Query 008258
Match_columns 572
No_of_seqs 360 out of 2459
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 21:31:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06126 hypothetical protein; 100.0 5.4E-53 1.2E-57 464.1 45.2 365 39-431 3-375 (545)
2 PRK08294 phenol 2-monooxygenas 100.0 3.2E-48 7E-53 428.7 42.9 444 41-514 30-532 (634)
3 PRK06184 hypothetical protein; 100.0 1.2E-47 2.6E-52 417.5 41.1 346 43-431 3-352 (502)
4 PRK07190 hypothetical protein; 100.0 6.3E-47 1.4E-51 407.3 39.5 342 40-429 2-345 (487)
5 PRK08244 hypothetical protein; 100.0 2.3E-46 5E-51 406.6 38.5 337 43-427 2-340 (493)
6 PRK08132 FAD-dependent oxidore 100.0 7.2E-46 1.6E-50 407.4 42.5 345 42-430 22-370 (547)
7 PRK06183 mhpA 3-(3-hydroxyphen 100.0 5.6E-46 1.2E-50 407.3 41.2 349 41-431 8-358 (538)
8 PRK06834 hypothetical protein; 100.0 6.6E-45 1.4E-49 392.1 38.8 331 43-428 3-334 (488)
9 PF01494 FAD_binding_3: FAD bi 100.0 1.3E-45 2.8E-50 383.7 29.6 350 43-423 1-355 (356)
10 COG0654 UbiH 2-polyprenyl-6-me 100.0 7E-43 1.5E-47 367.7 34.5 340 43-427 2-346 (387)
11 PRK08013 oxidoreductase; Provi 100.0 8.6E-43 1.9E-47 368.9 33.3 340 43-428 3-354 (400)
12 PRK08243 4-hydroxybenzoate 3-m 100.0 3.1E-41 6.7E-46 356.2 38.2 340 43-431 2-350 (392)
13 PRK08850 2-octaprenyl-6-methox 100.0 4.2E-41 9.1E-46 356.9 33.2 342 42-430 3-356 (405)
14 PRK07045 putative monooxygenas 100.0 1.5E-40 3.3E-45 350.7 35.6 346 40-430 2-357 (388)
15 PRK06617 2-octaprenyl-6-methox 100.0 9.6E-41 2.1E-45 350.2 33.9 330 44-431 2-338 (374)
16 TIGR01989 COQ6 Ubiquinone bios 100.0 8.8E-41 1.9E-45 357.2 33.3 343 44-430 1-407 (437)
17 PRK07364 2-octaprenyl-6-methox 100.0 2.2E-40 4.7E-45 352.8 35.3 348 41-431 16-369 (415)
18 PRK08849 2-octaprenyl-3-methyl 100.0 1.8E-40 4E-45 349.4 33.8 336 43-428 3-346 (384)
19 PRK05714 2-octaprenyl-3-methyl 100.0 2E-40 4.3E-45 351.9 32.1 343 43-431 2-360 (405)
20 PRK07494 2-octaprenyl-6-methox 100.0 4.1E-40 9E-45 347.5 31.2 341 39-424 3-345 (388)
21 PRK07333 2-octaprenyl-6-methox 100.0 1.9E-39 4.1E-44 344.2 33.3 341 44-429 2-353 (403)
22 PRK08773 2-octaprenyl-3-methyl 100.0 2.3E-39 5E-44 342.2 32.6 332 41-419 4-345 (392)
23 PRK06996 hypothetical protein; 100.0 3.3E-39 7.1E-44 341.4 33.6 345 38-431 6-360 (398)
24 TIGR01984 UbiH 2-polyprenyl-6- 100.0 2.7E-39 5.8E-44 340.7 31.9 339 45-431 1-348 (382)
25 PRK06475 salicylate hydroxylas 100.0 3.1E-39 6.6E-44 342.0 30.8 339 44-425 3-354 (400)
26 PRK08020 ubiF 2-octaprenyl-3-m 100.0 1E-38 2.2E-43 337.3 34.4 337 40-424 2-349 (391)
27 PRK07588 hypothetical protein; 100.0 1.6E-38 3.5E-43 335.7 33.6 335 44-426 1-344 (391)
28 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 3.7E-38 8.1E-43 332.0 35.2 338 43-432 2-351 (390)
29 TIGR01988 Ubi-OHases Ubiquinon 100.0 1.8E-38 4E-43 334.5 32.1 340 45-431 1-351 (385)
30 PRK07608 ubiquinone biosynthes 100.0 3.8E-38 8.2E-43 332.6 34.3 338 43-430 5-353 (388)
31 PRK06753 hypothetical protein; 100.0 2.8E-38 6E-43 331.9 31.9 328 44-431 1-338 (373)
32 PRK07538 hypothetical protein; 100.0 1.3E-37 2.8E-42 330.9 35.1 342 44-426 1-361 (413)
33 PRK08163 salicylate hydroxylas 100.0 5.2E-38 1.1E-42 332.4 30.9 342 42-431 3-356 (396)
34 PRK09126 hypothetical protein; 100.0 5.4E-38 1.2E-42 331.9 30.2 339 43-429 3-353 (392)
35 PRK06185 hypothetical protein; 100.0 2.5E-37 5.5E-42 328.4 34.3 345 41-431 4-357 (407)
36 PRK05868 hypothetical protein; 100.0 3.8E-37 8.1E-42 322.2 34.7 334 45-424 3-345 (372)
37 PRK05732 2-octaprenyl-6-methox 100.0 1.6E-37 3.4E-42 328.7 31.7 343 42-431 2-357 (395)
38 PRK06847 hypothetical protein; 100.0 1.1E-36 2.3E-41 320.1 35.9 335 43-430 4-350 (375)
39 PRK07236 hypothetical protein; 100.0 3.8E-36 8.1E-41 316.9 31.0 333 43-429 6-373 (386)
40 TIGR03219 salicylate_mono sali 100.0 1.3E-36 2.7E-41 323.5 27.3 340 45-431 2-373 (414)
41 PLN02927 antheraxanthin epoxid 100.0 3.3E-35 7.1E-40 320.2 31.0 353 41-437 79-452 (668)
42 PLN02985 squalene monooxygenas 100.0 1.6E-34 3.4E-39 312.3 32.1 343 38-431 38-401 (514)
43 KOG2614 Kynurenine 3-monooxyge 100.0 2.6E-35 5.7E-40 294.1 22.6 337 44-429 3-354 (420)
44 PTZ00367 squalene epoxidase; P 100.0 4.2E-33 9E-38 302.5 33.0 342 42-431 32-421 (567)
45 PRK08255 salicylyl-CoA 5-hydro 100.0 3.6E-30 7.9E-35 291.4 27.1 328 45-442 2-350 (765)
46 TIGR02023 BchP-ChlP geranylger 100.0 2.3E-28 5.1E-33 257.7 33.6 316 44-418 1-322 (388)
47 PLN00093 geranylgeranyl diphos 100.0 5.5E-28 1.2E-32 257.5 36.2 321 38-416 34-369 (450)
48 TIGR02032 GG-red-SF geranylger 100.0 1.5E-28 3.2E-33 249.1 30.3 289 44-393 1-295 (295)
49 PRK11445 putative oxidoreducta 100.0 1.6E-27 3.5E-32 247.8 28.8 308 44-417 2-317 (351)
50 TIGR02028 ChlP geranylgeranyl 100.0 2.6E-26 5.6E-31 242.4 34.6 314 44-415 1-329 (398)
51 COG0644 FixC Dehydrogenases (f 99.9 2.4E-24 5.2E-29 227.4 33.6 317 42-422 2-330 (396)
52 TIGR01790 carotene-cycl lycope 99.9 2.7E-23 5.9E-28 219.4 37.1 354 45-493 1-369 (388)
53 PRK10015 oxidoreductase; Provi 99.9 6.2E-23 1.3E-27 218.4 31.1 332 41-416 3-355 (429)
54 PLN02697 lycopene epsilon cycl 99.9 8.5E-22 1.8E-26 212.1 37.2 311 41-417 106-440 (529)
55 TIGR01789 lycopene_cycl lycope 99.9 7.2E-23 1.6E-27 213.5 26.4 339 45-495 1-356 (370)
56 KOG3855 Monooxygenase involved 99.9 3.2E-23 6.9E-28 205.9 22.3 354 22-417 14-431 (481)
57 PRK10157 putative oxidoreducta 99.9 3.7E-22 8.1E-27 212.6 31.3 331 41-416 3-355 (428)
58 PLN02463 lycopene beta cyclase 99.9 1.7E-20 3.6E-25 199.2 34.5 311 41-416 26-363 (447)
59 KOG1298 Squalene monooxygenase 99.9 3.2E-20 7E-25 182.6 24.2 353 30-431 32-401 (509)
60 PF05834 Lycopene_cycl: Lycope 99.8 8.8E-19 1.9E-23 183.5 29.6 275 45-395 1-290 (374)
61 PF04820 Trp_halogenase: Trypt 99.8 1.3E-18 2.8E-23 185.9 25.9 333 45-429 1-383 (454)
62 PRK04176 ribulose-1,5-biphosph 99.5 6.3E-13 1.4E-17 131.5 14.1 144 41-243 23-179 (257)
63 TIGR00292 thiazole biosynthesi 99.4 2.2E-12 4.7E-17 127.2 14.4 143 42-243 20-176 (254)
64 PF08491 SE: Squalene epoxidas 99.4 5.9E-12 1.3E-16 122.5 16.1 189 226-431 2-205 (276)
65 COG2081 Predicted flavoprotein 99.3 9.4E-12 2E-16 125.5 10.1 157 42-239 2-169 (408)
66 TIGR01377 soxA_mon sarcosine o 99.3 4.7E-10 1E-14 118.1 22.0 70 152-248 142-212 (380)
67 COG1635 THI4 Ribulose 1,5-bisp 99.2 1.8E-10 3.8E-15 106.6 13.3 143 42-243 29-184 (262)
68 PF01946 Thi4: Thi4 family; PD 99.2 2E-10 4.3E-15 107.1 13.7 142 41-241 15-169 (230)
69 PRK13369 glycerol-3-phosphate 99.2 7.9E-09 1.7E-13 112.7 27.7 178 41-241 4-220 (502)
70 PRK11259 solA N-methyltryptoph 99.2 3.1E-09 6.8E-14 111.7 21.9 36 43-78 3-38 (376)
71 TIGR01373 soxB sarcosine oxida 99.2 5.9E-09 1.3E-13 110.9 24.1 36 41-76 28-65 (407)
72 PF03486 HI0933_like: HI0933-l 99.1 4.3E-10 9.3E-15 118.2 13.2 141 44-238 1-167 (409)
73 PRK12409 D-amino acid dehydrog 99.1 1.2E-08 2.7E-13 108.5 23.7 70 155-245 197-267 (410)
74 KOG2415 Electron transfer flav 99.1 2.8E-09 6E-14 106.9 16.8 58 360-417 385-446 (621)
75 PRK12266 glpD glycerol-3-phosp 99.1 4.2E-08 9.1E-13 107.1 27.8 66 152-238 152-217 (508)
76 PRK11728 hydroxyglutarate oxid 99.1 2.5E-09 5.4E-14 113.2 17.5 69 151-246 145-214 (393)
77 TIGR01320 mal_quin_oxido malat 99.1 1.1E-08 2.3E-13 110.6 21.6 76 151-247 174-251 (483)
78 PLN02172 flavin-containing mon 99.1 4.1E-09 8.8E-14 113.1 16.6 154 42-237 9-173 (461)
79 PRK05192 tRNA uridine 5-carbox 99.0 3.8E-09 8.3E-14 114.6 16.2 149 41-237 2-157 (618)
80 PF01266 DAO: FAD dependent ox 99.0 2.1E-09 4.6E-14 111.6 13.7 68 151-245 143-212 (358)
81 COG0579 Predicted dehydrogenas 99.0 3.4E-09 7.5E-14 110.5 14.2 181 42-247 2-222 (429)
82 PF13738 Pyr_redox_3: Pyridine 99.0 1.4E-09 3.1E-14 103.8 10.4 135 47-238 1-139 (203)
83 PF12831 FAD_oxidored: FAD dep 99.0 3.8E-10 8.1E-15 120.5 5.8 154 45-247 1-159 (428)
84 PRK05257 malate:quinone oxidor 99.0 1.3E-08 2.8E-13 110.1 17.3 75 151-246 179-256 (494)
85 PRK00711 D-amino acid dehydrog 99.0 7.1E-08 1.5E-12 102.9 22.7 33 45-77 2-34 (416)
86 PTZ00383 malate:quinone oxidor 98.9 1.4E-08 3.1E-13 109.4 14.9 70 151-245 207-282 (497)
87 PRK07233 hypothetical protein; 98.9 6.5E-07 1.4E-11 95.9 27.2 59 45-104 1-74 (434)
88 PRK11101 glpA sn-glycerol-3-ph 98.9 5.4E-08 1.2E-12 107.1 18.4 74 151-245 145-220 (546)
89 PRK13339 malate:quinone oxidor 98.9 7.1E-08 1.5E-12 103.8 18.7 76 150-246 179-257 (497)
90 PRK01747 mnmC bifunctional tRN 98.9 1.3E-08 2.9E-13 114.7 13.6 36 43-78 260-295 (662)
91 COG0578 GlpA Glycerol-3-phosph 98.9 6.5E-07 1.4E-11 95.5 24.8 183 41-244 10-233 (532)
92 TIGR00275 flavoprotein, HI0933 98.9 3.5E-09 7.7E-14 112.0 7.7 149 47-237 1-160 (400)
93 PLN02464 glycerol-3-phosphate 98.9 1.5E-07 3.3E-12 104.9 20.6 73 151-244 228-304 (627)
94 TIGR01292 TRX_reduct thioredox 98.8 3.1E-08 6.8E-13 100.5 12.8 112 44-237 1-112 (300)
95 PRK08274 tricarballylate dehyd 98.8 2.8E-08 6E-13 107.7 12.6 37 41-77 2-38 (466)
96 PRK06481 fumarate reductase fl 98.8 1.4E-07 3.1E-12 102.9 17.3 38 41-78 59-96 (506)
97 PLN02661 Putative thiazole syn 98.8 1.1E-07 2.3E-12 96.8 14.9 38 41-78 90-128 (357)
98 PRK07804 L-aspartate oxidase; 98.8 2.2E-07 4.9E-12 102.1 18.5 38 41-78 14-51 (541)
99 COG2072 TrkA Predicted flavopr 98.8 5.4E-08 1.2E-12 104.0 12.9 40 39-78 4-44 (443)
100 PRK07121 hypothetical protein; 98.8 7.8E-08 1.7E-12 104.8 14.3 38 41-78 18-55 (492)
101 TIGR00551 nadB L-aspartate oxi 98.8 1.5E-07 3.3E-12 102.3 16.5 64 155-241 128-193 (488)
102 PRK15317 alkyl hydroperoxide r 98.8 5.7E-08 1.2E-12 106.4 13.2 114 41-237 209-322 (517)
103 PRK12416 protoporphyrinogen ox 98.8 1.1E-06 2.3E-11 95.2 22.6 60 45-105 3-83 (463)
104 PRK11883 protoporphyrinogen ox 98.8 3.8E-06 8.2E-11 90.5 26.5 59 45-104 2-77 (451)
105 PRK09078 sdhA succinate dehydr 98.7 3.1E-07 6.7E-12 102.1 18.2 39 39-77 8-46 (598)
106 PF01134 GIDA: Glucose inhibit 98.7 1.5E-07 3.2E-12 97.3 14.4 144 45-235 1-150 (392)
107 TIGR00562 proto_IX_ox protopor 98.7 5.3E-06 1.1E-10 89.8 27.4 61 44-105 3-82 (462)
108 KOG1399 Flavin-containing mono 98.7 5.8E-08 1.3E-12 102.6 11.7 147 42-236 5-152 (448)
109 TIGR03329 Phn_aa_oxid putative 98.7 1.4E-07 3.1E-12 101.9 14.8 37 41-77 22-60 (460)
110 PRK09231 fumarate reductase fl 98.7 2.6E-07 5.7E-12 102.3 17.2 38 41-78 2-41 (582)
111 PRK06854 adenylylsulfate reduc 98.7 3.6E-07 7.7E-12 101.7 18.1 38 41-78 9-48 (608)
112 PTZ00139 Succinate dehydrogena 98.7 3.8E-07 8.2E-12 101.6 18.1 38 41-78 27-64 (617)
113 KOG2820 FAD-dependent oxidored 98.7 2.9E-06 6.3E-11 83.8 21.5 48 41-88 5-52 (399)
114 PRK07057 sdhA succinate dehydr 98.7 5.7E-07 1.2E-11 99.8 18.5 39 39-77 8-46 (591)
115 PRK06175 L-aspartate oxidase; 98.7 4.2E-07 9.1E-12 97.2 16.7 36 42-78 3-38 (433)
116 PF00743 FMO-like: Flavin-bind 98.7 1.3E-07 2.8E-12 103.0 13.0 143 45-238 3-151 (531)
117 TIGR01812 sdhA_frdA_Gneg succi 98.7 4.2E-07 9E-12 100.8 17.2 34 45-78 1-34 (566)
118 TIGR03140 AhpF alkyl hydropero 98.7 1.3E-07 2.8E-12 103.6 12.8 114 41-237 210-323 (515)
119 PRK06452 sdhA succinate dehydr 98.7 7.5E-07 1.6E-11 98.5 18.5 38 40-77 2-39 (566)
120 PLN00128 Succinate dehydrogena 98.7 7.9E-07 1.7E-11 99.2 18.8 37 42-78 49-85 (635)
121 PLN02612 phytoene desaturase 98.7 1.8E-05 4E-10 87.5 29.4 63 42-105 92-170 (567)
122 PRK07573 sdhA succinate dehydr 98.7 8.2E-07 1.8E-11 99.3 18.5 38 41-78 33-70 (640)
123 PRK07843 3-ketosteroid-delta-1 98.7 3.8E-07 8.3E-12 100.6 15.6 41 38-78 2-42 (557)
124 TIGR01176 fum_red_Fp fumarate 98.7 6.4E-07 1.4E-11 99.1 17.3 37 42-78 2-40 (580)
125 TIGR01813 flavo_cyto_c flavocy 98.7 1.5E-07 3.3E-12 101.1 12.1 34 45-78 1-35 (439)
126 PLN02268 probable polyamine ox 98.7 1.1E-05 2.4E-10 86.7 26.4 35 44-78 1-35 (435)
127 PRK06069 sdhA succinate dehydr 98.7 6.2E-07 1.4E-11 99.5 17.0 40 39-78 1-43 (577)
128 COG0492 TrxB Thioredoxin reduc 98.6 2.6E-07 5.6E-12 93.4 11.9 34 42-75 2-36 (305)
129 TIGR03364 HpnW_proposed FAD de 98.6 2.9E-07 6.3E-12 96.4 12.7 34 44-77 1-34 (365)
130 PF00890 FAD_binding_2: FAD bi 98.6 4.9E-07 1.1E-11 96.5 14.6 64 154-238 140-204 (417)
131 PLN02676 polyamine oxidase 98.6 7.5E-06 1.6E-10 88.9 23.8 37 42-78 25-62 (487)
132 COG3380 Predicted NAD/FAD-depe 98.6 1.8E-07 3.9E-12 89.5 9.6 53 45-97 3-67 (331)
133 PRK05945 sdhA succinate dehydr 98.6 8.6E-07 1.9E-11 98.3 16.7 36 42-77 2-39 (575)
134 PRK08275 putative oxidoreducta 98.6 1.1E-06 2.3E-11 97.2 17.2 38 41-78 7-46 (554)
135 PRK07803 sdhA succinate dehydr 98.6 1E-06 2.3E-11 98.4 17.2 39 40-78 5-43 (626)
136 PRK08205 sdhA succinate dehydr 98.6 1.5E-06 3.2E-11 96.5 18.2 37 40-77 2-38 (583)
137 PRK05335 tRNA (uracil-5-)-meth 98.6 3E-07 6.6E-12 95.9 11.3 101 44-168 3-112 (436)
138 PRK09077 L-aspartate oxidase; 98.6 1.2E-06 2.7E-11 96.2 16.8 38 40-78 5-42 (536)
139 TIGR03143 AhpF_homolog putativ 98.6 4.3E-07 9.2E-12 100.3 13.0 34 42-75 3-36 (555)
140 COG0665 DadA Glycine/D-amino a 98.6 6.2E-06 1.3E-10 86.9 21.4 38 41-78 2-39 (387)
141 PRK08958 sdhA succinate dehydr 98.6 2.1E-06 4.5E-11 95.3 18.2 38 41-78 5-42 (588)
142 PRK08626 fumarate reductase fl 98.6 1.9E-06 4.2E-11 96.6 18.0 40 39-78 1-40 (657)
143 PRK06263 sdhA succinate dehydr 98.5 2.7E-06 5.8E-11 93.8 17.7 36 41-77 5-40 (543)
144 TIGR00136 gidA glucose-inhibit 98.5 1.6E-06 3.6E-11 94.2 15.4 146 44-237 1-154 (617)
145 PRK08401 L-aspartate oxidase; 98.5 1.8E-06 4E-11 93.3 15.8 34 44-77 2-35 (466)
146 PRK08071 L-aspartate oxidase; 98.5 2.2E-06 4.7E-11 93.6 16.1 35 43-78 3-37 (510)
147 PRK08641 sdhA succinate dehydr 98.5 3.8E-06 8.3E-11 93.3 18.2 36 43-78 3-38 (589)
148 PLN02815 L-aspartate oxidase 98.5 4.1E-06 8.9E-11 92.7 17.7 38 40-78 26-63 (594)
149 PF00070 Pyr_redox: Pyridine n 98.5 2E-06 4.4E-11 68.9 11.2 34 45-78 1-34 (80)
150 PLN02328 lysine-specific histo 98.5 5.6E-05 1.2E-09 85.4 26.5 38 41-78 236-273 (808)
151 PRK06134 putative FAD-binding 98.5 1.6E-06 3.5E-11 96.2 13.6 39 40-78 9-47 (581)
152 PRK12837 3-ketosteroid-delta-1 98.4 1E-06 2.2E-11 96.5 10.9 36 42-78 6-41 (513)
153 PRK07512 L-aspartate oxidase; 98.4 3.7E-06 8.1E-11 91.9 14.7 38 38-77 4-41 (513)
154 PLN02568 polyamine oxidase 98.4 3.1E-06 6.8E-11 92.6 14.0 39 40-78 2-45 (539)
155 KOG2853 Possible oxidoreductas 98.4 6.7E-05 1.5E-09 74.2 21.3 38 42-79 85-126 (509)
156 PRK10262 thioredoxin reductase 98.4 5E-06 1.1E-10 85.5 14.2 35 41-75 4-38 (321)
157 PRK12842 putative succinate de 98.4 2.4E-06 5.2E-11 94.8 12.4 38 41-78 7-44 (574)
158 PF13450 NAD_binding_8: NAD(P) 98.4 3.7E-07 8.1E-12 70.6 4.1 31 48-78 1-31 (68)
159 PRK09897 hypothetical protein; 98.4 1.6E-06 3.5E-11 94.2 10.4 35 44-78 2-38 (534)
160 PRK12844 3-ketosteroid-delta-1 98.4 3.2E-06 7E-11 93.3 12.6 37 42-78 5-41 (557)
161 PF06039 Mqo: Malate:quinone o 98.3 1.1E-05 2.3E-10 83.9 15.3 74 152-246 178-254 (488)
162 COG1231 Monoamine oxidase [Ami 98.3 4E-06 8.8E-11 86.6 12.2 38 41-78 5-42 (450)
163 PRK07395 L-aspartate oxidase; 98.3 6.5E-06 1.4E-10 90.6 14.7 37 41-78 7-43 (553)
164 PRK06370 mercuric reductase; V 98.3 8.3E-06 1.8E-10 88.3 14.5 36 40-75 2-37 (463)
165 TIGR01811 sdhA_Bsu succinate d 98.3 1.3E-05 2.7E-10 89.3 16.0 32 46-77 1-32 (603)
166 PRK05249 soluble pyridine nucl 98.3 1.1E-05 2.4E-10 87.2 15.3 40 39-78 1-40 (461)
167 COG1232 HemY Protoporphyrinoge 98.3 1.7E-05 3.7E-10 83.7 16.0 62 45-107 2-80 (444)
168 PF07992 Pyr_redox_2: Pyridine 98.3 1.1E-06 2.4E-11 83.5 6.7 33 45-77 1-33 (201)
169 PRK05976 dihydrolipoamide dehy 98.3 1.1E-05 2.4E-10 87.6 14.7 35 41-75 2-36 (472)
170 PRK06467 dihydrolipoamide dehy 98.3 1.4E-05 3E-10 86.7 15.2 36 41-76 2-37 (471)
171 TIGR01424 gluta_reduc_2 glutat 98.3 1.1E-05 2.5E-10 86.7 14.0 33 43-75 2-34 (446)
172 PRK14694 putative mercuric red 98.3 2E-05 4.2E-10 85.5 15.7 35 41-75 4-38 (468)
173 PRK12834 putative FAD-binding 98.3 3E-05 6.5E-10 85.7 17.4 37 41-77 2-38 (549)
174 PRK06416 dihydrolipoamide dehy 98.2 1.7E-05 3.7E-10 85.9 15.0 35 42-76 3-37 (462)
175 PLN02507 glutathione reductase 98.2 1.2E-05 2.6E-10 87.6 13.8 35 41-75 23-57 (499)
176 PRK12843 putative FAD-binding 98.2 4.2E-05 9.2E-10 84.9 18.2 38 41-78 14-51 (578)
177 TIGR01421 gluta_reduc_1 glutat 98.2 1.3E-05 2.8E-10 86.4 13.4 33 43-75 2-34 (450)
178 PLN03000 amine oxidase 98.2 0.00047 1E-08 78.3 25.7 37 42-78 183-219 (881)
179 KOG2844 Dimethylglycine dehydr 98.2 1.8E-05 3.9E-10 84.6 13.5 190 16-238 12-244 (856)
180 PRK12839 hypothetical protein; 98.2 5.8E-05 1.3E-09 83.5 18.3 40 39-78 4-43 (572)
181 PRK12835 3-ketosteroid-delta-1 98.2 4E-05 8.8E-10 85.0 17.0 38 41-78 9-46 (584)
182 PRK06327 dihydrolipoamide dehy 98.2 2.4E-05 5.2E-10 84.9 14.9 33 42-74 3-35 (475)
183 PRK12845 3-ketosteroid-delta-1 98.2 2E-05 4.3E-10 86.9 14.2 37 41-78 14-50 (564)
184 PRK06115 dihydrolipoamide dehy 98.2 1.7E-05 3.7E-10 85.9 13.2 34 43-76 3-36 (466)
185 TIGR02485 CobZ_N-term precorri 98.1 1.5E-05 3.3E-10 85.5 11.7 30 48-77 1-30 (432)
186 PF13434 K_oxygenase: L-lysine 98.1 1E-06 2.2E-11 91.0 2.3 149 43-235 2-157 (341)
187 TIGR02462 pyranose_ox pyranose 98.1 8.3E-05 1.8E-09 80.9 16.5 54 44-97 1-60 (544)
188 TIGR02061 aprA adenosine phosp 98.1 1.8E-05 3.9E-10 87.8 11.3 34 45-78 1-38 (614)
189 KOG0042 Glycerol-3-phosphate d 98.1 4.3E-05 9.3E-10 80.0 13.2 39 40-78 64-102 (680)
190 PRK04965 NADH:flavorubredoxin 98.1 5E-05 1.1E-09 79.9 13.9 107 44-246 142-250 (377)
191 COG1233 Phytoene dehydrogenase 98.1 3.3E-06 7.2E-11 91.7 4.9 36 43-78 3-38 (487)
192 TIGR01350 lipoamide_DH dihydro 98.0 4.1E-05 8.8E-10 82.9 12.8 31 44-74 2-32 (461)
193 PTZ00306 NADH-dependent fumara 98.0 9.9E-05 2.1E-09 88.3 16.7 39 40-78 406-444 (1167)
194 PRK13748 putative mercuric red 98.0 8.6E-05 1.9E-09 82.4 15.3 35 41-75 96-130 (561)
195 PRK13977 myosin-cross-reactive 98.0 0.00012 2.5E-09 79.4 15.6 36 43-78 22-61 (576)
196 COG1053 SdhA Succinate dehydro 98.0 6.4E-05 1.4E-09 82.3 13.6 40 40-79 3-42 (562)
197 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 3.2E-05 7E-10 81.3 10.8 35 44-78 1-35 (433)
198 PRK12779 putative bifunctional 98.0 1.3E-05 2.9E-10 93.0 8.5 36 43-78 306-341 (944)
199 PRK14727 putative mercuric red 98.0 0.00017 3.7E-09 78.4 16.5 40 38-77 11-50 (479)
200 PRK13800 putative oxidoreducta 98.0 0.00015 3.3E-09 84.6 17.1 37 41-77 11-47 (897)
201 PTZ00052 thioredoxin reductase 98.0 2.9E-05 6.2E-10 84.7 10.4 34 42-75 4-37 (499)
202 PRK09564 coenzyme A disulfide 98.0 3.7E-05 8.1E-10 82.8 10.7 34 45-78 2-37 (444)
203 KOG2665 Predicted FAD-dependen 98.0 5.9E-05 1.3E-09 73.9 10.6 54 40-93 45-109 (453)
204 COG0029 NadB Aspartate oxidase 97.9 0.00014 3E-09 76.0 13.8 33 45-78 9-41 (518)
205 TIGR02731 phytoene_desat phyto 97.9 1.2E-05 2.6E-10 86.9 5.9 60 45-105 1-76 (453)
206 PRK13512 coenzyme A disulfide 97.9 7.1E-05 1.5E-09 80.4 11.7 35 45-79 3-39 (438)
207 PRK07208 hypothetical protein; 97.9 1.1E-05 2.4E-10 87.7 5.6 38 41-78 2-39 (479)
208 PF13454 NAD_binding_9: FAD-NA 97.9 4.7E-05 1E-09 69.5 8.6 31 47-77 1-36 (156)
209 TIGR01372 soxA sarcosine oxida 97.9 0.00014 3E-09 85.8 14.0 37 42-78 162-198 (985)
210 PRK06115 dihydrolipoamide dehy 97.9 0.00018 4E-09 77.9 13.8 103 43-237 174-276 (466)
211 TIGR01350 lipoamide_DH dihydro 97.9 0.00021 4.5E-09 77.4 14.1 101 43-238 170-270 (461)
212 PRK08010 pyridine nucleotide-d 97.9 1.5E-05 3.3E-10 85.6 5.2 35 43-77 3-37 (441)
213 PRK05249 soluble pyridine nucl 97.9 0.00017 3.8E-09 78.0 13.4 100 43-239 175-274 (461)
214 COG1249 Lpd Pyruvate/2-oxoglut 97.8 0.00027 5.9E-09 75.4 14.3 110 41-246 171-280 (454)
215 PRK06116 glutathione reductase 97.8 1.6E-05 3.4E-10 85.8 5.1 34 42-75 3-36 (450)
216 PRK07251 pyridine nucleotide-d 97.8 1.7E-05 3.8E-10 85.1 5.0 35 43-77 3-37 (438)
217 KOG1335 Dihydrolipoamide dehyd 97.8 0.00083 1.8E-08 67.8 16.2 55 189-246 267-322 (506)
218 PLN02852 ferredoxin-NADP+ redu 97.8 2.8E-05 6.1E-10 83.7 6.4 39 40-78 23-63 (491)
219 PRK06416 dihydrolipoamide dehy 97.8 0.00026 5.7E-09 76.6 14.1 100 44-237 173-272 (462)
220 PRK09754 phenylpropionate diox 97.8 0.00019 4.2E-09 76.0 12.6 98 44-238 145-242 (396)
221 KOG0029 Amine oxidase [Seconda 97.8 2.4E-05 5.2E-10 84.4 5.3 38 41-78 13-50 (501)
222 TIGR02733 desat_CrtD C-3',4' d 97.8 2.2E-05 4.8E-10 85.7 5.1 35 44-78 2-36 (492)
223 TIGR01438 TGR thioredoxin and 97.8 0.00025 5.5E-09 77.0 13.1 33 43-75 2-34 (484)
224 PRK06327 dihydrolipoamide dehy 97.8 0.0003 6.4E-09 76.5 13.6 102 44-238 184-285 (475)
225 TIGR02730 carot_isom carotene 97.8 2.6E-05 5.7E-10 85.1 5.1 35 44-78 1-35 (493)
226 PRK07845 flavoprotein disulfid 97.8 0.0003 6.5E-09 76.2 13.2 32 45-76 3-34 (466)
227 PLN02576 protoporphyrinogen ox 97.7 3.4E-05 7.3E-10 84.4 5.7 38 41-78 10-48 (496)
228 PRK06912 acoL dihydrolipoamide 97.7 0.00055 1.2E-08 74.0 15.0 101 43-239 170-270 (458)
229 PRK09754 phenylpropionate diox 97.7 0.0002 4.3E-09 75.9 11.1 35 44-78 4-40 (396)
230 PLN02487 zeta-carotene desatur 97.7 6.8E-05 1.5E-09 82.4 7.6 63 43-106 75-153 (569)
231 COG3075 GlpB Anaerobic glycero 97.7 3.6E-05 7.8E-10 75.9 4.8 51 43-99 2-52 (421)
232 TIGR02053 MerA mercuric reduct 97.7 0.00044 9.5E-09 74.9 13.7 101 44-238 167-267 (463)
233 PRK07818 dihydrolipoamide dehy 97.7 3.6E-05 7.8E-10 83.4 5.1 34 42-75 3-36 (466)
234 PRK07818 dihydrolipoamide dehy 97.7 0.00048 1E-08 74.6 13.8 102 44-238 173-274 (466)
235 PRK06467 dihydrolipoamide dehy 97.7 0.00051 1.1E-08 74.5 13.9 102 44-239 175-276 (471)
236 PRK06370 mercuric reductase; V 97.7 0.0005 1.1E-08 74.4 13.8 101 44-238 172-272 (463)
237 TIGR02732 zeta_caro_desat caro 97.7 4.9E-05 1.1E-09 82.3 6.0 61 45-106 1-77 (474)
238 PRK06912 acoL dihydrolipoamide 97.7 0.00081 1.8E-08 72.7 15.2 32 45-76 2-33 (458)
239 TIGR00031 UDP-GALP_mutase UDP- 97.7 4.5E-05 9.7E-10 79.5 5.0 35 44-78 2-36 (377)
240 PRK06292 dihydrolipoamide dehy 97.7 4.2E-05 9.2E-10 82.7 4.9 33 42-74 2-34 (460)
241 TIGR02734 crtI_fam phytoene de 97.6 3.9E-05 8.5E-10 84.0 4.5 33 46-78 1-33 (502)
242 PTZ00318 NADH dehydrogenase-li 97.6 0.00031 6.6E-09 75.2 11.1 38 41-78 8-45 (424)
243 KOG0404 Thioredoxin reductase 97.6 0.00021 4.6E-09 66.7 8.2 35 41-75 6-40 (322)
244 TIGR03315 Se_ygfK putative sel 97.6 5.6E-05 1.2E-09 87.4 5.4 37 42-78 536-572 (1012)
245 COG3349 Uncharacterized conser 97.6 5.3E-05 1.1E-09 79.9 4.7 35 45-79 2-36 (485)
246 PTZ00058 glutathione reductase 97.6 5.4E-05 1.2E-09 83.2 5.0 37 39-75 44-80 (561)
247 COG1148 HdrA Heterodisulfide r 97.6 5.8E-05 1.3E-09 78.0 4.7 37 43-79 124-160 (622)
248 PRK06116 glutathione reductase 97.6 0.00061 1.3E-08 73.5 13.0 98 43-237 167-265 (450)
249 PRK07251 pyridine nucleotide-d 97.6 0.00068 1.5E-08 72.8 13.0 36 43-78 157-192 (438)
250 TIGR02053 MerA mercuric reduct 97.6 6.3E-05 1.4E-09 81.4 4.9 33 44-76 1-33 (463)
251 PRK12831 putative oxidoreducta 97.6 8.2E-05 1.8E-09 80.4 5.4 37 42-78 139-175 (464)
252 PRK05976 dihydrolipoamide dehy 97.6 0.001 2.2E-08 72.2 13.8 36 43-78 180-215 (472)
253 PTZ00363 rab-GDP dissociation 97.5 7.6E-05 1.6E-09 79.6 4.8 38 41-78 2-39 (443)
254 COG3634 AhpF Alkyl hydroperoxi 97.5 0.00016 3.6E-09 71.7 6.5 32 41-72 209-240 (520)
255 TIGR03169 Nterm_to_SelD pyridi 97.5 0.00049 1.1E-08 72.0 10.4 34 45-78 1-37 (364)
256 TIGR01424 gluta_reduc_2 glutat 97.5 0.00099 2.1E-08 71.8 12.8 98 43-237 166-263 (446)
257 PRK04965 NADH:flavorubredoxin 97.5 0.00077 1.7E-08 70.9 11.6 35 44-78 3-39 (377)
258 COG0562 Glf UDP-galactopyranos 97.5 0.00012 2.6E-09 72.3 4.7 35 44-78 2-36 (374)
259 PRK07845 flavoprotein disulfid 97.5 0.0012 2.7E-08 71.4 13.3 98 44-238 178-275 (466)
260 PRK06567 putative bifunctional 97.5 0.00014 3.1E-09 82.8 6.0 35 42-76 382-416 (1028)
261 TIGR01438 TGR thioredoxin and 97.5 0.0017 3.7E-08 70.6 14.3 98 44-236 181-278 (484)
262 PLN02507 glutathione reductase 97.5 0.001 2.2E-08 72.6 12.6 98 44-238 204-301 (499)
263 PRK07846 mycothione reductase; 97.5 0.0011 2.3E-08 71.6 12.4 35 43-77 166-200 (451)
264 TIGR01316 gltA glutamate synth 97.5 0.00015 3.2E-09 78.1 5.7 38 41-78 131-168 (449)
265 TIGR01421 gluta_reduc_1 glutat 97.4 0.0013 2.8E-08 71.0 12.6 99 43-237 166-265 (450)
266 PF00732 GMC_oxred_N: GMC oxid 97.4 0.00011 2.3E-09 74.6 4.0 36 44-79 1-37 (296)
267 PRK08010 pyridine nucleotide-d 97.4 0.0017 3.7E-08 69.9 13.4 98 44-239 159-256 (441)
268 PTZ00188 adrenodoxin reductase 97.4 0.00021 4.7E-09 76.0 6.1 37 43-79 39-76 (506)
269 PRK09853 putative selenate red 97.4 0.00016 3.4E-09 83.4 5.4 36 43-78 539-574 (1019)
270 PRK02106 choline dehydrogenase 97.4 0.00016 3.5E-09 80.2 5.3 39 39-77 1-40 (560)
271 PRK05329 anaerobic glycerol-3- 97.4 0.00018 3.9E-09 76.2 5.2 34 43-76 2-35 (422)
272 COG2509 Uncharacterized FAD-de 97.4 0.0013 2.7E-08 68.2 11.0 40 39-78 14-58 (486)
273 PRK12769 putative oxidoreducta 97.4 0.00018 3.9E-09 81.2 5.4 36 43-78 327-362 (654)
274 KOG1276 Protoporphyrinogen oxi 97.4 0.00021 4.6E-09 73.1 5.3 65 42-107 10-95 (491)
275 PRK06292 dihydrolipoamide dehy 97.4 0.0022 4.7E-08 69.5 13.6 36 43-78 169-204 (460)
276 PRK12810 gltD glutamate syntha 97.4 0.00021 4.5E-09 77.5 5.5 37 42-78 142-178 (471)
277 PRK12775 putative trifunctiona 97.4 0.0002 4.2E-09 84.2 5.6 36 43-78 430-465 (1006)
278 KOG2852 Possible oxidoreductas 97.4 0.0018 3.9E-08 63.0 10.9 34 44-77 11-50 (380)
279 TIGR03378 glycerol3P_GlpB glyc 97.3 0.00026 5.7E-09 74.3 5.3 49 44-98 1-49 (419)
280 PRK11749 dihydropyrimidine deh 97.3 0.00028 6E-09 76.3 5.6 37 42-78 139-175 (457)
281 COG3573 Predicted oxidoreducta 97.3 0.00036 7.9E-09 69.0 5.8 44 41-84 3-46 (552)
282 PLN02546 glutathione reductase 97.3 0.00031 6.8E-09 77.3 6.1 34 41-74 77-110 (558)
283 TIGR02374 nitri_red_nirB nitri 97.3 0.0015 3.2E-08 75.2 11.6 107 44-246 141-249 (785)
284 TIGR03385 CoA_CoA_reduc CoA-di 97.3 0.0027 5.7E-08 68.1 12.7 34 44-77 138-171 (427)
285 PRK12778 putative bifunctional 97.3 0.00026 5.7E-09 81.2 5.3 37 42-78 430-466 (752)
286 TIGR03452 mycothione_red mycot 97.3 0.0032 6.9E-08 67.9 13.1 35 43-77 169-203 (452)
287 PLN02529 lysine-specific histo 97.3 0.00034 7.5E-09 78.7 5.7 36 42-77 159-194 (738)
288 COG0446 HcaD Uncharacterized N 97.3 0.0026 5.7E-08 67.3 12.2 98 44-237 137-237 (415)
289 COG3486 IucD Lysine/ornithine 97.2 0.0012 2.5E-08 67.6 8.6 158 39-240 1-160 (436)
290 PRK14694 putative mercuric red 97.2 0.0032 7E-08 68.2 12.6 32 44-75 179-210 (468)
291 TIGR01318 gltD_gamma_fam gluta 97.2 0.00043 9.3E-09 74.9 5.6 37 42-78 140-176 (467)
292 PRK14727 putative mercuric red 97.2 0.0038 8.3E-08 67.9 13.1 97 44-239 189-285 (479)
293 PRK09564 coenzyme A disulfide 97.2 0.0032 7E-08 67.7 12.5 34 44-77 150-183 (444)
294 PRK12814 putative NADPH-depend 97.2 0.00043 9.4E-09 78.0 5.4 36 43-78 193-228 (652)
295 COG1249 Lpd Pyruvate/2-oxoglut 97.2 0.00042 9.2E-09 73.9 4.9 36 41-76 2-37 (454)
296 PRK13512 coenzyme A disulfide 97.2 0.0034 7.4E-08 67.4 12.0 34 44-77 149-182 (438)
297 PRK14989 nitrite reductase sub 97.2 0.0029 6.4E-08 73.1 12.1 107 44-246 146-256 (847)
298 TIGR01423 trypano_reduc trypan 97.2 0.0037 8.1E-08 67.9 12.3 98 44-238 188-289 (486)
299 PRK14989 nitrite reductase sub 97.2 0.0019 4.2E-08 74.5 10.5 36 44-79 4-43 (847)
300 PTZ00052 thioredoxin reductase 97.1 0.0039 8.6E-08 68.1 12.4 31 44-74 183-213 (499)
301 COG4529 Uncharacterized protei 97.1 0.0032 7E-08 66.1 10.8 35 44-78 2-39 (474)
302 PRK12770 putative glutamate sy 97.1 0.00065 1.4E-08 70.8 5.6 37 42-78 17-53 (352)
303 PTZ00058 glutathione reductase 97.1 0.0045 9.8E-08 68.2 12.3 35 43-77 237-271 (561)
304 TIGR01423 trypano_reduc trypan 97.1 0.00047 1E-08 74.8 4.6 34 42-75 2-36 (486)
305 PTZ00153 lipoamide dehydrogena 97.1 0.00067 1.4E-08 75.9 5.8 33 43-75 116-148 (659)
306 TIGR02374 nitri_red_nirB nitri 97.1 0.0018 4E-08 74.5 9.5 33 46-78 1-36 (785)
307 COG0445 GidA Flavin-dependent 97.1 0.0019 4.1E-08 68.4 8.6 36 42-77 3-38 (621)
308 KOG3855 Monooxygenase involved 97.1 3.2E-05 6.9E-10 78.6 -4.3 80 344-431 232-311 (481)
309 PRK07846 mycothione reductase; 97.1 0.0044 9.5E-08 66.9 11.7 31 43-75 1-31 (451)
310 PRK13748 putative mercuric red 97.1 0.0053 1.1E-07 68.3 12.6 32 44-75 271-302 (561)
311 TIGR01292 TRX_reduct thioredox 97.1 0.0056 1.2E-07 61.8 11.9 33 44-76 142-174 (300)
312 PRK12809 putative oxidoreducta 97.1 0.00069 1.5E-08 76.3 5.5 36 43-78 310-345 (639)
313 TIGR03140 AhpF alkyl hydropero 97.0 0.0062 1.3E-07 66.9 12.8 33 44-76 353-385 (515)
314 KOG2404 Fumarate reductase, fl 97.0 0.0035 7.6E-08 62.0 9.3 34 45-78 11-44 (477)
315 PRK12771 putative glutamate sy 97.0 0.00063 1.4E-08 75.5 4.8 36 43-78 137-172 (564)
316 TIGR03452 mycothione_red mycot 97.0 0.0033 7.1E-08 67.9 10.1 31 43-75 2-32 (452)
317 PF13434 K_oxygenase: L-lysine 97.0 0.008 1.7E-07 62.2 12.4 145 41-235 188-339 (341)
318 COG1206 Gid NAD(FAD)-utilizing 97.0 0.0029 6.3E-08 62.8 8.3 36 43-78 3-38 (439)
319 COG0493 GltD NADPH-dependent g 97.0 0.001 2.2E-08 71.1 5.5 35 44-78 124-158 (457)
320 PLN02785 Protein HOTHEAD 97.0 0.0013 2.9E-08 72.9 6.6 37 41-78 53-89 (587)
321 PRK15317 alkyl hydroperoxide r 96.9 0.0068 1.5E-07 66.6 12.0 34 44-77 352-385 (517)
322 PRK10262 thioredoxin reductase 96.9 0.0093 2E-07 61.2 12.3 34 44-77 147-180 (321)
323 TIGR01317 GOGAT_sm_gam glutama 96.9 0.001 2.2E-08 72.4 5.4 36 43-78 143-178 (485)
324 PTZ00153 lipoamide dehydrogena 96.9 0.0086 1.9E-07 67.1 12.7 35 44-78 313-347 (659)
325 COG2303 BetA Choline dehydroge 96.8 0.0013 2.8E-08 72.4 5.1 37 41-77 5-41 (542)
326 KOG3923 D-aspartate oxidase [A 96.8 0.13 2.8E-06 50.8 18.0 36 44-79 4-46 (342)
327 PTZ00318 NADH dehydrogenase-li 96.7 0.011 2.5E-07 63.1 11.5 33 45-77 175-221 (424)
328 PRK13984 putative oxidoreducta 96.7 0.002 4.4E-08 72.1 5.5 37 42-78 282-318 (604)
329 PLN02976 amine oxidase 96.7 0.0019 4.2E-08 76.1 5.1 36 43-78 693-728 (1713)
330 TIGR01810 betA choline dehydro 96.7 0.0015 3.3E-08 72.0 4.1 33 45-77 1-34 (532)
331 PLN02546 glutathione reductase 96.6 0.017 3.8E-07 63.7 11.7 35 43-77 252-286 (558)
332 COG2907 Predicted NAD/FAD-bind 96.5 0.0036 7.9E-08 62.6 4.9 35 43-78 8-42 (447)
333 KOG2311 NAD/FAD-utilizing prot 96.4 0.02 4.4E-07 59.6 10.0 36 41-76 26-61 (679)
334 KOG1800 Ferredoxin/adrenodoxin 96.4 0.0038 8.2E-08 63.2 4.6 35 44-78 21-57 (468)
335 TIGR03197 MnmC_Cterm tRNA U-34 96.4 0.02 4.4E-07 60.2 10.5 61 151-238 131-191 (381)
336 PRK12770 putative glutamate sy 96.3 0.021 4.5E-07 59.5 10.1 33 44-76 173-206 (352)
337 KOG0685 Flavin-containing amin 96.3 0.0033 7.2E-08 65.6 3.9 38 41-78 19-57 (498)
338 KOG4254 Phytoene desaturase [C 96.3 0.0032 7E-08 65.0 3.6 35 41-75 12-46 (561)
339 COG1252 Ndh NADH dehydrogenase 96.3 0.021 4.6E-07 59.7 9.7 36 44-79 4-41 (405)
340 COG1252 Ndh NADH dehydrogenase 96.1 0.023 4.9E-07 59.5 9.0 51 157-236 211-261 (405)
341 PF06100 Strep_67kDa_ant: Stre 96.0 0.47 1E-05 50.6 18.0 35 44-78 3-41 (500)
342 TIGR03377 glycerol3P_GlpA glyc 96.0 0.15 3.2E-06 56.1 15.2 74 151-245 124-199 (516)
343 TIGR01316 gltA glutamate synth 96.0 0.056 1.2E-06 58.3 11.3 33 44-76 273-305 (449)
344 TIGR03143 AhpF_homolog putativ 95.9 0.062 1.3E-06 59.6 11.6 34 44-77 144-177 (555)
345 KOG0399 Glutamate synthase [Am 95.8 0.0084 1.8E-07 68.0 4.3 36 43-78 1785-1820(2142)
346 TIGR02352 thiamin_ThiO glycine 95.5 0.51 1.1E-05 48.3 16.2 62 151-238 133-194 (337)
347 PRK12831 putative oxidoreducta 95.4 0.11 2.3E-06 56.3 11.1 33 44-76 282-314 (464)
348 KOG2960 Protein involved in th 95.4 0.0041 8.8E-08 57.9 -0.1 36 43-78 76-113 (328)
349 PRK11749 dihydropyrimidine deh 95.4 0.15 3.2E-06 55.2 12.0 33 44-76 274-307 (457)
350 COG1251 NirB NAD(P)H-nitrite r 95.3 0.044 9.6E-07 60.4 7.4 34 44-77 146-179 (793)
351 TIGR03169 Nterm_to_SelD pyridi 95.1 0.2 4.2E-06 52.4 11.6 42 359-400 272-313 (364)
352 TIGR03467 HpnE squalene-associ 95.0 1.8 4E-05 45.7 19.0 44 188-237 211-254 (419)
353 PF01210 NAD_Gly3P_dh_N: NAD-d 95.0 0.025 5.4E-07 51.6 3.9 32 45-76 1-32 (157)
354 KOG1238 Glucose dehydrogenase/ 94.9 0.025 5.4E-07 61.5 4.2 38 41-78 55-93 (623)
355 PRK06249 2-dehydropantoate 2-r 94.7 0.039 8.4E-07 56.5 4.9 35 42-76 4-38 (313)
356 PRK02705 murD UDP-N-acetylmura 94.7 0.033 7.2E-07 60.2 4.6 34 45-78 2-35 (459)
357 PF00996 GDI: GDP dissociation 94.7 0.036 7.8E-07 58.8 4.6 38 41-78 2-39 (438)
358 PRK12810 gltD glutamate syntha 94.7 0.31 6.6E-06 52.9 12.0 32 44-75 282-314 (471)
359 KOG4716 Thioredoxin reductase 94.7 0.98 2.1E-05 45.5 14.0 34 42-75 18-51 (503)
360 PRK12814 putative NADPH-depend 94.6 0.28 6.2E-06 55.4 11.9 33 44-76 324-357 (652)
361 PF02737 3HCDH_N: 3-hydroxyacy 94.6 0.033 7.2E-07 52.0 3.5 33 45-77 1-33 (180)
362 COG0569 TrkA K+ transport syst 94.5 0.041 8.8E-07 53.4 4.2 57 45-102 2-65 (225)
363 PRK12778 putative bifunctional 94.4 0.39 8.4E-06 55.4 12.6 33 44-76 571-604 (752)
364 PRK01438 murD UDP-N-acetylmura 94.4 0.042 9E-07 59.8 4.4 33 44-76 17-49 (480)
365 TIGR01372 soxA sarcosine oxida 94.4 0.37 8E-06 57.2 12.5 33 44-76 318-351 (985)
366 TIGR03378 glycerol3P_GlpB glyc 94.2 0.97 2.1E-05 47.8 13.8 65 151-238 259-324 (419)
367 PF03721 UDPG_MGDP_dh_N: UDP-g 94.1 0.038 8.2E-07 51.8 2.8 33 45-77 2-34 (185)
368 PF02558 ApbA: Ketopantoate re 94.0 0.071 1.5E-06 48.0 4.3 31 46-76 1-31 (151)
369 PRK14106 murD UDP-N-acetylmura 93.6 0.09 1.9E-06 56.7 5.0 34 43-76 5-38 (450)
370 KOG3851 Sulfide:quinone oxidor 93.6 0.53 1.1E-05 47.0 9.7 39 40-78 36-76 (446)
371 TIGR03862 flavo_PP4765 unchara 93.6 0.21 4.4E-06 52.2 7.4 56 155-237 86-141 (376)
372 KOG1336 Monodehydroascorbate/f 93.4 0.7 1.5E-05 48.7 10.9 36 43-78 213-248 (478)
373 PF01593 Amino_oxidase: Flavin 93.4 1.2 2.7E-05 46.7 13.5 44 189-239 224-267 (450)
374 PRK05675 sdhA succinate dehydr 93.4 1.7 3.6E-05 48.5 14.7 64 155-239 126-191 (570)
375 PRK06129 3-hydroxyacyl-CoA deh 93.3 0.085 1.8E-06 53.8 4.1 33 45-77 4-36 (308)
376 PRK05708 2-dehydropantoate 2-r 93.2 0.11 2.3E-06 53.0 4.7 33 44-76 3-35 (305)
377 PF13478 XdhC_C: XdhC Rossmann 93.1 0.086 1.9E-06 46.7 3.3 33 46-78 1-33 (136)
378 TIGR01470 cysG_Nterm siroheme 93.0 0.14 3.1E-06 48.8 4.8 32 44-75 10-41 (205)
379 KOG2495 NADH-dehydrogenase (ub 93.0 0.35 7.5E-06 50.2 7.7 42 189-237 288-329 (491)
380 PRK07819 3-hydroxybutyryl-CoA 92.8 0.11 2.4E-06 52.4 4.0 34 45-78 7-40 (286)
381 PRK06719 precorrin-2 dehydroge 92.7 0.16 3.4E-06 46.3 4.5 31 43-73 13-43 (157)
382 TIGR02354 thiF_fam2 thiamine b 92.6 0.18 3.9E-06 47.9 4.8 34 43-76 21-55 (200)
383 PRK06522 2-dehydropantoate 2-r 92.5 0.13 2.8E-06 52.1 4.2 32 45-76 2-33 (304)
384 PRK12921 2-dehydropantoate 2-r 92.5 0.15 3.2E-06 51.8 4.5 30 45-74 2-31 (305)
385 PRK08293 3-hydroxybutyryl-CoA 92.5 0.14 3E-06 51.7 4.2 33 45-77 5-37 (287)
386 PRK07530 3-hydroxybutyryl-CoA 92.4 0.15 3.3E-06 51.5 4.5 34 44-77 5-38 (292)
387 PF02254 TrkA_N: TrkA-N domain 92.4 0.14 3.1E-06 43.6 3.7 32 46-77 1-32 (116)
388 PRK09424 pntA NAD(P) transhydr 92.2 0.13 2.8E-06 55.7 3.9 35 43-77 165-199 (509)
389 TIGR00518 alaDH alanine dehydr 92.1 0.16 3.4E-06 53.2 4.2 34 43-76 167-200 (370)
390 PRK09260 3-hydroxybutyryl-CoA 92.1 0.16 3.5E-06 51.3 4.1 33 45-77 3-35 (288)
391 cd00401 AdoHcyase S-adenosyl-L 92.0 0.16 3.6E-06 53.5 4.2 34 44-77 203-236 (413)
392 PRK06035 3-hydroxyacyl-CoA deh 91.9 0.16 3.5E-06 51.3 4.0 33 45-77 5-37 (291)
393 cd05292 LDH_2 A subgroup of L- 91.9 0.19 4.1E-06 51.2 4.4 33 45-77 2-36 (308)
394 PF13241 NAD_binding_7: Putati 91.8 0.12 2.6E-06 43.3 2.4 34 43-76 7-40 (103)
395 PRK00066 ldh L-lactate dehydro 91.7 0.26 5.6E-06 50.4 5.2 37 41-77 4-42 (315)
396 PF00899 ThiF: ThiF family; I 91.7 0.2 4.3E-06 44.3 3.8 34 43-76 2-36 (135)
397 PRK06718 precorrin-2 dehydroge 91.6 0.25 5.4E-06 47.0 4.6 32 43-74 10-41 (202)
398 PRK05808 3-hydroxybutyryl-CoA 91.6 0.19 4.1E-06 50.6 4.0 34 45-78 5-38 (282)
399 PRK07066 3-hydroxybutyryl-CoA 91.6 0.25 5.4E-06 50.5 4.9 33 45-77 9-41 (321)
400 PF01262 AlaDh_PNT_C: Alanine 91.6 0.23 5E-06 45.7 4.3 34 43-76 20-53 (168)
401 PRK15116 sulfur acceptor prote 91.6 0.27 5.8E-06 48.8 4.9 36 42-77 29-65 (268)
402 PRK12475 thiamine/molybdopteri 91.3 0.27 5.9E-06 50.7 4.9 36 41-76 22-58 (338)
403 PRK12769 putative oxidoreducta 91.3 1.3 2.7E-05 50.3 10.7 34 44-77 469-503 (654)
404 PF01488 Shikimate_DH: Shikima 91.3 0.32 7E-06 43.0 4.7 34 43-76 12-46 (135)
405 PRK04148 hypothetical protein; 91.1 0.2 4.2E-06 44.1 3.1 33 44-77 18-50 (134)
406 TIGR02356 adenyl_thiF thiazole 91.1 0.34 7.3E-06 46.1 5.0 36 41-76 19-55 (202)
407 COG1004 Ugd Predicted UDP-gluc 91.1 0.24 5.3E-06 51.0 4.1 34 45-78 2-35 (414)
408 TIGR01763 MalateDH_bact malate 91.0 0.3 6.5E-06 49.7 4.8 34 44-77 2-36 (305)
409 KOG1346 Programmed cell death 91.0 0.74 1.6E-05 47.6 7.4 50 190-246 409-460 (659)
410 TIGR01318 gltD_gamma_fam gluta 90.9 2 4.3E-05 46.6 11.3 34 44-77 283-317 (467)
411 PF00056 Ldh_1_N: lactate/mala 90.6 0.34 7.5E-06 43.2 4.3 34 44-77 1-37 (141)
412 PRK05329 anaerobic glycerol-3- 90.6 5.6 0.00012 42.4 14.1 191 14-236 107-317 (422)
413 PRK14620 NAD(P)H-dependent gly 90.5 0.27 5.8E-06 50.6 4.0 32 45-76 2-33 (326)
414 PRK07688 thiamine/molybdopteri 90.5 0.36 7.8E-06 49.9 4.9 35 42-76 23-58 (339)
415 PRK08229 2-dehydropantoate 2-r 90.5 0.33 7.2E-06 50.2 4.7 31 45-75 4-34 (341)
416 TIGR02731 phytoene_desat phyto 90.5 26 0.00056 37.6 19.6 50 190-243 229-281 (453)
417 PF13738 Pyr_redox_3: Pyridine 90.4 0.26 5.7E-06 46.5 3.5 34 43-76 167-200 (203)
418 TIGR02964 xanthine_xdhC xanthi 90.3 0.41 9E-06 47.0 4.9 37 42-78 99-135 (246)
419 PRK11064 wecC UDP-N-acetyl-D-m 90.3 0.28 6E-06 52.3 3.9 34 44-77 4-37 (415)
420 cd01080 NAD_bind_m-THF_DH_Cycl 90.1 0.41 8.9E-06 44.0 4.4 34 42-75 43-77 (168)
421 PTZ00082 L-lactate dehydrogena 90.0 0.48 1E-05 48.5 5.3 35 44-78 7-42 (321)
422 PRK06130 3-hydroxybutyryl-CoA 90.0 0.39 8.4E-06 49.0 4.6 33 45-77 6-38 (311)
423 cd01487 E1_ThiF_like E1_ThiF_l 90.0 0.48 1E-05 43.9 4.8 32 45-76 1-33 (174)
424 PRK08644 thiamine biosynthesis 89.9 0.51 1.1E-05 45.3 5.0 35 42-76 27-62 (212)
425 PF10727 Rossmann-like: Rossma 89.9 0.2 4.3E-06 43.8 2.0 35 41-75 8-42 (127)
426 PRK04308 murD UDP-N-acetylmura 89.8 0.45 9.8E-06 51.2 5.2 34 44-77 6-39 (445)
427 KOG2495 NADH-dehydrogenase (ub 89.8 1.6 3.5E-05 45.5 8.7 48 190-238 124-171 (491)
428 COG1063 Tdh Threonine dehydrog 89.6 0.41 8.9E-06 49.8 4.5 33 45-77 171-204 (350)
429 TIGR03315 Se_ygfK putative sel 89.6 2.8 6E-05 49.4 11.6 34 43-76 666-701 (1012)
430 PRK14618 NAD(P)H-dependent gly 89.5 0.43 9.3E-06 49.1 4.5 33 45-77 6-38 (328)
431 PRK14619 NAD(P)H-dependent gly 89.5 0.5 1.1E-05 48.1 5.0 35 43-77 4-38 (308)
432 TIGR03026 NDP-sugDHase nucleot 89.4 0.32 6.9E-06 51.8 3.6 34 45-78 2-35 (411)
433 PF01593 Amino_oxidase: Flavin 89.4 0.3 6.5E-06 51.5 3.4 26 53-78 1-26 (450)
434 TIGR00936 ahcY adenosylhomocys 89.3 0.43 9.4E-06 50.2 4.4 35 43-77 195-229 (406)
435 PRK06223 malate dehydrogenase; 89.3 0.47 1E-05 48.3 4.6 34 44-77 3-37 (307)
436 TIGR00561 pntA NAD(P) transhyd 89.3 0.37 8.1E-06 52.1 4.0 35 43-77 164-198 (511)
437 cd01483 E1_enzyme_family Super 89.3 0.6 1.3E-05 41.6 4.8 33 45-77 1-34 (143)
438 KOG0405 Pyridine nucleotide-di 89.2 0.54 1.2E-05 47.5 4.6 35 41-75 18-52 (478)
439 TIGR02355 moeB molybdopterin s 89.1 0.6 1.3E-05 45.7 5.0 35 42-76 23-58 (240)
440 PRK03369 murD UDP-N-acetylmura 88.9 0.44 9.6E-06 51.9 4.3 32 44-75 13-44 (488)
441 PRK02472 murD UDP-N-acetylmura 88.7 0.57 1.2E-05 50.4 5.0 34 44-77 6-39 (447)
442 PRK07417 arogenate dehydrogena 88.7 0.41 9E-06 48.0 3.6 32 45-76 2-33 (279)
443 PLN02545 3-hydroxybutyryl-CoA 88.6 0.54 1.2E-05 47.6 4.5 34 45-78 6-39 (295)
444 PRK12549 shikimate 5-dehydroge 88.5 0.57 1.2E-05 47.1 4.5 33 44-76 128-161 (284)
445 PRK10669 putative cation:proto 88.4 0.43 9.3E-06 53.0 3.9 35 43-77 417-451 (558)
446 PRK00094 gpsA NAD(P)H-dependen 88.4 0.49 1.1E-05 48.4 4.1 33 45-77 3-35 (325)
447 cd05291 HicDH_like L-2-hydroxy 88.3 0.57 1.2E-05 47.7 4.4 34 45-78 2-37 (306)
448 PRK08306 dipicolinate synthase 88.3 0.51 1.1E-05 47.8 4.0 35 43-77 152-186 (296)
449 COG5044 MRS6 RAB proteins gera 88.3 0.73 1.6E-05 47.0 4.9 37 43-79 6-42 (434)
450 PRK05690 molybdopterin biosynt 88.1 0.74 1.6E-05 45.3 4.9 35 42-76 31-66 (245)
451 PRK05476 S-adenosyl-L-homocyst 88.1 0.61 1.3E-05 49.5 4.5 34 44-77 213-246 (425)
452 cd05293 LDH_1 A subgroup of L- 88.1 0.7 1.5E-05 47.1 4.9 35 43-77 3-39 (312)
453 TIGR03736 PRTRC_ThiF PRTRC sys 88.1 0.7 1.5E-05 45.2 4.6 36 41-76 9-55 (244)
454 PRK09496 trkA potassium transp 87.9 0.54 1.2E-05 50.6 4.2 33 45-77 2-34 (453)
455 KOG1336 Monodehydroascorbate/f 87.7 2.5 5.5E-05 44.7 8.6 37 190-235 143-179 (478)
456 cd00755 YgdL_like Family of ac 87.7 0.82 1.8E-05 44.4 4.8 34 43-76 11-45 (231)
457 cd00757 ThiF_MoeB_HesA_family 87.5 0.9 2E-05 44.1 5.1 35 42-76 20-55 (228)
458 cd05311 NAD_bind_2_malic_enz N 87.4 0.78 1.7E-05 44.5 4.6 34 43-76 25-61 (226)
459 PRK08328 hypothetical protein; 87.4 0.91 2E-05 44.2 5.0 34 43-76 27-61 (231)
460 cd01339 LDH-like_MDH L-lactate 87.3 0.65 1.4E-05 47.1 4.1 32 46-77 1-33 (300)
461 PRK01710 murD UDP-N-acetylmura 87.3 0.69 1.5E-05 50.0 4.5 34 44-77 15-48 (458)
462 PRK08268 3-hydroxy-acyl-CoA de 87.3 0.66 1.4E-05 50.7 4.4 35 44-78 8-42 (507)
463 PRK08223 hypothetical protein; 87.1 0.9 2E-05 45.4 4.8 35 42-76 26-61 (287)
464 TIGR01915 npdG NADPH-dependent 87.1 0.69 1.5E-05 44.6 3.9 32 45-76 2-34 (219)
465 PRK15057 UDP-glucose 6-dehydro 87.0 0.65 1.4E-05 49.0 4.0 33 45-78 2-34 (388)
466 COG0492 TrxB Thioredoxin reduc 86.9 6.7 0.00014 39.9 11.1 36 44-79 144-179 (305)
467 PRK07531 bifunctional 3-hydrox 86.9 0.67 1.4E-05 50.6 4.2 34 45-78 6-39 (495)
468 PRK12775 putative trifunctiona 86.8 4.9 0.00011 47.9 11.6 32 44-75 572-604 (1006)
469 PLN02353 probable UDP-glucose 86.8 0.68 1.5E-05 50.0 4.1 34 45-78 3-38 (473)
470 PLN02695 GDP-D-mannose-3',5'-e 86.7 1.1 2.4E-05 47.0 5.5 40 37-76 15-55 (370)
471 PRK05600 thiamine biosynthesis 86.6 0.93 2E-05 47.4 4.8 35 42-76 40-75 (370)
472 COG0771 MurD UDP-N-acetylmuram 86.4 0.84 1.8E-05 48.6 4.4 36 43-78 7-42 (448)
473 cd01078 NAD_bind_H4MPT_DH NADP 86.2 1 2.3E-05 42.3 4.6 32 44-75 29-61 (194)
474 TIGR02279 PaaC-3OHAcCoADH 3-hy 85.9 0.69 1.5E-05 50.5 3.6 34 45-78 7-40 (503)
475 cd05290 LDH_3 A subgroup of L- 85.9 1 2.3E-05 45.7 4.7 34 45-78 1-36 (307)
476 cd01485 E1-1_like Ubiquitin ac 85.9 1.2 2.5E-05 42.3 4.8 34 43-76 19-53 (198)
477 PTZ00117 malate dehydrogenase; 85.9 1.1 2.3E-05 46.0 4.8 36 43-78 5-41 (319)
478 COG1893 ApbA Ketopantoate redu 85.8 0.84 1.8E-05 46.5 3.9 32 45-76 2-33 (307)
479 PRK03659 glutathione-regulated 85.8 0.81 1.7E-05 51.3 4.2 35 43-77 400-434 (601)
480 PRK07502 cyclohexadienyl dehyd 85.7 0.86 1.9E-05 46.4 4.0 33 44-76 7-41 (307)
481 PLN02494 adenosylhomocysteinas 85.7 1 2.2E-05 48.1 4.6 34 44-77 255-288 (477)
482 PF00670 AdoHcyase_NAD: S-aden 85.5 0.92 2E-05 41.2 3.6 33 44-76 24-56 (162)
483 cd01492 Aos1_SUMO Ubiquitin ac 85.4 1.3 2.8E-05 41.9 4.8 35 42-76 20-55 (197)
484 PRK04690 murD UDP-N-acetylmura 85.2 0.96 2.1E-05 49.1 4.3 34 44-77 9-42 (468)
485 TIGR02853 spore_dpaA dipicolin 85.1 0.95 2.1E-05 45.6 3.9 33 44-76 152-184 (287)
486 COG1748 LYS9 Saccharopine dehy 85.0 0.96 2.1E-05 47.2 3.9 34 44-77 2-36 (389)
487 PRK11730 fadB multifunctional 84.9 0.77 1.7E-05 52.5 3.5 34 45-78 315-348 (715)
488 KOG2755 Oxidoreductase [Genera 84.8 0.71 1.5E-05 44.9 2.7 31 46-76 2-34 (334)
489 TIGR02437 FadB fatty oxidation 84.6 0.82 1.8E-05 52.2 3.6 34 45-78 315-348 (714)
490 PRK09496 trkA potassium transp 84.5 1 2.2E-05 48.5 4.1 34 44-77 232-265 (453)
491 PRK12548 shikimate 5-dehydroge 84.5 1.4 3E-05 44.5 4.8 33 44-76 127-160 (289)
492 PLN02976 amine oxidase 84.5 1.1E+02 0.0025 37.8 22.4 38 358-398 1150-1187(1713)
493 PRK03562 glutathione-regulated 84.4 1 2.2E-05 50.7 4.1 35 43-77 400-434 (621)
494 PRK08762 molybdopterin biosynt 84.3 1.3 2.8E-05 46.5 4.7 35 42-76 134-169 (376)
495 COG3486 IucD Lysine/ornithine 84.2 17 0.00037 38.0 12.4 49 187-237 291-340 (436)
496 PRK00141 murD UDP-N-acetylmura 84.2 1.2 2.5E-05 48.5 4.4 31 45-75 17-47 (473)
497 TIGR01505 tartro_sem_red 2-hyd 84.1 1.1 2.5E-05 45.1 4.1 33 45-77 1-33 (291)
498 PRK11199 tyrA bifunctional cho 84.1 1.4 3.1E-05 46.2 4.8 32 44-75 99-131 (374)
499 PRK05562 precorrin-2 dehydroge 84.1 1.5 3.2E-05 42.3 4.5 33 43-75 25-57 (223)
500 COG1179 Dinucleotide-utilizing 84.0 1.3 2.7E-05 42.7 3.9 35 43-77 30-65 (263)
No 1
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=5.4e-53 Score=464.14 Aligned_cols=365 Identities=32% Similarity=0.514 Sum_probs=289.1
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccce
Q 008258 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF 118 (572)
Q Consensus 39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~ 118 (572)
|++..+||+||||||+||++|+.|+++|++|+||||++.+...++++.+++++|++|+++ |+.+++.+.+.+.......
