Query 008260
Match_columns 572
No_of_seqs 521 out of 3209
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 21:32:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02153 epithiospecifier prot 100.0 1.3E-37 2.9E-42 322.9 33.2 258 171-457 7-293 (341)
2 KOG4441 Proteins containing BT 100.0 2.4E-38 5.2E-43 345.0 28.8 250 164-457 300-555 (571)
3 PLN02193 nitrile-specifier pro 100.0 1.6E-37 3.5E-42 334.3 34.0 256 171-457 151-419 (470)
4 KOG4693 Uncharacterized conser 100.0 4.6E-38 1E-42 293.3 20.8 264 172-456 3-284 (392)
5 PLN02153 epithiospecifier prot 100.0 7.2E-36 1.6E-40 309.9 33.4 259 166-448 51-339 (341)
6 KOG1230 Protein containing rep 100.0 1.2E-37 2.6E-42 306.4 18.0 313 122-463 1-355 (521)
7 PHA02713 hypothetical protein; 100.0 1.1E-36 2.4E-41 333.3 27.3 244 166-455 273-540 (557)
8 PLN02193 nitrile-specifier pro 100.0 1.1E-35 2.4E-40 320.1 34.1 255 166-449 194-469 (470)
9 KOG0379 Kelch repeat-containin 100.0 3.9E-35 8.4E-40 315.1 28.3 265 167-459 41-312 (482)
10 KOG4693 Uncharacterized conser 100.0 6.3E-35 1.4E-39 272.3 19.0 235 172-434 55-311 (392)
11 PHA03098 kelch-like protein; P 100.0 2.6E-33 5.6E-38 308.3 28.7 241 171-456 274-519 (534)
12 KOG4441 Proteins containing BT 100.0 1.3E-33 2.7E-38 308.0 25.8 232 183-456 273-507 (571)
13 TIGR03548 mutarot_permut cycli 100.0 4.9E-32 1.1E-36 279.2 26.3 222 172-435 52-313 (323)
14 TIGR03548 mutarot_permut cycli 100.0 3.1E-31 6.7E-36 273.2 28.9 237 184-456 2-287 (323)
15 PHA02790 Kelch-like protein; P 100.0 3E-31 6.5E-36 286.4 27.3 210 191-455 267-477 (480)
16 TIGR03547 muta_rot_YjhT mutatr 100.0 3.5E-31 7.5E-36 275.6 26.3 234 171-446 41-344 (346)
17 PRK14131 N-acetylneuraminic ac 100.0 7.8E-31 1.7E-35 275.4 25.7 241 171-453 62-373 (376)
18 TIGR03547 muta_rot_YjhT mutatr 100.0 3.8E-30 8.2E-35 267.8 27.2 236 181-458 3-308 (346)
19 PHA02713 hypothetical protein; 100.0 5.1E-30 1.1E-34 280.8 27.1 219 197-457 259-498 (557)
20 KOG0379 Kelch repeat-containin 100.0 6.1E-30 1.3E-34 275.0 26.3 255 171-449 98-358 (482)
21 KOG4152 Host cell transcriptio 100.0 8.8E-30 1.9E-34 256.0 18.3 256 171-455 17-309 (830)
22 KOG4152 Host cell transcriptio 100.0 2.4E-29 5.2E-34 252.9 20.7 250 171-446 67-356 (830)
23 PRK14131 N-acetylneuraminic ac 100.0 1.3E-28 2.8E-33 258.6 26.6 241 172-457 18-329 (376)
24 PHA03098 kelch-like protein; P 100.0 1.8E-28 3.8E-33 270.0 25.0 197 171-390 321-519 (534)
25 PTZ00458 acyl CoA binding prot 100.0 7.6E-30 1.7E-34 205.8 8.3 88 13-108 2-89 (90)
26 PHA02790 Kelch-like protein; P 100.0 1.6E-27 3.5E-32 257.4 24.3 188 165-390 287-478 (480)
27 cd00435 ACBP Acyl CoA binding 100.0 5.4E-29 1.2E-33 200.7 7.7 85 12-106 1-85 (85)
28 KOG1230 Protein containing rep 100.0 6.8E-28 1.5E-32 237.7 16.9 210 171-392 108-350 (521)
29 KOG0817 Acyl-CoA-binding prote 99.9 1.7E-27 3.7E-32 207.6 8.4 97 10-116 3-99 (142)
30 PF00887 ACBP: Acyl CoA bindin 99.9 1.1E-27 2.3E-32 196.2 4.6 87 12-106 1-87 (87)
31 COG4281 ACB Acyl-CoA-binding p 99.9 1.6E-25 3.5E-30 167.0 6.5 84 12-105 2-85 (87)
32 KOG2437 Muskelin [Signal trans 99.7 1.5E-17 3.3E-22 168.1 5.3 273 159-456 227-542 (723)
33 COG3055 Uncharacterized protei 99.7 3.9E-15 8.5E-20 146.3 19.3 238 171-446 70-372 (381)
34 COG3055 Uncharacterized protei 99.6 2.1E-13 4.5E-18 134.3 19.2 190 181-391 32-264 (381)
35 KOG2437 Muskelin [Signal trans 99.5 1.8E-14 3.9E-19 146.0 6.2 213 219-450 237-473 (723)
36 KOG3878 Protein involved in ma 99.1 9.7E-11 2.1E-15 113.1 6.0 96 8-110 28-126 (469)
37 PF13964 Kelch_6: Kelch motif 99.1 2.4E-10 5.1E-15 83.3 6.0 46 185-230 1-47 (50)
38 PF13964 Kelch_6: Kelch motif 99.1 4.2E-10 9.2E-15 81.9 6.4 50 296-348 1-50 (50)
39 PLN02772 guanylate kinase 99.0 3.4E-09 7.3E-14 108.8 11.8 90 293-384 21-110 (398)
40 PF01344 Kelch_1: Kelch motif; 98.9 4.4E-09 9.5E-14 75.4 5.5 45 185-229 1-46 (47)
41 PF13415 Kelch_3: Galactose ox 98.8 7.9E-09 1.7E-13 74.8 5.9 47 358-407 1-49 (49)
42 PLN02772 guanylate kinase 98.8 2.7E-08 5.8E-13 102.3 11.3 88 243-333 22-110 (398)
43 PF13415 Kelch_3: Galactose ox 98.8 1.2E-08 2.6E-13 73.9 5.9 48 306-356 1-49 (49)
44 PF01344 Kelch_1: Kelch motif; 98.8 1.2E-08 2.5E-13 73.2 5.6 45 245-289 1-45 (47)
45 PF07646 Kelch_2: Kelch motif; 98.8 1.3E-08 2.9E-13 73.7 5.9 45 185-229 1-48 (49)
46 PF07646 Kelch_2: Kelch motif; 98.8 1.8E-08 3.9E-13 72.9 6.3 46 296-341 1-48 (49)
47 PF13418 Kelch_4: Galactose ox 98.7 1.1E-08 2.5E-13 74.0 4.3 46 296-341 1-47 (49)
48 PF13418 Kelch_4: Galactose ox 98.7 2.9E-08 6.2E-13 71.9 4.3 44 245-288 1-45 (49)
49 PF13854 Kelch_5: Kelch motif 98.6 9.7E-08 2.1E-12 66.6 5.6 40 182-221 1-42 (42)
50 PF13854 Kelch_5: Kelch motif 98.5 2.4E-07 5.2E-12 64.6 5.5 41 293-333 1-42 (42)
51 smart00612 Kelch Kelch domain. 98.4 4.3E-07 9.2E-12 64.7 4.3 47 197-256 1-47 (47)
52 smart00612 Kelch Kelch domain. 98.3 7.2E-07 1.6E-11 63.5 4.9 46 360-408 1-46 (47)
53 PF03089 RAG2: Recombination a 98.3 6.6E-05 1.4E-09 72.6 18.3 165 257-437 40-231 (337)
54 PF07250 Glyoxal_oxid_N: Glyox 98.3 6.6E-05 1.4E-09 73.1 17.9 147 213-390 48-206 (243)
55 PF03089 RAG2: Recombination a 97.9 0.0028 6E-08 61.6 21.2 163 198-369 41-230 (337)
56 TIGR01640 F_box_assoc_1 F-box 97.7 0.016 3.5E-07 56.5 23.3 160 211-389 14-184 (230)
57 PF07250 Glyoxal_oxid_N: Glyox 97.7 0.0013 2.9E-08 64.1 15.0 86 274-368 48-138 (243)
58 TIGR01640 F_box_assoc_1 F-box 97.3 0.028 6.1E-07 54.8 19.1 153 210-384 69-230 (230)
59 PF07893 DUF1668: Protein of u 96.5 0.098 2.1E-06 54.3 16.3 118 254-389 75-214 (342)
60 PF13360 PQQ_2: PQQ-like domai 96.0 1.6 3.4E-05 42.2 26.4 152 191-388 32-199 (238)
61 PF07893 DUF1668: Protein of u 95.7 0.27 6E-06 51.0 14.9 120 193-340 74-216 (342)
62 PF08450 SGL: SMP-30/Gluconola 95.5 2.4 5.2E-05 41.5 20.3 196 195-450 11-215 (246)
63 PRK11138 outer membrane biogen 95.5 4 8.7E-05 43.1 24.6 189 188-450 113-314 (394)
64 smart00295 B41 Band 4.1 homolo 95.4 0.024 5.1E-07 54.1 5.4 80 16-106 103-203 (207)
65 PF12768 Rax2: Cortical protei 95.3 0.68 1.5E-05 46.4 15.4 122 311-455 2-128 (281)
66 PF08450 SGL: SMP-30/Gluconola 95.2 3.1 6.7E-05 40.7 19.9 181 189-407 43-232 (246)
67 PF12768 Rax2: Cortical protei 95.2 0.27 5.8E-06 49.3 12.0 124 260-391 2-130 (281)
68 PRK11138 outer membrane biogen 95.2 5.1 0.00011 42.3 23.2 177 172-388 47-231 (394)
69 TIGR02800 propeller_TolB tol-p 95.0 5.1 0.00011 42.5 22.2 149 211-390 214-362 (417)
70 PF02191 OLF: Olfactomedin-lik 94.7 4.9 0.00011 39.7 19.5 185 195-409 30-228 (250)
71 TIGR03866 PQQ_ABC_repeats PQQ- 94.7 4.9 0.00011 39.7 22.3 144 197-386 2-149 (300)
72 KOG2055 WD40 repeat protein [G 94.7 1.8 3.9E-05 45.3 16.4 153 196-386 225-378 (514)
73 PF00373 FERM_M: FERM central 94.4 0.055 1.2E-06 47.1 4.5 82 14-106 13-122 (126)
74 PF02191 OLF: Olfactomedin-lik 94.0 6.1 0.00013 39.0 18.3 166 255-458 30-213 (250)
75 cd00094 HX Hemopexin-like repe 93.8 6.1 0.00013 37.3 17.9 155 190-385 11-178 (194)
76 PF13360 PQQ_2: PQQ-like domai 93.5 7.4 0.00016 37.4 18.6 149 191-385 72-233 (238)
77 cd00216 PQQ_DH Dehydrogenases 93.4 14 0.00031 40.3 24.8 130 187-338 53-192 (488)
78 PRK13684 Ycf48-like protein; P 93.3 11 0.00025 38.8 20.0 190 171-409 119-313 (334)
79 KOG0310 Conserved WD40 repeat- 92.9 4.9 0.00011 42.3 15.9 147 195-384 79-227 (487)
80 TIGR03300 assembly_YfgL outer 92.8 14 0.0003 38.6 23.1 152 191-388 141-305 (377)
81 cd00094 HX Hemopexin-like repe 92.1 11 0.00023 35.6 17.9 152 251-451 12-178 (194)
82 PRK04792 tolB translocation pr 91.9 21 0.00045 38.5 23.4 104 272-390 242-346 (448)
83 PRK05137 tolB translocation pr 91.8 21 0.00045 38.3 22.7 147 211-389 226-373 (435)
84 PF12217 End_beta_propel: Cata 91.7 14 0.0003 36.1 16.8 169 185-367 135-333 (367)
85 TIGR02800 propeller_TolB tol-p 91.6 21 0.00045 37.8 22.1 145 272-453 214-359 (417)
86 PRK04792 tolB translocation pr 91.3 24 0.00052 38.1 23.4 146 211-390 242-390 (448)
87 TIGR03300 assembly_YfgL outer 91.0 22 0.00048 37.1 24.8 150 189-388 59-216 (377)
88 PRK04922 tolB translocation pr 90.9 26 0.00056 37.6 22.0 145 211-390 228-376 (433)
89 PF05096 Glu_cyclase_2: Glutam 90.5 12 0.00025 37.1 15.0 112 250-386 49-161 (264)
90 PRK13684 Ycf48-like protein; P 90.4 24 0.00052 36.5 19.8 172 171-390 76-252 (334)
91 PF09910 DUF2139: Uncharacteri 90.4 21 0.00045 35.8 18.3 127 187-335 38-185 (339)
92 smart00284 OLF Olfactomedin-li 90.3 20 0.00043 35.4 19.6 199 169-409 19-233 (255)
93 PRK04922 tolB translocation pr 90.3 29 0.00062 37.2 22.0 106 271-390 227-332 (433)
94 PRK00178 tolB translocation pr 90.2 20 0.00044 38.2 18.4 144 211-390 223-371 (430)
95 PF12217 End_beta_propel: Cata 89.9 21 0.00045 35.0 22.0 223 189-435 78-334 (367)
96 PRK11028 6-phosphogluconolacto 89.5 27 0.00058 35.7 22.2 158 195-389 46-214 (330)
97 smart00284 OLF Olfactomedin-li 89.2 24 0.00052 34.8 19.8 167 255-453 34-213 (255)
98 KOG2055 WD40 repeat protein [G 88.7 6.8 0.00015 41.1 12.2 151 255-450 224-376 (514)
99 PF05096 Glu_cyclase_2: Glutam 88.6 9.5 0.00021 37.7 12.8 158 190-389 49-210 (264)
100 PRK00178 tolB translocation pr 87.7 42 0.00091 35.8 22.3 102 272-390 223-327 (430)
101 PF08268 FBA_3: F-box associat 87.7 7.6 0.00016 33.9 10.7 87 192-289 2-89 (129)
102 PLN00033 photosystem II stabil 87.1 44 0.00096 35.4 21.5 185 171-391 166-365 (398)
103 PF08268 FBA_3: F-box associat 87.0 6.9 0.00015 34.1 10.1 87 252-340 2-89 (129)
104 KOG0310 Conserved WD40 repeat- 86.8 15 0.00032 38.9 13.4 113 253-388 77-191 (487)
105 PRK03629 tolB translocation pr 86.7 49 0.0011 35.4 22.0 146 211-390 223-371 (429)
106 PRK04043 tolB translocation pr 86.4 50 0.0011 35.3 22.3 148 211-391 213-366 (419)
107 cd00200 WD40 WD40 domain, foun 86.0 32 0.00069 32.7 22.2 105 255-384 62-167 (289)
108 PRK02889 tolB translocation pr 84.2 63 0.0014 34.5 21.8 145 211-390 220-368 (427)
109 cd00200 WD40 WD40 domain, foun 84.0 39 0.00085 32.0 21.6 105 256-386 105-211 (289)
110 KOG2321 WD40 repeat protein [G 83.2 18 0.00038 39.3 12.2 77 346-452 132-209 (703)
111 TIGR03075 PQQ_enz_alc_DH PQQ-d 82.2 87 0.0019 34.6 24.1 129 189-338 63-198 (527)
112 KOG2321 WD40 repeat protein [G 82.1 73 0.0016 34.8 16.2 76 294-385 131-208 (703)
113 PRK11028 6-phosphogluconolacto 81.1 67 0.0015 32.7 20.8 146 197-383 3-157 (330)
114 TIGR03866 PQQ_ABC_repeats PQQ- 80.9 58 0.0013 31.8 23.7 146 196-386 43-191 (300)
115 PRK02889 tolB translocation pr 80.9 83 0.0018 33.6 20.7 102 272-390 220-324 (427)
116 PRK05137 tolB translocation pr 80.6 85 0.0019 33.6 22.4 105 272-390 226-330 (435)
117 PF03178 CPSF_A: CPSF A subuni 80.3 68 0.0015 32.7 15.6 135 196-365 42-190 (321)
118 PRK03629 tolB translocation pr 79.8 91 0.002 33.4 23.2 105 272-390 223-327 (429)
119 PF02897 Peptidase_S9_N: Proly 79.6 88 0.0019 33.1 17.1 147 210-390 251-412 (414)
120 PF13088 BNR_2: BNR repeat-lik 79.1 68 0.0015 31.5 17.9 208 171-390 30-250 (275)
121 PLN02919 haloacid dehalogenase 78.7 1.6E+02 0.0035 35.6 27.9 181 189-391 627-842 (1057)
122 KOG0649 WD40 repeat protein [G 78.6 68 0.0015 31.3 15.3 112 254-389 125-242 (325)
123 KOG3530 FERM domain protein EH 77.0 2.8 6.2E-05 45.3 4.1 66 36-101 118-195 (616)
124 PF10282 Lactonase: Lactonase, 76.3 99 0.0021 31.9 18.5 167 187-390 145-332 (345)
125 TIGR03075 PQQ_enz_alc_DH PQQ-d 76.2 1.3E+02 0.0028 33.2 22.5 122 251-389 65-198 (527)
126 PLN02919 haloacid dehalogenase 76.1 1.9E+02 0.0041 35.0 22.4 169 195-385 694-891 (1057)
127 KOG0646 WD40 repeat protein [G 75.7 62 0.0013 34.3 13.1 144 189-369 85-239 (476)
128 PTZ00421 coronin; Provisional 75.6 1.3E+02 0.0028 32.9 17.3 108 255-385 87-201 (493)
129 PLN00181 protein SPA1-RELATED; 75.0 1.7E+02 0.0037 34.1 20.3 99 255-383 587-691 (793)
130 KOG1036 Mitotic spindle checkp 74.5 1E+02 0.0022 31.1 14.6 130 254-413 63-203 (323)
131 PF10282 Lactonase: Lactonase, 72.8 1.2E+02 0.0026 31.3 22.5 203 195-448 48-275 (345)
132 PLN00033 photosystem II stabil 72.5 1.4E+02 0.003 31.8 21.6 161 171-367 120-300 (398)
133 PF02897 Peptidase_S9_N: Proly 72.2 1.4E+02 0.0029 31.6 16.6 165 195-388 134-318 (414)
134 PLN00181 protein SPA1-RELATED; 69.7 1.8E+02 0.0038 34.0 17.1 103 307-450 545-650 (793)
135 KOG2048 WD40 repeat protein [G 69.6 1.9E+02 0.0041 32.3 20.4 87 292-390 423-513 (691)
136 PRK01742 tolB translocation pr 68.8 1.7E+02 0.0036 31.3 19.0 138 211-390 228-369 (429)
137 PF02239 Cytochrom_D1: Cytochr 68.4 1.4E+02 0.003 31.3 14.4 167 195-399 48-219 (369)
138 COG4257 Vgb Streptogramin lyas 68.2 1.3E+02 0.0029 30.0 16.4 187 212-460 84-274 (353)
139 PTZ00420 coronin; Provisional 66.8 2.2E+02 0.0047 31.8 17.0 61 308-385 139-200 (568)
140 PF14870 PSII_BNR: Photosynthe 66.7 1.5E+02 0.0033 30.1 23.3 218 171-457 47-270 (302)
141 cd00216 PQQ_DH Dehydrogenases 66.1 2E+02 0.0044 31.3 25.6 37 189-226 150-192 (488)
142 KOG0281 Beta-TrCP (transducin 62.3 79 0.0017 32.3 10.3 87 324-448 341-428 (499)
143 PF03178 CPSF_A: CPSF A subuni 60.1 1.2E+02 0.0025 30.9 11.9 95 189-311 92-188 (321)
144 PTZ00421 coronin; Provisional 57.6 2.9E+02 0.0063 30.2 23.3 63 256-334 138-201 (493)
145 KOG3545 Olfactomedin and relat 55.6 2.1E+02 0.0046 28.0 14.0 205 172-431 21-235 (249)
146 KOG0289 mRNA splicing factor [ 53.4 3E+02 0.0066 29.2 14.4 121 247-391 349-471 (506)
147 TIGR03074 PQQ_membr_DH membran 53.3 4.2E+02 0.0092 30.8 25.7 34 188-227 187-222 (764)
148 COG4257 Vgb Streptogramin lyas 50.3 2.8E+02 0.006 27.8 15.9 186 212-458 125-315 (353)
149 KOG0266 WD40 repeat-containing 48.3 3.7E+02 0.008 29.0 13.9 106 306-451 214-321 (456)
150 PLN03215 ascorbic acid mannose 47.9 3.5E+02 0.0077 28.4 14.6 100 220-342 189-305 (373)
151 PRK04043 tolB translocation pr 47.7 3.8E+02 0.0082 28.6 19.2 150 211-390 257-408 (419)
152 PF14870 PSII_BNR: Photosynthe 47.2 3.2E+02 0.007 27.7 22.3 189 170-409 5-197 (302)
153 COG0823 TolB Periplasmic compo 47.0 3.9E+02 0.0085 28.6 13.8 149 211-391 218-368 (425)
154 PRK01742 tolB translocation pr 46.6 3.9E+02 0.0084 28.4 20.9 100 272-388 228-330 (429)
155 COG4946 Uncharacterized protei 46.3 4.1E+02 0.0089 28.6 16.0 209 209-457 57-304 (668)
156 KOG1036 Mitotic spindle checkp 44.1 3.6E+02 0.0077 27.3 14.3 130 273-451 36-166 (323)
157 PF14583 Pectate_lyase22: Olig 42.6 4.3E+02 0.0093 27.8 13.2 183 195-408 46-248 (386)
158 PF15525 DUF4652: Domain of un 42.4 1.9E+02 0.0041 27.1 8.7 73 315-390 80-156 (200)
159 KOG0316 Conserved WD40 repeat- 36.9 3E+02 0.0066 26.9 9.4 104 254-387 69-178 (307)
160 PF06433 Me-amine-dh_H: Methyl 36.7 5E+02 0.011 26.9 14.6 117 196-337 3-132 (342)
161 KOG0266 WD40 repeat-containing 36.0 5.8E+02 0.013 27.4 23.0 64 255-335 257-322 (456)
162 PF13088 BNR_2: BNR repeat-lik 35.5 4.3E+02 0.0093 25.7 13.6 155 191-363 114-275 (275)
163 COG1520 FOG: WD40-like repeat 34.7 5.4E+02 0.012 26.6 19.0 153 192-388 65-225 (370)
164 PLN03215 ascorbic acid mannose 33.4 5.9E+02 0.013 26.7 15.7 102 170-291 189-305 (373)
165 KOG0649 WD40 repeat protein [G 32.9 4.9E+02 0.011 25.6 16.6 112 195-339 126-243 (325)
166 KOG3881 Uncharacterized conser 31.7 6.3E+02 0.014 26.5 12.6 156 196-384 161-322 (412)
167 PTZ00420 coronin; Provisional 31.2 7.9E+02 0.017 27.5 19.0 115 255-389 178-300 (568)
168 KOG0318 WD40 repeat stress pro 30.3 4E+02 0.0086 29.1 9.9 107 306-449 454-561 (603)
169 KOG0293 WD40 repeat-containing 30.1 6.9E+02 0.015 26.5 15.0 105 255-389 323-430 (519)
170 KOG0308 Conserved WD40 repeat- 29.8 6.8E+02 0.015 28.1 11.7 68 306-385 129-204 (735)
171 KOG0291 WD40-repeat-containing 29.6 9.1E+02 0.02 27.8 18.2 110 254-388 360-472 (893)
172 KOG0772 Uncharacterized conser 29.1 5.8E+02 0.013 27.8 10.8 122 244-385 315-448 (641)
173 TIGR03074 PQQ_membr_DH membran 27.8 9.5E+02 0.021 28.0 13.4 32 250-288 189-222 (764)
174 PF15525 DUF4652: Domain of un 27.3 5.3E+02 0.011 24.3 11.4 76 264-341 80-158 (200)
175 TIGR02658 TTQ_MADH_Hv methylam 26.6 7.5E+02 0.016 25.8 24.3 77 353-452 253-334 (352)
176 COG1520 FOG: WD40-like repeat 26.5 7.3E+02 0.016 25.6 20.4 110 195-338 111-226 (370)
177 PF13570 PQQ_3: PQQ-like domai 26.3 1.6E+02 0.0035 19.4 4.4 26 189-220 15-40 (40)
178 PF06433 Me-amine-dh_H: Methyl 25.1 1.9E+02 0.0042 29.8 6.5 73 306-388 249-326 (342)
179 PF14583 Pectate_lyase22: Olig 24.9 8.4E+02 0.018 25.8 12.1 136 209-368 166-303 (386)
180 KOG0289 mRNA splicing factor [ 24.3 8.9E+02 0.019 25.9 13.9 94 255-366 399-494 (506)
181 PF09910 DUF2139: Uncharacteri 24.1 7.7E+02 0.017 25.1 15.0 97 195-312 117-219 (339)
182 TIGR02658 TTQ_MADH_Hv methylam 23.4 8.6E+02 0.019 25.3 26.2 121 195-337 12-142 (352)
183 KOG0263 Transcription initiati 22.1 8.1E+02 0.018 27.9 10.9 111 301-449 540-650 (707)
184 KOG0305 Anaphase promoting com 21.3 1.1E+03 0.024 25.8 11.9 99 251-368 351-452 (484)
185 KOG4378 Nuclear protein COP1 [ 20.9 1.1E+03 0.024 25.7 14.0 53 324-387 188-244 (673)
186 PRK02888 nitrous-oxide reducta 20.6 1.3E+03 0.027 26.2 17.8 136 269-450 212-353 (635)
187 KOG4378 Nuclear protein COP1 [ 20.5 7.8E+02 0.017 26.8 9.8 71 296-382 210-280 (673)
No 1
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.3e-37 Score=322.93 Aligned_cols=258 Identities=22% Similarity=0.369 Sum_probs=213.3
Q ss_pred ceEEecccC-CCCCCCCcceeEEEECCEEEEEccCCC--CcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCC-CC
Q 008260 171 DQWIAPPIS-GQRPKARYEHGAAVVQDKMYIYGGNHN--GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLT-PC 246 (572)
Q Consensus 171 ~~W~~~~~~-g~~p~~R~~~s~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~-~R 246 (572)
+.|..+... +.+|.+|.+|++++++++|||+||... ....+++++||+.+++|+.++++. ..|. .+
T Consensus 7 ~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~----------~~p~~~~ 76 (341)
T PLN02153 7 GGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANG----------DVPRISC 76 (341)
T ss_pred CeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccC----------CCCCCcc
Confidence 579988764 457999999999999999999999743 345689999999999999987653 1122 34
Q ss_pred cceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCC--CCCCCCcceEEEEECCEEEEEecCCCCC-----
Q 008260 247 AGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYG--KPPVSRGGQSVTLVGTSLVIFGGEDAKR----- 319 (572)
Q Consensus 247 ~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g--~~p~~R~~~~~~~~~~~iyv~GG~~~~~----- 319 (572)
.+|++++++++||+|||.... ..++++++||+.+++|+.++... ..|.+|..|++++++++||||||.+...
T Consensus 77 ~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~ 155 (341)
T PLN02153 77 LGVRMVAVGTKLYIFGGRDEK-REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTP 155 (341)
T ss_pred CceEEEEECCEEEEECCCCCC-CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCC
Confidence 589999999999999998765 55789999999999999987431 2388999999999999999999986432
Q ss_pred CCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCC--------CcCcCcEEEEECCCCcEEeecc
Q 008260 320 SLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH--------AACFNDLHVLDLQTMEWSRPTQ 391 (572)
Q Consensus 320 ~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~--------~~~~~~v~~yd~~t~~W~~v~~ 391 (572)
..++++++||+.+++|+.++.++.+|.+|.+|+++++++ +|||+||.+. ...++++++||+.+++|+++..
T Consensus 156 ~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 156 ERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQG-KIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVET 234 (341)
T ss_pred cccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECC-eEEEEeccccccccCCccceecCceEEEEcCCCcEEeccc
Confidence 135789999999999999988766678999999988855 6999998642 1235789999999999999987
Q ss_pred CCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCC----------CCccCcEEEEeCCCCccccccc
Q 008260 392 QGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN----------GRYNNEVHVLKPSHKSTLSSKM 457 (572)
Q Consensus 392 ~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~----------~~~~~dv~~yd~~~~~~~~~~~ 457 (572)
.+.+|.+|..|+++++++ +||||||.. +...+++|+||+.+++|.....
T Consensus 235 ~g~~P~~r~~~~~~~~~~-----------------~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 235 TGAKPSARSVFAHAVVGK-----------------YIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred cCCCCCCcceeeeEEECC-----------------EEEEECcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 777899999999999987 899999973 2356899999999999986543
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.4e-38 Score=345.03 Aligned_cols=250 Identities=26% Similarity=0.460 Sum_probs=229.5
Q ss_pred Cceeeec----ceEEecccCCCCCCCCcceeEEEECCEEEEEccCC-CCcccCcEEEEEcCCCcEEEeeecccccCCCCC
Q 008260 164 LGSVVVY----DQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNH-NGRYLSDMHILDLRSWAWSKIQAKAVAESTESP 238 (572)
Q Consensus 164 ~~~~~~~----~~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~ 238 (572)
.+.++.| ++|..+.+ +|.+|..+++++++++||++||.+ +...++++++||+.+++|..+++|.
T Consensus 300 ~~~ve~yd~~~~~w~~~a~---m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~-------- 368 (571)
T KOG4441|consen 300 LRSVECYDPKTNEWSSLAP---MPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN-------- 368 (571)
T ss_pred cceeEEecCCcCcEeecCC---CCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCcc--------
Confidence 4556666 47999985 899999999999999999999988 6788999999999999999999885
Q ss_pred CCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCC
Q 008260 239 SPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAK 318 (572)
Q Consensus 239 ~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~ 318 (572)
.+|.+++++++++.||++||.++. ..++++++|||.+++|+.++ +|+.+|++|++++++++||++||.++.
T Consensus 369 -----~~R~~~~v~~l~g~iYavGG~dg~-~~l~svE~YDp~~~~W~~va---~m~~~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 369 -----TKRSDFGVAVLDGKLYAVGGFDGE-KSLNSVECYDPVTNKWTPVA---PMLTRRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred -----CccccceeEEECCEEEEEeccccc-cccccEEEecCCCCcccccC---CCCcceeeeEEEEECCEEEEEcCcCCC
Confidence 999999999999999999999966 88899999999999999998 688899999999999999999999888
Q ss_pred CCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCC
Q 008260 319 RSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTP 398 (572)
Q Consensus 319 ~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~ 398 (572)
...++.+++|||.+++|+.++++ +.+|.+++++++++ +||++||+++...+..+++||+++++|+.+. .|+.+
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M---~~~R~~~g~a~~~~-~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~---~m~~~ 512 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPM---NTRRSGFGVAVLNG-KIYVVGGFDGTSALSSVERYDPETNQWTMVA---PMTSP 512 (571)
T ss_pred ccccceEEEEcCCCCceeecCCc---ccccccceEEEECC-EEEEECCccCCCccceEEEEcCCCCceeEcc---cCccc
Confidence 76799999999999999999988 89999999999965 6999999988777888999999999999995 58999
Q ss_pred ccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCC-ccCcEEEEeCCCCccccccc
Q 008260 399 RAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR-YNNEVHVLKPSHKSTLSSKM 457 (572)
Q Consensus 399 R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~-~~~dv~~yd~~~~~~~~~~~ 457 (572)
|..++++++++ +||++||+++. +++.|++|||.+++|.....
T Consensus 513 rs~~g~~~~~~-----------------~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 513 RSAVGVVVLGG-----------------KLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred cccccEEEECC-----------------EEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 99999999987 89999999884 89999999999999987655
No 3
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.6e-37 Score=334.30 Aligned_cols=256 Identities=22% Similarity=0.360 Sum_probs=219.8
Q ss_pred ceEEecccCCCCCCCCcceeEEEECCEEEEEccCCC--CcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCC-CCc
Q 008260 171 DQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHN--GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLT-PCA 247 (572)
Q Consensus 171 ~~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~-~R~ 247 (572)
++|..+.+.+.+|.+|.+|++++++++|||+||... ....+++|+||+.+++|+.++.+. ..|. +|.
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g----------~~P~~~~~ 220 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATG----------DVPHLSCL 220 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCC----------CCCCCccc
Confidence 699999887788999999999999999999999753 234578999999999999876542 1233 467
Q ss_pred ceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEE
Q 008260 248 GHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHI 327 (572)
Q Consensus 248 ~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 327 (572)
+|+++.++++||||||.... ..++++++||+.+++|+++++.+..|.+|..|++++++++||||||.+... .++++++
T Consensus 221 ~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~~~~~~~ 298 (470)
T PLN02193 221 GVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA-RLKTLDS 298 (470)
T ss_pred ceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-CcceEEE
Confidence 99999999999999998765 567899999999999999986655689999999999999999999997654 4789999
Q ss_pred EECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEE
Q 008260 328 LDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTI 407 (572)
Q Consensus 328 yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~ 407 (572)
||+.+++|+.++..+.+|.+|..|+++++++ +|||+||.++. .++++++||+.+++|+.+...+..|.+|..|+++++
T Consensus 299 yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~g-kiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~ 376 (470)
T PLN02193 299 YNIVDKKWFHCSTPGDSFSIRGGAGLEVVQG-KVWVVYGFNGC-EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV 376 (470)
T ss_pred EECCCCEEEeCCCCCCCCCCCCCcEEEEECC-cEEEEECCCCC-ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE
Confidence 9999999999987666788999999998855 59999997653 468999999999999999877778999999999999
Q ss_pred CCccccceeeeeeccCCCCEEEEEcCCCC----------CccCcEEEEeCCCCccccccc
Q 008260 408 GENWFLGLSLVVSSYSGEDVIVAFGGYNG----------RYNNEVHVLKPSHKSTLSSKM 457 (572)
Q Consensus 408 ~~~~~iG~s~~~~~~~g~~~l~v~GG~~~----------~~~~dv~~yd~~~~~~~~~~~ 457 (572)
++ +||||||++. ..++++|+||+.+++|.....
T Consensus 377 ~~-----------------~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 377 GK-----------------HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred CC-----------------EEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 77 8999999752 256899999999999986653
No 4
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=4.6e-38 Score=293.26 Aligned_cols=264 Identities=29% Similarity=0.514 Sum_probs=230.3
Q ss_pred eEEecccCCCCCCCCcceeEEEECCEEEEEccCCCCc-----ccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCC
Q 008260 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGR-----YLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPC 246 (572)
Q Consensus 172 ~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~~~~-----~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R 246 (572)
.|+..-.. -+.|..|+++.++.+||-|||+..+. ..-|+++++..+.+|.++++...-....++.|..|..|
T Consensus 3 ~WTVHLeG---GPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqR 79 (392)
T KOG4693|consen 3 TWTVHLEG---GPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQR 79 (392)
T ss_pred eEEEEecC---CcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhh
Confidence 57754432 24689999999999999999965432 23489999999999999988654445566677889999
Q ss_pred cceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCC-CCCCCCce
Q 008260 247 AGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDA-KRSLLNDL 325 (572)
Q Consensus 247 ~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~-~~~~~~~v 325 (572)
++|+++.+++++|+.||.+++....+.++.||+++++|.+....|-.|.+|.+|+++++++.+|||||+.. ..++.+|+
T Consensus 80 YGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~ 159 (392)
T KOG4693|consen 80 YGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDT 159 (392)
T ss_pred cCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccc
Confidence 99999999999999999999888899999999999999999999999999999999999999999999954 34578999
Q ss_pred EEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCC---------CcCcCcEEEEECCCCcEEeeccCCCCC
Q 008260 326 HILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH---------AACFNDLHVLDLQTMEWSRPTQQGEIP 396 (572)
Q Consensus 326 ~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~---------~~~~~~v~~yd~~t~~W~~v~~~g~~p 396 (572)
+++|+.|.+|+.+...|.+|.-|.+|++++++ +.+|||||.+. ..+-+.+..+|++|..|.+.+..+..|
T Consensus 160 h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~-~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P 238 (392)
T KOG4693|consen 160 HVLDFATMTWREMHTKGDPPRWRDFHTASVID-GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKP 238 (392)
T ss_pred eeEeccceeeeehhccCCCchhhhhhhhhhcc-ceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCC
Confidence 99999999999999999999999999999996 56999999643 244567899999999999998888889
Q ss_pred CCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCC---ccCcEEEEeCCCCcccccc
Q 008260 397 TPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR---YNNEVHVLKPSHKSTLSSK 456 (572)
Q Consensus 397 ~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~---~~~dv~~yd~~~~~~~~~~ 456 (572)
..|..|++.+.++ .||+||||++. .++|+|+|||.+..|....
T Consensus 239 ~GRRSHS~fvYng-----------------~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~ 284 (392)
T KOG4693|consen 239 GGRRSHSTFVYNG-----------------KMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVIS 284 (392)
T ss_pred CcccccceEEEcc-----------------eEEEecccchhhhhhhcceeecccccchheeee
Confidence 9999999999987 89999999984 7899999999999887654
No 5
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=7.2e-36 Score=309.93 Aligned_cols=259 Identities=22% Similarity=0.386 Sum_probs=207.4
Q ss_pred eeeec----ceEEecccCCCCCCC-CcceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCC
Q 008260 166 SVVVY----DQWIAPPISGQRPKA-RYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSP 240 (572)
Q Consensus 166 ~~~~~----~~W~~~~~~g~~p~~-R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~ 240 (572)
.+++| ++|+.+++.+..|.. +.+|++++++++||||||......++++++||+.+++|+.++.+. ..
