508 ~a~~~l~~l~ 517 (572)
.++..++++.
T Consensus 173 ~aiKFle~VI 182 (386)
T 3o2t_A 173 HAIKFVEGLI 182 (386)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999887
No 133
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=53.58 E-value=21 Score=30.83 Aligned_cols=73 Identities=10% Similarity=0.104 Sum_probs=54.9
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHcC
Q 008257 171 EDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA-PQNDLRLASIELIQNLS 245 (572)
Q Consensus 171 ~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~~Ls 245 (572)
..++..|.+-|.+.++.+|..|+..|-.+..+.. ..++..|....-+..|+.++.. .++.|+..++.++..-+
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG--~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCG--KIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTC--HHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh--HHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 4567777777788889999999988888877654 3566677777778888888875 45788888888776654
No 134
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=53.27 E-value=26 Score=32.06 Aligned_cols=72 Identities=14% Similarity=0.229 Sum_probs=54.5
Q ss_pred chHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257 444 AVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL 517 (572)
Q Consensus 444 ~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~ 517 (572)
++..|.+-|.+.++.++..|+..|-.++.+... .....|.+-.-+..|..++....++.++++.+.++....
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~--~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQ--TVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCH--HHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcch--HHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 778889999999999999999999999976431 112344444455567777765677899999999888775
No 135
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=52.78 E-value=23 Score=30.12 Aligned_cols=73 Identities=15% Similarity=0.072 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcC------CCHHHHHHHHHHHHHc
Q 008257 171 EDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA------PQNDLRLASIELIQNL 244 (572)
Q Consensus 171 ~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~------~~~~v~~~a~~~L~~L 244 (572)
..++..|.+-|.+.++.+|..|+..|-.+..+.. ..++..|.....+..|++++.. .++.|+...+.++..-
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG--~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCG--KRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCC--HHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC--HHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 4577778888888999999999998888877654 3667777777888889999863 4578898888888766
Q ss_pred C
Q 008257 245 S 245 (572)
Q Consensus 245 s 245 (572)
+
T Consensus 125 ~ 125 (149)
T 3g2s_A 125 T 125 (149)
T ss_dssp H
T ss_pred H
Confidence 5
No 136
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=52.30 E-value=2e+02 Score=33.34 Aligned_cols=189 Identities=14% Similarity=0.116 Sum_probs=105.6
Q ss_pred CcHHHHHHHc--cCCHHHHHHHHHHHHHhcc------CcchhHHHHhhhHHHHHHhccc-------CCHHHHHHHHHHHH
Q 008257 37 RLQPLLTQIL--EGPQETKLSLAAFLGDLAL------NSDVKVLVARTVGSCLINIMKS-------GNMQAREAALKALN 101 (572)
Q Consensus 37 ~i~~Lv~~L~--~~~~~~~~~aa~~L~~l~~------~~~~k~~i~~~g~~~Lv~lL~s-------~~~~~~~~A~~aL~ 101 (572)
+...+...|. +.+..+|..|+..|.+... .++.|..|. ..|++++.+ ....++...+.++.