T Consensus 3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~l-Gl~~~l~~~g~~~~~~~~~ 81 (545)
T PRK06126 3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRL-GIADEVRSAGLPVDYPTDI 81 (545)
T ss_pred CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhc-ChHHHHHhhcCCccccCCc
Confidence 446678999999999999999999999999999999999999999999999999999999 9999999887765444444
Q ss_pred eeeeCCCCCeeeeecCCCccc-cc-------cccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccce
Q 008258 119 IYCTSVTGPILGSVDHMQPQD-FE-------KVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGRE 190 (572)
Q Consensus 119 ~~~~~~~G~~~~~~~~~~~~~-~~-------~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 190 (572)
.++.+..|+.+.+++...... .. ...+|.....++|..|+++|++.+.+.+ +++
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~------------------~v~ 143 (545)
T PRK06126 82 AYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQP------------------GVT 143 (545)
T ss_pred eEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCC------------------Cce
Confidence 555666787776654321110 00 0123445577999999999999987642 249
Q ss_pred EEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCcccccc
Q 008258 191 ILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYL 270 (572)
Q Consensus 191 i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~ 270 (572)
+++++++++++++++++++++...++| +++++++|+||||||++|.||+++|+.+.|...++..+.+.+...++....
T Consensus 144 i~~~~~v~~i~~~~~~v~v~~~~~~~g--~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~ 221 (545)
T PRK06126 144 LRYGHRLTDFEQDADGVTATVEDLDGG--ESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALV 221 (545)
T ss_pred EEeccEEEEEEECCCeEEEEEEECCCC--cEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHh
Confidence 999999999999999998888743344 345799999999999999999999999998887777777766654443332
Q ss_pred ccCCCceEEEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCcccccee
Q 008258 271 LNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEV 350 (572)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~ 350 (572)
...+...+++++|+..+++...+. ...|.+. .+.++. ....++++.+.+.+++.++. +...++....+|.+...+
T Consensus 222 -~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~w~~~~~~ 296 (545)
T PRK06126 222 -GHDPAWMYWLFNPDRRGVLVAIDG-RDEWLFH-QLRGGE-DEFTIDDVDARAFVRRGVGE-DIDYEVLSVVPWTGRRLV 296 (545)
T ss_pred -cCCCceEEEEECCCccEEEEEECC-CCeEEEE-EecCCC-CCCCCCHHHHHHHHHHhcCC-CCCeEEEeecccchhhee
Confidence 234556677778876666655443 3456554 222222 22356777888899998884 446677788899988999
Q ss_pred cccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHH
Q 008258 351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA 430 (572)
Q Consensus 351 a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~ 430 (572)
+++|+ +|||+|+|||||.|+|++|||||+||+||+||||+|+.++++.+.+.+|++|++||+|+++.+++.+..+...
T Consensus 297 a~~~~--~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~ 374 (545)
T PRK06126 297 ADSYR--RGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPALLDSYEAERRPIAARNTDYARRNADA 374 (545)
T ss_pred hhhhc--cCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCCCcHHHHhhhHHHhhHHHHHHHHHHHHHHHH
Confidence 99997 6999999999999999999999999999999999999999888889999999999999999999998877654
Q ss_pred h
Q 008258 431 A 431 (572)
Q Consensus 431 ~ 431 (572)
+
T Consensus 375 ~ 375 (545)
T PRK06126 375 L 375 (545)
T ss_pred h
Confidence 3
No 2
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=3.2e-48 Score=428.75 Aligned_cols=444 Identities=23% Similarity=0.270 Sum_probs=289.3
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCccccccee
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~-Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~ 119 (572)
..++||+||||||+||++|+.|+++ |++|+||||++.+...++|.+|+++++|+|+++ |+++++.+.+.+..... .
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~l-Gl~d~l~~~g~~~~~~~--~ 106 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAF-GFAERILKEAYWINETA--F 106 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhc-cchHHHHhhcccccceE--E
Confidence 4478999999999999999999995 999999999999888899999999999999999 99999988766543221 1
Q ss_pred eeeCCC-CCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEE
Q 008258 120 YCTSVT-GPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV 198 (572)
Q Consensus 120 ~~~~~~-G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~ 198 (572)
|..+.. +..+.+..... +.....++.....++|..++++|++.+.+.|. +++++++++++
T Consensus 107 ~~~~~~~~~~i~r~~~~~--~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~-----------------~v~v~~g~~v~ 167 (634)
T PRK08294 107 WKPDPADPSTIVRTGRVQ--DTEDGLSEFPHVIVNQARVHDYFLDVMRNSPT-----------------RLEPDYGREFV 167 (634)
T ss_pred EcCCCccccceecccccc--ccCCCCCCCccEeeCHHHHHHHHHHHHHhcCC-----------------ceEEEeCcEEE
Confidence 211111 11121111110 11111233445678999999999999987663 23788999999
Q ss_pred EEeeeC---CeEEEEEEeccC-CceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEec-CccccccccC
Q 008258 199 SVSATD---QCINVIASFLKE-GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLS-KDLGDYLLNE 273 (572)
Q Consensus 199 ~v~~~~---~~v~v~~~~~~~-g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~ 273 (572)
++++++ ++|+|++...++ .++++++++|||||||||++|.||+++|+++.|......+..+.... .++. .
T Consensus 168 ~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p-----~ 242 (634)
T PRK08294 168 DLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFP-----D 242 (634)
T ss_pred EEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCC-----C
Confidence 998765 358888874321 02234589999999999999999999999999877665444333221 1111 1
Q ss_pred CCceEEEEE-ecCceEEEEEecCCCCe-E--EEEeecCCCC--CCCCCCCHHHHHHHHHHHhCCCCCce-eEEEecCccc
Q 008258 274 RPGMLFFIF-NTEAIGVLVAHDLKEGE-F--ILQVPFYPPQ--QNLEDFSPEICEKLIFKLVGWELSDI-DVIDIKPWVM 346 (572)
Q Consensus 274 ~~~~~~~~~-~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~-~i~~~~~w~~ 346 (572)
. .....+. .+....++++. ..+. + ++.++..++. ......+.+.+.+.++++++.....+ ++.....|.+
T Consensus 243 ~-~~~~~~~~~~~g~~~~~P~--~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~~~v~w~s~y~i 319 (634)
T PRK08294 243 I-RLKCAIQSASEGSILLIPR--EGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDVKEVAWWSVYEV 319 (634)
T ss_pred c-ceEEEEecCCCceEEEEEC--CCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCceeEEeEEecccc
Confidence 0 1111122 23333333333 2232 2 2222111111 12245678888888888776422222 2233334566
Q ss_pred cceecccccc--------cCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHH
Q 008258 347 HAEVAEKFLC--------CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418 (572)
Q Consensus 347 ~~~~a~~~~~--------~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~ 418 (572)
.++++++|.. ..|||||+|||||.|+|.+|||||+||+||+||+|||+.++++.+.+++|++|+.||+|+++
T Consensus 320 ~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERrp~a~ 399 (634)
T PRK08294 320 GQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQAIAQ 399 (634)
T ss_pred cceehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 7888888831 25999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhcccc--------------------cccCCCccchhhhH------HHh--hcccCCCCcHHHH-----
Q 008258 419 FNTALSVQNFRAAMEVP--------------------SALGLDPTIANSVH------QLI--NRVAGSVLPSVLQ----- 465 (572)
Q Consensus 419 ~~~~~s~~~~~~~~~~~--------------------~~~g~~~~~~~~~~------~~~--~~~~~~~~~~~~~----- 465 (572)
.+++.+....+.+..-+ ...|+...|..... +.+ .-..|.++|+...
T Consensus 400 ~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~sG~~~~Y~~s~l~~~~~~~~~~~~~~~G~r~~~~~v~~~~d 479 (634)
T PRK08294 400 ELIDFDREWSTMMAAPPKEGGGVDPAELQDYFVKHGRFTAGTATHYAPSLLTGEATHQDLATGFPIGKRFHSAPVIRLAD 479 (634)
T ss_pred HHHHHHHHHHHHhccCCccccccCHHHHHHHHHHhhhhhcccCcccCCccccCCCCchhhccCCCCceeCCCCceeeccC
Confidence 98888765554442211 11122222211100 000 0123444444221
Q ss_pred ---HHHHhhhhhhhhhHhhhhhccCCCcchHHHHHHHHHHHH-cCCccccccC
Q 008258 466 ---KALLEGIFKVGRAQLSESLLNESNPLGSSRLAKLRHIFE-EGKSLQLQFP 514 (572)
Q Consensus 466 ---~~~~~~~~~~g~~~~~~~~~~~~~p~~~~r~~~~~~~~~-~~~~~~~~f~ 514 (572)
..+.+.+.+.|++.+..|..+...+....+.+++.+.|+ ...++...|+
T Consensus 480 ~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 532 (634)
T PRK08294 480 AKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFLAESPDSPLRRFT 532 (634)
T ss_pred CCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHHhhCccchHhhcC
Confidence 233445666788777655544555677788999999994 3344444554
No 3
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-47 Score=417.48 Aligned_cols=346 Identities=28% Similarity=0.410 Sum_probs=253.3
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~ 122 (572)
++||+||||||+||++|+.|+++|++|+||||++.+...+++..++++++++|+++ |+.+++.+.+.+...... +
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~l-Gl~~~l~~~~~~~~~~~~--~-- 77 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDL-GVLDRVVAAGGLYPPMRI--Y-- 77 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHc-CcHHHHHhcCccccceeE--E--
Confidence 58999999999999999999999999999999999988899999999999999999 999999887755433221 1
Q ss_pred CCCCCeeeeecCCCccccccccCCcc-ccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258 123 SVTGPILGSVDHMQPQDFEKVVSPVS-VAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (572)
Q Consensus 123 ~~~G~~~~~~~~~~~~~~~~~~sp~~-~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~ 201 (572)
...+. +.......... .....++. ...++|..|+++|.+.+.+.|+ ++++++++++++
T Consensus 78 ~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv-------------------~i~~~~~v~~i~ 136 (502)
T PRK06184 78 RDDGS-VAESDMFAHLE-PTPDEPYPLPLMVPQWRTERILRERLAELGH-------------------RVEFGCELVGFE 136 (502)
T ss_pred eCCce-EEEeecccccc-CCCCCCCCcceecCHHHHHHHHHHHHHHCCC-------------------EEEeCcEEEEEE
Confidence 11222 22111110000 00011221 3568999999999999988776 899999999999
Q ss_pred eeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcc-eEEEEEEecCccccccccCCCceEEE
Q 008258 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQ-KLVSVHFLSKDLGDYLLNERPGMLFF 280 (572)
Q Consensus 202 ~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (572)
+++++|++++...++ .++++||+||||||++|.||+++|+.+.|..... .++........ ..+...+.
T Consensus 137 ~~~~~v~v~~~~~~~----~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~ 205 (502)
T PRK06184 137 QDADGVTARVAGPAG----EETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTG-------LDRDAWHQ 205 (502)
T ss_pred EcCCcEEEEEEeCCC----eEEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeec-------CCCcceEE
Confidence 999999888763222 2379999999999999999999999998877654 44333322111 11122222
Q ss_pred EEecC-ceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCcee-EEEecCccccceecccccccC
Q 008258 281 IFNTE-AIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDID-VIDIKPWVMHAEVAEKFLCCY 358 (572)
Q Consensus 281 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-i~~~~~w~~~~~~a~~~~~~~ 358 (572)
+..+. ....+++.+ ....|.+.++... ......+++.+.++++...+.....++ +.....|.+..+++++|. +
T Consensus 206 ~~~~~~~~~~~~p~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~ 280 (502)
T PRK06184 206 WPDGDMGMIALCPLP-GTDLFQIQAPLPP--GGEPDLSADGLTALLAERTGRTDIRLHSVTWASAFRMNARLADRYR--V 280 (502)
T ss_pred ccCCCCcEEEEEEcc-CCCeEEEEEEcCC--CccCCCCHHHHHHHHHHhcCCCCcceeeeeeeeccccceeEhhhhc--C
Confidence 22332 222223322 1234555444322 223456788888889888775443332 333556778888899997 6
Q ss_pred CcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (572)
Q Consensus 359 grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~ 431 (572)
|||||+|||||.|+|++|||||+||+||+||+|||+.++++ +.+.+|++|++||+|+++.+++.+...++..
T Consensus 281 gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g-~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~ 352 (502)
T PRK06184 281 GRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG-APEALLDTYEEERRPVAAAVLGLSTELLDAI 352 (502)
T ss_pred CcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 7889999999999999999998888766543
No 4
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=6.3e-47 Score=407.32 Aligned_cols=342 Identities=24% Similarity=0.336 Sum_probs=247.3
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCccccccee
Q 008258 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (572)
Q Consensus 40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~ 119 (572)
.+..+||+||||||+||++|+.|+++|++|+||||.+.+...+++..++++++|+|+.+ |+++++...+.+.... ..
T Consensus 2 ~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~l-Gl~~~l~~~~~~~~~~--~~ 78 (487)
T PRK07190 2 STQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELV-DLFDELYPLGKPCNTS--SV 78 (487)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhc-ChHHHHHhhCccceeE--EE
Confidence 35568999999999999999999999999999999998888899999999999999999 9999998766554322 11
Q ss_pred eeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEE
Q 008258 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (572)
Q Consensus 120 ~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~ 199 (572)
| ..|..+........ .... ........++|..++++|.+++.+.|+ +++++++|++
T Consensus 79 ~---~~g~~i~~~~~~~~-~~~~-~~~~~~~~~~q~~le~~L~~~~~~~Gv-------------------~v~~~~~v~~ 134 (487)
T PRK07190 79 W---ANGKFISRQSSWWE-ELEG-CLHKHFLMLGQSYVEKLLDDKLKEAGA-------------------AVKRNTSVVN 134 (487)
T ss_pred e---cCCceEeeccccCc-cCCc-CCCCceEecCHHHHHHHHHHHHHHCCC-------------------EEEeCCEEEE
Confidence 2 12333221111000 0000 001123568999999999999988887 8999999999
Q ss_pred EeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEec-CccccccccCCCceE
Q 008258 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLS-KDLGDYLLNERPGML 278 (572)
Q Consensus 200 v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~ 278 (572)
++++++++++++. +|. +++|+|||||||++|.||+++|+++.|......+..+.... .++ ...+...
T Consensus 135 l~~~~~~v~v~~~---~g~----~v~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~-----~~~~~~~ 202 (487)
T PRK07190 135 IELNQAGCLTTLS---NGE----RIQSRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDF-----PKVPEII 202 (487)
T ss_pred EEEcCCeeEEEEC---CCc----EEEeCEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCC-----CCCcceE
Confidence 9999999887764 442 78999999999999999999999998866443333332211 111 1111222
Q ss_pred EEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhC-CCCCceeEEEecCccccceeccccccc
Q 008258 279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVG-WELSDIDVIDIKPWVMHAEVAEKFLCC 357 (572)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~~~~w~~~~~~a~~~~~~ 357 (572)
. +..+....++++.. .+...+.+.. ...+++.+.+.+.+++.+. ......++...+.|++..+++++|+.
T Consensus 203 ~-~~~~~g~~~~~p~~--~~~~r~~~~~-----~~~~~t~~~~~~~l~~~~~~~~~~~~~~~w~s~~~~~~r~a~~~r~- 273 (487)
T PRK07190 203 V-FQAETSDVAWIPRE--GEIDRFYVRM-----DTKDFTLEQAIAKINHAMQPHRLGFKEIVWFSQFSVKESVAEHFFI- 273 (487)
T ss_pred E-EEcCCCCEEEEECC--CCEEEEEEEc-----CCCCCCHHHHHHHHHHhcCCCCCceEEEEEEEEeeeCcEehhhcCc-
Confidence 2 22333333333332 2222222211 1245677778887877553 32222234455678889999999962
Q ss_pred CCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR 429 (572)
Q Consensus 358 ~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~ 429 (572)
+|||||+|||||.|+|.+|||||+||+||+||+|||+.+++|.+.+.+|++|+.||+|+++.+...+....+
T Consensus 274 ~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~a~~~lLdtY~~eR~p~a~~vl~~t~~~~~ 345 (487)
T PRK07190 274 QDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHGASPELLQSYEAERKPVAQGVIETSGELVR 345 (487)
T ss_pred CCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 599999999999999999999999999999999999999999999999999999999999998887765544
No 5
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-46 Score=406.65 Aligned_cols=337 Identities=26% Similarity=0.385 Sum_probs=246.4
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~ 122 (572)
++||+||||||+||++|+.|+++|++|+||||++.+...++++.++++++++|+++ |+.+++.+.+.+...+. +.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~l-Gl~~~l~~~~~~~~~~~---~~- 76 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMR-GLLERFLEKGRKLPSGH---FA- 76 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhc-CcHHHHHhhcccccceE---Ee-
Confidence 47999999999999999999999999999999999888899999999999999999 99999988775553222 11
Q ss_pred CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (572)
Q Consensus 123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~ 202 (572)
...+. .+. . .... ..+. ...++|..++++|.+.+.+.|+ +++++++++++++
T Consensus 77 ~~~~~----~~~-~--~~~~-~~~~-~~~i~q~~le~~L~~~~~~~gv-------------------~v~~~~~v~~i~~ 128 (493)
T PRK08244 77 GLDTR----LDF-S--ALDT-SSNY-TLFLPQAETEKVLEEHARSLGV-------------------EIFRGAEVLAVRQ 128 (493)
T ss_pred ccccc----CCc-c--cCCC-CCCc-EEEecHHHHHHHHHHHHHHcCC-------------------eEEeCCEEEEEEE
Confidence 11111 110 0 0000 1121 3568999999999999988776 8999999999999
Q ss_pred eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEEE
Q 008258 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282 (572)
Q Consensus 203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 282 (572)
+++++++++... +| +++++||+||||||++|.||+++|+++.|.......+...+... ...+...+.++
T Consensus 129 ~~~~v~v~~~~~-~g---~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 197 (493)
T PRK08244 129 DGDGVEVVVRGP-DG---LRTLTSSYVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLK-------DPPPSSVLSLC 197 (493)
T ss_pred cCCeEEEEEEeC-Cc---cEEEEeCEEEECCCCChHHHHhcCCCccCCCcceEEEEEEEEec-------CCCCcceeEEE
Confidence 999988887632 23 24789999999999999999999998887664443332222211 11122233445
Q ss_pred ecCceEEEEEecCCCCeEEEEeecC--CCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceecccccccCCc
Q 008258 283 NTEAIGVLVAHDLKEGEFILQVPFY--PPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQ 360 (572)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~~gr 360 (572)
.++...++++.+ .+.+.+.+... .+.......+.+.+.+.+.+..+......+......|....+++++|+ +||
T Consensus 198 ~~~g~~~~~P~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~gR 273 (493)
T PRK08244 198 TREGGVMIVPLS--GGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRICGTDFGLNDPVWMSRFGNATRQAERYR--SGR 273 (493)
T ss_pred eCCceEEEEECC--CCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHhhCCCCCcCCeeEEEecccceeeHhhhc--cCc
Confidence 666544444443 34444333211 111122345677778888887765432222233345667778889997 699
Q ss_pred EEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHH
Q 008258 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN 427 (572)
Q Consensus 361 V~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~ 427 (572)
|+|+|||||.|+|++|||||+||+||+||+|||+.++++.+.+.+|++|++||+|+++.++..+...
T Consensus 274 v~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~~~~~~~~~~~~~~ 340 (493)
T PRK08244 274 IFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDWLLDSYHAERHPVGTALLRNTEVQ 340 (493)
T ss_pred EEEeecceeccCCccccccccchhhHHHHHHHHHHHHcCCCCchhhhhhHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999999999999988889999999999999999887765443
No 6
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=7.2e-46 Score=407.45 Aligned_cols=345 Identities=23% Similarity=0.389 Sum_probs=249.7
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeee
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~ 121 (572)
.++||+||||||+||++|+.|+++|++|+||||++.+...+++..++++++++|+++ |+.+++.+.+.+...+.. +.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~l-Gl~~~l~~~~~~~~~~~~--~~ 98 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRL-GCGERMVDKGVSWNVGKV--FL 98 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHc-CCcHHHHhhCceeeceeE--Ee
Confidence 568999999999999999999999999999999998888899999999999999999 999999887654322211 11
Q ss_pred eCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258 122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (572)
Q Consensus 122 ~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~ 201 (572)
. +..+...+...... ........++|..|+++|.+.+.+.+ ++++++++++++++
T Consensus 99 ~---~~~~~~~~~~~~~~----~~~~~~~~~~q~~le~~L~~~~~~~~------------------~v~v~~~~~v~~i~ 153 (547)
T PRK08132 99 R---DEEVYRFDLLPEPG----HRRPAFINLQQYYVEGYLVERAQALP------------------NIDLRWKNKVTGLE 153 (547)
T ss_pred C---CCeEEEecCCCCCC----CCCCceEecCHHHHHHHHHHHHHhCC------------------CcEEEeCCEEEEEE
Confidence 1 12222222111000 00112456899999999999987753 24899999999999
Q ss_pred eeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEE
Q 008258 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI 281 (572)
Q Consensus 202 ~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (572)
++++++++++... ++ +++++||+||||||++|.||+.+|+++.|......++.+...... ..+...+++
T Consensus 154 ~~~~~v~v~~~~~-~g---~~~i~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~-------~~~~~~~~~ 222 (547)
T PRK08132 154 QHDDGVTLTVETP-DG---PYTLEADWVIACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKA-------DFPTERWFW 222 (547)
T ss_pred EcCCEEEEEEECC-CC---cEEEEeCEEEECCCCCcHHHHHcCCCCCCccccceEEEEEEEecC-------CCCCeeeEE
Confidence 9999988887622 22 246899999999999999999999998887654444443322110 011111222
Q ss_pred Ee----cCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceeccccccc
Q 008258 282 FN----TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCC 357 (572)
Q Consensus 282 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~ 357 (572)
+. ++.. +++. ....+.|.+..............+++.+.+.++++++.. .++++.....|.++.+++++|+
T Consensus 223 ~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~-- 297 (547)
T PRK08132 223 FDPPFHPGQS-VLLH-RQPDNVWRIDFQLGWDADPEAEKKPENVIPRVRALLGED-VPFELEWVSVYTFQCRRMDRFR-- 297 (547)
T ss_pred EeccCCCCcE-EEEE-eCCCCeEEEEEecCCCCCchhhcCHHHHHHHHHHHcCCC-CCeeEEEEEeeeeeeeeecccc--
Confidence 22 2222 2222 222344544332211111112345667778888888743 4455666667888889999997
Q ss_pred CCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHH
Q 008258 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA 430 (572)
Q Consensus 358 ~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~ 430 (572)
+|||+|+|||||.|+|++|||||+||+||+||+|||+.+++|.+.+.+|++|++||+|+++.+++.+......
T Consensus 298 ~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~ 370 (547)
T PRK08132 298 HGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYASEREFAADENIRNSTRSTDF 370 (547)
T ss_pred cccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6999999999999999999999999999999999999999999899999999999999999988877765543
No 7
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=5.6e-46 Score=407.29 Aligned_cols=349 Identities=28% Similarity=0.416 Sum_probs=257.1
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (572)
+..+||+||||||+||++|+.|+++|++|+||||++.+...+++..++++++++|+++ |+.+++.+.+.+...+ .+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~---~~ 83 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAI-GLADEVLPHTTPNHGM---RF 83 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHc-CChhHHHhhcccCCce---EE
Confidence 4458999999999999999999999999999999999888899999999999999999 9999998876554322 22
Q ss_pred eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhc-CceeeccCCcccccccccccceEEeccEEEE
Q 008258 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (572)
Q Consensus 121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~ 199 (572)
. +..|+.+..++......+ .......++|..++++|.+.+.+. |+ ++++++++++
T Consensus 84 ~-~~~g~~~~~~~~~~~~~~----g~~~~~~~~q~~le~~L~~~~~~~~gv-------------------~v~~g~~v~~ 139 (538)
T PRK06183 84 L-DAKGRCLAEIARPSTGEF----GWPRRNAFHQPLLEAVLRAGLARFPHV-------------------RVRFGHEVTA 139 (538)
T ss_pred E-cCCCCEEEEEcCCCCCCC----CCChhccCChHHHHHHHHHHHHhCCCc-------------------EEEcCCEEEE
Confidence 2 245655544432110010 011235688999999999998775 44 9999999999
Q ss_pred EeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEE
Q 008258 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF 279 (572)
Q Consensus 200 v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (572)
+++++++|++++... +| ++++++|||||||||++|.||+.+|+.+.+......++.+.+..... .......+
T Consensus 140 i~~~~~~v~v~~~~~-~G--~~~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 211 (538)
T PRK06183 140 LTQDDDGVTVTLTDA-DG--QRETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIAND-----PLGGPHTY 211 (538)
T ss_pred EEEcCCeEEEEEEcC-CC--CEEEEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccC-----ccCCCceE
Confidence 999999998888622 33 34589999999999999999999999888776665555444321111 11122234
Q ss_pred EEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCC-CHHHHHHHHHHHhCCCCCceeEEEecCccccceecccccccC
Q 008258 280 FIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDF-SPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCY 358 (572)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~~ 358 (572)
++++|+...++++.+ .+.+.+.+...+.. ..+++ +++.+.+++..+. ..+...++.....|.+...++++|+ +
T Consensus 212 ~~~~~~~~~~~~p~~--~~~~r~~~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~--~ 285 (538)
T PRK06183 212 QYCDPARPYTSVRLP--HGRRRWEFMLLPGE-TEEQLASPENVWRLLAPWG-PTPDDAELIRHAVYTFHARVADRWR--S 285 (538)
T ss_pred EEECCCCCEEEEEcC--CCeEEEEEEeCCCC-ChhhcCCHHHHHHHHHhhC-CCCcceEEEEEEeeeEccEEhhhhc--c
Confidence 455666544444433 23333332222222 22223 4566677776552 2334456666667778888899997 6
Q ss_pred CcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (572)
Q Consensus 359 grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~ 431 (572)
|||+|+|||||.|+|++|||||+||+||+||+|||+.++++.+.+.+|++|++||+|++..+++.+....+.+
T Consensus 286 gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~ 358 (538)
T PRK06183 286 GRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRPHARAMIDLAVRLGRVI 358 (538)
T ss_pred CCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999999999999999988888899999999999999999998887655443
No 8
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=6.6e-45 Score=392.12 Aligned_cols=331 Identities=25% Similarity=0.359 Sum_probs=240.3
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeee
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~-~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~ 121 (572)
++||+||||||+||++|+.|+++|++|+||||.+.+. ..+++..++++++++|+++ |+++++.+.+.+.... .+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~l-Gl~~~l~~~~~~~~~~-~~--- 77 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQR-GIADRFLAQGQVAQVT-GF--- 77 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHc-CcHHHHHhcCCccccc-ee---
Confidence 4899999999999999999999999999999998765 4568999999999999999 9999998765443210 00
Q ss_pred eCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258 122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (572)
Q Consensus 122 ~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~ 201 (572)
.. ...+.. ++.. ..+. ...++|..++++|.+.+.+.|+ ++++++++++++
T Consensus 78 ---~~---~~~~~~---~~~~-~~~~-~~~i~q~~le~~L~~~l~~~gv-------------------~i~~~~~v~~v~ 127 (488)
T PRK06834 78 ---AA---TRLDIS---DFPT-RHNY-GLALWQNHIERILAEWVGELGV-------------------PIYRGREVTGFA 127 (488)
T ss_pred ---ee---Eecccc---cCCC-CCCc-cccccHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEEE
Confidence 00 011100 0000 0011 2467899999999999988876 899999999999
Q ss_pred eeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEE
Q 008258 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI 281 (572)
Q Consensus 202 ~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (572)
++++++++++. +|. +++|||||+|||++|.||+++|+.+.|....+.++...+...+. +. ....
T Consensus 128 ~~~~~v~v~~~---~g~----~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~--------~~-~~~~ 191 (488)
T PRK06834 128 QDDTGVDVELS---DGR----TLRAQYLVGCDGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEE--------PE-WGVH 191 (488)
T ss_pred EcCCeEEEEEC---CCC----EEEeCEEEEecCCCCCcHhhcCCCCCCCCcceEEEEEEEEecCC--------CC-ccee
Confidence 99999888764 443 68999999999999999999999999887655555444332110 10 1111
Q ss_pred EecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceecccccccCCcE
Q 008258 282 FNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQI 361 (572)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~~grV 361 (572)
+.+.....+.... ..+.+.+.+...++ ......+.+.+.+.+++.++.............|....+++++|+ +|||
T Consensus 192 ~~~~g~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~r~a~~~~--~gRV 267 (488)
T PRK06834 192 RDALGIHAFGRLE-DEGPVRVMVTEKQV-GATGEPTLDDLREALIAVYGTDYGIHSPTWISRFTDMARQAASYR--DGRV 267 (488)
T ss_pred eCCCceEEEeccC-CCCeEEEEEecCCC-CCCCCCCHHHHHHHHHHhhCCCCccccceeEEeccccceeccccc--CCcE
Confidence 2222211111111 12344333322111 222345667777777777765443333334456777788999998 6999
Q ss_pred EEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHH
Q 008258 362 ILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNF 428 (572)
Q Consensus 362 ~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~ 428 (572)
+|+|||||.|+|++|||||+||+||+||+|||+.++++.+.+.+|++|++||+|+++.++..+....
T Consensus 268 ~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~~~~~lLd~Ye~eRrp~~~~~~~~t~~~~ 334 (488)
T PRK06834 268 LLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPVAARVLRNTMAQV 334 (488)
T ss_pred EEEeeccccCCccccccccccHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998999999999999999999888775554
No 9
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=100.00 E-value=1.3e-45 Score=383.72 Aligned_cols=350 Identities=27% Similarity=0.440 Sum_probs=249.5
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~ 122 (572)
++||+||||||+||++|+.|+|+|++|+||||++.+...++++.++++++++|+.+ |+++.+...+.+...+....+..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~~~~~~~~~~~~~~ 79 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRL-GLLDEILARGSPHEVMRIFFYDG 79 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHT-TEHHHHHHHSEEECEEEEEEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccc-cchhhhhhhcccccceeeEeecc
Confidence 47999999999999999999999999999999999999999999999999999999 99999998775544333333322
Q ss_pred CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (572)
Q Consensus 123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~ 202 (572)
..+.............+.....+.....++|..|++.|.+.+.+.|+ +++++++++++++
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv-------------------~i~~~~~v~~~~~ 139 (356)
T PF01494_consen 80 -ISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGV-------------------DIRFGTRVVSIEQ 139 (356)
T ss_dssp -TTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTE-------------------EEEESEEEEEEEE
T ss_pred -cCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhh-------------------hheeeeecccccc
Confidence 11111111110011111111223344678899999999999999886 9999999999999
Q ss_pred eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCc--ceEEEEEEecCccccccccCCCceEEE
Q 008258 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDL--QKLVSVHFLSKDLGDYLLNERPGMLFF 280 (572)
Q Consensus 203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (572)
+++++++++.+..+| +.++++||+||||||++|.||++++....+.... ..++.+.+.. .+..+. .+ .++
T Consensus 140 d~~~~~~~~~~~~~g--~~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~--~~~ 211 (356)
T PF01494_consen 140 DDDGVTVVVRDGEDG--EEETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDS-DLSDPW---ED--HCF 211 (356)
T ss_dssp ETTEEEEEEEETCTC--EEEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEEC-HSHTTT---SC--EEE
T ss_pred cccccccccccccCC--ceeEEEEeeeecccCcccchhhhccccccCcccccccccccccccc-cccccc---cc--ccc
Confidence 999999888854444 4568999999999999999999998775544322 2333444333 222221 11 445
Q ss_pred EEecCceE-EEEEecC-CCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceeccccccc
Q 008258 281 IFNTEAIG-VLVAHDL-KEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCC 357 (572)
Q Consensus 281 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~ 357 (572)
+..+...+ .+.+... ....+.+.+++..+. ........+.+.+.+...++......++.....|++...++++|.
T Consensus 212 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 289 (356)
T PF01494_consen 212 IYSPPSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEIFGPDLLETEIDEISAWPIPQRVADRWV-- 289 (356)
T ss_dssp EEEETTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHHTCHHHHEEEEEEEEEEEEEEESSSE--
T ss_pred cccccccceeEeeccCCccceEEEeeeccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence 55555443 3444433 223455666654432 222333445566666666655444456667778888888888887
Q ss_pred CCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHH
Q 008258 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTAL 423 (572)
Q Consensus 358 ~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~ 423 (572)
+|||+|+|||||.|+|++|||+|+||+||.+|+++|+.+.+|.+.+++|+.|+++|+++++.+++.
T Consensus 290 ~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g~~~~~~l~~Y~~~r~~~~~~~~~~ 355 (356)
T PF01494_consen 290 KGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKGEASEEALKAYEQERRPRARKAVQF 355 (356)
T ss_dssp ETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 589999999999999999999999999999999999999998888999999999999999987764
No 10
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=7e-43 Score=367.72 Aligned_cols=340 Identities=24% Similarity=0.338 Sum_probs=250.1
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC-CCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeee
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN-KAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~-~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~ 121 (572)
.+||+||||||+||++|++|++.|++|+||||. +.....+++..|+++++++|+++ |+.+++...+.+...... .
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~l-G~~~~i~~~~~~~~~~~~--~- 77 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERL-GLWDRLEALGVPPLHVMV--V- 77 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHc-CChhhhhhccCCceeeEE--E-
Confidence 479999999999999999999999999999998 46667789999999999999999 997888876654322111 1
Q ss_pred eCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258 122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (572)
Q Consensus 122 ~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~ 201 (572)
+..+.....++... . ..+...+.++|..|...|.+.+.+.+ +++++++++|+.++
T Consensus 78 -~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~l~~~L~~~~~~~~------------------~v~~~~~~~v~~~~ 132 (387)
T COG0654 78 -DDGGRRLLIFDAAE---L---GRGALGYVVPRSDLLNALLEAARALP------------------NVTLRFGAEVEAVE 132 (387)
T ss_pred -ecCCceeEEecccc---c---CCCcceEEeEhHHHHHHHHHHHhhCC------------------CcEEEcCceEEEEE
Confidence 12222111222111 0 11333577999999999999998865 24999999999999
Q ss_pred eeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcC-CccccccCcceEEEEEEecCccccccccCCCceEEE
Q 008258 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVG-IDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280 (572)
Q Consensus 202 ~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg-~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (572)
++++.+++++.. +|. +++||+||||||.+|.||+.++ ....+..+.+.++......+ .+.+...+.
T Consensus 133 ~~~~~v~v~l~~--dG~----~~~a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~-------~~~~~~~~~ 199 (387)
T COG0654 133 QDGDGVTVTLSF--DGE----TLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPE-------EPHEGRAGE 199 (387)
T ss_pred EcCCceEEEEcC--CCc----EEecCEEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecC-------CCCCCeEEE
Confidence 999999988863 443 7999999999999999999999 45555566666666655432 234455555
Q ss_pred EEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCC--CCceeEE-EecCccccceeccccccc
Q 008258 281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWE--LSDIDVI-DIKPWVMHAEVAEKFLCC 357 (572)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~-~~~~w~~~~~~a~~~~~~ 357 (572)
.+.+.....+++........+|..+. ...+....++++...+.+.+.+++. ...+... ....|++....+++|.
T Consensus 200 ~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pl~~~~a~~~~-- 276 (387)
T COG0654 200 RFTHAGPFALLPLPDNRSSVVWSLPP-GPAEDLQGLSDEEFLRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERYR-- 276 (387)
T ss_pred EecCCCceEEEecCCCceeEEEECCh-hhHHHHhcCCHHHHHHHHHHhcCcccccceEEEccccccccccchhhhhee--
Confidence 66665533333333222333343331 2223445677777777788877776 3333333 2345677788899998
Q ss_pred CCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHH
Q 008258 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN 427 (572)
Q Consensus 358 ~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~ 427 (572)
++||+|+|||||.++|.+|||+|+||+||.+|+|+|+...++..++.+|+.|+++|++++..++..+...
T Consensus 277 ~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~ 346 (387)
T COG0654 277 RGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPRAEAIQKLSRAL 346 (387)
T ss_pred cCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCccHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999988743338999999999999999988887633
No 11
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=8.6e-43 Score=368.94 Aligned_cols=340 Identities=18% Similarity=0.199 Sum_probs=228.2
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC------CCeeeeChhHHHHHHhhcchHHHHHhc-CCCcccc
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH------PQAHFINNRYALVFRKLDGLAEEIERS-QPPVDLW 115 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~------~~a~~l~~rt~e~l~~l~Gl~~~l~~~-~~~~~~~ 115 (572)
++||+||||||+|+++|++|+++|++|+||||.+.+... .++..++++++++|+++ |+++++.+. ..+...+
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~l-Gl~~~~~~~~~~~~~~~ 81 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRL-GVWQDILARRASCYHGM 81 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHc-CCchhhhhhcCccccEE
Confidence 489999999999999999999999999999999875432 36778999999999999 999998764 3444322
Q ss_pred cceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEecc
Q 008258 116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH 195 (572)
Q Consensus 116 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~ 195 (572)
. .+..+..++.. .+ ...+ ..+...+.++|..|+++|.+.+.+.+ ++++++++
T Consensus 82 ~--~~~~~~~~~~~--~~---~~~~---~~~~~~~~i~r~~l~~~L~~~~~~~~------------------~v~i~~~~ 133 (400)
T PRK08013 82 E--VWDKDSFGRIA--FD---DQSM---GYSHLGHIIENSVIHYALWQKAQQSS------------------DITLLAPA 133 (400)
T ss_pred E--EEeCCCCceEE--Ec---cccc---CCCccEEEEEhHHHHHHHHHHHhcCC------------------CcEEEcCC
Confidence 1 11111112211 11 0000 11222356889999999999987752 23899999
Q ss_pred EEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCC
Q 008258 196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP 275 (572)
Q Consensus 196 ~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (572)
++++++++++++++++. +|. +++||+||||||++|.||+++++++.+..+.+..+...+... ...+
T Consensus 134 ~v~~i~~~~~~v~v~~~---~g~----~i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~-------~~~~ 199 (400)
T PRK08013 134 ELQQVAWGENEAFLTLK---DGS----MLTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTE-------EPHD 199 (400)
T ss_pred eeEEEEecCCeEEEEEc---CCC----EEEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEecc-------CCCC
Confidence 99999999999888875 453 689999999999999999999998776654444443333221 1122
Q ss_pred ceEEEEEecCceEEEEEecCCC-CeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEE-ecCccccceeccc
Q 008258 276 GMLFFIFNTEAIGVLVAHDLKE-GEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEK 353 (572)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~-~~~w~~~~~~a~~ 353 (572)
...+..+.++....+++..... ..+++..+... .+.....+++.+.+.+...++......++.+ ...|++...++++
T Consensus 200 ~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 278 (400)
T PRK08013 200 AVARQVFHGDGILAFLPLSDPHLCSIVWSLSPEE-AQRMQQAPEEEFNRALAIAFDNRLGLCELESERQVFPLTGRYARQ 278 (400)
T ss_pred CEEEEEEcCCCCEEEEECCCCCeEEEEEEcCHHH-HHHHHcCCHHHHHHHHHHHHhHhhCceEecCCccEEecceeeccc
Confidence 3334444444433333332211 12333332110 0111233444555555444332222333332 2245666678889
Q ss_pred ccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHh-cCCC--chhhHhhHHHhhhHHHHHhHHHHHHHH
Q 008258 354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL-KDIA--PASILNTYETERKPIAEFNTALSVQNF 428 (572)
Q Consensus 354 ~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~-~g~~--~~~~L~~Y~~eR~~~a~~~~~~s~~~~ 428 (572)
|. +|||+|+|||||.++|++|||||+||+||.+|+|+|+.++ ++.+ ...+|++|+++|++++..++..+....
T Consensus 279 ~~--~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~ 354 (400)
T PRK08013 279 FA--AHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFR 354 (400)
T ss_pred cc--CCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97 6999999999999999999999999999999999999876 3433 235899999999999987776554443
No 12
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=3.1e-41 Score=356.22 Aligned_cols=340 Identities=21% Similarity=0.283 Sum_probs=226.6
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC--CCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF--STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~--~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (572)
++||+||||||+||++|+.|+++|++|+|+||++.+ ...+++..++++++++|+++ |+++++...+.+...+. +
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~l-Gl~~~l~~~~~~~~~~~---~ 77 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREA-GVGERMDREGLVHDGIE---L 77 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHc-CChHHHHhcCCccCcEE---E
Confidence 479999999999999999999999999999999864 33567888999999999999 99999988776653322 1
Q ss_pred eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (572)
Q Consensus 121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v 200 (572)
.. .|+ ...++.. ....+.....++|..+.+.|++.+.+.|+ +++++++++++
T Consensus 78 ~~--~g~-~~~~~~~------~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv-------------------~v~~~~~v~~i 129 (392)
T PRK08243 78 RF--DGR-RHRIDLT------ELTGGRAVTVYGQTEVTRDLMAARLAAGG-------------------PIRFEASDVAL 129 (392)
T ss_pred EE--CCE-EEEeccc------cccCCceEEEeCcHHHHHHHHHHHHhCCC-------------------eEEEeeeEEEE
Confidence 11 233 2222211 10112223456788999999888877776 89999999999
Q ss_pred ee-eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEe--cCccccccccCCCce
Q 008258 201 SA-TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFL--SKDLGDYLLNERPGM 277 (572)
Q Consensus 201 ~~-~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~--~~~l~~~~~~~~~~~ 277 (572)
++ +++.+.|++. ++| ++.+++||+||||||++|.||++++..... .+...+...+. ..+. ...+..
T Consensus 130 ~~~~~~~~~V~~~--~~G--~~~~i~ad~vVgADG~~S~vR~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~ 198 (392)
T PRK08243 130 HDFDSDRPYVTYE--KDG--EEHRLDCDFIAGCDGFHGVSRASIPAGALR--TFERVYPFGWLGILAEA-----PPVSDE 198 (392)
T ss_pred EecCCCceEEEEE--cCC--eEEEEEeCEEEECCCCCCchhhhcCcchhh--ceecccCceEEEEeCCC-----CCCCCc
Confidence 87 6677777764 244 345799999999999999999999754211 11111000000 0010 011111
Q ss_pred EEEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCC----CCceeEEEecCccccceeccc
Q 008258 278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWE----LSDIDVIDIKPWVMHAEVAEK 353 (572)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~i~~~~~w~~~~~~a~~ 353 (572)
.++...+....++...+.....+++.++. ......++++...+.+++.++.. .....+.....|++...++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (392)
T PRK08243 199 LIYANHERGFALCSMRSPTRSRYYLQCPL---DDKVEDWSDERFWDELRRRLPPEDAERLVTGPSIEKSIAPLRSFVAEP 275 (392)
T ss_pred eEEeeCCCceEEEecCCCCcEEEEEEecC---CCCcccCChhHHHHHHHHhcCcccccccccCccccccceeeeeceecc
Confidence 22222333333322222111233443332 12234455555555666555431 111122223345556667788
Q ss_pred ccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258 354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (572)
Q Consensus 354 ~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~ 431 (572)
|. +|||+|+|||||.++|++|||+|+||+||.+|||+|+.++++ ..+.+|++|+++|++++..++..+....+..
T Consensus 276 ~~--~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~-~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~ 350 (392)
T PRK08243 276 MQ--YGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYRE-GDTALLDAYSATALRRVWKAERFSWWMTSML 350 (392)
T ss_pred ce--eCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 86 599999999999999999999999999999999999998765 3578999999999999998888877665544
No 13
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=4.2e-41 Score=356.87 Aligned_cols=342 Identities=20% Similarity=0.244 Sum_probs=229.9
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC-CCCC----CCCCeeeeChhHHHHHHhhcchHHHHHhc-CCCcccc
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN-KAFS----THPQAHFINNRYALVFRKLDGLAEEIERS-QPPVDLW 115 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~-~~~~----~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~-~~~~~~~ 115 (572)
..+||+||||||+||++|++|+++|++|+|+|++ +.+. ..+++..++++++++|+++ |+++++.+. +.+...+
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~~ 81 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNL-GAWQGIEARRAAPYIAM 81 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhC-CchhhhhhhhCCcccEE
Confidence 3589999999999999999999999999999997 3221 2357889999999999999 999999864 4444322
Q ss_pred cceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEecc
Q 008258 116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH 195 (572)
Q Consensus 116 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~ 195 (572)
. ++.....+....... .. ..+...+.+.+..|++.|++.+.+.+ ++++++++
T Consensus 82 ~--~~~~~~~~~~~~~~~-----~~---~~~~~g~~~~~~~l~~~L~~~~~~~~------------------~v~v~~~~ 133 (405)
T PRK08850 82 E--VWEQDSFARIEFDAE-----SM---AQPDLGHIVENRVIQLALLEQVQKQD------------------NVTLLMPA 133 (405)
T ss_pred E--EEeCCCCceEEEecc-----cc---CCCccEEEEEHHHHHHHHHHHHhcCC------------------CeEEEcCC
Confidence 1 121111122111100 00 01111234677889999999886642 24899999
Q ss_pred EEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCC
Q 008258 196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP 275 (572)
Q Consensus 196 ~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (572)
++++++++++.+++++. +|+ +++||+||||||++|.||++++++..+..+.+..+...+... ....
T Consensus 134 ~v~~i~~~~~~~~v~~~---~g~----~~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~-------~~~~ 199 (405)
T PRK08850 134 RCQSIAVGESEAWLTLD---NGQ----ALTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTV-------DPHN 199 (405)
T ss_pred eeEEEEeeCCeEEEEEC---CCC----EEEeCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEcc-------CCCC
Confidence 99999998888888775 553 689999999999999999999988766554333333333221 1223
Q ss_pred ceEEEEEecCceEEEEEecCCCCeE--EEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEE-ecCccccceecc
Q 008258 276 GMLFFIFNTEAIGVLVAHDLKEGEF--ILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAE 352 (572)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~-~~~w~~~~~~a~ 352 (572)
...+.++.++....+++... .+.+ ++..+.... +.....+++.+.+.+.+.++.....+++.. ...|++....++
T Consensus 200 ~~~~~~~~~~g~~~~lp~~~-~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~ 277 (405)
T PRK08850 200 SVARQIFTPQGPLAFLPMSE-PNMSSIVWSTEPLRA-EALLAMSDEQFNKALTAEFDNRLGLCEVVGERQAFPLKMRYAR 277 (405)
T ss_pred CEEEEEEcCCCceEEEECCC-CCeEEEEEECCHHHH-HHHHcCCHHHHHHHHHHHHhhhhCcEEEcccccEEecceeecc
Confidence 34455566655444443321 1223 333321100 111233444555555555443333333322 224556667788
Q ss_pred cccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc-CC--CchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258 353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DI--APASILNTYETERKPIAEFNTALSVQNFR 429 (572)
Q Consensus 353 ~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~-g~--~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~ 429 (572)
+|. ++||+|+|||||.++|..|||+|+||+||.+|+|+|+.+.+ +. ..+.+|++|+++|++++..++..+....+
T Consensus 278 ~~~--~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~ 355 (405)
T PRK08850 278 DFV--RERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRD 355 (405)
T ss_pred ccc--cCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 887 69999999999999999999999999999999999998763 32 24689999999999999988887754443
Q ss_pred H
Q 008258 430 A 430 (572)
Q Consensus 430 ~ 430 (572)
.
T Consensus 356 ~ 356 (405)
T PRK08850 356 L 356 (405)
T ss_pred H
Confidence 3
No 14
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=1.5e-40 Score=350.74 Aligned_cols=346 Identities=20% Similarity=0.235 Sum_probs=226.3
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCC-cccccce
Q 008258 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPP-VDLWRKF 118 (572)
Q Consensus 40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~-~~~~~~~ 118 (572)
++..+||+||||||+||++|+.|++.|++|+|+||++.+...++++.++++++++|+++ |+++.+.+.+.. ...+.
T Consensus 2 ~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~l-Gl~~~~~~~~~~~~~~~~-- 78 (388)
T PRK07045 2 KNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAM-GLLDDVFAAGGLRRDAMR-- 78 (388)
T ss_pred CCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHc-CCHHHHHhcccccccceE--
Confidence 45668999999999999999999999999999999999887778888999999999999 999998876543 22111
Q ss_pred eeeeCCCCCeeeeecCCCccccccccCCcc-ccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEE
Q 008258 119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVS-VAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC 197 (572)
Q Consensus 119 ~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~-~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v 197 (572)
. ...|+.+...+.... .+.. .+.++|..|+++|++.+...+ ++++++++++
T Consensus 79 -~--~~~g~~~~~~~~~~~-------~~~g~~~~i~r~~l~~~L~~~~~~~~------------------gv~i~~~~~v 130 (388)
T PRK07045 79 -L--YHDKELIASLDYRSA-------SALGYFILIPCEQLRRLLLAKLDGLP------------------NVRLRFETSI 130 (388)
T ss_pred -E--ecCCcEEEEecCCcc-------ccCCceEEccHHHHHHHHHHHHhcCC------------------CeeEEeCCEE
Confidence 1 124555544332110 0111 245789999999999886532 2489999999
Q ss_pred EEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhh-cCCccccccCcceEEEEEEecCccccccccCCCc
Q 008258 198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKL-VGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPG 276 (572)
Q Consensus 198 ~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~-lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~ 276 (572)
++++++++++.+.+.+. +|+ ++++|+||||||++|.||++ ++++..+...........+.... ..+.
T Consensus 131 ~~i~~~~~~~~~~v~~~-~g~----~~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 198 (388)
T PRK07045 131 ERIERDADGTVTSVTLS-DGE----RVAPTVLVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTD-------SVRE 198 (388)
T ss_pred EEEEECCCCcEEEEEeC-CCC----EEECCEEEECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccC-------Cccc
Confidence 99998877754444432 453 68999999999999999997 45543332222221211111110 0011
Q ss_pred eEEEEEec-CceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCc-eeEE-Eec---Ccccccee
Q 008258 277 MLFFIFNT-EAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD-IDVI-DIK---PWVMHAEV 350 (572)
Q Consensus 277 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~i~-~~~---~w~~~~~~ 350 (572)
....++.+ ....++++.......+++.++.....+...+.+.+.+.+.+.+.+++.... ++.. ... .+++....
T Consensus 199 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (388)
T PRK07045 199 CNRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLGRMN 278 (388)
T ss_pred cceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhcCccchHHHhccCcccccceeecCccc
Confidence 11122333 223333333222222333333221111222344555666666555432211 1111 111 23445556
Q ss_pred cccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCC-CchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258 351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI-APASILNTYETERKPIAEFNTALSVQNFR 429 (572)
Q Consensus 351 a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~-~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~ 429 (572)
+++|. .|||+|+|||||.++|++|||+|+||+||++|||+|+.++++. ..+.+|++|+++|+|++..++..+....+
T Consensus 279 ~~~~~--~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~ 356 (388)
T PRK07045 279 LDRYH--KRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPVNEAVISYGHALAT 356 (388)
T ss_pred ccccc--CCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhHHHHHHhhhHHHhh
Confidence 67886 5999999999999999999999999999999999999876553 45789999999999999988877664443
Q ss_pred H
Q 008258 430 A 430 (572)
Q Consensus 430 ~ 430 (572)
.
T Consensus 357 ~ 357 (388)
T PRK07045 357 T 357 (388)
T ss_pred h
Confidence 3
No 15
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=9.6e-41 Score=350.18 Aligned_cols=330 Identities=17% Similarity=0.219 Sum_probs=228.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC----CCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCccccccee
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF----STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~----~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~ 119 (572)
+||+||||||+|+++|++|++.|++|+|+|+.+.. ...+++..++++++++|+.+ |+++.+.+.+.+...+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~~--- 77 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSI-DIWEELEKFVAEMQDIY--- 77 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHC-CcHHHHHhhcCCCcEEE---
Confidence 68999999999999999999999999999997532 23478999999999999999 99999887665554322
Q ss_pred eeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEE
Q 008258 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (572)
Q Consensus 120 ~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~ 199 (572)
..+..|.....++.. ..+...+.++|..|++.|++.+.+.+. +++++++++++
T Consensus 78 -~~~~~g~~~~~~~~~--------~~~~~g~~v~r~~L~~~L~~~~~~~~~------------------v~~~~~~~v~~ 130 (374)
T PRK06617 78 -VVDNKASEILDLRND--------ADAVLGYVVKNSDFKKILLSKITNNPL------------------ITLIDNNQYQE 130 (374)
T ss_pred -EEECCCceEEEecCC--------CCCCcEEEEEHHHHHHHHHHHHhcCCC------------------cEEECCCeEEE
Confidence 112344433333211 011123678999999999999987652 48899999999
Q ss_pred EeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEE
Q 008258 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF 279 (572)
Q Consensus 200 v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (572)
+.++++++++++. ++ +++||+||||||++|.||+.++++..+..+ +..+....... .......+
T Consensus 131 i~~~~~~v~v~~~---~~-----~~~adlvIgADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~-------~~~~~~~~ 194 (374)
T PRK06617 131 VISHNDYSIIKFD---DK-----QIKCNLLIICDGANSKVRSHYFANEIEKPY-QTALTFNIKHE-------KPHENCAM 194 (374)
T ss_pred EEEcCCeEEEEEc---CC-----EEeeCEEEEeCCCCchhHHhcCCCcccccC-CeEEEEEEecc-------CCCCCEEE
Confidence 9999898887764 33 689999999999999999999876554443 44443332211 12233334
Q ss_pred EEEecCceEEEEEecCCC-CeEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCceeEEE-ecCccccceecccccc
Q 008258 280 FIFNTEAIGVLVAHDLKE-GEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEKFLC 356 (572)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~-~~~w~~~~~~a~~~~~ 356 (572)
..+.+.+...+++..... ..++|..+ +++ ......+++.+.+++....++....+.+.. ...|++....+++|.
T Consensus 195 ~~~~~~g~~~~lPl~~~~~~~~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~- 271 (374)
T PRK06617 195 EHFLPLGPFALLPLKDQYASSVIWSTS--SDQAALIVNLPVEEVRFLTQRNAGNSLGKITIDSEISSFPLKARIANRYF- 271 (374)
T ss_pred EEecCCCCEEEeECCCCCeEEEEEeCC--HHHHHHHHcCCHHHHHHHHHHhhchhcCceeeccceeEEEeeeeecccee-
Confidence 445454443334333211 12223222 111 111233445555555655554333343332 456777777888897
Q ss_pred cCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258 357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (572)
Q Consensus 357 ~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~ 431 (572)
+|||+|+|||||.++|.+|||+|+||+||.+|++.|.. ..+|++|+++|+++...++..+....+.+
T Consensus 272 -~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~-------~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f 338 (374)
T PRK06617 272 -HNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN-------NGTLQEYQKLRQEDNFIMYKLTDELNNIF 338 (374)
T ss_pred -cCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHcC-------cchHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999998831 35899999999999998888776544433
No 16
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=8.8e-41 Score=357.20 Aligned_cols=343 Identities=22% Similarity=0.275 Sum_probs=230.9
Q ss_pred CCEEEECCCHHHHHHHHHHHh----CCCCEEEEcCCCCCCC------------CCCeeeeChhHHHHHHhhcchHHHHHh
Q 008258 44 VPVLIVGAGPVGLVLSILLTK----LGIKCSVLEKNKAFST------------HPQAHFINNRYALVFRKLDGLAEEIER 107 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~----~Gi~v~viEr~~~~~~------------~~~a~~l~~rt~e~l~~l~Gl~~~l~~ 107 (572)
+||+||||||+|+++|+.|++ +|++|+||||++.+.. .+++..|+++++++|+.+ |+++++.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~l-G~~~~l~~ 79 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKI-GAWDHIQS 79 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHc-Cchhhhhh
Confidence 599999999999999999999 8999999999654432 357999999999999999 99999976
Q ss_pred cC-CCcccccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCccccccccc
Q 008258 108 SQ-PPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLL 186 (572)
Q Consensus 108 ~~-~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~ 186 (572)
.. .+...+. .+ +..+.....++... ..+...+.++|..|++.|.+.+.+.+.
T Consensus 80 ~~~~~~~~~~--~~--~~~~~~~~~~~~~~-------~~~~~~~~i~~~~l~~~L~~~~~~~~~---------------- 132 (437)
T TIGR01989 80 DRIQPFGRMQ--VW--DGCSLALIRFDRDN-------GKEDMACIIENDNIQNSLYNRLQEYNG---------------- 132 (437)
T ss_pred hcCCceeeEE--Ee--cCCCCceEEeecCC-------CCCceEEEEEHHHHHHHHHHHHHhCCC----------------
Confidence 53 3433221 11 11222111111100 011123568899999999999877641
Q ss_pred ccceEEeccEEEEEee-------eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEE
Q 008258 187 QGREILMGHECVSVSA-------TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSV 259 (572)
Q Consensus 187 ~~~~i~~g~~v~~v~~-------~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~ 259 (572)
++++++++++|+++++ +++++++++. +|+ +++||+||||||++|.||+.+|+++.+..+.+..+..
T Consensus 133 ~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~---~g~----~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~ 205 (437)
T TIGR01989 133 DNVKILNPARLISVTIPSKYPNDNSNWVHITLS---DGQ----VLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVA 205 (437)
T ss_pred CCeEEecCCeeEEEEeccccccCCCCceEEEEc---CCC----EEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEE
Confidence 1248999999999975 2456776664 553 7999999999999999999999999888766655444
Q ss_pred EEecCccccccccCCCceEEEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhC---------
Q 008258 260 HFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVG--------- 330 (572)
Q Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------- 330 (572)
.+.... ...+...+..|.+++...+++.......+++..+.. ......+.+++.+.+.+.+.++
T Consensus 206 ~v~~~~------~~~~~~~~~~f~~~g~~~~lPl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~ 278 (437)
T TIGR01989 206 TLKLEE------ATENDVAWQRFLPTGPIALLPLPDNNSTLVWSTSPE-EALRLLSLPPEDFVDALNAAFDLGYSDHPYS 278 (437)
T ss_pred EEEccc------CCCCCeEEEEECCCCCEEEeECCCCCEEEEEeCCHH-HHHHHHcCCHHHHHHHHHHHhcccccccccc
Confidence 332211 123344455566665444444432222344433210 0011123455555555544331
Q ss_pred ---------------CC----------CC-ceeEE--EecCccccceecccccccCCcEEEEecccccCCCCCCCCchhH
Q 008258 331 ---------------WE----------LS-DIDVI--DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTG 382 (572)
Q Consensus 331 ---------------~~----------~~-~~~i~--~~~~w~~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~a 382 (572)
+. +. ...+. ....|++....+++|. .+||+|+|||||.++|.+|||||+|
T Consensus 279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~rv~l~GDAAH~~~P~~GqG~n~~ 356 (437)
T TIGR01989 279 YLLDYAMEKLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPLGLGHADEYV--TKRVALVGDAAHRVHPLAGQGVNLG 356 (437)
T ss_pred cccccccccccccccccccccccccccCchhheeecccceeEEecccchhhcc--CCCEEEEchhhcCCCCChhhhHHHH
Confidence 10 00 01111 1134556666788887 6999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCC---chhhHhhHHHhhhHHHHHhHHHHHHHHHH
Q 008258 383 VQDAHNLAWKIASVLKDIA---PASILNTYETERKPIAEFNTALSVQNFRA 430 (572)
Q Consensus 383 i~DA~~La~~La~~~~g~~---~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~ 430 (572)
|+||.+|+|+|+.+.++.. .+.+|++|+++|+++++.++..+....+.
T Consensus 357 l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~v~~~t~~l~~l 407 (437)
T TIGR01989 357 FGDVASLVKALAEAVSVGADIGSISSLKPYERERYAKNVVLLGLVDKLHKL 407 (437)
T ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998875432 35799999999999999888877654443
No 17
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=2.2e-40 Score=352.80 Aligned_cols=348 Identities=21% Similarity=0.245 Sum_probs=228.7
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC--CCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccce
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST--HPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF 118 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~--~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~ 118 (572)
..++||+||||||+||++|++|+++|++|+||||++.+.. .++++.++++++++|+++ |+++++...+.+....
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~--- 91 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGI-GVWEKILPQIGKFRQI--- 91 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHC-ChhhhhHhhcCCccEE---
Confidence 4468999999999999999999999999999999987643 477889999999999999 9999988766554321
Q ss_pred eeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEE
Q 008258 119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV 198 (572)
Q Consensus 119 ~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~ 198 (572)
.+ .+..+.....+... +.. ..........| .|.+.|++.+.+.+ +++++++++++
T Consensus 92 ~~-~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~-~l~~~L~~~~~~~~------------------~v~i~~~~~v~ 146 (415)
T PRK07364 92 RL-SDADYPGVVKFQPT---DLG--TEALGYVGEHQ-VLLEALQEFLQSCP------------------NITWLCPAEVV 146 (415)
T ss_pred EE-EeCCCCceeeeccc---cCC--CCccEEEEecH-HHHHHHHHHHhcCC------------------CcEEEcCCeeE
Confidence 11 12223222111110 000 00111222334 67788888887652 24899999999
Q ss_pred EEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceE
Q 008258 199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML 278 (572)
Q Consensus 199 ~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (572)
+++++++++++++. +++ .+.+++||+||||||++|.||+.+++...+..+++..+...+.... ......
T Consensus 147 ~v~~~~~~~~v~~~--~~~--~~~~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 215 (415)
T PRK07364 147 SVEYQQDAATVTLE--IEG--KQQTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEA-------PHNDIA 215 (415)
T ss_pred EEEecCCeeEEEEc--cCC--cceEEeeeEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccC-------CCCCEE
Confidence 99998888888775 222 2347999999999999999999999887777666655544433211 111112
Q ss_pred EEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEE-EecCccccceeccccccc
Q 008258 279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEKFLCC 357 (572)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~-~~~~w~~~~~~a~~~~~~ 357 (572)
+..+.+.....+++.+.....+++..+... .......+.+...+.+.+.++.....++.. ....|++....+++|.
T Consensus 216 ~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 292 (415)
T PRK07364 216 YERFWPSGPFAILPLPGNRCQIVWTAPHAQ-AKALLALPEAEFLAELQQRYGDQLGKLELLGDRFLFPVQLMQSDRYV-- 292 (415)
T ss_pred EEEecCCCCeEEeECCCCCEEEEEECCHHH-HHHHHCCCHHHHHHHHHHHhhhhhcCceecCCCceecchhhhhhhhc--
Confidence 212223333333333322222333222110 011123344455555555443322233322 2234556556677886
Q ss_pred CCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc-CCC--chhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DIA--PASILNTYETERKPIAEFNTALSVQNFRAA 431 (572)
Q Consensus 358 ~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~-g~~--~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~ 431 (572)
+|||+|+|||||.++|++|||+|+||+||++|+|+|...++ +.+ ...+|+.|+++|++++..++..+....+.+
T Consensus 293 ~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~ 369 (415)
T PRK07364 293 QHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLF 369 (415)
T ss_pred CCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999998763 222 348999999999999988777766544433
No 18
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=1.8e-40 Score=349.37 Aligned_cols=336 Identities=18% Similarity=0.250 Sum_probs=226.9
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC--C----CCCeeeeChhHHHHHHhhcchHHHHHhc-CCCcccc
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS--T----HPQAHFINNRYALVFRKLDGLAEEIERS-QPPVDLW 115 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~--~----~~~a~~l~~rt~e~l~~l~Gl~~~l~~~-~~~~~~~ 115 (572)
.+||+||||||+||++|++|++.|++|+|||+.+... . ..++..++++++++|+++ |+++.+.+. ..+...+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-G~~~~~~~~~~~~~~~~ 81 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESL-GAWSSIVAMRVCPYKRL 81 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHC-CCchhhhHhhCCccceE
Confidence 3799999999999999999999999999999886321 1 225578999999999999 999998763 3343222
Q ss_pred cceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEecc
Q 008258 116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH 195 (572)
Q Consensus 116 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~ 195 (572)
. .+.. .... ..... .++. .+...+.+.+..|...|++.+.+.+ ++++++++
T Consensus 82 ~--~~~~-~~~~--~~~~~---~~~~---~~~~g~~i~~~~l~~~L~~~~~~~~------------------~i~i~~~~ 132 (384)
T PRK08849 82 E--TWEH-PECR--TRFHS---DELN---LDQLGYIVENRLIQLGLWQQFAQYP------------------NLTLMCPE 132 (384)
T ss_pred E--EEeC-CCce--EEecc---cccC---CCccEEEEEcHHHHHHHHHHHHhCC------------------CeEEECCC
Confidence 2 1111 1111 11110 0000 0111134556678888888876642 24899999
Q ss_pred EEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCC
Q 008258 196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP 275 (572)
Q Consensus 196 ~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (572)
++++++++++++++++. +|. +++||+||||||++|.||+++++...+..+.+..+.+..... ...+
T Consensus 133 ~v~~~~~~~~~~~v~~~---~g~----~~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~-------~~~~ 198 (384)
T PRK08849 133 KLADLEFSAEGNRVTLE---SGA----EIEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETE-------QPQQ 198 (384)
T ss_pred ceeEEEEcCCeEEEEEC---CCC----EEEeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcC-------CCCC
Confidence 99999999999888875 553 789999999999999999999987766555444333332221 1122
Q ss_pred ceEEEEEecCceEEEEEecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceecccc
Q 008258 276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKF 354 (572)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~ 354 (572)
...+..+.|.....+++.+.....+++..+ +.. ......+++...+.+.+.++.....+++.....|++....+++|
T Consensus 199 ~~~~~~~~~~g~~~~~pl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 276 (384)
T PRK08849 199 DITWQQFTPSGPRSFLPLCGNQGSLVWYDS--PKRIKQLSAMNPEQLRSEILRHFPAELGEIKVLQHGSFPLTRRHAQQY 276 (384)
T ss_pred CEEEEEeCCCCCEEEeEcCCCceEEEEECC--HHHHHHHHcCCHHHHHHHHHHHhhhhhCcEEeccceEeeccccccchh
Confidence 334444444433333333322233444321 110 01123456666666666665555555555555677777788899
Q ss_pred cccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHH
Q 008258 355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNF 428 (572)
Q Consensus 355 ~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~ 428 (572)
. +|||+|+|||||.|+|.+|||+|+||+||.+|++.|.. .+...+.+|+.|+.+|+++...++..+....
T Consensus 277 ~--~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~--~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~ 346 (384)
T PRK08849 277 V--KNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEK--QGVLNDASFARYERRRRPDNLLMQTGMDLFY 346 (384)
T ss_pred c--cCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 7 69999999999999999999999999999999999864 3445688999999999999987766554333
No 19
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=2e-40 Score=351.86 Aligned_cols=343 Identities=17% Similarity=0.207 Sum_probs=228.9
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC--------CCCCCeeeeChhHHHHHHhhcchHHHHHhc-CCCcc
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF--------STHPQAHFINNRYALVFRKLDGLAEEIERS-QPPVD 113 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~--------~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~-~~~~~ 113 (572)
.+||+||||||+||++|+.|+++|++|+||||.+.. ...+++..++++++++|+.+ |+++++.+. ..+..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~ 80 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERL-GAWDGIAARRASPYS 80 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHC-ChhhhhhHhhCccce
Confidence 379999999999999999999999999999998731 22457788999999999999 999998753 33432
Q ss_pred cccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEe
Q 008258 114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM 193 (572)
Q Consensus 114 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~ 193 (572)
.+. . .+..|.....++. ... ..+...+.+++..|.+.|++.+.+.|+ ++++
T Consensus 81 ~~~---~-~~~~~~~~~~~~~---~~~---~~~~~g~~i~~~~l~~~L~~~~~~~gv-------------------~v~~ 131 (405)
T PRK05714 81 EMQ---V-WDGSGTGQIHFSA---ASV---HAEVLGHIVENRVVQDALLERLHDSDI-------------------GLLA 131 (405)
T ss_pred eEE---E-EcCCCCceEEecc---ccc---CCCccEEEEEhHHHHHHHHHHHhcCCC-------------------EEEc
Confidence 221 1 1222321111110 000 111222457788999999998887765 8999
Q ss_pred ccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccC
Q 008258 194 GHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNE 273 (572)
Q Consensus 194 g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~ 273 (572)
++++++++++++++++++. +|+ +++||+||||||++|.||+.+++...+..+....+...+... ..