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~--------~~ 122 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLD--------EE 122 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCC--------CC
Confidence 45555 589998876544543 458999999999999999877777899999999999999987653 12
Q ss_pred CCCCCCcceeEEEeCCEEEEEeccCCCC-----CcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecC
Q 008260 241 ALLTPCAGHSLIPWENKLLSIAGHTKDP-----SEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGE 315 (572)
Q Consensus 241 ~~p~~R~~hs~~~~~~~iyv~GG~~~~~-----~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~ 315 (572)
..|.+|.+|+++.++++|||+||..... ..++++++||+.+++|+.++..+.+|.+|.+|++++++++|||+||.
T Consensus 123 ~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 202 (341)
T PLN02153 123 GGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGF 202 (341)
T ss_pred CCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEecc
Confidence 2378999999999999999999986431 24578999999999999998766667899999999999999999997
Q ss_pred CCC-------CCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCC---------CCcCcCcEEEE
Q 008260 316 DAK-------RSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS---------HAACFNDLHVL 379 (572)
Q Consensus 316 ~~~-------~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~---------~~~~~~~v~~y 379 (572)
+.. ...++++++||+.+++|+.+...+..|.+|..|++++++ ++||||||.. .....+++|+|
T Consensus 203 ~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~ 281 (341)
T PLN02153 203 ATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVG-KYIIIFGGEVWPDLKGHLGPGTLSNEGYAL 281 (341)
T ss_pred ccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEEC-CEEEEECcccCCccccccccccccccEEEE
Confidence 521 123688999999999999998877779999999999885 5799999963 23456799999
Q ss_pred ECCCCcEEeeccCCC--CCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCC--CccCcEEEEeCC
Q 008260 380 DLQTMEWSRPTQQGE--IPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNG--RYNNEVHVLKPS 448 (572)
Q Consensus 380 d~~t~~W~~v~~~g~--~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~--~~~~dv~~yd~~ 448 (572)
|+.+++|+.+...+. +|..|..++++.+.+ +++||||||+++ ..++|+|+|+..
T Consensus 282 d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~---------------~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 282 DTETLVWEKLGECGEPAMPRGWTAYTTATVYG---------------KNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred EcCccEEEeccCCCCCCCCCccccccccccCC---------------cceEEEEcCcCCCCccccceEEEecc
Confidence 999999999865433 444455455555443 448999999965 478999999864
No 6
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=1.2e-37 Score=306.35 Aligned_cols=313 Identities=22% Similarity=0.390 Sum_probs=242.4
Q ss_pred CCCCchhHH---HHhCCCCCCCcccccccCCCccccccccceecCCceeeecceEEecccCCCCCCCCcceeEEEEC--C
Q 008260 122 MNHDSKTEA---VKENGNSFPETKTISTENGNLMETQDKDVVSEGLGSVVVYDQWIAPPISGQRPKARYEHGAAVVQ--D 196 (572)
Q Consensus 122 ~~~k~k~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~g~~p~~R~~~s~~~~~--~ 196 (572)
|+||.|+++ .+++..++.+.+.+.+. ..+.+..|...+...++..+.-..=......-.+|.||.++++++.. +
T Consensus 1 MgKK~Kk~kkgk~aek~a~K~dkK~akr~-kkl~~e~de~~i~~~iq~~eaK~~e~~~e~~~~~PspRsn~sl~~nPeke 79 (521)
T KOG1230|consen 1 MGKKNKKDKKGKGAEKTAAKQDKKFAKRK-KKLNEELDEADIAEIIQSLEAKQIEHVVETSVPPPSPRSNPSLFANPEKE 79 (521)
T ss_pred CCccccCcccccchhhhHHHHHHHHHhhh-hhcCcccchHHHHHHHHhhhhhccceeeeccCCCCCCCCCcceeeccCcc
Confidence 455544433 22333333344444333 44444444555555555544433111111112478999999988873 6
Q ss_pred EEEEEccCC-CC---cccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeC-CEEEEEeccCCCCC--
Q 008260 197 KMYIYGGNH-NG---RYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWE-NKLLSIAGHTKDPS-- 269 (572)
Q Consensus 197 ~lyv~GG~~-~~---~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~-~~iyv~GG~~~~~~-- 269 (572)
.|++|||.. ++ ..+||+|+||..+++|+++... +.|+||++|.++++. +.+|+|||....++
T Consensus 80 ELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp-----------n~P~pRsshq~va~~s~~l~~fGGEfaSPnq~ 148 (521)
T KOG1230|consen 80 ELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP-----------NAPPPRSSHQAVAVPSNILWLFGGEFASPNQE 148 (521)
T ss_pred eeEEecceeecceeEEEeeeeeEEeccccceeEeccC-----------CCcCCCccceeEEeccCeEEEeccccCCcchh
Confidence 899999943 23 3579999999999999998753 468999999999985 89999999876643
Q ss_pred ---cceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCC---CCCCCceEEEECCCCcEEEeeCCCC
Q 008260 270 ---EIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAK---RSLLNDLHILDLETMTWDEIDAVGV 343 (572)
Q Consensus 270 ---~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~---~~~~~~v~~yd~~t~~W~~v~~~g~ 343 (572)
...++|.||+.+++|+++...| .|.+|++|.+++...+|++|||+-.. ..|+||||+||+++.+|+.+.+.|.
T Consensus 149 qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga 227 (521)
T KOG1230|consen 149 QFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGA 227 (521)
T ss_pred hhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCC
Confidence 3679999999999999998875 79999999999999999999998443 3479999999999999999999988
Q ss_pred CCCcccceEEEEEcCCEEEEEeCCC---------CCcCcCcEEEEECCC-----CcEEeeccCCCCCCCccccEEEEECC
Q 008260 344 PPSPRSDHAAAVHAERYLLIFGGGS---------HAACFNDLHVLDLQT-----MEWSRPTQQGEIPTPRAGHAGVTIGE 409 (572)
Q Consensus 344 ~p~~R~~~~~~~~~~~~lyv~GG~~---------~~~~~~~v~~yd~~t-----~~W~~v~~~g~~p~~R~~~~~~~~~~ 409 (572)
.|.||++|+..+..++.|||+||++ .+..++|+|.++++. .+|+++...|.-|.||.++++++..+
T Consensus 228 ~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n 307 (521)
T KOG1230|consen 228 GPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKN 307 (521)
T ss_pred CCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecC
Confidence 9999999999999666799999985 356778999999998 88999999999999999999999875
Q ss_pred ccccceeeeeeccCCCCEEEEEcCCC----------CCccCcEEEEeCCCCcccccccCCCCCC
Q 008260 410 NWFLGLSLVVSSYSGEDVIVAFGGYN----------GRYNNEVHVLKPSHKSTLSSKMIETPVP 463 (572)
Q Consensus 410 ~~~iG~s~~~~~~~g~~~l~v~GG~~----------~~~~~dv~~yd~~~~~~~~~~~~~~~~~ 463 (572)
. +-+.|||.. +.++||+|.||+..+.|....+....++
T Consensus 308 ~----------------kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~~S~ 355 (521)
T KOG1230|consen 308 H----------------KALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQGKKSP 355 (521)
T ss_pred C----------------ceEEecceecccccchhhhhhhhhhhhheecccchhhHhhhccCCCC
Confidence 3 899999963 2489999999999999988765544433
No 7
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=333.28 Aligned_cols=244 Identities=12% Similarity=0.182 Sum_probs=212.0
Q ss_pred eeeec----ceEEecccCCCCCCCCcceeEEEECCEEEEEccCC-CCcccCcEEEEEcCCCcEEEeeecccccCCCCCCC
Q 008260 166 SVVVY----DQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNH-NGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSP 240 (572)
Q Consensus 166 ~~~~~----~~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~ 240 (572)
.+++| ++|..+++ +|.+|.+|++++++++|||+||.. ....++++++||+.+++|..+++|
T Consensus 273 ~v~~yd~~~~~W~~l~~---mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m----------- 338 (557)
T PHA02713 273 CILVYNINTMEYSVIST---IPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM----------- 338 (557)
T ss_pred CEEEEeCCCCeEEECCC---CCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC-----------
Confidence 34555 58999985 899999999999999999999975 345678999999999999998876
Q ss_pred CCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCC-
Q 008260 241 ALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKR- 319 (572)
Q Consensus 241 ~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~- 319 (572)
|.+|..|++++++++||++||.+.. ..++++++|||.+++|+.++ ++|.+|.++++++++++||++||.+...
T Consensus 339 --~~~R~~~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~IYviGG~~~~~~ 412 (557)
T PHA02713 339 --IKNRCRFSLAVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYIYIIGGRTEHID 412 (557)
T ss_pred --cchhhceeEEEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECC---CCCcccccccEEEECCEEEEEeCCCcccc
Confidence 5899999999999999999998754 45788999999999999998 6899999999999999999999986432
Q ss_pred ----------------CCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcC-cCcEEEEECC
Q 008260 320 ----------------SLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAAC-FNDLHVLDLQ 382 (572)
Q Consensus 320 ----------------~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~-~~~v~~yd~~ 382 (572)
..++.+++|||.+++|+.++++ +.+|..++++++++ +|||+||.+.... .+.+++|||+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m---~~~r~~~~~~~~~~-~IYv~GG~~~~~~~~~~ve~Ydp~ 488 (557)
T PHA02713 413 YTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF---WTGTIRPGVVSHKD-DIYVVCDIKDEKNVKTCIFRYNTN 488 (557)
T ss_pred cccccccccccccccccccceEEEECCCCCeEeecCCC---CcccccCcEEEECC-EEEEEeCCCCCCccceeEEEecCC
Confidence 1257899999999999999877 88999999999865 6999999864433 3468999999
Q ss_pred C-CcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCCccccc
Q 008260 383 T-MEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKSTLSS 455 (572)
Q Consensus 383 t-~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~~~~~~ 455 (572)
+ ++|+.++ ++|.+|..++++++++ +||++||+++. .++++||+.+++|...
T Consensus 489 ~~~~W~~~~---~m~~~r~~~~~~~~~~-----------------~iyv~Gg~~~~--~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 489 TYNGWELIT---TTESRLSALHTILHDN-----------------TIMMLHCYESY--MLQDTFNVYTYEWNHI 540 (557)
T ss_pred CCCCeeEcc---ccCcccccceeEEECC-----------------EEEEEeeecce--eehhhcCcccccccch
Confidence 9 8999986 5999999999999987 89999999884 4799999999999754
No 8
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.1e-35 Score=320.11 Aligned_cols=255 Identities=22% Similarity=0.397 Sum_probs=213.7
Q ss_pred eeeec----ceEEecccCCCCCC-CCcceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCC
Q 008260 166 SVVVY----DQWIAPPISGQRPK-ARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSP 240 (572)
Q Consensus 166 ~~~~~----~~W~~~~~~g~~p~-~R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~ 240 (572)
.+++| ++|+.+++.+.+|. +|.+|++++++++||||||......++++|+||+.+++|++++++.
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~---------- 263 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVE---------- 263 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCC----------
Confidence 35555 58999887766665 4678999999999999999877777899999999999999987653
Q ss_pred CCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCC
Q 008260 241 ALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRS 320 (572)
Q Consensus 241 ~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~ 320 (572)
..|.+|.+|+++.++++|||+||.+.. ..++++++||+.+++|+.+++.+.+|.+|.+|++++++++||++||.++.
T Consensus 264 ~~P~~R~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-- 340 (470)
T PLN02193 264 EGPTPRSFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-- 340 (470)
T ss_pred CCCCCccceEEEEECCEEEEECCCCCC-CCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC--
Confidence 237899999999999999999999765 56789999999999999998766788999999999999999999998654
Q ss_pred CCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCC---------CcCcCcEEEEECCCCcEEeecc
Q 008260 321 LLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH---------AACFNDLHVLDLQTMEWSRPTQ 391 (572)
Q Consensus 321 ~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~---------~~~~~~v~~yd~~t~~W~~v~~ 391 (572)
.++++++||+.+++|+.++..+..|.+|..|+++++++ +||||||... ....+++|+||+.+++|+.+..
T Consensus 341 ~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 341 EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGK-HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECC-EEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 37899999999999999998877899999999998854 6999999743 2356799999999999999865
Q ss_pred CC---CCCCCccccEEE--EECCccccceeeeeeccCCCCEEEEEcCCCC--CccCcEEEEeCCC
Q 008260 392 QG---EIPTPRAGHAGV--TIGENWFLGLSLVVSSYSGEDVIVAFGGYNG--RYNNEVHVLKPSH 449 (572)
Q Consensus 392 ~g---~~p~~R~~~~~~--~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~--~~~~dv~~yd~~~ 449 (572)
.+ ..|.+|..|+++ .+.+ ++.|++|||+++ ..++|+|+|++.+
T Consensus 420 ~~~~~~~P~~R~~~~~~~~~~~~---------------~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 420 FGEEEETPSSRGWTASTTGTIDG---------------KKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred CCCCCCCCCCCccccceeeEEcC---------------CceEEEEcCCCCccccccceEEEecCC
Confidence 43 357888877543 3333 336999999964 5899999998754
No 9
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=3.9e-35 Score=315.14 Aligned_cols=265 Identities=37% Similarity=0.622 Sum_probs=234.0
Q ss_pred eeecceEEec-ccCCCCCCCCcceeEEEECCEEEEEccCCCCcccCc--EEEEEcCCCcEEEeeecccccCCCCCCCCCC
Q 008260 167 VVVYDQWIAP-PISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSD--MHILDLRSWAWSKIQAKAVAESTESPSPALL 243 (572)
Q Consensus 167 ~~~~~~W~~~-~~~g~~p~~R~~~s~~~~~~~lyv~GG~~~~~~~~~--v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p 243 (572)
...+..|... ...+..|.+|++|+++.+++++|||||........+ +|++|..+..|....... ..|
T Consensus 41 ~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g----------~~p 110 (482)
T KOG0379|consen 41 FPLFQPENLGCDVLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATG----------DEP 110 (482)
T ss_pred cceeeeeccccccCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccC----------CCC
Confidence 3334455554 355679999999999999999999999776655554 999999999999877654 346
Q ss_pred CCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCC
Q 008260 244 TPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLN 323 (572)
Q Consensus 244 ~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~ 323 (572)
.+|++|+++.++++||+|||.+.....+++++.||+.+.+|..+.+.+.+|.+|.+|++++++++||||||.+......|
T Consensus 111 ~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~n 190 (482)
T KOG0379|consen 111 SPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLN 190 (482)
T ss_pred CcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccccee
Confidence 89999999999999999999997557789999999999999999999889999999999999999999999988876799
Q ss_pred ceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCC-CCcCcCcEEEEECCCCcEEeeccCCCCCCCcccc
Q 008260 324 DLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS-HAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGH 402 (572)
Q Consensus 324 ~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~ 402 (572)
++|+||+++.+|.++...|..|.||.+|+++++++. ++|+||.. +..+++|+|.||+.+.+|..+...+..|.+|++|
T Consensus 191 dl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~-~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h 269 (482)
T KOG0379|consen 191 DLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNK-LLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGH 269 (482)
T ss_pred eeeeeccccccceecccCCCCCCCCCCceEEEECCe-EEEEeccccCCceecceEeeecccceeeeccccCCCCCCccee
Confidence 999999999999999999999999999999999765 88888876 8889999999999999999998889999999999
Q ss_pred EEEEECCccccceeeeeeccCCCCEEEEEcCCCCC---ccCcEEEEeCCCCcccccccCC
Q 008260 403 AGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR---YNNEVHVLKPSHKSTLSSKMIE 459 (572)
Q Consensus 403 ~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~---~~~dv~~yd~~~~~~~~~~~~~ 459 (572)
++++.++ .++|+||.... .+.++|.|+.++..|.......
T Consensus 270 ~~~~~~~-----------------~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 270 SLTVSGD-----------------HLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred eeEEECC-----------------EEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 9998876 89999998662 6899999999999887765544
No 10
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=6.3e-35 Score=272.34 Aligned_cols=235 Identities=27% Similarity=0.486 Sum_probs=208.7
Q ss_pred eEEecccC-------C---CCCCCCcceeEEEECCEEEEEccCCC-CcccCcEEEEEcCCCcEEEeeecccccCCCCCCC
Q 008260 172 QWIAPPIS-------G---QRPKARYEHGAAVVQDKMYIYGGNHN-GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSP 240 (572)
Q Consensus 172 ~W~~~~~~-------g---~~p~~R~~~s~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~ 240 (572)
.|+++++. + -.|--|++|+++..++++||.||.++ ....|-++.||++++.|.+.....
T Consensus 55 RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G---------- 124 (392)
T KOG4693|consen 55 RWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEG---------- 124 (392)
T ss_pred eEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceee----------
Confidence 89988761 1 24566999999999999999999765 567899999999999999876543
Q ss_pred CCCCCCcceeEEEeCCEEEEEeccCCC-CCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCC
Q 008260 241 ALLTPCAGHSLIPWENKLLSIAGHTKD-PSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKR 319 (572)
Q Consensus 241 ~~p~~R~~hs~~~~~~~iyv~GG~~~~-~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~ 319 (572)
..|..|-+|++|++++.+|+|||+..+ ....++++++|+.+.+|+.+.+.|.+|.-|..|+++++++.+|||||..+..
T Consensus 125 ~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~ 204 (392)
T KOG4693|consen 125 FVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDES 204 (392)
T ss_pred ecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccC
Confidence 558999999999999999999999765 3567899999999999999999999999999999999999999999985432
Q ss_pred --------CCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCC--CcCcCcEEEEECCCCcEEee
Q 008260 320 --------SLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH--AACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 320 --------~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~t~~W~~v 389 (572)
.+.+.+-.+|+.|..|.+.++.+..|..|..|++.++++ .||+|||+++ +..++++|+|||.+..|..+
T Consensus 205 gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng-~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I 283 (392)
T KOG4693|consen 205 GPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNG-KMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVI 283 (392)
T ss_pred CCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcc-eEEEecccchhhhhhhcceeecccccchheee
Confidence 356789999999999999988888899999999999965 6999999875 46789999999999999999
Q ss_pred ccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCC
Q 008260 390 TQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGY 434 (572)
Q Consensus 390 ~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~ 434 (572)
...|..|++|..+++++.++ ++|+|||.
T Consensus 284 ~~~Gk~P~aRRRqC~~v~g~-----------------kv~LFGGT 311 (392)
T KOG4693|consen 284 SVRGKYPSARRRQCSVVSGG-----------------KVYLFGGT 311 (392)
T ss_pred eccCCCCCcccceeEEEECC-----------------EEEEecCC
Confidence 99999999999999999988 89999995
No 11
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.6e-33 Score=308.30 Aligned_cols=241 Identities=18% Similarity=0.282 Sum_probs=204.9
Q ss_pred ceEEecccCCCCCCCCcceeEEEECCEEEEEccCCCC-cccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcce
Q 008260 171 DQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNG-RYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGH 249 (572)
Q Consensus 171 ~~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~h 249 (572)
++|..++. .| .+..|++++++++||++||.... ...+++++||+.+++|..++++ |.+|.+|
T Consensus 274 ~~~~~~~~---~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-------------~~~R~~~ 336 (534)
T PHA03098 274 SEINTIID---IH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL-------------IYPRKNP 336 (534)
T ss_pred hhcccccC---cc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCC-------------Ccccccc
Confidence 35666542 33 35567899999999999997653 4567999999999999988765 5799999
Q ss_pred eEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEE
Q 008260 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILD 329 (572)
Q Consensus 250 s~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd 329 (572)
+++.++++||++||.... ...+++++||+.+++|+.++ ++|.+|.+|+++.++++||++||.......++++++||
T Consensus 337 ~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd 412 (534)
T PHA03098 337 GVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFS 412 (534)
T ss_pred eEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEe
Confidence 999999999999998744 56789999999999999987 68899999999999999999999865555578999999
Q ss_pred CCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCc---CcCcEEEEECCCCcEEeeccCCCCCCCccccEEEE
Q 008260 330 LETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAA---CFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVT 406 (572)
Q Consensus 330 ~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~---~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~ 406 (572)
+.+++|+.++++ |.+|.+|++++++ ++|||+||.+... .++.+++||+.+++|+.++ .+|.+|.++++++
T Consensus 413 ~~t~~W~~~~~~---p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~ 485 (534)
T PHA03098 413 LNTNKWSKGSPL---PISHYGGCAIYHD-GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS---SLNFPRINASLCI 485 (534)
T ss_pred CCCCeeeecCCC---CccccCceEEEEC-CEEEEECCccCCCCCcccceEEEecCCCCceeeCC---CCCcccccceEEE
Confidence 999999999766 8899999988885 4699999975432 3577999999999999986 4788999999998
Q ss_pred ECCccccceeeeeeccCCCCEEEEEcCCCCC-ccCcEEEEeCCCCcccccc
Q 008260 407 IGENWFLGLSLVVSSYSGEDVIVAFGGYNGR-YNNEVHVLKPSHKSTLSSK 456 (572)
Q Consensus 407 ~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~-~~~dv~~yd~~~~~~~~~~ 456 (572)
+++ +||++||.++. ..+++++||+.++.|....
T Consensus 486 ~~~-----------------~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 486 FNN-----------------KIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred ECC-----------------EEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 876 89999999764 4789999999999997654
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=308.05 Aligned_cols=232 Identities=23% Similarity=0.397 Sum_probs=207.5
Q ss_pred CCCCcceeEEEECCEEEEEccCCC-CcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEE
Q 008260 183 PKARYEHGAAVVQDKMYIYGGNHN-GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSI 261 (572)
Q Consensus 183 p~~R~~~s~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~ 261 (572)
+.+|..... ...+.||++||... ....+.+..||+.+++|..++++ |.+|..+++++++++||++
T Consensus 273 ~~~~t~~r~-~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m-------------~~~r~~~~~~~~~~~lYv~ 338 (571)
T KOG4441|consen 273 QSPRTRPRR-SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM-------------PSPRCRVGVAVLNGKLYVV 338 (571)
T ss_pred cCCCcccCc-CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC-------------CcccccccEEEECCEEEEE
Confidence 444433332 45689999999876 78889999999999999999987 5899999999999999999
Q ss_pred eccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCC
Q 008260 262 AGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAV 341 (572)
Q Consensus 262 GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~ 341 (572)
||.+.....++++++||+.+++|+.++ +|+.+|..++++++++.||++||+++.. .++.+++||+.+++|+.++++
T Consensus 339 GG~~~~~~~l~~ve~YD~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~va~m 414 (571)
T KOG4441|consen 339 GGYDSGSDRLSSVERYDPRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTPVAPM 414 (571)
T ss_pred ccccCCCcccceEEEecCCCCceeccC---CccCccccceeEEECCEEEEEecccccc-ccccEEEecCCCCcccccCCC
Confidence 999953478899999999999999988 7999999999999999999999999776 589999999999999999887
Q ss_pred CCCCCcccceEEEEEcCCEEEEEeCCCCCc-CcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeee
Q 008260 342 GVPPSPRSDHAAAVHAERYLLIFGGGSHAA-CFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVS 420 (572)
Q Consensus 342 g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~ 420 (572)
+.+|++|+++++++ +||++||.+... +++.+++|||.+++|+.++ +|+.+|.+++++++++
T Consensus 415 ---~~~r~~~gv~~~~g-~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~---~M~~~R~~~g~a~~~~----------- 476 (571)
T KOG4441|consen 415 ---LTRRSGHGVAVLGG-KLYIIGGGDGSSNCLNSVECYDPETNTWTLIA---PMNTRRSGFGVAVLNG----------- 476 (571)
T ss_pred ---CcceeeeEEEEECC-EEEEEcCcCCCccccceEEEEcCCCCceeecC---CcccccccceEEEECC-----------
Confidence 77999999999955 699999988877 9999999999999999996 4999999999999987
Q ss_pred ccCCCCEEEEEcCCCCC-ccCcEEEEeCCCCcccccc
Q 008260 421 SYSGEDVIVAFGGYNGR-YNNEVHVLKPSHKSTLSSK 456 (572)
Q Consensus 421 ~~~g~~~l~v~GG~~~~-~~~dv~~yd~~~~~~~~~~ 456 (572)
.||++||+++. ....|++|||.+++|....
T Consensus 477 ------~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 477 ------KIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred ------EEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 89999999983 5677999999999998875
No 13
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=4.9e-32 Score=279.15 Aligned_cols=222 Identities=19% Similarity=0.255 Sum_probs=184.0
Q ss_pred eEEecccCCCCCCCCcceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCcE----EEeeecccccCCCCCCCCCCCCCc
Q 008260 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAW----SKIQAKAVAESTESPSPALLTPCA 247 (572)
Q Consensus 172 ~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W----~~~~~~~~~~~~~~~~~~~p~~R~ 247 (572)
+|..+++ +|.+|..+++++++++||++||..+...++++++||+.+++| ..+++ +|.+|.
T Consensus 52 ~W~~~~~---lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~-------------lp~~~~ 115 (323)
T TIGR03548 52 KWVKDGQ---LPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGN-------------LPFTFE 115 (323)
T ss_pred eEEEccc---CCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCC-------------CCcCcc
Confidence 6988874 899998888999999999999987777789999999999998 34433 478999
Q ss_pred ceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCC-CCCcceEEEEECCEEEEEecCCCCCCCCCceE
Q 008260 248 GHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPP-VSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLH 326 (572)
Q Consensus 248 ~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p-~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~ 326 (572)
.|++++++++||++||.... ...+++++||+.+++|+.++ ++| .+|..|++++++++|||+||.+... ..+++
T Consensus 116 ~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~~p~~~r~~~~~~~~~~~iYv~GG~~~~~--~~~~~ 189 (323)
T TIGR03548 116 NGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELP---DFPGEPRVQPVCVKLQNELYVFGGGSNIA--YTDGY 189 (323)
T ss_pred CceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECC---CCCCCCCCcceEEEECCEEEEEcCCCCcc--ccceE
Confidence 99999999999999998543 55789999999999999997 455 4799999999999999999986543 46799
Q ss_pred EEECCCCcEEEeeCCCC--CCCcccceEEEEEcCCEEEEEeCCCCCc--------------------------------C
Q 008260 327 ILDLETMTWDEIDAVGV--PPSPRSDHAAAVHAERYLLIFGGGSHAA--------------------------------C 372 (572)
Q Consensus 327 ~yd~~t~~W~~v~~~g~--~p~~R~~~~~~~~~~~~lyv~GG~~~~~--------------------------------~ 372 (572)
+||+++++|+.++++.. .|.++..++++++.+++|||+||.+... +
T Consensus 190 ~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (323)
T TIGR03548 190 KYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNW 269 (323)
T ss_pred EEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCc
Confidence 99999999999987632 3444556666666677899999976421 2
Q ss_pred cCcEEEEECCCCcEEeeccCCCCC-CCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCC
Q 008260 373 FNDLHVLDLQTMEWSRPTQQGEIP-TPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN 435 (572)
Q Consensus 373 ~~~v~~yd~~t~~W~~v~~~g~~p-~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~ 435 (572)
.+++++||+.+++|+.++ ++| .+|.+++++.+++ +||++||..
T Consensus 270 ~~~v~~yd~~~~~W~~~~---~~p~~~r~~~~~~~~~~-----------------~iyv~GG~~ 313 (323)
T TIGR03548 270 NRKILIYNVRTGKWKSIG---NSPFFARCGAALLLTGN-----------------NIFSINGEL 313 (323)
T ss_pred CceEEEEECCCCeeeEcc---cccccccCchheEEECC-----------------EEEEEeccc
Confidence 367999999999999986 355 6899999999987 899999974
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=3.1e-31 Score=273.21 Aligned_cols=237 Identities=21% Similarity=0.300 Sum_probs=186.9
Q ss_pred CCCcceeEEEECCEEEEEccCCCC----------cccCcEEEEEcCC--CcEEEeeecccccCCCCCCCCCCCCCcceeE
Q 008260 184 KARYEHGAAVVQDKMYIYGGNHNG----------RYLSDMHILDLRS--WAWSKIQAKAVAESTESPSPALLTPCAGHSL 251 (572)
Q Consensus 184 ~~R~~~s~~~~~~~lyv~GG~~~~----------~~~~~v~~yd~~t--~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~ 251 (572)
..+.++.++++++.|||+||.+.. ..++++++|+... .+|..++++ |.+|..+++
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~l-------------p~~r~~~~~ 68 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQL-------------PYEAAYGAS 68 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccC-------------CccccceEE
Confidence 467889999999999999997532 3457899996333 379888765 588988888
Q ss_pred EEeCCEEEEEeccCCCCCcceeEEEEECCCCceE-EeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEEC
Q 008260 252 IPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWS-TLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDL 330 (572)
Q Consensus 252 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 330 (572)
++++++||++||.... ..++++++||+.+++|+ .....+++|.+|..|++++++++|||+||..... .++++++||+
T Consensus 69 ~~~~~~lyviGG~~~~-~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~ 146 (323)
T TIGR03548 69 VSVENGIYYIGGSNSS-ERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGK-PSNKSYLFNL 146 (323)
T ss_pred EEECCEEEEEcCCCCC-CCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCc-cCceEEEEcC
Confidence 9999999999998764 56789999999999983 1222237899999999999999999999985443 4789999999
Q ss_pred CCCcEEEeeCCCCCC-CcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCC--CCCCCccccEEEEE
Q 008260 331 ETMTWDEIDAVGVPP-SPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQG--EIPTPRAGHAGVTI 407 (572)
Q Consensus 331 ~t~~W~~v~~~g~~p-~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g--~~p~~R~~~~~~~~ 407 (572)
.+++|+.++++ | .+|..|++++++ ++|||+||.+... ..++++||+++++|+.++... ..|..+.+++++++
T Consensus 147 ~~~~W~~~~~~---p~~~r~~~~~~~~~-~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~ 221 (323)
T TIGR03548 147 ETQEWFELPDF---PGEPRVQPVCVKLQ-NELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKI 221 (323)
T ss_pred CCCCeeECCCC---CCCCCCcceEEEEC-CEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEE
Confidence 99999999866 4 478888887775 4699999986433 467899999999999986532 24445556666655
Q ss_pred CCccccceeeeeeccCCCCEEEEEcCCCCC---------------------------------ccCcEEEEeCCCCcccc
Q 008260 408 GENWFLGLSLVVSSYSGEDVIVAFGGYNGR---------------------------------YNNEVHVLKPSHKSTLS 454 (572)
Q Consensus 408 ~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~---------------------------------~~~dv~~yd~~~~~~~~ 454 (572)
.+ ++|||+||+++. +.+++++||+.+++|..
T Consensus 222 ~~----------------~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 285 (323)
T TIGR03548 222 NE----------------SLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKS 285 (323)
T ss_pred CC----------------CEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeE
Confidence 42 289999998742 24689999999999987
Q ss_pred cc
Q 008260 455 SK 456 (572)
Q Consensus 455 ~~ 456 (572)
..
T Consensus 286 ~~ 287 (323)
T TIGR03548 286 IG 287 (323)
T ss_pred cc
Confidence 65
No 15
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=3e-31 Score=286.45 Aligned_cols=210 Identities=17% Similarity=0.241 Sum_probs=185.0
Q ss_pred EEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCc
Q 008260 191 AAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSE 270 (572)
Q Consensus 191 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~ 270 (572)
++.+++.||++||.......+++++||+.+++|..++++ +.+|..++++.++++||++||.+..
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m-------------~~~r~~~~~v~~~~~iYviGG~~~~--- 330 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPM-------------NSPRLYASGVPANNKLYVVGGLPNP--- 330 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCC-------------CchhhcceEEEECCEEEEECCcCCC---
Confidence 445899999999987666778999999999999999887 5899999999999999999998532
Q ss_pred ceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccc
Q 008260 271 IIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (572)
Q Consensus 271 ~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~ 350 (572)
+++++||+.+++|+.++ ++|.+|.+|++++++++||++||.+.. .+.+++|||.+++|+.++++ |.+|..
T Consensus 331 -~sve~ydp~~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m---~~~r~~ 400 (480)
T PHA02790 331 -TSVERWFHGDAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPST---YYPHYK 400 (480)
T ss_pred -CceEEEECCCCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCC---CCcccc
Confidence 57999999999999997 689999999999999999999998643 36799999999999999877 899999
Q ss_pred eEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEE
Q 008260 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVA 430 (572)
Q Consensus 351 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v 430 (572)
|+++++++ +|||+||. +++||+++++|+.++ +++.+|.+++++++++ +||+
T Consensus 401 ~~~~~~~~-~IYv~GG~--------~e~ydp~~~~W~~~~---~m~~~r~~~~~~v~~~-----------------~IYv 451 (480)
T PHA02790 401 SCALVFGR-RLFLVGRN--------AEFYCESSNTWTLID---DPIYPRDNPELIIVDN-----------------KLLL 451 (480)
T ss_pred ceEEEECC-EEEEECCc--------eEEecCCCCcEeEcC---CCCCCccccEEEEECC-----------------EEEE
Confidence 99988854 69999983 689999999999986 4889999999999987 8999
Q ss_pred EcCCCC-CccCcEEEEeCCCCccccc
Q 008260 431 FGGYNG-RYNNEVHVLKPSHKSTLSS 455 (572)
Q Consensus 431 ~GG~~~-~~~~dv~~yd~~~~~~~~~ 455 (572)
+||+++ ...+.+++||+.++.|...
T Consensus 452 iGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 452 IGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred ECCcCCCcccceEEEEECCCCeEEec
Confidence 999875 3568899999999999653
No 16
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=3.5e-31 Score=275.59 Aligned_cols=234 Identities=21% Similarity=0.343 Sum_probs=184.2
Q ss_pred ceEEecccCCCCC-CCCcceeEEEECCEEEEEccCCCC------cccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCC
Q 008260 171 DQWIAPPISGQRP-KARYEHGAAVVQDKMYIYGGNHNG------RYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALL 243 (572)
Q Consensus 171 ~~W~~~~~~g~~p-~~R~~~s~~~~~~~lyv~GG~~~~------~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p 243 (572)
++|..+++ +| .+|.+|++++++++|||+||.... ..++++++||+.+++|+.++.+ +|
T Consensus 41 ~~W~~l~~---~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~------------~p 105 (346)
T TIGR03547 41 KGWQKIAD---FPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTR------------SP 105 (346)
T ss_pred CCceECCC---CCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCC------------CC
Confidence 58999985 77 589999999999999999997532 2578999999999999998632 25
Q ss_pred CCCcceeEE-EeCCEEEEEeccCCCC---------------------------------CcceeEEEEECCCCceEEecc
Q 008260 244 TPCAGHSLI-PWENKLLSIAGHTKDP---------------------------------SEIIQVKVFDLQTCSWSTLKT 289 (572)
Q Consensus 244 ~~R~~hs~~-~~~~~iyv~GG~~~~~---------------------------------~~~~~v~~yd~~~~~W~~~~~ 289 (572)
.+|.+|+++ .++++||++||..... ..++++++||+.+++|+.++
T Consensus 106 ~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~- 184 (346)
T TIGR03547 106 VGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG- 184 (346)
T ss_pred CcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc-
Confidence 778888877 6899999999986320 01478999999999999997
Q ss_pred CCCCCC-CCcceEEEEECCEEEEEecCCCCCCCCCceEEEE--CCCCcEEEeeCCCCCCCcc-------cceEEEEEcCC
Q 008260 290 YGKPPV-SRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILD--LETMTWDEIDAVGVPPSPR-------SDHAAAVHAER 359 (572)
Q Consensus 290 ~g~~p~-~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd--~~t~~W~~v~~~g~~p~~R-------~~~~~~~~~~~ 359 (572)
++|. +|.++++++++++|||+||.........+++.|| +++++|+.++++ |.+| ..|+++++ ++
T Consensus 185 --~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m---~~~r~~~~~~~~~~~a~~~-~~ 258 (346)
T TIGR03547 185 --ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPL---PPPKSSSQEGLAGAFAGIS-NG 258 (346)
T ss_pred --cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCC---CCCCCCccccccEEeeeEE-CC
Confidence 5675 6889999999999999999865432235566665 467799999877 4443 35556666 45
Q ss_pred EEEEEeCCCCCc-----------------CcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeecc
Q 008260 360 YLLIFGGGSHAA-----------------CFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSY 422 (572)
Q Consensus 360 ~lyv~GG~~~~~-----------------~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~ 422 (572)
+|||+||.+... .+..+++||+++++|+.+. ++|.+|.+++++++++
T Consensus 259 ~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~---~lp~~~~~~~~~~~~~------------- 322 (346)
T TIGR03547 259 VLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG---KLPQGLAYGVSVSWNN------------- 322 (346)
T ss_pred EEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC---CCCCCceeeEEEEcCC-------------
Confidence 799999975211 1246899999999999885 4899999988888877
Q ss_pred CCCCEEEEEcCCCC--CccCcEEEEe
Q 008260 423 SGEDVIVAFGGYNG--RYNNEVHVLK 446 (572)
Q Consensus 423 ~g~~~l~v~GG~~~--~~~~dv~~yd 446 (572)
+|||+||.+. ..+++|+.|.