T Consensus 46 ~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir----~~ll~~l~~~~~~~~~~~~~vr~kla~~la 121 (1204)
T 3a6p_A 46 ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK----NSVMELIANGTLNILEEENHIKDALSRIVV 121 (1204)
T ss_dssp THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH----HHHHHHHHHSSCCTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH----HHHHHHHHhhccccccccHHHHHHHHHHHH
Confidence 4444444443 4568899999999988643 223333333 455555542 35778888888999
Q ss_pred HhhcC--CCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHHhcCCCCCccccCCCc---cccch--hhhH
Q 008257 102 QISSC--EPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVVNSGHDFDSITVGPDN---QTLVS--EDIV 174 (572)
Q Consensus 102 ~Ls~~--~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla~~~~~~~~~~~~~~~---~~l~~--~~~i 174 (572)
.++.. ++.+ ...++-|++++.+. ...++.+..+|..|+..-.+++........ ..+.. ..++
T Consensus 122 ~Ia~~d~p~~W-----p~ll~~L~~~~~~~------~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~ 190 (1204)
T 3a6p_A 122 EMIKREWPQHW-----PDMLIELDTLSKQG------ETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIF 190 (1204)
T ss_dssp HHHHHHSTTTC-----TTHHHHHHHHHHTC------HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHhCcccc-----hHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHH
Confidence 98864 4455 35678888888642 466888899999887531111110000000 00110 1233
Q ss_pred HHHHHHHhc-------------------CChhHHHHHHHHHHHccCCCCccHHHHHHHHhcC--ChHHHHHHhcCCCHHH
Q 008257 175 HNLLHLISN-------------------TGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSG--ATISLVQFVEAPQNDL 233 (572)
Q Consensus 175 ~~Lv~lL~~-------------------~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~v 233 (572)
+.+..++.. +..++...++.++.+....-.. ..+.+.. .++.+..++. ++++
T Consensus 191 ~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-----~~i~~~~~~ll~~l~~~l~--~~~l 263 (1204)
T 3a6p_A 191 SFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM-----SHITAENCKLLEILCLLLN--EQEL 263 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH-----HHHHTTTSHHHHHHHHGGG--CTTT
T ss_pred HHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH-----HHHHhccchHHHHHHHHcC--CHHH
Confidence 333444432 1234556677777766554321 2233332 5566665554 4668
Q ss_pred HHHHHHHHHHcCCC
Q 008257 234 RLASIELIQNLSPH 247 (572)
Q Consensus 234 ~~~a~~~L~~Ls~~ 247 (572)
+..|+.+|..+...
T Consensus 264 r~~A~ecL~~i~s~ 277 (1204)
T 3a6p_A 264 QLGAAECLLIAVSR 277 (1204)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC
Confidence 89999998888753
No 137
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=51.18 E-value=22 Score=30.10 Aligned_cols=73 Identities=14% Similarity=0.051 Sum_probs=56.1
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcC------CCHHHHHHHHHHHHHc
Q 008257 171 EDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA------PQNDLRLASIELIQNL 244 (572)
Q Consensus 171 ~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~------~~~~v~~~a~~~L~~L 244 (572)
..++..+.+-|.+.++.+|..|+..|-.+..+.. ..++..+....-+..|+.++.. .+..|+..++.++..-
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG--~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCG--EKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC--HHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC--HHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 4466777777788899999999998888877754 3677777777888888888864 3568888888877665
Q ss_pred C
Q 008257 245 S 245 (572)
Q Consensus 245 s 245 (572)
+
T Consensus 115 ~ 115 (148)
T 1mhq_A 115 T 115 (148)
T ss_dssp H
T ss_pred H
Confidence 5
No 138
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=49.23 E-value=42 Score=28.00 Aligned_cols=71 Identities=11% Similarity=0.177 Sum_probs=52.7
Q ss_pred chHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257 444 AVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL 517 (572)
Q Consensus 444 ~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~ 517 (572)
++..|.+-|.+.++.++..|+..|-.++.+... .-...|.+-.-+.-++.++ ...++.++++...++....
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~--~f~~evas~~Fl~el~~l~-~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGK--IFHLEVCSRDFASEVSNVL-NKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH--HHHHHHSSHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCH--HHHHHHhhHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHH
Confidence 778888889999999999999999999876431 1122344444455577777 4678999999998887665
No 139
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=48.86 E-value=1e+02 Score=28.68 Aligned_cols=108 Identities=16% Similarity=0.218 Sum_probs=69.3
Q ss_pred chHHHHHHhccCCcHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCccccccccCCCccccccccccCccCccchhhhh
Q 008257 361 LAALFIELLQSNGLDKVQMVSATALENLSLESKNLTKLPELPPSGFCASIFPCFSKQPVITGLCRLHRGLCSLKETFCLL 440 (572)
Q Consensus 361 ~i~~Lv~lL~~~~~~~vk~~Aa~aL~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~l~ 440 (572)
+++.++.+-.++ +.++|+-.+.-++........ .