T Consensus 132 ~~~v~~i~~~~~~v~v~~~---~g~----~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~-------~~ 197 (405)
T PRK05714 132 NARLEQMRRSGDDWLLTLA---DGR----QLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCS-------EP 197 (405)
T ss_pred CCEEEEEEEcCCeEEEEEC---CCC----EEEeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcC-------CC
Confidence 9999999999888887764 453 689999999999999999999887655444433333222211 11
Q ss_pred CCceEEEEEecCceEEEEEecCCC-CeEE-EEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCce-eEEEecCccccce
Q 008258 274 RPGMLFFIFNTEAIGVLVAHDLKE-GEFI-LQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDI-DVIDIKPWVMHAE 349 (572)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~i~~~~~w~~~~~ 349 (572)
.....+..+.+.....+.+..... ..|. +.+...++. +.....+.+.+.+.+.+.++.....+ .......|++...
T Consensus 198 ~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (405)
T PRK05714 198 HRATAWQRFTDDGPLAFLPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAFEGRLGEVLSADPRLCVPLRQR 277 (405)
T ss_pred CCCEEEEEcCCCCCeEEeeCCCCCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHhCCceecCCccEEeccee
Confidence 223344445555444444433221 1222 111111111 11122344444555544443322222 2222345667777
Q ss_pred ecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHh-cCC--CchhhHhhHHHhhhHHHHHhHHHHHH
Q 008258 350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL-KDI--APASILNTYETERKPIAEFNTALSVQ 426 (572)
Q Consensus 350 ~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~-~g~--~~~~~L~~Y~~eR~~~a~~~~~~s~~ 426 (572)
.+++|. +|||+|+|||||.|+|.+|||+|+||+||.+|+|+|+... .+. +...+|+.|+++|++++..++..+..
T Consensus 278 ~~~~~~--~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~ 355 (405)
T PRK05714 278 HAKRYV--EPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEG 355 (405)
T ss_pred ehhhhc--cCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788997 6999999999999999999999999999999999998765 342 34689999999999999999888876
Q ss_pred HHHHh
Q 008258 427 NFRAA 431 (572)
Q Consensus 427 ~~~~~ 431 (572)
..+.+
T Consensus 356 ~~~~~ 360 (405)
T PRK05714 356 FERLF 360 (405)
T ss_pred HHHHH
Confidence 55444
No 20
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=4.1e-40 Score=347.53 Aligned_cols=341 Identities=20% Similarity=0.313 Sum_probs=231.8
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccce
Q 008258 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKF 118 (572)
Q Consensus 39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~ 118 (572)
|++..+||+||||||+||++|+.|+++|++|+||||.+.+. .+++..++++++++|+++ |+++.+...+.+...+.
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~-~~r~~~l~~~s~~~l~~l-gl~~~~~~~~~~~~~~~-- 78 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYA-DLRTTALLGPSIRFLERL-GLWARLAPHAAPLQSMR-- 78 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCC-CcchhhCcHHHHHHHHHh-CchhhhHhhcceeeEEE--
Confidence 44567899999999999999999999999999999997664 367888999999999999 99999987766554322
Q ss_pred eeeeCCCCCeeee-ecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEE
Q 008258 119 IYCTSVTGPILGS-VDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC 197 (572)
Q Consensus 119 ~~~~~~~G~~~~~-~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v 197 (572)
+ .+..|..+.. ...+...+.. ..+. .+.+++..+++.|.+.+.+.+. +. +++++|
T Consensus 79 -~-~~~~g~~~~~~~~~~~~~~~~--~~~~-g~~i~~~~l~~~L~~~~~~~~~------------------~~-~~~~~v 134 (388)
T PRK07494 79 -I-VDATGRLIRAPEVRFRAAEIG--EDAF-GYNIPNWLLNRALEARVAELPN------------------IT-RFGDEA 134 (388)
T ss_pred -E-EeCCCCCCCCceEEEcHHhcC--CCcc-EEEeEhHHHHHHHHHHHhcCCC------------------cE-EECCee
Confidence 1 1223332210 0000000100 0111 2568899999999999877653 24 889999
Q ss_pred EEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCce
Q 008258 198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277 (572)
Q Consensus 198 ~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (572)
++++++++++++++. +|. +++||+||+|||.+|.+|+.++++..+..+.+..+...+... .+....
T Consensus 135 ~~i~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~-------~~~~~~ 200 (388)
T PRK07494 135 ESVRPREDEVTVTLA---DGT----TLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHS-------RPHQNV 200 (388)
T ss_pred EEEEEcCCeEEEEEC---CCC----EEEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEecc-------CCCCCE
Confidence 999998899887764 443 689999999999999999999988766655444444333221 112233
Q ss_pred EEEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEE-EecCccccceecccccc
Q 008258 278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEKFLC 356 (572)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~-~~~~w~~~~~~a~~~~~ 356 (572)
.+.++.+.+...+.+.+.....+++..+... .......+++.+.+.+.+.+......++.. ....|++....+++|.
T Consensus 201 ~~~~~~~~g~~~~~Pl~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~- 278 (388)
T PRK07494 201 STEFHTEGGPFTQVPLPGRRSSLVWVVRPAE-AERLLALSDAALSAAIEERMQSMLGKLTLEPGRQAWPLSGQVAHRFA- 278 (388)
T ss_pred EEEEeCCCCcEEEEECCCCcEEEEEECCHHH-HHHHHcCCHHHHHHHHHHHHhhhcCCeEEccCCcEeechHHHHHhhc-
Confidence 3344445444333333322222333222110 011223455556665555444332333322 2345777777778887
Q ss_pred cCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHH
Q 008258 357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS 424 (572)
Q Consensus 357 ~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s 424 (572)
.+||+|+|||||.++|++|||||+||+||.+|+|+|.....+.....+|++|+++|+++...++...
T Consensus 279 -~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~ 345 (388)
T PRK07494 279 -AGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPDILSRTASV 345 (388)
T ss_pred -cCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999865555568899999999999987665443
No 21
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=1.9e-39 Score=344.24 Aligned_cols=341 Identities=21% Similarity=0.265 Sum_probs=227.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCC--CCCCeeeeChhHHHHHHhhcchHHHHHhcCCCccccccee
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFS--THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~G--i~v~viEr~~~~~--~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~ 119 (572)
+||+||||||+||++|+.|+++| ++|+||||.+... ..+++..++++++++|+.+ |+++.+...+.+.... .
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~~---~ 77 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEAL-GVWDEIAPEAQPITDM---V 77 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHC-CChhhhhhhcCcccEE---E
Confidence 79999999999999999999995 9999999998643 3479999999999999999 9999998877665332 1
Q ss_pred eeeCCCCCeeee--ecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEE
Q 008258 120 YCTSVTGPILGS--VDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC 197 (572)
Q Consensus 120 ~~~~~~G~~~~~--~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v 197 (572)
+.....+..... .+... .... ..+ ..+.++|..|++.|.+.+.+.|+ ++++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~--~~~~-~~~-~~~~i~r~~l~~~L~~~~~~~gv-------------------~v~~~~~v 134 (403)
T PRK07333 78 ITDSRTSDPVRPVFLTFEG--EVEP-GEP-FAHMVENRVLINALRKRAEALGI-------------------DLREATSV 134 (403)
T ss_pred EEeCCCCCCCccceEEecc--cccC-CCc-cEEEeEhHHHHHHHHHHHHhCCC-------------------EEEcCCEE
Confidence 211111111110 00000 0000 011 12467899999999999988876 89999999
Q ss_pred EEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCce
Q 008258 198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277 (572)
Q Consensus 198 ~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (572)
++++++++++.+++. +|. +++||+||+|||.+|.+|+.+|+...+....+..+....... ......
T Consensus 135 ~~i~~~~~~v~v~~~---~g~----~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 200 (403)
T PRK07333 135 TDFETRDEGVTVTLS---DGS----VLEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHE-------RPHGGR 200 (403)
T ss_pred EEEEEcCCEEEEEEC---CCC----EEEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcC-------CCCCCE
Confidence 999998888877764 453 689999999999999999999887654433332222222111 011122
Q ss_pred EEEEEecCceEEEEEecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCceeEEE-ecCccccceeccccc
Q 008258 278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEKFL 355 (572)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~-~~~w~~~~~~a~~~~ 355 (572)
....+.++....+++.. .+...+.+...+.. ......+.+...+.+.+.++.....+...+ ...|+.....+++|.
T Consensus 201 ~~~~~~~~g~~~~~Pl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (403)
T PRK07333 201 AEEHFLPAGPFAILPLK--GNRSSLVWTERTADAERLVALDDLVFEAELEQRFGHRLGELKVLGKRRAFPLGLTLARSFV 278 (403)
T ss_pred EEEEeCCCCceEEeECC--CCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhhcCceEeccCccEeechhhhhhhcc
Confidence 23334454444444333 23332222211100 011122333344445554444333333322 224566666778886
Q ss_pred ccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcC---CCchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD---IAPASILNTYETERKPIAEFNTALSVQNFR 429 (572)
Q Consensus 356 ~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g---~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~ 429 (572)
.|||+|+|||||.++|++|||+|+||+||.+|+|+|+.+++. .+.+.+|++|+++|++++..++..+....+
T Consensus 279 --~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~ 353 (403)
T PRK07333 279 --APRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNR 353 (403)
T ss_pred --CCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999988742 346899999999999999888776654443
No 22
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=2.3e-39 Score=342.19 Aligned_cols=332 Identities=16% Similarity=0.226 Sum_probs=222.9
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC-----CCCeeeeChhHHHHHHhhcchHHHHHhc-CCCccc
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST-----HPQAHFINNRYALVFRKLDGLAEEIERS-QPPVDL 114 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~-----~~~a~~l~~rt~e~l~~l~Gl~~~l~~~-~~~~~~ 114 (572)
...+||+||||||+|+++|+.|+++|++|+||||.+.+.. ..++..++++++++|+++ |+++.+.+. ..+...
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~~ 82 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRL-GVWPAVRAARAQPYRR 82 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHC-CchhhhhHhhCCcccE
Confidence 4558999999999999999999999999999999875432 235678999999999999 999998763 333322
Q ss_pred ccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEec
Q 008258 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (572)
Q Consensus 115 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g 194 (572)
+ ..+.. ..+..+ .++.. .. ..+...+.+++..|.+.|.+.+.+.|+ +++++
T Consensus 83 ~--~~~~~-~~~~~~-~~~~~---~~---~~~~~~~~v~~~~l~~~L~~~~~~~gv-------------------~i~~~ 133 (392)
T PRK08773 83 M--RVWDA-GGGGEL-GFDAD---TL---GREQLGWIVENDLLVDRLWAALHAAGV-------------------QLHCP 133 (392)
T ss_pred E--EEEeC-CCCceE-Eechh---cc---CCCcCEEEEEhHHHHHHHHHHHHhCCC-------------------EEEcC
Confidence 1 11211 111111 11110 00 011112467889999999999988776 89999
Q ss_pred cEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCC
Q 008258 195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNER 274 (572)
Q Consensus 195 ~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 274 (572)
+++++++++++++++++. +|+ +++||+||+|||.+|.+|+.+|++..+..+.+..+...... + .+.
T Consensus 134 ~~v~~i~~~~~~v~v~~~---~g~----~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~-~------~~~ 199 (392)
T PRK08773 134 ARVVALEQDADRVRLRLD---DGR----RLEAALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDT-E------HPH 199 (392)
T ss_pred CeEEEEEecCCeEEEEEC---CCC----EEEeCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEc-c------CCC
Confidence 999999998888877664 453 68999999999999999999988765443332222222221 1 112
Q ss_pred CceEEEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEE-ecCccccceeccc
Q 008258 275 PGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMHAEVAEK 353 (572)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~-~~~w~~~~~~a~~ 353 (572)
+...+..+.++....+++.+.....+++..|... .+....++.+.+.+.+.+.++.....++... ...|++...++++
T Consensus 200 ~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 278 (392)
T PRK08773 200 QATAWQRFLPTGPLALLPFADGRSSIVWTLPDAE-AERVLALDEAAFSRELTQAFAARLGEVRVASPRTAFPLRRQLVQQ 278 (392)
T ss_pred CCEEEEEeCCCCcEEEEECCCCceEEEEECCHHH-HHHHHcCCHHHHHHHHHHHHhhhhcCeEecCCccEeechhhhhhh
Confidence 3334444555544444444333233444433111 0112234444455555554443333333322 2346666667888
Q ss_pred ccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc---CCCchhhHhhHHHhhhHHHHH
Q 008258 354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK---DIAPASILNTYETERKPIAEF 419 (572)
Q Consensus 354 ~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~---g~~~~~~L~~Y~~eR~~~a~~ 419 (572)
|. +|||+|+|||||.++|++|||+|+||+||.+|+++|..+++ +.....+|++|+++|+++...
T Consensus 279 ~~--~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~ 345 (392)
T PRK08773 279 YV--SGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTV 345 (392)
T ss_pred hc--CCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 87 69999999999999999999999999999999999998763 334568999999999999653
No 23
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=3.3e-39 Score=341.38 Aligned_cols=345 Identities=17% Similarity=0.196 Sum_probs=231.9
Q ss_pred CCCCccCCEEEECCCHHHHHHHHHHHhCC----CCEEEEcCCCCC--CCCCCeeeeChhHHHHHHhhcchHHHHHhcCCC
Q 008258 38 VSNEAVVPVLIVGAGPVGLVLSILLTKLG----IKCSVLEKNKAF--STHPQAHFINNRYALVFRKLDGLAEEIERSQPP 111 (572)
Q Consensus 38 ~~~~~~~dVlIVGaGpaGL~~A~~La~~G----i~v~viEr~~~~--~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~ 111 (572)
+|....+||+||||||+|+++|+.|+++| ++|+|+|+.+.+ ...+++..++++++++|+++ |+++. ...+
T Consensus 6 ~~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~l-g~~~~---~~~~ 81 (398)
T PRK06996 6 SMAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETL-GAWPA---DATP 81 (398)
T ss_pred hccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhC-CCchh---cCCc
Confidence 35567789999999999999999999997 469999998644 33568999999999999999 99886 2333
Q ss_pred cccccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceE
Q 008258 112 VDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREI 191 (572)
Q Consensus 112 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i 191 (572)
..... ++.....|....... ++ ..+...+.++|..|++.|.+.+.+.|+ ++
T Consensus 82 ~~~~~--~~~~~~~g~~~~~~~-----~~---~~~~~g~~v~r~~l~~~L~~~~~~~g~-------------------~~ 132 (398)
T PRK06996 82 IEHIH--VSQRGHFGRTLIDRD-----DH---DVPALGYVVRYGSLVAALARAVRGTPV-------------------RW 132 (398)
T ss_pred ccEEE--EecCCCCceEEeccc-----cc---CCCcCEEEEEhHHHHHHHHHHHHhCCC-------------------EE
Confidence 32111 111111222221111 11 112224578899999999999988876 88
Q ss_pred EeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCC-ChhhhhhcCCccccccCcceEEEEEEecCcccccc
Q 008258 192 LMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA-GSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYL 270 (572)
Q Consensus 192 ~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~-~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~ 270 (572)
+++++++++++++++|++++. ++++ +++++||+||||||. +|.+|+.+++...+..+.+..+...+...
T Consensus 133 ~~~~~v~~~~~~~~~v~v~~~---~~~g-~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~------ 202 (398)
T PRK06996 133 LTSTTAHAPAQDADGVTLALG---TPQG-ARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVS------ 202 (398)
T ss_pred EcCCeeeeeeecCCeEEEEEC---CCCc-ceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEcc------
Confidence 999999999999999888765 3322 247999999999997 57889998887766655444333322211
Q ss_pred ccCCCceEEEEEecCceEEEEEecCCCC-eEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCceeEEE-ecCcccc
Q 008258 271 LNERPGMLFFIFNTEAIGVLVAHDLKEG-EFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVID-IKPWVMH 347 (572)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~-~~~w~~~ 347 (572)
...+...+..+.+.+...+.+.+.... .+.+.+...++. .....++.+...+.+.+.++.....+.... ...|++.
T Consensus 203 -~~~~~~~~~~~~~~G~~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 281 (398)
T PRK06996 203 -APRPGWAWERFTHEGPLALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGAAFGTRMGRFTRIAGRHAFPLG 281 (398)
T ss_pred -CCCCCEEEEEecCCCCeEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHhccccCceEEecceEEEeee
Confidence 112333333444544433333332211 133322211111 112344555666667666665444443322 2245566
Q ss_pred ceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHH
Q 008258 348 AEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN 427 (572)
Q Consensus 348 ~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~ 427 (572)
...+++|. +|||+|+|||||.++|.+|||+|+||+||.+|||+|.. .+ ..+.+|++|+++|++++..++..+...
T Consensus 282 ~~~~~~~~--~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~--~~-~~~~~L~~Y~~~R~~~~~~~~~~s~~l 356 (398)
T PRK06996 282 LNAARTLV--NGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSD--HG-ATPLALATFAARRALDRRVTIGATDLL 356 (398)
T ss_pred ccccccee--cCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHh--cC-CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777887 69999999999999999999999999999999999975 23 346789999999999999888887765
Q ss_pred HHHh
Q 008258 428 FRAA 431 (572)
Q Consensus 428 ~~~~ 431 (572)
.+.+
T Consensus 357 ~~~~ 360 (398)
T PRK06996 357 PRLF 360 (398)
T ss_pred HHHH
Confidence 5443
No 24
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=2.7e-39 Score=340.68 Aligned_cols=339 Identities=22% Similarity=0.302 Sum_probs=227.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCC----CCeeeeChhHHHHHHhhcchHHHHHhcCCCccccccee
Q 008258 45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTH----PQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~~~~~----~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~ 119 (572)
||+||||||+||++|+.|+++| ++|+|+||.+.+... +++..++++++++|+++ |+.+++...+.+...+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~~~~~~~~~-- 77 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKL-GLWPKLAPFATPILDIHV-- 77 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHC-CChhhhHhhcCccceEEE--
Confidence 7999999999999999999999 999999999877554 57899999999999999 999998877655432211
Q ss_pred eeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhc-CceeeccCCcccccccccccceEEeccEEE
Q 008258 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECV 198 (572)
Q Consensus 120 ~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~ 198 (572)
......+... .. ..++ ..+...+.++|..|++.|.+.+.+. |+ +++++++++
T Consensus 78 ~~~~~~~~~~--~~---~~~~---~~~~~~~~i~r~~l~~~L~~~~~~~~gv-------------------~~~~~~~v~ 130 (382)
T TIGR01984 78 SDQGHFGATH--LR---ASEF---GLPALGYVVELADLGQALLSRLALLTNI-------------------QLYCPARYK 130 (382)
T ss_pred EcCCCCceEE--ec---hhhc---CCCccEEEEEcHHHHHHHHHHHHhCCCc-------------------EEEcCCeEE
Confidence 1000111111 10 0011 1122235678999999999999874 65 899999999
Q ss_pred EEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceE
Q 008258 199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML 278 (572)
Q Consensus 199 ~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (572)
+++++++++++++. +|. +++||+||+|||.+|.||+.++++.......+..+...+.... ......
T Consensus 131 ~i~~~~~~~~v~~~---~g~----~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 196 (382)
T TIGR01984 131 EIIRNQDYVRVTLD---NGQ----QLRAKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQ-------PHQGCA 196 (382)
T ss_pred EEEEcCCeEEEEEC---CCC----EEEeeEEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecC-------CCCCEE
Confidence 99988888877764 453 6899999999999999999998765544322222222221110 111222
Q ss_pred EEEEecCceEEEEEecCCCC-eEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCceeE-EEecCccccceeccccc
Q 008258 279 FFIFNTEAIGVLVAHDLKEG-EFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDV-IDIKPWVMHAEVAEKFL 355 (572)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i-~~~~~w~~~~~~a~~~~ 355 (572)
+..+.++....+++.+ .+ .+.+.+...++. +...+.+.+.+.+.+.+.+++....+.. .....|++....+++|.
T Consensus 197 ~~~~~~~g~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (382)
T TIGR01984 197 FERFTPHGPLALLPLK--DNYRSSLVWCLPSKQADTIANLPDAEFLAELQQAFGWRLGKITQVGERKTYPLKLRIAETHV 274 (382)
T ss_pred EEeeCCCCCeEECcCC--CCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCccEeecchhhhhhee
Confidence 2233333333333332 22 333322211110 1112344555555555555543323222 12345666666777786
Q ss_pred ccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (572)
Q Consensus 356 ~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~ 431 (572)
.|||+|+|||||.++|++|||+|+||+||.+|+|+|+.+..+...+.+|+.|+++|+++...++..+....+.+
T Consensus 275 --~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~ 348 (382)
T TIGR01984 275 --HPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFDQFITIGLTDGLNRLF 348 (382)
T ss_pred --cCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999998754445678999999999999998888776554433
No 25
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=3.1e-39 Score=341.95 Aligned_cols=339 Identities=17% Similarity=0.176 Sum_probs=215.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
-+|+||||||+||++|++|+++|++|+|+||.+.+...++++.++++++++|+++ |+++++...+.+... +.+...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~-Gl~~~l~~~~~~~~~---~~~~~g 78 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERL-GVADRLSGTGVTPKA---LYLMDG 78 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHC-CChHHHhhcccCcce---EEEecC
Confidence 5899999999999999999999999999999998888899999999999999999 999999876654321 112111
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
..+......+... .........+..++|..|+++|++.+.+.+ ++++++++++++++++
T Consensus 79 ~~~~~~~~~~~~~---~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~------------------~i~v~~~~~v~~~~~~ 137 (400)
T PRK06475 79 RKARPLLAMQLGD---LARKRWHHPYIVCHRADLQSALLDACRNNP------------------GIEIKLGAEMTSQRQT 137 (400)
T ss_pred CCcceEEEecchh---hhhhcCCCCceeECHHHHHHHHHHHHHhcC------------------CcEEEECCEEEEEecC
Confidence 1222111111100 000011223456899999999999986642 2389999999999998
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCcc---ccccCcceEEEEEEecCccccccc--cCCCceE
Q 008258 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDL---VGEKDLQKLVSVHFLSKDLGDYLL--NERPGML 278 (572)
Q Consensus 204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~---~g~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ 278 (572)
++++++++...+++ .++++|+||||||++|.||++++... .|...++..+.. ..+..... .......
T Consensus 138 ~~~v~v~~~~~~~~----~~~~adlvIgADG~~S~vR~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 209 (400)
T PRK06475 138 GNSITATIIRTNSV----ETVSAAYLIACDGVWSMLRAKAGFSKARFSGHIAWRTTLAA----DALPASFLSAMPEHKAV 209 (400)
T ss_pred CCceEEEEEeCCCC----cEEecCEEEECCCccHhHHhhcCCCCCCcCCceEEEEEeeh----hhcchhhhhhcccCCce
Confidence 88988887632222 26899999999999999999986532 122222222211 11111000 0112223
Q ss_pred EEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCC----CHHHHHHHHHHHhCCCCCc---eeE-EEecCcccccee
Q 008258 279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDF----SPEICEKLIFKLVGWELSD---IDV-IDIKPWVMHAEV 350 (572)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~---~~i-~~~~~w~~~~~~ 350 (572)
..++.++...+..+.... ..+.+.. +.++......+ +.+.+.+.. .++.+.- ++. .....|++....
T Consensus 210 ~~~~g~~~~~~~~p~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~l~~~~ 284 (400)
T PRK06475 210 SAWLGNKAHFIAYPVKGG-KFFNFVA-ITGGENPGEVWSKTGDKAHLKSIY---ADWNKPVLQILAAIDEWTYWPLFEMA 284 (400)
T ss_pred EEEEcCCCEEEEEEccCC-cEEEEEE-EEcCCCCcccCCCCCCHHHHHHHh---cCCChHHHHHHhcCCceeECcCcccC
Confidence 334455544333333211 2232221 11111111111 222222222 2222210 111 112345555444
Q ss_pred cccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHH
Q 008258 351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSV 425 (572)
Q Consensus 351 a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~ 425 (572)
..+|. .+|||+|+|||||.++|+.|||+|+||+||.+|+++|.. ...+.+|+.|+++|+|+++.++..+.
T Consensus 285 ~~~~~-~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~----~~~~~aL~~Ye~~R~~r~~~~~~~s~ 354 (400)
T PRK06475 285 DAQFV-GPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDS----DDQSAGLKRFDSVRKERIAAVAKRGQ 354 (400)
T ss_pred CCcce-ecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45553 269999999999999999999999999999999999963 23568999999999999999888774
No 26
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=1e-38 Score=337.30 Aligned_cols=337 Identities=18% Similarity=0.227 Sum_probs=222.6
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC------CCCCeeeeChhHHHHHHhhcchHHHHHhc-CCCc
Q 008258 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS------THPQAHFINNRYALVFRKLDGLAEEIERS-QPPV 112 (572)
Q Consensus 40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~------~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~-~~~~ 112 (572)
....+||+||||||+|+++|+.|++.|++|+|||+.+.+. ...++..++++++++|+.+ |+++.+... ..+.
T Consensus 2 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~ 80 (391)
T PRK08020 2 TNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGL-GVWDAVQAMRSHPY 80 (391)
T ss_pred CcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHc-CChhhhhhhhCccc
Confidence 3566899999999999999999999999999999986432 1236688999999999999 999988763 2332
Q ss_pred ccccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhc-CceeeccCCcccccccccccceE
Q 008258 113 DLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREI 191 (572)
Q Consensus 113 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i 191 (572)
..+.. .....+....... +. ..+...+.++|..|++.|.+.+.+. |+ ++
T Consensus 81 ~~~~~---~~~~~~~~~~~~~-----~~---~~~~~g~~i~r~~l~~~L~~~~~~~~gv-------------------~i 130 (391)
T PRK08020 81 RRLET---WEWETAHVVFDAA-----EL---KLPELGYMVENRVLQLALWQALEAHPNV-------------------TL 130 (391)
T ss_pred ceEEE---EeCCCCeEEeccc-----cc---CCCccEEEEEcHHHHHHHHHHHHcCCCc-------------------EE
Confidence 22111 1111222211100 01 1122234688999999999988765 54 88
Q ss_pred EeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccc
Q 008258 192 LMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLL 271 (572)
Q Consensus 192 ~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~ 271 (572)
++++++++++++++++++++. +|+ +++||+||+|||++|.||+.++++..+..+.+..........
T Consensus 131 ~~~~~v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~------- 196 (391)
T PRK08020 131 RCPASLQALQRDDDGWELTLA---DGE----EIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCE------- 196 (391)
T ss_pred EcCCeeEEEEEcCCeEEEEEC---CCC----EEEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEec-------
Confidence 999999999988888777664 443 689999999999999999999887665544443333322211
Q ss_pred cCCCceEEEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceec
Q 008258 272 NERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVA 351 (572)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a 351 (572)
.......+..+.+.....+++........++..+ ..........+.+.+.+.+.+.++.....+.......|++....+
T Consensus 197 ~~~~~~~~~~~~~~g~~~~~p~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pl~~~~~ 275 (391)
T PRK08020 197 NPPGDSTWQQFTPSGPRAFLPLFDNWASLVWYDS-PARIRQLQAMSMAQLQQEIAAHFPARLGAVTPVAAGAFPLTRRHA 275 (391)
T ss_pred CCCCCEEEEEEcCCCCEEEeECCCCcEEEEEECC-HHHHHHHHCCCHHHHHHHHHHHhhhhccceEeccccEeecceeeh
Confidence 1112223333434332333333211111222111 000001122344555555554444333334444455677777778
Q ss_pred ccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc-C--CCchhhHhhHHHhhhHHHHHhHHHH
Q 008258 352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-D--IAPASILNTYETERKPIAEFNTALS 424 (572)
Q Consensus 352 ~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~-g--~~~~~~L~~Y~~eR~~~a~~~~~~s 424 (572)
++|. ++||+|+|||||.++|++|||+|+||+||.+|+++|+...+ + .....+|++|+++|++....+...+
T Consensus 276 ~~~~--~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~ 349 (391)
T PRK08020 276 LQYV--QPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGM 349 (391)
T ss_pred hhhc--cCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887 69999999999999999999999999999999999998753 2 2356899999999999876554433
No 27
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-38 Score=335.69 Aligned_cols=335 Identities=17% Similarity=0.216 Sum_probs=218.9
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
.||+||||||+||++|+.|+++|++|+|+||.+.....++++.++++++++|+++ |+++++.+.+.+...+. . .+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~l-Gl~~~l~~~~~~~~~~~---~-~~ 75 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRM-GITDQLREAGYQIEHVR---S-VD 75 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHc-CCHHHHHhccCCccceE---E-Ec
Confidence 3899999999999999999999999999999988877778888999999999999 99999988776654322 1 23
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
.+|..+...+.. .+.. ..+.....++|..|.+.|++.+.. ++ +++++++|++++++
T Consensus 76 ~~g~~~~~~~~~---~~~~-~~g~~~~~i~r~~l~~~L~~~~~~-~v-------------------~i~~~~~v~~i~~~ 131 (391)
T PRK07588 76 PTGRRKADLNVD---SFRR-MVGDDFTSLPRGDLAAAIYTAIDG-QV-------------------ETIFDDSIATIDEH 131 (391)
T ss_pred CCCCEEEEecHH---Hccc-cCCCceEEEEHHHHHHHHHHhhhc-Ce-------------------EEEeCCEEeEEEEC
Confidence 456555443321 1110 112234578899999999886533 44 89999999999999
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEE-E
Q 008258 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI-F 282 (572)
Q Consensus 204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~ 282 (572)
++++++++. +|+ ++++|+||||||++|.||+.+.........+.......+.... . ...+...+.. .
T Consensus 132 ~~~v~v~~~---~g~----~~~~d~vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~~~~~~~~~ 199 (391)
T PRK07588 132 RDGVRVTFE---RGT----PRDFDLVIGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVDG---Y--RPRDERTYVLYN 199 (391)
T ss_pred CCeEEEEEC---CCC----EEEeCEEEECCCCCccchhhccCCccceEEEcCcEEEEEEcCC---C--CCCCCceEEEEe
Confidence 999887765 554 5789999999999999999763221111112221111111111 1 1112222222 2
Q ss_pred ecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCC-CCC--c-eeEE-EecCc---cccceecccc
Q 008258 283 NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGW-ELS--D-IDVI-DIKPW---VMHAEVAEKF 354 (572)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~--~-~~i~-~~~~w---~~~~~~a~~~ 354 (572)
.++......+. ..+.+.+.+....+. ....++.+...+.+++.++. ... . ++.. ....+ ......+++|
T Consensus 200 ~~g~~~~~~p~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 276 (391)
T PRK07588 200 EVGRQVARVAL--RGDRTLFLFIFRAEH-DNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRW 276 (391)
T ss_pred CCCCEEEEEec--CCCCeEEEEEEEcCC-ccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCcc
Confidence 34332233332 234433333222221 12334555555556555432 110 1 1111 11111 2233455677
Q ss_pred cccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHH
Q 008258 355 LCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQ 426 (572)
Q Consensus 355 ~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~ 426 (572)
. +|||+|+|||||.|+|+.|||+|+||+||.+|+++|+... ...+.+|+.|+++|+|++..++..+..
T Consensus 277 ~--~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~--~~~~~al~~Y~~~R~~~~~~~~~~~~~ 344 (391)
T PRK07588 277 S--RGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAG--GDHRRAFDAYEKRLRPFIAGKQAAAAK 344 (391)
T ss_pred c--cCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 6 6999999999999999999999999999999999998632 245789999999999999988877653
No 28
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=100.00 E-value=3.7e-38 Score=332.03 Aligned_cols=338 Identities=20% Similarity=0.232 Sum_probs=213.2
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC--CCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS--THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~--~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (572)
.+||+||||||+||++|+.|++.|++|+||||.+.+. ...++..++++++++|+++ |+++++...+.+...+..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~l-Gl~~~l~~~~~~~~~~~~--- 77 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREA-GVDERMDREGLVHEGTEI--- 77 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHC-CChHHHHhcCceecceEE---
Confidence 3799999999999999999999999999999998642 2457778999999999999 999999887765533221
Q ss_pred eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (572)
Q Consensus 121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v 200 (572)
. + .+ .....+.... ........++|..|.+.|++.+.+.|+ .++++++++.+
T Consensus 78 ~-~-~~-~~~~~~~~~~------~~~~~~~~~~~~~l~~~L~~~~~~~g~-------------------~~~~~~~~v~~ 129 (390)
T TIGR02360 78 A-F-DG-QRFRIDLKAL------TGGKTVMVYGQTEVTRDLMEAREAAGL-------------------TTVYDADDVRL 129 (390)
T ss_pred e-e-CC-EEEEEecccc------CCCceEEEeCHHHHHHHHHHHHHhcCC-------------------eEEEeeeeEEE
Confidence 1 1 12 1222221100 011112234678889999998877765 78899988887
Q ss_pred ee-eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCcc----ccccCcceEEEEEEecCccccccccCCC
Q 008258 201 SA-TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDL----VGEKDLQKLVSVHFLSKDLGDYLLNERP 275 (572)
Q Consensus 201 ~~-~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~----~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (572)
.+ +++.+.|++. .+|+ +.+++||+||||||++|.||++++... .+... ..+..+..... ..+
T Consensus 130 ~~~~~~~~~V~~~--~~g~--~~~i~adlvIGADG~~S~VR~~l~~~~~~~~~~~~~-~~~~~l~~~~~--------~~~ 196 (390)
T TIGR02360 130 HDLAGDRPYVTFE--RDGE--RHRLDCDFIAGCDGFHGVSRASIPAEVLKEFERVYP-FGWLGILSETP--------PVS 196 (390)
T ss_pred EecCCCccEEEEE--ECCe--EEEEEeCEEEECCCCchhhHHhcCcccceeeeccCC-cceEEEecCCC--------CCC
Confidence 65 5566677764 2442 347899999999999999999985432 11110 01111110000 011
Q ss_pred ceEEEEEecCceEEEEEec-CCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEE----ecCcccccee
Q 008258 276 GMLFFIFNTEAIGVLVAHD-LKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID----IKPWVMHAEV 350 (572)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~----~~~w~~~~~~ 350 (572)
....+ ..++....+.+.. .....|.+.++. ......++.+...+.+.+.+........... ....++....
T Consensus 197 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 272 (390)
T TIGR02360 197 HELIY-SNHERGFALCSMRSATRSRYYVQVPL---TDKVEDWSDDRFWAELKRRLPSEAAERLVTGPSIEKSIAPLRSFV 272 (390)
T ss_pred CceEE-EeCCCceEEEeccCCCcceEEEEcCC---CCChhhCChhHHHHHHHHhcCchhhhhhccCCccceeeeeHHhhc
Confidence 11112 1222222222221 111234443331 1123344444444444444332111110000 0111233445
Q ss_pred cccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHH
Q 008258 351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA 430 (572)
Q Consensus 351 a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~ 430 (572)
+++|. .|||+|+|||||.++|+.|||+|+||+||.+|+++|..... .+.+.+|+.|+++|++++..+++.|....+.
T Consensus 273 ~~~~~--~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~-~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~ 349 (390)
T TIGR02360 273 CEPMQ--YGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQ-EGSSAGIEGYSARALARVWKAERFSWWMTSL 349 (390)
T ss_pred cccCc--cCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66775 69999999999999999999999999999999999987543 2357899999999999999999888765554
Q ss_pred hc
Q 008258 431 AM 432 (572)
Q Consensus 431 ~~ 432 (572)
..
T Consensus 350 ~~ 351 (390)
T TIGR02360 350 LH 351 (390)
T ss_pred hc
Confidence 43
No 29
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=1.8e-38 Score=334.51 Aligned_cols=340 Identities=21% Similarity=0.281 Sum_probs=228.6
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC-----CCeeeeChhHHHHHHhhcchHHHHHh-cCCCcccccce
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-----PQAHFINNRYALVFRKLDGLAEEIER-SQPPVDLWRKF 118 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~-----~~a~~l~~rt~e~l~~l~Gl~~~l~~-~~~~~~~~~~~ 118 (572)
||+||||||+||++|+.|+++|++|+|+||++.+... ++++.++++++++|+++ |+++++.+ .+.+.....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-Gl~~~~~~~~~~~~~~~~-- 77 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKL-GVWDKIEPDRAQPIRDIH-- 77 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHC-CchhhhhhhcCCCceEEE--
Confidence 7999999999999999999999999999999886433 47899999999999999 99999887 555543221
Q ss_pred eeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEE
Q 008258 119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV 198 (572)
Q Consensus 119 ~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~ 198 (572)
.+ +..+........ ... ..+...+.++|..|++.|++.+.+.| +++++++++|+
T Consensus 78 ~~--~~~~~~~~~~~~---~~~---~~~~~~~~i~r~~l~~~L~~~~~~~~------------------~~~v~~~~~v~ 131 (385)
T TIGR01988 78 VS--DGGSFGALHFDA---DEI---GLEALGYVVENRVLQQALWERLQEYP------------------NVTLLCPARVV 131 (385)
T ss_pred EE--eCCCCceEEech---hhc---CCCccEEEEEcHHHHHHHHHHHHhCC------------------CcEEecCCeEE
Confidence 11 112221111110 000 11222356889999999999998876 13899999999
Q ss_pred EEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceE
Q 008258 199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGML 278 (572)
Q Consensus 199 ~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (572)
+++++++++++++. +|. ++++|+||+|||++|.+|++++++..........+...+.... ..+...
T Consensus 132 ~i~~~~~~~~v~~~---~g~----~~~~~~vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 197 (385)
T TIGR01988 132 ELPRHSDHVELTLD---DGQ----QLRARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHER-------PHQGTA 197 (385)
T ss_pred EEEecCCeeEEEEC---CCC----EEEeeEEEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecC-------CCCCEE
Confidence 99988888877654 553 5899999999999999999998765543332222222222111 112222
Q ss_pred EEEEecCceEEEEEecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCceeE-EEecCccccceecccccc
Q 008258 279 FFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDV-IDIKPWVMHAEVAEKFLC 356 (572)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i-~~~~~w~~~~~~a~~~~~ 356 (572)
+..+.++....+++.+ .+.+.+.+...+.. .....++++.+.+.+.+.++.....+.. .....|++....+++|.
T Consensus 198 ~~~~~~~g~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 274 (385)
T TIGR01988 198 WERFTPTGPLALLPLP--DNRSSLVWTLPPEEAERLLALSDEEFLAELQRAFGSRLGAITLVGERHAFPLSLTHAKRYV- 274 (385)
T ss_pred EEEecCCCCEEEeECC--CCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCceEeccCcceeechhhhhhhee-
Confidence 2233344333333333 23333333221111 1112345555555565554322222222 22345566566677776
Q ss_pred cCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc-C--CCchhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258 357 CYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-D--IAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (572)
Q Consensus 357 ~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~-g--~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~ 431 (572)
.+||+|+|||||.++|++|||+|+||+||.+|+++|...++ + ...+.+|+.|+++|+++++.++..+....+.+
T Consensus 275 -~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~ 351 (385)
T TIGR01988 275 -APRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLF 351 (385)
T ss_pred -cCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999998764 2 23478999999999999999888876555433
No 30
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=3.8e-38 Score=332.62 Aligned_cols=338 Identities=19% Similarity=0.283 Sum_probs=227.4
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC-----CCCeeeeChhHHHHHHhhcchHHHHHhcC-CCccccc
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST-----HPQAHFINNRYALVFRKLDGLAEEIERSQ-PPVDLWR 116 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~-----~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~-~~~~~~~ 116 (572)
++||+||||||+||++|+.|++.|++|+|+||.+.+.. .++++.++++++++|+.+ |+++++.... .+...+.
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERL-GVWQALDAARLAPVYDMR 83 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHc-CchhhhhhhcCCcceEEE
Confidence 57999999999999999999999999999999988654 346689999999999999 9999876432 2332221
Q ss_pred ceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcC-ceeeccCCcccccccccccceEEecc
Q 008258 117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLN-FKICTSEGTEGLHNHLLQGREILMGH 195 (572)
Q Consensus 117 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~i~~g~ 195 (572)
......+... .. .+. ...|...+.++|..|++.|.+.+.+.| + +++ ++
T Consensus 84 ---~~~~~~~~~~--~~-----~~~-~~~~~~~~~i~~~~l~~~L~~~~~~~~~v-------------------~~~-~~ 132 (388)
T PRK07608 84 ---VFGDAHARLH--FS-----AYQ-AGVPQLAWIVESSLIERALWAALRFQPNL-------------------TWF-PA 132 (388)
T ss_pred ---EEECCCceeE--ee-----ccc-cCCCCCEEEEEhHHHHHHHHHHHHhCCCc-------------------EEE-cc
Confidence 1111111111 00 010 012333456789999999999998876 4 777 89
Q ss_pred EEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCC
Q 008258 196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP 275 (572)
Q Consensus 196 ~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (572)
++++++++++++++++. +|. +++||+||+|||++|.+|+.++.........+..+...+.... ...
T Consensus 133 ~v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 198 (388)
T PRK07608 133 RAQGLEVDPDAATLTLA---DGQ----VLRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAER-------PHR 198 (388)
T ss_pred eeEEEEecCCeEEEEEC---CCC----EEEeeEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecC-------CCC
Confidence 99999988888877664 443 6899999999999999999998876554443333333333211 112
Q ss_pred ceEEEEEecCceEEEEEecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCceeEE-EecCccccceeccc
Q 008258 276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDVI-DIKPWVMHAEVAEK 353 (572)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~-~~~~w~~~~~~a~~ 353 (572)
...+.++.++...++++.+ .+++.+.+....+. ......+++.+.+.+.+........+... ....|++.....+.
T Consensus 199 ~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (388)
T PRK07608 199 GTAYQWFRDDGILALLPLP--DGHVSMVWSARTAHADELLALSPEALAARVERASGGRLGRLECVTPAAGFPLRLQRVDR 276 (388)
T ss_pred CEEEEEecCCCCEEEeECC--CCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHhcCCceecCCcceeecchhhhhh
Confidence 2334444555444444433 34443322211110 11122355566666665543222223222 22345666556677
Q ss_pred ccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHh--cCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHH
Q 008258 354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL--KDIAPASILNTYETERKPIAEFNTALSVQNFRA 430 (572)
Q Consensus 354 ~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~--~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~ 430 (572)
|. ++||+|+|||||.++|++|||+|+||+||.+|||+|.... .+....++|++|+++|+++...+...+....+.
T Consensus 277 ~~--~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~ 353 (388)
T PRK07608 277 LV--APRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARREDILALQVATDGLQRL 353 (388)
T ss_pred hh--cCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 6999999999999999999999999999999999998764 233446899999999999999887776654443
No 31
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=2.8e-38 Score=331.88 Aligned_cols=328 Identities=19% Similarity=0.217 Sum_probs=213.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
++|+||||||+||++|+.|++.|++|+|+||++.+...++++.++++++++|+.+ |+.+.+...+.+..... + .+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~-gl~~~~~~~~~~~~~~~---~-~~ 75 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNH-DLAKGIKNAGQILSTMN---L-LD 75 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhc-ChHHHHHhcCCccccee---E-Ec
Confidence 3799999999999999999999999999999999888889999999999999999 99999887765543322 1 23
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
.+|+.+..... . . ......++|..|.++|.+.+.. .++++++++++++++
T Consensus 76 ~~g~~~~~~~~------~--~-~~~~~~i~R~~l~~~L~~~~~~---------------------~~i~~~~~v~~i~~~ 125 (373)
T PRK06753 76 DKGTLLNKVKL------K--S-NTLNVTLHRQTLIDIIKSYVKE---------------------DAIFTGKEVTKIENE 125 (373)
T ss_pred CCCCEEeeccc------c--c-CCccccccHHHHHHHHHHhCCC---------------------ceEEECCEEEEEEec
Confidence 35554433221 0 0 1123568999999999887632 378999999999998
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEEEe
Q 008258 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN 283 (572)
Q Consensus 204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 283 (572)
++++++++. +|+ ++++|+||||||.+|.||+.++..... .+.....+........ . . .+.....++.
T Consensus 126 ~~~v~v~~~---~g~----~~~~~~vigadG~~S~vR~~~~~~~~~--~~~g~~~~~~~~~~~~-~--~-~~~~~~~~~~ 192 (373)
T PRK06753 126 TDKVTIHFA---DGE----SEAFDLCIGADGIHSKVRQSVNADSKV--RYQGYTCFRGLIDDID-L--K-LPDCAKEYWG 192 (373)
T ss_pred CCcEEEEEC---CCC----EEecCEEEECCCcchHHHHHhCCCCCc--eEcceEEEEEEecccc-c--c-CccceEEEEc
Confidence 888888765 553 579999999999999999998753211 1111111111111100 0 0 1111222333
Q ss_pred cCceEEEEEecCCCCeEEEEeecCC--CCCCCCCCCHHHHHHHHHHH-------hCCCCCceeEEEecCccc-cceeccc
Q 008258 284 TEAIGVLVAHDLKEGEFILQVPFYP--PQQNLEDFSPEICEKLIFKL-------VGWELSDIDVIDIKPWVM-HAEVAEK 353 (572)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~i~~~~~w~~-~~~~a~~ 353 (572)
++....+.+. ..+...+.+.... ......+.+.+.+.+.+..+ +.... ...+ ..|.. .....++
T Consensus 193 ~~g~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~ 266 (373)
T PRK06753 193 TKGRFGIVPL--LNNQAYWFITINAKERDPKYSSFGKPHLQAYFNHYPNEVREILDKQS-ETGI---LHHDIYDLKPLKS 266 (373)
T ss_pred CCCEEEEEEc--CCCeEEEEEEeccccCCcccccccHHHHHHHHhcCChHHHHHHHhCC-cccc---eeecccccccccc
Confidence 3332223322 2233233222211 11122233333333332211 11000 0000 11111 1123456
Q ss_pred ccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258 354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (572)
Q Consensus 354 ~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~ 431 (572)
|. .|||+|+|||||.|+|+.|||+|+||+||.+|++.|.. .+.+.+|+.|+++|++++..+++.+....+..
T Consensus 267 ~~--~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~----~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~ 338 (373)
T PRK06753 267 FV--YGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNA----YDFEKALQRYDKIRVKHTAKVIKRSRKIGKIA 338 (373)
T ss_pred cc--CCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhh----ccHHHHHHHHHHHhhHHHHHHHHHHHHHhHHH
Confidence 75 59999999999999999999999999999999999953 35688999999999999999998887655433
No 32
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=330.87 Aligned_cols=342 Identities=20% Similarity=0.225 Sum_probs=217.6
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
+||+||||||+||++|+.|+++|++|+||||++.+.+.+.+..++++++++|+++ |+++++...+.+...+. + .+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~l-gl~~~l~~~~~~~~~~~---~-~~ 75 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAEL-GLLDALDAIGIRTRELA---Y-FN 75 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHC-CCHHHHHhhCCCCcceE---E-Ec
Confidence 4899999999999999999999999999999998887888999999999999999 99999988766553332 2 12
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHh-cCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~ 202 (572)
..|+.+......... ....+.+.++|..|+++|++.+.+ .|. ..|+++++|+++++
T Consensus 76 ~~g~~~~~~~~~~~~-----~~~~~~~~i~R~~l~~~L~~~~~~~~g~------------------~~i~~~~~v~~~~~ 132 (413)
T PRK07538 76 RHGQRIWSEPRGLAA-----GYDWPQYSIHRGELQMLLLDAVRERLGP------------------DAVRTGHRVVGFEQ 132 (413)
T ss_pred CCCCEEeeccCCccc-----CCCCceEEEEHHHHHHHHHHHHHhhcCC------------------cEEEcCCEEEEEEe
Confidence 345544321110000 011223568899999999998865 343 36999999999999
Q ss_pred eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEEE
Q 008258 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282 (572)
Q Consensus 203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 282 (572)
+++++.+.+....+| +.++++||+||||||++|.||++++... +...+.+.+...... +...+ ..+..+.+.
T Consensus 133 ~~~~~~~~~~~~~~g--~~~~~~adlvIgADG~~S~vR~~l~~~~-~~~~~~g~~~~~~~~-~~~~~----~~~~~~~~~ 204 (413)
T PRK07538 133 DADVTVVFLGDRAGG--DLVSVRGDVLIGADGIHSAVRAQLYPDE-GPPRWNGVMMWRGVT-EAPPF----LTGRSMVMA 204 (413)
T ss_pred cCCceEEEEeccCCC--ccceEEeeEEEECCCCCHHHhhhhcCCC-CCCcccceEEEEEee-cCccc----cCCCcEEEE
Confidence 888877777632222 3457999999999999999999986332 122222222111111 11111 011111122
Q ss_pred e-cCceEEEEEecCC-----CCeEEEEeecCCCC---CCCCCCCH-HHHHHHHHHHhCCCCCce---eE----EEecCcc
Q 008258 283 N-TEAIGVLVAHDLK-----EGEFILQVPFYPPQ---QNLEDFSP-EICEKLIFKLVGWELSDI---DV----IDIKPWV 345 (572)
Q Consensus 283 ~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~l~~~~~~~~~~~---~i----~~~~~w~ 345 (572)
. ++...++.+.... ...+.|.++...+. .....++. ....+++..+.++..... ++ .....|+
T Consensus 205 g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~p 284 (413)
T PRK07538 205 GHLDGKLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAEAIYEYP 284 (413)
T ss_pred cCCCCEEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCcceeecc
Confidence 1 1222222221110 02344444432221 11122221 122333333333322100 10 1122344
Q ss_pred ccc-eecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHH
Q 008258 346 MHA-EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS 424 (572)
Q Consensus 346 ~~~-~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s 424 (572)
+.. ...++|. .|||+|+|||||.|+|++|||+|+||+||.+|+++|+.. ...+.+|+.|+++|+|++..++..+
T Consensus 285 ~~~~~~~~~w~--~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~---~~~~~aL~~Ye~~R~~~~~~~~~~s 359 (413)
T PRK07538 285 MVDRDPLPRWT--RGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH---GDPEAALAAYEAERRPATAQIVLAN 359 (413)
T ss_pred ccccCCCCccc--CCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhHHHHHHHHHh
Confidence 432 3456776 699999999999999999999999999999999999863 3468899999999999999888776
Q ss_pred HH
Q 008258 425 VQ 426 (572)
Q Consensus 425 ~~ 426 (572)
..
T Consensus 360 ~~ 361 (413)
T PRK07538 360 RL 361 (413)
T ss_pred hh
Confidence 54
No 33
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=5.2e-38 Score=332.43 Aligned_cols=342 Identities=21% Similarity=0.243 Sum_probs=218.4
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeee
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~ 121 (572)
++.||+||||||+||++|++|++.|++|+|+||.+.+...++++.++++++++|+++ |+++.+.+.+.+... +.+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~l-g~~~~~~~~~~~~~~---~~~~ 78 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDAL-GVGEAARQRAVFTDH---LTMM 78 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHc-CChHHHHhhccCCcc---eEEE
Confidence 457999999999999999999999999999999998888889999999999999999 999998876655432 2222
Q ss_pred eCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258 122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (572)
Q Consensus 122 ~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~ 201 (572)
....|+.+...+... .+.. ..+.....+.|..|.+.|.+.+.+.+ ++++++++++++++
T Consensus 79 ~~~~~~~~~~~~~~~--~~~~-~~~~~~~~i~r~~l~~~L~~~~~~~~------------------~v~~~~~~~v~~i~ 137 (396)
T PRK08163 79 DAVDAEEVVRIPTGQ--AFRA-RFGNPYAVIHRADIHLSLLEAVLDHP------------------LVEFRTSTHVVGIE 137 (396)
T ss_pred eCCCCCEEEEeccch--hHHH-hcCCcEEEEEHHHHHHHHHHHHHhcC------------------CcEEEeCCEEEEEe
Confidence 233565554433211 0000 01122346789999999999987764 13899999999999
Q ss_pred eeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhc-CCc--cccccCcceEEEEEEecCccccccccCCCceE
Q 008258 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV-GID--LVGEKDLQKLVSVHFLSKDLGDYLLNERPGML 278 (572)
Q Consensus 202 ~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~l-g~~--~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (572)
++++++++++. +|+ +++||+||+|||++|.+|+.+ +.. +.+...++..+ ...++.... .....
T Consensus 138 ~~~~~v~v~~~---~g~----~~~ad~vV~AdG~~S~~r~~~~g~~~~~~g~~~~~~~~----~~~~~~~~~---~~~~~ 203 (396)
T PRK08163 138 QDGDGVTVFDQ---QGN----RWTGDALIGCDGVKSVVRQSLVGDAPRVTGHVVYRAVI----DVDDMPEDL---RINAP 203 (396)
T ss_pred cCCCceEEEEc---CCC----EEecCEEEECCCcChHHHhhccCCCCCccccEEEEEEE----eHHHCcchh---ccCcc
Confidence 88888877664 453 689999999999999999987 431 22222221111 111111111 01111
Q ss_pred EEEEecCceEEEEEecCCCCe-EEEEeecCCCC-CC--CCCCCHHHHHHHHHHHhCCCCCceeEE----EecCccc-cce
Q 008258 279 FFIFNTEAIGVLVAHDLKEGE-FILQVPFYPPQ-QN--LEDFSPEICEKLIFKLVGWELSDIDVI----DIKPWVM-HAE 349 (572)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~----~~~~w~~-~~~ 349 (572)
..+..++...+..+. ..+. +.+.+.+..+. .. ....+.+.+ .+.+.++.+...+++ ....|.+ ...
T Consensus 204 ~~~~g~~~~~~~~p~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (396)
T PRK08163 204 VLWAGPHCHLVHYPL--RGGEQYNLVVTFHSREQEEWGVKDGSKEEV---LSYFEGIHPRPRQMLDKPTSWKRWATADRE 278 (396)
T ss_pred EEEEcCCceEEEEEe--cCCeEEEEEEEECCCCCcccccCCCCHHHH---HHHHcCCChHHHHHHhcCCceeEccccCCC
Confidence 222233332222222 2232 22222221111 11 011122222 222222221111111 0111222 223
Q ss_pred ecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258 350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR 429 (572)
Q Consensus 350 ~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~ 429 (572)
..++|. .|||+|+|||||.|+|+.|||+|+||+||.+|++.|... +...+.+|+.|+++|+|++..++..+....+
T Consensus 279 ~~~~~~--~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~--~~~~~~al~~y~~~R~~r~~~~~~~s~~~~~ 354 (396)
T PRK08163 279 PVAKWS--TGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGC--DGDAEAAFALYESVRIPRTARVVLSAREMGR 354 (396)
T ss_pred cccccc--cCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 445675 599999999999999999999999999999999999752 3446789999999999999999888876554
Q ss_pred Hh
Q 008258 430 AA 431 (572)
Q Consensus 430 ~~ 431 (572)
..
T Consensus 355 ~~ 356 (396)
T PRK08163 355 IY 356 (396)
T ss_pred hh
Confidence 33
No 34
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=5.4e-38 Score=331.89 Aligned_cols=339 Identities=18% Similarity=0.223 Sum_probs=221.4
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-----CCCCeeeeChhHHHHHHhhcchHHHHHhcC-CCccccc
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-----THPQAHFINNRYALVFRKLDGLAEEIERSQ-PPVDLWR 116 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~-----~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~-~~~~~~~ 116 (572)
++||+||||||+||++|+.|+++|++|+|+||.+.+. ..+++..++++++++|+++ |+++++...+ .+...+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~l-Gl~~~~~~~~~~~~~~~- 80 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRL-GAWDRIPEDEISPLRDA- 80 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHC-CChhhhccccCCccceE-
Confidence 5899999999999999999999999999999998642 2356677899999999999 9999886543 222111
Q ss_pred ceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHh-cCceeeccCCcccccccccccceEEecc
Q 008258 117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGH 195 (572)
Q Consensus 117 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~g~ 195 (572)
... +..+......+.. .. ......+.++|..|++.|++.+.+ .|+ ++++++
T Consensus 81 --~~~-~~~~~~~~~~~~~---~~---~~~~~g~~~~~~~l~~~l~~~~~~~~g~-------------------~i~~~~ 132 (392)
T PRK09126 81 --KVL-NGRSPFALTFDAR---GR---GADALGYLVPNHLIRRAAYEAVSQQDGI-------------------ELLTGT 132 (392)
T ss_pred --EEE-cCCCCceeEeehh---hc---CCCcceEEEeHHHHHHHHHHHHhhCCCc-------------------EEEcCC
Confidence 111 1111111111100 00 001112346788899999888754 344 899999
Q ss_pred EEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCC
Q 008258 196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERP 275 (572)
Q Consensus 196 ~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (572)
++++++++++++++++. +|+ +++||+||+|||.+|.||+.+|++.......+..+...+... ....
T Consensus 133 ~v~~~~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~ 198 (392)
T PRK09126 133 RVTAVRTDDDGAQVTLA---NGR----RLTARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHE-------LPHH 198 (392)
T ss_pred eEEEEEEcCCeEEEEEc---CCC----EEEeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEecc-------CCCC
Confidence 99999988888877764 453 689999999999999999999876543322222221111111 1112
Q ss_pred ceEEEEEecCceEEEEEecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCceeE-EEecCccccceeccc
Q 008258 276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDIDV-IDIKPWVMHAEVAEK 353 (572)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i-~~~~~w~~~~~~a~~ 353 (572)
...+.++.++...++++.+ .+.+.+.+...++. ......+++.+.+.+.+.+......... .....|+.....+++
T Consensus 199 ~~~~~~~~~~~~~~~~P~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (392)
T PRK09126 199 HTAWEWFGYGQTLALLPLN--GHLSSLVLTLPPDQIEALLALDPEAFAAEVTARFKGRLGAMRLVSSRHAYPLVAVYAHR 276 (392)
T ss_pred CEEEEEecCCCCeEEeECC--CCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCCcEeechHHHHHH
Confidence 2334444444433333333 23444433322211 0112344555544444444322222221 122345555556778
Q ss_pred ccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc---CCCchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258 354 FLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK---DIAPASILNTYETERKPIAEFNTALSVQNFR 429 (572)
Q Consensus 354 ~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~---g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~ 429 (572)
|. .+||+|+|||||.++|++|||+|+||+||.+|+|+|+.+++ +...+++|+.|+++|++++..++..+....+
T Consensus 277 ~~--~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~ 353 (392)
T PRK09126 277 FV--AKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAA 353 (392)
T ss_pred Hh--hcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86 59999999999999999999999999999999999998874 2345789999999999999988887765444
No 35
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=2.5e-37 Score=328.37 Aligned_cols=345 Identities=21% Similarity=0.294 Sum_probs=226.1
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcC-CCccccccee
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQ-PPVDLWRKFI 119 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~-~~~~~~~~~~ 119 (572)
..++||+||||||+|+++|+.|+++|++|+||||++.+....++..+++.++++|+++ |+++++.+.. .+...+.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~l-G~~~~~~~~~~~~~~~~~--- 79 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDEL-GLLERFLELPHQKVRTLR--- 79 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHc-CChhHHhhcccceeeeEE---
Confidence 4568999999999999999999999999999999976655568889999999999999 9999887633 2332221
Q ss_pred eeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhc-CceeeccCCcccccccccccceEEeccEEE
Q 008258 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECV 198 (572)
Q Consensus 120 ~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~ 198 (572)
.. ..|......+... ... ..+ ....+++..+.+.|.+.+.+. |+ +++++++++
T Consensus 80 ~~--~~~~~~~~~~~~~---~~~-~~~-~~~~v~~~~l~~~L~~~~~~~~~v-------------------~i~~~~~v~ 133 (407)
T PRK06185 80 FE--IGGRTVTLADFSR---LPT-PYP-YIAMMPQWDFLDFLAEEASAYPNF-------------------TLRMGAEVT 133 (407)
T ss_pred EE--ECCeEEEecchhh---cCC-CCC-cEEEeehHHHHHHHHHHHhhCCCc-------------------EEEeCCEEE
Confidence 11 1233222222110 000 001 124578889999999988664 44 899999999
Q ss_pred EEeeeCCeEE-EEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCce
Q 008258 199 SVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277 (572)
Q Consensus 199 ~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (572)
+++.+++.+. +++.. ++| +.+++||+||+|||.+|.||+.+|++.......+..+.+. ... . ...+..
T Consensus 134 ~~~~~~~~v~~v~~~~-~~g---~~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~--~~~-~----~~~~~~ 202 (407)
T PRK06185 134 GLIEEGGRVTGVRART-PDG---PGEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWFR--LPR-E----PDDPES 202 (407)
T ss_pred EEEEeCCEEEEEEEEc-CCC---cEEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEEEe--cCC-C----CCCCcc
Confidence 9988877764 44442 233 2378999999999999999999998776555444333222 111 0 111222
Q ss_pred EEEEEecCceEEEEEecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCC---CCcee-EEEecCccccceecc
Q 008258 278 LFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWE---LSDID-VIDIKPWVMHAEVAE 352 (572)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~---~~~~~-i~~~~~w~~~~~~a~ 352 (572)
.+..+.++....+++.+ +.+.+.+...... ......+.+.+.+.+.+..+.. ...++ ......|++....++
T Consensus 203 ~~~~~~~~g~~~llP~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~ 279 (407)
T PRK06185 203 LMGRFGPGQGLIMIDRG---DYWQCGYVIPKGGYAALRAAGLEAFRERVAELAPELADRVAELKSWDDVKLLDVRVDRLR 279 (407)
T ss_pred cceEecCCcEEEEEcCC---CeEEEEEEecCCCchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCccccEEEEEeccccc
Confidence 33445555444444332 4444433322211 1112233444444444443221 11111 111223445556677
Q ss_pred cccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCC-CchhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258 353 KFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI-APASILNTYETERKPIAEFNTALSVQNFRAA 431 (572)
Q Consensus 353 ~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~-~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~ 431 (572)
+|. ++|++|+|||||.++|.+|||+|+||+||.+|+|.|+..+++. ..+.+|+.|+++|++....+...+....+.+
T Consensus 280 ~~~--~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~ 357 (407)
T PRK06185 280 RWH--RPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVSDRDLAAVQRRREFPTRVTQALQRRIQRRL 357 (407)
T ss_pred ccc--CCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 786 5999999999999999999999999999999999999887543 4458999999999999988776665444433
No 36
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=3.8e-37 Score=322.21 Aligned_cols=334 Identities=17% Similarity=0.178 Sum_probs=209.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTSV 124 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~~ 124 (572)
||+||||||+||++|+.|+++|++|+||||++.+...+.++.+.++++++|+++ |+++++.+.+.+..... ..+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~l-Gl~~~~~~~~~~~~~~~----~~~~ 77 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERM-GLLAAAQEHKTRIRGAS----FVDR 77 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhc-CCHHHHHhhccCccceE----EEeC
Confidence 899999999999999999999999999999999888888899999999999999 99999987665543221 1234
Q ss_pred CCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeC
Q 008258 125 TGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD 204 (572)
Q Consensus 125 ~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~ 204 (572)
+|..+..........+. . ......+.|..|.++|.+.+ ..| ++++++++++++++++
T Consensus 78 ~g~~~~~~~~~~~~~~~--~-~~~~~~i~R~~L~~~l~~~~-~~~-------------------v~i~~~~~v~~i~~~~ 134 (372)
T PRK05868 78 DGNELFRDTESTPTGGP--V-NSPDIELLRDDLVELLYGAT-QPS-------------------VEYLFDDSISTLQDDG 134 (372)
T ss_pred CCCEEeecccccccCCC--C-CCceEEEEHHHHHHHHHHhc-cCC-------------------cEEEeCCEEEEEEecC
Confidence 56544321110000000 0 11123456777877765533 233 3899999999999988
Q ss_pred CeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCcccc-ccCcceEEEEEEecCccccccccCCCceEEEEEe
Q 008258 205 QCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVG-EKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN 283 (572)
Q Consensus 205 ~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 283 (572)
++|++++. +|+ ++++|+||||||++|.||+.+...... ...+.. ....+..+. .. . ......|.+.
T Consensus 135 ~~v~v~~~---dg~----~~~adlvIgADG~~S~vR~~~~~~~~~~~~~~g~-~~~~~~~~~---~~-~-~~~~~~~~~g 201 (372)
T PRK05868 135 DSVRVTFE---RAA----AREFDLVIGADGLHSNVRRLVFGPEEQFVKRLGT-HAAIFTVPN---FL-E-LDYWQTWHYG 201 (372)
T ss_pred CeEEEEEC---CCC----eEEeCEEEECCCCCchHHHHhcCCcccceeecce-EEEEEEcCC---CC-C-CCcceEEEec
Confidence 88888876 554 578999999999999999998432111 111111 111111111 11 1 1122223334
Q ss_pred cCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHh---CCCCCce-eEEE-ec--Ccc-ccceeccccc
Q 008258 284 TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDI-DVID-IK--PWV-MHAEVAEKFL 355 (572)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~-~i~~-~~--~w~-~~~~~a~~~~ 355 (572)
++....+.+.... ......+.+............+...+.+++.+ +|....+ +.+. .. .|. +.....++|.
T Consensus 202 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~~~~~~~~~~~~~w~ 280 (372)
T PRK05868 202 DSTMAGVYSARNN-TEARAALAFMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDFYFDEMSQILMDRWS 280 (372)
T ss_pred CCcEEEEEecCCC-CceEEEEEEecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCceeeccceEEecCCCC
Confidence 4443333332211 22111111111110111112223334444443 4542221 1211 11 122 3444567886
Q ss_pred ccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHH
Q 008258 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALS 424 (572)
Q Consensus 356 ~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s 424 (572)
+|||+|+|||||.++|+.|||+|+||+||++||+.|+.. ..+.+++|+.||+..||+..+.+...
T Consensus 281 --~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~--~~~~~~al~~ye~~~~~~~~~~q~~~ 345 (372)
T PRK05868 281 --RGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAA--GDDYQLGFANYHAEFHGFVERNQWLV 345 (372)
T ss_pred --CCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhHHHHHhhhhh
Confidence 699999999999999999999999999999999999763 33578999999999888887655543
No 37
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=1.6e-37 Score=328.65 Aligned_cols=343 Identities=20% Similarity=0.287 Sum_probs=223.3
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCC-C----CCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcc
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNK-A----FSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVD 113 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~---Gi~v~viEr~~-~----~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~ 113 (572)
+.+||+||||||+|+++|+.|+|+ |++|+||||.. . +...+++..++++++++|+++ |+++++.+.+.+..
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~~~~~ 80 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARL-GVWQALADCATPIT 80 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHC-CChhhhHhhcCCcc
Confidence 458999999999999999999998 99999999953 2 122357899999999999999 99999988766543
Q ss_pred cccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEe
Q 008258 114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM 193 (572)
Q Consensus 114 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~ 193 (572)
.+. .. + .+. ...... ...++ ..+.....+.|..|++.|.+.+.+.+ ++++++
T Consensus 81 ~~~---~~-~-~~~-~~~~~~-~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~------------------g~~~~~ 132 (395)
T PRK05732 81 HIH---VS-D-RGH-AGFVRL-DAEDY---GVPALGYVVELHDVGQRLFALLDKAP------------------GVTLHC 132 (395)
T ss_pred EEE---Ee-c-CCC-CceEEe-ehhhc---CCCccEEEEEhHHHHHHHHHHHhcCC------------------CcEEEc
Confidence 321 11 1 111 111000 00011 01211245778899999999886642 238999
Q ss_pred ccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccC
Q 008258 194 GHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNE 273 (572)
Q Consensus 194 g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~ 273 (572)
++++++++++++++++++. +|. ++++|+||+|||.+|.||+.+++........+..+...+.... .
T Consensus 133 ~~~v~~i~~~~~~~~v~~~---~g~----~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 198 (395)
T PRK05732 133 PARVANVERTQGSVRVTLD---DGE----TLTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSE-------A 198 (395)
T ss_pred CCEEEEEEEcCCeEEEEEC---CCC----EEEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecC-------C
Confidence 9999999988888887764 443 6899999999999999999998776544332222222221111 0
Q ss_pred CCceEEEEEecCceEEEEEecCCCCeEEEEeecCCCC-CCCCCCCHHHHHHHHHHHhCCCCCce-eEEEecCccccceec
Q 008258 274 RPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQ-QNLEDFSPEICEKLIFKLVGWELSDI-DVIDIKPWVMHAEVA 351 (572)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~i~~~~~w~~~~~~a 351 (572)
.....+..+.+.....+++.+ .+.+.+.+.+.... .....++.+...+.+.+.+++....+ +......|++....+
T Consensus 199 ~~~~~~~~~~~~g~~~~~p~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 276 (395)
T PRK05732 199 HQGRAFERFTEHGPLALLPMS--DGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQAFGWRLGRITHAGKRSAYPLALVTA 276 (395)
T ss_pred CCCEEEEeecCCCCEEEeECC--CCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHHhhhcceeecCCcceecccccch
Confidence 111122223333333333333 24433332221111 11123444555555555555433222 122233455555566
Q ss_pred ccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCC---chhhHhhHHHhhhHHHHHhHHHHHHHH
Q 008258 352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIA---PASILNTYETERKPIAEFNTALSVQNF 428 (572)
Q Consensus 352 ~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~---~~~~L~~Y~~eR~~~a~~~~~~s~~~~ 428 (572)
++|. +|||+|+|||||.++|++|||+|+||+||.+|||+|+.++++.. .+.+|+.|+++|++++...+..+....