T Consensus 323 ----~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 323 ----GVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred ----EEEEEeccCCCCCEeeeEEEEE
Confidence 8999999864 5788888764
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.98 E-value=7.8e-31 Score=275.44 Aligned_cols=241 Identities=20% Similarity=0.335 Sum_probs=187.7
Q ss_pred ceEEecccCCCCC-CCCcceeEEEECCEEEEEccCCC------CcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCC
Q 008260 171 DQWIAPPISGQRP-KARYEHGAAVVQDKMYIYGGNHN------GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALL 243 (572)
Q Consensus 171 ~~W~~~~~~g~~p-~~R~~~s~~~~~~~lyv~GG~~~------~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p 243 (572)
++|..+++ +| .+|.+|++++++++|||+||... ...++++++||+.+++|+.++.+. |
T Consensus 62 ~~W~~l~~---~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~------------p 126 (376)
T PRK14131 62 KGWTKIAA---FPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRS------------P 126 (376)
T ss_pred CCeEECCc---CCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCC------------C
Confidence 57998874 55 58999999999999999999653 135789999999999999987532 5
Q ss_pred CCCcceeEEE-eCCEEEEEeccCCCC---------------------------------CcceeEEEEECCCCceEEecc
Q 008260 244 TPCAGHSLIP-WENKLLSIAGHTKDP---------------------------------SEIIQVKVFDLQTCSWSTLKT 289 (572)
Q Consensus 244 ~~R~~hs~~~-~~~~iyv~GG~~~~~---------------------------------~~~~~v~~yd~~~~~W~~~~~ 289 (572)
.+|.+|++++ .+++||++||..... ...+++++||+.+++|+.+.
T Consensus 127 ~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~- 205 (376)
T PRK14131 127 VGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG- 205 (376)
T ss_pred CcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC-
Confidence 6778888877 799999999975310 12478999999999999987
Q ss_pred CCCCCC-CCcceEEEEECCEEEEEecCCCCCCCCCceE--EEECCCCcEEEeeCCCCCCCccc--------ceEEEEEcC
Q 008260 290 YGKPPV-SRGGQSVTLVGTSLVIFGGEDAKRSLLNDLH--ILDLETMTWDEIDAVGVPPSPRS--------DHAAAVHAE 358 (572)
Q Consensus 290 ~g~~p~-~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~--~yd~~t~~W~~v~~~g~~p~~R~--------~~~~~~~~~ 358 (572)
++|. +|.+|+++.++++|||+||.........+++ .||+++++|+.+.++ |.+|. .+.++++ +
T Consensus 206 --~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~~a~~~-~ 279 (376)
T PRK14131 206 --ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL---PPAPGGSSQEGVAGAFAGYS-N 279 (376)
T ss_pred --cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCC---CCCCcCCcCCccceEeceeE-C
Confidence 5675 7888999999999999999754432244555 457789999999877 55543 2223445 5
Q ss_pred CEEEEEeCCCCCc-----------------CcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeec
Q 008260 359 RYLLIFGGGSHAA-----------------CFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSS 421 (572)
Q Consensus 359 ~~lyv~GG~~~~~-----------------~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~ 421 (572)
++|||+||.+... ....+++||+++++|+.+. .+|.+|.+++++++++
T Consensus 280 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~---~lp~~r~~~~av~~~~------------ 344 (376)
T PRK14131 280 GVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG---ELPQGLAYGVSVSWNN------------ 344 (376)
T ss_pred CEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC---cCCCCccceEEEEeCC------------
Confidence 5799999965311 0124679999999999885 5899999999888877
Q ss_pred cCCCCEEEEEcCCCC--CccCcEEEEeCCCCccc
Q 008260 422 YSGEDVIVAFGGYNG--RYNNEVHVLKPSHKSTL 453 (572)
Q Consensus 422 ~~g~~~l~v~GG~~~--~~~~dv~~yd~~~~~~~ 453 (572)
+|||+||... ...++|++|++..+.+.
T Consensus 345 -----~iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 345 -----GVLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred -----EEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 8999999854 47899999999877554
No 18
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=3.8e-30 Score=267.82 Aligned_cols=236 Identities=21% Similarity=0.253 Sum_probs=183.6
Q ss_pred CCCCCCcceeEEEECCEEEEEccCCCCcccCcEEEEEc--CCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEE
Q 008260 181 QRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDL--RSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKL 258 (572)
Q Consensus 181 ~~p~~R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~--~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~i 258 (572)
++|.+|..+++++++++|||+||... +++++||+ .+++|..+++++ ..+|..|++++++++|
T Consensus 3 ~lp~~~~~~~~~~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~~p------------~~~R~~~~~~~~~~~i 66 (346)
T TIGR03547 3 DLPVGFKNGTGAIIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIADFP------------GGPRNQAVAAAIDGKL 66 (346)
T ss_pred CCCccccCceEEEECCEEEEEccccC----CeeEEEECCCCCCCceECCCCC------------CCCcccceEEEECCEE
Confidence 48899999999999999999999632 67999996 578999998763 2589999999999999
Q ss_pred EEEeccCCCC-----CcceeEEEEECCCCceEEeccCCCCCCCCcceEEE-EECCEEEEEecCCCCC-------------
Q 008260 259 LSIAGHTKDP-----SEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVT-LVGTSLVIFGGEDAKR------------- 319 (572)
Q Consensus 259 yv~GG~~~~~-----~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~-~~~~~iyv~GG~~~~~------------- 319 (572)
||+||..... ..++++++||+.+++|+.++. .+|.+|.+|+++ +++++||++||.+...
T Consensus 67 Yv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~ 144 (346)
T TIGR03547 67 YVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADK 144 (346)
T ss_pred EEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCc
Confidence 9999986432 246899999999999999973 467788888777 6899999999986320
Q ss_pred --------------------CCCCceEEEECCCCcEEEeeCCCCCCC-cccceEEEEEcCCEEEEEeCCCCCcC-cCcEE
Q 008260 320 --------------------SLLNDLHILDLETMTWDEIDAVGVPPS-PRSDHAAAVHAERYLLIFGGGSHAAC-FNDLH 377 (572)
Q Consensus 320 --------------------~~~~~v~~yd~~t~~W~~v~~~g~~p~-~R~~~~~~~~~~~~lyv~GG~~~~~~-~~~v~ 377 (572)
..++++++||+.+++|+.++++ |. +|..+++++++ ++|||+||...... ..+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~---p~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~ 220 (346)
T TIGR03547 145 DSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGEN---PFLGTAGSAIVHKG-NKLLLINGEIKPGLRTAEVK 220 (346)
T ss_pred cchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccC---CCCcCCCceEEEEC-CEEEEEeeeeCCCccchheE
Confidence 1247899999999999999876 54 67888888875 57999999754332 24566
Q ss_pred EEE--CCCCcEEeeccCCCCCCCc-------cccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCC-----------
Q 008260 378 VLD--LQTMEWSRPTQQGEIPTPR-------AGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR----------- 437 (572)
Q Consensus 378 ~yd--~~t~~W~~v~~~g~~p~~R-------~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~----------- 437 (572)
.|| +.+++|+.++. +|.+| .+|+++++++ +|||+||.+..
T Consensus 221 ~y~~~~~~~~W~~~~~---m~~~r~~~~~~~~~~~a~~~~~-----------------~Iyv~GG~~~~~~~~~~~~~~~ 280 (346)
T TIGR03547 221 QYLFTGGKLEWNKLPP---LPPPKSSSQEGLAGAFAGISNG-----------------VLLVAGGANFPGAQENYKNGKL 280 (346)
T ss_pred EEEecCCCceeeecCC---CCCCCCCccccccEEeeeEECC-----------------EEEEeecCCCCCchhhhhcCCc
Confidence 665 57789999864 55554 3555677766 89999998521
Q ss_pred -------ccCcEEEEeCCCCcccccccC
Q 008260 438 -------YNNEVHVLKPSHKSTLSSKMI 458 (572)
Q Consensus 438 -------~~~dv~~yd~~~~~~~~~~~~ 458 (572)
..+.+++||+.+++|......
T Consensus 281 ~~~~~~~~~~~~e~yd~~~~~W~~~~~l 308 (346)
T TIGR03547 281 YAHEGLIKAWSSEVYALDNGKWSKVGKL 308 (346)
T ss_pred cccCCCCceeEeeEEEecCCcccccCCC
Confidence 124689999999999766533
No 19
>PHA02713 hypothetical protein; Provisional
Probab=99.97 E-value=5.1e-30 Score=280.84 Aligned_cols=219 Identities=11% Similarity=0.123 Sum_probs=183.8
Q ss_pred EEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEEE
Q 008260 197 KMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKV 276 (572)
Q Consensus 197 ~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~ 276 (572)
.|++.||.. ......+++||+.+++|..++++ |.+|.+|++++++++||++||........+++++
T Consensus 259 ~l~~~~g~~-~~~~~~v~~yd~~~~~W~~l~~m-------------p~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~ 324 (557)
T PHA02713 259 CLVCHDTKY-NVCNPCILVYNINTMEYSVISTI-------------PNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYK 324 (557)
T ss_pred EEEEecCcc-ccCCCCEEEEeCCCCeEEECCCC-------------CccccceEEEEECCEEEEEcCCCCCCCccceEEE
Confidence 455555521 22335789999999999999876 5889999999999999999998644356789999
Q ss_pred EECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEE
Q 008260 277 FDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVH 356 (572)
Q Consensus 277 yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~ 356 (572)
||+.+++|..++ +||.+|..+++++++++||++||.++.. .++++++||+.+++|+.++++ |.+|..++++++
T Consensus 325 Yd~~~n~W~~~~---~m~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~m---p~~r~~~~~~~~ 397 (557)
T PHA02713 325 INIENKIHVELP---PMIKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLPDM---PIALSSYGMCVL 397 (557)
T ss_pred EECCCCeEeeCC---CCcchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECCCC---CcccccccEEEE
Confidence 999999999987 6899999999999999999999987554 478899999999999999877 899999999988
Q ss_pred cCCEEEEEeCCCCC------------------cCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeee
Q 008260 357 AERYLLIFGGGSHA------------------ACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLV 418 (572)
Q Consensus 357 ~~~~lyv~GG~~~~------------------~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~ 418 (572)
+ ++||++||.+.. ..++.+++|||.+++|+.++ +|+.+|.+++++++++
T Consensus 398 ~-g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~--------- 464 (557)
T PHA02713 398 D-QYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKD--------- 464 (557)
T ss_pred C-CEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECC---------
Confidence 5 579999997632 13578999999999999986 4899999999999987
Q ss_pred eeccCCCCEEEEEcCCCCC--ccCcEEEEeCCC-Cccccccc
Q 008260 419 VSSYSGEDVIVAFGGYNGR--YNNEVHVLKPSH-KSTLSSKM 457 (572)
Q Consensus 419 ~~~~~g~~~l~v~GG~~~~--~~~dv~~yd~~~-~~~~~~~~ 457 (572)
+||++||+++. ..+.+++|||.+ +.|.....
T Consensus 465 --------~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~ 498 (557)
T PHA02713 465 --------DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT 498 (557)
T ss_pred --------EEEEEeCCCCCCccceeEEEecCCCCCCeeEccc
Confidence 89999998753 335689999999 78876543
No 20
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.97 E-value=6.1e-30 Score=274.98 Aligned_cols=255 Identities=37% Similarity=0.663 Sum_probs=223.6
Q ss_pred ceEEecccCCCCCCCCcceeEEEECCEEEEEccCCC-CcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcce
Q 008260 171 DQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHN-GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGH 249 (572)
Q Consensus 171 ~~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~h 249 (572)
..|......|..|.+|++|++++++++||+|||... ...+++++.||+.+++|..+.... ..|++|.+|
T Consensus 98 ~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~----------~~P~~r~~H 167 (482)
T KOG0379|consen 98 QLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTG----------DPPPPRAGH 167 (482)
T ss_pred cccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcC----------CCCCCcccc
Confidence 489999999999999999999999999999999774 566899999999999999998764 358999999
Q ss_pred eEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEE
Q 008260 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILD 329 (572)
Q Consensus 250 s~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd 329 (572)
+++.++++||||||.+......+++|+||+.+.+|.++.+.|..|.||.+|++++++++++||||.+....+++|+|.||
T Consensus 168 s~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ld 247 (482)
T KOG0379|consen 168 SATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILD 247 (482)
T ss_pred eEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeee
Confidence 99999999999999998866899999999999999999999999999999999999999999999986666899999999
Q ss_pred CCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCC--cCcCcEEEEECCCCcEEeeccCC-CCCCCccccEEEE
Q 008260 330 LETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHA--ACFNDLHVLDLQTMEWSRPTQQG-EIPTPRAGHAGVT 406 (572)
Q Consensus 330 ~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~--~~~~~v~~yd~~t~~W~~v~~~g-~~p~~R~~~~~~~ 406 (572)
+.+.+|..+...+..|.+|..|+.++. +.+++|+||.... ..+.++|.||.++..|..+...+ ..|.+|..|+.+.
T Consensus 248 l~~~~W~~~~~~g~~p~~R~~h~~~~~-~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 326 (482)
T KOG0379|consen 248 LSTWEWKLLPTGGDLPSPRSGHSLTVS-GDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAEL 326 (482)
T ss_pred cccceeeeccccCCCCCCcceeeeEEE-CCEEEEEcCCcccccccccccccccccccceeeeecccccccccccccccee
Confidence 999999999999999999999999966 5579999998765 35899999999999999998776 7799999999888
Q ss_pred ECCccccceeeeeeccCCCCEEEEEcCC--CCCccCcEEEEeCCC
Q 008260 407 IGENWFLGLSLVVSSYSGEDVIVAFGGY--NGRYNNEVHVLKPSH 449 (572)
Q Consensus 407 ~~~~~~iG~s~~~~~~~g~~~l~v~GG~--~~~~~~dv~~yd~~~ 449 (572)
+... +...+.++||. .+...++++.+....
T Consensus 327 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (482)
T KOG0379|consen 327 IDEL-------------GKDGLGILGGNQILGERLADVFSLQIKL 358 (482)
T ss_pred eccC-------------CccceeeecCccccccchhhcccccccc
Confidence 7652 23367777773 345666777665444
No 21
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=8.8e-30 Score=255.96 Aligned_cols=256 Identities=27% Similarity=0.522 Sum_probs=219.9
Q ss_pred ceEEecc-cCCCCCCCCcceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcce
Q 008260 171 DQWIAPP-ISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGH 249 (572)
Q Consensus 171 ~~W~~~~-~~g~~p~~R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~h 249 (572)
-.|+.+. ..|+.|.+|.||-++++..-|.||||- +....+.+++|+..+++|..-+.. ..+|++++.|
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGG-NEGiiDELHvYNTatnqWf~Pavr----------GDiPpgcAA~ 85 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGG-NEGIIDELHVYNTATNQWFAPAVR----------GDIPPGCAAF 85 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCC-cccchhhhhhhccccceeecchhc----------CCCCCchhhc
Confidence 3788654 467899999999999999999999993 445778999999999999876654 3678999999
Q ss_pred eEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEec----cCCCCCCCCcceEEEEECCEEEEEecCCCC-------
Q 008260 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLK----TYGKPPVSRGGQSVTLVGTSLVIFGGEDAK------- 318 (572)
Q Consensus 250 s~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~----~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~------- 318 (572)
.++..+.+||+|||+...+.+.++++.+....-.|.++. ..|.+|.+|-+|+..+++++.|+|||...+
T Consensus 86 GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknN 165 (830)
T KOG4152|consen 86 GFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNN 165 (830)
T ss_pred ceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccc
Confidence 999999999999999998899999988888888898885 357889999999999999999999997432
Q ss_pred -CCCCCceEEEECCCC----cEEEeeCCCCCCCcccceEEEEEc-----CCEEEEEeCCCCCcCcCcEEEEECCCCcEEe
Q 008260 319 -RSLLNDLHILDLETM----TWDEIDAVGVPPSPRSDHAAAVHA-----ERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 319 -~~~~~~v~~yd~~t~----~W~~v~~~g~~p~~R~~~~~~~~~-----~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
..|+||+|++++... .|......|..|.+|..|+++++. ..+||||||.++ ..+.|+|.+|+++.+|.+
T Consensus 166 vPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G-~RLgDLW~Ldl~Tl~W~k 244 (830)
T KOG4152|consen 166 VPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG-CRLGDLWTLDLDTLTWNK 244 (830)
T ss_pred cchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc-ccccceeEEecceeeccc
Confidence 148999999998743 599998889999999999999992 247999999765 447999999999999999
Q ss_pred eccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCC-----C----------CccCcEEEEeCCCCccc
Q 008260 389 PTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN-----G----------RYNNEVHVLKPSHKSTL 453 (572)
Q Consensus 389 v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~-----~----------~~~~dv~~yd~~~~~~~ 453 (572)
....|..|.||..|+++++++ ++|||||+- . ++.+.+-++++.+..|.
T Consensus 245 p~~~G~~PlPRSLHsa~~IGn-----------------KMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~ 307 (830)
T KOG4152|consen 245 PSLSGVAPLPRSLHSATTIGN-----------------KMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWE 307 (830)
T ss_pred ccccCCCCCCcccccceeecc-----------------eeEEecceeeeeccccccccccceeeeccceeeeeecchhee
Confidence 999999999999999999988 899999962 1 14677889999998886
Q ss_pred cc
Q 008260 454 SS 455 (572)
Q Consensus 454 ~~ 455 (572)
-.
T Consensus 308 tl 309 (830)
T KOG4152|consen 308 TL 309 (830)
T ss_pred ee
Confidence 54
No 22
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=2.4e-29 Score=252.86 Aligned_cols=250 Identities=31% Similarity=0.601 Sum_probs=213.2
Q ss_pred ceEEecccCCCCCCCCcceeEEEECCEEEEEccCC-CCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcce
Q 008260 171 DQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNH-NGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGH 249 (572)
Q Consensus 171 ~~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~h 249 (572)
|+|......|+.|.+-..|..+..+.+||+|||.. .+++.||+|.+.-....|+++.+.. ......|.||.+|
T Consensus 67 nqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~------p~nG~pPCPRlGH 140 (830)
T KOG4152|consen 67 NQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKT------PKNGPPPCPRLGH 140 (830)
T ss_pred ceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCC------CCCCCCCCCccCc
Confidence 69999999999999999999999999999999964 5789999999998999999987764 2345668899999
Q ss_pred eEEEeCCEEEEEeccCCC--------CCcceeEEEEECCC----CceEEeccCCCCCCCCcceEEEEE------CCEEEE
Q 008260 250 SLIPWENKLLSIAGHTKD--------PSEIIQVKVFDLQT----CSWSTLKTYGKPPVSRGGQSVTLV------GTSLVI 311 (572)
Q Consensus 250 s~~~~~~~iyv~GG~~~~--------~~~~~~v~~yd~~~----~~W~~~~~~g~~p~~R~~~~~~~~------~~~iyv 311 (572)
++..++++.|+|||...+ +.++++++++++.- -.|...-+.|..|.+|-.|.++++ ..++||
T Consensus 141 SFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvv 220 (830)
T KOG4152|consen 141 SFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVV 220 (830)
T ss_pred eeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEE
Confidence 999999999999998654 45689999998874 359999999999999999999998 238999
Q ss_pred EecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCC--------------CcCcCcEE
Q 008260 312 FGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH--------------AACFNDLH 377 (572)
Q Consensus 312 ~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~--------------~~~~~~v~ 377 (572)
|||..+-+ +.|+|.+|++|..|.+....|..|.||+.|+++++++ +||||||.-. =.+.+.+-
T Consensus 221 yGGM~G~R--LgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGn-KMyvfGGWVPl~~~~~~~~~hekEWkCTssl~ 297 (830)
T KOG4152|consen 221 YGGMSGCR--LGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGN-KMYVFGGWVPLVMDDVKVATHEKEWKCTSSLA 297 (830)
T ss_pred Eccccccc--ccceeEEecceeecccccccCCCCCCcccccceeecc-eeEEecceeeeeccccccccccceeeecccee
Confidence 99998775 8999999999999999999999999999999999965 6999999521 14667888
Q ss_pred EEECCCCcEEeecc----CCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCC---ccCcEEEEe
Q 008260 378 VLDLQTMEWSRPTQ----QGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR---YNNEVHVLK 446 (572)
Q Consensus 378 ~yd~~t~~W~~v~~----~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~---~~~dv~~yd 446 (572)
++++.+..|+.+-. ....|.+|.+|+++.++. +||+.-|++|- ..|.|.|=|
T Consensus 298 clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigt-----------------RlYiWSGRDGYrKAwnnQVCCkD 356 (830)
T KOG4152|consen 298 CLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGT-----------------RLYIWSGRDGYRKAWNNQVCCKD 356 (830)
T ss_pred eeeecchheeeeeeccccccccccccccceeEEecc-----------------EEEEEeccchhhHhhccccchhh
Confidence 99999999998722 123799999999999988 89999999872 455555544
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=1.3e-28 Score=258.60 Aligned_cols=241 Identities=19% Similarity=0.237 Sum_probs=183.2
Q ss_pred eEEecccCCCCCCCCcceeEEEECCEEEEEccCCCCcccCcEEEEEcC--CCcEEEeeecccccCCCCCCCCCCCCCcce
Q 008260 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLR--SWAWSKIQAKAVAESTESPSPALLTPCAGH 249 (572)
Q Consensus 172 ~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~~~~~~~~~~~p~~R~~h 249 (572)
.++.++ ++|.+|..+++++++++|||+||... +.+++||+. +++|.++++++ ..+|.+|
T Consensus 18 ~~~~l~---~lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p------------~~~r~~~ 78 (376)
T PRK14131 18 NAEQLP---DLPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFP------------GGPREQA 78 (376)
T ss_pred ecccCC---CCCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCC------------CCCcccc
Confidence 566666 48999998899999999999999532 458999986 47899988763 2589999
Q ss_pred eEEEeCCEEEEEeccCCC-----CCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEE-ECCEEEEEecCCCCC----
Q 008260 250 SLIPWENKLLSIAGHTKD-----PSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKR---- 319 (572)
Q Consensus 250 s~~~~~~~iyv~GG~~~~-----~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~-~~~~iyv~GG~~~~~---- 319 (572)
+++.++++|||+||.... ...++++++||+.+++|+.++. ..|.+|.+|++++ .+++||++||.+...
T Consensus 79 ~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~ 156 (376)
T PRK14131 79 VAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGY 156 (376)
T ss_pred eEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHH
Confidence 999999999999998641 1346899999999999999974 3577788888777 799999999985310
Q ss_pred -----------------------------CCCCceEEEECCCCcEEEeeCCCCCCC-cccceEEEEEcCCEEEEEeCCCC
Q 008260 320 -----------------------------SLLNDLHILDLETMTWDEIDAVGVPPS-PRSDHAAAVHAERYLLIFGGGSH 369 (572)
Q Consensus 320 -----------------------------~~~~~v~~yd~~t~~W~~v~~~g~~p~-~R~~~~~~~~~~~~lyv~GG~~~ 369 (572)
...+++++||+.+++|+.+.++ |. +|..|++++++ ++|||+||...
T Consensus 157 ~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~---p~~~~~~~a~v~~~-~~iYv~GG~~~ 232 (376)
T PRK14131 157 FEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGES---PFLGTAGSAVVIKG-NKLWLINGEIK 232 (376)
T ss_pred HhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcC---CCCCCCcceEEEEC-CEEEEEeeeEC
Confidence 1257899999999999998765 54 67778877774 57999999643
Q ss_pred C-cCcCcEE--EEECCCCcEEeeccCCCCCCCccc--------cEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCc
Q 008260 370 A-ACFNDLH--VLDLQTMEWSRPTQQGEIPTPRAG--------HAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRY 438 (572)
Q Consensus 370 ~-~~~~~v~--~yd~~t~~W~~v~~~g~~p~~R~~--------~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~ 438 (572)
. ....+++ .||+++++|+.+.. +|.+|.+ +.++++++ +|||+||.+...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~W~~~~~---~p~~~~~~~~~~~~~~~a~~~~~-----------------~iyv~GG~~~~~ 292 (376)
T PRK14131 233 PGLRTDAVKQGKFTGNNLKWQKLPD---LPPAPGGSSQEGVAGAFAGYSNG-----------------VLLVAGGANFPG 292 (376)
T ss_pred CCcCChhheEEEecCCCcceeecCC---CCCCCcCCcCCccceEeceeECC-----------------EEEEeeccCCCC
Confidence 2 2234444 55778999999863 6666642 22455655 899999975310
Q ss_pred ------------------cCcEEEEeCCCCccccccc
Q 008260 439 ------------------NNEVHVLKPSHKSTLSSKM 457 (572)
Q Consensus 439 ------------------~~dv~~yd~~~~~~~~~~~ 457 (572)
...+++||+.++.|.....
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~ 329 (376)
T PRK14131 293 ARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGE 329 (376)
T ss_pred ChhhhhcCCcccccCCcceeehheEEecCCcccccCc
Confidence 1346799999999976543
No 24
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=1.8e-28 Score=269.98 Aligned_cols=197 Identities=20% Similarity=0.348 Sum_probs=175.0
Q ss_pred ceEEecccCCCCCCCCcceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCccee
Q 008260 171 DQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHS 250 (572)
Q Consensus 171 ~~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs 250 (572)
++|..+++ +|.+|.+|++++++++||++||..+...++++++||+.+++|+.++++ |.+|.+|+
T Consensus 321 ~~W~~~~~---~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l-------------p~~r~~~~ 384 (534)
T PHA03098 321 KSWNKVPE---LIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPL-------------IFPRYNPC 384 (534)
T ss_pred CeeeECCC---CCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCc-------------CcCCccce
Confidence 58998874 888999999999999999999987777889999999999999988765 58999999
Q ss_pred EEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCC--CCCceEEE
Q 008260 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRS--LLNDLHIL 328 (572)
Q Consensus 251 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~--~~~~v~~y 328 (572)
++.++++||++||.......++++++||+.+++|+.++ ++|.+|.+|+++.++++||++||.+.... ..+++++|
T Consensus 385 ~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 461 (534)
T PHA03098 385 VVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS---PLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESY 461 (534)
T ss_pred EEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC---CCCccccCceEEEECCEEEEECCccCCCCCcccceEEEe
Confidence 99999999999998665556789999999999999987 68999999999999999999999864432 25679999
Q ss_pred ECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 329 DLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 329 d~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
|+.+++|+.++++ |.+|..+++++++ +.|||+||.+.....+++++||+.+++|+.+.
T Consensus 462 d~~~~~W~~~~~~---~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 462 NPVTNKWTELSSL---NFPRINASLCIFN-NKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred cCCCCceeeCCCC---CcccccceEEEEC-CEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 9999999999766 7889999998884 56999999887777889999999999999885
No 25
>PTZ00458 acyl CoA binding protein; Provisional
Probab=99.96 E-value=7.6e-30 Score=205.75 Aligned_cols=88 Identities=28% Similarity=0.539 Sum_probs=80.1
Q ss_pred HHHHHHHHhHhcccCCCCCccccccCCCChhhHHHHhhheeeeeeCCCCCCCCCCCChhhhHhHHHhhcCCCCCHHHHHH
Q 008260 13 PERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAMR 92 (572)
Q Consensus 13 ~~~F~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~lY~l~kQat~G~~~~~~p~~~~~~~~~k~~aW~~~~~~~~~~a~~ 92 (572)
.++|++|+++|+... ....+++|++|+|||||||||+|||++++|++||+++|+||+||++++|||++|||+
T Consensus 2 ~~~F~~A~~~v~~~~--------~~~~~s~d~~L~lYalyKQAt~G~c~~~~P~~~d~~~raKw~AW~~l~~ms~~eA~~ 73 (90)
T PTZ00458 2 ADLFEECVSFINSLP--------KTVNLSVEIKLDLYKYYKQSTVGNCNIKEPSMFKYQDRKKYEAWKSIENLNREDAKK 73 (90)
T ss_pred hHHHHHHHHHHHhCC--------CCCCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHH
Confidence 467999999996311 123689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcccc
Q 008260 93 LFVKILEEEDPGWYSR 108 (572)
Q Consensus 93 ~yi~~~~~~~p~~~~~ 108 (572)
+||++|+++.|.|...
T Consensus 74 ~YI~l~~~l~~~w~~~ 89 (90)
T PTZ00458 74 RYVEIVTELFPNWEKG 89 (90)
T ss_pred HHHHHHHHHhhccccC
Confidence 9999999999999764
No 26
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=1.6e-27 Score=257.41 Aligned_cols=188 Identities=18% Similarity=0.299 Sum_probs=165.2
Q ss_pred ceeeec----ceEEecccCCCCCCCCcceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCC
Q 008260 165 GSVVVY----DQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSP 240 (572)
Q Consensus 165 ~~~~~~----~~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~ 240 (572)
..++.| ++|..+++ +|.+|..+++++++++||++||..+ .+++++||+.+++|..++++
T Consensus 287 ~~v~~Ydp~~~~W~~~~~---m~~~r~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l----------- 349 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPP---MNSPRLYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSL----------- 349 (480)
T ss_pred CeEEEEECCCCEEEECCC---CCchhhcceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCCC-----------
Confidence 445566 58999985 8999999999999999999999643 26799999999999998876
Q ss_pred CCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCC
Q 008260 241 ALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRS 320 (572)
Q Consensus 241 ~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~ 320 (572)
|.+|.+|++++++++||++||.... .+.+++|||.+++|+.++ ++|.+|.+|++++++++|||+||.
T Consensus 350 --~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~~~~~~IYv~GG~----- 416 (480)
T PHA02790 350 --LKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGP---STYYPHYKSCALVFGRRLFLVGRN----- 416 (480)
T ss_pred --CCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCC---CCCCccccceEEEECCEEEEECCc-----
Confidence 5899999999999999999998643 367999999999999997 689999999999999999999983
Q ss_pred CCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 321 LLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 321 ~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
+++||+++++|+.++++ |.+|..++++++++ +|||+||.+.....+.+++||+.+++|+...
T Consensus 417 ----~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~~~-~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 417 ----AEFYCESSNTWTLIDDP---IYPRDNPELIIVDN-KLLLIGGFYRGSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred ----eEEecCCCCcEeEcCCC---CCCccccEEEEECC-EEEEECCcCCCcccceEEEEECCCCeEEecC
Confidence 68899999999999876 88999999999855 6999999876666788999999999998753
No 27
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=99.95 E-value=5.4e-29 Score=200.72 Aligned_cols=85 Identities=36% Similarity=0.635 Sum_probs=80.2
Q ss_pred hHHHHHHHHhHhcccCCCCCccccccCCCChhhHHHHhhheeeeeeCCCCCCCCCCCChhhhHhHHHhhcCCCCCHHHHH
Q 008260 12 YPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAM 91 (572)
Q Consensus 12 ~~~~F~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~lY~l~kQat~G~~~~~~p~~~~~~~~~k~~aW~~~~~~~~~~a~ 91 (572)
++++|++|+++|+ .+...+++|++|+|||||||||+|||+.++|++||+++++||+||++++|||++|||
T Consensus 1 ~~~~F~~A~~~v~----------~~~~~~~~~~~L~lYalyKQAt~G~~~~~~P~~~d~~~~~K~~AW~~l~~ms~~eA~ 70 (85)
T cd00435 1 LQEEFEAAAEKVK----------KLKTKPSNEEKLQLYSLYKQATVGDCNTERPGMFDLKGRAKWDAWNSLKGMSKEDAM 70 (85)
T ss_pred ChHHHHHHHHHHH----------hCCCCcCHHHHHHHHHHHHHhccCCCCCCCCCcccHhhHHHHHHHHHcCCCCHHHHH
Confidence 4689999999996 455789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcc
Q 008260 92 RLFVKILEEEDPGWY 106 (572)
Q Consensus 92 ~~yi~~~~~~~p~~~ 106 (572)
++||+++++++|.|.
T Consensus 71 ~~YV~~~~~l~~~~~ 85 (85)
T cd00435 71 KAYIAKVEELIAKYA 85 (85)
T ss_pred HHHHHHHHHHhhccC
Confidence 999999999999883
No 28
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.95 E-value=6.8e-28 Score=237.68 Aligned_cols=210 Identities=29% Similarity=0.578 Sum_probs=183.0
Q ss_pred ceEEecccCCCCCCCCcceeEEEEC-CEEEEEccCCCC------cccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCC
Q 008260 171 DQWIAPPISGQRPKARYEHGAAVVQ-DKMYIYGGNHNG------RYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALL 243 (572)
Q Consensus 171 ~~W~~~~~~g~~p~~R~~~s~~~~~-~~lyv~GG~~~~------~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p 243 (572)
+.|+.+... ..|.||.+|.++++. +.+|+|||.... ..+.|+|.||+.+++|.++.... .|
T Consensus 108 ~eWkk~~sp-n~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-----------~P 175 (521)
T KOG1230|consen 108 NEWKKVVSP-NAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-----------GP 175 (521)
T ss_pred cceeEeccC-CCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-----------CC
Confidence 599987643 578899999999996 899999996532 24689999999999999998654 58
Q ss_pred CCCcceeEEEeCCEEEEEeccCCC---CCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCC--
Q 008260 244 TPCAGHSLIPWENKLLSIAGHTKD---PSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDA-- 317 (572)
Q Consensus 244 ~~R~~hs~~~~~~~iyv~GG~~~~---~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~-- 317 (572)
.||++|-++++.++|++|||+... ..+.|+||+||+.+.+|+++.+.|.-|.||+++++.+. .+.|||+||+..
T Consensus 176 S~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~ 255 (521)
T KOG1230|consen 176 SPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQR 255 (521)
T ss_pred CCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhh
Confidence 999999999999999999998655 34689999999999999999998888999999999998 999999999853
Q ss_pred ------CCCCCCceEEEECCC-----CcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCC---------CCcCcCcEE
Q 008260 318 ------KRSLLNDLHILDLET-----MTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS---------HAACFNDLH 377 (572)
Q Consensus 318 ------~~~~~~~v~~yd~~t-----~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~---------~~~~~~~v~ 377 (572)
.+...+|+|.+++++ -.|+.+.+.|..|+||.++++++..+++-|.|||.- .+.++||+|
T Consensus 256 ~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy 335 (521)
T KOG1230|consen 256 VKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLY 335 (521)
T ss_pred hhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhh
Confidence 234578999999998 789999999999999999999999888899999943 256889999
Q ss_pred EEECCCCcEEeeccC
Q 008260 378 VLDLQTMEWSRPTQQ 392 (572)
Q Consensus 378 ~yd~~t~~W~~v~~~ 392 (572)
.||+..++|......
T Consensus 336 ~fdlt~nrW~~~qlq 350 (521)
T KOG1230|consen 336 FFDLTRNRWSEGQLQ 350 (521)
T ss_pred heecccchhhHhhhc
Confidence 999999999987543
No 29
>KOG0817 consensus Acyl-CoA-binding protein [Lipid transport and metabolism]
Probab=99.94 E-value=1.7e-27 Score=207.56 Aligned_cols=97 Identities=38% Similarity=0.623 Sum_probs=89.6
Q ss_pred CChHHHHHHHHhHhcccCCCCCccccccCCCChhhHHHHhhheeeeeeCCCCCCCCCCCChhhhHhHHHhhcCCCCCHHH
Q 008260 10 LAYPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTE 89 (572)
Q Consensus 10 ~~~~~~F~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~lY~l~kQat~G~~~~~~p~~~~~~~~~k~~aW~~~~~~~~~~ 89 (572)
..+.++|++|++.++ ++...+++|++|+|||||||||+|||++++|++||+++|+||+||++++|||++|
T Consensus 3 ~~~~~~Fe~a~~~~~----------~l~~~p~~ee~L~lYglyKQAt~G~~~~~kPg~~d~~~k~Kw~AW~~l~~~s~~e 72 (142)
T KOG0817|consen 3 ATLEAKFEAAAEAVK----------NLKKKPSNEELLKLYGLYKQATVGDCNTPKPGFFDEEGKAKWQAWNSLGGMSKEE 72 (142)
T ss_pred chHHHHHHHHHHHHH----------hcccCCCHHHHHHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHhcCCCCHHH
Confidence 456889999999995 5677799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCccccccCCCccc
Q 008260 90 AMRLFVKILEEEDPGWYSRASNSVAEP 116 (572)
Q Consensus 90 a~~~yi~~~~~~~p~~~~~~~~~~~~~ 116 (572)
||+.||+++++++|.|...+.......