T Consensus 54 ~l~~il~~~~~~-~~~vrk~~~~Fi~e~~~~k~~---------------------------------------------l 87 (257)
T 3gs3_A 54 FLESVLSLAHDS-NMEVRKQVVAFVEQVCKVKVE---------------------------------------------L 87 (257)
T ss_dssp HHHHHHGGGGCS-CHHHHHHHHHHHHHHHHHCGG---------------------------------------------G
T ss_pred HHHHHHHhccCC-hHHHHHHHHHHHHHHHHHHHH---------------------------------------------H
Confidence 456666665565 888999888888766532110 0
Q ss_pred hccchHHHHHhhcCCCHhHHHHHHHHHHHhh--------hcCcc---chhhHHHHHhcCChHHHHHHHhhcCCHHHHHHH
Q 008257 441 EGHAVEKLIALLDHTNEKVVEASLAALSTVI--------DDGVD---IEQGVMVLCEAQGIKPILDVLLEKRTENLQRRA 509 (572)
Q Consensus 441 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~l~--------~~~~~---~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a 509 (572)
-...++.|..||++.++.|...+..+..++- .++.. .+.....+.+. -..++.++ .++++.+|-.+
T Consensus 88 ~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~l--K~~Il~~~-~s~n~gvkl~~ 164 (257)
T 3gs3_A 88 LPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLI--KAQILDMI-DNENDGIRTNA 164 (257)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHH--HHHHHHGG-GSSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH--HHHHHHHH-ccCCcchHHHH
Confidence 1237889999999999999988888766653 22110 01111112110 12466777 58899999999
Q ss_pred HHHHHHHH
Q 008257 510 VWVVERIL 517 (572)
Q Consensus 510 ~~~l~~l~ 517 (572)
...++++.
T Consensus 165 iKF~e~vI 172 (257)
T 3gs3_A 165 IKFLEGVV 172 (257)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999887
No 140
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=46.01 E-value=59 Score=27.50 Aligned_cols=72 Identities=11% Similarity=0.082 Sum_probs=53.8
Q ss_pred chHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhh-----cCCHHHHHHHHHHHHHHH
Q 008257 444 AVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLE-----KRTENLQRRAVWVVERIL 517 (572)
Q Consensus 444 ~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~-----~~~~~~~~~a~~~l~~l~ 517 (572)
++..|.+-|.+.++.++..|+..|-.++.+... .....|....-+..|+.++.. ..++.++++...++....
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~--~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGK--RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCH--HHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCH--HHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 778888899999999999999999999976431 112345555555667777732 357889999998887775
No 141
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=45.33 E-value=27 Score=30.38 Aligned_cols=73 Identities=16% Similarity=0.108 Sum_probs=55.6
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcC------CCHHHHHHHHHHHHHc
Q 008257 171 EDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEA------PQNDLRLASIELIQNL 244 (572)
Q Consensus 171 ~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~------~~~~v~~~a~~~L~~L 244 (572)
..++..|.+-|.+.++.+|..|+..|-.+..+.. ..++..|....-+..|+.++.. .+..|+..++.++..-
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG--~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCG--RRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH--HHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC--HHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 4567777777888899999999998888877753 3567777777788888988863 2468888888877665
Q ss_pred C
Q 008257 245 S 245 (572)
Q Consensus 245 s 245 (572)
+
T Consensus 127 ~ 127 (171)
T 1juq_A 127 T 127 (171)
T ss_dssp H
T ss_pred H
Confidence 5
No 142
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=44.55 E-value=46 Score=30.15 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=53.3
Q ss_pred chHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008257 444 AVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLEKRTENLQRRAVWVVERIL 517 (572)
Q Consensus 444 ~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~~~a~~~l~~l~ 517 (572)
++..|.+-|.+.++.++..|+..|-.++.+-.. .....|.+..-+..|+.++....+..++++++.++....