T Consensus 277 ~~~~--~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~ 354 (395)
T PRK05732 277 AQQI--SHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLV 354 (395)
T ss_pred hhhc--cCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776 69999999999999999999999999999999999998775432 357999999999999988888776555
Q ss_pred HHh
Q 008258 429 RAA 431 (572)
Q Consensus 429 ~~~ 431 (572)
+.+
T Consensus 355 ~~~ 357 (395)
T PRK05732 355 RLF 357 (395)
T ss_pred HHH
Confidence 443
No 38
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=320.07 Aligned_cols=335 Identities=19% Similarity=0.223 Sum_probs=220.0
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~ 122 (572)
..||+||||||+||++|+.|++.|++|+|+||++.+...+.+..++++++++|+++ |+.+.+.+.+.+...+. + .
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~-gl~~~~~~~~~~~~~~~---~-~ 78 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALREL-GVLDECLEAGFGFDGVD---L-F 78 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHc-CCHHHHHHhCCCccceE---E-E
Confidence 46999999999999999999999999999999998888889999999999999999 99999888766554322 1 2
Q ss_pred CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (572)
Q Consensus 123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~ 202 (572)
+..|+.+...+... +.....+ ....+.|..|.+.|.+.+.+.|+ +++++++++++++
T Consensus 79 ~~~g~~~~~~~~~~---~~~~~~~-~~~~i~r~~l~~~L~~~~~~~gv-------------------~v~~~~~v~~i~~ 135 (375)
T PRK06847 79 DPDGTLLAELPTPR---LAGDDLP-GGGGIMRPALARILADAARAAGA-------------------DVRLGTTVTAIEQ 135 (375)
T ss_pred CCCCCEEEecCccc---ccccCCC-CcccCcHHHHHHHHHHHHHHhCC-------------------EEEeCCEEEEEEE
Confidence 34566554332111 0000001 23467899999999999988776 8999999999998
Q ss_pred eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhc-CCccccccCcceEEEEEEecCccccccccCCCceEEEE
Q 008258 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV-GIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI 281 (572)
Q Consensus 203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~l-g~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (572)
+++++++++. +|+ ++++|+||+|||.+|.+|+.+ +.... ..+.+...+....... ..... ...+
T Consensus 136 ~~~~~~v~~~---~g~----~~~ad~vI~AdG~~s~~r~~l~~~~~~--~~~~g~~~~~~~~~~~-----~~~~~-~~~~ 200 (375)
T PRK06847 136 DDDGVTVTFS---DGT----TGRYDLVVGADGLYSKVRSLVFPDEPE--PEYTGQGVWRAVLPRP-----AEVDR-SLMY 200 (375)
T ss_pred cCCEEEEEEc---CCC----EEEcCEEEECcCCCcchhhHhcCCCCC--ceeccceEEEEEecCC-----CCccc-eEEE
Confidence 8888777664 453 688999999999999999987 43221 1111111111111100 00011 1223
Q ss_pred EecCceEEEEEecCCCCe-EEEEeecCCCCCCCCCCCHHHHHHHHHHHhC-CCCCc---e-eE----EEecCccccc-ee
Q 008258 282 FNTEAIGVLVAHDLKEGE-FILQVPFYPPQQNLEDFSPEICEKLIFKLVG-WELSD---I-DV----IDIKPWVMHA-EV 350 (572)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~---~-~i----~~~~~w~~~~-~~ 350 (572)
..++....+.+. ..+. |.+... ..+ ....++++...+.+++.+. +.... + +. .....|++.. ..
T Consensus 201 ~~~~~~~~~~p~--~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (375)
T PRK06847 201 LGPTTKAGVVPL--SEDLMYLFVTE-PRP--DNPRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLLV 275 (375)
T ss_pred eCCCcEEEEEcC--CCCeEEEEEec-cCc--ccccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhccC
Confidence 333332222222 2232 222221 111 1122344444444444332 21100 0 00 1111223322 23
Q ss_pred cccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHHH
Q 008258 351 AEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFRA 430 (572)
Q Consensus 351 a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~ 430 (572)
..+|. .|||+|+|||||.++|++|||+|+||+||.+|+++|.. ....+.+|+.|+++|+|+++.+++.|.+....
T Consensus 276 ~~~~~--~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~---~~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~ 350 (375)
T PRK06847 276 PAPWH--RGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELAR---HDSLEAALQAYYARRWERCRMVVEASARIGRI 350 (375)
T ss_pred CCCcc--CCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 45575 69999999999999999999999999999999999975 34567899999999999999999998866654
No 39
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=3.8e-36 Score=316.94 Aligned_cols=333 Identities=15% Similarity=0.137 Sum_probs=201.0
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeee
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~-~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~ 121 (572)
..+|+||||||+||++|+.|++.|++|+|+||.+.+ ...+.+..++++++++|+++ |+.+.. ..+.+.... .+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~l-g~~~~~-~~~~~~~~~---~~- 79 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEA-GVALPA-DIGVPSRER---IY- 79 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHc-CCCccc-ccccCccce---EE-
Confidence 479999999999999999999999999999998754 34566788999999999999 887654 333332211 11
Q ss_pred eCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258 122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (572)
Q Consensus 122 ~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~ 201 (572)
.+..|+.+... +.....+.+..|.+.|++.+ ++++++++++|++++
T Consensus 80 ~~~~g~~~~~~-------------~~~~~~~~~~~l~~~L~~~~---------------------~~~~i~~~~~v~~i~ 125 (386)
T PRK07236 80 LDRDGRVVQRR-------------PMPQTQTSWNVLYRALRAAF---------------------PAERYHLGETLVGFE 125 (386)
T ss_pred EeCCCCEeecc-------------CCCccccCHHHHHHHHHHhC---------------------CCcEEEcCCEEEEEE
Confidence 22345443221 11112245566777766543 234799999999999
Q ss_pred eeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecC--ccccccccCCCceEE
Q 008258 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSK--DLGDYLLNERPGMLF 279 (572)
Q Consensus 202 ~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~ 279 (572)
++++++++++. +|+ +++||+||||||++|.||+++. +... ..+.+.+....... .+.......-.....
T Consensus 126 ~~~~~v~v~~~---~g~----~~~ad~vIgADG~~S~vR~~l~-~~~~-~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~ 196 (386)
T PRK07236 126 QDGDRVTARFA---DGR----RETADLLVGADGGRSTVRAQLL-PDVR-PTYAGYVAWRGLVDEAALPPEARAALRDRFT 196 (386)
T ss_pred ecCCeEEEEEC---CCC----EEEeCEEEECCCCCchHHHHhC-CCCC-CCcCCeEEEEEecchHHcCchhhhhcccceE
Confidence 99889888775 554 6899999999999999999872 2111 11222221111111 111000000011122
Q ss_pred EEEecCceEEEEEecCCC-------C--eEEEEeecCCCCCC-----------------CCCCCHHHHHHHHHHHh-C-C
Q 008258 280 FIFNTEAIGVLVAHDLKE-------G--EFILQVPFYPPQQN-----------------LEDFSPEICEKLIFKLV-G-W 331 (572)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~l~~~~-~-~ 331 (572)
++..++...+....+... . .|++..+...+... .....++.. +.+++.. + +
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~ 275 (386)
T PRK07236 197 FQLGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVL-AELRDDAAELL 275 (386)
T ss_pred EEEcCCceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHH-HHHHHHHHHhc
Confidence 222333222222221110 1 23333332211000 001122222 2232221 1 2
Q ss_pred CCCceeEE----EecCccccceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHh
Q 008258 332 ELSDIDVI----DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILN 407 (572)
Q Consensus 332 ~~~~~~i~----~~~~w~~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~ 407 (572)
.+.-.+++ ....|.+.....++|. .|||+|+|||||.++|+.|||+|+||+||.+|+++|.... ...+.+|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~--~~~~~al~ 351 (386)
T PRK07236 276 APVFAELVEATAQPFVQAIFDLEVPRMA--FGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA--GDIDAALA 351 (386)
T ss_pred CHHHHHHHhhCcCchhhhhhcccCcccc--cCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc--cchHHHHH
Confidence 11000110 1112334334456675 6999999999999999999999999999999999998642 23578999
Q ss_pred hHHHhhhHHHHHhHHHHHHHHH
Q 008258 408 TYETERKPIAEFNTALSVQNFR 429 (572)
Q Consensus 408 ~Y~~eR~~~a~~~~~~s~~~~~ 429 (572)
.|+++|+|+++.++..|.....
T Consensus 352 ~Ye~~R~~r~~~~~~~s~~~~~ 373 (386)
T PRK07236 352 AWEAERLAVGAAIVARGRRLGA 373 (386)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999998875543
No 40
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=1.3e-36 Score=323.54 Aligned_cols=340 Identities=20% Similarity=0.296 Sum_probs=209.4
Q ss_pred CEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCc-ccccc--eee
Q 008258 45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPV-DLWRK--FIY 120 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~-~~~~~--~~~ 120 (572)
+|+||||||+||++|++|+++| ++|+|+||++.+...+.++.++++++++|+++ |+.+.+.+.+... ..+.. +.+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~l-g~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGL-GLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHc-CChhHHHHHhcCCCccCcceeEEE
Confidence 6999999999999999999998 69999999999888889999999999999999 9998887654321 11111 111
Q ss_pred eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (572)
Q Consensus 121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v 200 (572)
.....++.+... + ........+.|..|.+.|++.+.. ..++++++|+++
T Consensus 81 ~~~~~~~~~~~~-------~---~~~~~~~~i~R~~l~~~L~~~~~~---------------------~~v~~~~~v~~i 129 (414)
T TIGR03219 81 RNGSDASYLGAT-------I---APGVGQSSVHRADFLDALLKHLPE---------------------GIASFGKRATQI 129 (414)
T ss_pred EecCccceeeee-------c---cccCCcccCCHHHHHHHHHHhCCC---------------------ceEEcCCEEEEE
Confidence 111122222110 0 001112357788888888776522 368899999999
Q ss_pred eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCC---------ccccccCcceEEEEEEecCccccc--
Q 008258 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGI---------DLVGEKDLQKLVSVHFLSKDLGDY-- 269 (572)
Q Consensus 201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~---------~~~g~~~~~~~~~~~~~~~~l~~~-- 269 (572)
+++++++++++. +|+ ++++|+||+|||++|.||+.+.. .+.|...++..+. ..++...
T Consensus 130 ~~~~~~~~v~~~---~g~----~~~ad~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~----~~~~~~~~~ 198 (414)
T TIGR03219 130 EEQAEEVQVLFT---DGT----EYRCDLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVD----SLQLREAYR 198 (414)
T ss_pred EecCCcEEEEEc---CCC----EEEeeEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEee----HHHHhhhhc
Confidence 998888888775 553 68899999999999999998731 1122222222111 1111100
Q ss_pred ---cccCCCceEEEEEecCceEEEEEecCCCCe-EEEEeecCCCCC------CCCCC-CHHHHHHHHHHHhCCCCCceeE
Q 008258 270 ---LLNERPGMLFFIFNTEAIGVLVAHDLKEGE-FILQVPFYPPQQ------NLEDF-SPEICEKLIFKLVGWELSDIDV 338 (572)
Q Consensus 270 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~-~~~~~~~~l~~~~~~~~~~~~i 338 (572)
..........++..++...+.++. ..++ +.+..-...+.. ....+ .+....++++.+.++.+.-.++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~ 276 (414)
T TIGR03219 199 AAGLDEHLVDVPQMYLGLDGHILTFPV--RQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARAL 276 (414)
T ss_pred cccccccccccceEEEcCCCeEEEEEC--CCCcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHH
Confidence 000000111222334333222222 2233 221111111100 00111 1111222333333332211010
Q ss_pred ----EEecCccccc-eecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHh-cCCCchhhHhhHHHh
Q 008258 339 ----IDIKPWVMHA-EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL-KDIAPASILNTYETE 412 (572)
Q Consensus 339 ----~~~~~w~~~~-~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~-~g~~~~~~L~~Y~~e 412 (572)
.....|.+.. ...++|. +|||+|+|||||.|+|+.|||+|+||+||.+|++.|.... .+...+.+|+.|+++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~w~--~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~~Ye~~ 354 (414)
T TIGR03219 277 LECIPAPTLWALHDLAELPGYV--HGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDV 354 (414)
T ss_pred HHhCCCCCceeeeeccccccee--eCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHHHHHHH
Confidence 1112343322 2346675 6999999999999999999999999999999999998753 344568899999999
Q ss_pred hhHHHHHhHHHHHHHHHHh
Q 008258 413 RKPIAEFNTALSVQNFRAA 431 (572)
Q Consensus 413 R~~~a~~~~~~s~~~~~~~ 431 (572)
|+|++..+++.|....+..
T Consensus 355 R~~r~~~~~~~s~~~~~~~ 373 (414)
T TIGR03219 355 RRPRACRVQRTSREAGELY 373 (414)
T ss_pred HhHHHHHHHHHHHHHHHHh
Confidence 9999999999998766543
No 41
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=3.3e-35 Score=320.16 Aligned_cols=353 Identities=18% Similarity=0.229 Sum_probs=210.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCC---CeeeeChhHHHHHHhhcc--hHHHHHhcCCCccc
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHP---QAHFINNRYALVFRKLDG--LAEEIERSQPPVDL 114 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~-~~~~---~a~~l~~rt~e~l~~l~G--l~~~l~~~~~~~~~ 114 (572)
....+|+||||||+||++|++|+|+|++|+||||++.. ...+ +++.|+++++++|+.+ | +.+++.+.+.....
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~L-Gl~~~e~l~~~g~~~~~ 157 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAI-DIDVAEQVMEAGCITGD 157 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHc-CcchHHHHHhhcCcccc
Confidence 45689999999999999999999999999999998643 2222 5688999999999999 7 46777766543211
Q ss_pred ccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEec
Q 008258 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (572)
Q Consensus 115 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g 194 (572)
+...+.....|......+...... .. ..+ ....++|..|+++|.+.+ +. ..++++
T Consensus 158 -~i~~~~d~~~G~~~~~~~~~~~~~-~~-g~p-~~~~I~R~~L~~~L~~al---g~------------------~~i~~g 212 (668)
T PLN02927 158 -RINGLVDGISGSWYVKFDTFTPAA-SR-GLP-VTRVISRMTLQQILARAV---GE------------------DVIRNE 212 (668)
T ss_pred -eeeeeeecCCCceEeecccccccc-cc-CCC-eEEEEeHHHHHHHHHhhC---CC------------------CEEEcC
Confidence 111122223454443333221100 00 011 124688999999997654 21 257899
Q ss_pred cEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhc-CCccccccCcceEEEEEEecCccccccccC
Q 008258 195 HECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLV-GIDLVGEKDLQKLVSVHFLSKDLGDYLLNE 273 (572)
Q Consensus 195 ~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~l-g~~~~g~~~~~~~~~~~~~~~~l~~~~~~~ 273 (572)
++|+++++++++|++++. +|+ ++++|+||||||++|.+|+.+ +..- ..+.+.+.+.......... ..
T Consensus 213 ~~V~~I~~~~d~VtV~~~---dG~----ti~aDlVVGADG~~S~vR~~l~g~~~---~~~sG~~~~rgi~~~~p~~--~~ 280 (668)
T PLN02927 213 SNVVDFEDSGDKVTVVLE---NGQ----RYEGDLLVGADGIWSKVRNNLFGRSE---ATYSGYTCYTGIADFIPAD--IE 280 (668)
T ss_pred CEEEEEEEeCCEEEEEEC---CCC----EEEcCEEEECCCCCcHHHHHhcCCCC---CcccceEEEEEEcCCCccc--cc
Confidence 999999999999887765 553 578999999999999999987 3221 1111222111111100000 00
Q ss_pred CCceEEEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEE------ecCcccc
Q 008258 274 RPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID------IKPWVMH 347 (572)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~------~~~w~~~ 347 (572)
.... ..+..+.. .++..+...+.+.+......+... .+-.+....++.+.+-+|.+...+++. ...|.+.
T Consensus 281 ~~~~-~~~~G~~~--~~v~~~v~~g~~~~~~f~~~p~~~-~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iy 356 (668)
T PLN02927 281 SVGY-RVFLGHKQ--YFVSSDVGGGKMQWYAFHEEPAGG-ADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIY 356 (668)
T ss_pred ccce-EEEEcCCe--EEEEEcCCCCeEEEEEEEECCccc-cccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEE
Confidence 1111 11222222 222223233433332211111111 011111222222222334321111111 1123332
Q ss_pred ce-ecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcC-------CCchhhHhhHHHhhhHHHHH
Q 008258 348 AE-VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKD-------IAPASILNTYETERKPIAEF 419 (572)
Q Consensus 348 ~~-~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g-------~~~~~~L~~Y~~eR~~~a~~ 419 (572)
.. ...+|. +|||+|+|||||.|+|+.|||+|+||+||+.|+++|....++ ...+.+|+.|+++|+|++..
T Consensus 357 d~~p~~~W~--~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~ 434 (668)
T PLN02927 357 DRSPGFTWG--KGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAI 434 (668)
T ss_pred eccCCCccc--cCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 22 223565 699999999999999999999999999999999999886532 23568999999999999999
Q ss_pred hHHHHHHHHHHhcccccc
Q 008258 420 NTALSVQNFRAAMEVPSA 437 (572)
Q Consensus 420 ~~~~s~~~~~~~~~~~~~ 437 (572)
++..+.....+.......
T Consensus 435 i~~~ar~a~~~~~~~~~y 452 (668)
T PLN02927 435 IHAMARMAAIMASTYKAY 452 (668)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888876655555444433
No 42
>PLN02985 squalene monooxygenase
Probab=100.00 E-value=1.6e-34 Score=312.34 Aligned_cols=343 Identities=17% Similarity=0.163 Sum_probs=208.5
Q ss_pred CCCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCC-Cccccc
Q 008258 38 VSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQP-PVDLWR 116 (572)
Q Consensus 38 ~~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~-~~~~~~ 116 (572)
++....+||+||||||+|+++|++|++.|++|+|+||.+.......+..++++++++|+++ |+++++..... +..
T Consensus 38 ~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~L-Gl~d~l~~~~~~~~~--- 113 (514)
T PLN02985 38 ERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKL-GLEDCLEGIDAQKAT--- 113 (514)
T ss_pred cCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHc-CCcchhhhccCcccc---
Confidence 4456678999999999999999999999999999999876555667889999999999999 99999876532 222
Q ss_pred ceeeeeCCCCCeee-eecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEecc
Q 008258 117 KFIYCTSVTGPILG-SVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH 195 (572)
Q Consensus 117 ~~~~~~~~~G~~~~-~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~ 195 (572)
.+... .+|+... ..+.. ...+ ........++|.+|.+.|++++.+.+ +++++.+
T Consensus 114 ~~~v~--~~g~~~~~~~~~~-~~~~---~~~~~g~~i~r~~l~~~L~~~a~~~~------------------~V~i~~g- 168 (514)
T PLN02985 114 GMAVY--KDGKEAVAPFPVD-NNNF---PYEPSARSFHNGRFVQRLRQKASSLP------------------NVRLEEG- 168 (514)
T ss_pred cEEEE--ECCEEEEEeCCCC-CcCC---CcccceeeeecHHHHHHHHHHHHhCC------------------CeEEEee-
Confidence 22221 2444321 11100 0000 00111246788999999999987753 2367665
Q ss_pred EEEEEeeeCCe-EEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCc-ceEEEEEEecCccccccccC
Q 008258 196 ECVSVSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDL-QKLVSVHFLSKDLGDYLLNE 273 (572)
Q Consensus 196 ~v~~v~~~~~~-v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~-~~~~~~~~~~~~l~~~~~~~ 273 (572)
+++++.++++. +.|++.+. +| ++.+++||+||+|||++|.+|++++........+ ..++ ..+.. ..
T Consensus 169 tvv~li~~~~~v~gV~~~~~-dG--~~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~-----~~~~~----~~ 236 (514)
T PLN02985 169 TVKSLIEEKGVIKGVTYKNS-AG--EETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYI-----SKNCR----LE 236 (514)
T ss_pred eEEEEEEcCCEEEEEEEEcC-CC--CEEEEECCEEEECCCCchHHHHHhccCCCcceeEeEEEE-----Ecccc----CC
Confidence 46666554443 24555422 34 3456889999999999999999997643321111 1111 11100 11
Q ss_pred CCceEEEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHH------------HHHHHHHHh--CCCCCceeEE
Q 008258 274 RPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEI------------CEKLIFKLV--GWELSDIDVI 339 (572)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~~--~~~~~~~~i~ 339 (572)
.+...+.++.+....++.+.......+.+.++... .+..+... +.+.+++.+ ++... .++.
T Consensus 237 ~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~-~~~~ 311 (514)
T PLN02985 237 EPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPDN----IPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEG-AHIK 311 (514)
T ss_pred CCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCCC----CCCcChhhHHHHHHhccccccCHHHHHHHHhhcccc-ccee
Confidence 23333444444433333333221112222333211 01111111 111222221 11111 1121
Q ss_pred EecCccccceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHh---cCCCchhhHhhHHHhhhHH
Q 008258 340 DIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVL---KDIAPASILNTYETERKPI 416 (572)
Q Consensus 340 ~~~~w~~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~---~g~~~~~~L~~Y~~eR~~~ 416 (572)
....+ ......+. ++|++|+|||||.++|.+|||||+|++||..|++.|...- +..+..++|++|+.+|+++
T Consensus 312 ~~p~~---~l~~~~~~--~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r 386 (514)
T PLN02985 312 VVPTK---RMSATLSD--KKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPM 386 (514)
T ss_pred ecCcc---cccccccC--CCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcc
Confidence 11111 11222332 5899999999999999999999999999999999997642 1223468999999999999
Q ss_pred HHHhHHHHHHHHHHh
Q 008258 417 AEFNTALSVQNFRAA 431 (572)
Q Consensus 417 a~~~~~~s~~~~~~~ 431 (572)
+..++.+|...++.+
T Consensus 387 ~~~i~~la~al~~~f 401 (514)
T PLN02985 387 SATVNTLGNAFSQVL 401 (514)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999998887655
No 43
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=2.6e-35 Score=294.15 Aligned_cols=337 Identities=21% Similarity=0.233 Sum_probs=198.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
.+|+|||||++||++|++|+|.|++|+|+|++..++..++++.+.-+++++|+.+ |+.+.+++.+.|...+. -.+.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai-~~~e~i~~~gip~~~~v---~~~~ 78 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAI-GLKEQIREQGIPLGGRV---LIHG 78 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHc-ccHHHHHHhcCccccee---eeec
Confidence 5899999999999999999999999999999999988899999998999999999 89999999998875442 3345
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEecc------EE
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH------EC 197 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~------~v 197 (572)
.+|++..++....+.++ ...+.|..+.+.++..+... ..|+|+. ..
T Consensus 79 ~sg~~~~~~~~~~~~~~--------i~r~~~r~ll~~lL~~a~~~--------------------~~ikf~~~~~~~~~~ 130 (420)
T KOG2614|consen 79 DSGKEVSRILYGEPDEY--------ILRINRRNLLQELLAEALPT--------------------GTIKFHSNLSCTSKD 130 (420)
T ss_pred CCCCeeEecccCCchHH--------HHHHHHHHHHHHHHHhhcCC--------------------Ceeeccccccccccc
Confidence 67777766543332221 23444555554444444332 3566664 33
Q ss_pred EEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccc--cccCCC
Q 008258 198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDY--LLNERP 275 (572)
Q Consensus 198 ~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~ 275 (572)
..++.......+++. +|+ ++++|++|||||++|.||+.|+........++.+.++.|........ .....+
T Consensus 131 ~~~~~~~~~~~v~l~---~g~----~~~~dlligCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~~~vf~~~~ 203 (420)
T KOG2614|consen 131 VEIETLGKKLVVHLS---DGT----TVKGDLLIGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFGKKVFAIYG 203 (420)
T ss_pred ceeeecccccceecC---CCc----EEEeeEEEEcCchHHHHHHHhcccCCcceeEEEEeeeeeccCCCCcccceecccC
Confidence 333333334444444 454 79999999999999999999987655555555555554443321110 001122
Q ss_pred ceEEEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHH---HHHH---hCCCCC-ceeEEEecCccccc
Q 008258 276 GMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKL---IFKL---VGWELS-DIDVIDIKPWVMHA 348 (572)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~---~~~~~~-~~~i~~~~~w~~~~ 348 (572)
+.++.+..+....+....-...-.+.+..++..++. ......+....+ +.++ .+.+.. .-.+....+|++-
T Consensus 204 ~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~~-l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i- 281 (420)
T KOG2614|consen 204 NGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEK-LKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLI- 281 (420)
T ss_pred CeEEEcccCCceEEEEEeecCCcccccccCcCCHHH-HhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCee-
Confidence 333333333222111111101111111111111110 011111111111 1111 121111 1123344455432
Q ss_pred eecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHH
Q 008258 349 EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNF 428 (572)
Q Consensus 349 ~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~ 428 (572)
..+.+ +++|+|+|||||+|.|+.|||+|+|++|+.+||.+|+...+. .+..+.+|++ .+....+.+.++.++
T Consensus 282 --~~~~s--~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d--~s~~~~~~s~--~~e~~~~ie~a~~~Y 353 (420)
T KOG2614|consen 282 --SVKCS--PGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIND--VSLAGEEYSR--ENESHAIIELAMYSY 353 (420)
T ss_pred --eeccC--CCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccc--hhccccceec--ccchhHHHHHHHHHH
Confidence 22222 579999999999999999999999999999999999998653 3444555554 222233344444444
Q ss_pred H
Q 008258 429 R 429 (572)
Q Consensus 429 ~ 429 (572)
.
T Consensus 354 ~ 354 (420)
T KOG2614|consen 354 K 354 (420)
T ss_pred H
Confidence 3
No 44
>PTZ00367 squalene epoxidase; Provisional
Probab=100.00 E-value=4.2e-33 Score=302.53 Aligned_cols=342 Identities=15% Similarity=0.100 Sum_probs=200.3
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF-STHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~-~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (572)
.++||+||||||+|+++|++|+++|++|+|+||.+.. .....+..++++++++|+++ |+++++...+.+...+. +
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~L-GL~d~l~~i~~~~~~~~--v- 107 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKEL-GMEECAEGIGMPCFGYV--V- 107 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHC-CChhhHhhcCcceeeeE--E-
Confidence 4589999999999999999999999999999998622 22345668999999999999 99999887766643221 1
Q ss_pred eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (572)
Q Consensus 121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v 200 (572)
.+.+|+.+ ..+. . .......+.+..+.+.|.+.+...- .++++++. .+++++
T Consensus 108 -~~~~G~~~-~i~~------~---~~~~g~~~~rg~~~~~Lr~~a~~~~----------------~~~V~v~~-~~v~~l 159 (567)
T PTZ00367 108 -FDHKGKQV-KLPY------G---AGASGVSFHFGDFVQNLRSHVFHNC----------------QDNVTMLE-GTVNSL 159 (567)
T ss_pred -EECCCCEE-EecC------C---CCCceeEeEHHHHHHHHHHHHHhhc----------------CCCcEEEE-eEEEEe
Confidence 12234433 1111 0 0111234567788888888772210 02335643 467766
Q ss_pred eeeCCe-----EEEEEEeccCC------------------ceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEE
Q 008258 201 SATDQC-----INVIASFLKEG------------------KCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLV 257 (572)
Q Consensus 201 ~~~~~~-----v~v~~~~~~~g------------------~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~ 257 (572)
.++++. ..|++...+.+ ....++++||+||||||++|.+|++++.......+.+.+.
T Consensus 160 ~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~ 239 (567)
T PTZ00367 160 LEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFV 239 (567)
T ss_pred ccccCccCCeeEEEEEecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEE
Confidence 443321 22333321100 0012478999999999999999999975432222233332
Q ss_pred EEEEecCccccccccCCCceEEEEEecCceEEEEEecCCCCeEEEEeecCCCCCC-CCCC-----------CHHHHHHHH
Q 008258 258 SVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQN-LEDF-----------SPEICEKLI 325 (572)
Q Consensus 258 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~~~~~~~~l 325 (572)
........ .+.+...+.++.++...++++.. .++..+.+.+..+... ..+. .++.+.+.+
T Consensus 240 g~~~~~~~------lp~~~~~~v~~g~~gpi~~yPl~--~~~~r~lv~~~~~~~p~~~~~~~~l~~~~~p~l~~~l~~~f 311 (567)
T PTZ00367 240 GLVLKNVR------LPKEQHGTVFLGKTGPILSYRLD--DNELRVLVDYNKPTLPSLEEQSEWLIEDVAPHLPENMRESF 311 (567)
T ss_pred EEEEeccc------CCCCCeeEEEEcCCceEEEEEcC--CCeEEEEEEecCCcCCChHHHHHHHHHhhcccCcHHHHHHH
Confidence 22221111 11233334445555444444443 3333222222111100 0000 011111111
Q ss_pred HHHhCCCCCceeEEEecCccccceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc--C--C-
Q 008258 326 FKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK--D--I- 400 (572)
Q Consensus 326 ~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~--g--~- 400 (572)
.+.+.. ...+ ..|+.....+..+. .+|++|+|||||.++|.+|||||+||+||..|+++|..+.+ + .
T Consensus 312 ~~~l~~-~~~l-----~~~p~~~~p~~~~~--~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~ 383 (567)
T PTZ00367 312 IRASKD-TKRI-----RSMPNARYPPAFPS--IKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQN 383 (567)
T ss_pred HHhhcc-cCCe-----EEeeHhhCCCccCC--CCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCch
Confidence 111110 0111 12333222233443 68999999999999999999999999999999999986431 1 1
Q ss_pred ---CchhhHh----hHHHhhhHHHHHhHHHHHHHHHHh
Q 008258 401 ---APASILN----TYETERKPIAEFNTALSVQNFRAA 431 (572)
Q Consensus 401 ---~~~~~L~----~Y~~eR~~~a~~~~~~s~~~~~~~ 431 (572)
+.+.+|+ +|+.+|++++..+...+...++.+
T Consensus 384 d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf 421 (567)
T PTZ00367 384 EMAEIEDAIQAAILSYARNRKTHASTINILSWALYSVF 421 (567)
T ss_pred hHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 1256677 999999999999888887766554
No 45
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.97 E-value=3.6e-30 Score=291.42 Aligned_cols=328 Identities=20% Similarity=0.257 Sum_probs=200.9
Q ss_pred CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcc--hHHHHHhcCCCcccccceee
Q 008258 45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDG--LAEEIERSQPPVDLWRKFIY 120 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~G--l~~~l~~~~~~~~~~~~~~~ 120 (572)
+|+||||||+||++|+.|+++ |++|+|+||++.....+.++.+++++++.|+.+ + +.+.+...... |.....
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~-~~~~~~~~~~~~~~---~~~~~~ 77 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAA-DPVSAAAIGDAFNH---WDDIDV 77 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhc-CHHHHHHHHHhccc---CCceEE
Confidence 799999999999999999998 899999999998877788999999999999877 5 33444332211 211111
Q ss_pred eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (572)
Q Consensus 121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v 200 (572)
. ..|.... .....+..+.|..|.++|++++.+.|+ +++++++++++
T Consensus 78 ~--~~g~~~~-------------~~g~~~~~i~R~~L~~~L~e~a~~~GV-------------------~i~~g~~v~~i 123 (765)
T PRK08255 78 H--FKGRRIR-------------SGGHGFAGIGRKRLLNILQARCEELGV-------------------KLVFETEVPDD 123 (765)
T ss_pred E--ECCEEEE-------------ECCeeEecCCHHHHHHHHHHHHHHcCC-------------------EEEeCCccCch
Confidence 1 1222211 011223568899999999999999887 88888887655
Q ss_pred eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEE
Q 008258 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280 (572)
Q Consensus 201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (572)
++. .+++|+||||||.+|.||+++...+.................. . .....+
T Consensus 124 ~~~-------------------~~~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~~~w~g~~~---~-----~~~~~~ 176 (765)
T PRK08255 124 QAL-------------------AADADLVIASDGLNSRIRTRYADTFQPDIDTRRCRFVWLGTHK---V-----FDAFTF 176 (765)
T ss_pred hhh-------------------hcCCCEEEEcCCCCHHHHHHHHhhcCCceecCCCceEEecCCC---c-----ccceeE
Confidence 320 1359999999999999999864322211100000000000000 0 000111
Q ss_pred EEecCceEE----EEEecCCCCeEEEEeecCC-CCCCCCCCCHHHHHHHHHHHh-CCCCCceeEEE------ecCccc-c
Q 008258 281 IFNTEAIGV----LVAHDLKEGEFILQVPFYP-PQQNLEDFSPEICEKLIFKLV-GWELSDIDVID------IKPWVM-H 347 (572)
Q Consensus 281 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~i~~------~~~w~~-~ 347 (572)
.+.+...++ ..........|.+.++... .......++++...+.+.+.+ ++.+ ...++. ...|.. .
T Consensus 177 ~~~~~~~g~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~-~~~li~~~~~~~~~~w~~~~ 255 (765)
T PRK08255 177 AFEETEHGWFQAHAYRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFADYLD-GHPLMSNASHLRGSAWINFP 255 (765)
T ss_pred EEEecCCceEEEEEeeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhHHhcC-CCcccccccccccceeeecc
Confidence 111111111 1111111122333322000 001223445554455555443 2221 112211 122543 3
Q ss_pred ceecccccccCCc----EEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHH
Q 008258 348 AEVAEKFLCCYNQ----IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTAL 423 (572)
Q Consensus 348 ~~~a~~~~~~~gr----V~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~ 423 (572)
....++|. .|| |+|+|||||.++|+.|||+|+||+||..|++.|... +...+.+|+.|+++|+++++.+++.
T Consensus 256 ~~~~~~w~--~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~--~~~~~~al~~ye~~R~~r~~~~~~~ 331 (765)
T PRK08255 256 RVVCERWV--HWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEH--PGDLPAALAAYEEERRVEVLRIQNA 331 (765)
T ss_pred eeccCCCc--cCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567776 588 999999999999999999999999999999999864 2256889999999999999999998
Q ss_pred HHHHHHHhcccccccCCCc
Q 008258 424 SVQNFRAAMEVPSALGLDP 442 (572)
Q Consensus 424 s~~~~~~~~~~~~~~g~~~ 442 (572)
|..+.+.+.......+.++
T Consensus 332 s~~~~~~~~~~~~~~~~~~ 350 (765)
T PRK08255 332 ARNSTEWFENVERYAGLEP 350 (765)
T ss_pred HHHhCceeeecchhhCCCH
Confidence 8876655544444445443
No 46
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.97 E-value=2.3e-28 Score=257.70 Aligned_cols=316 Identities=16% Similarity=0.190 Sum_probs=191.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
+||+||||||||+++|+.|++.|++|+|+||+. +...+++..++++ +++.+ |+.+++.... +..... .+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~-~~~~~cg~~i~~~---~l~~l-~i~~~~~~~~-----~~~~~~-~~ 69 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERAL-SNIKPCGGAIPPC---LIEEF-DIPDSLIDRR-----VTQMRM-IS 69 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCC-CCcCcCcCCcCHh---hhhhc-CCchHHHhhh-----cceeEE-Ec
Confidence 699999999999999999999999999999983 3345677888875 45666 7776655432 111111 12
Q ss_pred CCCCeeeeecCCCccccccccCCcc-ccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVS-VAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~-~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~ 202 (572)
.+|..+. .+. ..+.. ...++|..|++.|.+++.+.|+ +++.+ +++++..
T Consensus 70 ~~~~~~~-~~~---------~~~~~~~~~~~r~~fd~~L~~~a~~~G~-------------------~v~~~-~v~~v~~ 119 (388)
T TIGR02023 70 PSRVPIK-VTI---------PSEDGYVGMVRREVFDSYLRERAQKAGA-------------------ELIHG-LFLKLER 119 (388)
T ss_pred CCCceee-ecc---------CCCCCceEeeeHHHHHHHHHHHHHhCCC-------------------EEEee-EEEEEEE
Confidence 2332211 000 00111 2358999999999999998887 66655 5888988
Q ss_pred eCCeEEEEEEeccC-CceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEE
Q 008258 203 TDQCINVIASFLKE-GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI 281 (572)
Q Consensus 203 ~~~~v~v~~~~~~~-g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (572)
+++++++++...+. ..++..+++||+||+|||.+|.||+.++++.... +...+..++...+. .. ...+....++
T Consensus 120 ~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg~~~~~~--~~~a~~~~~~~~~~-~~--~~~~~~~~~~ 194 (388)
T TIGR02023 120 DRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELGLPKNLP--RVIAYQERIKLPDD-KM--AYYEELADVY 194 (388)
T ss_pred cCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcCCCCCCc--EEEEEEEEecCCch-hc--ccCCCeEEEE
Confidence 88888877762100 0112347999999999999999999998763211 11111112211110 00 1112222222
Q ss_pred E----ecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEecCccccceeccccccc
Q 008258 282 F----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCC 357 (572)
Q Consensus 282 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~ 357 (572)
+ .|+.++++++.. +...+.+... ....+.+.+.+.+.+..+... .+........+.....++|.
T Consensus 195 ~~~~~~p~~y~wv~P~~---~~~~vg~~~~-----~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~ip~~~~~~~~-- 262 (388)
T TIGR02023 195 YGGEVSPDFYGWVFPKG---DHIAVGTGTG-----THGFDAKQLQANLRRRAGLDG--GQTIRREAAPIPMKPRPRWD-- 262 (388)
T ss_pred ECCCcCCCceEEEeeCC---CeeEEeEEEC-----CCCCCHHHHHHHHHHhhCCCC--ceEeeeeeEecccccccccc--
Confidence 2 233344433332 2222222111 111234444445554433211 12222111122222334554
Q ss_pred CCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHH
Q 008258 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAE 418 (572)
Q Consensus 358 ~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~ 418 (572)
.+|++|+|||||.++|.+|+|+++||+++..+|+.|++.+++. ....|+.|+++.+..-.
T Consensus 263 ~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~-~~~~L~~Y~~~~~~~~~ 322 (388)
T TIGR02023 263 FGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNG-DATDLRHYERKFMKLYG 322 (388)
T ss_pred CCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999987643 35779999999886643
No 47
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.97 E-value=5.5e-28 Score=257.49 Aligned_cols=321 Identities=14% Similarity=0.150 Sum_probs=187.2
Q ss_pred CCCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccc
Q 008258 38 VSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRK 117 (572)
Q Consensus 38 ~~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~ 117 (572)
+|...++||+||||||||+++|+.|+++|++|+|+||++. ...+++..++. +.++.+ |+.+.+.... ...+
T Consensus 34 ~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~-~~k~cgg~i~~---~~l~~l-gl~~~~~~~~--i~~~-- 104 (450)
T PLN00093 34 KLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD-NAKPCGGAIPL---CMVGEF-DLPLDIIDRK--VTKM-- 104 (450)
T ss_pred CcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC-CCCCccccccH---hHHhhh-cCcHHHHHHH--hhhh--
Confidence 4556679999999999999999999999999999999864 44567877865 556667 7776654421 1111
Q ss_pred eeeeeCCCCCeeeeecCCCccccccccCCcc-ccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccE
Q 008258 118 FIYCTSVTGPILGSVDHMQPQDFEKVVSPVS-VAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHE 196 (572)
Q Consensus 118 ~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~-~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~ 196 (572)
.. .+..+..+. .. ....+.. ...++|..|++.|.+++.+.|+ +++.+ +
T Consensus 105 -~~-~~p~~~~v~-~~--------~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga-------------------~~~~~-~ 153 (450)
T PLN00093 105 -KM-ISPSNVAVD-IG--------KTLKPHEYIGMVRREVLDSFLRERAQSNGA-------------------TLING-L 153 (450)
T ss_pred -eE-ecCCceEEE-ec--------ccCCCCCeEEEecHHHHHHHHHHHHHHCCC-------------------EEEec-e
Confidence 11 112222111 00 0011111 2458999999999999999887 66655 4
Q ss_pred EEEEeee---CCeEEEEEEeccC--CceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccc
Q 008258 197 CVSVSAT---DQCINVIASFLKE--GKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLL 271 (572)
Q Consensus 197 v~~v~~~---~~~v~v~~~~~~~--g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~ 271 (572)
+++++.. ++.+.+++...+. +.++..+++||+||||||++|.||+.++... ......+...+...+. . .
T Consensus 154 v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg~~~---~~~~~~~~~~~~~~~~--~-~ 227 (450)
T PLN00093 154 FTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDIDAGD---YDYAIAFQERIKIPDD--K-M 227 (450)
T ss_pred EEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHhCCCC---cceeEEEEEEEeCChh--h-c
Confidence 6666532 3456666652110 0112347999999999999999999998642 1111111111111110 0 0
Q ss_pred cCCCceEEEEE----ecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEEe--cCcc
Q 008258 272 NERPGMLFFIF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVIDI--KPWV 345 (572)
Q Consensus 272 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~--~~w~ 345 (572)
...+....+++ .|+.++++++.. +...+.+.... ...+.....+.+++.........++... .+++
T Consensus 228 ~~~~~~~~~~~g~~~~p~~Y~WifP~g---~~~~VG~g~~~-----~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~ip 299 (450)
T PLN00093 228 EYYEDLAEMYVGDDVSPDFYGWVFPKC---DHVAVGTGTVV-----NKPAIKKYQRATRNRAKDKIAGGKIIRVEAHPIP 299 (450)
T ss_pred cccCCeEEEEeCCCCCCCceEEEEECC---CcEEEEEEEcc-----CCCChHHHHHHHHHHhhhhcCCCeEEEEEEEEcc
Confidence 01112222222 244455555443 12222221111 1112222333333222211111222222 2333
Q ss_pred ccceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCC---CchhhHhhHHHhhhHH
Q 008258 346 MHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI---APASILNTYETERKPI 416 (572)
Q Consensus 346 ~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~---~~~~~L~~Y~~eR~~~ 416 (572)
+ ....++. .+|++|+|||||.++|.+|+|++.||.++..+|+.++..++.. .....|+.|++..+..
T Consensus 300 ~--~~~~~~~--~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~ 369 (450)
T PLN00093 300 E--HPRPRRV--RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKK 369 (450)
T ss_pred c--cccccee--CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHH
Confidence 3 2334554 5899999999999999999999999999999999999877432 2356799999976654
No 48
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.97 E-value=1.5e-28 Score=249.13 Aligned_cols=289 Identities=18% Similarity=0.228 Sum_probs=180.7
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
+||+||||||+||++|+.|++.|++|+|+||++.+....++..+.+++++.+... +... +. .+....+ ..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~-~~-------~~~~~~~-~~ 70 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLP-LELI-VN-------LVRGARF-FS 70 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCC-chhh-hh-------heeeEEE-Ec
Confidence 5999999999999999999999999999999988776778888999999988765 4311 11 1111111 12
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
..++.+. .. ........++|..|++.|.+.+.+.|+ ++++++++++++.+
T Consensus 71 ~~~~~~~-~~----------~~~~~~~~i~r~~l~~~l~~~~~~~gv-------------------~~~~~~~v~~~~~~ 120 (295)
T TIGR02032 71 PNGDSVE-IP----------IETELAYVIDRDAFDEQLAERAQEAGA-------------------ELRLGTTVLDVEIH 120 (295)
T ss_pred CCCcEEE-ec----------cCCCcEEEEEHHHHHHHHHHHHHHcCC-------------------EEEeCcEEeeEEEe
Confidence 2333221 10 011224568999999999999988876 89999999999988
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEEEe
Q 008258 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFN 283 (572)
Q Consensus 204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 283 (572)
++++++++. ++ ..++++|+||+|||.+|.+|+.+++........ ......+..+. . ...+.....++.
T Consensus 121 ~~~~~~~~~---~~---~~~~~a~~vv~a~G~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~----~~~~~~~~~~~~ 188 (295)
T TIGR02032 121 DDRVVVIVR---GG---EGTVTAKIVIGADGSRSIVAKKLGLRKEPRELG-VAARAEVEMPD-E----EVDEDFVEVYID 188 (295)
T ss_pred CCEEEEEEc---Cc---cEEEEeCEEEECCCcchHHHHhcCCCCCCccee-eEEEEEEecCC-c----ccCcceEEEEcC
Confidence 888777664 22 237899999999999999999987654221111 11122222211 0 011111111111
Q ss_pred ----cCceEEEEEecCCCCeEEEEeecCCCCCCCCCCC-HHHHHHHHHHHhCCCCCceeEEEecCccccc-eeccccccc
Q 008258 284 ----TEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFS-PEICEKLIFKLVGWELSDIDVIDIKPWVMHA-EVAEKFLCC 357 (572)
Q Consensus 284 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~-~~a~~~~~~ 357 (572)
+....++++. ..+.+.+.+...++. ...+ .+.+.+.+..... ....++.+...|.+.. ....++.
T Consensus 189 ~~~~~~~~~~~~P~--~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~-- 259 (295)
T TIGR02032 189 RGISPGGYGWVFPK--GDGTANVGVGSRSAE---EGEDLKKYLKDFLARRPE--LKDAETVEVIGAPIPIGRPDDKTV-- 259 (295)
T ss_pred CCcCCCceEEEEeC--CCCeEEEeeeeccCC---CCCCHHHHHHHHHHhCcc--cccCcEEeeeceeeccCCCCCccc--
Confidence 1223333333 334455443322221 1122 2333444433211 1223344433443332 2334454
Q ss_pred CCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHH
Q 008258 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKI 393 (572)
Q Consensus 358 ~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~L 393 (572)
++||+|+|||||.++|..|||||+||+||..+|+.|
T Consensus 260 ~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 260 RGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred cCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 699999999999999999999999999999998764
No 49
>PRK11445 putative oxidoreductase; Provisional
Probab=99.96 E-value=1.6e-27 Score=247.77 Aligned_cols=308 Identities=20% Similarity=0.269 Sum_probs=178.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC----CCCCeeeeChhHHHHHHhhcchHHHHHhcCCCccccccee
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS----THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFI 119 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~----~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~ 119 (572)
+||+||||||+|+++|+.|++. ++|+|+||++... ..+++..++++++++|+++ |+.........+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~l-gl~~~~~~~~~~~------- 72 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKD-GLTLPKDVIANPQ------- 72 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHc-CCCCCcceeeccc-------
Confidence 6999999999999999999999 9999999998543 3457889999999999999 8742111000000
Q ss_pred eeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEE
Q 008258 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (572)
Q Consensus 120 ~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~ 199 (572)
......++.... ... .....++.++|..|++.|.+.+ +.|+ ++++++++++
T Consensus 73 ------~~~~~~~~~~~~--~~~-~~~~~~~~i~R~~~~~~L~~~~-~~gv-------------------~v~~~~~v~~ 123 (351)
T PRK11445 73 ------IFAVKTIDLANS--LTR-NYQRSYINIDRHKFDLWLKSLI-PASV-------------------EVYHNSLCRK 123 (351)
T ss_pred ------cceeeEeccccc--chh-hcCCCcccccHHHHHHHHHHHH-hcCC-------------------EEEcCCEEEE
Confidence 000011111000 000 0112245689999999988854 4455 8999999999
Q ss_pred EeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEE
Q 008258 200 VSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLF 279 (572)
Q Consensus 200 v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (572)
++++++++.+++. ++|+ ..+++||+||+|||++|.+|++++..... ..+.. +..++.... ..+ ...
T Consensus 124 i~~~~~~~~v~~~--~~g~--~~~i~a~~vV~AdG~~S~vr~~l~~~~~~-~~~~~-~~~~~~~~~-------~~~-~~~ 189 (351)
T PRK11445 124 IWREDDGYHVIFR--ADGW--EQHITARYLVGADGANSMVRRHLYPDHQI-RKYVA-IQQWFAEKH-------PVP-FYS 189 (351)
T ss_pred EEEcCCEEEEEEe--cCCc--EEEEEeCEEEECCCCCcHHhHHhcCCCch-hhEEE-EEEEecCCC-------CCC-Ccc
Confidence 9998888887763 2442 34689999999999999999998643211 11111 111111110 001 111
Q ss_pred EEEecCc-eEEEEEecCCCCeEEEEeecCCCCCCCCCCCHH---HHHHHHHHHhCCCCCceeEEEecCccccceeccccc
Q 008258 280 FIFNTEA-IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPE---ICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFL 355 (572)
Q Consensus 280 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~ 355 (572)
.+++++. .++.+..+. .+.+.+...+ +. .-..+ .+.+.+.+ .+...... +.....+.+.......+.
T Consensus 190 ~~f~~~~~~~~~W~~p~-~~~~~~g~~~-~~-----~~~~~~~~~l~~~l~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~ 260 (351)
T PRK11445 190 CIFDNEITDCYSWSISK-DGYFIFGGAY-PM-----KDGRERFETLKEKLSA-FGFQFGKP-VKTEACTVLRPSRWQDFV 260 (351)
T ss_pred eEEeccCCCceEEEeCC-CCcEEecccc-cc-----cchHHHHHHHHHHHHh-cccccccc-cccccccccCcccccccc
Confidence 1222221 111111111 1122111000 00 01111 12222222 22211111 001111111111122232
Q ss_pred ccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHH
Q 008258 356 CCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIA 417 (572)
Q Consensus 356 ~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a 417 (572)
..++||+|||||||.++|++|+|+|.||.|+..|++.|.+.. ...|+.|++..+...
T Consensus 261 ~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~-----~~~~~~y~~~~~~~~ 317 (351)
T PRK11445 261 CGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP-----EKLNTAYWRKTRKLR 317 (351)
T ss_pred cCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc-----cchHHHHHHHHHHHH
Confidence 224899999999999999999999999999999999997532 557999999887665
No 50
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.96 E-value=2.6e-26 Score=242.36 Aligned_cols=314 Identities=16% Similarity=0.157 Sum_probs=180.9
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
+||+||||||+|+++|+.|+++|++|+|+||++.. ..+++..++. +.|+++ |+.+.+.... . ..... .+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~-~~~cg~~i~~---~~l~~~-g~~~~~~~~~--i---~~~~~-~~ 69 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN-AKPCGGAIPL---CMVDEF-ALPRDIIDRR--V---TKMKM-IS 69 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC-CCCccccccH---hhHhhc-cCchhHHHhh--h---ceeEE-ec
Confidence 58999999999999999999999999999998643 3567777765 456677 7766554321 1 11111 11
Q ss_pred CCCCeeeeecCCCccccccccCCcc-ccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVS-VAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~-~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~ 202 (572)
..+..+ ..... ..+.. ...++|..|++.|.+++.+.|+ +++.++ +++++.
T Consensus 70 p~~~~~-~~~~~--------~~~~~~~~~v~R~~~d~~L~~~a~~~G~-------------------~v~~~~-~~~i~~ 120 (398)
T TIGR02028 70 PSNIAV-DIGRT--------LKEHEYIGMLRREVLDSFLRRRAADAGA-------------------TLINGL-VTKLSL 120 (398)
T ss_pred CCceEE-EeccC--------CCCCCceeeeeHHHHHHHHHHHHHHCCc-------------------EEEcce-EEEEEe
Confidence 122111 11000 00111 2358999999999999999887 676664 666642
Q ss_pred ---eCCeEEEEEEeccCC--ceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCce
Q 008258 203 ---TDQCINVIASFLKEG--KCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGM 277 (572)
Q Consensus 203 ---~~~~v~v~~~~~~~g--~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 277 (572)
.++.+.+++...+.+ ++++.+++||+||+|||++|.||+.+|.... .....+...+..+.. . ....+..
T Consensus 121 ~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~g~~~~---~~~~~~~~~~~~~~~-~--~~~~~~~ 194 (398)
T TIGR02028 121 PADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEIDAGDY---SYAIAFQERIRLPDE-K--MAYYDDL 194 (398)
T ss_pred ccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHhCCCCc---ceEEEEEEEeeCChh-h--cccCCCe
Confidence 234555665422110 1133479999999999999999999986421 111111111111100 0 0011122
Q ss_pred EEEEE----ecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCceeEEE--ecCccccceec
Q 008258 278 LFFIF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSDIDVID--IKPWVMHAEVA 351 (572)
Q Consensus 278 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~--~~~w~~~~~~a 351 (572)
..+++ .|+.++++++.. +...+.+.... .....+.+.+.++..........++.. ..++++. ..
T Consensus 195 ~~~~~g~~~~p~gY~WifP~~---~~~~VG~g~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ip~~--~~ 264 (398)
T TIGR02028 195 AEMYVGDDVSPDFYGWVFPKC---DHVAVGTGTVA-----AKPEIKRLQSGIRARAAGKVAGGRIIRVEAHPIPEH--PR 264 (398)
T ss_pred EEEEeCCCCCCCceEEEEECC---CeEEEEEEeCC-----CCccHHHHHHhhhhhhhhccCCCcEEEEEEEecccc--cc
Confidence 22222 244445555443 22223332111 111222333333332111111112222 2233332 23
Q ss_pred ccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCC---CchhhHhhHHHhhhH
Q 008258 352 EKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI---APASILNTYETERKP 415 (572)
Q Consensus 352 ~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~---~~~~~L~~Y~~eR~~ 415 (572)
+++. .+|++|+|||||.++|.+|+|++.||+++..+|+.++..++.. .....|..|++..+.
T Consensus 265 ~~~~--~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~ 329 (398)
T TIGR02028 265 PRRV--VGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDK 329 (398)
T ss_pred ccEE--CCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHH
Confidence 4444 5899999999999999999999999999999999999877533 246789999986654
No 51
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.94 E-value=2.4e-24 Score=227.42 Aligned_cols=317 Identities=20% Similarity=0.210 Sum_probs=194.7
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCe-eeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQA-HFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a-~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (572)
+++||+||||||||++||+.|++.|++|+|+||++.+...+++ ..+.++.++-+... ...+ +... . .....+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~-~~~~-i~~~---v--~~~~~~ 74 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPD-FDEE-IERK---V--TGARIY 74 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCC-cchh-hhee---e--eeeEEE
Confidence 4589999999999999999999999999999999999777766 78888887766432 2111 1111 1 111111
Q ss_pred eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (572)
Q Consensus 121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v 200 (572)
. . +..... . ......+.+.|..+++.|.+++++.|+ +++.++++..+
T Consensus 75 ~--~-~~~~~~---------~--~~~~~~y~v~R~~fd~~La~~A~~aGa-------------------e~~~~~~~~~~ 121 (396)
T COG0644 75 F--P-GEKVAI---------E--VPVGEGYIVDRAKFDKWLAERAEEAGA-------------------ELYPGTRVTGV 121 (396)
T ss_pred e--c-CCceEE---------e--cCCCceEEEEhHHhhHHHHHHHHHcCC-------------------EEEeceEEEEE
Confidence 1 1 211110 0 001224678999999999999999998 99999999999
Q ss_pred eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEE
Q 008258 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280 (572)
Q Consensus 201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (572)
..+++++.+.+. .+. .++++++||+|||++|.+++.++.......... .........+ .......++
T Consensus 122 ~~~~~~~~~~~~---~~~---~e~~a~~vI~AdG~~s~l~~~lg~~~~~~~~~~-~~~~e~~~~~------~~~~~~~~~ 188 (396)
T COG0644 122 IREDDGVVVGVR---AGD---DEVRAKVVIDADGVNSALARKLGLKDRKPEDYA-IGVKEVIEVP------DDGDVEEFL 188 (396)
T ss_pred EEeCCcEEEEEE---cCC---EEEEcCEEEECCCcchHHHHHhCCCCCChhhee-EEeEEEEecC------CCCceEEEE
Confidence 999988877776 332 479999999999999999999998721111111 1111111110 001111111
Q ss_pred EE----ecCceEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCCCCc-----eeEEEec--Cccccce
Q 008258 281 IF----NTEAIGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWELSD-----IDVIDIK--PWVMHAE 349 (572)
Q Consensus 281 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~i~~~~--~w~~~~~ 349 (572)
+. .|.+.+++++. ..+...+.+...... ....+. . +.++++...+... .++.... ..+....
T Consensus 189 ~~~~~~~~~Gy~wifP~--~~~~~~VG~g~~~~~---~~~~~~-~-~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~ 261 (396)
T COG0644 189 YGPLDVGPGGYGWIFPL--GDGHANVGIGVLLDD---PSLSPF-L-ELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGP 261 (396)
T ss_pred ecCCccCCCceEEEEEC--CCceEEEEEEEecCC---cCCCch-H-HHHHHHHhCcccchhccCCceEEEeeeecccCCc
Confidence 11 22233344333 234444444322111 111111 1 3344433222111 1222211 1222221
Q ss_pred ecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHH
Q 008258 350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTA 422 (572)
Q Consensus 350 ~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~ 422 (572)
....+. .++++|+||||..++|.+|.|+..||..|..+|+.|.....+. ...|..|+...+........
T Consensus 262 ~~~~~~--~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~--~~~l~~Y~~~~~~~~~~~~~ 330 (396)
T COG0644 262 ASRPLV--GDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG--EEALAEYERLLRKSLAREDL 330 (396)
T ss_pred CCCccc--cCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC--hhHHHHHHHHHHHHHHHHHH
Confidence 212133 5899999999999999999999999999999999999887554 66788898888766544333
No 52
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.94 E-value=2.7e-23 Score=219.37 Aligned_cols=354 Identities=16% Similarity=0.209 Sum_probs=193.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccc-eeeeeC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRK-FIYCTS 123 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~-~~~~~~ 123 (572)
||+||||||+|+++|+.|++.|++|+|||+.+... .+....++... ++.+ ++.+.+.. .|.. ..+. .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~-~~~~~~~~~~~---~~~~-~~~~~~~~------~~~~~~~~~-~ 68 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIP-GNHTYGVWDDD---LSDL-GLADCVEH------VWPDVYEYR-F 68 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC-CCccccccHhh---hhhh-chhhHHhh------cCCCceEEe-c
Confidence 89999999999999999999999999999987542 23333444332 3444 54332221 1221 1111 0
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
..... ..+..+..+++..|.+.|.+.+.+.|+ +++ ..++++++.+
T Consensus 69 ~~~~~---------------~~~~~~~~i~~~~l~~~l~~~~~~~gv-------------------~~~-~~~v~~i~~~ 113 (388)
T TIGR01790 69 PKQPR---------------KLGTAYGSVDSTRLHEELLQKCPEGGV-------------------LWL-ERKAIHAEAD 113 (388)
T ss_pred CCcch---------------hcCCceeEEcHHHHHHHHHHHHHhcCc-------------------EEE-ccEEEEEEec
Confidence 00000 012334568899999999999988776 554 4577888776
Q ss_pred -CCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEEE
Q 008258 204 -DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIF 282 (572)
Q Consensus 204 -~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 282 (572)
++.+.+++. +|. +++|++||+|||.+|.+++..... ...++......+...... . . .....++-+
T Consensus 114 ~~~~~~v~~~---~g~----~~~a~~VI~A~G~~s~~~~~~~~~---~~~~q~~~G~~~~~~~~~-~--~-~~~~~~~d~ 179 (388)
T TIGR01790 114 GVALSTVYCA---GGQ----RIQARLVIDARGFGPLVQYVRFPL---NVGFQVAYGVEARLSRPP-H--G-PSSMVIMDA 179 (388)
T ss_pred CCceeEEEeC---CCC----EEEeCEEEECCCCchhcccccCCC---CceEEEEEEEEEEEcCCC-C--C-CCceEEEec
Confidence 556666554 443 689999999999999776432111 112233333333221100 0 0 011111111
Q ss_pred ecC--------ceE--EEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHh---CCCCCceeEEEecCccccce
Q 008258 283 NTE--------AIG--VLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV---GWELSDIDVIDIKPWVMHAE 349 (572)
Q Consensus 283 ~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~i~~~~~w~~~~~ 349 (572)
... ... +++..+...+...+..... ......+.+.+.+.+.+.+ ++....+.......+++...
T Consensus 180 ~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~~~~~iP~~~~ 256 (388)
T TIGR01790 180 RVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSL---ADRPALPRDRLRQRILARLNAQGWQIKTIEEEEWGALPVGLP 256 (388)
T ss_pred cccccccccccCCCCceEEEeecCCCeEEEEeccc---cCCCCCCHHHHHHHHHHHHHHcCCeeeEEEeeeeEEEecccC
Confidence 000 000 1111221222221111100 0112345556666666544 44322222222222233322
Q ss_pred ecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258 350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQNFR 429 (572)
Q Consensus 350 ~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~ 429 (572)
.. +. .+||+++|||||.++|.+|+|++.++++|..||+.|++.++.. ...+++.|+...+++-.+..........
T Consensus 257 ~~--~~--~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (388)
T TIGR01790 257 GP--FL--PQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS-SELATAAWDGLWPTERRRQRYFRLLGRM 331 (388)
T ss_pred CC--cc--CCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 21 22 5899999999999999999999999999999999999887543 4678899976655544331111110000
Q ss_pred HhcccccccCCCccchhhhHHHhhcccCCCCcHHHHHHHHhhhhhhhhhHhhhhhccCCCcchH
Q 008258 430 AAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGS 493 (572)
Q Consensus 430 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~ 493 (572)
.. +. +.......+++.++.+....+.+|+-++.++...
T Consensus 332 ~l------~~--------------------~~~~~~~~~f~~~~~~~~~~~~~fl~~~~~~~~~ 369 (388)
T TIGR01790 332 LF------LA--------------------LEPEERRRFFQRFFGLPEELWERFLAARLSLPDL 369 (388)
T ss_pred HH------Hc--------------------CCHHHHHHHHHHHHCCCHHHHhhhhcCCCCHHHH
Confidence 00 11 1233355666777766666777777666655443
No 53
>PRK10015 oxidoreductase; Provisional
Probab=99.92 E-value=6.2e-23 Score=218.37 Aligned_cols=332 Identities=15% Similarity=0.183 Sum_probs=178.1
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC-CCeeeeChhHHHHHHhhcchHHHHHhcCCCccc--ccc
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-PQAHFINNRYALVFRKLDGLAEEIERSQPPVDL--WRK 117 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~-~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~--~~~ 117 (572)
+.++||+||||||||+++|+.|++.|++|+||||.+.+... .++..+...+++.+ ++++..+ .+.+. ...
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l--~~~~~~~-----~~i~~~~~~~ 75 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAI--IPGFAAS-----APVERKVTRE 75 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHH--ccccccc-----CCccccccce
Confidence 45699999999999999999999999999999998876443 23444555444433 1233211 11110 011
Q ss_pred eeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEE
Q 008258 118 FIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC 197 (572)
Q Consensus 118 ~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v 197 (572)
..+..+..+... ++.... ... ..+...+.+.|..|++.|.+.+.+.|+ +++.+++|
T Consensus 76 ~~~~~~~~~~~~--~~~~~~-~~~--~~~~~~~~v~R~~fd~~L~~~a~~~Gv-------------------~i~~~~~V 131 (429)
T PRK10015 76 KISFLTEESAVT--LDFHRE-QPD--VPQHASYTVLRNRLDPWLMEQAEQAGA-------------------QFIPGVRV 131 (429)
T ss_pred eEEEEeCCCceE--eecccC-CCC--CCCcCceEeehhHHHHHHHHHHHHcCC-------------------EEECCcEE
Confidence 111111111111 111000 000 112234678899999999999999887 88899999
Q ss_pred EEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEec---Cc-ccccc-cc
Q 008258 198 VSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLS---KD-LGDYL-LN 272 (572)
Q Consensus 198 ~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~---~~-l~~~~-~~ 272 (572)
+++..+++.++.... ++ .+++||+||+|||.+|.+++.+++...... ....+.+.... .+ ..... ..
T Consensus 132 ~~i~~~~~~v~~v~~---~~----~~i~A~~VI~AdG~~s~v~~~lg~~~~~~~-~~~~~gvk~~~~~~~~~i~~~~~~~ 203 (429)
T PRK10015 132 DALVREGNKVTGVQA---GD----DILEANVVILADGVNSMLGRSLGMVPASDP-HHYAVGVKEVIGLTPEQINDRFNIT 203 (429)
T ss_pred EEEEEeCCEEEEEEe---CC----eEEECCEEEEccCcchhhhcccCCCcCCCc-CeEEEEEEEEEeCCHHHhhHhhcCC
Confidence 998877666543322 22 268999999999999999999886432211 11122222111 01 00000 01
Q ss_pred CCCceEEEEE-ecCc----eEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHh--CCCCCceeEEEecCc-
Q 008258 273 ERPGMLFFIF-NTEA----IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLV--GWELSDIDVIDIKPW- 344 (572)
Q Consensus 273 ~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~i~~~~~w- 344 (572)
..++..+.++ .|.. .+++.... +...+.+...-........+.....+.+.+.. ......-+.......
T Consensus 204 ~~~g~~w~~~g~~~~g~~g~G~~~~~~---d~v~vGv~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~e~~~~~ 280 (429)
T PRK10015 204 GEEGAAWLFAGSPSDGLMGGGFLYTNK---DSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHM 280 (429)
T ss_pred CCCCeEEEecCccCCCCCCceEEEEcC---CcEEEEEEEehhhhccCCCCHHHHHHHHhhChHHHHHhcCCEEEEEeeEE
Confidence 1122222222 1111 22332221 22332221100000001122222222222110 000001122221111
Q ss_pred -cccc-eecccccccCCcEEEEecccccCCC--CCCCCchhHHHHHHHHHHHHHHHhc-CCCchhhHhhHHHhhhHH
Q 008258 345 -VMHA-EVAEKFLCCYNQIILAGDACHRFPP--AGGFGMNTGVQDAHNLAWKIASVLK-DIAPASILNTYETERKPI 416 (572)
Q Consensus 345 -~~~~-~~a~~~~~~~grV~LiGDAAH~~~P--~~G~G~n~ai~DA~~La~~La~~~~-g~~~~~~L~~Y~~eR~~~ 416 (572)
+... ...++.. .++++++||||..++| ..|.||+.||..+...|+.+...++ ++-+...|..|++.-+..
T Consensus 281 ip~gg~~~~~~~~--~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~~ 355 (429)
T PRK10015 281 VPEGGLAMVPQLV--NDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQS 355 (429)
T ss_pred cccCCcccCCccc--cCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHC
Confidence 1111 1122332 5899999999999985 6999999999999999999988875 444567789999876643
No 54
>PLN02697 lycopene epsilon cyclase
Probab=99.92 E-value=8.5e-22 Score=212.09 Aligned_cols=311 Identities=17% Similarity=0.271 Sum_probs=184.5
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (572)
...+||+||||||+||++|+.|++.|++|+|||+.... +..++++. +.++++ |+.+.+... |.....
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~---~~n~GvW~---~~l~~l-gl~~~i~~~------w~~~~v 172 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF---TNNYGVWE---DEFKDL-GLEDCIEHV------WRDTIV 172 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC---CCccccch---hHHHhc-CcHHHHHhh------cCCcEE
Confidence 45689999999999999999999999999999986332 23344543 356777 787655432 221111
Q ss_pred eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (572)
Q Consensus 121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v 200 (572)
.. ..++.+. ....+..++|..|.+.|++++.+.|+ ++ ++++|+++
T Consensus 173 ~~-~~~~~~~--------------~~~~Yg~V~R~~L~~~Ll~~a~~~GV-------------------~~-~~~~V~~I 217 (529)
T PLN02697 173 YL-DDDKPIM--------------IGRAYGRVSRTLLHEELLRRCVESGV-------------------SY-LSSKVDRI 217 (529)
T ss_pred Ee-cCCceee--------------ccCcccEEcHHHHHHHHHHHHHhcCC-------------------EE-EeeEEEEE
Confidence 11 1122110 01223468899999999999988776 55 67789999
Q ss_pred eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccc-cCcceEEEEEEecCccccccccCCCceEE
Q 008258 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGE-KDLQKLVSVHFLSKDLGDYLLNERPGMLF 279 (572)
Q Consensus 201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 279 (572)
+++++++.+... .+|. +++|++||+|||++|. +.++....+. ..++....+....... ...+...
T Consensus 218 ~~~~~~~~vv~~--~dG~----~i~A~lVI~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~-----~~d~~~~- 283 (529)
T PLN02697 218 TEASDGLRLVAC--EDGR----VIPCRLATVASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENN-----PYDPSLM- 283 (529)
T ss_pred EEcCCcEEEEEE--cCCc----EEECCEEEECCCcChh--hhhccccCCCCcccEEEEEEEEEecCC-----CCCcchh-
Confidence 887777654332 1442 6899999999999993 2333221111 2344444444432210 0111111
Q ss_pred EEEecCceEEE-E-EecCCCCeEEEEeecCCCCCCC--------CCCCHHHHHHHHHHHh---CCCCCceeEEEecCccc
Q 008258 280 FIFNTEAIGVL-V-AHDLKEGEFILQVPFYPPQQNL--------EDFSPEICEKLIFKLV---GWELSDIDVIDIKPWVM 346 (572)
Q Consensus 280 ~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~---~~~~~~~~i~~~~~w~~ 346 (572)
.+++-.....- . ..+.....|.|.+|+.+..-.. ...+.+.+++.+.+.+ |+....+........++
T Consensus 284 vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~~~~l~~~~l~~~L~~~l~~~Gi~~~~i~~~E~g~iPm 363 (529)
T PLN02697 284 VFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLASKDAMPFDLLKKRLMSRLETMGIRILKTYEEEWSYIPV 363 (529)
T ss_pred eeeccccccccccccccCCCceEEEEeecCCCeEEEEEeeeccCCCCCHHHHHHHHHHHHHhCCCCcceEEEEEeeeecC
Confidence 11110000000 0 0011123466667765442211 2234555555555544 43322332222233455
Q ss_pred cceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCC----------CchhhHhhHHHhhhHH
Q 008258 347 HAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI----------APASILNTYETERKPI 416 (572)
Q Consensus 347 ~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~----------~~~~~L~~Y~~eR~~~ 416 (572)
...... . .++++++||||+.++|.+|.|+..++.+|..+|..++..++.. .....++.|+......