T Consensus 73 A~~~Yv~~~~~l~~~~~~~~~~~~~~~ 99 (142)
T KOG0817|consen 73 AMEAYVEKVEELIPKYGAEAETEEKTE 99 (142)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCcc
Confidence 999999999999999999988764443
No 30
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=99.94 E-value=1.1e-27 Score=196.18 Aligned_cols=87 Identities=38% Similarity=0.674 Sum_probs=75.7
Q ss_pred hHHHHHHHHhHhcccCCCCCccccccCCCChhhHHHHhhheeeeeeCCCCCCCCCCCChhhhHhHHHhhcCCCCCHHHHH
Q 008260 12 YPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAM 91 (572)
Q Consensus 12 ~~~~F~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~lY~l~kQat~G~~~~~~p~~~~~~~~~k~~aW~~~~~~~~~~a~ 91 (572)
|+++|++|+++|+.... ...+++|++|+|||||||||+|||+.++|+++|+++++||+||++++|||++|||
T Consensus 1 Le~~F~~A~~~v~~~~~--------~~~~~~~~~L~LYalyKQAt~Gd~~~~~P~~~d~~~~~K~~AW~~l~gms~~eA~ 72 (87)
T PF00887_consen 1 LEEEFEAAVEFVSNLPK--------KSQLSNDDKLELYALYKQATHGDCDTPRPGFFDIEGRAKWDAWKALKGMSKEEAM 72 (87)
T ss_dssp HHHHHHHHHHHHHHSSS--------CSTS-HHHHHHHHHHHHHHHTSS--S-CTTTTCHHHHHHHHHHHTTTTTHHHHHH
T ss_pred CHHHHHHHHHHHHhccc--------cCCCCHHHHHHHHHHHHHHHhCCCcCCCCcchhHHHHHHHHHHHHccCCCHHHHH
Confidence 68999999999973221 1489999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcc
Q 008260 92 RLFVKILEEEDPGWY 106 (572)
Q Consensus 92 ~~yi~~~~~~~p~~~ 106 (572)
++||+++++++|.|.
T Consensus 73 ~~Yi~~v~~~~~~~~ 87 (87)
T PF00887_consen 73 REYIELVEELIPKYE 87 (87)
T ss_dssp HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998773
No 31
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=99.92 E-value=1.6e-25 Score=167.00 Aligned_cols=84 Identities=32% Similarity=0.527 Sum_probs=78.5
Q ss_pred hHHHHHHHHhHhcccCCCCCccccccCCCChhhHHHHhhheeeeeeCCCCCCCCCCCChhhhHhHHHhhcCCCCCHHHHH
Q 008260 12 YPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAM 91 (572)
Q Consensus 12 ~~~~F~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~lY~l~kQat~G~~~~~~p~~~~~~~~~k~~aW~~~~~~~~~~a~ 91 (572)
+..+|++|...|+ .+..+|++++.|+|||||||+|+||.+..+||+||++|++||+||..|+|.|+|+|.
T Consensus 2 ~s~~Feqa~~dV~----------~L~~kP~~d~LLkLYAL~KQ~s~GD~~~ekPG~~d~~gr~K~eAW~~LKGksqedA~ 71 (87)
T COG4281 2 LSTRFEQAQTDVK----------ELSEKPSNDELLKLYALFKQGSVGDNDGEKPGFFDIVGRYKYEAWAGLKGKSQEDAR 71 (87)
T ss_pred hhhHHHHHHHHHH----------HhccCCCcHHHHHHHHHHHhccccccCCCCCCccccccchhHHHHhhccCccHHHHH
Confidence 4578999999995 567789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCc
Q 008260 92 RLFVKILEEEDPGW 105 (572)
Q Consensus 92 ~~yi~~~~~~~p~~ 105 (572)
++||.+|++|..++
T Consensus 72 qeYialVeeLkak~ 85 (87)
T COG4281 72 QEYIALVEELKAKY 85 (87)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999997654
No 32
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.69 E-value=1.5e-17 Score=168.05 Aligned_cols=273 Identities=16% Similarity=0.222 Sum_probs=195.3
Q ss_pred ceecCCceeeecceEEecccCC-------CCCCCCcceeEEEECC--EEEEEccCCCCcccCcEEEEEcCCCcEEEeeec
Q 008260 159 VVSEGLGSVVVYDQWIAPPISG-------QRPKARYEHGAAVVQD--KMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAK 229 (572)
Q Consensus 159 ~~~~~~~~~~~~~~W~~~~~~g-------~~p~~R~~~s~~~~~~--~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~ 229 (572)
++..-+.+.+..-.|.++++.. ..|..|.||.++...+ .||++||+++-+.+.|+|.|+...+.|+.+..-
T Consensus 227 lf~q~i~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~ 306 (723)
T KOG2437|consen 227 LFNQYISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRD 306 (723)
T ss_pred HHhhhhhcccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecC
Confidence 3333344444456999887654 5788899999999864 899999999999999999999999999988653
Q ss_pred ccccCCCCCCCCCCCCCcceeEEEeC--CEEEEEeccCCC-----CCcceeEEEEECCCCceEEeccCC---CCCCCCcc
Q 008260 230 AVAESTESPSPALLTPCAGHSLIPWE--NKLLSIAGHTKD-----PSEIIQVKVFDLQTCSWSTLKTYG---KPPVSRGG 299 (572)
Q Consensus 230 ~~~~~~~~~~~~~p~~R~~hs~~~~~--~~iyv~GG~~~~-----~~~~~~v~~yd~~~~~W~~~~~~g---~~p~~R~~ 299 (572)
...|..|.+|-++... .++|+.|-+.+. .....++|+||..++.|..++-.. --|...+.
T Consensus 307 ----------t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfD 376 (723)
T KOG2437|consen 307 ----------TEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFD 376 (723)
T ss_pred ----------CCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeec
Confidence 2458899999999875 499999987654 234679999999999999996321 35888999
Q ss_pred eEEEEECCE--EEEEecCCC--CCCCCCceEEEECCCCcEEEeeCCC-------CCCCcccceEEEEE-cCCEEEEEeCC
Q 008260 300 QSVTLVGTS--LVIFGGEDA--KRSLLNDLHILDLETMTWDEIDAVG-------VPPSPRSDHAAAVH-AERYLLIFGGG 367 (572)
Q Consensus 300 ~~~~~~~~~--iyv~GG~~~--~~~~~~~v~~yd~~t~~W~~v~~~g-------~~p~~R~~~~~~~~-~~~~lyv~GG~ 367 (572)
|.+++.+++ ||||||..- +......+|.||.....|..+...- ..-..|.+|++-.+ +++++|+|||.
T Consensus 377 HqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq 456 (723)
T KOG2437|consen 377 HQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQ 456 (723)
T ss_pred ceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCc
Confidence 999999877 999999843 2234678999999999998765320 11245777777666 45689999998
Q ss_pred CCCcCcCcEEEEECCCCcEEeec-----cCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCC-------
Q 008260 368 SHAACFNDLHVLDLQTMEWSRPT-----QQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN------- 435 (572)
Q Consensus 368 ~~~~~~~~v~~yd~~t~~W~~v~-----~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~------- 435 (572)
.....++-.+.||+....=..++ .....|++.+...++.-.. .++|.+.=|..
T Consensus 457 ~s~~El~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~---------------~~~i~~~~G~~~~~~~~e 521 (723)
T KOG2437|consen 457 RSKTELNLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPE---------------LNEIHVLSGLSKDKEKRE 521 (723)
T ss_pred ccceEEeehhcceeccccchhhhccCcCccccCCCcchhhhcccCCC---------------CcchhhhcccchhccCcc
Confidence 87777777788876543322221 1112233333222222211 34677766653
Q ss_pred CCccCcEEEEeCCCCcccccc
Q 008260 436 GRYNNEVHVLKPSHKSTLSSK 456 (572)
Q Consensus 436 ~~~~~dv~~yd~~~~~~~~~~ 456 (572)
++..+.+|+|++.++.|.+..
T Consensus 522 ~~~rns~wi~~i~~~~w~cI~ 542 (723)
T KOG2437|consen 522 ENVRNSFWIYDIVRNSWSCIY 542 (723)
T ss_pred ccccCcEEEEEecccchhhHh
Confidence 235688999999998887653
No 33
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.67 E-value=3.9e-15 Score=146.29 Aligned_cols=238 Identities=21% Similarity=0.369 Sum_probs=170.9
Q ss_pred ceEEecccCCCCCCCCcceeEEEECCEEEEEccCCC-----CcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCC
Q 008260 171 DQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHN-----GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTP 245 (572)
Q Consensus 171 ~~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~~-----~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~ 245 (572)
..|+.+.. .+-.+|.+..+++++++||+|||... .+..+|+|+||+.+++|.++.... |..
T Consensus 70 k~W~~~a~--FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s------------P~g 135 (381)
T COG3055 70 KGWTKIAD--FPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS------------PTG 135 (381)
T ss_pred CCceEccc--CCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc------------ccc
Confidence 48999885 34578999999999999999999532 356899999999999999998875 677
Q ss_pred CcceeEEEeCC-EEEEEeccCCC---------------------------------CCcceeEEEEECCCCceEEeccCC
Q 008260 246 CAGHSLIPWEN-KLLSIAGHTKD---------------------------------PSEIIQVKVFDLQTCSWSTLKTYG 291 (572)
Q Consensus 246 R~~hs~~~~~~-~iyv~GG~~~~---------------------------------~~~~~~v~~yd~~~~~W~~~~~~g 291 (572)
..+++++.+++ +||++||.+.. ......|..|||.+++|+.+-.
T Consensus 136 l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~-- 213 (381)
T COG3055 136 LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE-- 213 (381)
T ss_pred cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCc--
Confidence 88999999977 99999998632 0115678999999999998852
Q ss_pred CCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECC--CCcEEEeeCCCCCCCcc-cceEEEE--EcCCEEEEEeC
Q 008260 292 KPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLE--TMTWDEIDAVGVPPSPR-SDHAAAV--HAERYLLIFGG 366 (572)
Q Consensus 292 ~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~--t~~W~~v~~~g~~p~~R-~~~~~~~--~~~~~lyv~GG 366 (572)
.+-.++++.+.+.-++++.++-|.-...--...++.++.. ..+|..+..+..+...- .+.+... ..++.++|.||
T Consensus 214 ~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GG 293 (381)
T COG3055 214 NPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGG 293 (381)
T ss_pred CcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecC
Confidence 2335677755555577899999985554335566676665 56899997662111111 1111111 12456888888
Q ss_pred CC---------------C----CcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCE
Q 008260 367 GS---------------H----AACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDV 427 (572)
Q Consensus 367 ~~---------------~----~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~ 427 (572)
.. + -.+.++||.|| .+.|+.+ |.+|.++.+..++..++ .
T Consensus 294 AnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~---GeLp~~l~YG~s~~~nn-----------------~ 351 (381)
T COG3055 294 ANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIV---GELPQGLAYGVSLSYNN-----------------K 351 (381)
T ss_pred CCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeee---cccCCCccceEEEecCC-----------------c
Confidence 42 1 13456799998 8899988 57999888877777766 7
Q ss_pred EEEEcCCC--CCccCcEEEEe
Q 008260 428 IVAFGGYN--GRYNNEVHVLK 446 (572)
Q Consensus 428 l~v~GG~~--~~~~~dv~~yd 446 (572)
+|++||.+ |.....|+.+.
T Consensus 352 vl~IGGE~~~Gka~~~v~~l~ 372 (381)
T COG3055 352 VLLIGGETSGGKATTRVYSLS 372 (381)
T ss_pred EEEEccccCCCeeeeeEEEEE
Confidence 99999975 34556666554
No 34
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.56 E-value=2.1e-13 Score=134.26 Aligned_cols=190 Identities=20% Similarity=0.298 Sum_probs=143.4
Q ss_pred CCCCCCcceeEEEECCEEEEEccCCCCcccCcEEEEEcCC--CcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEE
Q 008260 181 QRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRS--WAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKL 258 (572)
Q Consensus 181 ~~p~~R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~i 258 (572)
++|.+-..-+.+.+++.+||-=|..+ ...|.+|++. ..|++++..+ ..+|.+..++.++++|
T Consensus 32 dlPvg~KnG~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~Fp------------G~~rnqa~~a~~~~kL 95 (381)
T COG3055 32 DLPVGFKNGAGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIADFP------------GGARNQAVAAVIGGKL 95 (381)
T ss_pred CCCccccccccceecceEEEEeccCC----ccceehhhhcCCCCceEcccCC------------CcccccchheeeCCeE
Confidence 36666666688888999999766222 3678888865 5899999876 6889999999999999
Q ss_pred EEEeccCCC----CCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECC-EEEEEecCCC----------------
Q 008260 259 LSIAGHTKD----PSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGT-SLVIFGGEDA---------------- 317 (572)
Q Consensus 259 yv~GG~~~~----~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~-~iyv~GG~~~---------------- 317 (572)
|||||.... ....+++++||+.+++|+++.+. .|....++.++.+++ +||++||.+.
T Consensus 96 yvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~--sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d 173 (381)
T COG3055 96 YVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR--SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKD 173 (381)
T ss_pred EEeeccccCCCCCceEeeeeEEecCCCChhheeccc--cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhccc
Confidence 999998654 34688999999999999999874 677788888888877 9999999742
Q ss_pred -----------------CCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCC-CCcCcCcEEEE
Q 008260 318 -----------------KRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS-HAACFNDLHVL 379 (572)
Q Consensus 318 -----------------~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~y 379 (572)
...+...+..|||.+++|+.+-.. +-.++.+ ++++..++.+.++-|.- .......++++
T Consensus 174 ~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~--pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~ 250 (381)
T COG3055 174 KEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGEN--PFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQA 250 (381)
T ss_pred HHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcC--cccCccC-cceeecCCeEEEEcceecCCccccceeEE
Confidence 112346799999999999988644 2345555 55556667677777743 33344557777
Q ss_pred ECC--CCcEEeecc
Q 008260 380 DLQ--TMEWSRPTQ 391 (572)
Q Consensus 380 d~~--t~~W~~v~~ 391 (572)
+.. ..+|..+..
T Consensus 251 ~~~~~~~~w~~l~~ 264 (381)
T COG3055 251 DFGGDNLKWLKLSD 264 (381)
T ss_pred EeccCceeeeeccC
Confidence 765 568998853
No 35
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.50 E-value=1.8e-14 Score=146.03 Aligned_cols=213 Identities=19% Similarity=0.281 Sum_probs=160.0
Q ss_pred CCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCC--EEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCC
Q 008260 219 RSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN--KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVS 296 (572)
Q Consensus 219 ~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~--~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~ 296 (572)
-+..|.++...... -...-..|..|.+|.++...+ +||++||+++- +.+.++|.|+...+.|+.+...+..|..
T Consensus 237 y~~~W~~i~~~~~~---~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~-~~l~DFW~Y~v~e~~W~~iN~~t~~PG~ 312 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTK---GDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGT-QDLADFWAYSVKENQWTCINRDTEGPGA 312 (723)
T ss_pred ccccccccCchhhc---ccccccCccccCcceEEEeCCCcEEEEecCcccc-hhHHHHHhhcCCcceeEEeecCCCCCcc
Confidence 45678877654310 011123578899999999855 99999999987 7899999999999999999877778999
Q ss_pred CcceEEEEECC--EEEEEecCCCCC-----CCCCceEEEECCCCcEEEeeCCC---CCCCcccceEEEEEcCC-EEEEEe
Q 008260 297 RGGQSVTLVGT--SLVIFGGEDAKR-----SLLNDLHILDLETMTWDEIDAVG---VPPSPRSDHAAAVHAER-YLLIFG 365 (572)
Q Consensus 297 R~~~~~~~~~~--~iyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~v~~~g---~~p~~R~~~~~~~~~~~-~lyv~G 365 (572)
|.+|.++.... +||+.|-+-+.. ....|+|+||.+++.|..+.-.. --|..-+.|.+++..++ .|||||
T Consensus 313 RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfG 392 (723)
T KOG2437|consen 313 RSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFG 392 (723)
T ss_pred hhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEec
Confidence 99999999855 999999874322 23579999999999999886431 13677899999998653 599999
Q ss_pred CCCC---CcCcCcEEEEECCCCcEEeeccC----C---CCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCC
Q 008260 366 GGSH---AACFNDLHVLDLQTMEWSRPTQQ----G---EIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN 435 (572)
Q Consensus 366 G~~~---~~~~~~v~~yd~~t~~W~~v~~~----g---~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~ 435 (572)
|..- ...+..+|.||.....|..+... + +....|.+|++-...+ .+.+|+|||..
T Consensus 393 Gr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~---------------n~~ly~fggq~ 457 (723)
T KOG2437|consen 393 GRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSK---------------NRCLYVFGGQR 457 (723)
T ss_pred CeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCC---------------CCeEEeccCcc
Confidence 9642 24567899999999999886321 1 1234588888887776 56899999976
Q ss_pred CC-ccCcEEEEeCCCC
Q 008260 436 GR-YNNEVHVLKPSHK 450 (572)
Q Consensus 436 ~~-~~~dv~~yd~~~~ 450 (572)
.. .++-.++|++...
T Consensus 458 s~~El~L~f~y~I~~E 473 (723)
T KOG2437|consen 458 SKTELNLFFSYDIDSE 473 (723)
T ss_pred cceEEeehhcceeccc
Confidence 53 4455566665443
No 36
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=9.7e-11 Score=113.07 Aligned_cols=96 Identities=23% Similarity=0.366 Sum_probs=85.5
Q ss_pred CCCChHHHHHHHHhHhcccCCCCCccccccCCCChhhHHHHhhheeeeeeCCCCCC-CC--CCCChhhhHhHHHhhcCCC
Q 008260 8 SGLAYPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVP-KP--SSWSPVEQSKWKSWQGLGN 84 (572)
Q Consensus 8 ~~~~~~~~F~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~lY~l~kQat~G~~~~~-~p--~~~~~~~~~k~~aW~~~~~ 84 (572)
-+.+|+|.+..|+.|.+.+.+ .+.++++|++|+|-||.||+..|+.|+. .| |++|++|+.+..+|..|+.
T Consensus 28 wGf~LeElY~LA~~fyKe~~G-------Ka~h~~YEd~lKLial~kQv~~Gp~n~d~~p~~G~lDv~GnDr~~~W~~LG~ 100 (469)
T KOG3878|consen 28 WGFPLEELYRLAFTFYKENSG-------KAIHLSYEDNLKLIALKKQVALGPFNTDRAPALGVLDVIGNDRQQHWQLLGE 100 (469)
T ss_pred hCCCHHHHHHHHHHHHHhccC-------CccCCChhhhhhhhhhHhhhhcCCCCcccCcccceeecccChHHHHHHHHhc
Confidence 367899999999999985443 3778999999999999999999999965 35 7899999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccccc
Q 008260 85 MATTEAMRLFVKILEEEDPGWYSRAS 110 (572)
Q Consensus 85 ~~~~~a~~~yi~~~~~~~p~~~~~~~ 110 (572)
||+++||..||.+|+++++.|..-..
T Consensus 101 ~sre~AM~~FV~Lldr~C~~F~~yia 126 (469)
T KOG3878|consen 101 ISREQAMEGFVDLLDRMCSAFRPYIA 126 (469)
T ss_pred ccHHHHHHHHHHHHHhcchhhhhHHH
Confidence 99999999999999999998866543
No 37
>PF13964 Kelch_6: Kelch motif
Probab=99.08 E-value=2.4e-10 Score=83.29 Aligned_cols=46 Identities=35% Similarity=0.751 Sum_probs=42.6
Q ss_pred CCcceeEEEECCEEEEEccCCC-CcccCcEEEEEcCCCcEEEeeecc
Q 008260 185 ARYEHGAAVVQDKMYIYGGNHN-GRYLSDMHILDLRSWAWSKIQAKA 230 (572)
Q Consensus 185 ~R~~~s~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~ 230 (572)
||.+|++++++++|||+||..+ ...++++++||+.+++|+++++|+
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 6899999999999999999877 788999999999999999998763
No 38
>PF13964 Kelch_6: Kelch motif
Probab=99.06 E-value=4.2e-10 Score=81.94 Aligned_cols=50 Identities=38% Similarity=0.713 Sum_probs=45.3
Q ss_pred CCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcc
Q 008260 296 SRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPR 348 (572)
Q Consensus 296 ~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R 348 (572)
+|.+|++++++++|||+||.......++++++||+++++|++++++ |.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~m---p~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPM---PTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCC---CCCC
Confidence 6899999999999999999988556799999999999999999876 7776
No 39
>PLN02772 guanylate kinase
Probab=98.98 E-value=3.4e-09 Score=108.85 Aligned_cols=90 Identities=21% Similarity=0.349 Sum_probs=79.6
Q ss_pred CCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcC
Q 008260 293 PPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAAC 372 (572)
Q Consensus 293 ~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~ 372 (572)
-..++.+|+++.+++++||+||.++.....+.+++||..+.+|......|..|.||.+|+++++++++|+|+++.+...
T Consensus 21 ~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~- 99 (398)
T PLN02772 21 GVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD- 99 (398)
T ss_pred cCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc-
Confidence 4568999999999999999999888665689999999999999999999999999999999999888999999865543
Q ss_pred cCcEEEEECCCC
Q 008260 373 FNDLHVLDLQTM 384 (572)
Q Consensus 373 ~~~v~~yd~~t~ 384 (572)
.++|.+...|.
T Consensus 100 -~~~w~l~~~t~ 110 (398)
T PLN02772 100 -DSIWFLEVDTP 110 (398)
T ss_pred -cceEEEEcCCH
Confidence 77998887653
No 40
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.86 E-value=4.4e-09 Score=75.44 Aligned_cols=45 Identities=24% Similarity=0.521 Sum_probs=41.7
Q ss_pred CCcceeEEEECCEEEEEccCCC-CcccCcEEEEEcCCCcEEEeeec
Q 008260 185 ARYEHGAAVVQDKMYIYGGNHN-GRYLSDMHILDLRSWAWSKIQAK 229 (572)
Q Consensus 185 ~R~~~s~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~ 229 (572)
||.+|++++++++|||+||... ...++++++||+.+++|+.+++|
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 6899999999999999999877 78899999999999999999987
No 41
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.83 E-value=7.9e-09 Score=74.84 Aligned_cols=47 Identities=40% Similarity=0.809 Sum_probs=41.8
Q ss_pred CCEEEEEeCCC--CCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEE
Q 008260 358 ERYLLIFGGGS--HAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTI 407 (572)
Q Consensus 358 ~~~lyv~GG~~--~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~ 407 (572)
+++||||||.+ ....++++|+||+.+++|+++ +++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 35799999988 678899999999999999998 568999999999864
No 42
>PLN02772 guanylate kinase
Probab=98.81 E-value=2.7e-08 Score=102.28 Aligned_cols=88 Identities=18% Similarity=0.328 Sum_probs=77.5
Q ss_pred CCCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCC
Q 008260 243 LTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSL 321 (572)
Q Consensus 243 p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~ 321 (572)
..++.+|+++.+++++||+||.+......+.+++||+.+++|......|..|.+|.+|+++++ +++|+|+++-....
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~-- 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD-- 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--
Confidence 568999999999999999999887655789999999999999999999999999999999999 67999998765543
Q ss_pred CCceEEEECCCC
Q 008260 322 LNDLHILDLETM 333 (572)
Q Consensus 322 ~~~v~~yd~~t~ 333 (572)
.++|.+..+|.
T Consensus 100 -~~~w~l~~~t~ 110 (398)
T PLN02772 100 -DSIWFLEVDTP 110 (398)
T ss_pred -cceEEEEcCCH
Confidence 67888887764
No 43
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.79 E-value=1.2e-08 Score=73.87 Aligned_cols=48 Identities=46% Similarity=0.778 Sum_probs=41.6
Q ss_pred CCEEEEEecCC-CCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEE
Q 008260 306 GTSLVIFGGED-AKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVH 356 (572)
Q Consensus 306 ~~~iyv~GG~~-~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~ 356 (572)
+++||||||.+ .....++++|+||+.+.+|+++. ..|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence 57999999998 44567899999999999999994 45999999999874
No 44
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.79 E-value=1.2e-08 Score=73.19 Aligned_cols=45 Identities=29% Similarity=0.508 Sum_probs=41.7
Q ss_pred CCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEecc
Q 008260 245 PCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (572)
Q Consensus 245 ~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 289 (572)
||.+|++++++++||++||.......++++++||+.+++|+.+++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 689999999999999999999866899999999999999999973
No 45
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.78 E-value=1.3e-08 Score=73.66 Aligned_cols=45 Identities=29% Similarity=0.714 Sum_probs=40.9
Q ss_pred CCcceeEEEECCEEEEEccC---CCCcccCcEEEEEcCCCcEEEeeec
Q 008260 185 ARYEHGAAVVQDKMYIYGGN---HNGRYLSDMHILDLRSWAWSKIQAK 229 (572)
Q Consensus 185 ~R~~~s~~~~~~~lyv~GG~---~~~~~~~~v~~yd~~t~~W~~~~~~ 229 (572)
||++|++++++++|||+||. ......+++++||+.+++|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 69999999999999999998 4567889999999999999998765
No 46
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.77 E-value=1.8e-08 Score=72.92 Aligned_cols=46 Identities=33% Similarity=0.590 Sum_probs=41.0
Q ss_pred CCcceEEEEECCEEEEEecC--CCCCCCCCceEEEECCCCcEEEeeCC
Q 008260 296 SRGGQSVTLVGTSLVIFGGE--DAKRSLLNDLHILDLETMTWDEIDAV 341 (572)
Q Consensus 296 ~R~~~~~~~~~~~iyv~GG~--~~~~~~~~~v~~yd~~t~~W~~v~~~ 341 (572)
+|.+|++++++++||||||+ .......+++++||+++.+|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 68999999999999999999 44445789999999999999999765
No 47
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.74 E-value=1.1e-08 Score=74.01 Aligned_cols=46 Identities=41% Similarity=0.726 Sum_probs=31.7
Q ss_pred CCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCC
Q 008260 296 SRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAV 341 (572)
Q Consensus 296 ~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~ 341 (572)
||.+|+++.+ +++||||||.+.....++++|+||+++++|++++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCC
Confidence 6999999999 589999999988766799999999999999999554
No 48
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.65 E-value=2.9e-08 Score=71.87 Aligned_cols=44 Identities=27% Similarity=0.576 Sum_probs=31.1
Q ss_pred CCcceeEEEe-CCEEEEEeccCCCCCcceeEEEEECCCCceEEec
Q 008260 245 PCAGHSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLK 288 (572)
Q Consensus 245 ~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 288 (572)
||++|+++.+ +++||||||.+.....++++++||+.+++|++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~ 45 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP 45 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC
Confidence 6999999998 5899999999987679999999999999999995
No 49
>PF13854 Kelch_5: Kelch motif
Probab=98.60 E-value=9.7e-08 Score=66.57 Aligned_cols=40 Identities=45% Similarity=0.855 Sum_probs=35.9
Q ss_pred CCCCCcceeEEEECCEEEEEccCC--CCcccCcEEEEEcCCC
Q 008260 182 RPKARYEHGAAVVQDKMYIYGGNH--NGRYLSDMHILDLRSW 221 (572)
Q Consensus 182 ~p~~R~~~s~~~~~~~lyv~GG~~--~~~~~~~v~~yd~~t~ 221 (572)
.|.+|.+|++++++++|||+||.. ....++|+|+||+.++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 478999999999999999999987 4778999999998763
No 50
>PF13854 Kelch_5: Kelch motif
Probab=98.51 E-value=2.4e-07 Score=64.56 Aligned_cols=41 Identities=41% Similarity=0.671 Sum_probs=36.3
Q ss_pred CCCCCcceEEEEECCEEEEEecCCC-CCCCCCceEEEECCCC
Q 008260 293 PPVSRGGQSVTLVGTSLVIFGGEDA-KRSLLNDLHILDLETM 333 (572)
Q Consensus 293 ~p~~R~~~~~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~t~ 333 (572)
.|.+|.+|++++++++||||||.+. ....++++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4889999999999999999999984 5567999999998763
No 51
>smart00612 Kelch Kelch domain.
Probab=98.38 E-value=4.3e-07 Score=64.68 Aligned_cols=47 Identities=26% Similarity=0.557 Sum_probs=40.8
Q ss_pred EEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCC
Q 008260 197 KMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN 256 (572)
Q Consensus 197 ~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~ 256 (572)
+|||+||......++++++||+.+++|+.++++ +.+|..|+++.+++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-------------~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSM-------------PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCC-------------CCccccceEEEeCC
Confidence 489999987667789999999999999998866 58999999988764
No 52
>smart00612 Kelch Kelch domain.
Probab=98.35 E-value=7.2e-07 Score=63.47 Aligned_cols=46 Identities=28% Similarity=0.556 Sum_probs=40.6
Q ss_pred EEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEEC
Q 008260 360 YLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIG 408 (572)
Q Consensus 360 ~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~ 408 (572)
+|||+||......++++++||+.+++|+.++ .+|.+|..|++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVIN 46 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCC---CCCCccccceEEEeC
Confidence 3899999877677899999999999999886 589999999998875
No 53
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.30 E-value=6.6e-05 Score=72.57 Aligned_cols=165 Identities=18% Similarity=0.250 Sum_probs=99.0
Q ss_pred EEEEEeccCCCCCcceeEEEEECCCCc--------eEEeccCCCCCCCCcceEEEEE----CCEEEEEecCCC----CC-
Q 008260 257 KLLSIAGHTKDPSEIIQVKVFDLQTCS--------WSTLKTYGKPPVSRGGQSVTLV----GTSLVIFGGEDA----KR- 319 (572)
Q Consensus 257 ~iyv~GG~~~~~~~~~~v~~yd~~~~~--------W~~~~~~g~~p~~R~~~~~~~~----~~~iyv~GG~~~----~~- 319 (572)
..++.||.+.+.+..+.+++....+.. .++....|+.|.+|++|++.++ +..+++|||..- .+
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 466779999887888888888765432 2223445789999999998887 235889999731 10
Q ss_pred --------CCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCC--cCcCcEEEEECCCCcEEee
Q 008260 320 --------SLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHA--ACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 320 --------~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~--~~~~~v~~yd~~t~~W~~v 389 (572)
.....|+.+|++-.-.+.-. .....-..++|.+..-+ +.+|++||..-. ..-..++++..+
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~-lpEl~dG~SFHvslar~-D~VYilGGHsl~sd~Rpp~l~rlkVd------- 190 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHT-LPELQDGQSFHVSLARN-DCVYILGGHSLESDSRPPRLYRLKVD------- 190 (337)
T ss_pred hhhcceeccCCCeEEEEecccccccccc-chhhcCCeEEEEEEecC-ceEEEEccEEccCCCCCCcEEEEEEe-------
Confidence 12345778888766554432 11234566778777764 579999996432 222335554321
Q ss_pred ccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCC
Q 008260 390 TQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR 437 (572)
Q Consensus 390 ~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~ 437 (572)
++...-..++.++.+.+-|-..++.... .+..+|+|||...
T Consensus 191 -----LllGSP~vsC~vl~~glSisSAIvt~~~--~~e~iIlGGY~sd 231 (337)
T PF03089_consen 191 -----LLLGSPAVSCTVLQGGLSISSAIVTQTG--PHEYIILGGYQSD 231 (337)
T ss_pred -----ecCCCceeEEEECCCCceEeeeeEeecC--CCceEEEeccccc
Confidence 3333333455555553333222222222 3589999999653
No 54
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.26 E-value=6.6e-05 Score=73.11 Aligned_cols=147 Identities=16% Similarity=0.234 Sum_probs=95.0
Q ss_pred EEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCC----CceEEec
Q 008260 213 MHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQT----CSWSTLK 288 (572)
Q Consensus 213 v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~----~~W~~~~ 288 (572)
-..||+.+++++.+.... -.=+++|+ ..-++++++.||.... ...+..|++.. ..|.+..
T Consensus 48 s~~yD~~tn~~rpl~v~t------------d~FCSgg~-~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~ 111 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQT------------DTFCSGGA-FLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESP 111 (243)
T ss_pred EEEEecCCCcEEeccCCC------------CCcccCcC-CCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECc
Confidence 467999999999886542 23344443 2348899999998653 45677888875 6798886
Q ss_pred cCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCC-----CcEEEeeCCC-CCCCcccceEEEEEcCCEE
Q 008260 289 TYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLET-----MTWDEIDAVG-VPPSPRSDHAAAVHAERYL 361 (572)
Q Consensus 289 ~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t-----~~W~~v~~~g-~~p~~R~~~~~~~~~~~~l 361 (572)
. .|..+|-+.+++.+ +++++|+||.... ..+.+.... ..|..+.... ..+..-+- -+.+..++.|
T Consensus 112 ~--~m~~~RWYpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP-~~~llPdG~l 183 (243)
T PF07250_consen 112 N--DMQSGRWYPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYP-FVHLLPDGNL 183 (243)
T ss_pred c--cccCCCccccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCccccCc-eEEEcCCCCE
Confidence 4 48899999998888 7899999998622 223333211 1222222110 11222222 3344556679
Q ss_pred EEEeCCCCCcCcCcEEEEECCCCcE-Eeec
Q 008260 362 LIFGGGSHAACFNDLHVLDLQTMEW-SRPT 390 (572)
Q Consensus 362 yv~GG~~~~~~~~~v~~yd~~t~~W-~~v~ 390 (572)
|+++. ++-.+||..++++ ..++
T Consensus 184 Fi~an-------~~s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 184 FIFAN-------RGSIIYDYKTNTVVRTLP 206 (243)
T ss_pred EEEEc-------CCcEEEeCCCCeEEeeCC
Confidence 99998 4567899999987 5554
No 55
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.93 E-value=0.0028 Score=61.63 Aligned_cols=163 Identities=16% Similarity=0.120 Sum_probs=94.2
Q ss_pred EEEEccCCCC-cccCcEEEEEcCCCc---EEEeeecccccCCCCCCCCCCCCCcceeEEEe----CCEEEEEeccCCCC-
Q 008260 198 MYIYGGNHNG-RYLSDMHILDLRSWA---WSKIQAKAVAESTESPSPALLTPCAGHSLIPW----ENKLLSIAGHTKDP- 268 (572)
Q Consensus 198 lyv~GG~~~~-~~~~~v~~yd~~t~~---W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~----~~~iyv~GG~~~~~- 268 (572)
.+|.||...+ ...+.+|+....... =..+.... .......|.+|++|++.++ ..-+++|||..--+
T Consensus 41 YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~E-----KeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~ 115 (337)
T PF03089_consen 41 YLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQE-----KELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPP 115 (337)
T ss_pred EEecCCcCCCcccccceEEEEeecCCCCceeEEEEec-----ceecCCCCcccccceEEEEEECCcEEEEEECCcccCCc
Confidence 5566886643 456678888765433 21221111 1123567899999999877 23588899975321
Q ss_pred ------------CcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCC-CCCceEEEECC---C
Q 008260 269 ------------SEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRS-LLNDLHILDLE---T 332 (572)
Q Consensus 269 ------------~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~-~~~~v~~yd~~---t 332 (572)
.....|+.+|++-.-.+..... .+..+.+.|.+..-++.+|++||..-... -...++++..+ .
T Consensus 116 ~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lp-El~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllG 194 (337)
T PF03089_consen 116 GQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLP-ELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLG 194 (337)
T ss_pred cccchhhcceeccCCCeEEEEeccccccccccch-hhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCC
Confidence 1234678888887766555322 56677888888888999999999843321 12345555322 1
Q ss_pred CcEEEeeCCCCCCCcccceEEEE--EcCCEEEEEeCCCC
Q 008260 333 MTWDEIDAVGVPPSPRSDHAAAV--HAERYLLIFGGGSH 369 (572)
Q Consensus 333 ~~W~~v~~~g~~p~~R~~~~~~~--~~~~~lyv~GG~~~ 369 (572)
.-+-....+ +......++.+ .+.+..+|+||+..
T Consensus 195 SP~vsC~vl---~~glSisSAIvt~~~~~e~iIlGGY~s 230 (337)
T PF03089_consen 195 SPAVSCTVL---QGGLSISSAIVTQTGPHEYIILGGYQS 230 (337)
T ss_pred CceeEEEEC---CCCceEeeeeEeecCCCceEEEecccc
Confidence 112222222 22333323322 23456889999753
No 56
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.70 E-value=0.016 Score=56.51 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=92.0
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeC-----CEEEEEeccCCCCCcceeEEEEECCCCceE
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWE-----NKLLSIAGHTKDPSEIIQVKVFDLQTCSWS 285 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~-----~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 285 (572)
..++++||.|++|..++.... +..-..+. .....++ =||..+...... .....+++|+..++.|+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~--------~~~~~~~~-~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~~Wr 83 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKS--------RRSNKESD-TYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSNSWR 83 (230)
T ss_pred CcEEEECCCCCCEEecCCCCC--------cccccccc-eEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCCCcc
Confidence 479999999999999975320 00001111 1111122 256666543211 23457899999999999
Q ss_pred EeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEE-eeCCCCCCCccc----ceEEEEEcCCE
Q 008260 286 TLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDE-IDAVGVPPSPRS----DHAAAVHAERY 360 (572)
Q Consensus 286 ~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~-v~~~g~~p~~R~----~~~~~~~~~~~ 360 (572)
.+... .+........+.+++.||-+.-..... ....+..||+.+.+|.. ++. |..+. ....+.+. ++
T Consensus 84 ~~~~~--~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~~----P~~~~~~~~~~~L~~~~-G~ 155 (230)
T TIGR01640 84 TIECS--PPHHPLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIPL----PCGNSDSVDYLSLINYK-GK 155 (230)
T ss_pred ccccC--CCCccccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeeec----CccccccccceEEEEEC-CE
Confidence 98732 222122223667899999887543211 11269999999999995 542 32221 23344444 56
Q ss_pred EEEEeCCCCCcCcCcEEEEE-CCCCcEEee
Q 008260 361 LLIFGGGSHAACFNDLHVLD-LQTMEWSRP 389 (572)
Q Consensus 361 lyv~GG~~~~~~~~~v~~yd-~~t~~W~~v 389 (572)
|.++....... .-+||+++ -...+|++.