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~--~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA--PVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH--HHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCH--HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 777888889999999999999999999987431 112344444445556777754567889999988887765
No 143
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=40.79 E-value=60 Score=27.37 Aligned_cols=69 Identities=13% Similarity=0.047 Sum_probs=53.8
Q ss_pred CcHHHHHHHccCCHHHHHHHHHHHHHhccC--cchhHHHHhhhH-HHHHHhccc------CCHHHHHHHHHHHHHhhc
Q 008257 37 RLQPLLTQILEGPQETKLSLAAFLGDLALN--SDVKVLVARTVG-SCLINIMKS------GNMQAREAALKALNQISS 105 (572)
Q Consensus 37 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~~--~~~k~~i~~~g~-~~Lv~lL~s------~~~~~~~~A~~aL~~Ls~ 105 (572)
++..+.++|+++++.++..|...|-.+..+ ......|+.... ..|+++++. .++.++...+..+..-+.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 357788899999999999999988887774 344556666666 889998874 367899999988888774
No 144
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=39.69 E-value=70 Score=27.71 Aligned_cols=72 Identities=11% Similarity=0.095 Sum_probs=53.1
Q ss_pred chHHHHHhhcCCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHHHHHHHhh-----cCCHHHHHHHHHHHHHHH
Q 008257 444 AVEKLIALLDHTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKPILDVLLE-----KRTENLQRRAVWVVERIL 517 (572)
Q Consensus 444 ~i~~Lv~lL~~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~L~~lL~~-----~~~~~~~~~a~~~l~~l~ 517 (572)
++..|.+-|.+.++.++..|+..|-.++.+... .....|.+..-+..|+.++.. ..++.+++++..++....
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~--~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGR--RFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH--HHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH--HHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 778888999999999999999999999987321 122345554455667777731 235889999999888775
No 145
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=38.69 E-value=1.5e+02 Score=27.52 Aligned_cols=104 Identities=10% Similarity=0.144 Sum_probs=64.0
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHH--------
Q 008257 171 EDIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFVEAPQNDLRLASIELIQ-------- 242 (572)
Q Consensus 171 ~~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~-------- 242 (572)
..+++.++.+..+.+.++|...+..|...+.... +.. ...++.|..+|+.+++.+.+.+..+..
T Consensus 52 ~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~---~l~-----~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~ 123 (257)
T 3gs3_A 52 EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV---ELL-----PHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQ 123 (257)
T ss_dssp HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG---GGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH---HHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5577777777667788899999888877764321 111 235778888998888888777765443
Q ss_pred HcCCCCC-----hhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHH
Q 008257 243 NLSPHMG-----HELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLL 287 (572)
Q Consensus 243 ~Ls~~~~-----~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L 287 (572)
.++.+.+ .+.++.+.. .-..++.++++++. .++..++..+
T Consensus 124 ~i~~~~~~~~~~~~~W~~m~~---lK~~Il~~~~s~n~--gvkl~~iKF~ 168 (257)
T 3gs3_A 124 YLCSLMEPGDSAEQAWNILSL---IKAQILDMIDNEND--GIRTNAIKFL 168 (257)
T ss_dssp HHTTSSSCCHHHHHHHHHHHH---HHHHHHHGGGSSCH--HHHHHHHHHH
T ss_pred HHhcCCCCcchHHHHHHHHHH---HHHHHHHHHccCCc--chHHHHHHHH
Confidence 3444322 233434332 22345566666554 6666665544
No 146
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=38.14 E-value=20 Score=33.52 Aligned_cols=101 Identities=13% Similarity=0.143 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHHhhccCcc-hHHHHHHcCCcHHHHHHHcc--------CCHHHHHHHHHHHHHhcc-CcchhHHHHh
Q 008257 6 SENLLTVEKAEKTLANLEKCEN-NVRQMAENGRLQPLLTQILE--------GPQETKLSLAAFLGDLAL-NSDVKVLVAR 75 (572)
Q Consensus 6 s~~~~~~~~A~~~L~~L~~~~~-n~~~i~~~g~i~~Lv~~L~~--------~~~~~~~~aa~~L~~l~~-~~~~k~~i~~ 75 (572)
+.++..+.-++++++|+..++. .+..+........++..+.+ .+..+|+.+|..+.|++. ....+.. .