T Consensus 364 ~g~~~~-~---~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e 439 (529)
T PLN02697 364 GGSLPN-T---EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQE 439 (529)
T ss_pred CCCCcc-c---CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHH
Confidence 432222 2 3799999999999999999999999999999999999988533 2356788887766554
Q ss_pred H
Q 008258 417 A 417 (572)
Q Consensus 417 a 417 (572)
.
T Consensus 440 ~ 440 (529)
T PLN02697 440 R 440 (529)
T ss_pred H
Confidence 4
No 55
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.91 E-value=7.2e-23 Score=213.54 Aligned_cols=339 Identities=13% Similarity=0.171 Sum_probs=190.3
Q ss_pred CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCC--cccccceee
Q 008258 45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPP--VDLWRKFIY 120 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~--~~~~~~~~~ 120 (572)
||+|||||||||++|+.|++. |++|+|+|+.+..... +... +-.. ++.+.+...-.+ ...|.....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~-~tw~--------~~~~-~~~~~~~~~~~~~v~~~W~~~~v 70 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN-HTWS--------FFDS-DLSDAQHAWLADLVQTDWPGYEV 70 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc-ccce--------eccc-ccchhhhhhhhhhheEeCCCCEE
Confidence 899999999999999999987 9999999997643210 1111 1111 222211110000 012222211
Q ss_pred eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (572)
Q Consensus 121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v 200 (572)
....... .-+..+..+.+.+|.+.|++.+.. .++++.+|+++
T Consensus 71 ~~~~~~~----------------~l~~~Y~~I~r~~f~~~l~~~l~~----------------------~i~~~~~V~~v 112 (370)
T TIGR01789 71 RFPKYRR----------------KLKTAYRSMTSTRFHEGLLQAFPE----------------------GVILGRKAVGL 112 (370)
T ss_pred ECcchhh----------------hcCCCceEEEHHHHHHHHHHhhcc----------------------cEEecCEEEEE
Confidence 1100000 012334678888998888765522 36778889888
Q ss_pred eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEE
Q 008258 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFF 280 (572)
Q Consensus 201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 280 (572)
+ +++|+ +. +|. +++|++||+|||.+|..... ..+|.+..+...... . + ....+..+-+
T Consensus 113 ~--~~~v~--l~---dg~----~~~A~~VI~A~G~~s~~~~~--------~~~Q~f~G~~~r~~~-p-~-~~~~~~lMD~ 170 (370)
T TIGR01789 113 D--ADGVD--LA---PGT----RINARSVIDCRGFKPSAHLK--------GGFQVFLGREMRLQE-P-H-GLENPIIMDA 170 (370)
T ss_pred e--CCEEE--EC---CCC----EEEeeEEEECCCCCCCcccc--------ceeeEEEEEEEEEcC-C-C-CCCccEEEee
Confidence 3 45544 33 454 68999999999999752211 245666655544321 0 1 1111111111
Q ss_pred EEecCceEEEEEecCCCCeEEEEeecCCCCC--------CCCCCCHHHHHHHHHHHh---CCCCCceeEEEecCccccc-
Q 008258 281 IFNTEAIGVLVAHDLKEGEFILQVPFYPPQQ--------NLEDFSPEICEKLIFKLV---GWELSDIDVIDIKPWVMHA- 348 (572)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~---~~~~~~~~i~~~~~w~~~~- 348 (572)
... .....+|.+.+|+.+... .....+.+.+.+.+.+.+ ++....+...+....++..
T Consensus 171 ~~~----------q~~g~~F~Y~lP~~~~~~lvE~T~~s~~~~l~~~~l~~~l~~~~~~~g~~~~~i~~~e~g~iPm~~~ 240 (370)
T TIGR01789 171 TVD----------QLAGYRFVYVLPLGSHDLLIEDTYYADDPLLDRNALSQRIDQYARANGWQNGTPVRHEQGVLPVLLG 240 (370)
T ss_pred ecc----------CCCCceEEEECcCCCCeEEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCCceEEEEeeeeEEeeecC
Confidence 110 011234555555443321 113345666665565543 4443333222322233322
Q ss_pred -eecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHH
Q 008258 349 -EVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTALSVQN 427 (572)
Q Consensus 349 -~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~ 427 (572)
.....|.. +++|+++|||||.++|.+|||++.+++||..|+..+. +++.....++..|..+|+++..+..-.
T Consensus 241 ~~~~~~~~~-~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 313 (370)
T TIGR01789 241 GDFSAYQDE-VRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPD--LSSEQLAAFIDSRARRHWSKTGYYRLL---- 313 (370)
T ss_pred CCccccccc-CCceeeeecccccccccccccHHHHHHHHHHHHhccC--cCccchhhhhhHHHHHHHHHhHHHHHH----
Confidence 12222332 4679999999999999999999999999999998774 123233456789999888777532111
Q ss_pred HHHhcccccccCCCccchhhhHHHhhcccCCCCcHHHHHHHHhhhhhhhhhHhhhhhccCCCcchHHH
Q 008258 428 FRAAMEVPSALGLDPTIANSVHQLINRVAGSVLPSVLQKALLEGIFKVGRAQLSESLLNESNPLGSSR 495 (572)
Q Consensus 428 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~r 495 (572)
++.+...-++.....+++++|.+....+.+|+-++.+.....|
T Consensus 314 -------------------------~~~ll~~~~~~~~~~~f~~~f~l~~~~~~rFl~~~~~~~~~~~ 356 (370)
T TIGR01789 314 -------------------------NRMLFFAAKPEKRVRVFQRFYGLREGLIERFYAARSNTFDKLR 356 (370)
T ss_pred -------------------------HHHHhccCCchhHHHHHHHHhCCCHHHHHHHHhcCCCHHHHHH
Confidence 1111111234456788899998888888888888777655444
No 56
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.91 E-value=3.2e-23 Score=205.88 Aligned_cols=354 Identities=19% Similarity=0.272 Sum_probs=197.6
Q ss_pred cCCCCCCCCCCcccccCCC-CccCCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCC--CC-------CCCeeee
Q 008258 22 PYGYTQCRALSDSKTIVSN-EAVVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAF--ST-------HPQAHFI 87 (572)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~-~~~~dVlIVGaGpaGL~~A~~La~~----Gi~v~viEr~~~~--~~-------~~~a~~l 87 (572)
++.+++....+......+. ...+||+||||||+|+++|..|... ..+|.|+|-...+ .. .-+-..+
T Consensus 14 ~v~~t~~~~~~~~~s~~~~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~ 93 (481)
T KOG3855|consen 14 AVRYTQRLDTRRTASAKSTDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSI 93 (481)
T ss_pred ccccccccccccccccccCCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecC
Confidence 4556665555444333333 3479999999999999999999864 5789999987332 11 1244668
Q ss_pred ChhHHHHHHhhcchHHHHHhc-CCCcccccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHH-HH
Q 008258 88 NNRYALVFRKLDGLAEEIERS-QPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLK-QL 165 (572)
Q Consensus 88 ~~rt~e~l~~l~Gl~~~l~~~-~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~-~~ 165 (572)
++++...|+.+ |.||.+... ..+...+ ++| .+.....+ . +..... ..+.. +.+.-..+...|+. .+
T Consensus 94 s~~s~~~fk~~-~awd~i~~~R~~~~~~~--~v~-Ds~s~a~I---~-~~~d~~---~~d~a-~iien~nIq~sL~~s~~ 161 (481)
T KOG3855|consen 94 SPASISLFKSI-GAWDHIFHDRYQKFSRM--LVW-DSCSAALI---L-FDHDNV---GIDMA-FIIENDNIQCSLYNSQL 161 (481)
T ss_pred CcchHHHHHhc-CHHHHhhhhccccccce--eee-cccchhhh---h-hccccc---cccce-eeeehhHHHHHHHHHHH
Confidence 89999999999 999987653 2222111 111 11111111 0 000000 01111 22222233444443 22
Q ss_pred HhcCceeeccCCcccccccccccceEEeccEEEEEee------eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258 166 EKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA------TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (572)
Q Consensus 166 ~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~------~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V 239 (572)
.+. .++++|....++..+.. ++.+-...+.- .+|. .+.+|+||||||.+|.|
T Consensus 162 ~s~-----------------~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l-~dg~----~~~~~LLigAdg~Ns~v 219 (481)
T KOG3855|consen 162 DSE-----------------SDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITL-TDGI----NFATDLLIGADGFNSVV 219 (481)
T ss_pred hhh-----------------cCceeeecccceeeeccccccCCCCCcceEEEEe-ccCc----eeeeceeeccccccchh
Confidence 111 13456777776665543 23333333321 1453 68999999999999999
Q ss_pred hhhcCCccccccCcceEEEEEE-ecCccccccccCCCceEEEEEecCceEEEEEecCCCCeEEEEeec--------CCCC
Q 008258 240 RKLVGIDLVGEKDLQKLVSVHF-LSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPF--------YPPQ 310 (572)
Q Consensus 240 R~~lg~~~~g~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 310 (572)
|+..++.+.+..+.+..+.... ...+ ...++..+.-|-|.+...+.+.......++|...- .|++
T Consensus 220 R~~snid~~~~ny~~havVAtl~l~~~------~~~~~~AwQRFlP~GpiAllpl~d~~s~LvWSts~~~a~~L~~lp~e 293 (481)
T KOG3855|consen 220 RKASNIDVASWNYDQHAVVATLKLEEE------AILNGVAWQRFLPTGPIALLPLSDTLSSLVWSTSPENASILKSLPEE 293 (481)
T ss_pred hhhcCCCcccccccceeeeEEEEeccc------ccccchhHHhcCCCCceeecccccccccceeecCHHHHHHHhcCCch
Confidence 9999999888776554433222 1111 11222333334444322222222222344443210 0110
Q ss_pred C-------------CCCCC--CHHHHH-------HHHHHHhC------CCCCceeEEE--ecCccccceecccccccCCc
Q 008258 311 Q-------------NLEDF--SPEICE-------KLIFKLVG------WELSDIDVID--IKPWVMHAEVAEKFLCCYNQ 360 (572)
Q Consensus 311 ~-------------~~~~~--~~~~~~-------~~l~~~~~------~~~~~~~i~~--~~~w~~~~~~a~~~~~~~gr 360 (572)
+ ....+ +..... +.+....+ .++.-+++.+ ...+++.-..++.|. ..|
T Consensus 294 ~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FPLgf~ha~~yV--~~~ 371 (481)
T KOG3855|consen 294 RFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFEVGDKSRAQFPLGFGHADEYV--TDR 371 (481)
T ss_pred hHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccCCeEEEecccceeecccccccHHHhc--CCc
Confidence 0 00000 000000 01111111 1111123332 224677778888897 699
Q ss_pred EEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc-CC--CchhhHhhHHHhhhHHH
Q 008258 361 IILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK-DI--APASILNTYETERKPIA 417 (572)
Q Consensus 361 V~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~-g~--~~~~~L~~Y~~eR~~~a 417 (572)
+.|+|||||+++|..|||.|++..|+..|...|..++. |. .+..-|+.|+.+|.+.-
T Consensus 372 ~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~~~N 431 (481)
T KOG3855|consen 372 VALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYERERLQHN 431 (481)
T ss_pred hhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccchhhhhHHHHHHhhhc
Confidence 99999999999999999999999999999999998763 33 34567999999997654
No 57
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.91 E-value=3.7e-22 Score=212.58 Aligned_cols=331 Identities=17% Similarity=0.207 Sum_probs=178.6
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC-CeeeeChhHHHHHHhhcchHHHHHhcCCCccc---cc
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP-QAHFINNRYALVFRKLDGLAEEIERSQPPVDL---WR 116 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~-~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~---~~ 116 (572)
+.++||+||||||||+++|+.|+++|++|+||||.+.+.... .+..+...+++.+ ++.+. .. .+.+. ..
T Consensus 3 ~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l--~~~~~----~~-~~~~~~~~~~ 75 (428)
T PRK10157 3 EDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHI--IPGFA----DS-APVERLITHE 75 (428)
T ss_pred cccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHH--hhhhh----hc-Ccccceeeee
Confidence 456999999999999999999999999999999998765432 3334555444432 11121 11 11110 01
Q ss_pred ceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccE
Q 008258 117 KFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHE 196 (572)
Q Consensus 117 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~ 196 (572)
...+ .+..+... .+....... ..+...+.+.|..|++.|.+.+.+.|+ +++.+++
T Consensus 76 ~~~~-~~~~~~~~--~~~~~~~~~---~~~~~~~~v~R~~fD~~L~~~a~~~Gv-------------------~i~~~~~ 130 (428)
T PRK10157 76 KLAF-MTEKSAMT--MDYCNGDET---SPSQRSYSVLRSKFDAWLMEQAEEAGA-------------------QLITGIR 130 (428)
T ss_pred eEEE-EcCCCcee--ecccccccc---CCCCCceeeEHHHHHHHHHHHHHHCCC-------------------EEECCCE
Confidence 1111 11122211 111100000 112224567899999999999999887 8899999
Q ss_pred EEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEec--C-c-c-ccccc
Q 008258 197 CVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLS--K-D-L-GDYLL 271 (572)
Q Consensus 197 v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~--~-~-l-~~~~~ 271 (572)
|++++.+++.+.+... ++. +++|++||+|||++|.+++.+|+...-. ..+..+.+.... + + . ..+..
T Consensus 131 V~~i~~~~g~v~~v~~---~g~----~i~A~~VI~A~G~~s~l~~~lgl~~~~~-~~~~av~~~~~~~~~~~~~~~~~~~ 202 (428)
T PRK10157 131 VDNLVQRDGKVVGVEA---DGD----VIEAKTVILADGVNSILAEKLGMAKRVK-PTDVAVGVKELIELPKSVIEDRFQL 202 (428)
T ss_pred EEEEEEeCCEEEEEEc---CCc----EEECCEEEEEeCCCHHHHHHcCCCCCCC-CcEEEEEEEEEEEcCHHHHHHhhcc
Confidence 9999877766543322 332 6899999999999999999988653211 112222222111 0 0 0 00111
Q ss_pred cCCCceEE-EEEecCc----eEEEEEecCCCCeEEEEeecCCCCCCCCCCCHHHHHHHHHHHhCCC--CCceeEEEecCc
Q 008258 272 NERPGMLF-FIFNTEA----IGVLVAHDLKEGEFILQVPFYPPQQNLEDFSPEICEKLIFKLVGWE--LSDIDVIDIKPW 344 (572)
Q Consensus 272 ~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~~~~~w 344 (572)
...++..+ +...|.. .+++.. + .....+.+............+...+.+.+.+..... ...-+......+
T Consensus 203 ~~~~g~~~~~~g~~~~g~~ggG~~~~-~--~~~~svG~~~~~~~~~~~~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~ 279 (428)
T PRK10157 203 QGNQGAACLFAGSPTDGLMGGGFLYT-N--ENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAH 279 (428)
T ss_pred CCCCCeEEEEEECCCCCCcCceeEEE-c--CCeEEEEEEEehHHhcccCCCHHHHHHHHHhCchHHHHhCCCeEHHHHhh
Confidence 11222222 2222221 122222 1 122222221110000011123333333332211100 000111111111
Q ss_pred ccc--c-eecccccccCCcEEEEecccccCCC--CCCCCchhHHHHHHHHHHHHHHHhc-CCCchhhHhhHHHhhhHH
Q 008258 345 VMH--A-EVAEKFLCCYNQIILAGDACHRFPP--AGGFGMNTGVQDAHNLAWKIASVLK-DIAPASILNTYETERKPI 416 (572)
Q Consensus 345 ~~~--~-~~a~~~~~~~grV~LiGDAAH~~~P--~~G~G~n~ai~DA~~La~~La~~~~-g~~~~~~L~~Y~~eR~~~ 416 (572)
.+. . ...++.. .++++++||||..++| +.|.|++.||..+..+|+.+.+.++ ++.....|..|++.-+..
T Consensus 280 ~ip~~g~~~~~~~~--~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~ 355 (428)
T PRK10157 280 VVPEAGINMLPELV--GDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESG 355 (428)
T ss_pred HhhcCCcccCCcee--cCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHh
Confidence 111 0 1112222 5899999999999998 5899999999999999999988775 344556899999866544
No 58
>PLN02463 lycopene beta cyclase
Probab=99.89 E-value=1.7e-20 Score=199.24 Aligned_cols=311 Identities=16% Similarity=0.188 Sum_probs=181.6
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (572)
...+||+|||||||||++|+.|++.|++|+|||+.+... .++...++ .+.++++ |+.+.+.... +. ..++
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~-~p~~~g~w---~~~l~~l-gl~~~l~~~w-~~----~~v~ 95 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSI-WPNNYGVW---VDEFEAL-GLLDCLDTTW-PG----AVVY 95 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccch-hccccchH---HHHHHHC-CcHHHHHhhC-CC----cEEE
Confidence 456899999999999999999999999999999976432 23333222 3567777 8887765422 11 0111
Q ss_pred eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (572)
Q Consensus 121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v 200 (572)
..+.... .....+..++|..|.+.|++++.+.|+ +++ ..+|+++
T Consensus 96 ~~~~~~~----------------~~~~~y~~V~R~~L~~~Ll~~~~~~GV-------------------~~~-~~~V~~I 139 (447)
T PLN02463 96 IDDGKKK----------------DLDRPYGRVNRKKLKSKMLERCIANGV-------------------QFH-QAKVKKV 139 (447)
T ss_pred EeCCCCc----------------cccCcceeEEHHHHHHHHHHHHhhcCC-------------------EEE-eeEEEEE
Confidence 1111100 011224567899999999999988776 554 4688999
Q ss_pred eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCc-eEE
Q 008258 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPG-MLF 279 (572)
Q Consensus 201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~ 279 (572)
+++++++.|++. +|. +++||+||+|||.+|.+++.-. .....++....+....... ...+. +.+
T Consensus 140 ~~~~~~~~V~~~---dG~----~i~A~lVI~AdG~~s~l~~~~~---~~~~g~Q~a~Gi~~ev~~~-----p~d~~~~vl 204 (447)
T PLN02463 140 VHEESKSLVVCD---DGV----KIQASLVLDATGFSRCLVQYDK---PFNPGYQVAYGILAEVDSH-----PFDLDKMLF 204 (447)
T ss_pred EEcCCeEEEEEC---CCC----EEEcCEEEECcCCCcCccCCCC---CCCccceeeeeEEeecCCC-----Ccccccchh
Confidence 988888877775 553 6999999999999998765311 1223344444333221110 00011 100
Q ss_pred EEEecCceEE---EEEecCCCCeEEEEeecCCCCC--------CCCCCCHHHHHHHHHHHh---CCCCCceeEEEecCcc
Q 008258 280 FIFNTEAIGV---LVAHDLKEGEFILQVPFYPPQQ--------NLEDFSPEICEKLIFKLV---GWELSDIDVIDIKPWV 345 (572)
Q Consensus 280 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~---~~~~~~~~i~~~~~w~ 345 (572)
+-+.....+. +...+.....|.+.+|+.+..- .....+.+.+++.+.+.+ |.....+........+
T Consensus 205 MD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s~~~~~~~~lk~~L~~~l~~~Gi~~~~i~~~E~~~IP 284 (447)
T PLN02463 205 MDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLVARPGLPMDDIQERMVARLRHLGIKVKSVEEDEKCVIP 284 (447)
T ss_pred hhcChhhccccchhhhccCCCCceEEEEecCCCeEEEEeeeeecCCCCCHHHHHHHHHHHHHHCCCCcceeeeeeeeEee
Confidence 0000000000 0000000123555566544321 112334455555555543 3322222222222234
Q ss_pred ccceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCc---------h---hhHhhHHHhh
Q 008258 346 MHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAP---------A---SILNTYETER 413 (572)
Q Consensus 346 ~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~---------~---~~L~~Y~~eR 413 (572)
+... .+.+ .+||+++||||..++|.+|.|+-.++..+..+|+.++..++.... . ..|..|+..|
T Consensus 285 mg~~-~~~~---~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~lw~~~~~~ 360 (447)
T PLN02463 285 MGGP-LPVI---PQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSSRSNSFRGDELSAEVWNDLWPIERRR 360 (447)
T ss_pred CCCC-CCCC---CCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhcCCCcCCChHHHHHHHHHHhCCHhHhH
Confidence 4332 1222 479999999999999999999999999999999999998864322 1 3566666655
Q ss_pred hHH
Q 008258 414 KPI 416 (572)
Q Consensus 414 ~~~ 416 (572)
+..
T Consensus 361 ~~~ 363 (447)
T PLN02463 361 QRE 363 (447)
T ss_pred hHH
Confidence 543
No 59
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.87 E-value=3.2e-20 Score=182.59 Aligned_cols=353 Identities=18% Similarity=0.177 Sum_probs=201.0
Q ss_pred CCCcccccCCCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcC
Q 008258 30 ALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQ 109 (572)
Q Consensus 30 ~~~~~~~~~~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~ 109 (572)
...+-+...+.+..+||+|||||.+|.++|..|+|.|-+|.||||+-.-.++--+..++|.+...|.+| |+.|.++..-
T Consensus 32 ~~~~~~~~~~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~L-Gl~Dcve~ID 110 (509)
T KOG1298|consen 32 NVAETSVEARNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKL-GLEDCVEGID 110 (509)
T ss_pred ccchhhhhhccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHh-CHHHHhhccc
Confidence 334434445667789999999999999999999999999999999866555556788999999999999 9999987643
Q ss_pred CCcccccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccc
Q 008258 110 PPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGR 189 (572)
Q Consensus 110 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 189 (572)
... .....++ .+|+... ... ...++.. ......+.-.++.+-|++.+... |++
T Consensus 111 AQ~-v~Gy~if---k~gk~v~-~py-P~~~f~~---d~~GrsFhnGRFvq~lR~ka~sl------------------pNV 163 (509)
T KOG1298|consen 111 AQR-VTGYAIF---KDGKEVD-LPY-PLKNFPS---DPSGRSFHNGRFVQRLRKKAASL------------------PNV 163 (509)
T ss_pred ceE-eeeeEEE---eCCceee-ccC-CCcCCCC---CcccceeeccHHHHHHHHHHhcC------------------CCe
Confidence 221 1111112 2454332 111 1112221 11234455667888888887554 444
Q ss_pred eEEeccEEEEEeeeCCeEE-EEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCcccc
Q 008258 190 EILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGD 268 (572)
Q Consensus 190 ~i~~g~~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~ 268 (572)
++..|+ |.++-++++.|+ |+.. +.+ +++.+..|.+-|.|||..|..|+.+--+...+ -...++..-....+
T Consensus 164 ~~eeGt-V~sLlee~gvvkGV~yk--~k~-gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~~-V~S~fVG~vl~N~~--- 235 (509)
T KOG1298|consen 164 RLEEGT-VKSLLEEEGVVKGVTYK--NKE-GEEVEAFAPLTVVCDGCFSNLRRSLCDPKVEE-VPSYFVGLVLKNCR--- 235 (509)
T ss_pred EEeeee-HHHHHhccCeEEeEEEe--cCC-CceEEEecceEEEecchhHHHHHHhcCCcccc-cchheeeeeecCCC---
Confidence 555443 333333333222 2333 222 24467889999999999999999984321110 11122222222222
Q ss_pred ccccCCCceEEEEEecCceEEEEEecCCCCeEEEEeecC--CCCC-----------CCCCCCHHHHHHHHHHHhCCCCCc
Q 008258 269 YLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFY--PPQQ-----------NLEDFSPEICEKLIFKLVGWELSD 335 (572)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~ 335 (572)
.+.|+..+.++..-...++........+..+.+|-. |+.. -.+..++ .+.+.+.+.+.. ..
T Consensus 236 ---l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~Psi~~gem~~~mk~~v~PqiP~-~lR~~F~~av~~--g~ 309 (509)
T KOG1298|consen 236 ---LPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPSIANGEMATYMKESVAPQIPE-KLRESFLEAVDE--GN 309 (509)
T ss_pred ---CCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCCcccchhHHHHHHHhhCcCCCH-HHHHHHHHHhhc--cc
Confidence 123444444444322233333332223333333210 0000 0011111 122222222211 11
Q ss_pred eeEEEecCccccceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc---CCCchhhHhhHHHh
Q 008258 336 IDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK---DIAPASILNTYETE 412 (572)
Q Consensus 336 ~~i~~~~~w~~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~---g~~~~~~L~~Y~~e 412 (572)
++... -....+... ....++|+|||-..-+|.+|.||..++.|...|-+.|.-+.+ .....+.+.+|..+
T Consensus 310 irsmp-----n~~mpa~~~--~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl~dL~d~ekv~~~i~sFy~~ 382 (509)
T KOG1298|consen 310 IRSMP-----NSSMPATLN--DKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPLPDLSDAEKVSDYIKSFYWI 382 (509)
T ss_pred hhcCc-----cccCCCCcC--CCCceEEEcccccccCCccCCceEeehhHHHHHHHHhccccccccHHHHHHHHHHHHHh
Confidence 11111 111112222 257899999999999999999999999999999888865321 11224678899999
Q ss_pred hhHHHHHhHHHHHHHHHHh
Q 008258 413 RKPIAEFNTALSVQNFRAA 431 (572)
Q Consensus 413 R~~~a~~~~~~s~~~~~~~ 431 (572)
|+|.+..+..++...++.+
T Consensus 383 RKp~s~tINtLa~Aly~vf 401 (509)
T KOG1298|consen 383 RKPYSATINTLANALYQVF 401 (509)
T ss_pred hcchhHHHHHHHHHHHHHh
Confidence 9999877766666555444
No 60
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.85 E-value=8.8e-19 Score=183.52 Aligned_cols=275 Identities=16% Similarity=0.263 Sum_probs=159.1
Q ss_pred CEEEECCCHHHHHHHHHH--HhCCCCEEEEcCCCCCC-CCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeee
Q 008258 45 PVLIVGAGPVGLVLSILL--TKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~L--a~~Gi~v~viEr~~~~~-~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~ 121 (572)
||+|||||||||++|..| ++.|.+|+|||+.+... ...+...... ..+ +..+.+... .|......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~------~~~-~~~~~~v~~-----~w~~~~v~ 68 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWE------KDL-GPLDSLVSH-----RWSGWRVY 68 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCccccccc------ccc-cchHHHHhe-----ecCceEEE
Confidence 899999999999999999 88899999999987651 1111211211 111 212233222 22221111
Q ss_pred eCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258 122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (572)
Q Consensus 122 ~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~ 201 (572)
. ..+... .....+..+++.+|.+.|.+++.. +. .++++.+|++++
T Consensus 69 ~-~~~~~~--------------~~~~~Y~~i~~~~f~~~l~~~~~~-~~-------------------~~~~~~~V~~i~ 113 (374)
T PF05834_consen 69 F-PDGSRI--------------LIDYPYCMIDRADFYEFLLERAAA-GG-------------------VIRLNARVTSIE 113 (374)
T ss_pred e-CCCceE--------------EcccceEEEEHHHHHHHHHHHhhh-CC-------------------eEEEccEEEEEE
Confidence 1 111110 111345678999999999999883 32 677889999999
Q ss_pred eeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEE
Q 008258 202 ATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFI 281 (572)
Q Consensus 202 ~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 281 (572)
.+++++.+++. +|. +++|++||+|+|..|...+.. .+|.+..+...... ..+ ....+..+-|.
T Consensus 114 ~~~~~~~v~~~---~g~----~i~a~~VvDa~g~~~~~~~~~--------~~Q~f~G~~v~~~~-~~f-~~~~~~lMD~r 176 (374)
T PF05834_consen 114 ETGDGVLVVLA---DGR----TIRARVVVDARGPSSPKARPL--------GLQHFYGWEVETDE-PVF-DPDTATLMDFR 176 (374)
T ss_pred ecCceEEEEEC---CCC----EEEeeEEEECCCccccccccc--------ccceeEEEEEeccC-CCC-CCCceEEEEec
Confidence 99887777765 664 799999999999777622222 24555555443321 000 01111111111
Q ss_pred EecCceEEEEEecCCCCeEEEEeecCCCCC--------CCCCCCHHHHHHHHHHH---hCCCCCceeEEEecCccccc-e
Q 008258 282 FNTEAIGVLVAHDLKEGEFILQVPFYPPQQ--------NLEDFSPEICEKLIFKL---VGWELSDIDVIDIKPWVMHA-E 349 (572)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~---~~~~~~~~~i~~~~~w~~~~-~ 349 (572)
.... .....|.+.+|+.+..- .....+.+.+.+.+.+. .|.....+.-......++.. .
T Consensus 177 ~~~~---------~~~~~F~Y~lP~~~~~alvE~T~fs~~~~~~~~~~~~~l~~~l~~~g~~~~~i~~~E~G~IPm~~~~ 247 (374)
T PF05834_consen 177 VPQS---------ADGPSFLYVLPFSEDRALVEETSFSPRPALPEEELKARLRRYLERLGIDDYEILEEERGVIPMTTGG 247 (374)
T ss_pred ccCC---------CCCceEEEEEEcCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHHHcCCCceeEEEeecceeecccCC
Confidence 1100 01234555555543321 11224555555555544 35544333333333455521 2
Q ss_pred ecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHH
Q 008258 350 VAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIAS 395 (572)
Q Consensus 350 ~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~ 395 (572)
..... .++++.+|+||+.++|.+|.++-.++..|..+|..|..
T Consensus 248 ~~~~~---~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 248 FPPRF---GQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred Ccccc---CCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 22222 47899999999999999999888888888877777764
No 61
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.83 E-value=1.3e-18 Score=185.93 Aligned_cols=333 Identities=17% Similarity=0.227 Sum_probs=177.1
Q ss_pred CEEEECCCHHHHHHHHHHHhCC---CCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHH--HHhcCCCcc------
Q 008258 45 PVLIVGAGPVGLVLSILLTKLG---IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEE--IERSQPPVD------ 113 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~G---i~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~--l~~~~~~~~------ 113 (572)
||+|||||+||.++|..|++.+ ++|+|||+...+.. +-+....|....+++.+ |+.+. +.+.....+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~-~vGe~~~p~~~~~~~~l-gi~e~~~~~~~~~~~k~g~~f~ 78 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRI-GVGESTLPSLRPFLRRL-GIDEADFMRACDATFKLGIRFV 78 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS----SSEEE--THHHHCHHHH-T--HHHHCHHCT-EEESEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCC-CccccchHHHHHHHHHc-CCChHHHHHHhCCeEeccEEee
Confidence 6999999999999999999998 99999999876643 34556777788899999 99877 444433221
Q ss_pred cccc--eeeee--CCCCCeeeeecC---------C-Ccc---------------cccc----ccC-CccccccChhhHHH
Q 008258 114 LWRK--FIYCT--SVTGPILGSVDH---------M-QPQ---------------DFEK----VVS-PVSVAHFSQYKLNK 159 (572)
Q Consensus 114 ~~~~--~~~~~--~~~G~~~~~~~~---------~-~~~---------------~~~~----~~s-p~~~~~l~q~~L~~ 159 (572)
.|.. ..+.. ...|..+...+. . ... .+.. ... ....+|++|..+++
T Consensus 79 ~w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~ 158 (454)
T PF04820_consen 79 NWGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQ 158 (454)
T ss_dssp SSSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHH
T ss_pred ecCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHH
Confidence 1221 00110 011111111100 0 000 0000 011 11248899999999
Q ss_pred HHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258 160 LLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (572)
Q Consensus 160 ~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V 239 (572)
.|++.+.+.|+ +++.+ +|++++.++++....+... +|. +++||++|+|+|.+|.+
T Consensus 159 ~L~~~A~~~Gv-------------------~~~~g-~V~~v~~~~~g~i~~v~~~-~g~----~i~ad~~IDASG~~s~L 213 (454)
T PF04820_consen 159 FLRRHAEERGV-------------------EVIEG-TVVDVELDEDGRITAVRLD-DGR----TIEADFFIDASGRRSLL 213 (454)
T ss_dssp HHHHHHHHTT--------------------EEEET--EEEEEE-TTSEEEEEEET-TSE----EEEESEEEE-SGGG-CC
T ss_pred HHHHHHhcCCC-------------------EEEeC-EEEEEEEcCCCCEEEEEEC-CCC----EEEEeEEEECCCccchh
Confidence 99999999998 66666 4777777766654445422 442 79999999999999998
Q ss_pred hhh-cCCccccccCcc---eEEEEEEecCccccccccCCCceEEEEEecCceEEEEEecCCCCeEEEEeecCCCCCCCCC
Q 008258 240 RKL-VGIDLVGEKDLQ---KLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVPFYPPQQNLED 315 (572)
Q Consensus 240 R~~-lg~~~~g~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (572)
.++ ++.++.....+. ..+.++....+ ...+... ....+.++.+.++...+ ... .+-+.. ..
T Consensus 214 ~~~~L~~~~~~~~~~L~~d~av~~~~~~~~------~~~~~T~-~~a~~~GW~W~IPL~~~--~~~-G~V~s~-----~~ 278 (454)
T PF04820_consen 214 ARKALKVGFRDWSDWLPNDRAVAVQVPNED------PPEPYTR-STAFEAGWIWYIPLQNR--RGS-GYVYSS-----DF 278 (454)
T ss_dssp CCCCT-EEEEEETTTCEEEEEEEEEEE-SS------CTTSSEE-EEEESSEEEEEEEESSE--EEE-EEEEET-----TT
T ss_pred hHhhhcCCCccccccccccEEEEEecCcCC------CCCCcee-EEecCCceEEEccCCCc--ceE-EEEecc-----cc
Confidence 776 444433322221 12222222111 1112211 11222322233333221 111 111111 12
Q ss_pred CCHHHHHHHHHHHhCCCCCce-eEEEecCccccceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHH
Q 008258 316 FSPEICEKLIFKLVGWELSDI-DVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIA 394 (572)
Q Consensus 316 ~~~~~~~~~l~~~~~~~~~~~-~i~~~~~w~~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La 394 (572)
.+++...+.+.+.++...... ..+..... ...++. .+|+++|||||..++|..+.|+.+++..+..|+..|.
T Consensus 279 ~s~~~A~~~l~~~l~~~~~~~~~~i~~~~g-----~~~~~~--~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~ 351 (454)
T PF04820_consen 279 ISDDEAEAELLAYLGGSPEAEPRHIRFRSG-----RRKQFW--GKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALP 351 (454)
T ss_dssp SHHHHHHHHHHHHHTCHCTTSCEEEE-S-E-----EESSSE--ETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHhcchhhhcchhhhccccc-----chhhcc--cCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcc
Confidence 244444444444444322111 22222111 123332 4899999999999999999999999997777777665
Q ss_pred HHhcCCCchhhHhhHHHhhhHHHHHhHHHHHHHHH
Q 008258 395 SVLKDIAPASILNTYETERKPIAEFNTALSVQNFR 429 (572)
Q Consensus 395 ~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~ 429 (572)
. +...+.+++.|++..+...+.+.+.-...|.
T Consensus 352 ~---~~~~~~~~~~Yn~~~~~~~~~~~~fi~~hY~ 383 (454)
T PF04820_consen 352 D---DDFSPAALDRYNRRMRREYERIRDFISLHYQ 383 (454)
T ss_dssp C---TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3 3444789999999998888777666555554
No 62
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.47 E-value=6.3e-13 Score=131.47 Aligned_cols=144 Identities=19% Similarity=0.281 Sum_probs=95.2
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--CCe-----eeeChhHHHHHHhhcchHHHHHhcCCCcc
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--PQA-----HFINNRYALVFRKLDGLAEEIERSQPPVD 113 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~--~~a-----~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~ 113 (572)
..++||+||||||+||++|+.|++.|++|+|+||.+.+... +.+ ..+...+.++|+++ |+ +..
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~-gv---------~~~ 92 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEF-GI---------RYK 92 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHC-CC---------Cce
Confidence 34689999999999999999999999999999998765321 111 12223333444443 32 110
Q ss_pred cccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEe
Q 008258 114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM 193 (572)
Q Consensus 114 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~ 193 (572)
. . ....+.+++..+...|.+.+.+.|+ ++++
T Consensus 93 ---~-----~----------------------~~g~~~vd~~~l~~~L~~~A~~~Gv-------------------~I~~ 123 (257)
T PRK04176 93 ---E-----V----------------------EDGLYVADSVEAAAKLAAAAIDAGA-------------------KIFN 123 (257)
T ss_pred ---e-----e----------------------cCcceeccHHHHHHHHHHHHHHcCC-------------------EEEc
Confidence 0 0 0001335677888899999998887 8888
Q ss_pred ccEEEEEeeeCC-eEE-EEEEec---cCC-ceeeEEEEecEEEeecCCChhhhhhc
Q 008258 194 GHECVSVSATDQ-CIN-VIASFL---KEG-KCTERNIQCNILIGTDGAGSTVRKLV 243 (572)
Q Consensus 194 g~~v~~v~~~~~-~v~-v~~~~~---~~g-~~~~~~i~ad~vVgADG~~S~VR~~l 243 (572)
+++++++..+++ .+. +.+... ..+ .....+++|++||.|+|.+|.+.+.+
T Consensus 124 ~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l 179 (257)
T PRK04176 124 GVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL 179 (257)
T ss_pred CceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence 888888876555 332 111100 011 11245799999999999999998877
No 63
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.42 E-value=2.2e-12 Score=127.19 Aligned_cols=143 Identities=18% Similarity=0.260 Sum_probs=92.9
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC--Ce-----eeeChhHHHHHHhhcchHHHHHhcCCCccc
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP--QA-----HFINNRYALVFRKLDGLAEEIERSQPPVDL 114 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~--~a-----~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~ 114 (572)
.++||+||||||+||++|+.|+++|.+|+|+||...+.... .+ ..+...+.++++++ |+ +...
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~-gi---------~~~~ 89 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEF-GI---------RYED 89 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHC-CC---------Ceee
Confidence 46899999999999999999999999999999998653111 11 11222233333333 22 1000
Q ss_pred ccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEec
Q 008258 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (572)
Q Consensus 115 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g 194 (572)
. ....+..++..+...|.+++.+.|+ +++++
T Consensus 90 ----------~--------------------~~g~~~~~~~el~~~L~~~a~e~GV-------------------~I~~~ 120 (254)
T TIGR00292 90 ----------E--------------------GDGYVVADSAEFISTLASKALQAGA-------------------KIFNG 120 (254)
T ss_pred ----------c--------------------cCceEEeeHHHHHHHHHHHHHHcCC-------------------EEECC
Confidence 0 0001223566888889999988887 88899
Q ss_pred cEEEEEeeeCCe--EEEEEEe-c---cCC-ceeeEEEEecEEEeecCCChhhhhhc
Q 008258 195 HECVSVSATDQC--INVIASF-L---KEG-KCTERNIQCNILIGTDGAGSTVRKLV 243 (572)
Q Consensus 195 ~~v~~v~~~~~~--v~v~~~~-~---~~g-~~~~~~i~ad~vVgADG~~S~VR~~l 243 (572)
++++++..+++. +.-.+.. . ..| .....+++|++||.|+|..|.+.+.+
T Consensus 121 t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 121 TSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred cEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 999998876662 3221110 0 011 11245899999999999999887765
No 64
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.41 E-value=5.9e-12 Score=122.52 Aligned_cols=189 Identities=20% Similarity=0.175 Sum_probs=108.9
Q ss_pred ecEEEeecCCChhhhhhcCCccccccCcceEEEEEEecCccccccccCCCceEEEEEecCceEEEEEecCCCCeEEEEee
Q 008258 226 CNILIGTDGAGSTVRKLVGIDLVGEKDLQKLVSVHFLSKDLGDYLLNERPGMLFFIFNTEAIGVLVAHDLKEGEFILQVP 305 (572)
Q Consensus 226 ad~vVgADG~~S~VR~~lg~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (572)
|.+.|.|||..|.+|+++... -......++.......+ -+.++..+.+..+....++........+..+.+|
T Consensus 2 A~LtivaDG~~S~fRk~l~~~--~~~v~S~fvGl~l~~~~------lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp 73 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELSDN--KPQVRSYFVGLILKDAP------LPKPNHGHVILGKPGPILLYQISSNETRVLVDVP 73 (276)
T ss_pred CCEEEEecCCchHHHHhhcCC--CCceeeeEEEEEEcCCC------CCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeC
Confidence 679999999999999998721 12223345555443332 2234445555544443444444433344444444
Q ss_pred cC-CCCCCCCCCC-----------HHHHHHHHHHHhCCCCCceeEEEecCccccceecccccccCCcEEEEecccccCCC
Q 008258 306 FY-PPQQNLEDFS-----------PEICEKLIFKLVGWELSDIDVIDIKPWVMHAEVAEKFLCCYNQIILAGDACHRFPP 373 (572)
Q Consensus 306 ~~-~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~~~grV~LiGDAAH~~~P 373 (572)
-. .|...-.++. ++.+++.+.+.+.. ..+.....+.+ .+.... ..+++++|||++..+|
T Consensus 74 ~~k~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~--~rirsMPn~~l-----p~~~~~--~~G~vllGDA~nmrHP 144 (276)
T PF08491_consen 74 GPKLPSVSNGELKEYLREVVAPQLPEELRPSFEKALED--GRIRSMPNSFL-----PASPNW--KPGVVLLGDAANMRHP 144 (276)
T ss_pred CCccCCccchHHHHHHHHHHHhhchHHHHHHHHHHhcc--CCcceeccccc-----CCCCCC--CCCEEEEehhhcCcCC
Confidence 22 1110000000 11122222222221 12222211111 122222 4789999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHH--hcC-CCchhhHhhHHHhhhHHHHHhHHHHHHHHHHh
Q 008258 374 AGGFGMNTGVQDAHNLAWKIASV--LKD-IAPASILNTYETERKPIAEFNTALSVQNFRAA 431 (572)
Q Consensus 374 ~~G~G~n~ai~DA~~La~~La~~--~~g-~~~~~~L~~Y~~eR~~~a~~~~~~s~~~~~~~ 431 (572)
.+|+||+.|+.|+..|++.|... +.+ .+..+++++|+.+|++....+.-++...+..+
T Consensus 145 LTGgGMTVAl~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF 205 (276)
T PF08491_consen 145 LTGGGMTVALNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLF 205 (276)
T ss_pred ccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 99999999999999999999876 211 12356899999999999987777777666554
No 65
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.30 E-value=9.4e-12 Score=125.51 Aligned_cols=157 Identities=23% Similarity=0.308 Sum_probs=98.0
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC------CCCeeeeChh-HHHHHHhhcchHHHHHh---cCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAHFINNR-YALVFRKLDGLAEEIER---SQPP 111 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~------~~~a~~l~~r-t~e~l~~l~Gl~~~l~~---~~~~ 111 (572)
+.+||+|||||||||++|+.++++|.+|+|||+.+.+.. .++.-+.|.. .-+++...||=...+.. .-.|
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 458999999999999999999999999999999987632 2232233322 23444444322122211 1111
Q ss_pred cccccceeeeeCCCCCeeeeecCCCccccccccCCccccc-cChhhHHHHHHHHHHhcCceeeccCCcccccccccccce
Q 008258 112 VDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAH-FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGRE 190 (572)
Q Consensus 112 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~-l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 190 (572)
.+... |. ...|-.+..-+ +..-+.. -.-..+.+.|+.++++.|+ +
T Consensus 82 ~d~i~---~~-e~~Gi~~~e~~-----------~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV-------------------~ 127 (408)
T COG2081 82 EDFID---WV-EGLGIALKEED-----------LGRMFPDSDKASPIVDALLKELEALGV-------------------T 127 (408)
T ss_pred HHHHH---HH-HhcCCeeEEcc-----------CceecCCccchHHHHHHHHHHHHHcCc-------------------E
Confidence 11100 00 01111111100 0000001 1234677889999999987 9
Q ss_pred EEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258 191 ILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (572)
Q Consensus 191 i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V 239 (572)
++.+++|.+++.++++..++.. +|. +++||-||-|-|..|.=
T Consensus 128 i~~~~~v~~v~~~~~~f~l~t~---~g~----~i~~d~lilAtGG~S~P 169 (408)
T COG2081 128 IRTRSRVSSVEKDDSGFRLDTS---SGE----TVKCDSLILATGGKSWP 169 (408)
T ss_pred EEecceEEeEEecCceEEEEcC---CCC----EEEccEEEEecCCcCCC
Confidence 9999999999998877777664 553 79999999999999853
No 66
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.27 E-value=4.7e-10 Score=118.08 Aligned_cols=70 Identities=24% Similarity=0.283 Sum_probs=51.8
Q ss_pred cChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEe
Q 008258 152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIG 231 (572)
Q Consensus 152 l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVg 231 (572)
++-..+.+.|.+.+.+.|+ +++++++|++++.+++.+++++. ++ +++||.||.
T Consensus 142 i~p~~~~~~l~~~~~~~g~-------------------~~~~~~~V~~i~~~~~~~~v~~~---~~-----~i~a~~vV~ 194 (380)
T TIGR01377 142 LYAEKALRALQELAEAHGA-------------------TVRDGTKVVEIEPTELLVTVKTT---KG-----SYQANKLVV 194 (380)
T ss_pred EcHHHHHHHHHHHHHHcCC-------------------EEECCCeEEEEEecCCeEEEEeC---CC-----EEEeCEEEE
Confidence 3445677778888877776 88899999999988777766543 33 588998888
Q ss_pred ecCCC-hhhhhhcCCccc
Q 008258 232 TDGAG-STVRKLVGIDLV 248 (572)
Q Consensus 232 ADG~~-S~VR~~lg~~~~ 248 (572)
|.|.. |.+++.+++...
T Consensus 195 aaG~~~~~l~~~~g~~~~ 212 (380)
T TIGR01377 195 TAGAWTSKLLSPLGIEIP 212 (380)
T ss_pred ecCcchHHHhhhcccCCC
Confidence 88875 668887775543
No 67
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.22 E-value=1.8e-10 Score=106.62 Aligned_cols=143 Identities=17% Similarity=0.255 Sum_probs=92.7
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC--CCC-----eeeeChhHHHHHHhhcchHHHHHhcCCCccc
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST--HPQ-----AHFINNRYALVFRKLDGLAEEIERSQPPVDL 114 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~--~~~-----a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~ 114 (572)
.+.||+||||||+||++|+.|++.|++|+|+||+-.+.- .+. ...+...+-++|+++ |+. .+.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~-gI~---------ye~ 98 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEF-GIR---------YEE 98 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHh-CCc---------cee
Confidence 357999999999999999999999999999999877632 111 245566777888877 542 100
Q ss_pred ccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEec
Q 008258 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (572)
Q Consensus 115 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g 194 (572)
. .+| ++..+-..+...|..++.+.|+ +|.-+
T Consensus 99 ~--------e~g----------------------~~v~ds~e~~skl~~~a~~aGa-------------------ki~n~ 129 (262)
T COG1635 99 E--------EDG----------------------YYVADSAEFASKLAARALDAGA-------------------KIFNG 129 (262)
T ss_pred c--------CCc----------------------eEEecHHHHHHHHHHHHHhcCc-------------------eeeec
Confidence 0 011 1223345666678888888887 66666
Q ss_pred cEEEEEeeeCC-eEEEEEEe-----ccCCceeeEEEEecEEEeecCCChhhhhhc
Q 008258 195 HECVSVSATDQ-CINVIASF-----LKEGKCTERNIQCNILIGTDGAGSTVRKLV 243 (572)
Q Consensus 195 ~~v~~v~~~~~-~v~v~~~~-----~~~g~~~~~~i~ad~vVgADG~~S~VR~~l 243 (572)
+.++++...++ +|.-.+.. ...-.-.+.++++++||.|.|--..|-+.+
T Consensus 130 ~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 130 VSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred ceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHH
Confidence 67776655544 33322110 000011234799999999999877765544
No 68
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.22 E-value=2e-10 Score=107.07 Aligned_cols=142 Identities=18% Similarity=0.229 Sum_probs=85.6
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--C-----CeeeeChhHHHHHHhhcchHHHHHhcCCCcc
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--P-----QAHFINNRYALVFRKLDGLAEEIERSQPPVD 113 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~--~-----~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~ 113 (572)
..++||+||||||+||++|+.|++.|++|+|+||+..+... . ....++..+.++|+++ |+.- +
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~el-gi~y---------~ 84 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDEL-GIPY---------E 84 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHH-T------------E
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhC-Ccee---------E
Confidence 34689999999999999999999999999999998776321 1 1255677788888888 6521 0
Q ss_pred cccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEe
Q 008258 114 LWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILM 193 (572)
Q Consensus 114 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~ 193 (572)
.. ...++..+-.++...|..++.+.|+ ++.-
T Consensus 85 ~~------------------------------~~g~~v~d~~~~~s~L~s~a~~aGa-------------------kifn 115 (230)
T PF01946_consen 85 EY------------------------------GDGYYVADSVEFTSTLASKAIDAGA-------------------KIFN 115 (230)
T ss_dssp E-------------------------------SSEEEES-HHHHHHHHHHHHHTTTE-------------------EEEE
T ss_pred Ee------------------------------CCeEEEEcHHHHHHHHHHHHhcCCC-------------------EEEe
Confidence 00 0012234455677778888877887 6666
Q ss_pred ccEEEEEeeeC-CeEEEEEEe-c---cCC-ceeeEEEEecEEEeecCCChhhhh
Q 008258 194 GHECVSVSATD-QCINVIASF-L---KEG-KCTERNIQCNILIGTDGAGSTVRK 241 (572)
Q Consensus 194 g~~v~~v~~~~-~~v~v~~~~-~---~~g-~~~~~~i~ad~vVgADG~~S~VR~ 241 (572)
.+.++++.-.+ +.|.-.+.. . ..| .-.+.+++|++||+|.|-.+.|-+
T Consensus 116 ~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~~ 169 (230)
T PF01946_consen 116 LTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVVR 169 (230)
T ss_dssp TEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSSTS
T ss_pred eeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHHH
Confidence 67777766555 443322210 0 011 113458999999999997776543
No 69
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.20 E-value=7.9e-09 Score=112.71 Aligned_cols=178 Identities=17% Similarity=0.170 Sum_probs=98.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCCCeeeeChhHHHHHHhhc-chHH-------HHHhcCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLD-GLAE-------EIERSQPP 111 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~-~~~~a~~l~~rt~e~l~~l~-Gl~~-------~l~~~~~~ 111 (572)
+.++||+|||||++|+++|+.|+++|++|+||||..... ..++...+-..+.+.+.... .+.. .+....+.
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap~ 83 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAPH 83 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCCc
Confidence 456899999999999999999999999999999985332 12222222222333333210 1111 11121211
Q ss_pred cccccceeeeeCCCC--Ce-----------------e---eeecCCC-----c--cccccccCCccccccChhhHHHHHH
Q 008258 112 VDLWRKFIYCTSVTG--PI-----------------L---GSVDHMQ-----P--QDFEKVVSPVSVAHFSQYKLNKLLL 162 (572)
Q Consensus 112 ~~~~~~~~~~~~~~G--~~-----------------~---~~~~~~~-----~--~~~~~~~sp~~~~~l~q~~L~~~L~ 162 (572)
......+....+... .. + ..++... + ..+.... .+....++...|...|.
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~-~~~dg~vd~~rl~~~l~ 162 (502)
T PRK13369 84 IIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGF-EYSDCWVDDARLVVLNA 162 (502)
T ss_pred cccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEE-EEcCeeecHHHHHHHHH
Confidence 100000110000000 00 0 0000000 0 0000000 01112355677777788
Q ss_pred HHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh-hhh
Q 008258 163 KQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST-VRK 241 (572)
Q Consensus 163 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~-VR~ 241 (572)
..+.+.|+ +++.+++|+++..+++.+.+++.. +.+++++++|++||.|+|++|. +.+
T Consensus 163 ~~a~~~Ga-------------------~i~~~~~V~~i~~~~~~~~v~~~~---~~g~~~~i~a~~VVnAaG~wa~~l~~ 220 (502)
T PRK13369 163 LDAAERGA-------------------TILTRTRCVSARREGGLWRVETRD---ADGETRTVRARALVNAAGPWVTDVIH 220 (502)
T ss_pred HHHHHCCC-------------------EEecCcEEEEEEEcCCEEEEEEEe---CCCCEEEEEecEEEECCCccHHHHHh
Confidence 88888887 889999999998887777777662 2234568999999999999885 444
No 70
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.17 E-value=3.1e-09 Score=111.67 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=33.4
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
++||+|||||++|+++|+.|++.|.+|+||||....
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~ 38 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPP 38 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence 489999999999999999999999999999998643
No 71
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.17 E-value=5.9e-09 Score=110.86 Aligned_cols=36 Identities=42% Similarity=0.573 Sum_probs=32.8
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhC-CC-CEEEEcCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKL-GI-KCSVLEKNK 76 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~-Gi-~v~viEr~~ 76 (572)
...+||+|||||++|+++|+.|+++ |. +|+|+||..
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 5668999999999999999999995 96 899999975
No 72
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.13 E-value=4.3e-10 Score=118.20 Aligned_cols=141 Identities=21% Similarity=0.346 Sum_probs=76.9
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC------CCCeeeeC----------------hhHHHHHHhhcch
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAHFIN----------------NRYALVFRKLDGL 101 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~------~~~a~~l~----------------~rt~e~l~~l~Gl 101 (572)
|||+|||||||||+||+.|++.|.+|+|+||.+.+.. .++.-..| ......|+++ +.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f-~~ 79 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF-SP 79 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS--H
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcC-CH
Confidence 6999999999999999999999999999999987631 12222222 1112333333 22
Q ss_pred H---HHHHhcCCCcccccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCc
Q 008258 102 A---EEIERSQPPVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGT 178 (572)
Q Consensus 102 ~---~~l~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~ 178 (572)
. +-+.+.+.+.. ...+|+.. |. .-.-..+...|++.+.+.|+
T Consensus 80 ~d~~~ff~~~Gv~~~--------~~~~gr~f----------------P~---s~~a~~Vv~~L~~~l~~~gv-------- 124 (409)
T PF03486_consen 80 EDLIAFFEELGVPTK--------IEEDGRVF----------------PK---SDKASSVVDALLEELKRLGV-------- 124 (409)
T ss_dssp HHHHHHHHHTT--EE--------E-STTEEE----------------ET---T--HHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHhcCCeEE--------EcCCCEEC----------------CC---CCcHHHHHHHHHHHHHHcCC--------
Confidence 2 22223322211 01122211 11 11234677889999999887
Q ss_pred ccccccccccceEEeccEEEEEeeeCCe-EEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258 179 EGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (572)
Q Consensus 179 ~~~~~~~~~~~~i~~g~~v~~v~~~~~~-v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~ 238 (572)
+++++++|.+++.++++ ..|+.. ++ .++.||.||-|.|..|.
T Consensus 125 -----------~i~~~~~V~~i~~~~~~~f~v~~~---~~----~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 125 -----------EIHFNTRVKSIEKKEDGVFGVKTK---NG----GEYEADAVILATGGKSY 167 (409)
T ss_dssp -----------EEE-S--EEEEEEETTEEEEEEET---TT----EEEEESEEEE----SSS
T ss_pred -----------EEEeCCEeeeeeecCCceeEeecc---Cc----ccccCCEEEEecCCCCc
Confidence 99999999999988877 555441 23 27899999999998884
No 73
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.12 E-value=1.2e-08 Score=108.52 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecC
Q 008258 155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDG 234 (572)
Q Consensus 155 ~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG 234 (572)
..+...|.+.+.+.|+ +++++++|++++.+++.+++.+.. ++..+..+++||.||.|.|
T Consensus 197 ~~~~~~l~~~a~~~G~-------------------~i~~~~~V~~i~~~~~~~~v~~~~--~~~~~~~~i~a~~vV~a~G 255 (410)
T PRK12409 197 HKFTTGLAAACARLGV-------------------QFRYGQEVTSIKTDGGGVVLTVQP--SAEHPSRTLEFDGVVVCAG 255 (410)
T ss_pred HHHHHHHHHHHHhCCC-------------------EEEcCCEEEEEEEeCCEEEEEEEc--CCCCccceEecCEEEECCC
Confidence 4566677888888887 889999999999888877766542 2110112589999999999
Q ss_pred CChh-hhhhcCC
Q 008258 235 AGST-VRKLVGI 245 (572)
Q Consensus 235 ~~S~-VR~~lg~ 245 (572)
+.|. +.+.++.
T Consensus 256 ~~s~~l~~~~~~ 267 (410)
T PRK12409 256 VGSRALAAMLGD 267 (410)
T ss_pred cChHHHHHHhCC
Confidence 9975 4444443
No 74
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.11 E-value=2.8e-09 Score=106.94 Aligned_cols=58 Identities=19% Similarity=0.066 Sum_probs=45.6
Q ss_pred cEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCc--hhh--HhhHHHhhhHHH
Q 008258 360 QIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAP--ASI--LNTYETERKPIA 417 (572)
Q Consensus 360 rV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~--~~~--L~~Y~~eR~~~a 417 (572)
.=+|||=+|..++---=-|..+||......|+.+-..+++.+. ... +.+|+..-+.--
T Consensus 385 GG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~ 446 (621)
T KOG2415|consen 385 GGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSY 446 (621)
T ss_pred CceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhH
Confidence 3378999999999888899999999999999999888876542 222 448988766543
No 75
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.11 E-value=4.2e-08 Score=107.05 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=49.7
Q ss_pred cChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEe
Q 008258 152 FSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIG 231 (572)
Q Consensus 152 l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVg 231 (572)
++-..|...|.+.+.+.|+ +++.+++|+++..+++.+.+++.+..+| +..+++|+.||.
T Consensus 152 vd~~rl~~~l~~~A~~~Ga-------------------~i~~~~~V~~i~~~~~~~~v~~~~~~~g--~~~~i~a~~VVn 210 (508)
T PRK12266 152 VDDARLVVLNARDAAERGA-------------------EILTRTRVVSARRENGLWHVTLEDTATG--KRYTVRARALVN 210 (508)
T ss_pred cCHHHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEEeCCEEEEEEEEcCCC--CEEEEEcCEEEE
Confidence 4445666667777778776 8899999999988777777776632233 345799999999
Q ss_pred ecCCChh
Q 008258 232 TDGAGST 238 (572)
Q Consensus 232 ADG~~S~ 238 (572)
|+|+.|.
T Consensus 211 AaG~wa~ 217 (508)
T PRK12266 211 AAGPWVK 217 (508)
T ss_pred CCCccHH
Confidence 9999874
No 76
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.10 E-value=2.5e-09 Score=113.21 Aligned_cols=69 Identities=17% Similarity=0.286 Sum_probs=53.1
Q ss_pred ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEE
Q 008258 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI 230 (572)
Q Consensus 151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vV 230 (572)
.++...+.+.|.+.+.+.|+ ++++++++++++.+++++.++.. ++ +++||.||
T Consensus 145 ~vd~~~l~~aL~~~~~~~Gv-------------------~i~~~~~V~~i~~~~~~~~V~~~---~g-----~i~ad~vV 197 (393)
T PRK11728 145 IVDYRAVAEAMAELIQARGG-------------------EIRLGAEVTALDEHANGVVVRTT---QG-----EYEARTLI 197 (393)
T ss_pred EECHHHHHHHHHHHHHhCCC-------------------EEEcCCEEEEEEecCCeEEEEEC---CC-----EEEeCEEE
Confidence 44556788888888888887 88999999999887777655442 33 58999999
Q ss_pred eecCCChh-hhhhcCCc
Q 008258 231 GTDGAGST-VRKLVGID 246 (572)
Q Consensus 231 gADG~~S~-VR~~lg~~ 246 (572)
.|+|.+|. +.+.+|.+
T Consensus 198 ~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 198 NCAGLMSDRLAKMAGLE 214 (393)
T ss_pred ECCCcchHHHHHHhCCC
Confidence 99999984 56666643
No 77
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.08 E-value=1.1e-08 Score=110.63 Aligned_cols=76 Identities=20% Similarity=0.214 Sum_probs=54.3
Q ss_pred ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeC-CeEEEEEEeccCCceeeEEEEecEE
Q 008258 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD-QCINVIASFLKEGKCTERNIQCNIL 229 (572)
Q Consensus 151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~-~~v~v~~~~~~~g~~~~~~i~ad~v 229 (572)
.++-..+...|.+.+.+.|+ +++++++|++++.++ +++++++...++| ...+++||+|
T Consensus 174 ~Vdp~~l~~aL~~~a~~~Gv-------------------~i~~~t~V~~i~~~~~~~v~v~~~~~~~g--~~~~i~A~~V 232 (483)
T TIGR01320 174 DVDFGALTKQLLGYLVQNGT-------------------TIRFGHEVRNLKRQSDGSWTVTVKNTRTG--GKRTLNTRFV 232 (483)
T ss_pred EECHHHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEEcCCCeEEEEEeeccCC--ceEEEECCEE
Confidence 45667788888898888887 899999999998865 4566665422233 2236899998
Q ss_pred EeecCC-ChhhhhhcCCcc
Q 008258 230 IGTDGA-GSTVRKLVGIDL 247 (572)
Q Consensus 230 VgADG~-~S~VR~~lg~~~ 247 (572)
|.|-|. .+.+++.+|+..
T Consensus 233 V~AAG~~s~~La~~~Gi~~ 251 (483)
T TIGR01320 233 FVGAGGGALPLLQKSGIPE 251 (483)
T ss_pred EECCCcchHHHHHHcCCCc
Confidence 555555 555888888764
No 78
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.05 E-value=4.1e-09 Score=113.08 Aligned_cols=154 Identities=19% Similarity=0.173 Sum_probs=89.4
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcch-----------HHHHHhcCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGL-----------AEEIERSQP 110 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl-----------~~~l~~~~~ 110 (572)
...+|+||||||+||++|..|++.|++|+|+||.+.. ++....++++-. +.+ ++ .+.+... .
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~v---GG~W~~~~~~~~--d~~-~~~~~~~~~~s~~Y~~L~tn-~ 81 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQV---GGLWVYTPKSES--DPL-SLDPTRSIVHSSVYESLRTN-L 81 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCC---cceeecCCCcCC--Ccc-ccCCCCcccchhhhhhhhcc-C
Confidence 3478999999999999999999999999999998765 222222222100 001 11 1111110 0
Q ss_pred CcccccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccce
Q 008258 111 PVDLWRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGRE 190 (572)
Q Consensus 111 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 190 (572)
|.+.+ ...+......+.. .......-.+...+.+.|.+.++..|+ ...
T Consensus 82 p~~~m--------------~f~dfp~~~~~~~-~~~~~~~fp~~~ev~~YL~~~a~~fgl-----------------~~~ 129 (461)
T PLN02172 82 PRECM--------------GYRDFPFVPRFDD-ESRDSRRYPSHREVLAYLQDFAREFKI-----------------EEM 129 (461)
T ss_pred CHhhc--------------cCCCCCCCccccc-ccCcCCCCCCHHHHHHHHHHHHHHcCC-----------------cce
Confidence 00000 0000000000000 000000112345678888888888876 124
Q ss_pred EEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258 191 ILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (572)
Q Consensus 191 i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S 237 (572)
|+++++|++++..++.++|++.. +.....+..+|.||.|.|..+
T Consensus 130 I~~~t~V~~V~~~~~~w~V~~~~---~~~~~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 130 VRFETEVVRVEPVDGKWRVQSKN---SGGFSKDEIFDAVVVCNGHYT 173 (461)
T ss_pred EEecCEEEEEeecCCeEEEEEEc---CCCceEEEEcCEEEEeccCCC
Confidence 89999999999888888888762 211233567999999999765
No 79
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.05 E-value=3.8e-09 Score=114.60 Aligned_cols=149 Identities=15% Similarity=0.171 Sum_probs=85.7
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC-CCCCCCe---eeeC-hhHHHHHHhhcchHHHHHh-cCCCccc
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA-FSTHPQA---HFIN-NRYALVFRKLDGLAEEIER-SQPPVDL 114 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~-~~~~~~a---~~l~-~rt~e~l~~l~Gl~~~l~~-~~~~~~~ 114 (572)
+.++||+||||||||+.+|+.+++.|.+|+|||++.. +...++. .++. ....+-++.++|+...+.. .+.+.
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~-- 79 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQF-- 79 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCce--
Confidence 3469999999999999999999999999999998752 2111111 1111 1112333444333222221 11110
Q ss_pred ccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEec
Q 008258 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (572)
Q Consensus 115 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g 194 (572)
.......|... .++ ...+++..+...|.+.+.+.+ ++++ +.
T Consensus 80 ----r~ln~skGpAV--------------~s~--RaQiDr~ly~kaL~e~L~~~~------------------nV~I-~q 120 (618)
T PRK05192 80 ----RMLNTSKGPAV--------------RAL--RAQADRKLYRAAMREILENQP------------------NLDL-FQ 120 (618)
T ss_pred ----eecccCCCCce--------------eCc--HHhcCHHHHHHHHHHHHHcCC------------------CcEE-EE
Confidence 00000111100 011 135677778888888877652 1255 45
Q ss_pred cEEEEEeeeCCeEE-EEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258 195 HECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGS 237 (572)
Q Consensus 195 ~~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~vVgADG~~S 237 (572)
.+++++..+++.+. |.+. +|. .+.|+.||.|+|..+
T Consensus 121 ~~V~~Li~e~grV~GV~t~---dG~----~I~Ak~VIlATGTFL 157 (618)
T PRK05192 121 GEVEDLIVENGRVVGVVTQ---DGL----EFRAKAVVLTTGTFL 157 (618)
T ss_pred eEEEEEEecCCEEEEEEEC---CCC----EEECCEEEEeeCcch
Confidence 67888776666654 3332 453 699999999999765
No 80
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.04 E-value=2.1e-09 Score=111.57 Aligned_cols=68 Identities=24% Similarity=0.336 Sum_probs=52.0
Q ss_pred ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEE-EEEEeccCCceeeEEEEecEE
Q 008258 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNIL 229 (572)
Q Consensus 151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~v 229 (572)
.++-..+.+.|.+.+.+.|+ +++.+++|++++.++++++ |.+. +| +++||.|
T Consensus 143 ~i~~~~l~~~l~~~~~~~Gv-------------------~i~~~~~V~~i~~~~~~v~gv~~~---~g-----~i~ad~v 195 (358)
T PF01266_consen 143 VIDPRRLIQALAAEAQRAGV-------------------EIRTGTEVTSIDVDGGRVTGVRTS---DG-----EIRADRV 195 (358)
T ss_dssp EEEHHHHHHHHHHHHHHTT--------------------EEEESEEEEEEEEETTEEEEEEET---TE-----EEEECEE
T ss_pred cccccchhhhhHHHHHHhhh-------------------hccccccccchhhccccccccccc---cc-----cccccee
Confidence 34557888889999999887 9999999999999999987 6654 44 5899999
Q ss_pred EeecCCChhh-hhhcCC
Q 008258 230 IGTDGAGSTV-RKLVGI 245 (572)
Q Consensus 230 VgADG~~S~V-R~~lg~ 245 (572)
|.|.|.+|.- .+.++.
T Consensus 196 V~a~G~~s~~l~~~~~~ 212 (358)
T PF01266_consen 196 VLAAGAWSPQLLPLLGL 212 (358)
T ss_dssp EE--GGGHHHHHHTTTT
T ss_pred Eecccccceeeeecccc
Confidence 9999998864 444554
No 81
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.02 E-value=3.4e-09 Score=110.47 Aligned_cols=181 Identities=15% Similarity=0.232 Sum_probs=100.0
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCCCCCC---------eeeeChhHHH--HHHhhc-chHHHHHh
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFSTHPQ---------AHFINNRYAL--VFRKLD-GLAEEIER 107 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~G--i~v~viEr~~~~~~~~~---------a~~l~~rt~e--~l~~l~-Gl~~~l~~ 107 (572)
..+||+|||||+.|+++|..|++++ ++|.|+||...+..... +....+..+. +-..-. -..+-.++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999998 99999999987643211 1112222111 111000 01111122
Q ss_pred cCCCcccccceeeeeCCC---------------CCe-eeeecCCCccccccc---------cCCccccccChhhHHHHHH
Q 008258 108 SQPPVDLWRKFIYCTSVT---------------GPI-LGSVDHMQPQDFEKV---------VSPVSVAHFSQYKLNKLLL 162 (572)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~---------------G~~-~~~~~~~~~~~~~~~---------~sp~~~~~l~q~~L~~~L~ 162 (572)
...|...-..+...++.. |-. +...+.......+.. ..|. ...++-..+...|.