T Consensus 156 L~~v~~~~~~~-~~~IWvl~d~~~~~W~k~ 184 (230)
T TIGR01640 156 LAVLKQKKDTN-NFDLWVLNDAGKQEWSKL 184 (230)
T ss_pred EEEEEecCCCC-cEEEEEECCCCCCceeEE
Confidence 77766532211 14788886 446679985
No 57
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.68 E-value=0.0013 Score=64.08 Aligned_cols=86 Identities=20% Similarity=0.229 Sum_probs=64.5
Q ss_pred EEEEECCCCceEEeccCCCCCCCCcceEEEE-ECCEEEEEecCCCCCCCCCceEEEECCC----CcEEEeeCCCCCCCcc
Q 008260 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKRSLLNDLHILDLET----MTWDEIDAVGVPPSPR 348 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t----~~W~~v~~~g~~p~~R 348 (572)
--.||+.+++++.+.. ..--.+.+-+. -++++++.||.... ...+-.|++.+ ..|.+.... +-.+|
T Consensus 48 s~~yD~~tn~~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~--m~~~R 118 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTV----QTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPND--MQSGR 118 (243)
T ss_pred EEEEecCCCcEEeccC----CCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECccc--ccCCC
Confidence 4569999999998863 23333333333 37899999998653 34677888765 679887643 57899
Q ss_pred cceEEEEEcCCEEEEEeCCC
Q 008260 349 SDHAAAVHAERYLLIFGGGS 368 (572)
Q Consensus 349 ~~~~~~~~~~~~lyv~GG~~ 368 (572)
...++..+.|+.++|+||..
T Consensus 119 WYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred ccccceECCCCCEEEEeCcC
Confidence 99999999999999999976
No 58
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.29 E-value=0.028 Score=54.78 Aligned_cols=153 Identities=14% Similarity=0.160 Sum_probs=90.5
Q ss_pred cCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEE-ec
Q 008260 210 LSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWST-LK 288 (572)
Q Consensus 210 ~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~ 288 (572)
...+++|+..+++|+.+.... +........+.++|.||-+.-.... .....|..||+.+.+|.. ++
T Consensus 69 ~~~~~Vys~~~~~Wr~~~~~~------------~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~ 135 (230)
T TIGR01640 69 QSEHQVYTLGSNSWRTIECSP------------PHHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIP 135 (230)
T ss_pred CccEEEEEeCCCCccccccCC------------CCccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeee
Confidence 357899999999999986321 1111112266789999998754321 122379999999999995 64
Q ss_pred cCCCCCCCCc----ceEEEEECCEEEEEecCCCCCCCCCceEEEE-CCCCcEEEeeCCCCCCCcccc---eEEEEEcCCE
Q 008260 289 TYGKPPVSRG----GQSVTLVGTSLVIFGGEDAKRSLLNDLHILD-LETMTWDEIDAVGVPPSPRSD---HAAAVHAERY 360 (572)
Q Consensus 289 ~~g~~p~~R~----~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd-~~t~~W~~v~~~g~~p~~R~~---~~~~~~~~~~ 360 (572)
+|..+. ....+.++++|.++....... .-++|+.+ -....|++.-....++.++.. ....+..++.
T Consensus 136 ----~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~--~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~ 209 (230)
T TIGR01640 136 ----LPCGNSDSVDYLSLINYKGKLAVLKQKKDTN--NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGE 209 (230)
T ss_pred ----cCccccccccceEEEEECCEEEEEEecCCCC--cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCE
Confidence 343332 334566689988876643221 23678775 446679886544211222221 2333444566
Q ss_pred EEEEeCCCCCcCcCcEEEEECCCC
Q 008260 361 LLIFGGGSHAACFNDLHVLDLQTM 384 (572)
Q Consensus 361 lyv~GG~~~~~~~~~v~~yd~~t~ 384 (572)
|++.-... ...-+..||+.++
T Consensus 210 I~~~~~~~---~~~~~~~y~~~~~ 230 (230)
T TIGR01640 210 IVLCCEDE---NPFYIFYYNVGEN 230 (230)
T ss_pred EEEEeCCC---CceEEEEEeccCC
Confidence 77766421 0113888998764
No 59
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.53 E-value=0.098 Score=54.28 Aligned_cols=118 Identities=17% Similarity=0.216 Sum_probs=76.2
Q ss_pred eCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCC----CceEEE-
Q 008260 254 WENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLL----NDLHIL- 328 (572)
Q Consensus 254 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~----~~v~~y- 328 (572)
.+++|+..+.. ..+.+||+.+..-...+ .++.+...-.++.++++||++.......... ..++.+
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~ 144 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALV 144 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEec
Confidence 48899999665 24789999998877665 4556666667777899999998764332110 134444
Q ss_pred -E--------CCCCcEEEeeCCCCCCCcccc-------eEEEEEcCCEEEE-EeCCCCCcCcCcEEEEECCCCcEEee
Q 008260 329 -D--------LETMTWDEIDAVGVPPSPRSD-------HAAAVHAERYLLI-FGGGSHAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 329 -d--------~~t~~W~~v~~~g~~p~~R~~-------~~~~~~~~~~lyv-~GG~~~~~~~~~v~~yd~~t~~W~~v 389 (572)
+ ...-.|+.+++. |..+.. .+-+++++..|+| .-|.. ...|.||+.+.+|+++
T Consensus 145 ~~~~~~~~~~~~~w~W~~LP~P---Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 145 YRPPPDDPSPEESWSWRSLPPP---PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKH 214 (342)
T ss_pred cccccccccCCCcceEEcCCCC---CccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeec
Confidence 3 223467776542 443322 2334445677888 43321 3489999999999998
No 60
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.02 E-value=1.6 Score=42.17 Aligned_cols=152 Identities=20% Similarity=0.236 Sum_probs=89.2
Q ss_pred EEEECCEEEEEccCCCCcccCcEEEEEcCCCc--EEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCC
Q 008260 191 AAVVQDKMYIYGGNHNGRYLSDMHILDLRSWA--WSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDP 268 (572)
Q Consensus 191 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~ 268 (572)
.+..++.+|+..+ ...++++|..+.+ |+.-.. .+........++.||+..+.
T Consensus 32 ~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~~----------------~~~~~~~~~~~~~v~v~~~~---- 85 (238)
T PF13360_consen 32 AVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDLP----------------GPISGAPVVDGGRVYVGTSD---- 85 (238)
T ss_dssp EEEETTEEEEEET------TSEEEEEETTTSEEEEEEECS----------------SCGGSGEEEETTEEEEEETT----
T ss_pred EEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeecc----------------ccccceeeecccccccccce----
Confidence 3447899998843 3579999998765 665431 11222246678999888622
Q ss_pred CcceeEEEEECCCC--ceEE-eccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCc--EEEeeCCCC
Q 008260 269 SEIIQVKVFDLQTC--SWST-LKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT--WDEIDAVGV 343 (572)
Q Consensus 269 ~~~~~v~~yd~~~~--~W~~-~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~v~~~g~ 343 (572)
+.++.+|..+. .|+. .......+ .+......+.++.+|+... ...+..+|+++.+ |+.....
T Consensus 86 ---~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~-- 152 (238)
T PF13360_consen 86 ---GSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVGE-- 152 (238)
T ss_dssp ---SEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESST--
T ss_pred ---eeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecCC--
Confidence 27999997765 4884 43211111 2333445555777776653 3569999988764 7765432
Q ss_pred CCCccc-------ceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc--EEe
Q 008260 344 PPSPRS-------DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME--WSR 388 (572)
Q Consensus 344 ~p~~R~-------~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~ 388 (572)
+.... ..+..++.++.+|+..+.. .+..+|.++.+ |+.
T Consensus 153 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~ 199 (238)
T PF13360_consen 153 -PRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLATGEKLWSK 199 (238)
T ss_dssp -T-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETTTTEEEEEE
T ss_pred -CCCCcceeeecccccceEEECCEEEEEcCCC------eEEEEECCCCCEEEEe
Confidence 11111 1233444455788877643 26777999887 843
No 61
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.72 E-value=0.27 Score=50.97 Aligned_cols=120 Identities=16% Similarity=0.217 Sum_probs=75.8
Q ss_pred EECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcc-
Q 008260 193 VVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEI- 271 (572)
Q Consensus 193 ~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~- 271 (572)
+.+++|+.++.. ..+.+||..+..-...+.+ ..+...-.++.++++||++..........
T Consensus 74 l~gskIv~~d~~------~~t~vyDt~t~av~~~P~l-------------~~pk~~pisv~VG~~LY~m~~~~~~~~~~~ 134 (342)
T PF07893_consen 74 LHGSKIVAVDQS------GRTLVYDTDTRAVATGPRL-------------HSPKRCPISVSVGDKLYAMDRSPFPEPAGR 134 (342)
T ss_pred ecCCeEEEEcCC------CCeEEEECCCCeEeccCCC-------------CCCCcceEEEEeCCeEEEeeccCccccccC
Confidence 358999999763 4589999999877765554 34444556777799999998775431110
Q ss_pred ---eeEEEE--EC--------CCCceEEeccCCCCCCCCcc-------eEEEEE-CCEEEE-EecCCCCCCCCCceEEEE
Q 008260 272 ---IQVKVF--DL--------QTCSWSTLKTYGKPPVSRGG-------QSVTLV-GTSLVI-FGGEDAKRSLLNDLHILD 329 (572)
Q Consensus 272 ---~~v~~y--d~--------~~~~W~~~~~~g~~p~~R~~-------~~~~~~-~~~iyv-~GG~~~~~~~~~~v~~yd 329 (572)
..++.+ ++ ..-.|+.+++ +|..+.. .+-+++ +..|+| .-|.. ...+.||
T Consensus 135 ~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfD 205 (342)
T PF07893_consen 135 PDFPCFEALVYRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFD 205 (342)
T ss_pred ccceeEEEeccccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEE
Confidence 144444 42 2336777753 3443332 233444 668888 33321 2489999
Q ss_pred CCCCcEEEeeC
Q 008260 330 LETMTWDEIDA 340 (572)
Q Consensus 330 ~~t~~W~~v~~ 340 (572)
+.+.+|+.+-.
T Consensus 206 t~~~~W~~~Gd 216 (342)
T PF07893_consen 206 TESHEWRKHGD 216 (342)
T ss_pred cCCcceeeccc
Confidence 99999999943
No 62
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.54 E-value=2.4 Score=41.50 Aligned_cols=196 Identities=13% Similarity=0.072 Sum_probs=105.4
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE--eCCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP--WENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~--~~~~iyv~GG~~~~~~~~~ 272 (572)
++.||+..- .-..++++|+.+..-..+.. .. -.+++. -++.+|+....
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~---------------~~--~~G~~~~~~~g~l~v~~~~-------- 60 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDL---------------PG--PNGMAFDRPDGRLYVADSG-------- 60 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEES---------------SS--EEEEEEECTTSEEEEEETT--------
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEec---------------CC--CceEEEEccCCEEEEEEcC--------
Confidence 577887742 22479999999987766442 11 223333 36888888653
Q ss_pred eEEEEECCCCceEEeccC--CCCCCCCcceEEEEECCEEEEEecCCCCCCCC--CceEEEECCCCcEEEeeCCCCCCCcc
Q 008260 273 QVKVFDLQTCSWSTLKTY--GKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLL--NDLHILDLETMTWDEIDAVGVPPSPR 348 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~--g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~--~~v~~yd~~t~~W~~v~~~g~~p~~R 348 (572)
.+.++|+.+.+++.+... +..+..+..-.++--++.||+---........ ..++++++. .+.+.+... -.
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-----~~ 134 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-----LG 134 (246)
T ss_dssp CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-----ES
T ss_pred ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-----cc
Confidence 346679999999988643 11133344434444477888754322221112 569999998 666555422 12
Q ss_pred cceEEEEEcCC-EEEEEeCCCCCcCcCcEEEEECCC--CcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCC
Q 008260 349 SDHAAAVHAER-YLLIFGGGSHAACFNDLHVLDLQT--MEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGE 425 (572)
Q Consensus 349 ~~~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~t--~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~ 425 (572)
.-.+.++..++ .||+.--. .+.|++||+.. .++........++......-...++. +
T Consensus 135 ~pNGi~~s~dg~~lyv~ds~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~---------------~ 194 (246)
T PF08450_consen 135 FPNGIAFSPDGKTLYVADSF-----NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS---------------D 194 (246)
T ss_dssp SEEEEEEETTSSEEEEEETT-----TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT---------------T
T ss_pred cccceEECCcchheeecccc-----cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC---------------C
Confidence 22345555444 67774322 25699999853 33433211111222221233344433 4
Q ss_pred CEEEEEcCCCCCccCcEEEEeCCCC
Q 008260 426 DVIVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 426 ~~l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
+.||+..- ....|++||+.-.
T Consensus 195 G~l~va~~----~~~~I~~~~p~G~ 215 (246)
T PF08450_consen 195 GNLWVADW----GGGRIVVFDPDGK 215 (246)
T ss_dssp S-EEEEEE----TTTEEEEEETTSC
T ss_pred CCEEEEEc----CCCEEEEECCCcc
Confidence 47888621 1156999998854
No 63
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.52 E-value=4 Score=43.13 Aligned_cols=189 Identities=17% Similarity=0.183 Sum_probs=101.9
Q ss_pred ceeEEEECCEEEEEccCCCCcccCcEEEEEcCCC--cEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccC
Q 008260 188 EHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHT 265 (572)
Q Consensus 188 ~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~ 265 (572)
..+.++.+++||+.+. ...++.+|..+. .|+.-... + ...+-+..++.+|+..+
T Consensus 113 ~~~~~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~---------------~-~~ssP~v~~~~v~v~~~-- 168 (394)
T PRK11138 113 SGGVTVAGGKVYIGSE------KGQVYALNAEDGEVAWQTKVAG---------------E-ALSRPVVSDGLVLVHTS-- 168 (394)
T ss_pred ccccEEECCEEEEEcC------CCEEEEEECCCCCCcccccCCC---------------c-eecCCEEECCEEEEECC--
Confidence 3445667889987543 136999998775 58753211 0 11222445788887533
Q ss_pred CCCCcceeEEEEECCCCc--eEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCC--cEEEeeCC
Q 008260 266 KDPSEIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM--TWDEIDAV 341 (572)
Q Consensus 266 ~~~~~~~~v~~yd~~~~~--W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~v~~~ 341 (572)
...++.||+.+.+ |+.-... +....+...+-++.++.+|+..+ ...++.+|+++. .|+.-...
T Consensus 169 -----~g~l~ald~~tG~~~W~~~~~~-~~~~~~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~~ 235 (394)
T PRK11138 169 -----NGMLQALNESDGAVKWTVNLDV-PSLTLRGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIWQQRISQ 235 (394)
T ss_pred -----CCEEEEEEccCCCEeeeecCCC-CcccccCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhheecccc
Confidence 1368999998765 8765321 11111222233445677666432 235788888765 48643211
Q ss_pred --CCCCCcc---cceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc--EEeeccCCCCCCCccccEEEEECCccccc
Q 008260 342 --GVPPSPR---SDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME--WSRPTQQGEIPTPRAGHAGVTIGENWFLG 414 (572)
Q Consensus 342 --g~~p~~R---~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~v~~~g~~p~~R~~~~~~~~~~~~~iG 414 (572)
+.....| ...+-++. ++.+|+.+.. ..++++|+.+.+ |+.-. ... ...++.++
T Consensus 236 ~~~~~~~~~~~~~~~sP~v~-~~~vy~~~~~------g~l~ald~~tG~~~W~~~~-----~~~---~~~~~~~~----- 295 (394)
T PRK11138 236 PTGATEIDRLVDVDTTPVVV-GGVVYALAYN------GNLVALDLRSGQIVWKREY-----GSV---NDFAVDGG----- 295 (394)
T ss_pred CCCccchhcccccCCCcEEE-CCEEEEEEcC------CeEEEEECCCCCEEEeecC-----CCc---cCcEEECC-----
Confidence 0000001 11222333 5668876532 468999998764 87531 111 12334444
Q ss_pred eeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCC
Q 008260 415 LSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 415 ~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
+||+... + ..++++|+++.
T Consensus 296 ------------~vy~~~~-~----g~l~ald~~tG 314 (394)
T PRK11138 296 ------------RIYLVDQ-N----DRVYALDTRGG 314 (394)
T ss_pred ------------EEEEEcC-C----CeEEEEECCCC
Confidence 6777542 2 35899998775
No 64
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=95.45 E-value=0.024 Score=54.10 Aligned_cols=80 Identities=20% Similarity=0.168 Sum_probs=59.1
Q ss_pred HHHHHhHhcccCCCCCccccccCCCChhhHHHHhhheeeeeeCCCCCCC-------------C-CCCC-------hhhhH
Q 008260 16 FYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPK-------------P-SSWS-------PVEQS 74 (572)
Q Consensus 16 F~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~lY~l~kQat~G~~~~~~-------------p-~~~~-------~~~~~ 74 (572)
|.++...+. .+.-..+.|+.++|-||.-|+..|+++.+. | .+.+ .....
T Consensus 103 y~Q~~~di~----------~g~~~~~~~~~~~Laal~~q~~~gd~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~ 172 (207)
T smart00295 103 YLQVRNDIL----------EGRLPCPEEEALLLAALALQAEFGDYDEELHVLLKELSLKRFLPKQLLDSEKRTLKEWRER 172 (207)
T ss_pred HHHHHHHHH----------cCccCCCHHHHHHHHHHHHHHHhcCCChHhcCCccccccceeCChhhhhhccccHHHHHHH
Confidence 556666663 234467899999999999999999997532 1 1111 11233
Q ss_pred hHHHhhcCCCCCHHHHHHHHHHHHHHhCCCcc
Q 008260 75 KWKSWQGLGNMATTEAMRLFVKILEEEDPGWY 106 (572)
Q Consensus 75 k~~aW~~~~~~~~~~a~~~yi~~~~~~~p~~~ 106 (572)
--++|+++.|||+.+||.+||+++.++ |.|.
T Consensus 173 i~~~~~~~~~~s~~~a~~~yl~~~~~l-p~fG 203 (207)
T smart00295 173 IVSLHKELIGLSPEEAKLKYLELAEKL-PTYG 203 (207)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHhccc-cccC
Confidence 457899999999999999999999987 7664
No 65
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.32 E-value=0.68 Score=46.44 Aligned_cols=122 Identities=18% Similarity=0.138 Sum_probs=70.6
Q ss_pred EEec-CCCCCC-CCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCc-CcCcEEEEECCCCcEE
Q 008260 311 IFGG-EDAKRS-LLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAA-CFNDLHVLDLQTMEWS 387 (572)
Q Consensus 311 v~GG-~~~~~~-~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~t~~W~ 387 (572)
++|| ++..+. .+..+..||+.+.+|..+... -. -.-.+....+++.|||.|-...+. ....+-.||..+.+|+
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~---i~-G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~ 77 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNG---IS-GTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS 77 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCC---ce-EEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee
Confidence 3455 443332 367899999999999998643 11 222334444567788777544333 3456899999999999
Q ss_pred eeccC--CCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCCccccc
Q 008260 388 RPTQQ--GEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKSTLSS 455 (572)
Q Consensus 388 ~v~~~--g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~~~~~~ 455 (572)
.+... ..+|.+- .+.....+ ....+++.|.. ..-..-+..|| ...|...
T Consensus 78 ~~~~~~s~~ipgpv--~a~~~~~~--------------d~~~~~~aG~~-~~g~~~l~~~d--Gs~W~~i 128 (281)
T PF12768_consen 78 SLGGGSSNSIPGPV--TALTFISN--------------DGSNFWVAGRS-ANGSTFLMKYD--GSSWSSI 128 (281)
T ss_pred ecCCcccccCCCcE--EEEEeecc--------------CCceEEEecee-cCCCceEEEEc--CCceEec
Confidence 88652 2344442 22222221 13367777765 22233455664 4456543
No 66
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.21 E-value=3.1 Score=40.69 Aligned_cols=181 Identities=12% Similarity=0.105 Sum_probs=98.5
Q ss_pred eeEEEE--CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCC
Q 008260 189 HGAAVV--QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK 266 (572)
Q Consensus 189 ~s~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~ 266 (572)
.+++.. ++++|+... ..+.++|+.+.+++.+..... ...+..+..-.++.-++.||+---...
T Consensus 43 ~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~--------~~~~~~~~ND~~vd~~G~ly~t~~~~~ 107 (246)
T PF08450_consen 43 NGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTVLADLPD--------GGVPFNRPNDVAVDPDGNLYVTDSGGG 107 (246)
T ss_dssp EEEEEECTTSEEEEEET-------TCEEEEETTTTEEEEEEEEET--------TCSCTEEEEEEEE-TTS-EEEEEECCB
T ss_pred ceEEEEccCCEEEEEEc-------CceEEEecCCCcEEEEeeccC--------CCcccCCCceEEEcCCCCEEEEecCCC
Confidence 444444 688888765 245777999999998876520 000233334344444788887643322
Q ss_pred CCCcc--eeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCc--EEEeeC
Q 008260 267 DPSEI--IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMT--WDEIDA 340 (572)
Q Consensus 267 ~~~~~--~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~v~~ 340 (572)
..... ..++++++. .+.+.+... + ..-.+.++. ++.||+.-- ..+.++.|+++... +.....
T Consensus 108 ~~~~~~~g~v~~~~~~-~~~~~~~~~--~---~~pNGi~~s~dg~~lyv~ds------~~~~i~~~~~~~~~~~~~~~~~ 175 (246)
T PF08450_consen 108 GASGIDPGSVYRIDPD-GKVTVVADG--L---GFPNGIAFSPDGKTLYVADS------FNGRIWRFDLDADGGELSNRRV 175 (246)
T ss_dssp CTTCGGSEEEEEEETT-SEEEEEEEE--E---SSEEEEEEETTSSEEEEEET------TTTEEEEEEEETTTCCEEEEEE
T ss_pred ccccccccceEEECCC-CeEEEEecC--c---ccccceEECCcchheeeccc------ccceeEEEeccccccceeeeee
Confidence 21222 679999999 666655421 1 112344444 446777432 24569999986433 433221
Q ss_pred CCCCCCc-ccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEE
Q 008260 341 VGVPPSP-RSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTI 407 (572)
Q Consensus 341 ~g~~p~~-R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~ 407 (572)
....+.. ..--++++-.++.|||..-.. ..|++||++...-..+. +|.+ ..+.+++
T Consensus 176 ~~~~~~~~g~pDG~~vD~~G~l~va~~~~-----~~I~~~~p~G~~~~~i~----~p~~--~~t~~~f 232 (246)
T PF08450_consen 176 FIDFPGGPGYPDGLAVDSDGNLWVADWGG-----GRIVVFDPDGKLLREIE----LPVP--RPTNCAF 232 (246)
T ss_dssp EEE-SSSSCEEEEEEEBTTS-EEEEEETT-----TEEEEEETTSCEEEEEE-----SSS--SEEEEEE
T ss_pred EEEcCCCCcCCCcceEcCCCCEEEEEcCC-----CEEEEECCCccEEEEEc----CCCC--CEEEEEE
Confidence 1011121 223456666667799873211 57999999977677775 4534 3345554
No 67
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.18 E-value=0.27 Score=49.34 Aligned_cols=124 Identities=13% Similarity=0.197 Sum_probs=74.5
Q ss_pred EEeccCCCCC--cceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEE
Q 008260 260 SIAGHTKDPS--EIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWD 336 (572)
Q Consensus 260 v~GG~~~~~~--~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~ 336 (572)
++||...... ....+-.||+.+.+|..+... -.+ .-..+... +++||+.|-+.-...-...+..||.++.+|+
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~---i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~ 77 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNG---ISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS 77 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCC---ceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee
Confidence 4555544322 477899999999999998631 111 12233333 6788888766444423556999999999999
Q ss_pred EeeCC--CCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeecc
Q 008260 337 EIDAV--GVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQ 391 (572)
Q Consensus 337 ~v~~~--g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~ 391 (572)
.+... ...|.+-........+...+++.|....+ ..-+..| ...+|+.+..
T Consensus 78 ~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g--~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 78 SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG--STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred ecCCcccccCCCcEEEEEeeccCCceEEEeceecCC--CceEEEE--cCCceEeccc
Confidence 98762 12344432222222234457777765221 2346666 4667998864
No 68
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.18 E-value=5.1 Score=42.31 Aligned_cols=177 Identities=14% Similarity=0.089 Sum_probs=93.3
Q ss_pred eEEecccCCCCCCCCcceeEEEECCEEEEEccCCCCcccCcEEEEEcCCC--cEEEeeecccccCCCCCCCCCCCCCcce
Q 008260 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGH 249 (572)
Q Consensus 172 ~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~R~~h 249 (572)
.|+.....| .+......+.++.+++||+.+.. ..+++||..+. .|+.-..... ...+....++...
T Consensus 47 ~W~~~~g~g-~~~~~~~~sPvv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~-----~~~~~~~~~~~~~ 114 (394)
T PRK11138 47 VWSTSVGDG-VGDYYSRLHPAVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKD-----GWFSKNKSALLSG 114 (394)
T ss_pred eeEEEcCCC-CccceeeeccEEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCcc-----ccccccccccccc
Confidence 787543222 11111223456779999998652 36899998865 4875322100 0000000122333
Q ss_pred eEEEeCCEEEEEeccCCCCCcceeEEEEECCCC--ceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEE
Q 008260 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTC--SWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHI 327 (572)
Q Consensus 250 s~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 327 (572)
+.+..+++||+.+. + ..++.+|..+. .|+.-.. .. ...+-++.++.+|+..+ .+.++.
T Consensus 115 ~~~v~~~~v~v~~~-~------g~l~ald~~tG~~~W~~~~~-----~~-~~ssP~v~~~~v~v~~~-------~g~l~a 174 (394)
T PRK11138 115 GVTVAGGKVYIGSE-K------GQVYALNAEDGEVAWQTKVA-----GE-ALSRPVVSDGLVLVHTS-------NGMLQA 174 (394)
T ss_pred ccEEECCEEEEEcC-C------CEEEEEECCCCCCcccccCC-----Cc-eecCCEEECCEEEEECC-------CCEEEE
Confidence 45566888887432 1 36899998765 5876531 11 11223445788887432 245999
Q ss_pred EECCCCc--EEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCC--cEEe
Q 008260 328 LDLETMT--WDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM--EWSR 388 (572)
Q Consensus 328 yd~~t~~--W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~ 388 (572)
||+++.+ |+.-... +....+...+-++. ++.+|+..+ + ..++.+|+++. .|+.
T Consensus 175 ld~~tG~~~W~~~~~~-~~~~~~~~~sP~v~-~~~v~~~~~-~-----g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 175 LNESDGAVKWTVNLDV-PSLTLRGESAPATA-FGGAIVGGD-N-----GRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred EEccCCCEeeeecCCC-CcccccCCCCCEEE-CCEEEEEcC-C-----CEEEEEEccCChhhhee
Confidence 9998764 8765322 00111222233333 454655433 2 45888898765 4764
No 69
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.97 E-value=5.1 Score=42.47 Aligned_cols=149 Identities=14% Similarity=0.076 Sum_probs=80.2
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccC
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTY 290 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~ 290 (572)
..++++|+.+.+-..+.... ......+...-+..|++..... ...+++.+|+.+...+.+...
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~-------------~~~~~~~~spDg~~l~~~~~~~----~~~~i~~~d~~~~~~~~l~~~ 276 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFP-------------GMNGAPAFSPDGSKLAVSLSKD----GNPDIYVMDLDGKQLTRLTNG 276 (417)
T ss_pred cEEEEEECCCCCEEEeecCC-------------CCccceEECCCCCEEEEEECCC----CCccEEEEECCCCCEEECCCC
Confidence 57999999888766554321 1111111111234565554322 224799999998887777532
Q ss_pred CCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCC
Q 008260 291 GKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHA 370 (572)
Q Consensus 291 g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~ 370 (572)
. ...........+.+|++.....+ ...++++|+.+..++.+...+ ..........++..+++......
T Consensus 277 ~---~~~~~~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~~ 344 (417)
T TIGR02800 277 P---GIDTEPSWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREGG 344 (417)
T ss_pred C---CCCCCEEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccCC
Confidence 1 11111111112345555433222 246999999998888775331 22223333434445555543321
Q ss_pred cCcCcEEEEECCCCcEEeec
Q 008260 371 ACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 371 ~~~~~v~~yd~~t~~W~~v~ 390 (572)
...++.+|+.+..++.+.
T Consensus 345 --~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 345 --GFNIAVMDLDGGGERVLT 362 (417)
T ss_pred --ceEEEEEeCCCCCeEEcc
Confidence 247999999987776664
No 70
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.70 E-value=4.9 Score=39.68 Aligned_cols=185 Identities=16% Similarity=0.100 Sum_probs=99.0
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcC-----CCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCC
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLR-----SWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPS 269 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~-----t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~ 269 (572)
.+++|++.|..+. .++.|.-. .++....-. +|.+-.|-..+++++.+|..-.
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~-------------Lp~~~~GtG~vVYngslYY~~~------ 86 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYK-------------LPYPWQGTGHVVYNGSLYYNKY------ 86 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEE-------------EeceeccCCeEEECCcEEEEec------
Confidence 5789999885544 45555322 222222222 2456667777889999888755
Q ss_pred cceeEEEEECCCCceE-E--eccCCC---CCCCCcc---eEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeC
Q 008260 270 EIIQVKVFDLQTCSWS-T--LKTYGK---PPVSRGG---QSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDA 340 (572)
Q Consensus 270 ~~~~v~~yd~~~~~W~-~--~~~~g~---~p~~R~~---~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~ 340 (572)
..+.|-.||+.+..-. + ++..+. .|....+ .-.++.++-|+|+-....... .-.|-.+|+.+..-.+.=.
T Consensus 87 ~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g-~ivvskld~~tL~v~~tw~ 165 (250)
T PF02191_consen 87 NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG-NIVVSKLDPETLSVEQTWN 165 (250)
T ss_pred CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC-cEEEEeeCcccCceEEEEE
Confidence 3457999999998755 3 321110 1111111 223444566777765543321 1235556766543222211
Q ss_pred CCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECC
Q 008260 341 VGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGE 409 (572)
Q Consensus 341 ~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~ 409 (572)
. ..+.+..+.+-.+ .+.||++-..+... ..-.+.||+.+++=..+.. .++.+-..++++-.+-
T Consensus 166 T-~~~k~~~~naFmv--CGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i--~f~~~~~~~~~l~YNP 228 (250)
T PF02191_consen 166 T-SYPKRSAGNAFMV--CGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSI--PFPNPYGNISMLSYNP 228 (250)
T ss_pred e-ccCchhhcceeeE--eeEEEEEEECCCCC-cEEEEEEECCCCceeceee--eeccccCceEeeeECC
Confidence 1 1133333333333 34799987755433 3446899999887665542 2444444555555554
No 71
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=94.70 E-value=4.9 Score=39.72 Aligned_cols=144 Identities=19% Similarity=0.232 Sum_probs=73.4
Q ss_pred EEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE-eC-CEEEEEeccCCCCCcceeE
Q 008260 197 KMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WE-NKLLSIAGHTKDPSEIIQV 274 (572)
Q Consensus 197 ~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~-~~iyv~GG~~~~~~~~~~v 274 (572)
++|+.++.+ +.+.++|+.+++-...-... ..++ +++. -+ ..+|+.++.+ +.+
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~------------~~~~---~l~~~~dg~~l~~~~~~~------~~v 55 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVG------------QRPR---GITLSKDGKLLYVCASDS------DTI 55 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEECC------------CCCC---ceEECCCCCEEEEEECCC------CeE
Confidence 567776632 37889998877643322211 1122 2222 23 4567776542 358
Q ss_pred EEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceE
Q 008260 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (572)
Q Consensus 275 ~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~ 352 (572)
.+||+.+.+....-..+ ..+ ..++.. ++.+|+.++. .+.+.+||+.+.+-... . +.....++
T Consensus 56 ~~~d~~~~~~~~~~~~~--~~~---~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~~~~--~---~~~~~~~~ 119 (300)
T TIGR03866 56 QVIDLATGEVIGTLPSG--PDP---ELFALHPNGKILYIANED------DNLVTVIDIETRKVLAE--I---PVGVEPEG 119 (300)
T ss_pred EEEECCCCcEEEeccCC--CCc---cEEEECCCCCEEEEEcCC------CCeEEEEECCCCeEEeE--e---eCCCCcce
Confidence 89999887764422111 111 223332 3456666542 23589999887542211 1 11111234
Q ss_pred EEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcE
Q 008260 353 AAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (572)
Q Consensus 353 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W 386 (572)
++...++.+++++..+. +.+..||..+.+-
T Consensus 120 ~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~~ 149 (300)
T TIGR03866 120 MAVSPDGKIVVNTSETT----NMAHFIDTKTYEI 149 (300)
T ss_pred EEECCCCCEEEEEecCC----CeEEEEeCCCCeE
Confidence 44555555777665332 2456678776543
No 72
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.68 E-value=1.8 Score=45.27 Aligned_cols=153 Identities=15% Similarity=0.192 Sum_probs=85.3
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEE
Q 008260 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVK 275 (572)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~ 275 (572)
..|.+++|.++.- .+|..|=+++. .+..+... -.|.........+....+++|... -++
T Consensus 225 ~plllvaG~d~~l---rifqvDGk~N~--~lqS~~l~----------~fPi~~a~f~p~G~~~i~~s~rrk------y~y 283 (514)
T KOG2055|consen 225 APLLLVAGLDGTL---RIFQVDGKVNP--KLQSIHLE----------KFPIQKAEFAPNGHSVIFTSGRRK------YLY 283 (514)
T ss_pred CceEEEecCCCcE---EEEEecCccCh--hheeeeec----------cCccceeeecCCCceEEEecccce------EEE
Confidence 5688888854432 46666666655 33333200 112222222222333777777643 489
Q ss_pred EEECCCCceEEeccCCCCCCCCcceEE-EEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEE
Q 008260 276 VFDLQTCSWSTLKTYGKPPVSRGGQSV-TLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAA 354 (572)
Q Consensus 276 ~yd~~~~~W~~~~~~g~~p~~R~~~~~-~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~ 354 (572)
.||..+.+-+++.....++ .++-+.. +...+.++++-|..+ -|+.+...|+.|-.--.. .++....+.
T Consensus 284 syDle~ak~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~eli~s~Ki----eG~v~~~~f 352 (514)
T KOG2055|consen 284 SYDLETAKVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKELITSFKI----EGVVSDFTF 352 (514)
T ss_pred EeeccccccccccCCCCcc-cchhheeEecCCCCeEEEcccCc------eEEeehhhhhhhhheeee----ccEEeeEEE
Confidence 9999999999997554444 2233333 334555666766533 367777777777322111 122211122
Q ss_pred EEcCCEEEEEeCCCCCcCcCcEEEEECCCCcE
Q 008260 355 VHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (572)
Q Consensus 355 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W 386 (572)
...+..|++.||. ..||++|+.++..
T Consensus 353 sSdsk~l~~~~~~------GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 353 SSDSKELLASGGT------GEVYVWNLRQNSC 378 (514)
T ss_pred ecCCcEEEEEcCC------ceEEEEecCCcce
Confidence 2234578888886 4799999998753
No 73
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=94.43 E-value=0.055 Score=47.09 Aligned_cols=82 Identities=23% Similarity=0.255 Sum_probs=56.0
Q ss_pred HHHHHHHhHhcccCCCCCccccccCCCChhhHHHHhhheeeeeeCCCCCCC---CCC-------------CC-------h
Q 008260 14 ERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPK---PSS-------------WS-------P 70 (572)
Q Consensus 14 ~~F~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~lY~l~kQat~G~~~~~~---p~~-------------~~-------~ 70 (572)
--|.++...|- .+.-..+.++.++|-||.-|+..|+++... .+. +- .
T Consensus 13 lly~Q~~~~vl----------~g~~~~~~e~a~~LAAl~~q~~~gd~~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~ 82 (126)
T PF00373_consen 13 LLYLQARRDVL----------QGRLPCSEEDAIKLAALQLQAEYGDYNSEQEHSSGYIDPEIKEFQLENFIPKAPKLIKK 82 (126)
T ss_dssp HHHHHHHHHHH----------TTSSTS-HHHHHHHHHHHHHHHHTSSTTTTTSSTTTTTGSHHCTCGHGTSSHHHHHHCC
T ss_pred HHHHHHHHHHH----------cCcCCCCHHHHHHHHHHHHHHHhcCCCcccccCcccccccccchhhhhhhhhhHHHHhh
Confidence 34666777763 334578999999999999999999998221 111 11 0
Q ss_pred hhhHhH-----HHhhcCCCCCHHHHHHHHHHHHHHhCCCcc
Q 008260 71 VEQSKW-----KSWQGLGNMATTEAMRLFVKILEEEDPGWY 106 (572)
Q Consensus 71 ~~~~k~-----~aW~~~~~~~~~~a~~~yi~~~~~~~p~~~ 106 (572)
.....| ..|+++.|||..+||..|++++.++ |.|.