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~--~ 178 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD--L 178 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSC--T
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccch--H
Confidence 4567788899999999999888 56666543334555555422 244577888889999875 1111111 1
Q ss_pred hhHHHHHHhccc---------CCHHHHHHHHHHHHHhhcCCC
Q 008257 76 TVGSCLINIMKS---------GNMQAREAALKALNQISSCEP 108 (572)
Q Consensus 76 ~g~~~Lv~lL~s---------~~~~~~~~A~~aL~~Ls~~~~ 108 (572)
+....+++++.. .++|....++-||++|...++
T Consensus 179 e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 179 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp THHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 122556665552 367888889999999986443
No 147
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=34.86 E-value=2.3e+02 Score=27.06 Aligned_cols=135 Identities=11% Similarity=0.025 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHhhccCcchHHHHHH--cCCcHHHHHHHccCCHHHHHHHHHHHHHhcc-CcchhHHHHhh--hH----
Q 008257 8 NLLTVEKAEKTLANLEKCENNVRQMAE--NGRLQPLLTQILEGPQETKLSLAAFLGDLAL-NSDVKVLVART--VG---- 78 (572)
Q Consensus 8 ~~~~~~~A~~~L~~L~~~~~n~~~i~~--~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~~-~~~~k~~i~~~--g~---- 78 (572)
|....+.|+.-|-.++++-..=.+|.+ ...+..|+ .....+..++..++..++..-. ++..-..|.+. ..
T Consensus 41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 566788899999999998777666664 33344444 3345677889999999887665 44444444432 11
Q ss_pred -HHHHHhccc---CCHHHHHHHHHHHHHhhcCCCcHHHHHHcCChHHHHHHHhccCCCCCCcchHHHHHHHHHHHH
Q 008257 79 -SCLINIMKS---GNMQAREAALKALNQISSCEPSAKVLIHAGILPPLVKDLFTVGSNHLPMRLKEVSATILANVV 150 (572)
Q Consensus 79 -~~Lv~lL~s---~~~~~~~~A~~aL~~Ls~~~~~~~~iv~~G~i~~Lv~lL~s~~~~~~~~~~~~~aa~~L~nla 150 (572)
+.|..+... .....+..=+.+|..|..++.. . ...++..|.+++... ..+..+|..+..++..+-
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-~~~~m~~L~~ly~~~---~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-PIYSTVVLQNVYERN---NKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CCHHHHHHHHHHT---TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-hhccHHHHHHHHccC---CCCHHHHHHHHHHHHHHc
Confidence 223333322 2335677888889999887531 1 245778899988753 124788999888888775
No 148
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=33.21 E-value=30 Score=31.61 Aligned_cols=69 Identities=14% Similarity=0.247 Sum_probs=46.2
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHHHh
Q 008257 218 ATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGLLA 288 (572)
Q Consensus 218 ~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~L~ 288 (572)
++..|.+-|.++++.++..|+.+|..+..+.+......+... ..+..|++++....+ ..++...+.+|.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~-~fl~~l~~l~~~~~~-~~Vk~kil~li~ 114 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANK-QTMEELKDLLKRQVE-VNVRNKILYLIQ 114 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSH-HHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccH-HHHHHHHHHhccCCC-HHHHHHHHHHHH
Confidence 355666777889999999999999998876565554455444 566777777754332 355555555443
No 149
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.41 E-value=33 Score=31.19 Aligned_cols=67 Identities=7% Similarity=0.118 Sum_probs=43.7
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhHHHHHhcccCChhhHHhhhccCCCChHHHHHHHHH
Q 008257 218 ATISLVQFVEAPQNDLRLASIELIQNLSPHMGHELADALRGAVGQLGSLIRVISENVGISKEQAAAVGL 286 (572)
Q Consensus 218 ~i~~Lv~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~i~~~~g~l~~Lv~lL~~~~~~~~~~~~A~~~ 286 (572)