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~-~giV~~~~~t~~l~ 160 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPS-GGIVDPGELTRALA 160 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCC-CceEcHHHHHHHHH
Confidence 222211111111111100 100 000000000001110 1111 23344566777888
Q ss_pred HHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh-hhh
Q 008258 163 KQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST-VRK 241 (572)
Q Consensus 163 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~-VR~ 241 (572)
+.+...|+ +++++++|+.++..++++++... .+|+ +. ++|++||.|-|..|. +.+
T Consensus 161 e~a~~~g~-------------------~i~ln~eV~~i~~~~dg~~~~~~--~~g~--~~-~~ak~Vin~AGl~Ad~la~ 216 (429)
T COG0579 161 EEAQANGV-------------------ELRLNTEVTGIEKQSDGVFVLNT--SNGE--ET-LEAKFVINAAGLYADPLAQ 216 (429)
T ss_pred HHHHHcCC-------------------EEEecCeeeEEEEeCCceEEEEe--cCCc--EE-EEeeEEEECCchhHHHHHH
Confidence 88888887 99999999999999986444333 2442 22 999999999999886 566
Q ss_pred hcCCcc
Q 008258 242 LVGIDL 247 (572)
Q Consensus 242 ~lg~~~ 247 (572)
..|++.
T Consensus 217 ~~g~~~ 222 (429)
T COG0579 217 MAGIPE 222 (429)
T ss_pred HhCCCc
Confidence 667654
No 82
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.02 E-value=1.4e-09 Score=103.83 Aligned_cols=135 Identities=24% Similarity=0.301 Sum_probs=75.9
Q ss_pred EEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcC---CCcccccceeeee
Q 008258 47 LIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQ---PPVDLWRKFIYCT 122 (572)
Q Consensus 47 lIVGaGpaGL~~A~~La~~Gi~-v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~---~~~~~~~~~~~~~ 122 (572)
+||||||+||++|..|.+.|++ ++||||.+.+. |.+....... .|. ....
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~G--------------------g~w~~~~~~~~~~~~~-~~~~----- 54 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPG--------------------GVWRRYYSYTRLHSPS-FFSS----- 54 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSST--------------------THHHCH-TTTT-BSSS-CCTG-----
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCC--------------------CeeEEeCCCCccccCc-cccc-----
Confidence 6999999999999999999999 99999987752 2222111000 000 0000
Q ss_pred CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (572)
Q Consensus 123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~ 202 (572)
..+ +............. .+......++..+.+.|.+.+++.+. +++++++|++++.
T Consensus 55 -~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~yl~~~~~~~~l-------------------~i~~~~~V~~v~~ 110 (203)
T PF13738_consen 55 -DFG--LPDFESFSFDDSPE--WRWPHDFPSGEEVLDYLQEYAERFGL-------------------EIRFNTRVESVRR 110 (203)
T ss_dssp -GSS----CCCHSCHHHHHH--HHHSBSSEBHHHHHHHHHHHHHHTTG-------------------GEETS--EEEEEE
T ss_pred -ccc--CCcccccccccCCC--CCCCcccCCHHHHHHHHHHHHhhcCc-------------------ccccCCEEEEEEE
Confidence 000 00000000000000 00011224567778888888888876 6899999999999
Q ss_pred eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (572)
Q Consensus 203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~ 238 (572)
+++++++++. ++ ++++||.||.|.|..|.
T Consensus 111 ~~~~w~v~~~---~~----~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 111 DGDGWTVTTR---DG----RTIRADRVVLATGHYSH 139 (203)
T ss_dssp ETTTEEEEET---TS-----EEEEEEEEE---SSCS
T ss_pred eccEEEEEEE---ec----ceeeeeeEEEeeeccCC
Confidence 9999888875 44 36889999999998664
No 83
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.99 E-value=3.8e-10 Score=120.50 Aligned_cols=154 Identities=23% Similarity=0.309 Sum_probs=37.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC----CeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP----QAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~----~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (572)
|||||||||+|+++|+.+++.|.+|+||||.+.+-... ..........+ ...+|+.+++.........
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~--~~~~gi~~e~~~~~~~~~~------ 72 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDED--QVIGGIFREFLNRLRARGG------ 72 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHH--HHHHHHHHHHHHST-----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhh--ccCCCHHHHHHHHHhhhcc------
Confidence 89999999999999999999999999999998763211 11111112222 1113666666553221100
Q ss_pred eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (572)
Q Consensus 121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v 200 (572)
.... . . ........+....+..+|.+.+.+.|+ ++++++.++++
T Consensus 73 ------~~~~--~-----~----~~~~~~~~~~~~~~~~~l~~~l~e~gv-------------------~v~~~t~v~~v 116 (428)
T PF12831_consen 73 ------YPQE--D-----R----YGWVSNVPFDPEVFKAVLDEMLAEAGV-------------------EVLLGTRVVDV 116 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------cccc--c-----c----ccccccccccccccccccccccccccc-------------------ccccccccccc
Confidence 0000 0 0 000001234445566667777767676 89999999999
Q ss_pred eeeCCeEE-EEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCcc
Q 008258 201 SATDQCIN-VIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGIDL 247 (572)
Q Consensus 201 ~~~~~~v~-v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~~ 247 (572)
..+++.++ |++... +| ..+++|+++|+|+|- ..+-...|.++
T Consensus 117 ~~~~~~i~~V~~~~~-~g---~~~i~A~~~IDaTG~-g~l~~~aG~~~ 159 (428)
T PF12831_consen 117 IRDGGRITGVIVETK-SG---RKEIRAKVFIDATGD-GDLAALAGAPY 159 (428)
T ss_dssp ------------------------------------------------
T ss_pred ccccccccccccccc-cc---ccccccccccccccc-ccccccccccc
Confidence 88765543 333311 22 458999999999995 55666667654
No 84
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.98 E-value=1.3e-08 Score=110.05 Aligned_cols=75 Identities=25% Similarity=0.403 Sum_probs=53.2
Q ss_pred ccChhhHHHHHHHHHHhcC-ceeeccCCcccccccccccceEEeccEEEEEeeeCCe-EEEEEEeccCCceeeEEEEecE
Q 008258 151 HFSQYKLNKLLLKQLEKLN-FKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNI 228 (572)
Q Consensus 151 ~l~q~~L~~~L~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~-v~v~~~~~~~g~~~~~~i~ad~ 228 (572)
.++...+.+.|.+.+.+.| + +++++++|++++.++++ +++++...++| ...+++|++
T Consensus 179 ~Vd~~~l~~aL~~~a~~~Ggv-------------------~i~~~teV~~I~~~~dg~~~v~~~~~~~G--~~~~i~A~~ 237 (494)
T PRK05257 179 DVNFGALTRQLVGYLQKQGNF-------------------ELQLGHEVRDIKRNDDGSWTVTVKDLKTG--EKRTVRAKF 237 (494)
T ss_pred EECHHHHHHHHHHHHHhCCCe-------------------EEEeCCEEEEEEECCCCCEEEEEEEcCCC--ceEEEEcCE
Confidence 4556678888888888775 5 89999999999986664 66665422233 223689999
Q ss_pred EEeecCCCh-hhhhhcCCc
Q 008258 229 LIGTDGAGS-TVRKLVGID 246 (572)
Q Consensus 229 vVgADG~~S-~VR~~lg~~ 246 (572)
||.|.|++| .+++.+|++
T Consensus 238 VVvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 238 VFIGAGGGALPLLQKSGIP 256 (494)
T ss_pred EEECCCcchHHHHHHcCCC
Confidence 876666665 477777765
No 85
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.98 E-value=7.1e-08 Score=102.86 Aligned_cols=33 Identities=21% Similarity=0.552 Sum_probs=31.4
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
||+|||||++||++|+.|+++|.+|+|+||...
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 799999999999999999999999999999754
No 86
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.93 E-value=1.4e-08 Score=109.39 Aligned_cols=70 Identities=14% Similarity=0.220 Sum_probs=51.1
Q ss_pred ccChhhHHHHHHHHHHh----cCceeeccCCcccccccccccceEEeccEEEEEeee-CCeEEEEEEeccCCceeeEEEE
Q 008258 151 HFSQYKLNKLLLKQLEK----LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT-DQCINVIASFLKEGKCTERNIQ 225 (572)
Q Consensus 151 ~l~q~~L~~~L~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~-~~~v~v~~~~~~~g~~~~~~i~ 225 (572)
.++-..|.+.|.+.+.+ .|. +++++++++|++++.+ ++.+.|+.. +| +++
T Consensus 207 ~Vd~~~L~~al~~~a~~~~~~~G~-----------------~v~i~~~t~V~~I~~~~~~~~~V~T~---~G-----~i~ 261 (497)
T PTZ00383 207 TVDYQKLSESFVKHARRDALVPGK-----------------KISINLNTEVLNIERSNDSLYKIHTN---RG-----EIR 261 (497)
T ss_pred EECHHHHHHHHHHHHHhhhhhcCC-----------------CEEEEeCCEEEEEEecCCCeEEEEEC---CC-----EEE
Confidence 45556777788888877 663 1378999999999987 444555432 44 589
Q ss_pred ecEEEeecCCChh-hhhhcCC
Q 008258 226 CNILIGTDGAGST-VRKLVGI 245 (572)
Q Consensus 226 ad~vVgADG~~S~-VR~~lg~ 245 (572)
||+||-|-|++|. +.+.+|+
T Consensus 262 A~~VVvaAG~~S~~La~~~Gi 282 (497)
T PTZ00383 262 ARFVVVSACGYSLLFAQKMGY 282 (497)
T ss_pred eCEEEECcChhHHHHHHHhCC
Confidence 9999999999985 5666664
No 87
>PRK07233 hypothetical protein; Provisional
Probab=98.91 E-value=6.5e-07 Score=95.91 Aligned_cols=59 Identities=25% Similarity=0.409 Sum_probs=43.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCC------------Ceee---eChhHHHHHHhhcchHHH
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHP------------QAHF---INNRYALVFRKLDGLAEE 104 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~------------~a~~---l~~rt~e~l~~l~Gl~~~ 104 (572)
+|+|||||++||++|..|+++|++|+|+|+++.+.-.- .++. -.+...++++++ |+.+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~l-g~~~~ 74 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDEL-GLEDK 74 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHc-CCCCc
Confidence 59999999999999999999999999999998652110 0111 135567777777 76543
No 88
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.90 E-value=5.4e-08 Score=107.09 Aligned_cols=74 Identities=12% Similarity=0.211 Sum_probs=52.9
Q ss_pred ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEE-EEEEeccCCceeeEEEEecEE
Q 008258 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNIL 229 (572)
Q Consensus 151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~v 229 (572)
.++-..|...+...+.+.|+ +++.+++|+++..++++++ |++.+..++ +..+++|+.|
T Consensus 145 ~vdp~rl~~al~~~A~~~Ga-------------------~i~~~t~V~~i~~~~~~v~gv~v~d~~~g--~~~~i~A~~V 203 (546)
T PRK11101 145 TVDPFRLTAANMLDAKEHGA-------------------QILTYHEVTGLIREGDTVCGVRVRDHLTG--ETQEIHAPVV 203 (546)
T ss_pred EECHHHHHHHHHHHHHhCCC-------------------EEEeccEEEEEEEcCCeEEEEEEEEcCCC--cEEEEECCEE
Confidence 45556677777788888887 8899999999988776654 455422223 2347999999
Q ss_pred EeecCCChh-hhhhcCC
Q 008258 230 IGTDGAGST-VRKLVGI 245 (572)
Q Consensus 230 VgADG~~S~-VR~~lg~ 245 (572)
|.|.|+.|. +.+..+.
T Consensus 204 VnAaG~wa~~l~~~~g~ 220 (546)
T PRK11101 204 VNAAGIWGQHIAEYADL 220 (546)
T ss_pred EECCChhHHHHHHhcCC
Confidence 999999885 5554553
No 89
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.89 E-value=7.1e-08 Score=103.75 Aligned_cols=76 Identities=22% Similarity=0.264 Sum_probs=54.0
Q ss_pred cccChhhHHHHHHHHHHhc-CceeeccCCcccccccccccceEEeccEEEEEeee-CCeEEEEEEeccCCceeeEEEEec
Q 008258 150 AHFSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT-DQCINVIASFLKEGKCTERNIQCN 227 (572)
Q Consensus 150 ~~l~q~~L~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~-~~~v~v~~~~~~~g~~~~~~i~ad 227 (572)
..++...|.+.|.+.+.+. |+ +++++++|++++.+ ++++++++...+++ +..+++||
T Consensus 179 ~~VD~~~L~~aL~~~l~~~~Gv-------------------~i~~~~~V~~I~~~~d~~w~v~v~~t~~g--~~~~i~Ad 237 (497)
T PRK13339 179 TDVNFGALTRKLAKHLESHPNA-------------------QVKYNHEVVDLERLSDGGWEVTVKDRNTG--EKREQVAD 237 (497)
T ss_pred eecCHHHHHHHHHHHHHhCCCc-------------------EEEeCCEEEEEEECCCCCEEEEEEecCCC--ceEEEEcC
Confidence 4567777888888887543 55 89999999999877 66777765422223 12258999
Q ss_pred EEEeecCCChh-hhhhcCCc
Q 008258 228 ILIGTDGAGST-VRKLVGID 246 (572)
Q Consensus 228 ~vVgADG~~S~-VR~~lg~~ 246 (572)
+||-|-|++|. +.+.+|+.
T Consensus 238 ~VV~AAGawS~~La~~~Gi~ 257 (497)
T PRK13339 238 YVFIGAGGGAIPLLQKSGIP 257 (497)
T ss_pred EEEECCCcchHHHHHHcCCC
Confidence 99877777774 67777765
No 90
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.89 E-value=1.3e-08 Score=114.72 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=33.2
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
..||+|||||++|+++|+.|+++|++|+|+||...+
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~ 295 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAP 295 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCc
Confidence 479999999999999999999999999999998543
No 91
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.88 E-value=6.5e-07 Score=95.55 Aligned_cols=183 Identities=15% Similarity=0.177 Sum_probs=105.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCCCeeeeChhHHHHHHhhc-c-hHHHH------HhcCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-THPQAHFINNRYALVFRKLD-G-LAEEI------ERSQPP 111 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~-~~~~a~~l~~rt~e~l~~l~-G-l~~~l------~~~~~~ 111 (572)
+..+||+|||||+.|+-+|+-++.+|++|+|+|++.--. ..++.+.+-+.+++.|.+.. . +.+.+ .+.++.
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH 89 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPH 89 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCcc
Confidence 467999999999999999999999999999999987542 33455555555666655431 1 11222 222222
Q ss_pred cccccceee--ee----------------CCCCC-e-eeeecCCCcc---ccccccC--------CccccccChhhHHHH
Q 008258 112 VDLWRKFIY--CT----------------SVTGP-I-LGSVDHMQPQ---DFEKVVS--------PVSVAHFSQYKLNKL 160 (572)
Q Consensus 112 ~~~~~~~~~--~~----------------~~~G~-~-~~~~~~~~~~---~~~~~~s--------p~~~~~l~q~~L~~~ 160 (572)
+..-..+.. .. ...|. . .......... ....... -+.-+.++-.+|.-.
T Consensus 90 ~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~ 169 (532)
T COG0578 90 LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAA 169 (532)
T ss_pred ccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHH
Confidence 211000110 00 01110 0 0000000000 0000000 011133444566666
Q ss_pred HHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh-h
Q 008258 161 LLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST-V 239 (572)
Q Consensus 161 L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~-V 239 (572)
+...+.+.|. +++..++|+++..+++-+-|.+.+..+| ++++++|+.||.|.|+.+- +
T Consensus 170 ~a~~A~~~Ga-------------------~il~~~~v~~~~re~~v~gV~~~D~~tg--~~~~ira~~VVNAaGpW~d~i 228 (532)
T COG0578 170 NARDAAEHGA-------------------EILTYTRVESLRREGGVWGVEVEDRETG--ETYEIRARAVVNAAGPWVDEI 228 (532)
T ss_pred HHHHHHhccc-------------------chhhcceeeeeeecCCEEEEEEEecCCC--cEEEEEcCEEEECCCccHHHH
Confidence 6677777776 7888889999988877445666644444 6789999999999999886 4
Q ss_pred hhhcC
Q 008258 240 RKLVG 244 (572)
Q Consensus 240 R~~lg 244 (572)
++..+
T Consensus 229 ~~~~~ 233 (532)
T COG0578 229 LEMAG 233 (532)
T ss_pred HHhhc
Confidence 66554
No 92
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.87 E-value=3.5e-09 Score=112.02 Aligned_cols=149 Identities=25% Similarity=0.312 Sum_probs=83.3
Q ss_pred EEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC------CCCeeeeChhHH-HHHHhhcc----hHHHHHhcCCCcccc
Q 008258 47 LIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------HPQAHFINNRYA-LVFRKLDG----LAEEIERSQPPVDLW 115 (572)
Q Consensus 47 lIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~------~~~a~~l~~rt~-e~l~~l~G----l~~~l~~~~~~~~~~ 115 (572)
+||||||+||++|+.|++.|.+|+|+||.+.+.. .++....+.... +.++..+. +...+.... +.+..
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~-~~d~~ 79 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFS-NKDLI 79 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCC-HHHHH
Confidence 6999999999999999999999999999876522 112222222211 11122211 111111110 00000
Q ss_pred cceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEecc
Q 008258 116 RKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGH 195 (572)
Q Consensus 116 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~ 195 (572)
..+ . ..|-.+...+. . . .-| ..-....+.+.|.+.+++.|+ ++++++
T Consensus 80 ~~~---~-~~Gv~~~~~~~-g--~----~~p---~~~~a~~v~~~L~~~l~~~gv-------------------~i~~~~ 126 (400)
T TIGR00275 80 DFF---E-SLGLELKVEED-G--R----VFP---CSDSAADVLDALLNELKELGV-------------------EILTNS 126 (400)
T ss_pred HHH---H-HcCCeeEEecC-C--E----eEC---CCCCHHHHHHHHHHHHHHCCC-------------------EEEeCC
Confidence 000 0 01111110000 0 0 001 011235677788888888776 899999
Q ss_pred EEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258 196 ECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (572)
Q Consensus 196 ~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S 237 (572)
++++++++++.+.++. ++. ++.+|.||.|+|..|
T Consensus 127 ~V~~i~~~~~~~~v~~----~~~----~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 127 KVKSIKKDDNGFGVET----SGG----EYEADKVILATGGLS 160 (400)
T ss_pred EEEEEEecCCeEEEEE----CCc----EEEcCEEEECCCCcc
Confidence 9999988776655543 222 588999999999988
No 93
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.86 E-value=1.5e-07 Score=104.93 Aligned_cols=73 Identities=19% Similarity=0.179 Sum_probs=52.7
Q ss_pred ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeC--CeEE-EEEEeccCCceeeEEEEec
Q 008258 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD--QCIN-VIASFLKEGKCTERNIQCN 227 (572)
Q Consensus 151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~--~~v~-v~~~~~~~g~~~~~~i~ad 227 (572)
.++-..|...|.+.+.+.|+ +++.+++|+++..++ +.++ |++.+..++ .++++++|
T Consensus 228 ~vdp~rl~~al~~~A~~~Ga-------------------~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg--~~~~i~a~ 286 (627)
T PLN02464 228 QMNDSRLNVALACTAALAGA-------------------AVLNYAEVVSLIKDESTGRIVGARVRDNLTG--KEFDVYAK 286 (627)
T ss_pred EEcHHHHHHHHHHHHHhCCc-------------------EEEeccEEEEEEEecCCCcEEEEEEEECCCC--cEEEEEeC
Confidence 34556788888888888887 888999999988763 4443 444422233 34578999
Q ss_pred EEEeecCCChh-hhhhcC
Q 008258 228 ILIGTDGAGST-VRKLVG 244 (572)
Q Consensus 228 ~vVgADG~~S~-VR~~lg 244 (572)
.||.|.|+.|. +++.++
T Consensus 287 ~VVnAaGaws~~l~~~~g 304 (627)
T PLN02464 287 VVVNAAGPFCDEVRKMAD 304 (627)
T ss_pred EEEECCCHhHHHHHHhcc
Confidence 99999999986 666664
No 94
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.83 E-value=3.1e-08 Score=100.45 Aligned_cols=112 Identities=25% Similarity=0.361 Sum_probs=75.2
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
+||+||||||+|+++|..|++.|++|+|||+.+ + + +..... . .. ..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~---g-g~~~~~----------~----------~~---~~------ 46 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-P---G-GQLTTT----------T----------EV---EN------ 46 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-C---C-cceeec----------c----------cc---cc------
Confidence 589999999999999999999999999999875 2 1 100000 0 00 00
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
. |.....++...+...+.+.+.+.|+ ++++ .++++++.+
T Consensus 47 ~---------------------~~~~~~~~~~~~~~~l~~~~~~~gv-------------------~~~~-~~v~~v~~~ 85 (300)
T TIGR01292 47 Y---------------------PGFPEGISGPELMEKMKEQAVKFGA-------------------EIIY-EEVIKVDLS 85 (300)
T ss_pred c---------------------CCCCCCCChHHHHHHHHHHHHHcCC-------------------eEEE-EEEEEEEec
Confidence 0 0000012223455566777777776 7777 789999887
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (572)
Q Consensus 204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S 237 (572)
++.++++.. ++. ++++|+||.|.|...
T Consensus 86 ~~~~~v~~~---~~~----~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 86 DRPFKVKTG---DGK----EYTAKAVIIATGASA 112 (300)
T ss_pred CCeeEEEeC---CCC----EEEeCEEEECCCCCc
Confidence 777766654 342 689999999999854
No 95
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.82 E-value=2.8e-08 Score=107.68 Aligned_cols=37 Identities=24% Similarity=0.432 Sum_probs=34.2
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
..++||||||||++||++|+.+++.|.+|+||||.+.
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3468999999999999999999999999999999864
No 96
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.80 E-value=1.4e-07 Score=102.88 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=35.0
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
..++||||||||++|+++|+.+++.|.+|+||||.+..
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~ 96 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVA 96 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 34789999999999999999999999999999998764
No 97
>PLN02661 Putative thiazole synthesis
Probab=98.79 E-value=1.1e-07 Score=96.82 Aligned_cols=38 Identities=34% Similarity=0.453 Sum_probs=34.1
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~-Gi~v~viEr~~~~ 78 (572)
..++||+|||||++|+++|+.|++. |.+|+||||...+
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~ 128 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP 128 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 3468999999999999999999986 8999999997665
No 98
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.79 E-value=2.2e-07 Score=102.11 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=34.8
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
..++||||||+|+|||++|+.+++.|.+|+|+||.+..
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~ 51 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD 51 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence 45689999999999999999999999999999998754
No 99
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.78 E-value=5.4e-08 Score=104.04 Aligned_cols=40 Identities=28% Similarity=0.440 Sum_probs=36.6
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCCC
Q 008258 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKAF 78 (572)
Q Consensus 39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~~~ 78 (572)
+.+..+||+|||||++|+++|..|.+.|++ ++|+||+..+
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~ 44 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV 44 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCc
Confidence 345678999999999999999999999999 9999999876
No 100
>PRK07121 hypothetical protein; Validated
Probab=98.77 E-value=7.8e-08 Score=104.80 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=35.1
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
..++||||||||.+||++|+.+++.|.+|+||||.+..
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~ 55 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGA 55 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 45789999999999999999999999999999998764
No 101
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.77 E-value=1.5e-07 Score=102.28 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHh-cCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEE-EEEEeccCCceeeEEEEecEEEee
Q 008258 155 YKLNKLLLKQLEK-LNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNILIGT 232 (572)
Q Consensus 155 ~~L~~~L~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~vVgA 232 (572)
..+.+.|.+.+.+ .++ +++++++++++..+++.+. +.+.. .+ ....++++.||.|
T Consensus 128 ~~l~~~L~~~~~~~~gi-------------------~i~~~~~v~~l~~~~g~v~Gv~~~~--~~--~~~~i~A~~VVlA 184 (488)
T TIGR00551 128 REVITTLVKKALNHPNI-------------------RIIEGENALDLLIETGRVVGVWVWN--RE--TVETCHADAVVLA 184 (488)
T ss_pred HHHHHHHHHHHHhcCCc-------------------EEEECeEeeeeeccCCEEEEEEEEE--CC--cEEEEEcCEEEEC
Confidence 4677788888876 455 8999999999987666554 33431 22 2347899999999
Q ss_pred cCCChhhhh
Q 008258 233 DGAGSTVRK 241 (572)
Q Consensus 233 DG~~S~VR~ 241 (572)
+|..|.+..
T Consensus 185 tGG~~~~~~ 193 (488)
T TIGR00551 185 TGGAGKLYQ 193 (488)
T ss_pred CCcccCCCC
Confidence 999997644
No 102
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.77 E-value=5.7e-08 Score=106.43 Aligned_cols=114 Identities=19% Similarity=0.352 Sum_probs=79.1
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (572)
...+||+||||||+|+++|..|++.|++|+|+|+... +... +.. ++. .
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~G------G~~~--------~~~-~~~--------------~--- 256 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFG------GQVL--------DTM-GIE--------------N--- 256 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC------Ceee--------ccC-ccc--------------c---
Confidence 4468999999999999999999999999999975311 1000 000 000 0
Q ss_pred eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (572)
Q Consensus 121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v 200 (572)
..+ + + ...-..+...|.+.+.+.|+ +++++++++++
T Consensus 257 ---~~~-------------~-----~----~~~~~~l~~~l~~~~~~~gv-------------------~i~~~~~V~~I 292 (517)
T PRK15317 257 ---FIS-------------V-----P----ETEGPKLAAALEEHVKEYDV-------------------DIMNLQRASKL 292 (517)
T ss_pred ---cCC-------------C-----C----CCCHHHHHHHHHHHHHHCCC-------------------EEEcCCEEEEE
Confidence 000 0 0 11234566777888888776 88889999999
Q ss_pred eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (572)
Q Consensus 201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S 237 (572)
+..++.+++++. +|. ++++|.||.|+|+++
T Consensus 293 ~~~~~~~~V~~~---~g~----~i~a~~vViAtG~~~ 322 (517)
T PRK15317 293 EPAAGLIEVELA---NGA----VLKAKTVILATGARW 322 (517)
T ss_pred EecCCeEEEEEC---CCC----EEEcCEEEECCCCCc
Confidence 887777777654 443 588999999999975
No 103
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.76 E-value=1.1e-06 Score=95.22 Aligned_cols=60 Identities=28% Similarity=0.457 Sum_probs=44.5
Q ss_pred CEEEECCCHHHHHHHHHHHhC------CCCEEEEcCCCCCCCC------------CCeeee---ChhHHHHHHhhcchHH
Q 008258 45 PVLIVGAGPVGLVLSILLTKL------GIKCSVLEKNKAFSTH------------PQAHFI---NNRYALVFRKLDGLAE 103 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~------Gi~v~viEr~~~~~~~------------~~a~~l---~~rt~e~l~~l~Gl~~ 103 (572)
+|+|||||++||++|..|++. |.+|+|+|+++.+--+ -.++.+ .+..+++++++ |+.+
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~l-gl~~ 81 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDL-NLEE 81 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHc-CCcc
Confidence 699999999999999999986 4899999998765211 011112 35677888888 8765
Q ss_pred HH
Q 008258 104 EI 105 (572)
Q Consensus 104 ~l 105 (572)
.+
T Consensus 82 ~~ 83 (463)
T PRK12416 82 EM 83 (463)
T ss_pred ce
Confidence 54
No 104
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.75 E-value=3.8e-06 Score=90.55 Aligned_cols=59 Identities=25% Similarity=0.369 Sum_probs=44.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCCCC------------CCeee---eChhHHHHHHhhcchHHH
Q 008258 45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFSTH------------PQAHF---INNRYALVFRKLDGLAEE 104 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~G--i~v~viEr~~~~~~~------------~~a~~---l~~rt~e~l~~l~Gl~~~ 104 (572)
+|+|||||++||++|..|++.| ++|+|+|+++.+.-+ -.++. -.+..+++++++ |+.+.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~l-gl~~~ 77 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKEL-GLEDE 77 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHc-CCccc
Confidence 6999999999999999999988 899999998764210 01111 134567888888 77654
No 105
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.75 E-value=3.1e-07 Score=102.12 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=35.1
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
+...++||||||||+|||++|+.+++.|.+|+|+||...
T Consensus 8 ~~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~ 46 (598)
T PRK09078 8 IIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFP 46 (598)
T ss_pred ccccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 344678999999999999999999999999999999764
No 106
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.74 E-value=1.5e-07 Score=97.26 Aligned_cols=144 Identities=17% Similarity=0.286 Sum_probs=82.8
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEE-cCCCCCCCCCCeeeeChh----HHHHHHhhcchHHHHH-hcCCCcccccce
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVL-EKNKAFSTHPQAHFINNR----YALVFRKLDGLAEEIE-RSQPPVDLWRKF 118 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~vi-Er~~~~~~~~~a~~l~~r----t~e~l~~l~Gl~~~l~-~~~~~~~~~~~~ 118 (572)
||+|||||.||+.||++++|.|.+|+|+ ++.......++...+... ..+.++.++|+.-.+. ..+. .+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i------~~ 74 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGI------HF 74 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEE------EE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhh------hh
Confidence 7999999999999999999999999999 444445444444333211 1233444433222211 1111 01
Q ss_pred eeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEE
Q 008258 119 IYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECV 198 (572)
Q Consensus 119 ~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~ 198 (572)
...+...|... -.....++|..+.+.+.+.+++.+ +.++. ..+|+
T Consensus 75 ~~lN~skGpav----------------~a~r~qvDr~~y~~~~~~~l~~~~------------------nl~i~-~~~V~ 119 (392)
T PF01134_consen 75 RMLNRSKGPAV----------------HALRAQVDRDKYSRAMREKLESHP------------------NLTII-QGEVT 119 (392)
T ss_dssp EEESTTS-GGC----------------TEEEEEE-HHHHHHHHHHHHHTST------------------TEEEE-ES-EE
T ss_pred hcccccCCCCc----------------cchHhhccHHHHHHHHHHHHhcCC------------------CeEEE-Ecccc
Confidence 11111111110 111246789999999999887753 34664 57899
Q ss_pred EEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCC
Q 008258 199 SVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA 235 (572)
Q Consensus 199 ~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~ 235 (572)
++..+++.|.-... .+|. .+.+|.||.|+|.
T Consensus 120 ~l~~e~~~v~GV~~--~~g~----~~~a~~vVlaTGt 150 (392)
T PF01134_consen 120 DLIVENGKVKGVVT--KDGE----EIEADAVVLATGT 150 (392)
T ss_dssp EEEECTTEEEEEEE--TTSE----EEEECEEEE-TTT
T ss_pred eEEecCCeEEEEEe--CCCC----EEecCEEEEeccc
Confidence 99887777665443 2453 7899999999998
No 107
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.74 E-value=5.3e-06 Score=89.79 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=46.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCCC-------CC-----Ceeee---ChhHHHHHHhhcchHHH
Q 008258 44 VPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFST-------HP-----QAHFI---NNRYALVFRKLDGLAEE 104 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~----Gi~v~viEr~~~~~~-------~~-----~a~~l---~~rt~e~l~~l~Gl~~~ 104 (572)
.||+|||||++||++|..|+++ |++|+|+|+++.+.- .+ .++.+ .++.+++++++ |+.+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~l-gl~~~ 81 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDL-GLEHV 81 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHc-CCCcc
Confidence 5899999999999999999999 999999999876421 01 12222 24578888888 87654
Q ss_pred H
Q 008258 105 I 105 (572)
Q Consensus 105 l 105 (572)
+
T Consensus 82 ~ 82 (462)
T TIGR00562 82 L 82 (462)
T ss_pred c
Confidence 4
No 108
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.74 E-value=5.8e-08 Score=102.60 Aligned_cols=147 Identities=18% Similarity=0.211 Sum_probs=89.5
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeee
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYC 121 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~ 121 (572)
...+|+|||||||||++|..|.+.|++++++||...+. .-....+..-+... -+.+.++..- |.+.+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iG---GlW~y~~~~~~~~s---s~Y~~l~tn~-pKe~~------ 71 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIG---GLWKYTENVEVVHS---SVYKSLRTNL-PKEMM------ 71 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCcc---ceEeecCccccccc---chhhhhhccC-Chhhh------
Confidence 34699999999999999999999999999999998762 11111110000000 0111111111 10000
Q ss_pred eCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEe
Q 008258 122 TSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVS 201 (572)
Q Consensus 122 ~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~ 201 (572)
.-.+...+.+ .+...-+...+.+.|...+++.+. ...|+|+++++.++
T Consensus 72 --------~~~dfpf~~~-------~~~~~p~~~e~~~YL~~yA~~F~l-----------------~~~i~f~~~v~~v~ 119 (448)
T KOG1399|consen 72 --------GYSDFPFPER-------DPRYFPSHREVLEYLRDYAKHFDL-----------------LKMINFNTEVVRVD 119 (448)
T ss_pred --------cCCCCCCccc-------CcccCCCHHHHHHHHHHHHHhcCh-----------------hhheEecccEEEEe
Confidence 0000000000 011122344788899999988875 23799999999999
Q ss_pred eeC-CeEEEEEEeccCCceeeEEEEecEEEeecCCC
Q 008258 202 ATD-QCINVIASFLKEGKCTERNIQCNILIGTDGAG 236 (572)
Q Consensus 202 ~~~-~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~ 236 (572)
..+ +.+.|+... +++ .....-+|.||.|.|-+
T Consensus 120 ~~~~gkW~V~~~~--~~~-~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 120 SIDKGKWRVTTKD--NGT-QIEEEIFDAVVVCTGHY 152 (448)
T ss_pred eccCCceeEEEec--CCc-ceeEEEeeEEEEcccCc
Confidence 988 688888872 222 23456799999999988
No 109
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.74 E-value=1.4e-07 Score=101.86 Aligned_cols=37 Identities=30% Similarity=0.458 Sum_probs=33.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKA 77 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~ 77 (572)
..++||+|||||++|+++|+.|++. |.+|+|+|+...
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 4458999999999999999999998 999999999753
No 110
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.74 E-value=2.6e-07 Score=102.35 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=33.5
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~ 78 (572)
+.++||||||||.|||++|+.+++. |.+|+|+||....
T Consensus 2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~ 41 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM 41 (582)
T ss_pred ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence 4568999999999999999999987 5899999998643
No 111
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.73 E-value=3.6e-07 Score=101.74 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=34.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~ 78 (572)
+.++||||||||+|||++|+.+++. |.+|+||||.+..
T Consensus 9 ~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 9 EVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred eeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 3468999999999999999999998 9999999998653
No 112
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.73 E-value=3.8e-07 Score=101.63 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=34.7
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
+.++||||||||.|||++|+.+++.|.+|+|+||.+..
T Consensus 27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~ 64 (617)
T PTZ00139 27 DHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPT 64 (617)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCC
Confidence 35689999999999999999999999999999998653
No 113
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.72 E-value=2.9e-06 Score=83.81 Aligned_cols=48 Identities=33% Similarity=0.316 Sum_probs=42.9
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFIN 88 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~ 88 (572)
....||+|||||+-||++|+.|+|+|.+++++|+.+-+...+.+|..|
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~s 52 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGIS 52 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcc
Confidence 456899999999999999999999999999999999887777777665
No 114
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.70 E-value=5.7e-07 Score=99.84 Aligned_cols=39 Identities=33% Similarity=0.445 Sum_probs=35.1
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
|.+.++||||||||+|||++|+.+++.|.+|+||||...
T Consensus 8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~ 46 (591)
T PRK07057 8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP 46 (591)
T ss_pred cccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 345678999999999999999999999999999999753
No 115
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.70 E-value=4.2e-07 Score=97.21 Aligned_cols=36 Identities=33% Similarity=0.404 Sum_probs=32.4
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.++||||||+|.|||++|+.++ .|.+|+||||.+..
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~ 38 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLN 38 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCC
Confidence 5689999999999999999985 69999999998754
No 116
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.70 E-value=1.3e-07 Score=103.00 Aligned_cols=143 Identities=21% Similarity=0.264 Sum_probs=84.6
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCC-cccccceeeeeC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPP-VDLWRKFIYCTS 123 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~-~~~~~~~~~~~~ 123 (572)
+|+||||||+||++|-.|.+.|++++++||.+.. +|+|..-...... ...+.....
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~i--------------------GG~W~~~~~~~~g~~~~y~sl~~--- 59 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDI--------------------GGLWRYTENPEDGRSSVYDSLHT--- 59 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSS--------------------SGGGCHSTTCCCSEGGGSTT-B----
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCC--------------------CccCeeCCcCCCCccccccceEE---
Confidence 6999999999999999999999999999999876 2554211000000 000110000
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
...+...... ++.. .+......++..+.+.|.+.++..+. ...|+|+++|++++..
T Consensus 60 n~sk~~~~fs-----dfp~--p~~~p~f~~~~~v~~Yl~~Ya~~f~L-----------------~~~I~fnt~V~~v~~~ 115 (531)
T PF00743_consen 60 NTSKEMMAFS-----DFPF--PEDYPDFPSHSEVLEYLESYAEHFGL-----------------RKHIRFNTEVVSVERD 115 (531)
T ss_dssp SS-GGGSCCT-----TS-H--CCCCSSSEBHHHHHHHHHHHHHHTTG-----------------GGGEETSEEEEEEEEE
T ss_pred eeCchHhcCC-----CcCC--CCCCCCCCCHHHHHHHHHHHHhhhCC-----------------cceEEEccEEeEeeec
Confidence 0011111111 1110 00011234677899999999998875 1379999999999876
Q ss_pred CC-----eEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258 204 DQ-----CINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (572)
Q Consensus 204 ~~-----~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~ 238 (572)
++ .++|+.. ++| .+++-.+|.||.|.|.++.
T Consensus 116 ~d~~~~~~W~V~~~--~~g--~~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 116 PDFSATGKWEVTTE--NDG--KEETEEFDAVVVATGHFSK 151 (531)
T ss_dssp TTTT-ETEEEEEET--TTT--EEEEEEECEEEEEE-SSSC
T ss_pred cccCCCceEEEEee--cCC--eEEEEEeCeEEEcCCCcCC
Confidence 53 5666653 344 3345678999999999874
No 117
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.69 E-value=4.2e-07 Score=100.85 Aligned_cols=34 Identities=35% Similarity=0.488 Sum_probs=31.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
||||||||+|||++|+.+++.|.+|+||||.+..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~ 34 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPT 34 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence 8999999999999999999999999999998643
No 118
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.69 E-value=1.3e-07 Score=103.58 Aligned_cols=114 Identities=18% Similarity=0.334 Sum_probs=77.7
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (572)
...+||+||||||+|+++|+.|++.|++|+|||.... +... ... ++ ..+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~G------G~~~--------~~~-~~--------------~~~-- 258 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIG------GQVK--------DTV-GI--------------ENL-- 258 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC------Cccc--------cCc-Cc--------------ccc--
Confidence 4468999999999999999999999999999974311 1000 000 10 000
Q ss_pred eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (572)
Q Consensus 121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v 200 (572)
.+ .+ .....++.+.|.+.+.+.|+ +++.+++++++
T Consensus 259 ----~~------------------~~----~~~~~~l~~~l~~~l~~~gv-------------------~i~~~~~V~~I 293 (515)
T TIGR03140 259 ----IS------------------VP----YTTGSQLAANLEEHIKQYPI-------------------DLMENQRAKKI 293 (515)
T ss_pred ----cc------------------cC----CCCHHHHHHHHHHHHHHhCC-------------------eEEcCCEEEEE
Confidence 00 00 01234566677777777776 88889999999
Q ss_pred eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (572)
Q Consensus 201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S 237 (572)
+.+++.+.+++. +|. ++++|.||.|.|++.
T Consensus 294 ~~~~~~~~v~~~---~g~----~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 294 ETEDGLIVVTLE---SGE----VLKAKSVIVATGARW 323 (515)
T ss_pred EecCCeEEEEEC---CCC----EEEeCEEEECCCCCc
Confidence 877777766654 443 689999999999864
No 119
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.68 E-value=7.5e-07 Score=98.49 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=34.7
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
.+.++||||||+|.|||++|+.+++.|.+|+|+||.+.
T Consensus 2 ~~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~ 39 (566)
T PRK06452 2 EKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFP 39 (566)
T ss_pred CcccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 34678999999999999999999999999999999864
No 120
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.68 E-value=7.9e-07 Score=99.17 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=34.1
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.++||||||+|.|||++|+.+++.|.+|+|+||....
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~ 85 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT 85 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence 4689999999999999999999999999999998654
No 121
>PLN02612 phytoene desaturase
Probab=98.68 E-value=1.8e-05 Score=87.46 Aligned_cols=63 Identities=25% Similarity=0.388 Sum_probs=48.5
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC-------------CCeee---eChhHHHHHHhhcchHHHH
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-------------PQAHF---INNRYALVFRKLDGLAEEI 105 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~-------------~~a~~---l~~rt~e~l~~l~Gl~~~l 105 (572)
...+|+|||||++||++|..|+++|++|+|+|++..+.-. .+.+. ..++.+++|+++ |+.+.+
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~el-G~~~~~ 170 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGEL-GINDRL 170 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHh-CCcccc
Confidence 3578999999999999999999999999999998643211 01122 236788999999 886654
No 122
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.67 E-value=8.2e-07 Score=99.32 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=34.2
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
+.++||||||||.|||++|+.+++.|.+|+|+||...+
T Consensus 33 ~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 33 KRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 35689999999999999999999999999999986543
No 123
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.66 E-value=3.8e-07 Score=100.65 Aligned_cols=41 Identities=24% Similarity=0.450 Sum_probs=36.9
Q ss_pred CCCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 38 VSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 38 ~~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.|.+.++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus 2 ~~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~ 42 (557)
T PRK07843 2 AMTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY 42 (557)
T ss_pred CCCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 34566899999999999999999999999999999998754
No 124
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.66 E-value=6.4e-07 Score=99.09 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=33.1
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~ 78 (572)
.++||||||||+|||++|+.+++. |.+|+|+||....
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~ 40 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPM 40 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence 358999999999999999999987 6899999998654
No 125
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.66 E-value=1.5e-07 Score=101.09 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=32.2
Q ss_pred CEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF 78 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~~ 78 (572)
||||||||++|+++|+.++++| .+|+||||.+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~ 35 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI 35 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence 8999999999999999999999 999999998764
No 126
>PLN02268 probable polyamine oxidase
Probab=98.66 E-value=1.1e-05 Score=86.67 Aligned_cols=35 Identities=23% Similarity=0.456 Sum_probs=32.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.+|+|||||++||++|..|.+.|++|+|+|+++.+
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~ 35 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRI 35 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 37999999999999999999999999999998754
No 127
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.65 E-value=6.2e-07 Score=99.51 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=35.9
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCC---CCEEEEcCCCCC
Q 008258 39 SNEAVVPVLIVGAGPVGLVLSILLTKLG---IKCSVLEKNKAF 78 (572)
Q Consensus 39 ~~~~~~dVlIVGaGpaGL~~A~~La~~G---i~v~viEr~~~~ 78 (572)
|...++||||||||+|||++|+.+++.| .+|+|+||.+..
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~ 43 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPM 43 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCC
Confidence 4466789999999999999999999998 899999998754
No 128
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.6e-07 Score=93.36 Aligned_cols=34 Identities=35% Similarity=0.701 Sum_probs=30.2
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKN 75 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~ 75 (572)
..+||+|||||||||++|++++++|.+ ++|+|+.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~ 36 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG 36 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC
Confidence 458999999999999999999999999 6666664
No 129
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.62 E-value=2.9e-07 Score=96.37 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=32.0
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
+||+|||||++|+++|+.|++.|.+|+|+||...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999864
No 130
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.62 E-value=4.9e-07 Score=96.51 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEe-ccCCceeeEEEEecEEEee
Q 008258 154 QYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASF-LKEGKCTERNIQCNILIGT 232 (572)
Q Consensus 154 q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~-~~~g~~~~~~i~ad~vVgA 232 (572)
-..+...|.+.+++.|+ +|+++++++++..+++.|+-.... ..+| ..++++|+-||-|
T Consensus 140 g~~~~~~l~~~~~~~gv-------------------~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g--~~~~i~A~aVIlA 198 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGV-------------------DIRFNTRVTDLITEDGRVTGVVAENPADG--EFVRIKAKAVILA 198 (417)
T ss_dssp HHHHHHHHHHHHHHTTE-------------------EEEESEEEEEEEEETTEEEEEEEEETTTC--EEEEEEESEEEE-
T ss_pred HHHHHHHHHHHHhhcCe-------------------eeeccceeeeEEEeCCceeEEEEEECCCC--eEEEEeeeEEEec
Confidence 35677889999999887 999999999999887766544432 2334 5668999999999
Q ss_pred cCCChh
Q 008258 233 DGAGST 238 (572)
Q Consensus 233 DG~~S~ 238 (572)
.|..+.
T Consensus 199 tGG~~~ 204 (417)
T PF00890_consen 199 TGGFGG 204 (417)
T ss_dssp ---BGG
T ss_pred cCcccc
Confidence 999885
No 131
>PLN02676 polyamine oxidase
Probab=98.62 E-value=7.5e-06 Score=88.86 Aligned_cols=37 Identities=32% Similarity=0.485 Sum_probs=33.6
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF 78 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~~ 78 (572)
..+||+|||||++||++|..|++.|+ +|+|+|++..+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~ 62 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRI 62 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence 35799999999999999999999998 69999998754
No 132
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.61 E-value=1.8e-07 Score=89.49 Aligned_cols=53 Identities=30% Similarity=0.489 Sum_probs=41.1
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC------------CCCeeeeChhHHHHHHh
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST------------HPQAHFINNRYALVFRK 97 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~------------~~~a~~l~~rt~e~l~~ 97 (572)
+|+|||+||+||++|..|+..|++|+|+||.....- .-.+-++.++.-.+++.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~ 67 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRA 67 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHH
Confidence 699999999999999999999999999999876421 11345666666555443
No 133
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.61 E-value=8.6e-07 Score=98.29 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=32.5
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKA 77 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~ 77 (572)
.++||||||||+|||++|+.+++. |.+|+|+||.+.
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 458999999999999999999987 489999999864
No 134
>PRK08275 putative oxidoreductase; Provisional
Probab=98.61 E-value=1.1e-06 Score=97.22 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=34.0
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~ 78 (572)
..++||||||||+|||++|+.+++. |.+|+|+||.+..
T Consensus 7 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 7 EVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred eEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 3568999999999999999999987 7899999998753
No 135
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.61 E-value=1e-06 Score=98.39 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=35.2
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.+.++||||||||+|||++|+.+++.|.+|+||||.+..
T Consensus 5 ~~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~ 43 (626)
T PRK07803 5 ERHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG 43 (626)
T ss_pred cceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 345689999999999999999999999999999998643
No 136
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.60 E-value=1.5e-06 Score=96.52 Aligned_cols=37 Identities=30% Similarity=0.327 Sum_probs=33.0
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
+..++||||||||+|||++|+.+++. .+|+|+||.+.
T Consensus 2 ~~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~ 38 (583)
T PRK08205 2 QQHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYP 38 (583)
T ss_pred cceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCC
Confidence 34578999999999999999999986 99999999864
No 137
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.59 E-value=3e-07 Score=95.86 Aligned_cols=101 Identities=19% Similarity=0.188 Sum_probs=66.2
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--------CCeeeeChhHHHHHHhhcchHH-HHHhcCCCccc
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--------PQAHFINNRYALVFRKLDGLAE-EIERSQPPVDL 114 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~--------~~a~~l~~rt~e~l~~l~Gl~~-~l~~~~~~~~~ 114 (572)
.||+|||||++|+.+|+.|+++|++|+|+|+++..... .+....+.++..++... |+++ +++..+...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~-Gll~~em~~lgsl~-- 79 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAV-GLLKEEMRRLGSLI-- 79 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcC-CchHHHHHHhcchh--
Confidence 48999999999999999999999999999988765321 12334556666777777 7665 444332110
Q ss_pred ccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhc
Q 008258 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKL 168 (572)
Q Consensus 115 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~ 168 (572)
.. ..... . ..+.....++|..+.+.|.+.+++.
T Consensus 80 -----~~---aad~~---------~----vPA~gaLvvdR~~~~~~L~~~L~~~ 112 (436)
T PRK05335 80 -----ME---AADAH---------R----VPAGGALAVDREGFSEYVTEALENH 112 (436)
T ss_pred -----ee---ccccc---------C----CCCccceecCHHHHHHHHHHHHHcC
Confidence 00 00000 0 1122234678888999999998765
No 138
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.59 E-value=1.2e-06 Score=96.22 Aligned_cols=38 Identities=34% Similarity=0.493 Sum_probs=33.6
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
+..++||||||+|+|||++|+.+++. .+|+|+||.+..
T Consensus 5 ~~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~ 42 (536)
T PRK09077 5 PEHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLS 42 (536)
T ss_pred ccccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCC
Confidence 35568999999999999999999986 899999998653
No 139
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.58 E-value=4.3e-07 Score=100.29 Aligned_cols=34 Identities=26% Similarity=0.598 Sum_probs=32.0
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
..+||+|||||||||++|+.|+++|++|+|||+.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~ 36 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD 36 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Confidence 3489999999999999999999999999999985
No 140
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.58 E-value=6.2e-06 Score=86.92 Aligned_cols=38 Identities=34% Similarity=0.484 Sum_probs=34.7
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
+.++||+|||||++|+++|+.|++.|.+|+|+|+....
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence 34689999999999999999999999999999998754
No 141
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.57 E-value=2.1e-06 Score=95.30 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=34.5
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
..++||||||+|.|||++|+.+++.|.+|+|+||....
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~ 42 (588)
T PRK08958 5 VREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPT 42 (588)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 45689999999999999999999999999999998543
No 142
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.57 E-value=1.9e-06 Score=96.56 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=36.3
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
|.+.++||||||||.|||++|+.+++.|.+|+||||.+..
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~ 40 (657)
T PRK08626 1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAK 40 (657)
T ss_pred CCceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 4467899999999999999999999999999999998654
No 143
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.53 E-value=2.7e-06 Score=93.83 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=32.8
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
+.++||||||||.|||++|+.+ +.|.+|+|+||.+.
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 4568999999999999999999 89999999999753
No 144
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.53 E-value=1.6e-06 Score=94.23 Aligned_cols=146 Identities=18% Similarity=0.213 Sum_probs=82.1
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCCC---eeeeChh-HHHHHHhhcchHHHHHh-cCCCcccccc
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS-THPQ---AHFINNR-YALVFRKLDGLAEEIER-SQPPVDLWRK 117 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~-~~~~---a~~l~~r-t~e~l~~l~Gl~~~l~~-~~~~~~~~~~ 117 (572)
+||+|||||++|+.+|..+++.|.+|+|+|+..... ..++ -.++... -.+-++.++|+...+.. .... |+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~---~r- 76 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQ---FR- 76 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhcee---he-
Confidence 599999999999999999999999999999975321 1111 1111111 12333444333222211 1111 10
Q ss_pred eeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEE
Q 008258 118 FIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC 197 (572)
Q Consensus 118 ~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v 197 (572)
......|... ..+ ...+++..+...|.+.+++.+. +.++. .++
T Consensus 77 --~ln~skgpAV--------------~~~--RaQVDr~~y~~~L~e~Le~~pg------------------V~Ile-~~V 119 (617)
T TIGR00136 77 --VLNSSKGPAV--------------RAT--RAQIDKVLYRKAMRNALENQPN------------------LSLFQ-GEV 119 (617)
T ss_pred --ecccCCCCcc--------------ccc--HHhCCHHHHHHHHHHHHHcCCC------------------cEEEE-eEE
Confidence 0000001100 011 1467777888888888877632 25543 466
Q ss_pred EEEeee-CCeE-EEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258 198 VSVSAT-DQCI-NVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (572)
Q Consensus 198 ~~v~~~-~~~v-~v~~~~~~~g~~~~~~i~ad~vVgADG~~S 237 (572)
+++..+ ++.+ .|.+. +|. .++|+.||.|.|..+
T Consensus 120 v~li~e~~g~V~GV~t~---~G~----~I~Ad~VILATGtfL 154 (617)
T TIGR00136 120 EDLILEDNDEIKGVVTQ---DGL----KFRAKAVIITTGTFL 154 (617)
T ss_pred EEEEEecCCcEEEEEEC---CCC----EEECCEEEEccCccc
Confidence 776544 3333 23332 453 689999999999985
No 145
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.53 E-value=1.8e-06 Score=93.26 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=32.2
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
.||+|||||+|||++|+.+++.|.+|+|+||.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5999999999999999999999999999999854
No 146
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.51 E-value=2.2e-06 Score=93.65 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=32.2
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
++||||||+|.|||++|+.+++ |.+|+|+||.+..
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~ 37 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKR 37 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCC
Confidence 5799999999999999999987 9999999998754
No 147
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.51 E-value=3.8e-06 Score=93.29 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=33.3
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
++||||||+|+|||++|+.+++.|.+|+||||.+..
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~ 38 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK 38 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 469999999999999999999999999999998653
No 148
>PLN02815 L-aspartate oxidase
Probab=98.49 E-value=4.1e-06 Score=92.71 Aligned_cols=38 Identities=18% Similarity=0.479 Sum_probs=34.3
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.+.++||||||+|.|||++|+.+++.| +|+|+||.+..
T Consensus 26 ~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~ 63 (594)
T PLN02815 26 STKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPH 63 (594)
T ss_pred cccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCC
Confidence 356789999999999999999999999 99999998754
No 149
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.48 E-value=2e-06 Score=68.93 Aligned_cols=34 Identities=26% Similarity=0.617 Sum_probs=31.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
+|+|||||++|+-+|..|++.|.+|+|+++.+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 4899999999999999999999999999998775
No 150
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.48 E-value=5.6e-05 Score=85.43 Aligned_cols=38 Identities=37% Similarity=0.451 Sum_probs=34.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
....+|+|||||++||++|+.|++.|++|+|+|++..+
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~ 273 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP 273 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence 34578999999999999999999999999999998654
No 151
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.46 E-value=1.6e-06 Score=96.21 Aligned_cols=39 Identities=31% Similarity=0.540 Sum_probs=35.3
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.+.++||+|||+|++|+++|+.+++.|.+|+||||.+..
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 47 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF 47 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 455789999999999999999999999999999997643
No 152
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.43 E-value=1e-06 Score=96.47 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=33.3
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.++||||||+| +||++|+.+++.|.+|+||||.+..
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~ 41 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKF 41 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence 46899999999 9999999999999999999998753
No 153
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.41 E-value=3.7e-06 Score=91.91 Aligned_cols=38 Identities=24% Similarity=0.202 Sum_probs=33.5
Q ss_pred CCCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 38 VSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 38 ~~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
.|.+.++||||||+|.|||++|+.++ |.+|+|+||.+.
T Consensus 4 ~~~~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 4 DLRILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred cccCCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 35567899999999999999999997 569999999875
No 154
>PLN02568 polyamine oxidase
Probab=98.41 E-value=3.1e-06 Score=92.61 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=34.8
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCC-----CCEEEEcCCCCC
Q 008258 40 NEAVVPVLIVGAGPVGLVLSILLTKLG-----IKCSVLEKNKAF 78 (572)
Q Consensus 40 ~~~~~dVlIVGaGpaGL~~A~~La~~G-----i~v~viEr~~~~ 78 (572)
++...||+|||||++||++|..|++.| ++|+|+|++..+
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~ 45 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI 45 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence 445679999999999999999999887 899999998765
No 155
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.40 E-value=6.7e-05 Score=74.23 Aligned_cols=38 Identities=24% Similarity=0.490 Sum_probs=33.9
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFS 79 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~----Gi~v~viEr~~~~~ 79 (572)
.++||+|||||..|++.|.+|+++ |++|+|+||+...+
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt 126 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT 126 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence 468999999999999999999865 79999999998764
No 156
>PRK10262 thioredoxin reductase; Provisional
Probab=98.39 E-value=5e-06 Score=85.46 Aligned_cols=35 Identities=17% Similarity=0.399 Sum_probs=32.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
+...||+||||||+||++|..|+++|.++++||+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 55689999999999999999999999999999954
No 157
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.38 E-value=2.4e-06 Score=94.81 Aligned_cols=38 Identities=42% Similarity=0.659 Sum_probs=35.0
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
+.++||||||+|++||++|+.++++|.+|+|+||.+..
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~ 44 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVF 44 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 45789999999999999999999999999999998754
No 158
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.37 E-value=3.7e-07 Score=70.63 Aligned_cols=31 Identities=42% Similarity=0.684 Sum_probs=28.9
Q ss_pred EECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 48 IVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 48 IVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
|||||++||++|..|++.|++|+|+||++.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence 8999999999999999999999999999876
No 159
>PRK09897 hypothetical protein; Provisional
Probab=98.37 E-value=1.6e-06 Score=94.16 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=30.6
Q ss_pred CCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF 78 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~G--i~v~viEr~~~~ 78 (572)
.+|+||||||+|+++|..|.+.+ ++|+|||+...+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~ 38 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA 38 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence 37999999999999999998864 689999997654
No 160
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.35 E-value=3.2e-06 Score=93.29 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=34.1
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.++||+|||+|++|+++|+.+++.|.+|+||||.+..
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~ 41 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV 41 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4689999999999999999999999999999998653
No 161
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.35 E-value=1.1e-05 Score=83.90 Aligned_cols=74 Identities=23% Similarity=0.372 Sum_probs=56.3
Q ss_pred cChhhHHHHHHHHHHhc-CceeeccCCcccccccccccceEEeccEEEEEeeeCCe-EEEEEEeccCCceeeEEEEecEE
Q 008258 152 FSQYKLNKLLLKQLEKL-NFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNIL 229 (572)
Q Consensus 152 l~q~~L~~~L~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~-v~v~~~~~~~g~~~~~~i~ad~v 229 (572)
++=..|.+.|.+.+.+. |+ +++++++|+++++.+++ +.|++.+..+| ...+++|++|
T Consensus 178 VnFG~LTr~l~~~l~~~~~~-------------------~~~~~~eV~~i~r~~dg~W~v~~~~~~~~--~~~~v~a~FV 236 (488)
T PF06039_consen 178 VNFGALTRQLVEYLQKQKGF-------------------ELHLNHEVTDIKRNGDGRWEVKVKDLKTG--EKREVRAKFV 236 (488)
T ss_pred ccHHHHHHHHHHHHHhCCCc-------------------EEEecCEeCeeEECCCCCEEEEEEecCCC--CeEEEECCEE
Confidence 44456777788887765 44 99999999999998877 88988755444 4568999999
Q ss_pred EeecCCChh-hhhhcCCc
Q 008258 230 IGTDGAGST-VRKLVGID 246 (572)
Q Consensus 230 VgADG~~S~-VR~~lg~~ 246 (572)
+..-|.+|. +-+..|++
T Consensus 237 fvGAGG~aL~LLqksgi~ 254 (488)
T PF06039_consen 237 FVGAGGGALPLLQKSGIP 254 (488)
T ss_pred EECCchHhHHHHHHcCCh
Confidence 888888775 45666764
No 162
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.35 E-value=4e-06 Score=86.61 Aligned_cols=38 Identities=34% Similarity=0.490 Sum_probs=34.8
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
...+||+|||||.+||++|..|.|.|++|+|+|.+...
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~ 42 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRV 42 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCc
Confidence 44589999999999999999999999999999988765
No 163
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.35 E-value=6.5e-06 Score=90.61 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=33.2
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
+.++||||||+|.|||++|+.+++ |.+|+||||.+..
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~ 43 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLK 43 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCC
Confidence 567899999999999999999975 9999999998653
No 164
>PRK06370 mercuric reductase; Validated
Probab=98.32 E-value=8.3e-06 Score=88.28 Aligned_cols=36 Identities=25% Similarity=0.476 Sum_probs=33.4
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
++.++||+||||||+|+++|+.|+++|.+|+||||.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 37 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG 37 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 355699999999999999999999999999999986
No 165
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.31 E-value=1.3e-05 Score=89.34 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=30.4
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 46 VlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
|||||+|+|||++|+.+++.|.+|+|+||.+.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~ 32 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDA 32 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCC
Confidence 79999999999999999999999999999873
No 166
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.31 E-value=1.1e-05 Score=87.23 Aligned_cols=40 Identities=23% Similarity=0.439 Sum_probs=35.5
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
|.+.++||+||||||+|+++|+.|+++|.+|+||||.+.+
T Consensus 1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~ 40 (461)
T PRK05249 1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNV 40 (461)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence 3456799999999999999999999999999999997543
No 167
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.31 E-value=1.7e-05 Score=83.71 Aligned_cols=62 Identities=21% Similarity=0.432 Sum_probs=49.6
Q ss_pred CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCCC--------------CCCeeeeC-hhHHHHHHhhcchHHHHHh
Q 008258 45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFST--------------HPQAHFIN-NRYALVFRKLDGLAEEIER 107 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~G--i~v~viEr~~~~~~--------------~~~a~~l~-~rt~e~l~~l~Gl~~~l~~ 107 (572)
.|+|||||++||++|+.|+|++ ++++|+|+.+...- .+...... +..++.++++ |+.+.+..
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eL-Gled~l~~ 80 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKEL-GLEDKLLW 80 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHh-CcHHhhcc
Confidence 5999999999999999999999 99999999865421 12223333 6678889999 99999873
No 168
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.31 E-value=1.1e-06 Score=83.47 Aligned_cols=33 Identities=36% Similarity=0.686 Sum_probs=30.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
||+||||||+|+++|..|++.|++++|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 699999999999999999999999999987654
No 169
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.29 E-value=1.1e-05 Score=87.56 Aligned_cols=35 Identities=34% Similarity=0.605 Sum_probs=32.8
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
...+||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 35699999999999999999999999999999985
No 170
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.28 E-value=1.4e-05 Score=86.68 Aligned_cols=36 Identities=28% Similarity=0.541 Sum_probs=33.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
+.++||+||||||+|+++|..|++.|.+|+|||+.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 446999999999999999999999999999999865
No 171
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.26 E-value=1.1e-05 Score=86.72 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=31.6
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
++||+||||||+|+++|+.++++|.+|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 589999999999999999999999999999984
No 172
>PRK14694 putative mercuric reductase; Provisional
Probab=98.25 E-value=2e-05 Score=85.49 Aligned_cols=35 Identities=14% Similarity=0.442 Sum_probs=33.2
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
..++||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~ 38 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG 38 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence 56799999999999999999999999999999986
No 173
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.25 E-value=3e-05 Score=85.69 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=34.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
+.++||||||+|.+||++|+.+++.|.+|+||||.+.
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~ 38 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENE 38 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3578999999999999999999999999999999883
No 174
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.25 E-value=1.7e-05 Score=85.88 Aligned_cols=35 Identities=40% Similarity=0.690 Sum_probs=32.8
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
.++||+||||||+|+++|..|+++|.+|+|+||.+
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 45899999999999999999999999999999865
No 175
>PLN02507 glutathione reductase
Probab=98.24 E-value=1.2e-05 Score=87.58 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=32.7
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
..++||+||||||+|+++|..++++|.+|+|||+.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~ 57 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELP 57 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 45689999999999999999999999999999973
No 176
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.24 E-value=4.2e-05 Score=84.92 Aligned_cols=38 Identities=24% Similarity=0.529 Sum_probs=34.5
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
..++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~ 51 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV 51 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 44689999999999999999999999999999997643
No 177
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.23 E-value=1.3e-05 Score=86.35 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=31.7
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
++||+||||||+|+++|+.|++.|.+|+|+||.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~ 34 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK 34 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence 589999999999999999999999999999985
No 178
>PLN03000 amine oxidase
Probab=98.21 E-value=0.00047 Score=78.26 Aligned_cols=37 Identities=41% Similarity=0.539 Sum_probs=34.0
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
...+|+|||||++||++|..|++.|++|+|+|++..+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ri 219 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRP 219 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcC
Confidence 3579999999999999999999999999999998754
No 179
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.21 E-value=1.8e-05 Score=84.56 Aligned_cols=190 Identities=18% Similarity=0.225 Sum_probs=101.0
Q ss_pred ccCccccCCCCCC---CCCCcccccCCCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC----CCCCeee--
Q 008258 16 IKTFPYPYGYTQC---RALSDSKTIVSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS----THPQAHF-- 86 (572)
Q Consensus 16 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~----~~~~a~~-- 86 (572)
.+..++.+.+.+. ..+|+... -....||+|||||.+|..+|+.|+|.|.+..+++.+.... .++.+..
T Consensus 12 ~~~~~~~v~~~qg~~~~~~s~s~~---~~~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtagl~~~ 88 (856)
T KOG2844|consen 12 EKGVPYQVKERQGTSVVARSPSTP---LPSTADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAGLLWQ 88 (856)
T ss_pred CCCCchhhcccCcccccccCcccc---CCCcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeeccccccccccceee
Confidence 4446666766555 44555553 3445899999999999999999999999955554444332 2222211
Q ss_pred --eChhHHHHHHh--hcchHHHHHh-cCCCcccccce--eee-eCC-----------CCCeee----eec---------C
Q 008258 87 --INNRYALVFRK--LDGLAEEIER-SQPPVDLWRKF--IYC-TSV-----------TGPILG----SVD---------H 134 (572)
Q Consensus 87 --l~~rt~e~l~~--l~Gl~~~l~~-~~~~~~~~~~~--~~~-~~~-----------~G~~~~----~~~---------~ 134 (572)
.++-.++.+.. . -+..++++ .+.+. .|... .+. .+. .|...+ -++ .
T Consensus 89 lr~~dv~~qlia~~~~-~l~~~leeEtgl~t-Gwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pL 166 (856)
T KOG2844|consen 89 LFPSDVELQLIAHTSR-VLYRELEEETGLHT-GWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPL 166 (856)
T ss_pred ccCCchhHHHHHHHHH-HHHHHHHHhcCCCc-ceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcc
Confidence 12222333321 1 23323333 22221 22110 000 000 000000 000 0
Q ss_pred CCcccc-ccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCe-EEEEEE
Q 008258 135 MQPQDF-EKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQC-INVIAS 212 (572)
Q Consensus 135 ~~~~~~-~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~-v~v~~~ 212 (572)
+..+++ ..+.+|.. ..++-..+.+.|...+.+.|+ .|..++.|+++....++ +-|...
T Consensus 167 Ln~d~v~g~Ly~P~D-G~~DP~~lC~ala~~A~~~GA-------------------~viE~cpV~~i~~~~~~~~gVeT~ 226 (856)
T KOG2844|consen 167 LNVDDVYGGLYSPGD-GVMDPAGLCQALARAASALGA-------------------LVIENCPVTGLHVETDKFGGVETP 226 (856)
T ss_pred cchhHheeeeecCCC-cccCHHHHHHHHHHHHHhcCc-------------------EEEecCCcceEEeecCCccceecc
Confidence 000111 11123332 356667889999999999998 77777788777644333 223322
Q ss_pred eccCCceeeEEEEecEEEeecCCChh
Q 008258 213 FLKEGKCTERNIQCNILIGTDGAGST 238 (572)
Q Consensus 213 ~~~~g~~~~~~i~ad~vVgADG~~S~ 238 (572)
-| .|++.++|.|.|....
T Consensus 227 ---~G-----~iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 227 ---HG-----SIETECVVNAAGVWAR 244 (856)
T ss_pred ---Cc-----ceecceEEechhHHHH
Confidence 34 5899999999998763
No 180
>PRK12839 hypothetical protein; Provisional
Probab=98.21 E-value=5.8e-05 Score=83.54 Aligned_cols=40 Identities=30% Similarity=0.361 Sum_probs=36.0
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
+++.++||+|||+|++|+++|+.+++.|.+|+||||.+..
T Consensus 4 ~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 43 (572)
T PRK12839 4 SMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC 43 (572)
T ss_pred CcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3466799999999999999999999999999999998653
No 181
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.20 E-value=4e-05 Score=85.03 Aligned_cols=38 Identities=32% Similarity=0.525 Sum_probs=34.9
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
..++||||||+|++||++|+.+++.|.+|+||||.+..
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~ 46 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF 46 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 45689999999999999999999999999999998754
No 182
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.20 E-value=2.4e-05 Score=84.91 Aligned_cols=33 Identities=36% Similarity=0.658 Sum_probs=31.7
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr 74 (572)
.++||+||||||+|+++|+.+++.|.+|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 468999999999999999999999999999998
No 183
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.19 E-value=2e-05 Score=86.95 Aligned_cols=37 Identities=27% Similarity=0.589 Sum_probs=33.8
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
..++||||||+| +|+++|+..++.|.+|+||||.+..
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~ 50 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYV 50 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCC
Confidence 457999999999 8999999999999999999998654
No 184
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.18 E-value=1.7e-05 Score=85.89 Aligned_cols=34 Identities=32% Similarity=0.542 Sum_probs=32.0
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
++||+||||||+|+++|+.++++|.+|+|||++.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~ 36 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS 36 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 4899999999999999999999999999999754
No 185
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.14 E-value=1.5e-05 Score=85.48 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=28.6
Q ss_pred EECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 48 IVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 48 IVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
|||+|.+||++|+.+++.|.+|+||||.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 799999999999999999999999999874
No 186
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.13 E-value=1e-06 Score=90.98 Aligned_cols=149 Identities=21% Similarity=0.327 Sum_probs=76.7
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCCeeeeChhHH--HHHHhhcchHHHHHhcCCCccccccee
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYA--LVFRKLDGLAEEIERSQPPVDLWRKFI 119 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~~~~~~~a~~l~~rt~--e~l~~l~Gl~~~l~~~~~~~~~~~~~~ 119 (572)
.+|+++||.||++|++|++|...+ ++++.+||++.+..++.-. +..-.| ..|++| .....|...+....