T Consensus 83 ~~~~~~~~~I~~~~~~l~~~s~~~a~~~fl~~~~~~-p~yG 122 (126)
T PF00373_consen 83 MKQKEWEKRILEQHKKLRGMSPEEAKLQFLQICQSL-PTYG 122 (126)
T ss_dssp STHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHCTS-TTTT
T ss_pred hhHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC-CCCC
Confidence 122222 7789999999999999999999874 6553
No 74
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.02 E-value=6.1 Score=38.99 Aligned_cols=166 Identities=19% Similarity=0.169 Sum_probs=96.1
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECC-----CCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEE
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQ-----TCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILD 329 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~-----~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd 329 (572)
.+++|++.|.... .++.|... .+...+.- .+|.+-.+.+.++.++.+|..=. -.+.|.+||
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYngslYY~~~------~s~~Ivkyd 95 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYD 95 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECCcEEEEec------CCceEEEEE
Confidence 4789999887654 56666322 22222222 45666677788888998887643 267899999
Q ss_pred CCCCcEE---EeeCCCC---CCCcc---cceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCC----cEEeeccCCCCC
Q 008260 330 LETMTWD---EIDAVGV---PPSPR---SDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM----EWSRPTQQGEIP 396 (572)
Q Consensus 330 ~~t~~W~---~v~~~g~---~p~~R---~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~----~W~~v~~~g~~p 396 (572)
+.+..-. .++..+. .|... ...-.++-.++ |+|+-....+.-.--|-++|+.+. +|.. ..+
T Consensus 96 L~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G-LWvIYat~~~~g~ivvskld~~tL~v~~tw~T-----~~~ 169 (250)
T PF02191_consen 96 LTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG-LWVIYATEDNNGNIVVSKLDPETLSVEQTWNT-----SYP 169 (250)
T ss_pred CcCCcEEEEEECCccccccccceecCCCceEEEEEcCCC-EEEEEecCCCCCcEEEEeeCcccCceEEEEEe-----ccC
Confidence 9988755 3332211 11111 11223443445 777755333221123556677654 4543 256
Q ss_pred CCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCCcccccccC
Q 008260 397 TPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKSTLSSKMI 458 (572)
Q Consensus 397 ~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~~~~~~~~~ 458 (572)
.+..+.+-+++| .||++-..+.....=.+.||..++.-....++
T Consensus 170 k~~~~naFmvCG------------------vLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 170 KRSAGNAFMVCG------------------VLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred chhhcceeeEee------------------EEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence 666666655554 69998877654444458899887755544433
No 75
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=93.80 E-value=6.1 Score=37.30 Aligned_cols=155 Identities=17% Similarity=0.216 Sum_probs=79.8
Q ss_pred eEEEECCEEEEEccCCCCcccCcEEEEEcCCCcE--EEeeecccccCCCCCCCCCCCCCcceeEEEeC-CEEEEEeccCC
Q 008260 190 GAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAW--SKIQAKAVAESTESPSPALLTPCAGHSLIPWE-NKLLSIAGHTK 266 (572)
Q Consensus 190 s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W--~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~-~~iyv~GG~~~ 266 (572)
+++...+++|+|-| +.+|+++...... ..+... -+..| .....+....+ +++|+|-|.
T Consensus 11 A~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~---------w~~~p-~~IDAa~~~~~~~~~yfFkg~-- 71 (194)
T cd00094 11 AVTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSF---------WPSLP-SPVDAAFERPDTGKIYFFKGD-- 71 (194)
T ss_pred eEEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhh---------CCCCC-CCccEEEEECCCCEEEEECCC--
Confidence 34455699999977 3678887652111 111111 11112 12222333223 899999764
Q ss_pred CCCcceeEEEEECCCCceE---EeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEE----
Q 008260 267 DPSEIIQVKVFDLQTCSWS---TLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDE---- 337 (572)
Q Consensus 267 ~~~~~~~v~~yd~~~~~W~---~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~---- 337 (572)
.+|+|+..+..+. .+...+-++.+..--++... ++++|+|-| +..|+||..+++...
T Consensus 72 ------~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y~ry~~~~~~v~~~yP~ 137 (194)
T cd00094 72 ------KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG--------DKYWRYDEKTQKMDPGYPK 137 (194)
T ss_pred ------EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC--------CEEEEEeCCCccccCCCCc
Confidence 5788876642221 11111111111111233333 579999977 347788765554321
Q ss_pred -eeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 338 -IDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 338 -v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
+... -+-.+..-.++....++.+|+|-| +..|+||..+.+
T Consensus 138 ~i~~~-w~g~p~~idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 138 LIETD-FPGVPDKVDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred chhhc-CCCcCCCcceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 1100 011222233444455467999988 679999998776
No 76
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.51 E-value=7.4 Score=37.37 Aligned_cols=149 Identities=16% Similarity=0.153 Sum_probs=84.0
Q ss_pred EEEECCEEEEEccCCCCcccCcEEEEEcCCC--cEEE-eeecccccCCCCCCCCCCCC-CcceeEEEeCCEEEEEeccCC
Q 008260 191 AAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSK-IQAKAVAESTESPSPALLTP-CAGHSLIPWENKLLSIAGHTK 266 (572)
Q Consensus 191 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~-~~~~~~~~~~~~~~~~~p~~-R~~hs~~~~~~~iyv~GG~~~ 266 (572)
.+..++.||+..+ -+.++.+|..+. .|+. ..... +.+ +........++.+|+...
T Consensus 72 ~~~~~~~v~v~~~------~~~l~~~d~~tG~~~W~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~--- 130 (238)
T PF13360_consen 72 PVVDGGRVYVGTS------DGSLYALDAKTGKVLWSIYLTSSP------------PAGVRSSSSPAVDGDRLYVGTS--- 130 (238)
T ss_dssp EEEETTEEEEEET------TSEEEEEETTTSCEEEEEEE-SSC------------TCSTB--SEEEEETTEEEEEET---
T ss_pred eeecccccccccc------eeeeEecccCCcceeeeecccccc------------ccccccccCceEecCEEEEEec---
Confidence 4677899988863 127999998775 4873 33211 112 233334444677776654
Q ss_pred CCCcceeEEEEECCCCc--eEEeccCCCCCC-----CCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCc--EEE
Q 008260 267 DPSEIIQVKVFDLQTCS--WSTLKTYGKPPV-----SRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT--WDE 337 (572)
Q Consensus 267 ~~~~~~~v~~yd~~~~~--W~~~~~~g~~p~-----~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~ 337 (572)
...+..+|+.+.+ |+.....+.... .......+..++.+|+..+.. .+..+|..+.+ |+.
T Consensus 131 ----~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-------~~~~~d~~tg~~~w~~ 199 (238)
T PF13360_consen 131 ----SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG-------RVVAVDLATGEKLWSK 199 (238)
T ss_dssp ----CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS-------SEEEEETTTTEEEEEE
T ss_pred ----cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC-------eEEEEECCCCCEEEEe
Confidence 2368999988765 666532111000 011123333467888876542 25666999887 843
Q ss_pred eeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 338 IDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 338 v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
. .. .........++.||+.. .+ ..++++|+++.+
T Consensus 200 ~-~~-------~~~~~~~~~~~~l~~~~-~~-----~~l~~~d~~tG~ 233 (238)
T PF13360_consen 200 P-IS-------GIYSLPSVDGGTLYVTS-SD-----GRLYALDLKTGK 233 (238)
T ss_dssp C-SS--------ECECEECCCTEEEEEE-TT-----TEEEEEETTTTE
T ss_pred c-CC-------CccCCceeeCCEEEEEe-CC-----CEEEEEECCCCC
Confidence 3 22 12222344566677766 22 679999999875
No 77
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.39 E-value=14 Score=40.29 Aligned_cols=130 Identities=19% Similarity=0.222 Sum_probs=67.2
Q ss_pred cceeEEEECCEEEEEccCCCCcccCcEEEEEcCCC--cEEEeeecccccCCCCCCCCCCCCCcceeEEEeC-CEEEEEec
Q 008260 187 YEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWE-NKLLSIAG 263 (572)
Q Consensus 187 ~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~-~~iyv~GG 263 (572)
...+-++.+++||+.... ..++.+|..+. .|+.-..... . .. . .+-.....+..+ ++||+...
T Consensus 53 ~~~sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~---~---~~-~-~~~~~~g~~~~~~~~V~v~~~ 118 (488)
T cd00216 53 QEGTPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPA---D---RG-C-CDVVNRGVAYWDPRKVFFGTF 118 (488)
T ss_pred cccCCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCc---c---cc-c-cccccCCcEEccCCeEEEecC
Confidence 334556779999987541 46899998875 4876332110 0 00 0 001111234445 78886432
Q ss_pred cCCCCCcceeEEEEECCCC--ceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCC---CCCCceEEEECCCC--cEE
Q 008260 264 HTKDPSEIIQVKVFDLQTC--SWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKR---SLLNDLHILDLETM--TWD 336 (572)
Q Consensus 264 ~~~~~~~~~~v~~yd~~~~--~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~---~~~~~v~~yd~~t~--~W~ 336 (572)
...+..+|..+. .|+.-......+......+.++.++.+| +|..+... .....++.||.+|. .|+
T Consensus 119 -------~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 119 -------DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVI-IGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred -------CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEE-EeccccccccCCCCcEEEEEECCCCceeeE
Confidence 236889998765 4876532100000011223344566655 44332221 12457899999765 586
Q ss_pred Ee
Q 008260 337 EI 338 (572)
Q Consensus 337 ~v 338 (572)
.-
T Consensus 191 ~~ 192 (488)
T cd00216 191 FY 192 (488)
T ss_pred ee
Confidence 54
No 78
>PRK13684 Ycf48-like protein; Provisional
Probab=93.27 E-value=11 Score=38.82 Aligned_cols=190 Identities=12% Similarity=0.092 Sum_probs=93.8
Q ss_pred ceEEecccCCCCCCCCcceeEEEE-CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcce
Q 008260 171 DQWIAPPISGQRPKARYEHGAAVV-QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGH 249 (572)
Q Consensus 171 ~~W~~~~~~g~~p~~R~~~s~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~h 249 (572)
.+|+.+...-..|. .......+ ++.+|+.|. ...+++=+-.-.+|+.+... ..-.-+
T Consensus 119 ~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~g~------~G~i~~S~DgG~tW~~~~~~--------------~~g~~~ 176 (334)
T PRK13684 119 KNWTRIPLSEKLPG--SPYLITALGPGTAEMATN------VGAIYRTTDGGKNWEALVED--------------AAGVVR 176 (334)
T ss_pred CCCeEccCCcCCCC--CceEEEEECCCcceeeec------cceEEEECCCCCCceeCcCC--------------CcceEE
Confidence 38998753111222 12223333 345666654 12456655567899987542 222334
Q ss_pred eEEEeCCEEEEEeccCCCCCcceeEEE-EECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEE
Q 008260 250 SLIPWENKLLSIAGHTKDPSEIIQVKV-FDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHI 327 (572)
Q Consensus 250 s~~~~~~~iyv~GG~~~~~~~~~~v~~-yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 327 (572)
.+....+..|++.|..+. ++. .|....+|+.+. .+..+.-++++.. ++.++++|... ...
T Consensus 177 ~i~~~~~g~~v~~g~~G~------i~~s~~~gg~tW~~~~----~~~~~~l~~i~~~~~g~~~~vg~~G--------~~~ 238 (334)
T PRK13684 177 NLRRSPDGKYVAVSSRGN------FYSTWEPGQTAWTPHQ----RNSSRRLQSMGFQPDGNLWMLARGG--------QIR 238 (334)
T ss_pred EEEECCCCeEEEEeCCce------EEEEcCCCCCeEEEee----CCCcccceeeeEcCCCCEEEEecCC--------EEE
Confidence 444444444454444322 222 244456799985 2344555555554 67888886431 122
Q ss_pred E--ECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEE
Q 008260 328 L--DLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGV 405 (572)
Q Consensus 328 y--d~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~ 405 (572)
+ +-.-.+|+.+... ........++++...++.++++|.. ..++.-.....+|+.+.....++ ...+..+
T Consensus 239 ~~s~d~G~sW~~~~~~-~~~~~~~l~~v~~~~~~~~~~~G~~------G~v~~S~d~G~tW~~~~~~~~~~--~~~~~~~ 309 (334)
T PRK13684 239 FNDPDDLESWSKPIIP-EITNGYGYLDLAYRTPGEIWAGGGN------GTLLVSKDGGKTWEKDPVGEEVP--SNFYKIV 309 (334)
T ss_pred EccCCCCCccccccCC-ccccccceeeEEEcCCCCEEEEcCC------CeEEEeCCCCCCCeECCcCCCCC--cceEEEE
Confidence 3 1233589876421 0001122344444545568888763 22444344567899875322222 2344455
Q ss_pred EECC
Q 008260 406 TIGE 409 (572)
Q Consensus 406 ~~~~ 409 (572)
.+++
T Consensus 310 ~~~~ 313 (334)
T PRK13684 310 FLDP 313 (334)
T ss_pred EeCC
Confidence 5543
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.85 E-value=4.9 Score=42.31 Aligned_cols=147 Identities=20% Similarity=0.282 Sum_probs=77.7
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeE
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v 274 (572)
+++|+..|+.. .-+-+||..+..- +..+. ....|.. .--.+..++.+++.|+-+. -+
T Consensus 79 DG~LlaaGD~s-----G~V~vfD~k~r~i--LR~~~--------ah~apv~--~~~f~~~d~t~l~s~sDd~------v~ 135 (487)
T KOG0310|consen 79 DGRLLAAGDES-----GHVKVFDMKSRVI--LRQLY--------AHQAPVH--VTKFSPQDNTMLVSGSDDK------VV 135 (487)
T ss_pred CCeEEEccCCc-----CcEEEeccccHHH--HHHHh--------hccCcee--EEEecccCCeEEEecCCCc------eE
Confidence 69999999843 3478888544111 11111 0001121 1223446889999987643 35
Q ss_pred EEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCC-cEEEeeCCCCCCCcccceEE
Q 008260 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM-TWDEIDAVGVPPSPRSDHAA 353 (572)
Q Consensus 275 ~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~v~~~g~~p~~R~~~~~ 353 (572)
..+|..+..- .....|.--.-|++ .+...+++|++.||+++. +-.||+.+. .|..--+.| .|. . ..
T Consensus 136 k~~d~s~a~v-~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg~------vrl~DtR~~~~~v~elnhg-~pV--e--~v 202 (487)
T KOG0310|consen 136 KYWDLSTAYV-QAELSGHTDYVRCG-DISPANDHIVVTGSYDGK------VRLWDTRSLTSRVVELNHG-CPV--E--SV 202 (487)
T ss_pred EEEEcCCcEE-EEEecCCcceeEee-ccccCCCeEEEecCCCce------EEEEEeccCCceeEEecCC-Cce--e--eE
Confidence 5566666553 33322222222222 333447899999998765 667787766 443322221 111 1 23
Q ss_pred EEEcC-CEEEEEeCCCCCcCcCcEEEEECCCC
Q 008260 354 AVHAE-RYLLIFGGGSHAACFNDLHVLDLQTM 384 (572)
Q Consensus 354 ~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~t~ 384 (572)
+.+.+ ..|...|| +.+-++|+.+.
T Consensus 203 l~lpsgs~iasAgG-------n~vkVWDl~~G 227 (487)
T KOG0310|consen 203 LALPSGSLIASAGG-------NSVKVWDLTTG 227 (487)
T ss_pred EEcCCCCEEEEcCC-------CeEEEEEecCC
Confidence 34444 55556666 56777776643
No 80
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=92.84 E-value=14 Score=38.63 Aligned_cols=152 Identities=17% Similarity=0.208 Sum_probs=79.2
Q ss_pred EEEECCEEEEEccCCCCcccCcEEEEEcCCC--cEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCC
Q 008260 191 AAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDP 268 (572)
Q Consensus 191 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~ 268 (572)
.++.++.+|+..+ ...++.+|+.+. .|+.-.... ....+...+.+..++.+| +|...
T Consensus 141 p~v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~-----------~~~~~~~~sp~~~~~~v~-~~~~~--- 199 (377)
T TIGR03300 141 PLVANGLVVVRTN------DGRLTALDAATGERLWTYSRVTP-----------ALTLRGSASPVIADGGVL-VGFAG--- 199 (377)
T ss_pred CEEECCEEEEECC------CCeEEEEEcCCCceeeEEccCCC-----------ceeecCCCCCEEECCEEE-EECCC---
Confidence 3445777777543 135899998875 476532211 001122223344566554 44322
Q ss_pred CcceeEEEEECCCC--ceEEeccC--CCCCCCC---cceEEEEECCEEEEEecCCCCCCCCCceEEEECCCC--cEEEee
Q 008260 269 SEIIQVKVFDLQTC--SWSTLKTY--GKPPVSR---GGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM--TWDEID 339 (572)
Q Consensus 269 ~~~~~v~~yd~~~~--~W~~~~~~--g~~p~~R---~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~v~ 339 (572)
..+..+|+.+. .|+.-... +.....| ...+.++.++.+|+... ...++.||+++. .|+.-.
T Consensus 200 ---g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-------~g~l~a~d~~tG~~~W~~~~ 269 (377)
T TIGR03300 200 ---GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY-------QGRVAALDLRSGRVLWKRDA 269 (377)
T ss_pred ---CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc-------CCEEEEEECCCCcEEEeecc
Confidence 25888998765 47643211 0000001 12233445778887542 235899998765 475531
Q ss_pred CCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCC--cEEe
Q 008260 340 AVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM--EWSR 388 (572)
Q Consensus 340 ~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~ 388 (572)
+. ..+.+ +.+++||+.... ..++++|..+. .|+.
T Consensus 270 -----~~---~~~p~-~~~~~vyv~~~~------G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 270 -----SS---YQGPA-VDDNRLYVTDAD------GVVVALDRRSGSELWKN 305 (377)
T ss_pred -----CC---ccCce-EeCCEEEEECCC------CeEEEEECCCCcEEEcc
Confidence 11 11222 345668876431 46999998765 4765
No 81
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=92.11 E-value=11 Score=35.61 Aligned_cols=152 Identities=14% Similarity=0.179 Sum_probs=77.3
Q ss_pred EEEeCCEEEEEeccCCCCCcceeEEEEECCCCc--eEEeccC-CCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCce
Q 008260 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCS--WSTLKTY-GKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDL 325 (572)
Q Consensus 251 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~-g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v 325 (572)
+...++++|+|-|. .+|+++..... -..+... +.+| ..--++... ++++|+|=|. ..
T Consensus 12 ~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p--~~IDAa~~~~~~~~~yfFkg~--------~y 73 (194)
T cd00094 12 VTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLP--SPVDAAFERPDTGKIYFFKGD--------KY 73 (194)
T ss_pred EEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCC--CCccEEEEECCCCEEEEECCC--------EE
Confidence 44456999999774 46777764211 1222211 0122 222233333 2789999553 47
Q ss_pred EEEECCCCcEE---EeeCCCCCCCcccceEEEEEc-CCEEEEEeCCCCCcCcCcEEEEECCCCcEEe-----eccC-CCC
Q 008260 326 HILDLETMTWD---EIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTMEWSR-----PTQQ-GEI 395 (572)
Q Consensus 326 ~~yd~~t~~W~---~v~~~g~~p~~R~~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~-----v~~~-g~~ 395 (572)
|+||..+..+. .+...+-++.+..-.++.... ++++|+|-| +..|+||..+++... +... ..+
T Consensus 74 w~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~ 146 (194)
T cd00094 74 WVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGV 146 (194)
T ss_pred EEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCc
Confidence 77775542221 111111112112223344443 568999998 678999976655421 1000 012
Q ss_pred CCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCCc
Q 008260 396 PTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKS 451 (572)
Q Consensus 396 p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~~ 451 (572)
|. .. .++.... .+++|+|-| +..|+||..+..
T Consensus 147 p~-~i-daa~~~~----------------~~~~yfF~g------~~y~~~d~~~~~ 178 (194)
T cd00094 147 PD-KV-DAAFRWL----------------DGYYYFFKG------DQYWRFDPRSKE 178 (194)
T ss_pred CC-Cc-ceeEEeC----------------CCcEEEEEC------CEEEEEeCccce
Confidence 21 11 2233332 137999988 679999987654
No 82
>PRK04792 tolB translocation protein TolB; Provisional
Probab=91.93 E-value=21 Score=38.55 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=59.3
Q ss_pred eeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccce
Q 008260 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (572)
Q Consensus 272 ~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~ 351 (572)
..++++|+.+.+-+.+.. .+.........-.+++|++....++ ..+++++|+++.+.+.+... .. ...
T Consensus 242 ~~L~~~dl~tg~~~~lt~---~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~---~~--~~~ 309 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTS---FPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRH---RA--IDT 309 (448)
T ss_pred cEEEEEECCCCCeEEecC---CCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccC---CC--Ccc
Confidence 579999998887766642 2211111111222456766543332 24799999999988877543 11 111
Q ss_pred EEEEE-cCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 352 AAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 352 ~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
..+.. +++.|++.....+ ...+|.+|+.+.+++.+.
T Consensus 310 ~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 310 EPSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLT 346 (448)
T ss_pred ceEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEe
Confidence 22223 3344554432221 157999999999998875
No 83
>PRK05137 tolB translocation protein TolB; Provisional
Probab=91.80 E-value=21 Score=38.29 Aligned_cols=147 Identities=11% Similarity=0.044 Sum_probs=75.7
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccC
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTY 290 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~ 290 (572)
..++++|+.+.+.+.+.... ..-...+....+.+|++....+. ..+++.+|+.+.....+...
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~-------------g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~ 288 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFP-------------GMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDS 288 (435)
T ss_pred CEEEEEECCCCcEEEeecCC-------------CcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCC
Confidence 58999999998887765432 11111111112335544433222 35799999998887777521
Q ss_pred CCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEE-cCCEEEEEeCCCC
Q 008260 291 GKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVH-AERYLLIFGGGSH 369 (572)
Q Consensus 291 g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~-~~~~lyv~GG~~~ 369 (572)
+..-........+.+|++.....+ ...+|++|+.+...+.+... ..+.. ..... +++.|++.. ...
T Consensus 289 ---~~~~~~~~~spDG~~i~f~s~~~g----~~~Iy~~d~~g~~~~~lt~~----~~~~~-~~~~SpdG~~ia~~~-~~~ 355 (435)
T PRK05137 289 ---PAIDTSPSYSPDGSQIVFESDRSG----SPQLYVMNADGSNPRRISFG----GGRYS-TPVWSPRGDLIAFTK-QGG 355 (435)
T ss_pred ---CCccCceeEcCCCCEEEEEECCCC----CCeEEEEECCCCCeEEeecC----CCccc-CeEECCCCCEEEEEE-cCC
Confidence 111111111112345554322211 24699999988877777532 11222 22222 344444433 222
Q ss_pred CcCcCcEEEEECCCCcEEee
Q 008260 370 AACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 370 ~~~~~~v~~yd~~t~~W~~v 389 (572)
+ ...++.+|+.+.....+
T Consensus 356 ~--~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 356 G--QFSIGVMKPDGSGERIL 373 (435)
T ss_pred C--ceEEEEEECCCCceEec
Confidence 1 24689999877666554
No 84
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=91.73 E-value=14 Score=36.13 Aligned_cols=169 Identities=19% Similarity=0.234 Sum_probs=76.4
Q ss_pred CCcceeEEEECCEEEEEccCCCC---cccCcEEEEE----cCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCE
Q 008260 185 ARYEHGAAVVQDKMYIYGGNHNG---RYLSDMHILD----LRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENK 257 (572)
Q Consensus 185 ~R~~~s~~~~~~~lyv~GG~~~~---~~~~~v~~yd----~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~ 257 (572)
...-|+.+.+++.-|.+|=.++. +.+.-+++=| +..-.=+.++..- ...-+..++-.+++.
T Consensus 135 vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey------------~~~AsEPCvkyY~g~ 202 (367)
T PF12217_consen 135 VTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSEY------------ERNASEPCVKYYDGV 202 (367)
T ss_dssp -SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GGG-------------TTEEEEEEEEETTE
T ss_pred eeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeeechhhh------------ccccccchhhhhCCE
Confidence 44568889999888888732222 2222122111 0111122222211 122344455567999
Q ss_pred EEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCC---------CCC---Cce
Q 008260 258 LLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKR---------SLL---NDL 325 (572)
Q Consensus 258 iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~---------~~~---~~v 325 (572)
||+.--.....+.-+.+.+-+.....|+.+... -..-......+.+++.||+||-.-..+ .+. ...
T Consensus 203 LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp--~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRt 280 (367)
T PF12217_consen 203 LYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFP--NNVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRT 280 (367)
T ss_dssp EEEEEEES-TTS---EEEEESSTTSS-EEEE-T--T---SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EE
T ss_pred EEEEEcCcCCCCCcceeeeecccCCchhhcccc--ccccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCce
Confidence 999864443335556777888888899999631 111122334567799999998642111 111 111
Q ss_pred EE-------EECCCCcEEEeeCC---CCCCCcccceEEEEEcCCEEE-EEeCC
Q 008260 326 HI-------LDLETMTWDEIDAV---GVPPSPRSDHAAAVHAERYLL-IFGGG 367 (572)
Q Consensus 326 ~~-------yd~~t~~W~~v~~~---g~~p~~R~~~~~~~~~~~~ly-v~GG~ 367 (572)
+. +.++.-+|..+... |..-..-.+.+.+++.|+.|| ||||.
T Consensus 281 F~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgE 333 (367)
T PF12217_consen 281 FMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGE 333 (367)
T ss_dssp EEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB
T ss_pred EEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCc
Confidence 11 24566677776543 223334455566677777665 88984
No 85
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=91.57 E-value=21 Score=37.78 Aligned_cols=145 Identities=14% Similarity=0.124 Sum_probs=76.0
Q ss_pred eeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccce
Q 008260 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (572)
Q Consensus 272 ~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~ 351 (572)
..++++|+.+.+-..+.. .+......+....++.|++....++ ..+++.+|+.+...+.+.... ... .
T Consensus 214 ~~i~v~d~~~g~~~~~~~---~~~~~~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~---~~~--~ 281 (417)
T TIGR02800 214 PEIYVQDLATGQREKVAS---FPGMNGAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGP---GID--T 281 (417)
T ss_pred cEEEEEECCCCCEEEeec---CCCCccceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCC---CCC--C
Confidence 579999998887666642 1211222111112445666543322 246999999988877775431 111 1
Q ss_pred EEEEE-cCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEE
Q 008260 352 AAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVA 430 (572)
Q Consensus 352 ~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v 430 (572)
..... ++++|++.....+ ...+|.+|+.+..+..+...+ ..........+ +..++
T Consensus 282 ~~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spd----------------g~~i~ 337 (417)
T TIGR02800 282 EPSWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPD----------------GDLIA 337 (417)
T ss_pred CEEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccCeEECCC----------------CCEEE
Confidence 11222 3444554433221 147999999988887775322 11122222222 14555
Q ss_pred EcCCCCCccCcEEEEeCCCCccc
Q 008260 431 FGGYNGRYNNEVHVLKPSHKSTL 453 (572)
Q Consensus 431 ~GG~~~~~~~dv~~yd~~~~~~~ 453 (572)
+...++ ....++.+|+.+.++.
T Consensus 338 ~~~~~~-~~~~i~~~d~~~~~~~ 359 (417)
T TIGR02800 338 FVHREG-GGFNIAVMDLDGGGER 359 (417)
T ss_pred EEEccC-CceEEEEEeCCCCCeE
Confidence 544332 2246899998876543
No 86
>PRK04792 tolB translocation protein TolB; Provisional
Probab=91.30 E-value=24 Score=38.05 Aligned_cols=146 Identities=12% Similarity=0.147 Sum_probs=79.7
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccC
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTY 290 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~ 290 (572)
..+|++|+.+.+-+.+.... ..-...+...-+..|++....++ ..+++.+|+.+.+.+.+...
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~-------------g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~ 304 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFP-------------GINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRH 304 (448)
T ss_pred cEEEEEECCCCCeEEecCCC-------------CCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccC
Confidence 57999999887766654321 10011111112345655543322 35799999999988877532
Q ss_pred CCCCCCCcceEEEE--ECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEE-cCCEEEEEeCC
Q 008260 291 GKPPVSRGGQSVTL--VGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVH-AERYLLIFGGG 367 (572)
Q Consensus 291 g~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~-~~~~lyv~GG~ 367 (572)
. .. ....+. .+..|++.....+ ...+|.+|+.+.+++.+...+ ......+.. +++.|++.+ .
T Consensus 305 ---~-~~-~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g-----~~~~~~~~SpDG~~l~~~~-~ 369 (448)
T PRK04792 305 ---R-AI-DTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEG-----EQNLGGSITPDGRSMIMVN-R 369 (448)
T ss_pred ---C-CC-ccceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCC-----CCCcCeeECCCCCEEEEEE-e
Confidence 1 11 111222 2345655432222 247999999999998875321 111122333 344454443 3
Q ss_pred CCCcCcCcEEEEECCCCcEEeec
Q 008260 368 SHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 368 ~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
..+ ...++++|+.+...+.+.
T Consensus 370 ~~g--~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 370 TNG--KFNIARQDLETGAMQVLT 390 (448)
T ss_pred cCC--ceEEEEEECCCCCeEEcc
Confidence 222 246999999998887764
No 87
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=91.01 E-value=22 Score=37.10 Aligned_cols=150 Identities=17% Similarity=0.160 Sum_probs=82.2
Q ss_pred eeEEEECCEEEEEccCCCCcccCcEEEEEcCCCc--EEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCC
Q 008260 189 HGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWA--WSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK 266 (572)
Q Consensus 189 ~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~ 266 (572)
.+.++.++++|+.+.. ..+++||..+.+ |+.-... +...+.+..++.+|+.+ .+
T Consensus 59 ~~p~v~~~~v~v~~~~------g~v~a~d~~tG~~~W~~~~~~----------------~~~~~p~v~~~~v~v~~-~~- 114 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD------GTVVALDAETGKRLWRVDLDE----------------RLSGGVGADGGLVFVGT-EK- 114 (377)
T ss_pred cceEEECCEEEEECCC------CeEEEEEccCCcEeeeecCCC----------------CcccceEEcCCEEEEEc-CC-
Confidence 4556678888877641 369999987654 7643211 11122334467777643 22
Q ss_pred CCCcceeEEEEECCCC--ceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCC--cEEEeeCCC
Q 008260 267 DPSEIIQVKVFDLQTC--SWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM--TWDEIDAVG 342 (572)
Q Consensus 267 ~~~~~~~v~~yd~~~~--~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~v~~~g 342 (572)
..++.+|..+. .|+.... .. .....++.++.+|+..+ ...++.+|+++. .|+.-....
T Consensus 115 -----g~l~ald~~tG~~~W~~~~~-----~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~ 176 (377)
T TIGR03300 115 -----GEVIALDAEDGKELWRAKLS-----SE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTP 176 (377)
T ss_pred -----CEEEEEECCCCcEeeeeccC-----ce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCC
Confidence 36899998765 4865431 11 11223345777776432 245899998765 487543220
Q ss_pred CCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCC--cEEe
Q 008260 343 VPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM--EWSR 388 (572)
Q Consensus 343 ~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~ 388 (572)
....+...+.++. ++ .+++|..+ ..++.+|+++. .|+.
T Consensus 177 -~~~~~~~~sp~~~-~~-~v~~~~~~-----g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 177 -ALTLRGSASPVIA-DG-GVLVGFAG-----GKLVALDLQTGQPLWEQ 216 (377)
T ss_pred -ceeecCCCCCEEE-CC-EEEEECCC-----CEEEEEEccCCCEeeee
Confidence 0011222233444 45 44455432 36889998765 4764
No 88
>PRK04922 tolB translocation protein TolB; Provisional
Probab=90.86 E-value=26 Score=37.58 Aligned_cols=145 Identities=14% Similarity=0.110 Sum_probs=77.9
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeC-CEEEEEeccCCCCCcceeEEEEECCCCceEEecc
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWE-NKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 289 (572)
..++++|+.+++-..+.... . ........-+ .+|++.....+ ..+++++|+.+.+.+.+..
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~-------------g-~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~ 289 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFR-------------G-INGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTN 289 (433)
T ss_pred cEEEEEECCCCCEEEeccCC-------------C-CccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECcc
Confidence 57999999888776665321 1 1111111123 45554433222 2479999999888766642
Q ss_pred CCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEE-cCCEEEEEeC
Q 008260 290 YGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVH-AERYLLIFGG 366 (572)
Q Consensus 290 ~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~-~~~~lyv~GG 366 (572)
. .. . ....... +.+|++.....+ ...+|.+|..+.+.+.+...+ ......... ++++|++..+
T Consensus 290 ~---~~-~-~~~~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 290 H---FG-I-DTEPTWAPDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred C---CC-C-ccceEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEEC
Confidence 1 11 1 1112222 334554432222 246999999888888775331 222223333 3445555443
Q ss_pred CCCCcCcCcEEEEECCCCcEEeec
Q 008260 367 GSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 367 ~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
. .+. ..++++|+.+.+.+.+.
T Consensus 356 ~-~~~--~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 356 S-GGQ--YRIAVMDLSTGSVRTLT 376 (433)
T ss_pred C-CCc--eeEEEEECCCCCeEECC
Confidence 2 211 37999999988887664
No 89
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.54 E-value=12 Score=37.13 Aligned_cols=112 Identities=20% Similarity=0.220 Sum_probs=75.3
Q ss_pred eEEE-eCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEE
Q 008260 250 SLIP-WENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHIL 328 (572)
Q Consensus 250 s~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y 328 (572)
.... .++.+|.--|..+. +.+..+|+.+.+-.... .+|..-++-+++.++++||..-=. .+..++|
T Consensus 49 GL~~~~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk------~~~~f~y 115 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQ----SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWK------EGTGFVY 115 (264)
T ss_dssp EEEEEETTEEEEEECSTTE----EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESS------SSEEEEE
T ss_pred cEEecCCCEEEEeCCCCCc----EEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEec------CCeEEEE
Confidence 3444 47899998887653 68999999998865554 477777888999999999998543 3568999
Q ss_pred ECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcE
Q 008260 329 DLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (572)
Q Consensus 329 d~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W 386 (572)
|+.+. +.+... +.+..+-+.+.. +..|++.-|. +.++.+||++.+=
T Consensus 116 d~~tl--~~~~~~---~y~~EGWGLt~d-g~~Li~SDGS------~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 116 DPNTL--KKIGTF---PYPGEGWGLTSD-GKRLIMSDGS------SRLYFLDPETFKE 161 (264)
T ss_dssp ETTTT--EEEEEE---E-SSS--EEEEC-SSCEEEE-SS------SEEEEE-TTT-SE
T ss_pred ccccc--eEEEEE---ecCCcceEEEcC-CCEEEEECCc------cceEEECCcccce
Confidence 98764 444433 445677777754 4568888884 6799999987643
No 90
>PRK13684 Ycf48-like protein; Provisional
Probab=90.41 E-value=24 Score=36.46 Aligned_cols=172 Identities=11% Similarity=0.141 Sum_probs=86.6
Q ss_pred ceEEecccCCCCCCCCc-ceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcce
Q 008260 171 DQWIAPPISGQRPKARY-EHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGH 249 (572)
Q Consensus 171 ~~W~~~~~~g~~p~~R~-~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~h 249 (572)
..|+..... .|.... -.++...++..|+.|.. ..+++=+-.-.+|+.+.... ..+....
T Consensus 76 ~tW~~~~~~--~~~~~~~l~~v~~~~~~~~~~G~~------g~i~~S~DgG~tW~~~~~~~------------~~~~~~~ 135 (334)
T PRK13684 76 ETWEERSLD--LPEENFRLISISFKGDEGWIVGQP------SLLLHTTDGGKNWTRIPLSE------------KLPGSPY 135 (334)
T ss_pred CCceECccC--CcccccceeeeEEcCCcEEEeCCC------ceEEEECCCCCCCeEccCCc------------CCCCCce
Confidence 389987542 222222 22333345667776531 22444333446899875321 0111122
Q ss_pred eEEEe-CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEE
Q 008260 250 SLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHIL 328 (572)
Q Consensus 250 s~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y 328 (572)
.+..+ ++.+|+.|.. ..+++-+-.-.+|+.+.. +..-.-+.+....+..|+..|..+ .++.-
T Consensus 136 ~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G------~i~~s 198 (334)
T PRK13684 136 LITALGPGTAEMATNV-------GAIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRG------NFYST 198 (334)
T ss_pred EEEEECCCcceeeecc-------ceEEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCc------eEEEE
Confidence 23333 3456665532 135554445679999863 222233444444444444444322 23332
Q ss_pred -ECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEE--ECCCCcEEeec
Q 008260 329 -DLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVL--DLQTMEWSRPT 390 (572)
Q Consensus 329 -d~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~y--d~~t~~W~~v~ 390 (572)
|....+|+.+.. +..+..+++....++.++++|... ..++ +-.-.+|+.+.