++..|.+-|.++++.++..|+.+|..+..+.+......+... ..+..|++++.+..+ ..++..++.+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~-~fl~~l~~l~~~~~~-~~Vk~kil~l 109 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTK-ENCEMFSSFLESTPH-ENVRQKMLEL 109 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSH-HHHHHHHHHHHHCSC-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhH-HHHHHHHHHhcCCCc-HHHHHHHHHH
Confidence 345566777889999999999999998876555554445444 566777777654332 2444444333
No 150
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=25.78 E-value=1.6e+02 Score=24.88 Aligned_cols=72 Identities=10% Similarity=0.141 Sum_probs=49.5
Q ss_pred chHHHHHhhc-CCCHhHHHHHHHHHHHhhhcCccchhhHHHHHhcCChHH-HHHHHhh--cCCHHHHHHHHHHHHHHH
Q 008257 444 AVEKLIALLD-HTNEKVVEASLAALSTVIDDGVDIEQGVMVLCEAQGIKP-ILDVLLE--KRTENLQRRAVWVVERIL 517 (572)
Q Consensus 444 ~i~~Lv~lL~-~~~~~v~~~A~~aL~~l~~~~~~~~~~~~~i~~~g~i~~-L~~lL~~--~~~~~~~~~a~~~l~~l~ 517 (572)
++..|.+-|. +.++.++..|+..|-.++.+... .-...|.+..-+.. |+.++.. .++..+++++..++....
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~--~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGH--RFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCH--HHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCH--HHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 7778888887 58999999999999999987421 12234444444454 5666622 234688998888887665
No 151
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=25.49 E-value=98 Score=26.30 Aligned_cols=73 Identities=19% Similarity=0.110 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHh-cCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCChHH-HHHHhcC---CCHHHHHHHHHHHHHcC
Q 008257 171 EDIVHNLLHLIS-NTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATIS-LVQFVEA---PQNDLRLASIELIQNLS 245 (572)
Q Consensus 171 ~~~i~~Lv~lL~-~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~i~~-Lv~lL~~---~~~~v~~~a~~~L~~Ls 245 (572)
..++..|.+-|+ +.++.+|..|+..|-.+..+.. ...+..+....-+.. |+.++.. .+..|++.++.++..-+
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG--~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCG--HRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSC--HHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC--HHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 345666666676 4678899999988888777654 356666777777776 7888742 23478888877776554
No 152
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=22.92 E-value=1.2e+02 Score=28.06 Aligned_cols=106 Identities=12% Similarity=0.082 Sum_probs=64.2
Q ss_pred cccCCHHHHHHHHHHHHHhhcCCC-cHHHHHHcCChHHHHHHHhccCCC---CCCcchHHHHHHHHHHHHhcCCCCCccc
Q 008257 85 MKSGNMQAREAALKALNQISSCEP-SAKVLIHAGILPPLVKDLFTVGSN---HLPMRLKEVSATILANVVNSGHDFDSIT 160 (572)
Q Consensus 85 L~s~~~~~~~~A~~aL~~Ls~~~~-~~~~iv~~G~i~~Lv~lL~s~~~~---~~~~~~~~~aa~~L~nla~~~~~~~~~~ 160 (572)
+.+..+..+.-+++++.|+-.++. .++.+.+......+++.+.+.-.+ .....++..++..+.|++.......
T Consensus 99 ~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~--- 175 (253)
T 3gae_A 99 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN--- 175 (253)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSC---
T ss_pred cCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhcc---
Confidence 345677889999999999999888 465555443345555544221000 0125788899999999986321100
Q ss_pred cCCCccccchhhhHHHHHHHHhc---------CChhHHHHHHHHHHHccC
Q 008257 161 VGPDNQTLVSEDIVHNLLHLISN---------TGPTIECKLLQVLVGLTS 201 (572)
Q Consensus 161 ~~~~~~~l~~~~~i~~Lv~lL~~---------~~~~~q~~a~~aL~~l~~ 201 (572)
. .......+++.+.. .++|...+++-+|.++..