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gml-l~~~~~q~~fl~Dl-------vt~~~P~s~~sfln 73 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGML-LPGARMQVSFLKDL-------VTLRDPTSPFSFLN 73 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG---SS-B-SS-TTSSS-------STTT-TTSTTSHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccC-CCCCcccccccccc-------CcCcCCCCcccHHH
Confidence 379999999999999999999886 9999999999887765321 111111 112221 11111111111111
Q ss_pred eeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEE
Q 008258 120 YCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVS 199 (572)
Q Consensus 120 ~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~ 199 (572)
|.. ..|+.. .|. .......+|..+.+.|.-.+.+.+- .++++.+|++
T Consensus 74 YL~-~~~rl~---------~f~----~~~~~~p~R~ef~dYl~Wva~~~~~-------------------~v~~~~~V~~ 120 (341)
T PF13434_consen 74 YLH-EHGRLY---------EFY----NRGYFFPSRREFNDYLRWVAEQLDN-------------------QVRYGSEVTS 120 (341)
T ss_dssp HHH-HTT-HH---------HHH----HH--SS-BHHHHHHHHHHHHCCGTT-------------------TEEESEEEEE
T ss_pred HHH-HcCChh---------hhh----hcCCCCCCHHHHHHHHHHHHHhCCC-------------------ceEECCEEEE
Confidence 100 112111 000 0011234677777777666655432 5899999999
Q ss_pred EeeeCC----eEEEEEEeccCCceeeEEEEecEEEeecCC
Q 008258 200 VSATDQ----CINVIASFLKEGKCTERNIQCNILIGTDGA 235 (572)
Q Consensus 200 v~~~~~----~v~v~~~~~~~g~~~~~~i~ad~vVgADG~ 235 (572)
|+..++ .++|++.. .+| ...++.|+-||-|-|.
T Consensus 121 I~~~~~~~~~~~~V~~~~-~~g--~~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 121 IEPDDDGDEDLFRVTTRD-SDG--DGETYRARNVVLATGG 157 (341)
T ss_dssp EEEEEETTEEEEEEEEEE-TTS---EEEEEESEEEE----
T ss_pred EEEecCCCccEEEEEEee-cCC--CeeEEEeCeEEECcCC
Confidence 987654 37777753 233 3458999999999994
No 187
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.11 E-value=8.3e-05 Score=80.93 Aligned_cols=54 Identities=26% Similarity=0.310 Sum_probs=41.7
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC-CCee-----eeChhHHHHHHh
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-PQAH-----FINNRYALVFRK 97 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~-~~a~-----~l~~rt~e~l~~ 97 (572)
+||+|||+||+|+++|..|++.|++|+|||+....... +.++ .++..+.++++-
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 60 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNV 60 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcccccccccccccccHHHHHHH
Confidence 59999999999999999999999999999999877532 2232 344455555543
No 188
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.09 E-value=1.8e-05 Score=87.76 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=31.3
Q ss_pred CEEEECCCHHHHHHHHHHH----hCCCCEEEEcCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLT----KLGIKCSVLEKNKAF 78 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La----~~Gi~v~viEr~~~~ 78 (572)
||||||||.|||++|+.++ +.|.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 8999999999999999998 679999999998643
No 189
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.09 E-value=4.3e-05 Score=79.95 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=35.3
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.+.++||+|||||-+|.-+|+-.+-+|+++.++|+...-
T Consensus 64 ~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~ 102 (680)
T KOG0042|consen 64 STHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFA 102 (680)
T ss_pred cCCcccEEEECCCccCcceeehhhcccceeEEEeccccc
Confidence 355699999999999999999999999999999998754
No 190
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.07 E-value=5e-05 Score=79.90 Aligned_cols=107 Identities=19% Similarity=0.383 Sum_probs=78.0
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
-+|+|||||++|+-+|..|++.|.+|+++|+.+.+... .+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~---------------~~------------------------- 181 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS---------------LM------------------------- 181 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch---------------hC-------------------------
Confidence 47999999999999999999999999999987643100 00
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
+ ..+...+.+.+++.|+ ++++++++++++.+
T Consensus 182 -----------------------------~-~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~~ 212 (377)
T PRK04965 182 -----------------------------P-PEVSSRLQHRLTEMGV-------------------HLLLKSQLQGLEKT 212 (377)
T ss_pred -----------------------------C-HHHHHHHHHHHHhCCC-------------------EEEECCeEEEEEcc
Confidence 0 1122345566667776 88899999999887
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeecCCCh--hhhhhcCCc
Q 008258 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS--TVRKLVGID 246 (572)
Q Consensus 204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S--~VR~~lg~~ 246 (572)
++++.+++. +|+ ++.||+||.|.|..+ .+.+..|+.
T Consensus 213 ~~~~~v~~~---~g~----~i~~D~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 213 DSGIRATLD---SGR----SIEVDAVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred CCEEEEEEc---CCc----EEECCEEEECcCCCcchHHHHHCCCC
Confidence 777666654 453 689999999999865 344555554
No 191
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.07 E-value=3.3e-06 Score=91.68 Aligned_cols=36 Identities=42% Similarity=0.688 Sum_probs=33.9
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.+||+|||||+.||++|+.|+|+|++|+|+||+..+
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~ 38 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRV 38 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCC
Confidence 479999999999999999999999999999998765
No 192
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.04 E-value=4.1e-05 Score=82.90 Aligned_cols=31 Identities=39% Similarity=0.734 Sum_probs=30.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr 74 (572)
+||+||||||+|+++|..|+++|.+|+|||+
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~ 32 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK 32 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 7999999999999999999999999999998
No 193
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.03 E-value=9.9e-05 Score=88.25 Aligned_cols=39 Identities=26% Similarity=0.381 Sum_probs=35.6
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.+.++||||||+|.||+++|+..++.|.+|+|+||.+..
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~ 444 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKL 444 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 356799999999999999999999999999999998754
No 194
>PRK13748 putative mercuric reductase; Provisional
Probab=98.03 E-value=8.6e-05 Score=82.45 Aligned_cols=35 Identities=17% Similarity=0.447 Sum_probs=33.0
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
..++||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus 96 ~~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 96 ERPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 45799999999999999999999999999999986
No 195
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.03 E-value=0.00012 Score=79.42 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=32.8
Q ss_pred cCCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~----Gi~v~viEr~~~~ 78 (572)
+.+|+|||||++||++|..|++. |.+|+|+|+.+.+
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~ 61 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVP 61 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCC
Confidence 46899999999999999999995 6899999999865
No 196
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.02 E-value=6.4e-05 Score=82.32 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=36.6
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 008258 40 NEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (572)
Q Consensus 40 ~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~ 79 (572)
+..++||||||||.|||.+|+.++..|.+|+|+||.+...
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 4567999999999999999999999999999999987654
No 197
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.01 E-value=3.2e-05 Score=81.34 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=32.7
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
++|+|||||++|+.+|+.|+++|++|+|||+++..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 48999999999999999999999999999988764
No 198
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.00 E-value=1.3e-05 Score=92.98 Aligned_cols=36 Identities=33% Similarity=0.601 Sum_probs=33.1
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
..+|+|||||||||++|..|++.|++|+|||+.+.+
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~ 341 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDL 341 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Confidence 468999999999999999999999999999987643
No 199
>PRK14727 putative mercuric reductase; Provisional
Probab=98.00 E-value=0.00017 Score=78.37 Aligned_cols=40 Identities=18% Similarity=0.383 Sum_probs=35.4
Q ss_pred CCCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 38 VSNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 38 ~~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
.-.+.++||+||||||+|+++|..|+++|.+|+|+||...
T Consensus 11 ~~~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~ 50 (479)
T PRK14727 11 TRSKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADV 50 (479)
T ss_pred ccCCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc
Confidence 3445679999999999999999999999999999998744
No 200
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.00 E-value=0.00015 Score=84.56 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=34.2
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
..++||||||||.|||++|+.+++.|.+|+|+||.+.
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 3568999999999999999999999999999999874
No 201
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.99 E-value=2.9e-05 Score=84.72 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=31.8
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
..+||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 3589999999999999999999999999999974
No 202
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.97 E-value=3.7e-05 Score=82.76 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=30.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAF 78 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~G--i~v~viEr~~~~ 78 (572)
+|+|||||++|+++|..|++.| .+|+|||+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 6999999999999999999985 589999998764
No 203
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.96 E-value=5.9e-05 Score=73.92 Aligned_cols=54 Identities=26% Similarity=0.375 Sum_probs=42.8
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCC---------CeeeeChhHHH
Q 008258 40 NEAVVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFSTHP---------QAHFINNRYAL 93 (572)
Q Consensus 40 ~~~~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~~~~~---------~a~~l~~rt~e 93 (572)
...++|.+|||||++||+.|..|.-+ +.+|.|+|+...+..+. .++...|.++.
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLK 109 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLK 109 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccc
Confidence 35679999999999999999999877 99999999998775432 23455566654
No 204
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.95 E-value=0.00014 Score=76.01 Aligned_cols=33 Identities=33% Similarity=0.487 Sum_probs=31.1
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
||+|||+|.|||++|+.|++. ++|+|+-|.+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 899999999999999999998 999999998765
No 205
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.93 E-value=1.2e-05 Score=86.87 Aligned_cols=60 Identities=23% Similarity=0.340 Sum_probs=46.4
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--------C-----Ceee---eChhHHHHHHhhcchHHHH
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH--------P-----QAHF---INNRYALVFRKLDGLAEEI 105 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~--------~-----~a~~---l~~rt~e~l~~l~Gl~~~l 105 (572)
+|+|||||++||++|+.|+++|++|+|+|+++.+.-. + ..+. ..++.+++|+++ |+.+.+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~l-g~~~~~ 76 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKEL-NIEDRL 76 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHc-CCccce
Confidence 5899999999999999999999999999998753210 0 1121 247889999999 886543
No 206
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.92 E-value=7.1e-05 Score=80.42 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=31.6
Q ss_pred CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAFS 79 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~~ 79 (572)
+|+|||||++|+.+|..|++. +.+|+|||+.+...
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 799999999999999999987 68999999987653
No 207
>PRK07208 hypothetical protein; Provisional
Probab=97.92 E-value=1.1e-05 Score=87.69 Aligned_cols=38 Identities=37% Similarity=0.545 Sum_probs=34.5
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
+...||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~ 39 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVV 39 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 44569999999999999999999999999999998764
No 208
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.91 E-value=4.7e-05 Score=69.47 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=27.2
Q ss_pred EEECCCHHHHHHHHHHHhC-----CCCEEEEcCCCC
Q 008258 47 LIVGAGPVGLVLSILLTKL-----GIKCSVLEKNKA 77 (572)
Q Consensus 47 lIVGaGpaGL~~A~~La~~-----Gi~v~viEr~~~ 77 (572)
+||||||+|++++..|.++ ..+++|||+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999887 578999999543
No 209
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.88 E-value=0.00014 Score=85.76 Aligned_cols=37 Identities=30% Similarity=0.559 Sum_probs=34.2
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
..+||+|||||||||++|+.|++.|++|+|+|+.+.+
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~ 198 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEA 198 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 3579999999999999999999999999999998664
No 210
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.87 E-value=0.00018 Score=77.87 Aligned_cols=103 Identities=20% Similarity=0.328 Sum_probs=75.7
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~ 122 (572)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+. +++.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-------------------~~~d-------------------- 214 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-------------------PGTD-------------------- 214 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------CCCC--------------------
Confidence 3579999999999999999999999999999865431 0100
Q ss_pred CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (572)
Q Consensus 123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~ 202 (572)
..+...+.+.+++.|+ +++.++++++++.
T Consensus 215 --------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~V~~i~~ 243 (466)
T PRK06115 215 --------------------------------TETAKTLQKALTKQGM-------------------KFKLGSKVTGATA 243 (466)
T ss_pred --------------------------------HHHHHHHHHHHHhcCC-------------------EEEECcEEEEEEE
Confidence 1122345566666776 8999999999987
Q ss_pred eCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (572)
Q Consensus 203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S 237 (572)
+++++.+++...++| ...++.+|.||-|-|...
T Consensus 244 ~~~~v~v~~~~~~~g--~~~~i~~D~vi~a~G~~p 276 (466)
T PRK06115 244 GADGVSLTLEPAAGG--AAETLQADYVLVAIGRRP 276 (466)
T ss_pred cCCeEEEEEEEcCCC--ceeEEEeCEEEEccCCcc
Confidence 777777766532233 234689999999999764
No 211
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.86 E-value=0.00021 Score=77.38 Aligned_cols=101 Identities=20% Similarity=0.340 Sum_probs=74.9
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~ 122 (572)
.-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+. +.+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-------------------~~~--------------------- 209 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL-------------------PGE--------------------- 209 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC-------------------CCC---------------------
Confidence 3589999999999999999999999999999876431 000
Q ss_pred CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (572)
Q Consensus 123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~ 202 (572)
...+...+.+.+++.|+ ++++++++++++.
T Consensus 210 -------------------------------~~~~~~~~~~~l~~~gi-------------------~i~~~~~v~~i~~ 239 (461)
T TIGR01350 210 -------------------------------DAEVSKVVAKALKKKGV-------------------KILTNTKVTAVEK 239 (461)
T ss_pred -------------------------------CHHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEE
Confidence 01222335566667776 8999999999988
Q ss_pred eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (572)
Q Consensus 203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~ 238 (572)
+++++.++.. +|. +.++.+|.||.|.|....
T Consensus 240 ~~~~v~v~~~---~g~--~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 240 NDDQVVYENK---GGE--TETLTGEKVLVAVGRKPN 270 (461)
T ss_pred eCCEEEEEEe---CCc--EEEEEeCEEEEecCCccc
Confidence 7777766543 342 236899999999997664
No 212
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.85 E-value=1.5e-05 Score=85.64 Aligned_cols=35 Identities=29% Similarity=0.542 Sum_probs=32.8
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
++||+||||||+|+++|+.|+++|.+|+|||+.+.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~ 37 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA 37 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence 58999999999999999999999999999998753
No 213
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.85 E-value=0.00017 Score=77.97 Aligned_cols=100 Identities=21% Similarity=0.323 Sum_probs=74.4
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~ 122 (572)
.-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+. +.+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------~~~d-------------------- 215 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-------------------SFLD-------------------- 215 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------CcCC--------------------
Confidence 3579999999999999999999999999999876431 0000
Q ss_pred CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (572)
Q Consensus 123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~ 202 (572)
..+...|.+.+++.|+ +++.++++++++.
T Consensus 216 --------------------------------~~~~~~l~~~l~~~gI-------------------~v~~~~~v~~i~~ 244 (461)
T PRK05249 216 --------------------------------DEISDALSYHLRDSGV-------------------TIRHNEEVEKVEG 244 (461)
T ss_pred --------------------------------HHHHHHHHHHHHHcCC-------------------EEEECCEEEEEEE
Confidence 1122345556666676 8899999999987
Q ss_pred eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (572)
Q Consensus 203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V 239 (572)
+++++.+++. +|. ++++|.||.|.|.+...
T Consensus 245 ~~~~~~v~~~---~g~----~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 245 GDDGVIVHLK---SGK----KIKADCLLYANGRTGNT 274 (461)
T ss_pred eCCeEEEEEC---CCC----EEEeCEEEEeecCCccc
Confidence 7777666543 443 68999999999976543
No 214
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.84 E-value=0.00027 Score=75.35 Aligned_cols=110 Identities=26% Similarity=0.402 Sum_probs=81.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (572)
...-.++|||||+.|+=+|..+++.|.+|+|+|+.+.+- ++..
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-------------------p~~D------------------ 213 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-------------------PGED------------------ 213 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------CcCC------------------
Confidence 344579999999999999999999999999999987752 1111
Q ss_pred eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (572)
Q Consensus 121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v 200 (572)
.++.+.+.+.+++.|+ +++.+++++.+
T Consensus 214 ----------------------------------~ei~~~~~~~l~~~gv-------------------~i~~~~~v~~~ 240 (454)
T COG1249 214 ----------------------------------PEISKELTKQLEKGGV-------------------KILLNTKVTAV 240 (454)
T ss_pred ----------------------------------HHHHHHHHHHHHhCCe-------------------EEEccceEEEE
Confidence 1334456666666555 89999999999
Q ss_pred eeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCc
Q 008258 201 SATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGID 246 (572)
Q Consensus 201 ~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~ 246 (572)
+..++++.+++. +|... ++++|.|+.|-|..- --+.||++
T Consensus 241 ~~~~~~v~v~~~---~g~~~--~~~ad~vLvAiGR~P-n~~~LgLe 280 (454)
T COG1249 241 EKKDDGVLVTLE---DGEGG--TIEADAVLVAIGRKP-NTDGLGLE 280 (454)
T ss_pred EecCCeEEEEEe---cCCCC--EEEeeEEEEccCCcc-CCCCCChh
Confidence 998887777776 44211 688999999999653 33334443
No 215
>PRK06116 glutathione reductase; Validated
Probab=97.84 E-value=1.6e-05 Score=85.78 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=32.2
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
.++||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4689999999999999999999999999999985
No 216
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.82 E-value=1.7e-05 Score=85.14 Aligned_cols=35 Identities=29% Similarity=0.508 Sum_probs=33.1
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
++||+||||||+|+++|+.|++.|.+|+||||.+.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~ 37 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA 37 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 58999999999999999999999999999999764
No 217
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.82 E-value=0.00083 Score=67.79 Aligned_cols=55 Identities=15% Similarity=0.366 Sum_probs=43.0
Q ss_pred ceEEeccEEEEEeeeCC-eEEEEEEeccCCceeeEEEEecEEEeecCCChhhhhhcCCc
Q 008258 189 REILMGHECVSVSATDQ-CINVIASFLKEGKCTERNIQCNILIGTDGAGSTVRKLVGID 246 (572)
Q Consensus 189 ~~i~~g~~v~~v~~~~~-~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR~~lg~~ 246 (572)
.+++.+++|++.+.+.+ .|.+++....++ +.++++||.+..|-|.+ |.-+-||++
T Consensus 267 ikF~l~tkv~~a~~~~dg~v~i~ve~ak~~--k~~tle~DvlLVsiGRr-P~t~GLgle 322 (506)
T KOG1335|consen 267 IKFKLGTKVTSATRNGDGPVEIEVENAKTG--KKETLECDVLLVSIGRR-PFTEGLGLE 322 (506)
T ss_pred ceeEeccEEEEeeccCCCceEEEEEecCCC--ceeEEEeeEEEEEccCc-ccccCCChh
Confidence 38999999999999887 788888765555 46689999999999975 445555543
No 218
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.82 E-value=2.8e-05 Score=83.68 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=34.6
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHh--CCCCEEEEcCCCCC
Q 008258 40 NEAVVPVLIVGAGPVGLVLSILLTK--LGIKCSVLEKNKAF 78 (572)
Q Consensus 40 ~~~~~dVlIVGaGpaGL~~A~~La~--~Gi~v~viEr~~~~ 78 (572)
.....+|+||||||||+.+|..|++ .|++|+||||.+.+
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 3445789999999999999999987 69999999999865
No 219
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.82 E-value=0.00026 Score=76.62 Aligned_cols=100 Identities=20% Similarity=0.364 Sum_probs=74.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
-+|+|||||++|+-+|..|++.|.+|+++|+.+.+. +.+.
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------~~~~--------------------- 212 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-------------------PGED--------------------- 212 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-------------------CcCC---------------------
Confidence 479999999999999999999999999999876531 0000
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
..+...+.+.+++.|+ ++++++++++++.+
T Consensus 213 -------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~V~~i~~~ 242 (462)
T PRK06416 213 -------------------------------KEISKLAERALKKRGI-------------------KIKTGAKAKKVEQT 242 (462)
T ss_pred -------------------------------HHHHHHHHHHHHHcCC-------------------EEEeCCEEEEEEEe
Confidence 0122334555666676 89999999999987
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (572)
Q Consensus 204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S 237 (572)
++++.+++. +++ .+.++.+|.||-|-|...
T Consensus 243 ~~~v~v~~~--~gg--~~~~i~~D~vi~a~G~~p 272 (462)
T PRK06416 243 DDGVTVTLE--DGG--KEETLEADYVLVAVGRRP 272 (462)
T ss_pred CCEEEEEEE--eCC--eeEEEEeCEEEEeeCCcc
Confidence 777766654 222 334789999999999764
No 220
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.81 E-value=0.00019 Score=76.01 Aligned_cols=98 Identities=22% Similarity=0.342 Sum_probs=71.8
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+. ... .
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l----------------~~~--~---------------------- 184 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVM----------------GRN--A---------------------- 184 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcch----------------hhh--c----------------------
Confidence 479999999999999999999999999999876431 000 0
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
...+...+.+.+++.|+ ++++++++++++.
T Consensus 185 ------------------------------~~~~~~~l~~~l~~~GV-------------------~i~~~~~V~~i~~- 214 (396)
T PRK09754 185 ------------------------------PPPVQRYLLQRHQQAGV-------------------RILLNNAIEHVVD- 214 (396)
T ss_pred ------------------------------CHHHHHHHHHHHHHCCC-------------------EEEeCCeeEEEEc-
Confidence 01223345566667776 8889999999876
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (572)
Q Consensus 204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~ 238 (572)
++.+.+++. +|+ ++.||+||.|-|....
T Consensus 215 ~~~~~v~l~---~g~----~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 215 GEKVELTLQ---SGE----TLQADVVIYGIGISAN 242 (396)
T ss_pred CCEEEEEEC---CCC----EEECCEEEECCCCChh
Confidence 455555553 453 6899999999998654
No 221
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.79 E-value=2.4e-05 Score=84.41 Aligned_cols=38 Identities=29% Similarity=0.435 Sum_probs=34.9
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
....+|+|||||+|||+||..|.+.|++|+|+|.+..+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRv 50 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRV 50 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 44579999999999999999999999999999998765
No 222
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.78 E-value=2.2e-05 Score=85.69 Aligned_cols=35 Identities=34% Similarity=0.591 Sum_probs=33.1
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.||+|||||++||++|..|++.|++|+|+||++.+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~ 36 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP 36 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 58999999999999999999999999999999765
No 223
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.77 E-value=0.00025 Score=77.01 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=31.5
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
++||+||||||+|+.+|+.+++.|.+|.|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 489999999999999999999999999999975
No 224
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.77 E-value=0.0003 Score=76.46 Aligned_cols=102 Identities=21% Similarity=0.335 Sum_probs=75.0
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+ ..
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------~~---------------------- 222 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA-------------------AA---------------------- 222 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC-------------------cC----------------------
Confidence 4899999999999999999999999999998764310 00
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
+ ..+...+.+.+.+.|+ +++.++++++++.+
T Consensus 223 -----------------------------d-~~~~~~~~~~l~~~gi-------------------~i~~~~~v~~i~~~ 253 (475)
T PRK06327 223 -----------------------------D-EQVAKEAAKAFTKQGL-------------------DIHLGVKIGEIKTG 253 (475)
T ss_pred -----------------------------C-HHHHHHHHHHHHHcCc-------------------EEEeCcEEEEEEEc
Confidence 0 1122334455556676 89999999999887
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (572)
Q Consensus 204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~ 238 (572)
++++.+++. ++++++.++.+|.||-|-|....
T Consensus 254 ~~~v~v~~~---~~~g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 254 GKGVSVAYT---DADGEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred CCEEEEEEE---eCCCceeEEEcCEEEEccCCccC
Confidence 777776665 22223457899999999997654
No 225
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.76 E-value=2.6e-05 Score=85.11 Aligned_cols=35 Identities=31% Similarity=0.388 Sum_probs=33.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
+||+|||||++||++|..|+++|.+|+|+||+..+
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 35 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP 35 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 58999999999999999999999999999999775
No 226
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.75 E-value=0.0003 Score=76.21 Aligned_cols=32 Identities=28% Similarity=0.673 Sum_probs=30.6
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
||+||||||+|+.+|..++++|.+|+|+||.+
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 79999999999999999999999999999864
No 227
>PLN02576 protoporphyrinogen oxidase
Probab=97.74 E-value=3.4e-05 Score=84.36 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=34.5
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~-Gi~v~viEr~~~~ 78 (572)
...+||+|||||++||++|..|++. |++|+|+|+++.+
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rv 48 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRV 48 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 3456999999999999999999999 9999999998765
No 228
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.74 E-value=0.00055 Score=74.04 Aligned_cols=101 Identities=20% Similarity=0.360 Sum_probs=72.2
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~ 122 (572)
.-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+. ++..
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-------------------~~~d-------------------- 210 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-------------------PGED-------------------- 210 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------cccc--------------------
Confidence 3589999999999999999999999999999875431 0000
Q ss_pred CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (572)
Q Consensus 123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~ 202 (572)
..+.+.+.+.+++.|+ ++++++++++++.
T Consensus 211 --------------------------------~e~~~~l~~~L~~~GI-------------------~i~~~~~V~~i~~ 239 (458)
T PRK06912 211 --------------------------------EDIAHILREKLENDGV-------------------KIFTGAALKGLNS 239 (458)
T ss_pred --------------------------------HHHHHHHHHHHHHCCC-------------------EEEECCEEEEEEE
Confidence 1122345566667776 8899999999987
Q ss_pred eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (572)
Q Consensus 203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V 239 (572)
++..+. +.. +|. +.++.+|+||-|.|....+
T Consensus 240 ~~~~v~--~~~--~g~--~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 240 YKKQAL--FEY--EGS--IQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred cCCEEE--EEE--CCc--eEEEEeCEEEEecCCccCC
Confidence 655443 331 332 2368999999999976543
No 229
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.73 E-value=0.0002 Score=75.90 Aligned_cols=35 Identities=17% Similarity=0.414 Sum_probs=31.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAF 78 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~~ 78 (572)
.+|+|||||+||+++|..|++.|. +|+|+++.+..
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 479999999999999999999986 79999987654
No 230
>PLN02487 zeta-carotene desaturase
Probab=97.72 E-value=6.8e-05 Score=82.39 Aligned_cols=63 Identities=22% Similarity=0.341 Sum_probs=49.8
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC--------CC-----Ceee---eChhHHHHHHhhcchHHHHH
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST--------HP-----QAHF---INNRYALVFRKLDGLAEEIE 106 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~--------~~-----~a~~---l~~rt~e~l~~l~Gl~~~l~ 106 (572)
..+|+|||||++||++|+.|++.|++|+|+|+.+.+.- .+ ..|. ..++.+++++++ |+.+++.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~L-Gl~~~~~ 153 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKV-GADENLL 153 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhc-CCccccc
Confidence 45999999999999999999999999999999886531 11 1122 236789999999 9877654
No 231
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.72 E-value=3.6e-05 Score=75.91 Aligned_cols=51 Identities=20% Similarity=0.419 Sum_probs=41.1
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhc
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLD 99 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~ 99 (572)
++||+|||||.||+++|+.|+++|.+++||.+.... .-.+..++++|..+|
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQsA------LhfsSGslDlL~~lP 52 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQSA------LHFSSGSLDLLGRLP 52 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChhh------hhcccccHHHhhcCC
Confidence 589999999999999999999999999999877543 333445566766653
No 232
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.71 E-value=0.00044 Score=74.91 Aligned_cols=101 Identities=14% Similarity=0.290 Sum_probs=72.9
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+ ...
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------~~d--------------------- 206 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP-------------------REE--------------------- 206 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC-------------------ccC---------------------
Confidence 5899999999999999999999999999998754310 000
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
..+...+.+.+++.|+ ++++++++++++.+
T Consensus 207 -------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~V~~i~~~ 236 (463)
T TIGR02053 207 -------------------------------PEISAAVEEALAEEGI-------------------EVVTSAQVKAVSVR 236 (463)
T ss_pred -------------------------------HHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEEc
Confidence 0112334455566666 88999999999877
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (572)
Q Consensus 204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~ 238 (572)
++.+.+++.. ++. ..++.+|.||-|-|....
T Consensus 237 ~~~~~v~~~~--~~~--~~~i~~D~ViiA~G~~p~ 267 (463)
T TIGR02053 237 GGGKIITVEK--PGG--QGEVEADELLVATGRRPN 267 (463)
T ss_pred CCEEEEEEEe--CCC--ceEEEeCEEEEeECCCcC
Confidence 6666666542 121 236899999999997543
No 233
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.70 E-value=3.6e-05 Score=83.40 Aligned_cols=34 Identities=41% Similarity=0.681 Sum_probs=32.1
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
.++||+||||||+|+++|+.|+++|.+|+|||+.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3589999999999999999999999999999985
No 234
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.70 E-value=0.00048 Score=74.63 Aligned_cols=102 Identities=23% Similarity=0.394 Sum_probs=74.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+. +..
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------~~~---------------------- 211 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-------------------PNE---------------------- 211 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------Ccc----------------------
Confidence 479999999999999999999999999999765431 000
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
+ ..+.+.+.+.+++.|+ ++++++++++++.+
T Consensus 212 -----------------------------d-~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~~ 242 (466)
T PRK07818 212 -----------------------------D-AEVSKEIAKQYKKLGV-------------------KILTGTKVESIDDN 242 (466)
T ss_pred -----------------------------C-HHHHHHHHHHHHHCCC-------------------EEEECCEEEEEEEe
Confidence 0 1223345566677776 89999999999877
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (572)
Q Consensus 204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~ 238 (572)
++.+.+++.. .+|+ ..++.+|.||-|-|....
T Consensus 243 ~~~~~v~~~~-~~g~--~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 243 GSKVTVTVSK-KDGK--AQELEADKVLQAIGFAPR 274 (466)
T ss_pred CCeEEEEEEe-cCCC--eEEEEeCEEEECcCcccC
Confidence 6666665542 2342 347899999999997543
No 235
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.70 E-value=0.00051 Score=74.50 Aligned_cols=102 Identities=20% Similarity=0.318 Sum_probs=72.1
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+. +.+.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-------------------~~~d--------------------- 214 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-------------------PAAD--------------------- 214 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-------------------CcCC---------------------
Confidence 489999999999999999999999999999876531 0000
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
..+...+.+.+++. + ++++++++++++.+
T Consensus 215 -------------------------------~~~~~~~~~~l~~~-v-------------------~i~~~~~v~~i~~~ 243 (471)
T PRK06467 215 -------------------------------KDIVKVFTKRIKKQ-F-------------------NIMLETKVTAVEAK 243 (471)
T ss_pred -------------------------------HHHHHHHHHHHhhc-e-------------------EEEcCCEEEEEEEc
Confidence 01122333444443 4 78889999999877
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (572)
Q Consensus 204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V 239 (572)
++++.+++. ++++...++++|.||-|-|.+..+
T Consensus 244 ~~~~~v~~~---~~~~~~~~i~~D~vi~a~G~~pn~ 276 (471)
T PRK06467 244 EDGIYVTME---GKKAPAEPQRYDAVLVAVGRVPNG 276 (471)
T ss_pred CCEEEEEEE---eCCCcceEEEeCEEEEeecccccC
Confidence 777776664 222123469999999999986543
No 236
>PRK06370 mercuric reductase; Validated
Probab=97.69 E-value=0.0005 Score=74.44 Aligned_cols=101 Identities=18% Similarity=0.314 Sum_probs=73.7
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+. ++..
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------~~~~--------------------- 211 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL-------------------PRED--------------------- 211 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC-------------------cccC---------------------
Confidence 589999999999999999999999999999876541 0000
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
..+.+.+.+.+++.|+ ++++++++++++.+
T Consensus 212 -------------------------------~~~~~~l~~~l~~~GV-------------------~i~~~~~V~~i~~~ 241 (463)
T PRK06370 212 -------------------------------EDVAAAVREILEREGI-------------------DVRLNAECIRVERD 241 (463)
T ss_pred -------------------------------HHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEEc
Confidence 0122334555666776 89999999999887
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (572)
Q Consensus 204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~ 238 (572)
++++.+++... ++ ..++.+|.||-|-|....
T Consensus 242 ~~~~~v~~~~~-~~---~~~i~~D~Vi~A~G~~pn 272 (463)
T PRK06370 242 GDGIAVGLDCN-GG---APEITGSHILVAVGRVPN 272 (463)
T ss_pred CCEEEEEEEeC-CC---ceEEEeCEEEECcCCCcC
Confidence 77766665421 11 236899999999997543
No 237
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.69 E-value=4.9e-05 Score=82.34 Aligned_cols=61 Identities=23% Similarity=0.343 Sum_probs=46.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC--------CC-----Ceee---eChhHHHHHHhhcchHHHHH
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFST--------HP-----QAHF---INNRYALVFRKLDGLAEEIE 106 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~--------~~-----~a~~---l~~rt~e~l~~l~Gl~~~l~ 106 (572)
+|+|||||++||++|..|+++|++|+|+|+++.+.- .+ ..|. ..++..++++++ |+.+.+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~l-g~~~~~~ 77 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKV-GAEDNLL 77 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHc-CCccccc
Confidence 589999999999999999999999999999876521 11 1122 236678888888 8876653
No 238
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.68 E-value=0.00081 Score=72.72 Aligned_cols=32 Identities=22% Similarity=0.590 Sum_probs=30.6
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
+|+||||||+|+++|..|++.|.+|+||||.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 79999999999999999999999999999864
No 239
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.67 E-value=4.5e-05 Score=79.48 Aligned_cols=35 Identities=37% Similarity=0.581 Sum_probs=32.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
+||+|||||++||++|..|++.|.+|+|+|+++..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 69999999999999999999999999999997643
No 240
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.66 E-value=4.2e-05 Score=82.74 Aligned_cols=33 Identities=39% Similarity=0.650 Sum_probs=31.5
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr 74 (572)
.++||+||||||+|+++|..|++.|.+|+|||+
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~ 34 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK 34 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 358999999999999999999999999999998
No 241
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.65 E-value=3.9e-05 Score=83.97 Aligned_cols=33 Identities=36% Similarity=0.562 Sum_probs=31.5
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 46 VlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
|+|||||++||++|..|++.|++|+|+||+..+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~ 33 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKP 33 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 699999999999999999999999999999875
No 242
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.64 E-value=0.00031 Score=75.17 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=33.0
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
..+.+|||||||.+|+.+|..|.+.+++|+|||+++..
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 34468999999999999999998778999999987654
No 243
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00021 Score=66.74 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=31.6
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
....+|+|||.||++-++|+++++..++-+++|-.
T Consensus 6 ~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~ 40 (322)
T KOG0404|consen 6 THNENVVIIGSGPAAHTAAIYAARAELKPLLFEGM 40 (322)
T ss_pred eeeeeEEEEccCchHHHHHHHHhhcccCceEEeee
Confidence 44568999999999999999999999999999954
No 244
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.62 E-value=5.6e-05 Score=87.38 Aligned_cols=37 Identities=32% Similarity=0.557 Sum_probs=33.8
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
...+|+|||||||||++|..|++.|++|+|+|+.+.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP 572 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 3469999999999999999999999999999998654
No 245
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=5.3e-05 Score=79.91 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=33.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~ 79 (572)
+|+|+|||+|||++|..|+.+|++|+|+|+++.+.
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~G 36 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLG 36 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccC
Confidence 79999999999999999999999999999998763
No 246
>PTZ00058 glutathione reductase; Provisional
Probab=97.62 E-value=5.4e-05 Score=83.25 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=34.0
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 39 SNEAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 39 ~~~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
+...++||+||||||+|.++|+.+++.|.+|+||||.
T Consensus 44 ~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 44 KPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred CCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 3356799999999999999999999999999999986
No 247
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.61 E-value=5.8e-05 Score=78.04 Aligned_cols=37 Identities=27% Similarity=0.565 Sum_probs=34.3
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~ 79 (572)
.-+|||||||+||+++|+.|++.|++|.++||.+...
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG 160 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG 160 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence 3579999999999999999999999999999998763
No 248
>PRK06116 glutathione reductase; Validated
Probab=97.61 E-value=0.00061 Score=73.52 Aligned_cols=98 Identities=19% Similarity=0.302 Sum_probs=72.1
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~ 122 (572)
.-+|+|||||++|+-+|..|++.|.+|+++++.+.+. . ...
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----------------~---~~~-------------------- 207 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL----------------R---GFD-------------------- 207 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc----------------c---ccC--------------------
Confidence 3579999999999999999999999999999875431 0 000
Q ss_pred CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (572)
Q Consensus 123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~ 202 (572)
..+...+.+.+++.|+ ++++++++.+++.
T Consensus 208 --------------------------------~~~~~~l~~~L~~~GV-------------------~i~~~~~V~~i~~ 236 (450)
T PRK06116 208 --------------------------------PDIRETLVEEMEKKGI-------------------RLHTNAVPKAVEK 236 (450)
T ss_pred --------------------------------HHHHHHHHHHHHHCCc-------------------EEECCCEEEEEEE
Confidence 0122344556667776 8999999999987
Q ss_pred eCCe-EEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258 203 TDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (572)
Q Consensus 203 ~~~~-v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S 237 (572)
++++ +++++. +|+ ++.+|.||.|-|.+.
T Consensus 237 ~~~g~~~v~~~---~g~----~i~~D~Vv~a~G~~p 265 (450)
T PRK06116 237 NADGSLTLTLE---DGE----TLTVDCLIWAIGREP 265 (450)
T ss_pred cCCceEEEEEc---CCc----EEEeCEEEEeeCCCc
Confidence 6555 555543 453 689999999999754
No 249
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.59 E-value=0.00068 Score=72.84 Aligned_cols=36 Identities=33% Similarity=0.514 Sum_probs=32.5
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 347999999999999999999999999999997653
No 250
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.59 E-value=6.3e-05 Score=81.43 Aligned_cols=33 Identities=21% Similarity=0.497 Sum_probs=31.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
+||+||||||+|+++|+.|+++|.+|+||||.+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 699999999999999999999999999999864
No 251
>PRK12831 putative oxidoreductase; Provisional
Probab=97.57 E-value=8.2e-05 Score=80.36 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=33.6
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
...||+||||||+||++|..|+++|++|+|+|+.+.+
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~ 175 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP 175 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 4469999999999999999999999999999987653
No 252
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.56 E-value=0.001 Score=72.24 Aligned_cols=36 Identities=28% Similarity=0.570 Sum_probs=32.6
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i 215 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI 215 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence 358999999999999999999999999999987653
No 253
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.55 E-value=7.6e-05 Score=79.63 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=35.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
+.++||+|||+|.+|+++|.+|++.|.+|+++||+...
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~y 39 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYY 39 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCc
Confidence 45799999999999999999999999999999999765
No 254
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00016 Score=71.74 Aligned_cols=32 Identities=31% Similarity=0.633 Sum_probs=28.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEE
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVL 72 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~vi 72 (572)
...+||+||||||+|.++|++-+|.|++.=|+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ 240 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLV 240 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhh
Confidence 44699999999999999999999999986554
No 255
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.52 E-value=0.00049 Score=72.01 Aligned_cols=34 Identities=9% Similarity=0.295 Sum_probs=29.5
Q ss_pred CEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAF 78 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~---Gi~v~viEr~~~~ 78 (572)
+|+|||||++|+.+|..|+++ +.+|+|||+.+..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 489999999999999999754 6899999987664
No 256
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.51 E-value=0.00099 Score=71.77 Aligned_cols=98 Identities=19% Similarity=0.371 Sum_probs=72.1
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~ 122 (572)
.-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+. +++.
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------~~~d-------------------- 206 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-------------------RGFD-------------------- 206 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-------------------cccC--------------------
Confidence 3479999999999999999999999999999865431 0100
Q ss_pred CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (572)
Q Consensus 123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~ 202 (572)
..+...+.+.+.+.|+ +++.++++.+++.
T Consensus 207 --------------------------------~~~~~~l~~~l~~~gV-------------------~i~~~~~v~~i~~ 235 (446)
T TIGR01424 207 --------------------------------DDMRALLARNMEGRGI-------------------RIHPQTSLTSITK 235 (446)
T ss_pred --------------------------------HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEEEE
Confidence 0122234555666676 8899999999987
Q ss_pred eCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258 203 TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (572)
Q Consensus 203 ~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S 237 (572)
+++++.+++. +++ ++.+|.||-|-|...
T Consensus 236 ~~~~~~v~~~---~g~----~i~~D~viva~G~~p 263 (446)
T TIGR01424 236 TDDGLKVTLS---HGE----EIVADVVLFATGRSP 263 (446)
T ss_pred cCCeEEEEEc---CCc----EeecCEEEEeeCCCc
Confidence 7777666554 443 689999999999643
No 257
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.50 E-value=0.00077 Score=70.93 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=30.7
Q ss_pred CCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~ 78 (572)
.+|+|||||+||+.+|..|++. ..+++||++.+..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~ 39 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD 39 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC
Confidence 4899999999999999999886 5689999988754
No 258
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.49 E-value=0.00012 Score=72.28 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=33.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
+|.+|||||.+|+.+|..|+++|.+|+||||++.+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HI 36 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHI 36 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccC
Confidence 69999999999999999999999999999999876
No 259
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.48 E-value=0.0012 Score=71.39 Aligned_cols=98 Identities=17% Similarity=0.295 Sum_probs=73.2
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
-+|+|||||+.|+-+|..|++.|.+|+++|+.+.+.+ ...
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-------------------~~d--------------------- 217 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-------------------GED--------------------- 217 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-------------------CCC---------------------
Confidence 4799999999999999999999999999998654310 000
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
..+...+.+.+++.|+ +++.++++++++.+
T Consensus 218 -------------------------------~~~~~~l~~~L~~~gV-------------------~i~~~~~v~~v~~~ 247 (466)
T PRK07845 218 -------------------------------ADAAEVLEEVFARRGM-------------------TVLKRSRAESVERT 247 (466)
T ss_pred -------------------------------HHHHHHHHHHHHHCCc-------------------EEEcCCEEEEEEEe
Confidence 0122345566667776 88899999999877
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (572)
Q Consensus 204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~ 238 (572)
++++.+++. +|+ ++.+|.||-|-|....
T Consensus 248 ~~~~~v~~~---~g~----~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 248 GDGVVVTLT---DGR----TVEGSHALMAVGSVPN 275 (466)
T ss_pred CCEEEEEEC---CCc----EEEecEEEEeecCCcC
Confidence 777766553 453 6899999999997654
No 260
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.48 E-value=0.00014 Score=82.81 Aligned_cols=35 Identities=29% Similarity=0.516 Sum_probs=32.0
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
...+|+|||||||||++|..|++.|++|+|+|+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 34689999999999999999999999999999863
No 261
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.48 E-value=0.0017 Score=70.56 Aligned_cols=98 Identities=14% Similarity=0.202 Sum_probs=70.0
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
-+|+|||||+.|+-+|..|++.|.+|+|+++. .+. +++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l-------------------~~~d--------------------- 219 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL-------------------RGFD--------------------- 219 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc-------------------cccC---------------------
Confidence 47999999999999999999999999999863 210 0110
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
..+...+.+.+++.|+ ++++++++++++..
T Consensus 220 -------------------------------~~~~~~l~~~L~~~gV-------------------~i~~~~~v~~v~~~ 249 (484)
T TIGR01438 220 -------------------------------QDCANKVGEHMEEHGV-------------------KFKRQFVPIKVEQI 249 (484)
T ss_pred -------------------------------HHHHHHHHHHHHHcCC-------------------EEEeCceEEEEEEc
Confidence 1122344566666776 88899998888876
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeecCCC
Q 008258 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAG 236 (572)
Q Consensus 204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~ 236 (572)
++.+.+++. +++ ...++.+|.||-|-|..
T Consensus 250 ~~~~~v~~~---~~~-~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 250 EAKVKVTFT---DST-NGIEEEYDTVLLAIGRD 278 (484)
T ss_pred CCeEEEEEe---cCC-cceEEEeCEEEEEecCC
Confidence 666666664 332 12368999999999964
No 262
>PLN02507 glutathione reductase
Probab=97.48 E-value=0.001 Score=72.56 Aligned_cols=98 Identities=12% Similarity=0.293 Sum_probs=72.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
-+|+|||||+.|+-+|..|++.|.+|+|+++.+.+. +++.
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-------------------~~~d--------------------- 243 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-------------------RGFD--------------------- 243 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------cccC---------------------
Confidence 479999999999999999999999999999865431 0000
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
..+...+.+.+++.|+ +++.++++.+++.+
T Consensus 244 -------------------------------~~~~~~l~~~l~~~GI-------------------~i~~~~~V~~i~~~ 273 (499)
T PLN02507 244 -------------------------------DEMRAVVARNLEGRGI-------------------NLHPRTNLTQLTKT 273 (499)
T ss_pred -------------------------------HHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEEe
Confidence 1122334555666676 88999999999877
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (572)
Q Consensus 204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~ 238 (572)
++++.+.+. +|. ++.+|.||-|-|....
T Consensus 274 ~~~~~v~~~---~g~----~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 274 EGGIKVITD---HGE----EFVADVVLFATGRAPN 301 (499)
T ss_pred CCeEEEEEC---CCc----EEEcCEEEEeecCCCC
Confidence 677665543 443 5899999999997654
No 263
>PRK07846 mycothione reductase; Reviewed
Probab=97.47 E-value=0.0011 Score=71.60 Aligned_cols=35 Identities=20% Similarity=0.475 Sum_probs=32.1
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ 200 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR 200 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 35899999999999999999999999999998754
No 264
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.46 E-value=0.00015 Score=78.12 Aligned_cols=38 Identities=32% Similarity=0.427 Sum_probs=34.2
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
....+|+||||||+||++|..|++.|++|+|||+.+.+
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 34579999999999999999999999999999997654
No 265
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.44 E-value=0.0013 Score=70.97 Aligned_cols=99 Identities=20% Similarity=0.223 Sum_probs=71.7
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeee
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCT 122 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~ 122 (572)
.-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+. +++.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-------------------~~~d-------------------- 206 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-------------------RSFD-------------------- 206 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------cccC--------------------
Confidence 3589999999999999999999999999999875531 0100
Q ss_pred CCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEee
Q 008258 123 SVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSA 202 (572)
Q Consensus 123 ~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~ 202 (572)
..+...+.+.+++.|+ +++.++++++++.
T Consensus 207 --------------------------------~~~~~~~~~~l~~~gI-------------------~i~~~~~v~~i~~ 235 (450)
T TIGR01421 207 --------------------------------SMISETITEEYEKEGI-------------------NVHKLSKPVKVEK 235 (450)
T ss_pred --------------------------------HHHHHHHHHHHHHcCC-------------------EEEcCCEEEEEEE
Confidence 1122345566666776 8899999999987
Q ss_pred eCCe-EEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258 203 TDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (572)
Q Consensus 203 ~~~~-v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S 237 (572)
++++ +.+++. +|. .++.+|.||-|-|...
T Consensus 236 ~~~~~~~v~~~---~g~---~~i~~D~vi~a~G~~p 265 (450)
T TIGR01421 236 TVEGKLVIHFE---DGK---SIDDVDELIWAIGRKP 265 (450)
T ss_pred eCCceEEEEEC---CCc---EEEEcCEEEEeeCCCc
Confidence 6544 555543 442 2689999999998654
No 266
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.44 E-value=0.00011 Score=74.60 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=31.0
Q ss_pred CCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFS 79 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~~~ 79 (572)
|||||||+|++|+++|..|++.| .+|+|+|+.+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 69999999999999999999997 7999999987643
No 267
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.43 E-value=0.0017 Score=69.85 Aligned_cols=98 Identities=15% Similarity=0.299 Sum_probs=72.0
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+ ..
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------~~---------------------- 197 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP-------------------RE---------------------- 197 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC-------------------Cc----------------------
Confidence 4899999999999999999999999999998654310 00
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
+ ..+.+.|.+.+++.|+ ++++++++++++.+
T Consensus 198 -----------------------------~-~~~~~~l~~~l~~~gV-------------------~v~~~~~v~~i~~~ 228 (441)
T PRK08010 198 -----------------------------D-RDIADNIATILRDQGV-------------------DIILNAHVERISHH 228 (441)
T ss_pred -----------------------------C-HHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEEc
Confidence 0 1122345566777776 88999999999877
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (572)
Q Consensus 204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V 239 (572)
++.++++.. ++ ++.+|.||-|-|.....
T Consensus 229 ~~~v~v~~~---~g-----~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 229 ENQVQVHSE---HA-----QLAVDALLIASGRQPAT 256 (441)
T ss_pred CCEEEEEEc---CC-----eEEeCEEEEeecCCcCC
Confidence 666555432 33 47899999999977643
No 268
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.42 E-value=0.00021 Score=76.01 Aligned_cols=37 Identities=30% Similarity=0.308 Sum_probs=32.3
Q ss_pred cCCEEEECCCHHHHHHHHHH-HhCCCCEEEEcCCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILL-TKLGIKCSVLEKNKAFS 79 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~L-a~~Gi~v~viEr~~~~~ 79 (572)
...|+||||||||+.+|..| ++.|++|.|+||.+.+-
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 35799999999999999965 56799999999998773
No 269
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.42 E-value=0.00016 Score=83.44 Aligned_cols=36 Identities=31% Similarity=0.574 Sum_probs=33.3
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
..+|+||||||||+++|..|++.|++|+|+|+.+.+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA 574 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 458999999999999999999999999999998764
No 270
>PRK02106 choline dehydrogenase; Validated
Probab=97.41 E-value=0.00016 Score=80.21 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=35.2
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCC
Q 008258 39 SNEAVVPVLIVGAGPVGLVLSILLTK-LGIKCSVLEKNKA 77 (572)
Q Consensus 39 ~~~~~~dVlIVGaGpaGL~~A~~La~-~Gi~v~viEr~~~ 77 (572)
|+..++||+|||||++|+.+|..|++ .|++|+|||+.+.
T Consensus 1 ~~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 34566999999999999999999999 7999999999864
No 271
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.40 E-value=0.00018 Score=76.20 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=32.3
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
++||+|||||++|+++|+.|+++|.+|+|||+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4899999999999999999999999999999874
No 272
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.39 E-value=0.0013 Score=68.25 Aligned_cols=40 Identities=33% Similarity=0.395 Sum_probs=33.3
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhC-----CCCEEEEcCCCCC
Q 008258 39 SNEAVVPVLIVGAGPVGLVLSILLTKL-----GIKCSVLEKNKAF 78 (572)
Q Consensus 39 ~~~~~~dVlIVGaGpaGL~~A~~La~~-----Gi~v~viEr~~~~ 78 (572)
.+...+||+||||||+|+.+|+.|+.. ...+.++|+....
T Consensus 14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~ 58 (486)
T COG2509 14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDI 58 (486)
T ss_pred HhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccch
Confidence 346679999999999999999999853 5789999987543
No 273
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.39 E-value=0.00018 Score=81.25 Aligned_cols=36 Identities=31% Similarity=0.564 Sum_probs=33.3
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
..+|+||||||+||++|..|++.|++|+|+|+.+.+
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~ 362 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI 362 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 468999999999999999999999999999998654
No 274
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.39 E-value=0.00021 Score=73.09 Aligned_cols=65 Identities=25% Similarity=0.383 Sum_probs=47.0
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCE--EEEcCCCCCC-----CCCCeee--------------eChhHHHHHHhhcc
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKC--SVLEKNKAFS-----THPQAHF--------------INNRYALVFRKLDG 100 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v--~viEr~~~~~-----~~~~a~~--------------l~~rt~e~l~~l~G 100 (572)
...+|+|||||++||++|++|++++-++ +|+|+.+... ..+...+ ...++++.+.++ |
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL-G 88 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL-G 88 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHc-C
Confidence 3468999999999999999999998765 5599887541 1111111 123678888999 9
Q ss_pred hHHHHHh
Q 008258 101 LAEEIER 107 (572)
Q Consensus 101 l~~~l~~ 107 (572)
+.+++..
T Consensus 89 l~~e~~~ 95 (491)
T KOG1276|consen 89 LEDELQP 95 (491)
T ss_pred ccceeee
Confidence 9877654
No 275
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.39 E-value=0.0022 Score=69.46 Aligned_cols=36 Identities=31% Similarity=0.633 Sum_probs=32.5
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 358999999999999999999999999999987643
No 276
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.37 E-value=0.00021 Score=77.49 Aligned_cols=37 Identities=32% Similarity=0.527 Sum_probs=33.9
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
...+|+||||||+|+++|..|++.|++|+|||+.+.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 3468999999999999999999999999999998765
No 277
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.37 E-value=0.0002 Score=84.19 Aligned_cols=36 Identities=33% Similarity=0.512 Sum_probs=33.3
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
..+|+|||||||||++|..|++.|++|+|||+.+.+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV 465 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 468999999999999999999999999999988654
No 278
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.36 E-value=0.0018 Score=63.05 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=31.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCC------CCEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLG------IKCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~G------i~v~viEr~~~ 77 (572)
..|+|||||+.|.++|++|++++ ++++|+|++.-
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~I 50 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEI 50 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccc
Confidence 68999999999999999999998 89999998754
No 279
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.32 E-value=0.00026 Score=74.26 Aligned_cols=49 Identities=24% Similarity=0.496 Sum_probs=40.7
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhh
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKL 98 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l 98 (572)
+||+|||||++|+++|+.|++.|.+|+|+|+... +..++..++++|..+
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~------~~~~s~gs~d~L~~~ 49 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS------ALHFSSGSLDLLSRL 49 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc------hhhhhhHHHhHhhhc
Confidence 5899999999999999999999999999998642 444566677777655
No 280
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.32 E-value=0.00028 Score=76.31 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=33.8
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
...+|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 3468999999999999999999999999999998754
No 281
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.31 E-value=0.00036 Score=68.98 Aligned_cols=44 Identities=30% Similarity=0.403 Sum_probs=38.7
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCe
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQA 84 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a 84 (572)
+...||+|||||.+||.+|..|+.+|.+|+|+|+..+..-.+++
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 45689999999999999999999999999999998776655554
No 282
>PLN02546 glutathione reductase
Probab=97.31 E-value=0.00031 Score=77.31 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=32.0
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr 74 (572)
..++||+||||||+|..+|+.++++|.+|.|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 4468999999999999999999999999999996
No 283
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.30 E-value=0.0015 Score=75.23 Aligned_cols=107 Identities=19% Similarity=0.412 Sum_probs=74.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+-. +.+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~---------------~~l------------------------- 180 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA---------------KQL------------------------- 180 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh---------------hhc-------------------------
Confidence 4799999999999999999999999999997653210 001
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
+ ..+...+.+.+++.|+ ++++++.++++..+
T Consensus 181 -----------------------------d-~~~~~~l~~~l~~~GV-------------------~v~~~~~v~~i~~~ 211 (785)
T TIGR02374 181 -----------------------------D-QTAGRLLQRELEQKGL-------------------TFLLEKDTVEIVGA 211 (785)
T ss_pred -----------------------------C-HHHHHHHHHHHHHcCC-------------------EEEeCCceEEEEcC
Confidence 0 0122345566667776 88889988888765
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeecCCChh--hhhhcCCc
Q 008258 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGST--VRKLVGID 246 (572)
Q Consensus 204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~--VR~~lg~~ 246 (572)
+....+++. +|+ ++.+|+||-|-|.+.. +-+..|+.
T Consensus 212 ~~~~~v~~~---dG~----~i~~D~Vi~a~G~~Pn~~la~~~gl~ 249 (785)
T TIGR02374 212 TKADRIRFK---DGS----SLEADLIVMAAGIRPNDELAVSAGIK 249 (785)
T ss_pred CceEEEEEC---CCC----EEEcCEEEECCCCCcCcHHHHhcCCc
Confidence 544445554 554 6899999999997643 33444443
No 284
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.28 E-value=0.0027 Score=68.05 Aligned_cols=34 Identities=21% Similarity=0.486 Sum_probs=31.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
-+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 171 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER 171 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 4799999999999999999999999999998754
No 285
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.28 E-value=0.00026 Score=81.23 Aligned_cols=37 Identities=30% Similarity=0.446 Sum_probs=33.4
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
...+|+|||||||||++|..|++.|++|+|||+.+.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~ 466 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEI 466 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3468999999999999999999999999999997543
No 286
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.26 E-value=0.0032 Score=67.92 Aligned_cols=35 Identities=17% Similarity=0.457 Sum_probs=31.8
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 203 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK 203 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 35899999999999999999999999999998654
No 287
>PLN02529 lysine-specific histone demethylase 1
Probab=97.26 E-value=0.00034 Score=78.73 Aligned_cols=36 Identities=39% Similarity=0.505 Sum_probs=33.4
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
...+|+||||||+||++|..|+++|++|+|+|++..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~ 194 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR 194 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 457999999999999999999999999999999864
No 288
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.25 E-value=0.0026 Score=67.29 Aligned_cols=98 Identities=28% Similarity=0.468 Sum_probs=72.7
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
.+|+|||+|+.|+.+|..|+++|++|+++|+.+.+... +.
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~-------------------~~--------------------- 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ-------------------LL--------------------- 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh-------------------hh---------------------
Confidence 68999999999999999999999999999998765210 00
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
. ..+-..+.+.+++.|+ +++++.+++.++..
T Consensus 177 ---------------------------~---~~~~~~~~~~l~~~gi-------------------~~~~~~~~~~i~~~ 207 (415)
T COG0446 177 ---------------------------D---PEVAEELAELLEKYGV-------------------ELLLGTKVVGVEGK 207 (415)
T ss_pred ---------------------------h---HHHHHHHHHHHHHCCc-------------------EEEeCCceEEEEcc
Confidence 0 1233445666667776 88899999999887
Q ss_pred CCeEEE---EEEeccCCceeeEEEEecEEEeecCCCh
Q 008258 204 DQCINV---IASFLKEGKCTERNIQCNILIGTDGAGS 237 (572)
Q Consensus 204 ~~~v~v---~~~~~~~g~~~~~~i~ad~vVgADG~~S 237 (572)
.+.... ... ++. .+.+|+++.+-|.+-
T Consensus 208 ~~~~~~~~~~~~---~~~----~~~~d~~~~~~g~~p 237 (415)
T COG0446 208 GNTLVVERVVGI---DGE----EIKADLVIIGPGERP 237 (415)
T ss_pred cCcceeeEEEEe---CCc----EEEeeEEEEeecccc
Confidence 765442 222 332 689999999998765
No 289
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.23 E-value=0.0012 Score=67.61 Aligned_cols=158 Identities=18% Similarity=0.257 Sum_probs=91.3
Q ss_pred CCCccCCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccc
Q 008258 39 SNEAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRK 117 (572)
Q Consensus 39 ~~~~~~dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~ 117 (572)
|++..+|++.||-||.-|.+|++|..++ .+++.+||.+.+..+|... +...+|++ + ..+.+.....|...+..
T Consensus 1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGml-legstlQv----~-FlkDLVTl~~PTs~ySF 74 (436)
T COG3486 1 MMAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGML-LEGSTLQV----P-FLKDLVTLVDPTSPYSF 74 (436)
T ss_pred CCCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcc-cCCccccc----c-chhhhccccCCCCchHH
Confidence 3467789999999999999999999885 7899999999999887542 22223322 1 11222222233221111
Q ss_pred eeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEE
Q 008258 118 FIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHEC 197 (572)
Q Consensus 118 ~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v 197 (572)
.-|. ...|+... .--....+++|.+..+.+.=.+.... .++||.+|
T Consensus 75 LNYL-~~h~RLy~-------------Fl~~e~f~i~R~Ey~dY~~Waa~~l~--------------------~~rfg~~V 120 (436)
T COG3486 75 LNYL-HEHGRLYE-------------FLNYETFHIPRREYNDYCQWAASQLP--------------------SLRFGEEV 120 (436)
T ss_pred HHHH-HHcchHhh-------------hhhhhcccccHHHHHHHHHHHHhhCC--------------------ccccCCee
Confidence 1010 11222110 11222456788888887765555542 68899999
Q ss_pred EEEee-eCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhhh
Q 008258 198 VSVSA-TDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTVR 240 (572)
Q Consensus 198 ~~v~~-~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~VR 240 (572)
+.|.. +.+.+...+....+++ ..+|+=||-.-|..=.+-
T Consensus 121 ~~i~~~~~d~~~~~~~~t~~~~----~y~ar~lVlg~G~~P~IP 160 (436)
T COG3486 121 TDISSLDGDAVVRLFVVTANGT----VYRARNLVLGVGTQPYIP 160 (436)
T ss_pred ccccccCCcceeEEEEEcCCCc----EEEeeeEEEccCCCcCCC
Confidence 97733 2233222222112332 678888888888654443
No 290
>PRK14694 putative mercuric reductase; Provisional
Probab=97.22 E-value=0.0032 Score=68.24 Aligned_cols=32 Identities=31% Similarity=0.564 Sum_probs=29.8
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
-+|+|||||++|+-+|..|++.|.+|+|+++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 47999999999999999999999999999863
No 291
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.21 E-value=0.00043 Score=74.92 Aligned_cols=37 Identities=27% Similarity=0.581 Sum_probs=33.8
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
...+|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 3468999999999999999999999999999998754
No 292
>PRK14727 putative mercuric reductase; Provisional
Probab=97.21 E-value=0.0038 Score=67.88 Aligned_cols=97 Identities=16% Similarity=0.266 Sum_probs=70.1
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
-+|+|||||+.|+-+|..|++.|.+|+|+++. ..- +...
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l-------------------~~~d--------------------- 227 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLL-------------------FRED--------------------- 227 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCC-------------------Ccch---------------------
Confidence 47999999999999999999999999999864 210 0000
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
..+...+.+.+++.|+ ++++++++++++.+
T Consensus 228 -------------------------------~~~~~~l~~~L~~~GV-------------------~i~~~~~V~~i~~~ 257 (479)
T PRK14727 228 -------------------------------PLLGETLTACFEKEGI-------------------EVLNNTQASLVEHD 257 (479)
T ss_pred -------------------------------HHHHHHHHHHHHhCCC-------------------EEEcCcEEEEEEEe
Confidence 0122335556667776 88899999999877
Q ss_pred CCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258 204 DQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (572)
Q Consensus 204 ~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V 239 (572)
++++.+... ++ ++.+|.||-|-|.....
T Consensus 258 ~~~~~v~~~---~g-----~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 258 DNGFVLTTG---HG-----ELRAEKLLISTGRHANT 285 (479)
T ss_pred CCEEEEEEc---CC-----eEEeCEEEEccCCCCCc
Confidence 666655432 33 47899999999987644
No 293
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.21 E-value=0.0032 Score=67.73 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=30.9
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
-+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 183 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR 183 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 4799999999999999999999999999987643
No 294
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.17 E-value=0.00043 Score=77.99 Aligned_cols=36 Identities=31% Similarity=0.523 Sum_probs=33.4
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
..+|+||||||+||++|..|++.|++|+|+|+.+.+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 458999999999999999999999999999998764
No 295
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.17 E-value=0.00042 Score=73.88 Aligned_cols=36 Identities=36% Similarity=0.657 Sum_probs=33.9
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
+.++||+||||||+|.++|+.+++.|.+|.++|+..
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 457999999999999999999999999999999986
No 296
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.16 E-value=0.0034 Score=67.43 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=31.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 4799999999999999999999999999998754
No 297
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.16 E-value=0.0029 Score=73.05 Aligned_cols=107 Identities=15% Similarity=0.263 Sum_probs=74.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceeeeeC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIYCTS 123 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~~~~ 123 (572)
-.|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-. +.+
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~---------------~~l------------------------- 185 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA---------------EQL------------------------- 185 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh---------------hhc-------------------------
Confidence 4799999999999999999999999999998654210 001
Q ss_pred CCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeee
Q 008258 124 VTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSAT 203 (572)
Q Consensus 124 ~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~ 203 (572)
+ ......|.+.+++.|+ +++.+++++++..+
T Consensus 186 -----------------------------d-~~~~~~l~~~L~~~GV-------------------~v~~~~~v~~I~~~ 216 (847)
T PRK14989 186 -----------------------------D-QMGGEQLRRKIESMGV-------------------RVHTSKNTLEIVQE 216 (847)
T ss_pred -----------------------------C-HHHHHHHHHHHHHCCC-------------------EEEcCCeEEEEEec
Confidence 0 1122345666777787 89999999999764
Q ss_pred CC--eEEEEEEeccCCceeeEEEEecEEEeecCCChhh--hhhcCCc
Q 008258 204 DQ--CINVIASFLKEGKCTERNIQCNILIGTDGAGSTV--RKLVGID 246 (572)
Q Consensus 204 ~~--~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V--R~~lg~~ 246 (572)
++ ...+++. +|+ ++.+|+||-|-|.+... .+..|+.
T Consensus 217 ~~~~~~~v~~~---dG~----~i~~D~Vv~A~G~rPn~~L~~~~Gl~ 256 (847)
T PRK14989 217 GVEARKTMRFA---DGS----ELEVDFIVFSTGIRPQDKLATQCGLA 256 (847)
T ss_pred CCCceEEEEEC---CCC----EEEcCEEEECCCcccCchHHhhcCcc
Confidence 32 2333333 554 68999999999976543 3344543
No 298
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.16 E-value=0.0037 Score=67.89 Aligned_cols=98 Identities=21% Similarity=0.291 Sum_probs=69.6
Q ss_pred CCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCCCCCCCeeeeChhHHHHHHhhcchHHHHHhcCCCcccccceee
Q 008258 44 VPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAFSTHPQAHFINNRYALVFRKLDGLAEEIERSQPPVDLWRKFIY 120 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~---Gi~v~viEr~~~~~~~~~a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~~~~~~~ 120 (572)
-+|+|||||+.|+-+|..|+.. |.+|+|+|+.+.+. +.+
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-------------------~~~------------------- 229 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-------------------RGF------------------- 229 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-------------------ccc-------------------
Confidence 4799999999999999777654 99999999876531 000
Q ss_pred eeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEE
Q 008258 121 CTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSV 200 (572)
Q Consensus 121 ~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v 200 (572)
+ ..+.+.+.+.+++.|+ +++++++++++
T Consensus 230 --------------------------------d-~~~~~~l~~~L~~~GI-------------------~i~~~~~v~~i 257 (486)
T TIGR01423 230 --------------------------------D-STLRKELTKQLRANGI-------------------NIMTNENPAKV 257 (486)
T ss_pred --------------------------------C-HHHHHHHHHHHHHcCC-------------------EEEcCCEEEEE
Confidence 0 1223445566677776 88999999999
Q ss_pred eeeCCe-EEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258 201 SATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (572)
Q Consensus 201 ~~~~~~-v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~ 238 (572)
+.++++ +.+++. +++ ++.+|.||-|-|....
T Consensus 258 ~~~~~~~~~v~~~---~g~----~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 258 TLNADGSKHVTFE---SGK----TLDVDVVMMAIGRVPR 289 (486)
T ss_pred EEcCCceEEEEEc---CCC----EEEcCEEEEeeCCCcC
Confidence 865444 445443 443 6899999999997654
No 299
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.15 E-value=0.0019 Score=74.54 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=31.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAFS 79 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~----Gi~v~viEr~~~~~ 79 (572)
.+|+|||||++|+.+|..|.+. +++|+||++.+.+.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 4899999999999999999764 58999999987753
No 300
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.15 E-value=0.0039 Score=68.06 Aligned_cols=31 Identities=35% Similarity=0.487 Sum_probs=29.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr 74 (572)
-+|+|||||+.|+-+|..|++.|.+|+|+++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 213 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVR 213 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 3799999999999999999999999999986
No 301
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.13 E-value=0.0032 Score=66.07 Aligned_cols=35 Identities=29% Similarity=0.386 Sum_probs=30.2
Q ss_pred CCEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAF 78 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~---Gi~v~viEr~~~~ 78 (572)
++|+|||+|++|+.+|..|.+. .-.+.|+|+++..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 5899999999999999999886 1239999999876
No 302
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.11 E-value=0.00065 Score=70.78 Aligned_cols=37 Identities=35% Similarity=0.436 Sum_probs=33.9
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
...+|+|||||++|+.+|..|++.|.+|+|||+.+.+
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~ 53 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP 53 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 3468999999999999999999999999999998765
No 303
>PTZ00058 glutathione reductase; Provisional
Probab=97.09 E-value=0.0045 Score=68.24 Aligned_cols=35 Identities=17% Similarity=0.371 Sum_probs=32.0
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 45799999999999999999999999999998754
No 304
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.09 E-value=0.00047 Score=74.85 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=31.6
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKN 75 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~-Gi~v~viEr~ 75 (572)
.++||+||||||+|.++|+.+++. |.+|.||||.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 358999999999999999999996 9999999984
No 305
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.09 E-value=0.00067 Score=75.90 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=31.7
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
++||+||||||+|.++|+.++++|.+|.|||+.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 689999999999999999999999999999975
No 306
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.08 E-value=0.0018 Score=74.49 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=29.2
Q ss_pred EEEECCCHHHHHHHHHHHhC---CCCEEEEcCCCCC
Q 008258 46 VLIVGAGPVGLVLSILLTKL---GIKCSVLEKNKAF 78 (572)
Q Consensus 46 VlIVGaGpaGL~~A~~La~~---Gi~v~viEr~~~~ 78 (572)
|+|||||+||+.+|..|.+. +++|+|||+.+.+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 68999999999999998775 5799999988765
No 307
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.08 E-value=0.0019 Score=68.40 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=32.5
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
..+||+|||||-||+-+|++.+|.|.+++++--+..
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~d 38 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLD 38 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCC
Confidence 349999999999999999999999999999877654
No 308
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.08 E-value=3.2e-05 Score=78.56 Aligned_cols=80 Identities=36% Similarity=0.431 Sum_probs=64.4
Q ss_pred ccccceecccccccCCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCCCchhhHhhHHHhhhHHHHHhHHH
Q 008258 344 WVMHAEVAEKFLCCYNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDIAPASILNTYETERKPIAEFNTAL 423 (572)
Q Consensus 344 w~~~~~~a~~~~~~~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~a~~~~~~ 423 (572)
|..+..++.-.-. .-+.+-|+|+|++.|.++.+++...++..+|+|+.+.. ....|.+|..|| ++..-+...