T Consensus 199 ~~~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~ 252 (334)
T PRK13684 199 WEPGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPI 252 (334)
T ss_pred cCCCCCeEEEeeC----CCcccceeeeEcCCCCEEEEecCC-------EEEEccCCCCCcccccc
Confidence 344567998853 455666666666666788887532 2334 22345899764
No 91
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.37 E-value=21 Score=35.75 Aligned_cols=127 Identities=20% Similarity=0.215 Sum_probs=70.9
Q ss_pred cceeEEEECCEEEEEccCC----------CC-------cccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcce
Q 008260 187 YEHGAAVVQDKMYIYGGNH----------NG-------RYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGH 249 (572)
Q Consensus 187 ~~~s~~~~~~~lyv~GG~~----------~~-------~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~h 249 (572)
.+.++..+++.|| ||||- .+ ...+.++.||.++.+-+.+=... -.-+..-++-
T Consensus 38 TYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkes---------ih~~~~WaGE 107 (339)
T PF09910_consen 38 TYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKES---------IHDKTKWAGE 107 (339)
T ss_pred cceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecc---------cCCccccccc
Confidence 4456666778777 78862 11 13467999999887743331111 0001111111
Q ss_pred eE-EE---eCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCce
Q 008260 250 SL-IP---WENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDL 325 (572)
Q Consensus 250 s~-~~---~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v 325 (572)
.. .. ++++|++.-+- +...--||..|..+..=+.+... |.. -.+.+.+..+|- ...-..-.+.+
T Consensus 108 VSdIlYdP~~D~LLlAR~D---Gh~nLGvy~ldr~~g~~~~L~~~---ps~---KG~~~~D~a~F~---i~~~~~g~~~i 175 (339)
T PF09910_consen 108 VSDILYDPYEDRLLLARAD---GHANLGVYSLDRRTGKAEKLSSN---PSL---KGTLVHDYACFG---INNFHKGVSGI 175 (339)
T ss_pred hhheeeCCCcCEEEEEecC---CcceeeeEEEcccCCceeeccCC---CCc---CceEeeeeEEEe---ccccccCCceE
Confidence 11 11 25788877542 23445789999999988888632 332 223333333332 22222236789
Q ss_pred EEEECCCCcE
Q 008260 326 HILDLETMTW 335 (572)
Q Consensus 326 ~~yd~~t~~W 335 (572)
.+||+.+.+|
T Consensus 176 ~~~Dli~~~~ 185 (339)
T PF09910_consen 176 HCLDLISGKW 185 (339)
T ss_pred EEEEccCCeE
Confidence 9999999999
No 92
>smart00284 OLF Olfactomedin-like domains.
Probab=90.34 E-value=20 Score=35.41 Aligned_cols=199 Identities=11% Similarity=0.030 Sum_probs=101.4
Q ss_pred ecceEEecccCCCCCCCCcceeEEEECCEEEEEccCCCCcccCcEEEEEc----CCCcEEEeeecccccCCCCCCCCCCC
Q 008260 169 VYDQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDL----RSWAWSKIQAKAVAESTESPSPALLT 244 (572)
Q Consensus 169 ~~~~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~----~t~~W~~~~~~~~~~~~~~~~~~~p~ 244 (572)
.+..|.+-+. |.... ++++|++.|.. ...+.++.|.- ...++.+.-. +|.
T Consensus 19 ~~GaWmkD~~----~~~~~-------~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~-------------Lp~ 72 (255)
T smart00284 19 KSGAWMKDPL----WNTTK-------KSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHP-------------LPH 72 (255)
T ss_pred ccceeecCCC----CCCCC-------CceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEE-------------CCC
Confidence 4578987763 21111 47899987743 22344666642 2233322222 256
Q ss_pred CCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCC---------cc---eEEEEECCEEEEE
Q 008260 245 PCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSR---------GG---QSVTLVGTSLVIF 312 (572)
Q Consensus 245 ~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R---------~~---~~~~~~~~~iyv~ 312 (572)
+-.|-..+++++.+|..-.. ...|-.||+.+.+-.... .+|.+. .+ .=.++.++-|+|+
T Consensus 73 ~~~GtG~VVYngslYY~~~~------s~~iiKydL~t~~v~~~~---~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvI 143 (255)
T smart00284 73 AGQGTGVVVYNGSLYFNKFN------SHDICRFDLTTETYQKEP---LLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVI 143 (255)
T ss_pred ccccccEEEECceEEEEecC------CccEEEEECCCCcEEEEE---ecCccccccccccccCCCccEEEEEcCCceEEE
Confidence 67777888999999996443 356999999998764333 122221 11 1234445566666
Q ss_pred ecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccC
Q 008260 313 GGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQ 392 (572)
Q Consensus 313 GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~ 392 (572)
=....... .=.|-.+|+.+..-.+.=.. +.++...+.+.+--+.||++-.. ......-.+.||+.+.+=..+..
T Consensus 144 Yat~~~~g-~ivvSkLnp~tL~ve~tW~T---~~~k~sa~naFmvCGvLY~~~s~-~~~~~~I~yayDt~t~~~~~~~i- 217 (255)
T smart00284 144 YATEQNAG-KIVISKLNPATLTIENTWIT---TYNKRSASNAFMICGILYVTRSL-GSKGEKVFYAYDTNTGKEGHLDI- 217 (255)
T ss_pred EeccCCCC-CEEEEeeCcccceEEEEEEc---CCCcccccccEEEeeEEEEEccC-CCCCcEEEEEEECCCCccceeee-
Confidence 44322211 11245667766543332222 22232222222223469988531 11112347899998876444331
Q ss_pred CCCCCCccccEEEEECC
Q 008260 393 GEIPTPRAGHAGVTIGE 409 (572)
Q Consensus 393 g~~p~~R~~~~~~~~~~ 409 (572)
.++.+...+++.-.+-
T Consensus 218 -~f~n~y~~~s~l~YNP 233 (255)
T smart00284 218 -PFENMYEYISMLDYNP 233 (255)
T ss_pred -eeccccccceeceeCC
Confidence 2444444445555443
No 93
>PRK04922 tolB translocation protein TolB; Provisional
Probab=90.32 E-value=29 Score=37.23 Aligned_cols=106 Identities=14% Similarity=0.072 Sum_probs=57.4
Q ss_pred ceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccc
Q 008260 271 IIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (572)
Q Consensus 271 ~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~ 350 (572)
...++++|+.+.+-+.+.. .+.........-.+++|++....++ ..+++++|+.+..-+.+... . ...
T Consensus 227 ~~~l~~~dl~~g~~~~l~~---~~g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~---~--~~~ 294 (433)
T PRK04922 227 RSAIYVQDLATGQRELVAS---FRGINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNH---F--GID 294 (433)
T ss_pred CcEEEEEECCCCCEEEecc---CCCCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccC---C--CCc
Confidence 3578999998888776652 2211111111112446655433322 24799999998887666432 1 111
Q ss_pred eEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 351 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
.......++.-++|.....+ ...+|.+|..+.+.+.+.
T Consensus 295 ~~~~~spDG~~l~f~sd~~g--~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDRGG--RPQIYRVAASGGSAERLT 332 (433)
T ss_pred cceEECCCCCEEEEEECCCC--CceEEEEECCCCCeEEee
Confidence 22233334433344321111 147999999888888775
No 94
>PRK00178 tolB translocation protein TolB; Provisional
Probab=90.19 E-value=20 Score=38.18 Aligned_cols=144 Identities=13% Similarity=0.076 Sum_probs=78.9
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE-eC-CEEEEEeccCCCCCcceeEEEEECCCCceEEec
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WE-NKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLK 288 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 288 (572)
..+|++|+.+.+-+.+.... ........ -+ .+|++..-..+ ..+++++|+.+.+.+.+.
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~---------------g~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt 283 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFE---------------GLNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVT 283 (430)
T ss_pred CEEEEEECCCCCEEEccCCC---------------CCcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcc
Confidence 47999999988777664321 00111111 13 45554332221 257999999999888775
Q ss_pred cCCCCCCCCcceEEEE--ECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEE-cCCEEEEEe
Q 008260 289 TYGKPPVSRGGQSVTL--VGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVH-AERYLLIFG 365 (572)
Q Consensus 289 ~~g~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~-~~~~lyv~G 365 (572)
.. +. . ...... .+++|++.....+ ...++.+|+.+.+++++...+ ......... +++.|++..
T Consensus 284 ~~---~~-~-~~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 284 NH---PA-I-DTEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVMVH 349 (430)
T ss_pred cC---CC-C-cCCeEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEEEE
Confidence 21 11 1 111222 2445665532221 246999999999888875321 122222222 344555544
Q ss_pred CCCCCcCcCcEEEEECCCCcEEeec
Q 008260 366 GGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 366 G~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
... + ...++.+|+.+...+.+.
T Consensus 350 ~~~-~--~~~l~~~dl~tg~~~~lt 371 (430)
T PRK00178 350 RQD-G--NFHVAAQDLQRGSVRILT 371 (430)
T ss_pred ccC-C--ceEEEEEECCCCCEEEcc
Confidence 322 2 236999999998887774
No 95
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=89.88 E-value=21 Score=34.97 Aligned_cols=223 Identities=16% Similarity=0.227 Sum_probs=96.0
Q ss_pred eeEEEECCEEEEEccC--CCCcccCcEEEEE---cCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEec
Q 008260 189 HGAAVVQDKMYIYGGN--HNGRYLSDMHILD---LRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAG 263 (572)
Q Consensus 189 ~s~~~~~~~lyv~GG~--~~~~~~~~v~~yd---~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG 263 (572)
.++.+++++||.+=-. -.+..+...+.|| ...+.|++..-.... +........-.-|+.+.+++.-|.+|=
T Consensus 78 mSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~----~~~~a~~~vTe~HSFa~i~~~~fA~Gy 153 (367)
T PF12217_consen 78 MSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIA----SFTSAGVAVTELHSFATIDDNQFAVGY 153 (367)
T ss_dssp B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-T----T--------SEEEEEEE-SSS-EEEEE
T ss_pred eeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeeccccc----ccccccceeeeeeeeeEecCCceeEEe
Confidence 4566889999987431 1223333445555 356778765432100 000111224467899999998889997
Q ss_pred cCCCCCcc-eeEEEEEC-----CCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEE
Q 008260 264 HTKDPSEI-IQVKVFDL-----QTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDE 337 (572)
Q Consensus 264 ~~~~~~~~-~~v~~yd~-----~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 337 (572)
++++-... -.+..|.. ..-.=+.++. .....-+-.|.-..++.||+.---......-..+.+-+.....|+.
T Consensus 154 HnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~s--ey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~s 231 (367)
T PF12217_consen 154 HNGDVSPRELGFLYFSDAFASPGVFVRRIIPS--EYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSS 231 (367)
T ss_dssp EE-SSSS-EEEEEEETTTTT-TT--EEEE--G--GG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EE
T ss_pred ccCCCCcceeeEEEecccccCCcceeeeechh--hhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhh
Confidence 77662221 12222211 1111122221 1122223334455699999985333322234567787888889999
Q ss_pred eeCCCCCCCcccceEEEEEcCCEEEEEeCCC----------CCcCc---CcEEEE-------ECCCCcEEeecc---CCC
Q 008260 338 IDAVGVPPSPRSDHAAAVHAERYLLIFGGGS----------HAACF---NDLHVL-------DLQTMEWSRPTQ---QGE 394 (572)
Q Consensus 338 v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~----------~~~~~---~~v~~y-------d~~t~~W~~v~~---~g~ 394 (572)
+.... ..-....-.+..+ +.||+||-.. .+.+. ..++.. .++.-+|..+.. +|.
T Consensus 232 lrfp~--nvHhtnlPFakvg-D~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ 308 (367)
T PF12217_consen 232 LRFPN--NVHHTNLPFAKVG-DVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGG 308 (367)
T ss_dssp EE-TT-----SS---EEEET-TEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--S
T ss_pred ccccc--cccccCCCceeeC-CEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccc
Confidence 86431 1111122234444 4699998521 11111 112222 345566777643 244
Q ss_pred CCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCC
Q 008260 395 IPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN 435 (572)
Q Consensus 395 ~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~ 435 (572)
....-.+-+++++.++| .-|+|||.+
T Consensus 309 ivNSavGVGSv~~KD~~---------------lyy~FGgED 334 (367)
T PF12217_consen 309 IVNSAVGVGSVVVKDGW---------------LYYIFGGED 334 (367)
T ss_dssp SS---SEEEEEEEETTE---------------EEEEEEEB-
T ss_pred cccccccceeEEEECCE---------------EEEEecCcc
Confidence 44445556666665532 567899964
No 96
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=89.46 E-value=27 Score=35.65 Aligned_cols=158 Identities=11% Similarity=0.029 Sum_probs=70.9
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcC-CCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCC-EEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLR-SWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~-t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~-~iyv~GG~~~~~~~~~ 272 (572)
++.||+.+. . .+.+..|++. +.++..+.... ......|.+..-++ .||+.. .. .+
T Consensus 46 ~~~lyv~~~-~----~~~i~~~~~~~~g~l~~~~~~~------------~~~~p~~i~~~~~g~~l~v~~-~~-----~~ 102 (330)
T PRK11028 46 KRHLYVGVR-P----EFRVLSYRIADDGALTFAAESP------------LPGSPTHISTDHQGRFLFSAS-YN-----AN 102 (330)
T ss_pred CCEEEEEEC-C----CCcEEEEEECCCCceEEeeeec------------CCCCceEEEECCCCCEEEEEE-cC-----CC
Confidence 456777543 1 2457777775 45565544321 00111222222244 455553 32 23
Q ss_pred eEEEEECCCCc--eEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCc-EEEeeCC-CCCCC
Q 008260 273 QVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMT-WDEIDAV-GVPPS 346 (572)
Q Consensus 273 ~v~~yd~~~~~--W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~-W~~v~~~-g~~p~ 346 (572)
.+.+||+.++. ...+. ..+.....|.+++. ++.+|+..- -.+.+.+||+++.. ....... ...+.
T Consensus 103 ~v~v~~~~~~g~~~~~~~---~~~~~~~~~~~~~~p~g~~l~v~~~------~~~~v~v~d~~~~g~l~~~~~~~~~~~~ 173 (330)
T PRK11028 103 CVSVSPLDKDGIPVAPIQ---IIEGLEGCHSANIDPDNRTLWVPCL------KEDRIRLFTLSDDGHLVAQEPAEVTTVE 173 (330)
T ss_pred eEEEEEECCCCCCCCcee---eccCCCcccEeEeCCCCCEEEEeeC------CCCEEEEEEECCCCcccccCCCceecCC
Confidence 67778775432 11222 11222334555554 346666542 14569999987632 2110000 00011
Q ss_pred cccceEEEEE-cCCEEEEEeCCCCCcCcCcEEEEECC--CCcEEee
Q 008260 347 PRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQ--TMEWSRP 389 (572)
Q Consensus 347 ~R~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~v 389 (572)
...-+.+++. +++++|+.-..+ +.+.+||.. +.+.+.+
T Consensus 174 g~~p~~~~~~pdg~~lyv~~~~~-----~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 174 GAGPRHMVFHPNQQYAYCVNELN-----SSVDVWQLKDPHGEIECV 214 (330)
T ss_pred CCCCceEEECCCCCEEEEEecCC-----CEEEEEEEeCCCCCEEEE
Confidence 1111223333 345677764322 567777765 4455443
No 97
>smart00284 OLF Olfactomedin-like domains.
Probab=89.19 E-value=24 Score=34.79 Aligned_cols=167 Identities=16% Similarity=0.084 Sum_probs=89.4
Q ss_pred CCEEEEEeccCCCCCcceeEEEEEC----CCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEEC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDL----QTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDL 330 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~----~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~ 330 (572)
++++|+..+.. ...+.++.|.. ....+.+.- .+|.+-.+.+.++.++.||.--.. .+.+..||+
T Consensus 34 ~~~~wv~~~~~---~~~~~v~ey~~~~~f~~~~~~~~~---~Lp~~~~GtG~VVYngslYY~~~~------s~~iiKydL 101 (255)
T smart00284 34 KSLYWYMPLNT---RVLRSVREYSSMSDFQMGKNPTDH---PLPHAGQGTGVVVYNGSLYFNKFN------SHDICRFDL 101 (255)
T ss_pred CceEEEEcccc---CCCcEEEEecCHHHHhccCCceEE---ECCCccccccEEEECceEEEEecC------CccEEEEEC
Confidence 47889887653 12345666642 333333222 467777788889999999985432 467999999
Q ss_pred CCCcEEEeeCC---C---CCCC---cccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccc
Q 008260 331 ETMTWDEIDAV---G---VPPS---PRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAG 401 (572)
Q Consensus 331 ~t~~W~~v~~~---g---~~p~---~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~ 401 (572)
.+.+-.....+ + ..|- +-...-.++-.++ |+|+=....+.-.--|-++|+.+.+-.+.=.. ..+.+..+
T Consensus 102 ~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~G-LWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T-~~~k~sa~ 179 (255)
T smart00284 102 TTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENG-LWVIYATEQNAGKIVISKLNPATLTIENTWIT-TYNKRSAS 179 (255)
T ss_pred CCCcEEEEEecCccccccccccccCCCccEEEEEcCCc-eEEEEeccCCCCCEEEEeeCcccceEEEEEEc-CCCccccc
Confidence 99886543322 0 0111 1111223443444 66553221111111244667766543222111 25556666
Q ss_pred cEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCCccc
Q 008260 402 HAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKSTL 453 (572)
Q Consensus 402 ~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~~~~ 453 (572)
.+-+++| .||++-..+.....=.+.||..++.-.
T Consensus 180 naFmvCG------------------vLY~~~s~~~~~~~I~yayDt~t~~~~ 213 (255)
T smart00284 180 NAFMICG------------------ILYVTRSLGSKGEKVFYAYDTNTGKEG 213 (255)
T ss_pred ccEEEee------------------EEEEEccCCCCCcEEEEEEECCCCccc
Confidence 5555554 688885433222333678998876433
No 98
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=88.70 E-value=6.8 Score=41.13 Aligned_cols=151 Identities=19% Similarity=0.179 Sum_probs=81.6
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCc
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT 334 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 334 (572)
...+.+.+|.+.. -.++..|-.++. .+...---..|....+....+...++++|. ..-+|.||+.+.+
T Consensus 224 ~~plllvaG~d~~----lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r------rky~ysyDle~ak 291 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT----LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR------RKYLYSYDLETAK 291 (514)
T ss_pred CCceEEEecCCCc----EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc------ceEEEEeeccccc
Confidence 4568888888653 345555555554 332110001112211112223337777775 3448999999999
Q ss_pred EEEeeCCCCCCCcccceEE-EEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe-eccCCCCCCCccccEEEEECCccc
Q 008260 335 WDEIDAVGVPPSPRSDHAA-AVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR-PTQQGEIPTPRAGHAGVTIGENWF 412 (572)
Q Consensus 335 W~~v~~~g~~p~~R~~~~~-~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~-v~~~g~~p~~R~~~~~~~~~~~~~ 412 (572)
-+.+.+....+ .+..+.. +...++ ++++-|.. .-|+.+...|++|-. +. ++ .+.. ..+...+
T Consensus 292 ~~k~~~~~g~e-~~~~e~FeVShd~~-fia~~G~~-----G~I~lLhakT~eli~s~K----ie-G~v~-~~~fsSd--- 355 (514)
T KOG2055|consen 292 VTKLKPPYGVE-EKSMERFEVSHDSN-FIAIAGNN-----GHIHLLHAKTKELITSFK----IE-GVVS-DFTFSSD--- 355 (514)
T ss_pred cccccCCCCcc-cchhheeEecCCCC-eEEEcccC-----ceEEeehhhhhhhhheee----ec-cEEe-eEEEecC---
Confidence 99987664333 2223333 333344 55555543 357788888888743 11 11 1111 1111111
Q ss_pred cceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCC
Q 008260 413 LGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 413 iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
..+|++.||+. +||++|+..+
T Consensus 356 ------------sk~l~~~~~~G-----eV~v~nl~~~ 376 (514)
T KOG2055|consen 356 ------------SKELLASGGTG-----EVYVWNLRQN 376 (514)
T ss_pred ------------CcEEEEEcCCc-----eEEEEecCCc
Confidence 23899999864 6999999887
No 99
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.64 E-value=9.5 Score=37.72 Aligned_cols=158 Identities=18% Similarity=0.129 Sum_probs=92.2
Q ss_pred eEEE-ECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCC
Q 008260 190 GAAV-VQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDP 268 (572)
Q Consensus 190 s~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~ 268 (572)
+... .++.||.--|..+. +.+.++|+.+++-.....+ |...++-.++.++++||.+-=.
T Consensus 49 GL~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~~l-------------~~~~FgEGit~~~d~l~qLTWk---- 108 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSVPL-------------PPRYFGEGITILGDKLYQLTWK---- 108 (264)
T ss_dssp EEEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEEE--------------TTT--EEEEEEETTEEEEEESS----
T ss_pred cEEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEEEC-------------CccccceeEEEECCEEEEEEec----
Confidence 3444 46888888775553 4789999999987666554 4667888999999999999432
Q ss_pred CcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEE-eeCCCCCCCc
Q 008260 269 SEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDE-IDAVGVPPSP 347 (572)
Q Consensus 269 ~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~-v~~~g~~p~~ 347 (572)
....++||+.+- +.+. ..+.+.-+.+.|..+..||+--| ++.++.+||++.+=.. +...
T Consensus 109 --~~~~f~yd~~tl--~~~~---~~~y~~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~f~~~~~i~V~------ 168 (264)
T PF05096_consen 109 --EGTGFVYDPNTL--KKIG---TFPYPGEGWGLTSDGKRLIMSDG-------SSRLYFLDPETFKEVRTIQVT------ 168 (264)
T ss_dssp --SSEEEEEETTTT--EEEE---EEE-SSS--EEEECSSCEEEE-S-------SSEEEEE-TTT-SEEEEEE-E------
T ss_pred --CCeEEEEccccc--eEEE---EEecCCcceEEEcCCCEEEEECC-------ccceEEECCcccceEEEEEEE------
Confidence 346899999764 3443 23344578899988889999877 4679999998765322 2111
Q ss_pred ccceEEEEEcCCEEEEEeCC--CCCcCcCcEEEEECCCCcEEee
Q 008260 348 RSDHAAAVHAERYLLIFGGG--SHAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 348 R~~~~~~~~~~~~lyv~GG~--~~~~~~~~v~~yd~~t~~W~~v 389 (572)
..+...-.++ . |=.++|. .+--..+.|.+.||++..-...
T Consensus 169 ~~g~pv~~LN-E-LE~i~G~IyANVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 169 DNGRPVSNLN-E-LEYINGKIYANVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp ETTEE---EE-E-EEEETTEEEEEETTSSEEEEEETTT-BEEEE
T ss_pred ECCEECCCcE-e-EEEEcCEEEEEeCCCCeEEEEeCCCCeEEEE
Confidence 1111111121 1 2222331 0111236689999999876553
No 100
>PRK00178 tolB translocation protein TolB; Provisional
Probab=87.70 E-value=42 Score=35.76 Aligned_cols=102 Identities=14% Similarity=0.134 Sum_probs=57.6
Q ss_pred eeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCccc
Q 008260 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (572)
Q Consensus 272 ~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~ 349 (572)
..++++|+.+.+-+.+... +. ........ +++|++..-.++ ..+++++|+.+...+.+... + ..
T Consensus 223 ~~l~~~~l~~g~~~~l~~~---~g--~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~--~~ 288 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNF---EG--LNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNH---P--AI 288 (430)
T ss_pred CEEEEEECCCCCEEEccCC---CC--CcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccC---C--CC
Confidence 4799999998887776521 11 11112222 345654432222 25799999999988877532 1 11
Q ss_pred ceEEEEE-cCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 350 DHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 350 ~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
....... +++.|++.....+ ...+|.+|+.+.+++++.
T Consensus 289 ~~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 289 DTEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVT 327 (430)
T ss_pred cCCeEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEee
Confidence 1122223 3344554432211 247999999998888774
No 101
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=87.68 E-value=7.6 Score=33.86 Aligned_cols=87 Identities=16% Similarity=0.238 Sum_probs=59.7
Q ss_pred EEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcc
Q 008260 192 AVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEI 271 (572)
Q Consensus 192 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~ 271 (572)
+.+++-||-..-. .....+-+.+||+.+.+|+.+.... ...........+.++|+|-++.-........
T Consensus 2 icinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~----------~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~ 70 (129)
T PF08268_consen 2 ICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPE----------DPYSSDCSSTLIEYKGKLALVSYNDQGEPDS 70 (129)
T ss_pred EEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeee----------eeccccCccEEEEeCCeEEEEEecCCCCcce
Confidence 3467888766553 3334567999999999999886520 1134567777888899999886655432345
Q ss_pred eeEEEE-ECCCCceEEecc
Q 008260 272 IQVKVF-DLQTCSWSTLKT 289 (572)
Q Consensus 272 ~~v~~y-d~~~~~W~~~~~ 289 (572)
-++|++ |....+|.+...
T Consensus 71 ~~iWvLeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 71 IDIWVLEDYEKQEWSKKHI 89 (129)
T ss_pred EEEEEeeccccceEEEEEE
Confidence 688888 456778998754
No 102
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.12 E-value=44 Score=35.41 Aligned_cols=185 Identities=11% Similarity=0.119 Sum_probs=88.9
Q ss_pred ceEEecccCCCCCCCCcceeEEEEC-CEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCC-----CCCCCCCC
Q 008260 171 DQWIAPPISGQRPKARYEHGAAVVQ-DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTE-----SPSPALLT 244 (572)
Q Consensus 171 ~~W~~~~~~g~~p~~R~~~s~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~-----~~~~~~p~ 244 (572)
..|+.++....+|.. .+....++ +.++++|. ...+++-+-...+|+.+.......+.. ......+.
T Consensus 166 ~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~------~G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y 237 (398)
T PLN00033 166 ETWERIPLSPKLPGE--PVLIKATGPKSAEMVTD------EGAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYY 237 (398)
T ss_pred CCceECccccCCCCC--ceEEEEECCCceEEEec------cceEEEECCCCCCceEccccccccccccccccccccccee
Confidence 489987642222322 23333444 56777774 123666665667898763221000000 00000011
Q ss_pred CCcceeEEEe-CCEEEEEeccCCCCCcceeEEE-EECCCCceEEeccCCCCCCCCcceEEEE-ECCEEEEEecCCCCCCC
Q 008260 245 PCAGHSLIPW-ENKLLSIAGHTKDPSEIIQVKV-FDLQTCSWSTLKTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKRSL 321 (572)
Q Consensus 245 ~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~v~~-yd~~~~~W~~~~~~g~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~ 321 (572)
.-..+.+... ++.++++|-.. .+++ .|.-...|+.+. .+..+.-.++.. .++.+++.|..
T Consensus 238 ~Gsf~~v~~~~dG~~~~vg~~G-------~~~~s~d~G~~~W~~~~----~~~~~~l~~v~~~~dg~l~l~g~~------ 300 (398)
T PLN00033 238 TGTFSTVNRSPDGDYVAVSSRG-------NFYLTWEPGQPYWQPHN----RASARRIQNMGWRADGGLWLLTRG------ 300 (398)
T ss_pred ccceeeEEEcCCCCEEEEECCc-------cEEEecCCCCcceEEec----CCCccceeeeeEcCCCCEEEEeCC------
Confidence 1112222222 45566665432 2333 333333499886 344444444444 36788887743
Q ss_pred CCceEEEECCCC-----cEEEeeCCCCCCCccc-ceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeecc
Q 008260 322 LNDLHILDLETM-----TWDEIDAVGVPPSPRS-DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQ 391 (572)
Q Consensus 322 ~~~v~~yd~~t~-----~W~~v~~~g~~p~~R~-~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~ 391 (572)
..++.-+-... .|..+.. +..+. ...+...+++.++++|.. .-+++-...-++|+.+..
T Consensus 301 -G~l~~S~d~G~~~~~~~f~~~~~----~~~~~~l~~v~~~~d~~~~a~G~~------G~v~~s~D~G~tW~~~~~ 365 (398)
T PLN00033 301 -GGLYVSKGTGLTEEDFDFEEADI----KSRGFGILDVGYRSKKEAWAAGGS------GILLRSTDGGKSWKRDKG 365 (398)
T ss_pred -ceEEEecCCCCcccccceeeccc----CCCCcceEEEEEcCCCcEEEEECC------CcEEEeCCCCcceeEccc
Confidence 12333332333 3444432 22233 334444566779999874 235566667789999753
No 103
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=87.04 E-value=6.9 Score=34.12 Aligned_cols=87 Identities=18% Similarity=0.199 Sum_probs=58.2
Q ss_pred EEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEE-EC
Q 008260 252 IPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHIL-DL 330 (572)
Q Consensus 252 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~y-d~ 330 (572)
+.+||-+|-..-. .......|-+||..+.+|+.+...............+.++|+|-++.-......-.=++|++ |.
T Consensus 2 icinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 2 ICINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred EEECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 3468888887766 22456789999999999999964211234455566777789888876543332113468888 56
Q ss_pred CCCcEEEeeC
Q 008260 331 ETMTWDEIDA 340 (572)
Q Consensus 331 ~t~~W~~v~~ 340 (572)
++..|++...
T Consensus 80 ~k~~Wsk~~~ 89 (129)
T PF08268_consen 80 EKQEWSKKHI 89 (129)
T ss_pred ccceEEEEEE
Confidence 6788987754
No 104
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.78 E-value=15 Score=38.94 Aligned_cols=113 Identities=16% Similarity=0.224 Sum_probs=63.2
Q ss_pred EeCCEEEEEeccCCCCCcceeEEEEECCCCce-EEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECC
Q 008260 253 PWENKLLSIAGHTKDPSEIIQVKVFDLQTCSW-STLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLE 331 (572)
Q Consensus 253 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~ 331 (572)
..+|+|++.|+..+- |.+||..+..- ..+. ....|...--.+..++.+++.|+-+.. +-.+|..
T Consensus 77 R~DG~LlaaGD~sG~------V~vfD~k~r~iLR~~~---ah~apv~~~~f~~~d~t~l~s~sDd~v------~k~~d~s 141 (487)
T KOG0310|consen 77 RSDGRLLAAGDESGH------VKVFDMKSRVILRQLY---AHQAPVHVTKFSPQDNTMLVSGSDDKV------VKYWDLS 141 (487)
T ss_pred ecCCeEEEccCCcCc------EEEeccccHHHHHHHh---hccCceeEEEecccCCeEEEecCCCce------EEEEEcC
Confidence 348999999998664 88999555221 1111 111111122233457889998875332 4445555
Q ss_pred CCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCC-cEEe
Q 008260 332 TMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM-EWSR 388 (572)
Q Consensus 332 t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~-~W~~ 388 (572)
+..- +....+..-.-|. ..+.-.+++|++.||++ ..|-.||+.+. .|..
T Consensus 142 ~a~v-~~~l~~htDYVR~--g~~~~~~~hivvtGsYD-----g~vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 142 TAYV-QAELSGHTDYVRC--GDISPANDHIVVTGSYD-----GKVRLWDTRSLTSRVV 191 (487)
T ss_pred CcEE-EEEecCCcceeEe--eccccCCCeEEEecCCC-----ceEEEEEeccCCceeE
Confidence 5553 3333332233333 23333355799999997 45778888776 4543
No 105
>PRK03629 tolB translocation protein TolB; Provisional
Probab=86.70 E-value=49 Score=35.44 Aligned_cols=146 Identities=14% Similarity=0.108 Sum_probs=76.3
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCC-EEEEEeccCCCCCcceeEEEEECCCCceEEecc
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 289 (572)
..++++|+.+.+-+.+.... . ........-++ +|++.....+ ..+++.+|+.+.+.+++..
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~-------------~-~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~ 284 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFP-------------R-HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTD 284 (429)
T ss_pred cEEEEEECCCCCeEEccCCC-------------C-CcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccC
Confidence 47899998887766554321 1 01111111244 5555433221 2369999999988877752
Q ss_pred CCCCCCCCcceEEEEE-CC-EEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCC
Q 008260 290 YGKPPVSRGGQSVTLV-GT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGG 367 (572)
Q Consensus 290 ~g~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~ 367 (572)
. +.. ....... ++ .|++.....+ ...+|.+|+.+..-+.+...+ ..........++..+++.+.
T Consensus 285 ~---~~~--~~~~~wSPDG~~I~f~s~~~g----~~~Iy~~d~~~g~~~~lt~~~-----~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 285 G---RSN--NTEPTWFPDSQNLAYTSDQAG----RPQVYKVNINGGAPQRITWEG-----SQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred C---CCC--cCceEECCCCCEEEEEeCCCC----CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEEc
Confidence 1 111 1112222 33 4544332211 246899999888777664321 11112333334334444332
Q ss_pred CCCcCcCcEEEEECCCCcEEeec
Q 008260 368 SHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 368 ~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
..+ ...++.+|+.+.+++.+.
T Consensus 351 ~~g--~~~I~~~dl~~g~~~~Lt 371 (429)
T PRK03629 351 NGG--QQHIAKQDLATGGVQVLT 371 (429)
T ss_pred cCC--CceEEEEECCCCCeEEeC
Confidence 222 246999999999888775
No 106
>PRK04043 tolB translocation protein TolB; Provisional
Probab=86.44 E-value=50 Score=35.31 Aligned_cols=148 Identities=12% Similarity=0.114 Sum_probs=84.5
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCC-EEEEEeccCCCCCcceeEEEEECCCCceEEecc
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 289 (572)
.++|++|+.+.+=+.+.... .........-++ +|.+.-... ...++|.+|..+.+++++..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~--------------g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~dl~~g~~~~LT~ 274 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQ--------------GMLVVSDVSKDGSKLLLTMAPK----GQPDIYLYDTNTKTLTQITN 274 (419)
T ss_pred CEEEEEECCCCcEEEEecCC--------------CcEEeeEECCCCCEEEEEEccC----CCcEEEEEECCCCcEEEccc
Confidence 38999999988777765421 111111122243 555544332 13589999999999988853
Q ss_pred CCCCCCCCcceEEEE--ECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCC
Q 008260 290 YGKPPVSRGGQSVTL--VGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGG 367 (572)
Q Consensus 290 ~g~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~ 367 (572)
. +. ....... .+.+||+.-...+ ..+++++|+.+...+++...+. ... ...-.++.|......
T Consensus 275 ~---~~--~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 275 Y---PG--IDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRE 339 (419)
T ss_pred C---CC--ccCccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcC
Confidence 2 21 1111222 2557777654322 3579999999998877754321 121 222234444444332
Q ss_pred CCCc---CcCcEEEEECCCCcEEeecc
Q 008260 368 SHAA---CFNDLHVLDLQTMEWSRPTQ 391 (572)
Q Consensus 368 ~~~~---~~~~v~~yd~~t~~W~~v~~ 391 (572)
.... ...+++++|+.+..++.+..
T Consensus 340 ~~~~~~~~~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 340 TNNEFGKNTFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred CCcccCCCCcEEEEEECCCCCeEECCC
Confidence 2211 23579999999999988854
No 107
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=86.05 E-value=32 Score=32.69 Aligned_cols=105 Identities=13% Similarity=0.113 Sum_probs=51.4
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 333 (572)
++..+++++.+ ..+.+||..+.+....-. .....-.++... ++.+++.|+. ...+.+||+.+.
T Consensus 62 ~~~~l~~~~~~------~~i~i~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~ 125 (289)
T cd00200 62 DGTYLASGSSD------KTIRLWDLETGECVRTLT----GHTSYVSSVAFSPDGRILSSSSR------DKTIKVWDVETG 125 (289)
T ss_pred CCCEEEEEcCC------CeEEEEEcCcccceEEEe----ccCCcEEEEEEcCCCCEEEEecC------CCeEEEEECCCc
Confidence 44566666653 358888887753222211 111112223333 3466666663 245889998754
Q ss_pred cEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCC
Q 008260 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM 384 (572)
Q Consensus 334 ~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~ 384 (572)
+-...-. .....-.+.....++.+++.|..+ ..+..||+.+.
T Consensus 126 ~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~ 167 (289)
T cd00200 126 KCLTTLR----GHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTG 167 (289)
T ss_pred EEEEEec----cCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEcccc
Confidence 4322211 111122233344444455555422 46888988754
No 108
>PRK02889 tolB translocation protein TolB; Provisional
Probab=84.23 E-value=63 Score=34.54 Aligned_cols=145 Identities=11% Similarity=0.036 Sum_probs=74.7
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCC-EEEEEeccCCCCCcceeEEEEECCCCceEEecc
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~-~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 289 (572)
..+|++|+.+.+=..+.... .........-++ +|++....++ ..++|.+|..+...+++..
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~--------------g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~ 281 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFK--------------GSNSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQ 281 (427)
T ss_pred cEEEEEECCCCCEEEeecCC--------------CCccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCC
Confidence 46999999887655543221 011111111244 5554433322 3579999988777666642
Q ss_pred CCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEE-cCCEEEEEeC
Q 008260 290 YGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVH-AERYLLIFGG 366 (572)
Q Consensus 290 ~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~-~~~~lyv~GG 366 (572)
. . .... ..+.. +.+|++.....+ ...+|.+|..+...+.+...+ ......... +++.|+....
T Consensus 282 ~---~-~~~~-~~~wSpDG~~l~f~s~~~g----~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 282 S---S-GIDT-EPFFSPDGRSIYFTSDRGG----APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred C---C-CCCc-CeEEcCCCCEEEEEecCCC----CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEEc
Confidence 1 1 1111 12222 345554432211 246888998888777775321 122222333 3444444333
Q ss_pred CCCCcCcCcEEEEECCCCcEEeec
Q 008260 367 GSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 367 ~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
..+. ..++++|+.+.+...+.