T Consensus 176 -----~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 176 -----S---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp -----S---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred -----c---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 0 01234455555542 366777777777777664
No 153
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=21.77 E-value=1.5e+02 Score=19.19 Aligned_cols=37 Identities=16% Similarity=0.340 Sum_probs=26.6
Q ss_pred ChhhHHhhhccCCCChHHHHHHHHHHhcCCCCcHHHHHHHHh
Q 008257 262 QLGSLIRVISENVGISKEQAAAVGLLAELPERDLGLTRQMLD 303 (572)
Q Consensus 262 ~l~~Lv~lL~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~l~~ 303 (572)
++..|++-|++++. ++.+-..+.+|.. ++.....|++
T Consensus 2 aLqqLl~tlksp~s-p~qqqqvl~ILks----nPqLMAAfIk 38 (47)
T 1zoq_C 2 ALQDLLRTLKSPSS-PQQQQQVLNILKS----NPQLMAAFIK 38 (47)
T ss_dssp HHHHHHHTCCSCCC-HHHHHHHHHHHHT----CHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC-HHHHHHHHHHHHc----CHHHHHHHHH
Confidence 46788888998885 5777777777765 7776665553
No 154
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=20.84 E-value=1.2e+02 Score=30.60 Aligned_cols=99 Identities=11% Similarity=0.061 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHhhccCcchHHHHHHc-CCcHHHHHHHcc--------CCHHHHHHHHHHHHHhccC-cchhHHHHh
Q 008257 6 SENLLTVEKAEKTLANLEKCENNVRQMAEN-GRLQPLLTQILE--------GPQETKLSLAAFLGDLALN-SDVKVLVAR 75 (572)
Q Consensus 6 s~~~~~~~~A~~~L~~L~~~~~n~~~i~~~-g~i~~Lv~~L~~--------~~~~~~~~aa~~L~~l~~~-~~~k~~i~~ 75 (572)
+..+..+.-+.++++||..++.....+... ...+.+++.+.. .+..+++.+|..+.|++.. ...+..
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~--- 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD--- 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC---
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---
Confidence 456778889999999999988854444432 234556655421 1345678888889998762 111111
Q ss_pred hhH-HHHHHhcc---------cCCHHHHHHHHHHHHHhhcCC
Q 008257 76 TVG-SCLINIMK---------SGNMQAREAALKALNQISSCE 107 (572)
Q Consensus 76 ~g~-~~Lv~lL~---------s~~~~~~~~A~~aL~~Ls~~~ 107 (572)
... ..+++++. ..+.|..-.++-||++|...+
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 122 56666665 257888999999999999643
No 155
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=20.44 E-value=2.1e+02 Score=23.80 Aligned_cols=74 Identities=12% Similarity=0.203 Sum_probs=46.5
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHHccCCCCccHHHHHHHHhcCC-hHHHHHHhc------CCC--HHHHHHHHHHHH
Q 008257 172 DIVHNLLHLISNTGPTIECKLLQVLVGLTSSPTTVLSVVSAIKSSGA-TISLVQFVE------APQ--NDLRLASIELIQ 242 (572)
Q Consensus 172 ~~i~~Lv~lL~~~~~~~q~~a~~aL~~l~~~~~~~~~~~~~i~~~g~-i~~Lv~lL~------~~~--~~v~~~a~~~L~ 242 (572)
.+.+.|.+-|...++.++.++++.|-.|+.... +.++..++++-. |..|..+=. .++ ..||..|-.++.
T Consensus 49 eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs--~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 49 EFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG--SEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC--HHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC--HHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 456677777778889999999999999997654 356666655432 222221111 112 356777777776
Q ss_pred HcCCC
Q 008257 243 NLSPH 247 (572)
Q Consensus 243 ~Ls~~ 247 (572)
.|-+.
T Consensus 127 ll~d~ 131 (140)
T 1vdy_A 127 AIFSE 131 (140)
T ss_dssp HHTCC
T ss_pred HHhCc
Confidence 66543
Done!