T Consensus 232 y~~havVAtl~l~--~~~~~~~~AwQRFlP~GpiAllpl~d~~s~LvWSts~~-----~a~~L~~lp~e~-fv~~lNsaf 303 (481)
T KOG3855|consen 232 YDQHAVVATLKLE--EEAILNGVAWQRFLPTGPIALLPLSDTLSSLVWSTSPE-----NASILKSLPEER-FVDLLNSAF 303 (481)
T ss_pred ccceeeeEEEEec--ccccccchhHHhcCCCCceeecccccccccceeecCHH-----HHHHHhcCCchh-HHHHHHHHH
Confidence 5566777776652 23888999999999999999999999999999998743 357899999999 888777777
Q ss_pred HHHHHHHh
Q 008258 424 SVQNFRAA 431 (572)
Q Consensus 424 s~~~~~~~ 431 (572)
+.++.+..
T Consensus 304 ~~q~~~~~ 311 (481)
T KOG3855|consen 304 SSQNPRAA 311 (481)
T ss_pred hccCCCch
Confidence 66665443
No 309
>PRK07846 mycothione reductase; Reviewed
Probab=97.07 E-value=0.0044 Score=66.85 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=27.3
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
++||+||||||+|.++|.. +.|.+|.||||.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~ 31 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG 31 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC
Confidence 3899999999999988865 469999999985
No 310
>PRK13748 putative mercuric reductase; Provisional
Probab=97.06 E-value=0.0053 Score=68.25 Aligned_cols=32 Identities=25% Similarity=0.499 Sum_probs=30.0
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
-+|+|||||+.|+-+|..|++.|.+|+|+++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 47999999999999999999999999999974
No 311
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.06 E-value=0.0056 Score=61.80 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=30.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
-+|+|||+|++|+-+|..|++.+.+|+++++.+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 489999999999999999999999999998854
No 312
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.05 E-value=0.00069 Score=76.28 Aligned_cols=36 Identities=28% Similarity=0.596 Sum_probs=33.4
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
..+|+||||||+||++|..|++.|++|+|+|+.+.+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 468999999999999999999999999999998764
No 313
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.04 E-value=0.0062 Score=66.86 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=30.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 489999999999999999999999999998654
No 314
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.03 E-value=0.0035 Score=61.97 Aligned_cols=34 Identities=32% Similarity=0.459 Sum_probs=30.8
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
+|+|||+|.|||+++.-+-..|-.|+++|+...+
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~ 44 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSI 44 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCc
Confidence 7999999999999999998876669999999776
No 315
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.02 E-value=0.00063 Score=75.54 Aligned_cols=36 Identities=25% Similarity=0.513 Sum_probs=33.2
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.-+|+||||||+||++|..|++.|.+|+|+|+.+.+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 358999999999999999999999999999998765
No 316
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.01 E-value=0.0033 Score=67.87 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=27.0
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
++||+||||||+|..+|. +++|.+|.||||.
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~ 32 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKG 32 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCC
Confidence 589999999999988864 4579999999985
No 317
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.00 E-value=0.008 Score=62.17 Aligned_cols=145 Identities=17% Similarity=0.177 Sum_probs=78.9
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCCCCCCC----eeeeChhHHHHHHhhcchHHHHHhcCCCccc
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAFSTHPQ----AHFINNRYALVFRKLDGLAEEIERSQPPVDL 114 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~~~~~~~----a~~l~~rt~e~l~~l~Gl~~~l~~~~~~~~~ 114 (572)
.....|+|||||.++.-++..|.+.+- +|.++=|.+...+..- ...++|.-++.+..++ ++.+......
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~---~~~R~~~l~~-- 262 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLP---DEERRELLRE-- 262 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS----HHHHHHHHHH--
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCC---HHHHHHHHHH--
Confidence 345689999999999999999999875 7999999887643221 2356777777776552 2221110000
Q ss_pred ccceeeeeCCCCCeeeeecCCCccccccccCCccccccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEec
Q 008258 115 WRKFIYCTSVTGPILGSVDHMQPQDFEKVVSPVSVAHFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMG 194 (572)
Q Consensus 115 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~sp~~~~~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g 194 (572)
.+ ...+..++.. +.+.|.+.+-+.-+. ......++.+
T Consensus 263 ~~-----------------------------~~ny~~i~~~-~l~~iy~~lY~~~v~-------------g~~~~~l~~~ 299 (341)
T PF13434_consen 263 QR-----------------------------HTNYGGIDPD-LLEAIYDRLYEQRVS-------------GRGRLRLLPN 299 (341)
T ss_dssp TG-----------------------------GGTSSEB-HH-HHHHHHHHHHHHHHH-------------T---SEEETT
T ss_pred hH-----------------------------hhcCCCCCHH-HHHHHHHHHHHHHhc-------------CCCCeEEeCC
Confidence 00 0001112222 222233322111000 0012488899
Q ss_pred cEEEEEeeeCC-eEEEEEEeccCCceeeEEEEecEEEeecCC
Q 008258 195 HECVSVSATDQ-CINVIASFLKEGKCTERNIQCNILIGTDGA 235 (572)
Q Consensus 195 ~~v~~v~~~~~-~v~v~~~~~~~g~~~~~~i~ad~vVgADG~ 235 (572)
++|++++.+++ ++.+++.+...+ +++++++|+||.|.|-
T Consensus 300 ~~v~~~~~~~~~~~~l~~~~~~~~--~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 300 TEVTSAEQDGDGGVRLTLRHRQTG--EEETLEVDAVILATGY 339 (341)
T ss_dssp EEEEEEEEES-SSEEEEEEETTT----EEEEEESEEEE---E
T ss_pred CEEEEEEECCCCEEEEEEEECCCC--CeEEEecCEEEEcCCc
Confidence 99999999884 899999854444 5678999999999994
No 318
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.0029 Score=62.78 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=32.8
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
...|-|||||.||.-+|+.++++|++|.++|.++..
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 357999999999999999999999999999988753
No 319
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.97 E-value=0.001 Score=71.09 Aligned_cols=35 Identities=31% Similarity=0.468 Sum_probs=33.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
-+|+||||||+||++|..|++.|++|+|+|+.+.+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~ 158 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD 158 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence 68999999999999999999999999999998875
No 320
>PLN02785 Protein HOTHEAD
Probab=96.96 E-value=0.0013 Score=72.86 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=33.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
+..+|++|||||.+|+.+|..|++ +.+|+|||+.+.+
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~~ 89 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGVP 89 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCCC
Confidence 456999999999999999999999 6999999998753
No 321
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.95 E-value=0.0068 Score=66.61 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=30.9
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
-+|+|||||++|+-+|..|+..|.+|+|+++.+.
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~ 385 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE 385 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence 4799999999999999999999999999987654
No 322
>PRK10262 thioredoxin reductase; Provisional
Probab=96.94 E-value=0.0093 Score=61.20 Aligned_cols=34 Identities=12% Similarity=0.378 Sum_probs=31.2
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
-+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~ 180 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG 180 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence 4799999999999999999999999999998753
No 323
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.93 E-value=0.001 Score=72.35 Aligned_cols=36 Identities=31% Similarity=0.501 Sum_probs=33.1
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
..+|+||||||+|+++|..|++.|++|+|+|+.+.+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 358999999999999999999999999999998754
No 324
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.93 E-value=0.0086 Score=67.15 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=32.1
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
-+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 47999999999999999999999999999987653
No 325
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.83 E-value=0.0013 Score=72.45 Aligned_cols=37 Identities=32% Similarity=0.470 Sum_probs=34.4
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
..++|+||||+|.+|+++|..|+..|.+|+|+|+.+.
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence 5679999999999999999999999999999999864
No 326
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.83 E-value=0.13 Score=50.79 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=30.1
Q ss_pred CCEEEECCCHHHHHHHHHHHhCC-------CCEEEEcCCCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLG-------IKCSVLEKNKAFS 79 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~G-------i~v~viEr~~~~~ 79 (572)
.+|+|||+|..||++|+.+.+.+ ++|.|++-+..+.
T Consensus 4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~ 46 (342)
T KOG3923|consen 4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTED 46 (342)
T ss_pred ccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccc
Confidence 58999999999999999988854 6788998776553
No 327
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.74 E-value=0.011 Score=63.10 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=27.9
Q ss_pred CEEEECCCHHHHHHHHHHHh--------------CCCCEEEEcCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTK--------------LGIKCSVLEKNKA 77 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~--------------~Gi~v~viEr~~~ 77 (572)
.|+|||||++|+-+|..|+. .|.+|+|+|+.+.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ 221 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE 221 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence 79999999999999999975 3678888887654
No 328
>PRK13984 putative oxidoreductase; Provisional
Probab=96.69 E-value=0.002 Score=72.14 Aligned_cols=37 Identities=32% Similarity=0.484 Sum_probs=33.7
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
...+|+||||||+|+++|..|+++|++|+|+|+.+.+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3468999999999999999999999999999998754
No 329
>PLN02976 amine oxidase
Probab=96.66 E-value=0.0019 Score=76.07 Aligned_cols=36 Identities=33% Similarity=0.587 Sum_probs=33.3
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
..+|+||||||+|+++|+.|++.|++|+|||+++.+
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v 728 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI 728 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence 478999999999999999999999999999997654
No 330
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.65 E-value=0.0015 Score=72.04 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=31.1
Q ss_pred CEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA 77 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~ 77 (572)
||||||||.+|+.+|..|++.| ++|+|||+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 8999999999999999999998 79999999864
No 331
>PLN02546 glutathione reductase
Probab=96.58 E-value=0.017 Score=63.69 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=31.7
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~ 286 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK 286 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence 34899999999999999999999999999998654
No 332
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.46 E-value=0.0036 Score=62.59 Aligned_cols=35 Identities=20% Similarity=0.430 Sum_probs=31.2
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
..+|+|||+|++||++|..|+++ .+|+++|.....
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rl 42 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRL 42 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccc
Confidence 46899999999999999999885 789999988755
No 333
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.40 E-value=0.02 Score=59.60 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=32.8
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
...+||+|||||=||+-+|.+-+|.|-+.+++-.+-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 567999999999999999999999999999987664
No 334
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.40 E-value=0.0038 Score=63.18 Aligned_cols=35 Identities=31% Similarity=0.393 Sum_probs=31.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~ 78 (572)
..|.|||+||||+.+|..|.++ +++|.|+||.|.|
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 4899999999999999988874 7999999999876
No 335
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.40 E-value=0.02 Score=60.22 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=44.8
Q ss_pred ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEE
Q 008258 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI 230 (572)
Q Consensus 151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vV 230 (572)
+++-..+...|.+.+.+ |+ +++++++|++++.+++++.++.. +|. +++||.||
T Consensus 131 ~idp~~~~~~l~~~~~~-G~-------------------~i~~~~~V~~i~~~~~~~~v~t~---~g~----~~~a~~vV 183 (381)
T TIGR03197 131 WLSPPQLCRALLAHAGI-RL-------------------TLHFNTEITSLERDGEGWQLLDA---NGE----VIAASVVV 183 (381)
T ss_pred ccChHHHHHHHHhccCC-Cc-------------------EEEeCCEEEEEEEcCCeEEEEeC---CCC----EEEcCEEE
Confidence 34445566666666655 65 89999999999987777666543 442 47899999
Q ss_pred eecCCChh
Q 008258 231 GTDGAGST 238 (572)
Q Consensus 231 gADG~~S~ 238 (572)
-|.|+.+.
T Consensus 184 ~a~G~~~~ 191 (381)
T TIGR03197 184 LANGAQAG 191 (381)
T ss_pred EcCCcccc
Confidence 99999874
No 336
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.33 E-value=0.021 Score=59.46 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=29.8
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~ 76 (572)
-+|+|||+|+.|+-+|..|.+.|.+ |+|+++++
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 4799999999999999999999997 99998753
No 337
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.33 E-value=0.0033 Score=65.57 Aligned_cols=38 Identities=29% Similarity=0.467 Sum_probs=32.2
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~~ 78 (572)
....+|+|||||.|||++|..|-+.| .+++|+|.....
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRI 57 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRI 57 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEecccc
Confidence 34458999999999999999999765 579999987765
No 338
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.31 E-value=0.0032 Score=65.02 Aligned_cols=35 Identities=26% Similarity=0.507 Sum_probs=33.5
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
+.++|++|||+|.-||++|..|+|.|.+|+|+||+
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerr 46 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERR 46 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEe
Confidence 56799999999999999999999999999999998
No 339
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.29 E-value=0.021 Score=59.71 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=32.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLG--IKCSVLEKNKAFS 79 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~G--i~v~viEr~~~~~ 79 (572)
..|+|||||-+|+.+|..|.+.- .++++|||+....
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl 41 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL 41 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc
Confidence 57999999999999999999984 9999999997653
No 340
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.14 E-value=0.023 Score=59.50 Aligned_cols=51 Identities=29% Similarity=0.499 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCC
Q 008258 157 LNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAG 236 (572)
Q Consensus 157 L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~ 236 (572)
+.+...+.+++.|+ +|+.++.|++++++. |++. +|. + +|.|+.+|=|-|.+
T Consensus 211 l~~~a~~~L~~~GV-------------------~v~l~~~Vt~v~~~~----v~~~---~g~--~-~I~~~tvvWaaGv~ 261 (405)
T COG1252 211 LSKYAERALEKLGV-------------------EVLLGTPVTEVTPDG----VTLK---DGE--E-EIPADTVVWAAGVR 261 (405)
T ss_pred HHHHHHHHHHHCCC-------------------EEEcCCceEEECCCc----EEEc---cCC--e-eEecCEEEEcCCCc
Confidence 33445566778887 899999999998753 4443 342 1 69999999999975
No 341
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.03 E-value=0.47 Score=50.58 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=30.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKL----GIKCSVLEKNKAF 78 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~----Gi~v~viEr~~~~ 78 (572)
.++=|||+|+|+|++|..|-|- |-++.|+|+.+.+
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~ 41 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVP 41 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCC
Confidence 4678999999999999999876 5689999998753
No 342
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.01 E-value=0.15 Score=56.10 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=54.4
Q ss_pred ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEE-EEEEeccCCceeeEEEEecEE
Q 008258 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCIN-VIASFLKEGKCTERNIQCNIL 229 (572)
Q Consensus 151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~-v~~~~~~~g~~~~~~i~ad~v 229 (572)
.++-..|...|.+.+.+.|+ +++.+++|++++.+++.+. |++.+..+| +..+++|++|
T Consensus 124 ~vdp~~l~~al~~~A~~~Ga-------------------~i~~~t~V~~i~~~~~~v~gv~v~~~~~g--~~~~i~a~~V 182 (516)
T TIGR03377 124 TVDPFRLVAANVLDAQEHGA-------------------RIFTYTKVTGLIREGGRVTGVKVEDHKTG--EEERIEAQVV 182 (516)
T ss_pred EECHHHHHHHHHHHHHHcCC-------------------EEEcCcEEEEEEEECCEEEEEEEEEcCCC--cEEEEEcCEE
Confidence 45666777788888888887 8899999999988777654 455422223 3457999999
Q ss_pred EeecCCChh-hhhhcCC
Q 008258 230 IGTDGAGST-VRKLVGI 245 (572)
Q Consensus 230 VgADG~~S~-VR~~lg~ 245 (572)
|.|-|++|. +.+.+|.
T Consensus 183 VnAaG~wa~~l~~~~g~ 199 (516)
T TIGR03377 183 INAAGIWAGRIAEYAGL 199 (516)
T ss_pred EECCCcchHHHHHhcCC
Confidence 999999886 4555554
No 343
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.95 E-value=0.056 Score=58.27 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=30.8
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
-+|+|||||.+|+=+|..|.+.|.+|+|++++.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 479999999999999999999999999998874
No 344
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.90 E-value=0.062 Score=59.56 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=31.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
-+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 5799999999999999999999999999998753
No 345
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.84 E-value=0.0084 Score=67.99 Aligned_cols=36 Identities=33% Similarity=0.498 Sum_probs=33.4
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
-..|.|||.||+||++|-.|-|.|+.|+|+||...+
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence 358999999999999999999999999999998765
No 346
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=95.53 E-value=0.51 Score=48.34 Aligned_cols=62 Identities=26% Similarity=0.313 Sum_probs=47.7
Q ss_pred ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEE
Q 008258 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI 230 (572)
Q Consensus 151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vV 230 (572)
.++-..|...|.+.+.+.|+ +++.+++|++++.++++++. +. .++| +++||.||
T Consensus 133 ~v~p~~l~~~l~~~~~~~g~-------------------~~~~~~~v~~i~~~~~~~~~-v~-~~~g-----~~~a~~vV 186 (337)
T TIGR02352 133 HVDPRALLKALEKALEKLGV-------------------EIIEHTEVQHIEIRGEKVTA-IV-TPSG-----DVQADQVV 186 (337)
T ss_pred eEChHHHHHHHHHHHHHcCC-------------------EEEccceEEEEEeeCCEEEE-EE-cCCC-----EEECCEEE
Confidence 44556788888899988887 88999999999987776542 22 1233 68999999
Q ss_pred eecCCChh
Q 008258 231 GTDGAGST 238 (572)
Q Consensus 231 gADG~~S~ 238 (572)
.|.|+.|.
T Consensus 187 ~a~G~~~~ 194 (337)
T TIGR02352 187 LAAGAWAG 194 (337)
T ss_pred EcCChhhh
Confidence 99999875
No 347
>PRK12831 putative oxidoreductase; Provisional
Probab=95.45 E-value=0.11 Score=56.29 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=30.7
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
-+|+|||||.+|+-+|..|.+.|.+|+|++++.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 489999999999999999999999999998764
No 348
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=95.40 E-value=0.0041 Score=57.87 Aligned_cols=36 Identities=33% Similarity=0.500 Sum_probs=31.6
Q ss_pred cCCEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~ 78 (572)
..||+|||||-+||++|+..++. .++|.|||..-.|
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP 113 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP 113 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence 46999999999999999999966 6899999986554
No 349
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=95.39 E-value=0.15 Score=55.15 Aligned_cols=33 Identities=15% Similarity=0.358 Sum_probs=30.0
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~ 76 (572)
-+|+|||||.+|+-+|..|++.|. +|++++++.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 489999999999999999999998 799998754
No 350
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.31 E-value=0.044 Score=60.36 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=29.7
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
-.-+|||||.-||=+|..|.+.|.++.|++-.+.
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~ 179 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPT 179 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecch
Confidence 3479999999999999999999999999975443
No 351
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.11 E-value=0.2 Score=52.35 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=29.5
Q ss_pred CcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhcCC
Q 008258 359 NQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLKDI 400 (572)
Q Consensus 359 grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~g~ 400 (572)
.+|+.+||++....+....=...|++.+..+|..|.+.++|.
T Consensus 272 ~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g~ 313 (364)
T TIGR03169 272 PHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRGQ 313 (364)
T ss_pred CCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcCC
Confidence 689999999975432222223468888888888888877664
No 352
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=95.03 E-value=1.8 Score=45.69 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=33.7
Q ss_pred cceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258 188 GREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (572)
Q Consensus 188 ~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S 237 (572)
+.+|+++++|++|+.+++++++++. .+|. ++.||.||.|--...
T Consensus 211 g~~i~~~~~V~~i~~~~~~~~~~~~--~~g~----~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 211 GGEVRLGTRVRSIEANAGGIRALVL--SGGE----TLPADAVVLAVPPRH 254 (419)
T ss_pred CCEEEcCCeeeEEEEcCCcceEEEe--cCCc----cccCCEEEEcCCHHH
Confidence 4589999999999998888776654 1332 578999999876543
No 353
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.02 E-value=0.025 Score=51.55 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=30.1
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
+|.|+|||..|.++|..|+++|.+|.++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999865
No 354
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=94.95 E-value=0.025 Score=61.55 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=35.0
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKL-GIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~-Gi~v~viEr~~~~ 78 (572)
..++|.+|||||-||+.+|.-|++. .++|+|+|+...+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 5679999999999999999999997 7999999998776
No 355
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.74 E-value=0.039 Score=56.47 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=31.5
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
...+|+|||+|-.|.++|..|++.|.+|+++.|.+
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 34579999999999999999999999999998853
No 356
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.72 E-value=0.033 Score=60.22 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=31.6
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.|+|||+|++|+++|..|++.|++|.++|+...+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999988664
No 357
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=94.70 E-value=0.036 Score=58.81 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=30.0
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
..++||+|+|-|..-+.+|.+|++.|.+|+.+||++--
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yY 39 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYY 39 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCc
Confidence 56799999999999999999999999999999999765
No 358
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=94.68 E-value=0.31 Score=52.94 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=26.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKN 75 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~ 75 (572)
-+|+|||||.+|+-+|..+.+.|. +|++++..
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 479999999999999998888886 57765543
No 359
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.98 Score=45.50 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=31.4
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
.++|.+|||||-+||++|-..+..|-+|.++|--
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV 51 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV 51 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence 3599999999999999999999999999999853
No 360
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=94.63 E-value=0.28 Score=55.45 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=29.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~ 76 (572)
-+|+|||||.+|+-+|..|.+.|. +|+|++++.
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 479999999999999999999997 499998764
No 361
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.55 E-value=0.033 Score=52.00 Aligned_cols=33 Identities=21% Similarity=0.541 Sum_probs=28.5
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
.|.|||||.-|...|..++++|++|+++|..+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 389999999999999999999999999998654
No 362
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.53 E-value=0.041 Score=53.38 Aligned_cols=57 Identities=18% Similarity=0.309 Sum_probs=42.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCC-----C--CeeeeChhHHHHHHhhcchH
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFSTH-----P--QAHFINNRYALVFRKLDGLA 102 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~~~-----~--~a~~l~~rt~e~l~~l~Gl~ 102 (572)
+++|||+|..|.++|-.|.+.|.+|+++|+.+..... . .++..+..-.++|+++ |+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~a-gi~ 65 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEA-GID 65 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhc-CCC
Confidence 6999999999999999999999999999999765211 1 2233334445666666 553
No 363
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=94.42 E-value=0.39 Score=55.40 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=30.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~ 76 (572)
-+|+|||||.+|+-+|..|.+.|.+ |+|+++++
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4799999999999999999999998 99998764
No 364
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.40 E-value=0.042 Score=59.84 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=30.7
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
-+|+|||+|++|+.+|..|+++|.+|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 369999999999999999999999999999765
No 365
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.36 E-value=0.37 Score=57.22 Aligned_cols=33 Identities=9% Similarity=0.173 Sum_probs=29.1
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~ 76 (572)
-+|+|||+|+.|+-+|..|++.|.+ |+|+|..+
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~ 351 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA 351 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc
Confidence 4799999999999999999999965 78888653
No 366
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=94.19 E-value=0.97 Score=47.83 Aligned_cols=65 Identities=14% Similarity=0.238 Sum_probs=50.2
Q ss_pred ccChhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEE
Q 008258 151 HFSQYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILI 230 (572)
Q Consensus 151 ~l~q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vV 230 (572)
+++-.+|.+.|.+.+++.|+ ++..+++|++++.+++.++.... +++. +.++++|.+|
T Consensus 259 Sv~G~RL~~aL~~~~~~~Gg-------------------~il~g~~V~~i~~~~~~v~~V~t--~~g~--~~~l~AD~vV 315 (419)
T TIGR03378 259 SLLGIRLEEALKHRFEQLGG-------------------VMLPGDRVLRAEFEGNRVTRIHT--RNHR--DIPLRADHFV 315 (419)
T ss_pred CCcHHHHHHHHHHHHHHCCC-------------------EEEECcEEEEEEeeCCeEEEEEe--cCCc--cceEECCEEE
Confidence 45566888889999999987 88889999999888887765442 1321 2368999999
Q ss_pred eecCCC-hh
Q 008258 231 GTDGAG-ST 238 (572)
Q Consensus 231 gADG~~-S~ 238 (572)
-|.|+. |.
T Consensus 316 LAaGaw~S~ 324 (419)
T TIGR03378 316 LASGSFFSN 324 (419)
T ss_pred EccCCCcCH
Confidence 999998 64
No 367
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.07 E-value=0.038 Score=51.84 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=27.1
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
.|.|||.|-+||.+|..|++.|++|+.+|.++.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 699999999999999999999999999998754
No 368
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.96 E-value=0.071 Score=47.99 Aligned_cols=31 Identities=26% Similarity=0.599 Sum_probs=29.2
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 46 VlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
|+|+|+|-.|+..|..|++.|.+|.++.|.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998865
No 369
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.57 E-value=0.09 Score=56.70 Aligned_cols=34 Identities=41% Similarity=0.605 Sum_probs=31.5
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
.-+|+|+|+|.+|+.+|..|++.|.+|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3579999999999999999999999999999865
No 370
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=93.56 E-value=0.53 Score=47.04 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=31.8
Q ss_pred CCccCCEEEECCCHHHHHHHHHHHhC-C-CCEEEEcCCCCC
Q 008258 40 NEAVVPVLIVGAGPVGLVLSILLTKL-G-IKCSVLEKNKAF 78 (572)
Q Consensus 40 ~~~~~dVlIVGaGpaGL~~A~~La~~-G-i~v~viEr~~~~ 78 (572)
...++.|+|||||-+|++.|..+.+. | -+|.|+|-...-
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H 76 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH 76 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc
Confidence 35678999999999999999999876 4 368899866543
No 371
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=93.56 E-value=0.21 Score=52.24 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecC
Q 008258 155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDG 234 (572)
Q Consensus 155 ~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG 234 (572)
..+...|...+++.|+ +|+++++|.++ ++++..+.+. ++. .+++||.||-|.|
T Consensus 86 ~sVv~~L~~~l~~~gV-------------------~i~~~~~V~~i--~~~~~~v~~~---~~~---~~~~a~~vIlAtG 138 (376)
T TIGR03862 86 APLLRAWLKRLAEQGV-------------------QFHTRHRWIGW--QGGTLRFETP---DGQ---STIEADAVVLALG 138 (376)
T ss_pred HHHHHHHHHHHHHCCC-------------------EEEeCCEEEEE--eCCcEEEEEC---CCc---eEEecCEEEEcCC
Confidence 4677789999999887 89999999999 2334545443 221 2589999999999
Q ss_pred CCh
Q 008258 235 AGS 237 (572)
Q Consensus 235 ~~S 237 (572)
..|
T Consensus 139 G~s 141 (376)
T TIGR03862 139 GAS 141 (376)
T ss_pred Ccc
Confidence 877
No 372
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=93.44 E-value=0.7 Score=48.73 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=32.7
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
...|++||+|-.|+-+|..|.-.+.+|++|++.+.+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~ 248 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL 248 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc
Confidence 457999999999999999999999999999987665
No 373
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=93.40 E-value=1.2 Score=46.72 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=34.9
Q ss_pred ceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChhh
Q 008258 189 REILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGSTV 239 (572)
Q Consensus 189 ~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~V 239 (572)
.+|+++++|++|+.++++|++++. +|+ +++||.||.|-......
T Consensus 224 ~~i~l~~~V~~I~~~~~~v~v~~~---~g~----~~~ad~VI~a~p~~~l~ 267 (450)
T PF01593_consen 224 GEIRLNTPVTRIEREDGGVTVTTE---DGE----TIEADAVISAVPPSVLK 267 (450)
T ss_dssp GGEESSEEEEEEEEESSEEEEEET---TSS----EEEESEEEE-S-HHHHH
T ss_pred ceeecCCcceeccccccccccccc---cce----EEecceeeecCchhhhh
Confidence 489999999999999999988876 554 78999999988865433
No 374
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.39 E-value=1.7 Score=48.47 Aligned_cols=64 Identities=14% Similarity=0.111 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeC-CeEEEE-EEeccCCceeeEEEEecEEEee
Q 008258 155 YKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATD-QCINVI-ASFLKEGKCTERNIQCNILIGT 232 (572)
Q Consensus 155 ~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~-~~v~v~-~~~~~~g~~~~~~i~ad~vVgA 232 (572)
..+.+.|.+.+.+.|+ +++.++.++++..++ +.|.-. .....+| ..+.+.|+-||-|
T Consensus 126 ~~i~~~L~~~~~~~gi-------------------~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g--~~~~i~AkaVVLA 184 (570)
T PRK05675 126 HALLHTLYQGNLKNGT-------------------TFLNEWYAVDLVKNQDGAVVGVIAICIETG--ETVYIKSKATVLA 184 (570)
T ss_pred HHHHHHHHHHHhccCC-------------------EEEECcEEEEEEEcCCCeEEEEEEEEcCCC--cEEEEecCeEEEC
Confidence 3577788888877776 888899999887653 333322 2222244 4567999999999
Q ss_pred cCCChhh
Q 008258 233 DGAGSTV 239 (572)
Q Consensus 233 DG~~S~V 239 (572)
.|..+.+
T Consensus 185 TGG~~~~ 191 (570)
T PRK05675 185 TGGAGRI 191 (570)
T ss_pred CCCcccc
Confidence 9988754
No 375
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.30 E-value=0.085 Score=53.81 Aligned_cols=33 Identities=27% Similarity=0.543 Sum_probs=31.1
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
+|.|||+|.-|..+|..|+++|++|+++|+.+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 699999999999999999999999999998864
No 376
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.22 E-value=0.11 Score=52.98 Aligned_cols=33 Identities=21% Similarity=0.489 Sum_probs=30.7
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
++|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 469999999999999999999999999999864
No 377
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=93.10 E-value=0.086 Score=46.69 Aligned_cols=33 Identities=30% Similarity=0.482 Sum_probs=28.9
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 46 VlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
++|+|||+.+.++|..++..|++|+|+|-+++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~ 33 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER 33 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc
Confidence 589999999999999999999999999988764
No 378
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.99 E-value=0.14 Score=48.79 Aligned_cols=32 Identities=38% Similarity=0.525 Sum_probs=29.8
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
-.|+|||||.+|..-+..|.+.|.+|+|++..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999999999999999999999999999864
No 379
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=92.96 E-value=0.35 Score=50.23 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=28.6
Q ss_pred ceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258 189 REILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (572)
Q Consensus 189 ~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S 237 (572)
++++.++.|..++... +.+... +|+ ..+|.+-++|.|.|...
T Consensus 288 I~~~~~t~Vk~V~~~~--I~~~~~---~g~--~~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 288 IDLDTGTMVKKVTEKT--IHAKTK---DGE--IEEIPYGLLVWATGNGP 329 (491)
T ss_pred ceeecccEEEeecCcE--EEEEcC---CCc--eeeecceEEEecCCCCC
Confidence 3888888888887542 333322 453 35788999999999653
No 380
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.82 E-value=0.11 Score=52.39 Aligned_cols=34 Identities=26% Similarity=0.473 Sum_probs=31.8
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.|.|||+|.-|...|..|++.|++|+++|+.++.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 6999999999999999999999999999988654
No 381
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.69 E-value=0.16 Score=46.29 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=28.7
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEc
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLE 73 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viE 73 (572)
.-.|+|||||.+|+.-|..|.+.|.+|+||.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 3579999999999999999999999999995
No 382
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.56 E-value=0.18 Score=47.92 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=31.0
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~ 76 (572)
+..|+|||+|-.|...|..|++.|+ +++|+|...
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4689999999999999999999999 599999773
No 383
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.53 E-value=0.13 Score=52.15 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=29.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
+|+|||+|-.|.++|..|++.|.+|++++|++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 59999999999999999999999999999854
No 384
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.49 E-value=0.15 Score=51.83 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=28.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr 74 (572)
+|+|+|+|..|.++|..|++.|.+|.+++|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 599999999999999999999999999987
No 385
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.46 E-value=0.14 Score=51.72 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=30.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
.|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 699999999999999999999999999997654
No 386
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.41 E-value=0.15 Score=51.48 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=31.2
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
.+|.|||+|.-|...|..|++.|++|+++|+.+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 3699999999999999999999999999998754
No 387
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.39 E-value=0.14 Score=43.62 Aligned_cols=32 Identities=28% Similarity=0.540 Sum_probs=28.9
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 46 VLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 46 VlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
|+|||.|..|..++..|.+.+++|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999998889999999864
No 388
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.22 E-value=0.13 Score=55.71 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=31.8
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
.-+|+|+|+|++|+.++..++..|.+|.++|.++.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 45899999999999999999999999999998754
No 389
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.13 E-value=0.16 Score=53.23 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=31.2
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
..+|+|||+|.+|+.+|..|.+.|.+|.++|+++
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3569999999999999999999999999999864
No 390
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.05 E-value=0.16 Score=51.26 Aligned_cols=33 Identities=18% Similarity=0.470 Sum_probs=30.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
.|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 599999999999999999999999999998765
No 391
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.99 E-value=0.16 Score=53.51 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=31.0
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
-.|+|+|+|+.|+.+|..++..|.+|+++|+.+.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 4799999999999999999999999999998653
No 392
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.92 E-value=0.16 Score=51.29 Aligned_cols=33 Identities=15% Similarity=0.434 Sum_probs=30.8
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
.|.|||+|.-|...|..|++.|++|+++|+.+.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 599999999999999999999999999998754
No 393
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.87 E-value=0.19 Score=51.23 Aligned_cols=33 Identities=39% Similarity=0.477 Sum_probs=30.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA 77 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~ 77 (572)
+|.|||+|.+|+++|+.|++.|+ .+.++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 59999999999999999999994 7999998754
No 394
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=91.76 E-value=0.12 Score=43.34 Aligned_cols=34 Identities=35% Similarity=0.475 Sum_probs=30.3
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
.-.|+|||||++|..-+..|.+.|-+|+|+.+..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 4579999999999999999999999999998653
No 395
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.71 E-value=0.26 Score=50.39 Aligned_cols=37 Identities=30% Similarity=0.477 Sum_probs=32.5
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA 77 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~ 77 (572)
....+|.|||+|-+|.++|+.|+..|+ +++|+|.+..
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 445689999999999999999999998 7999998654
No 396
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.66 E-value=0.2 Score=44.28 Aligned_cols=34 Identities=32% Similarity=0.519 Sum_probs=30.0
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~ 76 (572)
+..|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 3579999999999999999999999 599999764
No 397
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.64 E-value=0.25 Score=47.04 Aligned_cols=32 Identities=34% Similarity=0.376 Sum_probs=29.5
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEK 74 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr 74 (572)
.-.|+|||||-+|...|..|.+.|.+|+|+++
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 35899999999999999999999999999975
No 398
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.64 E-value=0.19 Score=50.57 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=31.3
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
+|.|||+|..|...|..|+++|++|+++|+++..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~ 38 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAA 38 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHH
Confidence 5999999999999999999999999999987653
No 399
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.58 E-value=0.25 Score=50.48 Aligned_cols=33 Identities=12% Similarity=0.190 Sum_probs=31.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
.|.|||+|.-|...|..++.+|++|+++|+.+.
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 599999999999999999999999999998764
No 400
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.58 E-value=0.23 Score=45.71 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=29.7
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
...|+|+|+|.+|..+|..|...|.+++++|..+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 3679999999999999999999999999999764
No 401
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.56 E-value=0.27 Score=48.82 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=31.4
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~ 77 (572)
.+..|+|||+|-+|..+|..|++.|+ +++|+|.+.-
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 34689999999999999999999996 6999997643
No 402
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.29 E-value=0.27 Score=50.69 Aligned_cols=36 Identities=33% Similarity=0.472 Sum_probs=32.1
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~ 76 (572)
-.+..|+|||+|-.|..+|..|++.|+ +++|+|++.
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 334689999999999999999999999 799999875
No 403
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.27 E-value=1.3 Score=50.33 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=29.2
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~ 77 (572)
-+|+|||||.+|+-+|..+.+.|. +|+++.+++.
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~ 503 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE 503 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCC
Confidence 479999999999999999889997 5888887643
No 404
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=91.26 E-value=0.32 Score=42.99 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=30.6
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~ 76 (572)
.-.|+|||+|-+|-+++..|+..|.+ +.|+.|..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 35799999999999999999999998 99998753
No 405
>PRK04148 hypothetical protein; Provisional
Probab=91.14 E-value=0.2 Score=44.06 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=30.2
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
..|++||.| .|...|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 469999999 999999999999999999998765
No 406
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=91.11 E-value=0.34 Score=46.13 Aligned_cols=36 Identities=25% Similarity=0.448 Sum_probs=31.9
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~ 76 (572)
-.+..|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 345789999999999999999999998 799999764
No 407
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.07 E-value=0.24 Score=51.03 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=31.6
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
+|.|||.|-+||+.|..|++.|++|+.+|..+..
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~K 35 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESK 35 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 6899999999999999999999999999988653
No 408
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=91.05 E-value=0.3 Score=49.70 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=30.1
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~ 77 (572)
.+|.|||+|-.|+..|..|+.+|+ +|+++|....
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 369999999999999999999887 8999998433
No 409
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=90.99 E-value=0.74 Score=47.56 Aligned_cols=50 Identities=14% Similarity=0.283 Sum_probs=34.7
Q ss_pred eEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCC--ChhhhhhcCCc
Q 008258 190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA--GSTVRKLVGID 246 (572)
Q Consensus 190 ~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~--~S~VR~~lg~~ 246 (572)
+|+-+..|.++......+.+.+. +|. +++.|+||.|-|. +|-+.+.-|+.
T Consensus 409 ~V~pna~v~sv~~~~~nl~lkL~---dG~----~l~tD~vVvavG~ePN~ela~~sgLe 460 (659)
T KOG1346|consen 409 DVRPNAKVESVRKCCKNLVLKLS---DGS----ELRTDLVVVAVGEEPNSELAEASGLE 460 (659)
T ss_pred eeccchhhhhhhhhccceEEEec---CCC----eeeeeeEEEEecCCCchhhcccccce
Confidence 56666666666666666767776 775 7899999999994 56555544443
No 410
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=90.94 E-value=2 Score=46.59 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=30.1
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~ 77 (572)
-.|+|||+|.+|+-+|..+.+.|. +|+|+++++.
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 479999999999999999999996 6999988654
No 411
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=90.64 E-value=0.34 Score=43.18 Aligned_cols=34 Identities=35% Similarity=0.664 Sum_probs=29.8
Q ss_pred CCEEEECC-CHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 008258 44 VPVLIVGA-GPVGLVLSILLTKLGI--KCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGa-GpaGL~~A~~La~~Gi--~v~viEr~~~ 77 (572)
++|.|||+ |.+|.++|+.|...++ +++++|....
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~ 37 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED 37 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence 36999999 9999999999999975 5999998754
No 412
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=90.59 E-value=5.6 Score=42.42 Aligned_cols=191 Identities=15% Similarity=0.174 Sum_probs=97.4
Q ss_pred eeccCccccCCCCCCCCCCcccccCC--CCccCCEEEECCCHHHH------HHHHHHH--hCCCCEEEEcCC-CCCCCCC
Q 008258 14 SRIKTFPYPYGYTQCRALSDSKTIVS--NEAVVPVLIVGAGPVGL------VLSILLT--KLGIKCSVLEKN-KAFSTHP 82 (572)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~dVlIVGaGpaGL------~~A~~La--~~Gi~v~viEr~-~~~~~~~ 82 (572)
.++..+++|++...+.-++|.+|... ....-+++||| +-|+ .+|-.|. +.|+++...+=. +......
T Consensus 107 ~~n~~~~T~~Gt~kpt~l~p~~~~~~~~~~~~~~~~vvg--~~g~~dF~~~~~a~~L~~~~~~~~~~~~~i~~p~~~~~~ 184 (422)
T PRK05329 107 ERNHLRPTPLGTLRPTWLSPPSVPAGVALLDAKRILVVG--IEGLRDFQPHLAAANLHAQFQGLEVRTAELELPGLDRDN 184 (422)
T ss_pred CCceeeeccccccchhhhCchhhhcccccCccCcEEEEE--CccccCCCHHHHHHHHhhccCCCceEEEEEECCCccccC
Confidence 36666888888887777888887543 23345799997 4333 2344443 457666654422 2211011
Q ss_pred CeeeeChhHHHHHHhh---cchHHHHHhcCCCcccccceeeeeCCCCCeee-----eec-CCCccccccccCCccccccC
Q 008258 83 QAHFINNRYALVFRKL---DGLAEEIERSQPPVDLWRKFIYCTSVTGPILG-----SVD-HMQPQDFEKVVSPVSVAHFS 153 (572)
Q Consensus 83 ~a~~l~~rt~e~l~~l---~Gl~~~l~~~~~~~~~~~~~~~~~~~~G~~~~-----~~~-~~~~~~~~~~~sp~~~~~l~ 153 (572)
....-..+--++|+.- .-|.+++.....+.+. +.....-|-+.. .+. ..+. ... ..|.....++
T Consensus 185 ~~e~~~~~iAr~ld~~~~~~~l~~~l~~~~~~~~~----V~~PavIGle~a~~v~~~L~~~LG~-~V~--~vp~~ppslp 257 (422)
T PRK05329 185 PREFRAVNIARLLDDPENREALADALKPLAGDAEA----VLLPAVLGLDDDAAVLAELEEALGC-PVF--ELPTLPPSVP 257 (422)
T ss_pred cccccHHHHHHHhCChhHHHHHHHHHHHhcCCCCE----EEECceecCCChHHHHHHHHHHHCC-CEE--EeCCCCCCCc
Confidence 1111111122223221 0244555544333221 111111111111 000 0000 000 0011112233
Q ss_pred hhhHHHHHHHHHHhcCceeeccCCcccccccccccceEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeec
Q 008258 154 QYKLNKLLLKQLEKLNFKICTSEGTEGLHNHLLQGREILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTD 233 (572)
Q Consensus 154 q~~L~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgAD 233 (572)
-.++.+.|.+.+.+.|+ +++.+++|++++.+++++++... .++ .+..+++|.||-|.
T Consensus 258 G~rL~~aL~~~l~~~Gv-------------------~I~~g~~V~~v~~~~~~V~~v~~--~~g--~~~~i~AD~VVLAt 314 (422)
T PRK05329 258 GLRLQNALRRAFERLGG-------------------RIMPGDEVLGAEFEGGRVTAVWT--RNH--GDIPLRARHFVLAT 314 (422)
T ss_pred hHHHHHHHHHHHHhCCC-------------------EEEeCCEEEEEEEeCCEEEEEEe--eCC--ceEEEECCEEEEeC
Confidence 44788888888888887 89999999999987777665443 233 23478999999999
Q ss_pred CCC
Q 008258 234 GAG 236 (572)
Q Consensus 234 G~~ 236 (572)
|..
T Consensus 315 Grf 317 (422)
T PRK05329 315 GSF 317 (422)
T ss_pred CCc
Confidence 964
No 413
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.52 E-value=0.27 Score=50.59 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=29.9
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
+|.|||+|..|.++|..|++.|.+|.++.|++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999999999999999864
No 414
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.51 E-value=0.36 Score=49.86 Aligned_cols=35 Identities=29% Similarity=0.580 Sum_probs=31.8
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~ 76 (572)
.+..|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 35689999999999999999999999 799999864
No 415
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=90.48 E-value=0.33 Score=50.19 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=29.5
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
+|.|||+|-.|...|..|++.|++|.+++|.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 6999999999999999999999999999974
No 416
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=90.48 E-value=26 Score=37.62 Aligned_cols=50 Identities=6% Similarity=0.207 Sum_probs=33.5
Q ss_pred eEEeccEEEEEeeeCCe-E-EEEEEeccCCc-eeeEEEEecEEEeecCCChhhhhhc
Q 008258 190 EILMGHECVSVSATDQC-I-NVIASFLKEGK-CTERNIQCNILIGTDGAGSTVRKLV 243 (572)
Q Consensus 190 ~i~~g~~v~~v~~~~~~-v-~v~~~~~~~g~-~~~~~i~ad~vVgADG~~S~VR~~l 243 (572)
+|+++++|++|++++++ + .+++. +++ ++.+++.||.||-|-..+. +++.+
T Consensus 229 ~i~l~~~V~~I~~~~~~~v~~v~~~---~~~~~~~~~~~a~~VI~a~p~~~-~~~lL 281 (453)
T TIGR02731 229 EVRLNSRLKEIVLNEDGSVKHFVLA---DGEGQRRFEVTADAYVSAMPVDI-FKLLL 281 (453)
T ss_pred EEeCCCeeEEEEECCCCCEEEEEEe---cCCCCceeEEECCEEEEcCCHHH-HHhhC
Confidence 89999999999875554 3 24443 222 1223688999999987754 55555
No 417
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=90.37 E-value=0.26 Score=46.46 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=28.8
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
.-+|+|||+|.++.-+|..|++.|-+|.++=|.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 3679999999999999999999999999998875
No 418
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=90.30 E-value=0.41 Score=46.99 Aligned_cols=37 Identities=27% Similarity=0.352 Sum_probs=33.4
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
....++|+|||+.+..+|..++..|++|+|+|-+++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~ 135 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAE 135 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCccc
Confidence 3468999999999999999999999999999987663
No 419
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.27 E-value=0.28 Score=52.29 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=31.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
..|.|||.|-.|+.+|..|+++|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 4699999999999999999999999999998765
No 420
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=90.11 E-value=0.41 Score=44.04 Aligned_cols=34 Identities=29% Similarity=0.336 Sum_probs=30.4
Q ss_pred ccCCEEEECCCH-HHHHHHHHHHhCCCCEEEEcCC
Q 008258 42 AVVPVLIVGAGP-VGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 42 ~~~dVlIVGaGp-aGL~~A~~La~~Gi~v~viEr~ 75 (572)
...+|+|||+|- +|..+|..|.+.|.+|.++.|.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 346899999996 7999999999999999999986
No 421
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.03 E-value=0.48 Score=48.53 Aligned_cols=35 Identities=17% Similarity=0.392 Sum_probs=31.9
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKAF 78 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~~ 78 (572)
.+|.|||||-.|.++|..|+..|+ +++|+|..+..
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 589999999999999999999996 89999987764
No 422
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.98 E-value=0.39 Score=49.01 Aligned_cols=33 Identities=21% Similarity=0.512 Sum_probs=30.5
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~ 38 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG 38 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 699999999999999999999999999997653
No 423
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.95 E-value=0.48 Score=43.92 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=29.4
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~ 76 (572)
.|+|||+|-.|...|..|++.|+. ++|+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 489999999999999999999996 99999864
No 424
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=89.89 E-value=0.51 Score=45.29 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=31.4
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~ 76 (572)
.+..|+|||+|-.|..+|..|++.|+. ++|+|.+.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 356899999999999999999999996 99999764
No 425
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=89.88 E-value=0.2 Score=43.79 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=28.3
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
....+|-|||+|-+|-++|.+|.+.|+.|.-+..+
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 44578999999999999999999999998877644
No 426
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.84 E-value=0.45 Score=51.21 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=31.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
..|+|+|+|.+|+++|..|+++|.+|+++|..+.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4699999999999999999999999999997654
No 427
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=89.76 E-value=1.6 Score=45.49 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=35.7
Q ss_pred eEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCCChh
Q 008258 190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGAGST 238 (572)
Q Consensus 190 ~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S~ 238 (572)
.-++..+++.++.+...|.+..... ++...+..+.+||||-|-|+...
T Consensus 124 ~~y~eAec~~iDp~~k~V~~~s~t~-~~~~~e~~i~YDyLViA~GA~~~ 171 (491)
T KOG2495|consen 124 VKYLEAECTKIDPDNKKVHCRSLTA-DSSDKEFVIGYDYLVIAVGAEPN 171 (491)
T ss_pred ceEEecccEeecccccEEEEeeecc-CCCcceeeecccEEEEeccCCCC
Confidence 3456778888888888877765533 33346678999999999999864
No 428
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.63 E-value=0.41 Score=49.76 Aligned_cols=33 Identities=36% Similarity=0.672 Sum_probs=27.3
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNKA 77 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~~ 77 (572)
.|+|+|+||.||+++..++..|.. |+++|+.+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~ 204 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE 204 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence 599999999999998888888965 666677654
No 429
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=89.62 E-value=2.8 Score=49.44 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=29.6
Q ss_pred cCCEEEECCCHHHHHHHHHHHhC-CC-CEEEEcCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKL-GI-KCSVLEKNK 76 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~-Gi-~v~viEr~~ 76 (572)
.-+|+|||||.+|+=+|..+.+. |. +|+|++++.
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 35799999999999999998886 86 799999875
No 430
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.49 E-value=0.43 Score=49.10 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=30.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
.|.|||+|.-|.+.|..|++.|++|++++|.+.
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~ 38 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRPE 38 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 699999999999999999999999999998643
No 431
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.45 E-value=0.5 Score=48.14 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=31.9
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
..+|.|||+|-.|.++|..|++.|++|.+++|.+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 34699999999999999999999999999998754
No 432
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=89.44 E-value=0.32 Score=51.78 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=31.3
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
+|.|||.|-.|+.+|..|++.|++|+++|+++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~ 35 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEK 35 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHH
Confidence 5999999999999999999999999999987653
No 433
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=89.38 E-value=0.3 Score=51.48 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 53 PVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 53 paGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
+|||++|..|++.|++|+|+|+...+
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~ 26 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRV 26 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSS
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCC
Confidence 58999999999999999999999765
No 434
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.34 E-value=0.43 Score=50.25 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=31.8
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
.-.|+|+|.|+.|..+|..|+..|.+|+++|+.+.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 34799999999999999999999999999998764
No 435
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.33 E-value=0.47 Score=48.34 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=30.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~ 77 (572)
.+|.|||||..|.++|..|++.|+ +++++|..++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 379999999999999999999876 9999999654
No 436
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=89.29 E-value=0.37 Score=52.14 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=31.7
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
...|+|+|+|++|+.++..+...|.+|+++|+++.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 36899999999999999999999999999998754
No 437
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=89.27 E-value=0.6 Score=41.59 Aligned_cols=33 Identities=27% Similarity=0.567 Sum_probs=29.6
Q ss_pred CEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~ 77 (572)
.|+|||+|-.|...|..|++.|+ +++|+|...-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 48999999999999999999999 5999997643
No 438
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.16 E-value=0.54 Score=47.53 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=32.7
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
..++|.+|||||-.|+++|...+.+|.++.|+|..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~ 52 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELP 52 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence 44799999999999999999999999999999975
No 439
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=89.10 E-value=0.6 Score=45.71 Aligned_cols=35 Identities=31% Similarity=0.460 Sum_probs=30.6
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~ 76 (572)
....|+|||+|-.|..+|..|++.|+. ++|+|.+.
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 356899999999999999999999985 77888764
No 440
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.89 E-value=0.44 Score=51.92 Aligned_cols=32 Identities=34% Similarity=0.622 Sum_probs=29.7
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
-.|+|+|.|++|++++..|.+.|.+|++.|+.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 36999999999999999999999999999965
No 441
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.73 E-value=0.57 Score=50.40 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=30.9
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
-.|+|+|+|.+|.++|..|++.|.+|.+.|+...
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 3589999999999999999999999999997653
No 442
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.67 E-value=0.41 Score=48.01 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=29.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
+|.|||.|..|.++|..|++.|++|.++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 59999999999999999999999999999854
No 443
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=88.65 E-value=0.54 Score=47.57 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=31.2
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.|.|||+|.-|...|..|++.|++|.++|+.+..
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 39 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAA 39 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 5999999999999999999999999999987643
No 444
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=88.50 E-value=0.57 Score=47.15 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=30.2
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~ 76 (572)
.+|+|+|+|-+|.++|..|++.|+ +++|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 479999999999999999999998 699999874
No 445
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=88.43 E-value=0.43 Score=53.00 Aligned_cols=35 Identities=34% Similarity=0.469 Sum_probs=32.5
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
+-+|+|||+|+.|-.+|..|.++|++++++|++++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 45799999999999999999999999999999865
No 446
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=88.37 E-value=0.49 Score=48.43 Aligned_cols=33 Identities=24% Similarity=0.526 Sum_probs=30.5
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
+|.|||+|..|...|..|++.|++|.+++|.+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~ 35 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPE 35 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 699999999999999999999999999998643
No 447
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=88.32 E-value=0.57 Score=47.74 Aligned_cols=34 Identities=32% Similarity=0.518 Sum_probs=30.3
Q ss_pred CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAF 78 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~~ 78 (572)
.|+|||+|-+|.++|..|+..|+ ++.++|+....
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~ 37 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEK 37 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcch
Confidence 58999999999999999999994 69999997653
No 448
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.31 E-value=0.51 Score=47.80 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=31.9
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
...|+|+|.|.+|.++|..|++.|.+|.+++|++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 45899999999999999999999999999998743
No 449
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=88.26 E-value=0.73 Score=46.98 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=34.9
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~ 79 (572)
.+||+|+|-|+.-+.++.+|+..|-+|+.|||++.-.
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG 42 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYG 42 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccC
Confidence 6999999999999999999999999999999998754
No 450
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=88.15 E-value=0.74 Score=45.25 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=31.0
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~ 76 (572)
.+.+|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 35689999999999999999999998 588998763
No 451
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=88.12 E-value=0.61 Score=49.46 Aligned_cols=34 Identities=29% Similarity=0.330 Sum_probs=31.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
-.|+|+|.|+.|..+|..|+..|.+|+++|+.+.
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 4699999999999999999999999999998764
No 452
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.09 E-value=0.7 Score=47.12 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=30.5
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKA 77 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~ 77 (572)
+.+|.|||+|-+|.++|+.|+..|+ +++|+|....
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~ 39 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED 39 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 4589999999999999999999886 5899998754
No 453
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=88.05 E-value=0.7 Score=45.20 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=30.1
Q ss_pred CccCCEEEECCCHHHHHHHHHHHhCC-----------CCEEEEcCCC
Q 008258 41 EAVVPVLIVGAGPVGLVLSILLTKLG-----------IKCSVLEKNK 76 (572)
Q Consensus 41 ~~~~dVlIVGaGpaGL~~A~~La~~G-----------i~v~viEr~~ 76 (572)
..+.+|+|||+|-.|..++-.|++.| .+++|+|.+.
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 34578999999999999999999974 2788888654
No 454
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.93 E-value=0.54 Score=50.64 Aligned_cols=33 Identities=30% Similarity=0.517 Sum_probs=31.0
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
+|+|||+|..|..+|..|.+.|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 699999999999999999999999999999765
No 455
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=87.71 E-value=2.5 Score=44.71 Aligned_cols=37 Identities=19% Similarity=0.462 Sum_probs=29.6
Q ss_pred eEEeccEEEEEeeeCCeEEEEEEeccCCceeeEEEEecEEEeecCC
Q 008258 190 EILMGHECVSVSATDQCINVIASFLKEGKCTERNIQCNILIGTDGA 235 (572)
Q Consensus 190 ~i~~g~~v~~v~~~~~~v~v~~~~~~~g~~~~~~i~ad~vVgADG~ 235 (572)
+++++++++.++-.+.. +.+. +|. ++..+.+|-|.|.
T Consensus 143 e~~~~t~v~~~D~~~K~--l~~~---~Ge----~~kys~LilATGs 179 (478)
T KOG1336|consen 143 ELILGTSVVKADLASKT--LVLG---NGE----TLKYSKLIIATGS 179 (478)
T ss_pred eEEEcceeEEeeccccE--EEeC---CCc----eeecceEEEeecC
Confidence 88999999999877655 3343 553 7899999999998
No 456
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.68 E-value=0.82 Score=44.43 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=30.6
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~ 76 (572)
+..|+|||.|-.|..+|..|++.|+ +++|+|.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4689999999999999999999998 688998764
No 457
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=87.46 E-value=0.9 Score=44.08 Aligned_cols=35 Identities=29% Similarity=0.461 Sum_probs=30.7
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~ 76 (572)
.+..|+|||+|..|...|..|++.|+ +++|+|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 35689999999999999999999998 588888664
No 458
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=87.44 E-value=0.78 Score=44.46 Aligned_cols=34 Identities=32% Similarity=0.533 Sum_probs=30.7
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCC---EEEEcCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIK---CSVLEKNK 76 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~---v~viEr~~ 76 (572)
+..|+|+|||-+|...|..|.+.|++ +.|++|..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 35799999999999999999999985 99999974
No 459
>PRK08328 hypothetical protein; Provisional
Probab=87.42 E-value=0.91 Score=44.17 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=30.0
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~ 76 (572)
+..|+|||+|-.|..+|..|++.|+. ++|+|...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 46899999999999999999999985 78887654
No 460
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=87.35 E-value=0.65 Score=47.14 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=28.9
Q ss_pred EEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258 46 VLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (572)
Q Consensus 46 VlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~ 77 (572)
|.|||+|-.|..+|..|+..|+ +++++|..+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence 6799999999999999999887 9999998743
No 461
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.28 E-value=0.69 Score=50.03 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=31.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
..|+|+|.|.+|.++|..|.+.|++|.+.|+.+.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 3699999999999999999999999999998754
No 462
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=87.26 E-value=0.66 Score=50.72 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=32.0
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
-.|.|||+|.-|...|..|++.|++|+++|+.++.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~ 42 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGA 42 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 35999999999999999999999999999988654
No 463
>PRK08223 hypothetical protein; Validated
Probab=87.11 E-value=0.9 Score=45.44 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=30.8
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~ 76 (572)
.+..|+|||+|-.|..+|..|++.|+. +.|+|.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 357899999999999999999999984 88888664
No 464
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=87.06 E-value=0.69 Score=44.59 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=29.0
Q ss_pred CEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 45 PVLIVG-AGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 45 dVlIVG-aGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
+|.||| +|..|.++|..|++.|.+|.+++|.+
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 599997 79999999999999999999998764
No 465
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=86.98 E-value=0.65 Score=48.95 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=29.8
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
+|.|||.|-.|+.+|..|+. |++|+++|+.+..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~k 34 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSR 34 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHH
Confidence 58999999999999999986 9999999998654
No 466
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=86.91 E-value=6.7 Score=39.86 Aligned_cols=36 Identities=19% Similarity=0.477 Sum_probs=32.9
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAFS 79 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~~ 79 (572)
-+|+|||||.+..=-|+.|++.+-+|.++=|++.++
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r 179 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR 179 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC
Confidence 399999999999999999999999999998887653
No 467
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=86.88 E-value=0.67 Score=50.61 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=31.2
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.|.|||+|.-|...|..|++.|++|+|+|+.+..
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~ 39 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEA 39 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 5999999999999999999999999999986543
No 468
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=86.84 E-value=4.9 Score=47.85 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=27.5
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKN 75 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~ 75 (572)
-+|+|||||.+|+=+|..+.+.|.+ |+++.++
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 5899999999999999999999986 6666654
No 469
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=86.84 E-value=0.68 Score=50.03 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=30.1
Q ss_pred CEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKL--GIKCSVLEKNKAF 78 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~~~ 78 (572)
+|.|||.|-+|+.+|..|+++ |++|+.+|.++..
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~ 38 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPR 38 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHH
Confidence 599999999999999999998 4789999987653
No 470
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=86.66 E-value=1.1 Score=46.98 Aligned_cols=40 Identities=18% Similarity=0.079 Sum_probs=35.0
Q ss_pred cCCCCccCCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 37 IVSNEAVVPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 37 ~~~~~~~~dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
..|+..+.+|+|.|| |-.|..++..|.+.|++|+.++|..
T Consensus 15 ~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 15 PYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 345566778999999 9999999999999999999999864
No 471
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=86.60 E-value=0.93 Score=47.42 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=31.2
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~ 76 (572)
.+..|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 35789999999999999999999998 688998764
No 472
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=86.40 E-value=0.84 Score=48.59 Aligned_cols=36 Identities=33% Similarity=0.450 Sum_probs=33.4
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
...|+|+|-|-+|+++|..|.+.|.+|++.|.++.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 457999999999999999999999999999988766
No 473
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=86.17 E-value=1 Score=42.34 Aligned_cols=32 Identities=25% Similarity=0.621 Sum_probs=29.3
Q ss_pred CCEEEECC-CHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 44 VPVLIVGA-GPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 44 ~dVlIVGa-GpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
..|+|+|| |.+|..+|..|++.|.+|.++.|+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999997 999999999999999999999875
No 474
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=85.93 E-value=0.69 Score=50.46 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=31.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.|.|||+|.-|...|..|++.|++|+++|+.++.
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~ 40 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEA 40 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 5999999999999999999999999999988664
No 475
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.93 E-value=1 Score=45.75 Aligned_cols=34 Identities=24% Similarity=0.485 Sum_probs=29.6
Q ss_pred CEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNKAF 78 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~~~ 78 (572)
+|.|||+|-+|.++|+.|...|+ +++|+|.....
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~ 36 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGV 36 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcch
Confidence 48999999999999999999887 59999986543
No 476
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=85.89 E-value=1.2 Score=42.29 Aligned_cols=34 Identities=29% Similarity=0.507 Sum_probs=30.9
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~ 76 (572)
+..|+|||+|-.|...|-.|++.|+. ++|+|.+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 57899999999999999999999996 88998764
No 477
>PTZ00117 malate dehydrogenase; Provisional
Probab=85.87 E-value=1.1 Score=46.01 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=31.5
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKAF 78 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~~ 78 (572)
..+|.|||||-.|.++|..|+..| .+++|+|.++..
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~ 41 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGV 41 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCcc
Confidence 358999999999999999999999 589999987654
No 478
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=85.79 E-value=0.84 Score=46.46 Aligned_cols=32 Identities=34% Similarity=0.648 Sum_probs=28.2
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
.|+|+|+|-.|...|..|++.|.+|+++=|.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 69999999999999999999997777776654
No 479
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=85.76 E-value=0.81 Score=51.26 Aligned_cols=35 Identities=34% Similarity=0.502 Sum_probs=32.3
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
+-.|+|+|.|..|-.+|..|.++|++++++|++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~ 434 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDIS 434 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHH
Confidence 45799999999999999999999999999998754
No 480
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=85.72 E-value=0.86 Score=46.40 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=29.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCC--CEEEEcCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGI--KCSVLEKNK 76 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi--~v~viEr~~ 76 (572)
.+|.|||+|..|.++|..|++.|+ +|.++++.+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 469999999999999999999995 788998764
No 481
>PLN02494 adenosylhomocysteinase
Probab=85.68 E-value=1 Score=48.14 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=31.4
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
-.|+|+|.|+.|..+|..|+..|.+|+++|+.+.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 4799999999999999999999999999998764
No 482
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=85.50 E-value=0.92 Score=41.20 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=27.1
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
-.|+|+|-|.+|-.+|..|+..|.+|.|.|.+|
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 369999999999999999999999999999876
No 483
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=85.38 E-value=1.3 Score=41.91 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=30.9
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~ 76 (572)
.+..|+|||+|..|...|..|++.|+. ++|+|.+.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 356899999999999999999999996 88998664
No 484
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.24 E-value=0.96 Score=49.05 Aligned_cols=34 Identities=18% Similarity=-0.069 Sum_probs=31.2
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
-.|+|+|.|-+|.++|.+|.+.|.+|++.|.++.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 3699999999999999999999999999997654
No 485
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=85.06 E-value=0.95 Score=45.60 Aligned_cols=33 Identities=21% Similarity=0.448 Sum_probs=30.8
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNK 76 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~ 76 (572)
..|+|+|+|..|.++|..|+..|.+|.+++|.+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 479999999999999999999999999999864
No 486
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=84.95 E-value=0.96 Score=47.20 Aligned_cols=34 Identities=29% Similarity=0.564 Sum_probs=31.3
Q ss_pred CCEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLG-IKCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~G-i~v~viEr~~~ 77 (572)
.+|+|+|||-+|.++|.-|++.| .+|+|.+|...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 37999999999999999999999 89999999854
No 487
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=84.93 E-value=0.77 Score=52.47 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=31.4
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.|.|||||.-|.-.|..+++.|++|+++|..++.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~ 348 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKA 348 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 6999999999999999999999999999987653
No 488
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=84.84 E-value=0.71 Score=44.89 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=25.4
Q ss_pred EEEECCCHHHHHHHHHHHhC--CCCEEEEcCCC
Q 008258 46 VLIVGAGPVGLVLSILLTKL--GIKCSVLEKNK 76 (572)
Q Consensus 46 VlIVGaGpaGL~~A~~La~~--Gi~v~viEr~~ 76 (572)
.+|||||+||.++|-.|+++ .-+++++-..+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 58999999999999999987 45677775543
No 489
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=84.64 E-value=0.82 Score=52.20 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=31.7
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKAF 78 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~~ 78 (572)
.|.|||||.-|.-.|..+++.|++|+++|..++.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~ 348 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHS 348 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 6999999999999999999999999999988654
No 490
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.50 E-value=1 Score=48.52 Aligned_cols=34 Identities=35% Similarity=0.611 Sum_probs=31.8
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
-.|+|||+|..|..+|..|.+.|++|+++|+++.
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~ 265 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE 265 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 5699999999999999999999999999998865
No 491
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=84.49 E-value=1.4 Score=44.52 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=29.7
Q ss_pred CCEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Q 008258 44 VPVLIVGAGPVGLVLSILLTKLGIK-CSVLEKNK 76 (572)
Q Consensus 44 ~dVlIVGaGpaGL~~A~~La~~Gi~-v~viEr~~ 76 (572)
..|+|+|||-+|.++|..|++.|.+ |.|+.|..
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4699999999999999999999997 99999864
No 492
>PLN02976 amine oxidase
Probab=84.49 E-value=1.1e+02 Score=37.77 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=29.7
Q ss_pred CCcEEEEecccccCCCCCCCCchhHHHHHHHHHHHHHHHhc
Q 008258 358 YNQIILAGDACHRFPPAGGFGMNTGVQDAHNLAWKIASVLK 398 (572)
Q Consensus 358 ~grV~LiGDAAH~~~P~~G~G~n~ai~DA~~La~~La~~~~ 398 (572)
.+||+++|+|.+...|.+-.| |++.+...|..|...+.
T Consensus 1150 ggRLFFAGEATS~~~pGTVHG---AIeSG~RAA~eIL~~L~ 1187 (1713)
T PLN02976 1150 ENCLFFAGEATCKEHPDTVGG---AMMSGLREAVRIIDILN 1187 (1713)
T ss_pred CCcEEEEehhhhCCCcchHHH---HHHHHHHHHHHHHHHHH
Confidence 367999999998877765555 78888888887777664
No 493
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=84.39 E-value=1 Score=50.69 Aligned_cols=35 Identities=31% Similarity=0.518 Sum_probs=32.5
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
+-+|+|+|.|..|-..|..|.+.|++++++|++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~ 434 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPD 434 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHH
Confidence 45899999999999999999999999999999864
No 494
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=84.34 E-value=1.3 Score=46.54 Aligned_cols=35 Identities=23% Similarity=0.487 Sum_probs=31.2
Q ss_pred ccCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Q 008258 42 AVVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNK 76 (572)
Q Consensus 42 ~~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~ 76 (572)
.+..|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 35689999999999999999999999 588998764
No 495
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=84.23 E-value=17 Score=37.96 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=39.5
Q ss_pred ccceEEeccEEEEEeeeCCe-EEEEEEeccCCceeeEEEEecEEEeecCCCh
Q 008258 187 QGREILMGHECVSVSATDQC-INVIASFLKEGKCTERNIQCNILIGTDGAGS 237 (572)
Q Consensus 187 ~~~~i~~g~~v~~v~~~~~~-v~v~~~~~~~g~~~~~~i~ad~vVgADG~~S 237 (572)
+.+.++-++++++++..++| +.+++... .+++.++++.|.||-|.|-+=
T Consensus 291 ~~v~l~~~~ev~~~~~~G~g~~~l~~~~~--~~~~~~t~~~D~vIlATGY~~ 340 (436)
T COG3486 291 PDVRLLSLSEVQSVEPAGDGRYRLTLRHH--ETGELETVETDAVILATGYRR 340 (436)
T ss_pred CCeeeccccceeeeecCCCceEEEEEeec--cCCCceEEEeeEEEEeccccc
Confidence 45688889999999998877 77777753 344677899999999999873
No 496
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.19 E-value=1.2 Score=48.46 Aligned_cols=31 Identities=35% Similarity=0.586 Sum_probs=29.4
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
.|+|+|.|.+|.++|.+|.+.|.+|.+.|+.
T Consensus 17 ~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 17 RVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 5999999999999999999999999999965
No 497
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=84.11 E-value=1.1 Score=45.09 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=30.1
Q ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Q 008258 45 PVLIVGAGPVGLVLSILLTKLGIKCSVLEKNKA 77 (572)
Q Consensus 45 dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~~~ 77 (572)
+|.|||.|..|..+|..|++.|++|.++++.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~ 33 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPE 33 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 488999999999999999999999999998753
No 498
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=84.08 E-value=1.4 Score=46.21 Aligned_cols=32 Identities=38% Similarity=0.693 Sum_probs=30.1
Q ss_pred CCEEEEC-CCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 44 VPVLIVG-AGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 44 ~dVlIVG-aGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
..|.||| .|.-|..+|..|+++|++|.++++.
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 5799999 8999999999999999999999985
No 499
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=84.06 E-value=1.5 Score=42.30 Aligned_cols=33 Identities=27% Similarity=0.441 Sum_probs=29.5
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGIKCSVLEKN 75 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi~v~viEr~ 75 (572)
...|+|||||.+++-=+..|.+.|-+|+||-..
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 457999999999999999999999999999643
No 500
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=84.00 E-value=1.3 Score=42.75 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=31.4
Q ss_pred cCCEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 008258 43 VVPVLIVGAGPVGLVLSILLTKLGI-KCSVLEKNKA 77 (572)
Q Consensus 43 ~~dVlIVGaGpaGL~~A~~La~~Gi-~v~viEr~~~ 77 (572)
...|+|||.|-+|..++-+|+|.|+ +.+|||...-
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v 65 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDV 65 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccc
Confidence 3579999999999999999999998 5999998754
Done!