T Consensus 348 -~~g~--~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 348 -VGGA--FKLYVQDLATGQVTALT 368 (427)
T ss_pred -cCCc--EEEEEEECCCCCeEEcc
Confidence 2221 36999999988877664
No 109
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=84.03 E-value=39 Score=32.02 Aligned_cols=105 Identities=17% Similarity=0.182 Sum_probs=51.0
Q ss_pred CEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEEC-CEEEEEecCCCCCCCCCceEEEECCCCc
Q 008260 256 NKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVG-TSLVIFGGEDAKRSLLNDLHILDLETMT 334 (572)
Q Consensus 256 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 334 (572)
+.+++.|+.+ ..+.+||+.+.+-...-. .....-.++.... +.+++.|+. -+.+.+||+.+.+
T Consensus 105 ~~~~~~~~~~------~~i~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~------~~~i~i~d~~~~~ 168 (289)
T cd00200 105 GRILSSSSRD------KTIKVWDVETGKCLTTLR----GHTDWVNSVAFSPDGTFVASSSQ------DGTIKLWDLRTGK 168 (289)
T ss_pred CCEEEEecCC------CeEEEEECCCcEEEEEec----cCCCcEEEEEEcCcCCEEEEEcC------CCcEEEEEccccc
Confidence 4666666633 258889987544322211 1111122333333 445444442 2358889886443
Q ss_pred -EEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcE
Q 008260 335 -WDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (572)
Q Consensus 335 -W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W 386 (572)
...+.. ....-.+.....++..+++++.+ ..+..||..+.+.
T Consensus 169 ~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~ 211 (289)
T cd00200 169 CVATLTG-----HTGEVNSVAFSPDGEKLLSSSSD-----GTIKLWDLSTGKC 211 (289)
T ss_pred cceeEec-----CccccceEEECCCcCEEEEecCC-----CcEEEEECCCCce
Confidence 222221 11122233444444455666542 5688999876443
No 110
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=83.21 E-value=18 Score=39.28 Aligned_cols=77 Identities=26% Similarity=0.384 Sum_probs=47.1
Q ss_pred CcccceEEEEEcCC-EEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCC
Q 008260 346 SPRSDHAAAVHAER-YLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSG 424 (572)
Q Consensus 346 ~~R~~~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g 424 (572)
.|+.+..++...-+ -||+.|-. .+||+|+++..+|-.. +..--...-++-++.
T Consensus 132 IP~~GRDm~y~~~scDly~~gsg------~evYRlNLEqGrfL~P-----~~~~~~~lN~v~in~--------------- 185 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGSG------SEVYRLNLEQGRFLNP-----FETDSGELNVVSINE--------------- 185 (703)
T ss_pred cCcCCccccccCCCccEEEeecC------cceEEEEccccccccc-----cccccccceeeeecC---------------
Confidence 45555555554222 26665532 6899999999998542 111112222333333
Q ss_pred CCEEEEEcCCCCCccCcEEEEeCCCCcc
Q 008260 425 EDVIVAFGGYNGRYNNEVHVLKPSHKST 452 (572)
Q Consensus 425 ~~~l~v~GG~~~~~~~dv~~yd~~~~~~ 452 (572)
.+.|+.+||.+|. |+.+|+.++..
T Consensus 186 ~hgLla~Gt~~g~----VEfwDpR~ksr 209 (703)
T KOG2321|consen 186 EHGLLACGTEDGV----VEFWDPRDKSR 209 (703)
T ss_pred ccceEEecccCce----EEEecchhhhh
Confidence 5579999998765 88899887643
No 111
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=82.18 E-value=87 Score=34.63 Aligned_cols=129 Identities=14% Similarity=0.158 Sum_probs=68.3
Q ss_pred eeEEEECCEEEEEccCCCCcccCcEEEEEcCCC--cEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCC
Q 008260 189 HGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK 266 (572)
Q Consensus 189 ~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~ 266 (572)
.+-++.++.||+... .+.++.+|..+. .|+.-..... ...+...........+..+++||+.. .+
T Consensus 63 stPvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~-----~~~~~~~~~~~~rg~av~~~~v~v~t-~d- 129 (527)
T TIGR03075 63 SQPLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPD-----DVIPVMCCDVVNRGVALYDGKVFFGT-LD- 129 (527)
T ss_pred cCCEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCc-----ccccccccccccccceEECCEEEEEc-CC-
Confidence 455677999998654 136899998875 5875432110 00000001112233456678888642 21
Q ss_pred CCCcceeEEEEECCCCc--eEEeccCCCCCCC-CcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCc--EEEe
Q 008260 267 DPSEIIQVKVFDLQTCS--WSTLKTYGKPPVS-RGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT--WDEI 338 (572)
Q Consensus 267 ~~~~~~~v~~yd~~~~~--W~~~~~~g~~p~~-R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~v 338 (572)
..+.++|..+.+ |+.-.. ..... ....+-++.+++||+-.... .......+..||.+|.+ |+.-
T Consensus 130 -----g~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~-~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 130 -----ARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITGISGG-EFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred -----CEEEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEeeccc-ccCCCcEEEEEECCCCceeEecc
Confidence 368999998765 765421 11111 11223445678776643221 11124568899988764 7643
No 112
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=82.10 E-value=73 Score=34.81 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=44.7
Q ss_pred CCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCc
Q 008260 294 PVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAA 371 (572)
Q Consensus 294 p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~ 371 (572)
..|+.+.-++.. .-.||+.|- -.+||+|+++...|=..-.. ..+-..+.. +..-+.|+.+||.+
T Consensus 131 RIP~~GRDm~y~~~scDly~~gs-------g~evYRlNLEqGrfL~P~~~---~~~~lN~v~-in~~hgLla~Gt~~--- 196 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVGS-------GSEVYRLNLEQGRFLNPFET---DSGELNVVS-INEEHGLLACGTED--- 196 (703)
T ss_pred ecCcCCccccccCCCccEEEeec-------CcceEEEEcccccccccccc---ccccceeee-ecCccceEEecccC---
Confidence 455555555554 335666542 46799999999998433221 111121111 11234599999864
Q ss_pred CcCcEEEEECCCCc
Q 008260 372 CFNDLHVLDLQTME 385 (572)
Q Consensus 372 ~~~~v~~yd~~t~~ 385 (572)
..|+.+|+.+.+
T Consensus 197 --g~VEfwDpR~ks 208 (703)
T KOG2321|consen 197 --GVVEFWDPRDKS 208 (703)
T ss_pred --ceEEEecchhhh
Confidence 568899988764
No 113
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=81.13 E-value=67 Score=32.67 Aligned_cols=146 Identities=14% Similarity=0.161 Sum_probs=70.6
Q ss_pred EEEEEccCCCCcccCcEEEEEcCC-CcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-C-CEEEEEeccCCCCCccee
Q 008260 197 KMYIYGGNHNGRYLSDMHILDLRS-WAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-E-NKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 197 ~lyv~GG~~~~~~~~~v~~yd~~t-~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~-~~iyv~GG~~~~~~~~~~ 273 (572)
++|+..+. -+.+..||+.+ .+++.+.... .....+.++.. + ..||+.+. . ...
T Consensus 3 ~~y~~~~~-----~~~I~~~~~~~~g~l~~~~~~~-------------~~~~~~~l~~spd~~~lyv~~~-~-----~~~ 58 (330)
T PRK11028 3 IVYIASPE-----SQQIHVWNLNHEGALTLLQVVD-------------VPGQVQPMVISPDKRHLYVGVR-P-----EFR 58 (330)
T ss_pred EEEEEcCC-----CCCEEEEEECCCCceeeeeEEe-------------cCCCCccEEECCCCCEEEEEEC-C-----CCc
Confidence 56777542 24688888864 5666655432 11111222222 3 45666433 2 135
Q ss_pred EEEEECC-CCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCc--EEEeeCCCCCCCcc
Q 008260 274 VKVFDLQ-TCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMT--WDEIDAVGVPPSPR 348 (572)
Q Consensus 274 v~~yd~~-~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~v~~~g~~p~~R 348 (572)
+..|++. +.+++.+... +.+..-+.++.. ++.||+.. +. .+.+.+||++++. ...+... +...
T Consensus 59 i~~~~~~~~g~l~~~~~~---~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~~~---~~~~ 126 (330)
T PRK11028 59 VLSYRIADDGALTFAAES---PLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQII---EGLE 126 (330)
T ss_pred EEEEEECCCCceEEeeee---cCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCceeec---cCCC
Confidence 6677765 4456555421 111111223333 34566653 21 3557888876431 1222211 2222
Q ss_pred cceEEEEEcC-CEEEEEeCCCCCcCcCcEEEEECCC
Q 008260 349 SDHAAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQT 383 (572)
Q Consensus 349 ~~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~t 383 (572)
..|++++..+ +.+|+..-. .+.|.+||+.+
T Consensus 127 ~~~~~~~~p~g~~l~v~~~~-----~~~v~v~d~~~ 157 (330)
T PRK11028 127 GCHSANIDPDNRTLWVPCLK-----EDRIRLFTLSD 157 (330)
T ss_pred cccEeEeCCCCCEEEEeeCC-----CCEEEEEEECC
Confidence 3455555544 466665432 25689999876
No 114
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=80.95 E-value=58 Score=31.85 Aligned_cols=146 Identities=17% Similarity=0.172 Sum_probs=69.3
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCccee
Q 008260 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~ 273 (572)
..+|+.++. .+.+.+||+.+.+....-... ..+ ..++.. ++.+|+.++.+ ..
T Consensus 43 ~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~------------~~~---~~~~~~~~g~~l~~~~~~~------~~ 96 (300)
T TIGR03866 43 KLLYVCASD-----SDTIQVIDLATGEVIGTLPSG------------PDP---ELFALHPNGKILYIANEDD------NL 96 (300)
T ss_pred CEEEEEECC-----CCeEEEEECCCCcEEEeccCC------------CCc---cEEEECCCCCEEEEEcCCC------Ce
Confidence 457777652 245889998887654321111 111 122222 34566665432 26
Q ss_pred EEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceE
Q 008260 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~ 352 (572)
+.+||+.+.+-...- +.....++++.. ++.+++++..+. +.+..||..+.+-......+ .+.. .
T Consensus 97 l~~~d~~~~~~~~~~-----~~~~~~~~~~~~~dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~----~~~~-~ 161 (300)
T TIGR03866 97 VTVIDIETRKVLAEI-----PVGVEPEGMAVSPDGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVD----QRPR-F 161 (300)
T ss_pred EEEEECCCCeEEeEe-----eCCCCcceEEECCCCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcC----CCcc-E
Confidence 889998875422111 111112233333 556666654321 23566787665432211111 1111 2
Q ss_pred EEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcE
Q 008260 353 AAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (572)
Q Consensus 353 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W 386 (572)
.+...++..+++++... ..+..||+++.+.
T Consensus 162 ~~~s~dg~~l~~~~~~~----~~v~i~d~~~~~~ 191 (300)
T TIGR03866 162 AEFTADGKELWVSSEIG----GTVSVIDVATRKV 191 (300)
T ss_pred EEECCCCCEEEEEcCCC----CEEEEEEcCccee
Confidence 23333443444444221 4588999987654
No 115
>PRK02889 tolB translocation protein TolB; Provisional
Probab=80.94 E-value=83 Score=33.61 Aligned_cols=102 Identities=11% Similarity=0.044 Sum_probs=54.3
Q ss_pred eeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCccc
Q 008260 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (572)
Q Consensus 272 ~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~ 349 (572)
..++++|+.+.+=..+.. .+. ...+.... +++|++....++ ..++|.+|+.+...+++... . ..
T Consensus 220 ~~I~~~dl~~g~~~~l~~---~~g--~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~-~~- 285 (427)
T PRK02889 220 PVVYVHDLATGRRRVVAN---FKG--SNSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQS---S-GI- 285 (427)
T ss_pred cEEEEEECCCCCEEEeec---CCC--CccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCC---C-CC-
Confidence 469999998876555541 111 11122222 446655443332 35799999887776666432 1 11
Q ss_pred ceEEEEEcCC-EEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 350 DHAAAVHAER-YLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 350 ~~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
........++ .|+...... + ...+|.+|..+...+.+.
T Consensus 286 ~~~~~wSpDG~~l~f~s~~~-g--~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 286 DTEPFFSPDGRSIYFTSDRG-G--APQIYRMPASGGAAQRVT 324 (427)
T ss_pred CcCeEEcCCCCEEEEEecCC-C--CcEEEEEECCCCceEEEe
Confidence 1122333344 444432211 1 246899998888777764
No 116
>PRK05137 tolB translocation protein TolB; Provisional
Probab=80.62 E-value=85 Score=33.55 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=57.8
Q ss_pred eeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccce
Q 008260 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (572)
Q Consensus 272 ~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~ 351 (572)
..++++|+.+.+...+.. .+.........-.+++|++....++ ..++|++|+.+..-..+... +. ...
T Consensus 226 ~~i~~~dl~~g~~~~l~~---~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~---~~--~~~ 293 (435)
T PRK05137 226 PRVYLLDLETGQRELVGN---FPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDS---PA--IDT 293 (435)
T ss_pred CEEEEEECCCCcEEEeec---CCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCC---CC--ccC
Confidence 589999999988877752 2221111122222446655543322 35799999998887776533 11 111
Q ss_pred EEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 352 AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 352 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
......++.-++|.....+ ...+|++|..+...+.+.
T Consensus 294 ~~~~spDG~~i~f~s~~~g--~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSG--SPQLYVMNADGSNPRRIS 330 (435)
T ss_pred ceeEcCCCCEEEEEECCCC--CCeEEEEECCCCCeEEee
Confidence 2223333333334321111 247999999888777764
No 117
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=80.29 E-value=68 Score=32.66 Aligned_cols=135 Identities=15% Similarity=0.185 Sum_probs=80.9
Q ss_pred CEEEEEccC-CCC---ccc-CcEEEEEcCCC-----cEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccC
Q 008260 196 DKMYIYGGN-HNG---RYL-SDMHILDLRSW-----AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHT 265 (572)
Q Consensus 196 ~~lyv~GG~-~~~---~~~-~~v~~yd~~t~-----~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~ 265 (572)
..++++|.. ..+ ... ..++.|++... +++.+.... .+-.-.+++.++++|.+.-|.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~-------------~~g~V~ai~~~~~~lv~~~g~- 107 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE-------------VKGPVTAICSFNGRLVVAVGN- 107 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE-------------ESS-EEEEEEETTEEEEEETT-
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe-------------ecCcceEhhhhCCEEEEeecC-
Confidence 467777752 111 122 67999999885 666665543 233356677779997766663
Q ss_pred CCCCcceeEEEEECCCCc-eEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCc--eEEEECCCCcEEEeeCCC
Q 008260 266 KDPSEIIQVKVFDLQTCS-WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLND--LHILDLETMTWDEIDAVG 342 (572)
Q Consensus 266 ~~~~~~~~v~~yd~~~~~-W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~--v~~yd~~t~~W~~v~~~g 342 (572)
.+.+|+....+ +..... ...+-...+..+.++.|++ |-. ... ++.|+.+..+-..+...
T Consensus 108 -------~l~v~~l~~~~~l~~~~~---~~~~~~i~sl~~~~~~I~v-gD~------~~sv~~~~~~~~~~~l~~va~d- 169 (321)
T PF03178_consen 108 -------KLYVYDLDNSKTLLKKAF---YDSPFYITSLSVFKNYILV-GDA------MKSVSLLRYDEENNKLILVARD- 169 (321)
T ss_dssp -------EEEEEEEETTSSEEEEEE---E-BSSSEEEEEEETTEEEE-EES------SSSEEEEEEETTTE-EEEEEEE-
T ss_pred -------EEEEEEccCcccchhhhe---ecceEEEEEEeccccEEEE-EEc------ccCEEEEEEEccCCEEEEEEec-
Confidence 67888888877 877764 3333355566677886665 432 233 45667766667777655
Q ss_pred CCCCcccceEEEEE-cCCEEEEEe
Q 008260 343 VPPSPRSDHAAAVH-AERYLLIFG 365 (572)
Q Consensus 343 ~~p~~R~~~~~~~~-~~~~lyv~G 365 (572)
..++...++..+ +++ .++.+
T Consensus 170 --~~~~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 170 --YQPRWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp --SS-BEEEEEEEE-SSS-EEEEE
T ss_pred --CCCccEEEEEEecCCc-EEEEE
Confidence 567776677666 554 44444
No 118
>PRK03629 tolB translocation protein TolB; Provisional
Probab=79.84 E-value=91 Score=33.37 Aligned_cols=105 Identities=11% Similarity=0.107 Sum_probs=56.4
Q ss_pred eeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccce
Q 008260 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (572)
Q Consensus 272 ~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~ 351 (572)
..++++|+.+.+-+.+.. .+..-......-.+.+|++.....+ ..+++++|+++.+.+++... +. ...
T Consensus 223 ~~i~i~dl~~G~~~~l~~---~~~~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~---~~--~~~ 290 (429)
T PRK03629 223 SALVIQTLANGAVRQVAS---FPRHNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDG---RS--NNT 290 (429)
T ss_pred cEEEEEECCCCCeEEccC---CCCCcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCC---CC--CcC
Confidence 478999998877666642 1111111111112446665543322 23599999999888777533 11 112
Q ss_pred EEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 352 AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 352 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
......++..++|.....+ ...+|.+|+.+..-+++.
T Consensus 291 ~~~wSPDG~~I~f~s~~~g--~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 291 EPTWFPDSQNLAYTSDQAG--RPQVYKVNINGGAPQRIT 327 (429)
T ss_pred ceEECCCCCEEEEEeCCCC--CceEEEEECCCCCeEEee
Confidence 2333344434444332111 247999999888777664
No 119
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=79.60 E-value=88 Score=33.07 Aligned_cols=147 Identities=18% Similarity=0.162 Sum_probs=82.8
Q ss_pred cCcEEEEEcCCC-----cEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCc-
Q 008260 210 LSDMHILDLRSW-----AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCS- 283 (572)
Q Consensus 210 ~~~v~~yd~~t~-----~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~- 283 (572)
.+++|.+|.... .|..+... ..-..+.+...++.+|+.-.... ....+..+++....
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~--------------~~~~~~~v~~~~~~~yi~Tn~~a---~~~~l~~~~l~~~~~ 313 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPR--------------EDGVEYYVDHHGDRLYILTNDDA---PNGRLVAVDLADPSP 313 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEES--------------SSS-EEEEEEETTEEEEEE-TT----TT-EEEEEETTSTSG
T ss_pred CCeEEEEeccccCCCcCCcEEEeCC--------------CCceEEEEEccCCEEEEeeCCCC---CCcEEEEeccccccc
Confidence 368999998875 78887652 22233334445899999877433 34577888887654
Q ss_pred --eE-EeccCCCCCCC-CcceEEEEECCEEEEEecCCCCCCCCCceEEEECC-CCcEEEeeCCCCCCCcccceEEEEE--
Q 008260 284 --WS-TLKTYGKPPVS-RGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLE-TMTWDEIDAVGVPPSPRSDHAAAVH-- 356 (572)
Q Consensus 284 --W~-~~~~~g~~p~~-R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~-t~~W~~v~~~g~~p~~R~~~~~~~~-- 356 (572)
|. .+. .+.. ..-..+...+++|++.-=.+. ...+.++|+. +..-..++. |. .+......
T Consensus 314 ~~~~~~l~----~~~~~~~l~~~~~~~~~Lvl~~~~~~----~~~l~v~~~~~~~~~~~~~~----p~--~g~v~~~~~~ 379 (414)
T PF02897_consen 314 AEWWTVLI----PEDEDVSLEDVSLFKDYLVLSYRENG----SSRLRVYDLDDGKESREIPL----PE--AGSVSGVSGD 379 (414)
T ss_dssp GGEEEEEE------SSSEEEEEEEEETTEEEEEEEETT----EEEEEEEETT-TEEEEEEES----SS--SSEEEEEES-
T ss_pred ccceeEEc----CCCCceeEEEEEEECCEEEEEEEECC----ccEEEEEECCCCcEEeeecC----Cc--ceEEeccCCC
Confidence 66 443 1222 234455566888888754332 4569999988 333333321 22 22111111
Q ss_pred -cCC-EEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 357 -AER-YLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 357 -~~~-~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
..+ ..|.+.+... -..+|.||+.+++.+.+.
T Consensus 380 ~~~~~~~~~~ss~~~---P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 380 FDSDELRFSYSSFTT---PPTVYRYDLATGELTLLK 412 (414)
T ss_dssp TT-SEEEEEEEETTE---EEEEEEEETTTTCEEEEE
T ss_pred CCCCEEEEEEeCCCC---CCEEEEEECCCCCEEEEE
Confidence 123 3444444321 247999999999987764
No 120
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=79.12 E-value=68 Score=31.55 Aligned_cols=208 Identities=15% Similarity=0.210 Sum_probs=98.3
Q ss_pred ceEEecccCCCCC--CCCcceeEEEE--CCEEEEEc--cCCCCcccC-c-EEEEEcC-CCcEEEeeecccccCCCCCCCC
Q 008260 171 DQWIAPPISGQRP--KARYEHGAAVV--QDKMYIYG--GNHNGRYLS-D-MHILDLR-SWAWSKIQAKAVAESTESPSPA 241 (572)
Q Consensus 171 ~~W~~~~~~g~~p--~~R~~~s~~~~--~~~lyv~G--G~~~~~~~~-~-v~~yd~~-t~~W~~~~~~~~~~~~~~~~~~ 241 (572)
.+|.........+ ..+.+..+.+. +++|+++- +........ . .+..... ..+|+......... ...
T Consensus 30 ~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~-----~~~ 104 (275)
T PF13088_consen 30 KTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGW-----FGN 104 (275)
T ss_dssp TEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHC-----CCS
T ss_pred CeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCcccccccc-----ccc
Confidence 4898654322233 33444444443 68888886 222211111 1 1244444 46899876543110 000
Q ss_pred CCCCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECC-CCceEEeccCCCCCCCCcceEEEE-E-CCEEEEEecCCCC
Q 008260 242 LLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQ-TCSWSTLKTYGKPPVSRGGQSVTL-V-GTSLVIFGGEDAK 318 (572)
Q Consensus 242 ~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~-~~~W~~~~~~g~~p~~R~~~~~~~-~-~~~iyv~GG~~~~ 318 (572)
...+-.+..+..-++.+++.. ..........+..+... -.+|+...... +.......+.+ . +++|+++--.. .
T Consensus 105 ~~~~~~~~~i~~~~G~l~~~~-~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~ 180 (275)
T PF13088_consen 105 FSGPGRGPPIQLPDGRLIAPY-YHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-G 180 (275)
T ss_dssp CEECSEEEEEEECTTEEEEEE-EEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-S
T ss_pred eeccceeeeeEecCCCEEEEE-eeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-C
Confidence 111122222444478888872 11111223344445544 46799987421 22234444443 2 66888876442 1
Q ss_pred CCCCCceEEEECC-CCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeec
Q 008260 319 RSLLNDLHILDLE-TMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 319 ~~~~~~v~~yd~~-t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
.. .-.+.+..+ -.+|+..... ..|.+......+...++.++++........--.++.-.-...+|..+.
T Consensus 181 ~~--~~~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~ 250 (275)
T PF13088_consen 181 ND--DIYISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPK 250 (275)
T ss_dssp ST--EEEEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEE
T ss_pred CC--cEEEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccE
Confidence 11 223333333 4579987633 235555555555556667777776322222223444444578898763
No 121
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=78.71 E-value=1.6e+02 Score=35.62 Aligned_cols=181 Identities=10% Similarity=0.041 Sum_probs=92.7
Q ss_pred eeEEEE--CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCC--CCCCCCcceeEEEe--CCEEEEEe
Q 008260 189 HGAAVV--QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSP--ALLTPCAGHSLIPW--ENKLLSIA 262 (572)
Q Consensus 189 ~s~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~--~~p~~R~~hs~~~~--~~~iyv~G 262 (572)
+.+++. ++.|||.-..+ +.+.++|+.++.-+.+.............. ....-..-+.++.. ++.|||..
T Consensus 627 ~GIavd~~gn~LYVaDt~n-----~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTEN-----HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCC-----ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 445554 46788875421 357889988877665543211000000000 00000111223332 67888875
Q ss_pred ccCCCCCcceeEEEEECCCCceEEeccCCCC-------C---CCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEEC
Q 008260 263 GHTKDPSEIIQVKVFDLQTCSWSTLKTYGKP-------P---VSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDL 330 (572)
Q Consensus 263 G~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~-------p---~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~ 330 (572)
..+ +.|++||+.+.....+...|.. + .-..-+++++. ++.|||.... .+.|.+||+
T Consensus 702 ~~~------~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~~Irv~D~ 769 (1057)
T PLN02919 702 AGQ------HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------SSSIRALDL 769 (1057)
T ss_pred CCC------CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------CCeEEEEEC
Confidence 432 3689999887766554322110 0 00112233443 3469987653 357999998
Q ss_pred CCCcEEEeeCCCC-CC----------------CcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeecc
Q 008260 331 ETMTWDEIDAVGV-PP----------------SPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQ 391 (572)
Q Consensus 331 ~t~~W~~v~~~g~-~p----------------~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~ 391 (572)
.+.....+..... .+ .-..-.++++..++.|||.-..+ +.|.+||+.+.....+..
T Consensus 770 ~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-----~rIrviD~~tg~v~tiaG 842 (1057)
T PLN02919 770 KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-----HKIKKLDPATKRVTTLAG 842 (1057)
T ss_pred CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-----CEEEEEECCCCeEEEEec
Confidence 8766443321000 00 00011244444556688887543 579999999888776643
No 122
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=78.64 E-value=68 Score=31.27 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=63.6
Q ss_pred eCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCC
Q 008260 254 WENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLET 332 (572)
Q Consensus 254 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t 332 (572)
-.+.|+..||-. .++..|+++.+.++.- ....-+-|+++.- .+.=++.|+.++. +-++|..|
T Consensus 125 ~enSi~~AgGD~-------~~y~~dlE~G~i~r~~----rGHtDYvH~vv~R~~~~qilsG~EDGt------vRvWd~kt 187 (325)
T KOG0649|consen 125 SENSILFAGGDG-------VIYQVDLEDGRIQREY----RGHTDYVHSVVGRNANGQILSGAEDGT------VRVWDTKT 187 (325)
T ss_pred CCCcEEEecCCe-------EEEEEEecCCEEEEEE----cCCcceeeeeeecccCcceeecCCCcc------EEEEeccc
Confidence 468888888742 5788999999887763 2233445555552 2233456666543 66777777
Q ss_pred CcEEEe-eCCCCCCCcc--cce--EEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEee
Q 008260 333 MTWDEI-DAVGVPPSPR--SDH--AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 333 ~~W~~v-~~~g~~p~~R--~~~--~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v 389 (572)
.+=..+ .+-..+..-| .+- .+...+.+ -+|+||. ..+-.+++...+-+.+
T Consensus 188 ~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGgG------p~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 188 QKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGGG------PKLSLWHLRSSESTCV 242 (325)
T ss_pred cceeEEeccccChhhcCcccCceeEEEeccCc-eEEecCC------CceeEEeccCCCceEE
Confidence 664333 2222222222 222 44444455 7777775 3455666666666655
No 123
>KOG3530 consensus FERM domain protein EHM2 [General function prediction only]
Probab=77.02 E-value=2.8 Score=45.29 Aligned_cols=66 Identities=15% Similarity=0.069 Sum_probs=53.7
Q ss_pred ccCCCChhhHHHHhhheeeeeeCCCCCCC--CCC---CCh-------hhhHhHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 008260 36 LTSKFSNDSALLLYALYQQATVGPCNVPK--PSS---WSP-------VEQSKWKSWQGLGNMATTEAMRLFVKILEEE 101 (572)
Q Consensus 36 ~~~~~~~~~~l~lY~l~kQat~G~~~~~~--p~~---~~~-------~~~~k~~aW~~~~~~~~~~a~~~yi~~~~~~ 101 (572)
+.-..+.+...+|=||-=|+-.|||+.++ ++. |.+ .+.+=.+-||+++|++..+|+-.|.+.++-|
T Consensus 118 GRL~Cp~~~AaeLaAl~lQsELGDYn~~~Ht~~yVSefRf~p~Qte~LE~~I~e~hK~~rGqspaqAElnyLnkAkwL 195 (616)
T KOG3530|consen 118 GRLYCPFETAAELAALILQSELGDYNEEEHTGGYVSEFRFLPNQTEELEERIFELHKELRGQSPAQAELNYLNKAKWL 195 (616)
T ss_pred CCCCCchhhHHHHHHHHHHHHhcCCChhhccccceeeeEecccccHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhh
Confidence 45578999999999999999999999763 221 222 3566678999999999999999999998765
No 124
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=76.34 E-value=99 Score=31.91 Aligned_cols=167 Identities=18% Similarity=0.205 Sum_probs=82.9
Q ss_pred cceeEEEE--CCEEEEEccCCCCcccCcEEEEEcCCCc--EEEeeecccccCCCCCCCCCCCCCc--ceeEEEe-CCEEE
Q 008260 187 YEHGAAVV--QDKMYIYGGNHNGRYLSDMHILDLRSWA--WSKIQAKAVAESTESPSPALLTPCA--GHSLIPW-ENKLL 259 (572)
Q Consensus 187 ~~~s~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~p~~R~--~hs~~~~-~~~iy 259 (572)
.-|.+... ++.+|+..= -.+.+++|+..... ........ .++-. .|.+..- +..+|
T Consensus 145 h~H~v~~~pdg~~v~v~dl-----G~D~v~~~~~~~~~~~l~~~~~~~------------~~~G~GPRh~~f~pdg~~~Y 207 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPDL-----GADRVYVYDIDDDTGKLTPVDSIK------------VPPGSGPRHLAFSPDGKYAY 207 (345)
T ss_dssp CEEEEEE-TTSSEEEEEET-----TTTEEEEEEE-TTS-TEEEEEEEE------------CSTTSSEEEEEE-TTSSEEE
T ss_pred cceeEEECCCCCEEEEEec-----CCCEEEEEEEeCCCceEEEeeccc------------cccCCCCcEEEEcCCcCEEE
Confidence 33665555 356777621 13578888887765 65543332 11111 2222222 45788
Q ss_pred EEeccCCCCCcceeEEEEECC--CCceEEeccCCCCCCC---C-cceEEEEE--CCEEEEEecCCCCCCCCCceEEEEC-
Q 008260 260 SIAGHTKDPSEIIQVKVFDLQ--TCSWSTLKTYGKPPVS---R-GGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDL- 330 (572)
Q Consensus 260 v~GG~~~~~~~~~~v~~yd~~--~~~W~~~~~~g~~p~~---R-~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~- 330 (572)
|..-.. +.|.+|+.. +.+++.+.....+|.. . ..+...+. +..||+.-.. .+.|.+|++
T Consensus 208 v~~e~s------~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~------~~sI~vf~~d 275 (345)
T PF10282_consen 208 VVNELS------NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG------SNSISVFDLD 275 (345)
T ss_dssp EEETTT------TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT------TTEEEEEEEC
T ss_pred EecCCC------CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc------CCEEEEEEEe
Confidence 886543 345555544 6666665432223222 2 22233333 5578875432 567888887
Q ss_pred -CCCcEEEeeCCCC-CCCcccceEEEEE-cCCEEEEEeCCCCCcCcCcE--EEEECCCCcEEeec
Q 008260 331 -ETMTWDEIDAVGV-PPSPRSDHAAAVH-AERYLLIFGGGSHAACFNDL--HVLDLQTMEWSRPT 390 (572)
Q Consensus 331 -~t~~W~~v~~~g~-~p~~R~~~~~~~~-~~~~lyv~GG~~~~~~~~~v--~~yd~~t~~W~~v~ 390 (572)
.+.+-+.+..... -..||. +++- .+++|||....+ +.| +..|.++..++.+.
T Consensus 276 ~~~g~l~~~~~~~~~G~~Pr~---~~~s~~g~~l~Va~~~s-----~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 276 PATGTLTLVQTVPTGGKFPRH---FAFSPDGRYLYVANQDS-----NTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TTTTTEEEEEEEEESSSSEEE---EEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEE
T ss_pred cCCCceEEEEEEeCCCCCccE---EEEeCCCCEEEEEecCC-----CeEEEEEEeCCCCcEEEec
Confidence 4455555543300 122333 2332 455666655432 344 45567888888774
No 125
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=76.23 E-value=1.3e+02 Score=33.24 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=63.9
Q ss_pred EEEeCCEEEEEeccCCCCCcceeEEEEECCCC--ceEEeccCCC-C-C---CCCcceEEEEECCEEEEEecCCCCCCCCC
Q 008260 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTC--SWSTLKTYGK-P-P---VSRGGQSVTLVGTSLVIFGGEDAKRSLLN 323 (572)
Q Consensus 251 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~--~W~~~~~~g~-~-p---~~R~~~~~~~~~~~iyv~GG~~~~~~~~~ 323 (572)
-++.++.||+.... ..|+.+|..+. .|+.-..... . + ......+.++.+++||+. .. -.
T Consensus 65 Pvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~-t~------dg 130 (527)
T TIGR03075 65 PLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFG-TL------DA 130 (527)
T ss_pred CEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEE-cC------CC
Confidence 34568999986442 25889998875 4876432100 0 0 001122345667888763 22 24
Q ss_pred ceEEEECCCCc--EEEeeCCCCCCCc-ccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc--EEee
Q 008260 324 DLHILDLETMT--WDEIDAVGVPPSP-RSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME--WSRP 389 (572)
Q Consensus 324 ~v~~yd~~t~~--W~~v~~~g~~p~~-R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~v 389 (572)
.++.+|..|.+ |+.-... .... ....+-++. ++.||+-...........|+.||.++.+ |+.-
T Consensus 131 ~l~ALDa~TGk~~W~~~~~~--~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNGD--YKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred EEEEEECCCCCEEeeccccc--ccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 58999988764 7654311 1111 111223344 5545553222222233568999998764 7643
No 126
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=76.06 E-value=1.9e+02 Score=35.04 Aligned_cols=169 Identities=12% Similarity=0.052 Sum_probs=86.8
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~ 272 (572)
++.|||... ..+.+++||+.+.....+..................-..-+.++.. ++.|||.-..+ +
T Consensus 694 ~g~LyVad~-----~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n------~ 762 (1057)
T PLN02919 694 NEKVYIAMA-----GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES------S 762 (1057)
T ss_pred CCeEEEEEC-----CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC------C
Confidence 467777643 1245888888777655443211000000000000000111223322 45699886543 4
Q ss_pred eEEEEECCCCceEEeccCCC-C--------------CCCCc--ceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCc
Q 008260 273 QVKVFDLQTCSWSTLKTYGK-P--------------PVSRG--GQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMT 334 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~-~--------------p~~R~--~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 334 (572)
.|.+||+.+.....+...+. . ...+. -.++++. ++.|||.-.. .+.|.+||+.+..
T Consensus 763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~------N~rIrviD~~tg~ 836 (1057)
T PLN02919 763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY------NHKIKKLDPATKR 836 (1057)
T ss_pred eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC------CCEEEEEECCCCe
Confidence 79999988766433221000 0 00011 1233333 5678887643 4569999999888
Q ss_pred EEEeeCCCCC-------CCc--ccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 335 WDEIDAVGVP-------PSP--RSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 335 W~~v~~~g~~-------p~~--R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
...+...|.. ... ..-+++++..++.|||.-..+ +.|.++|+.+.+
T Consensus 837 v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N-----n~Irvid~~~~~ 891 (1057)
T PLN02919 837 VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN-----SLIRYLDLNKGE 891 (1057)
T ss_pred EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC-----CEEEEEECCCCc
Confidence 8776544311 001 122344555566799986544 568899988765
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=75.67 E-value=62 Score=34.29 Aligned_cols=144 Identities=13% Similarity=0.146 Sum_probs=71.0
Q ss_pred eeEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcce--eEEE--eCCEEEEEecc
Q 008260 189 HGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGH--SLIP--WENKLLSIAGH 264 (572)
Q Consensus 189 ~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~h--s~~~--~~~~iyv~GG~ 264 (572)
++.+..+.-.|++||- ...++|++.+.++.--.+- .+.+. ++.. .|+..++-||.
T Consensus 85 ~al~s~n~G~~l~ag~----i~g~lYlWelssG~LL~v~-----------------~aHYQ~ITcL~fs~dgs~iiTgsk 143 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGT----ISGNLYLWELSSGILLNVL-----------------SAHYQSITCLKFSDDGSHIITGSK 143 (476)
T ss_pred eeeecCCCceEEEeec----ccCcEEEEEeccccHHHHH-----------------HhhccceeEEEEeCCCcEEEecCC
Confidence 6666667777888872 2346888877775432211 11111 2222 27788888888
Q ss_pred CCCCCcceeEEEEECCCCceEEeccCC-CCCCCC---cceEEEEECCEEEEEecCCCCC---CCCCceEEEECCCCcEEE
Q 008260 265 TKDPSEIIQVKVFDLQTCSWSTLKTYG-KPPVSR---GGQSVTLVGTSLVIFGGEDAKR---SLLNDLHILDLETMTWDE 337 (572)
Q Consensus 265 ~~~~~~~~~v~~yd~~~~~W~~~~~~g-~~p~~R---~~~~~~~~~~~iyv~GG~~~~~---~~~~~v~~yd~~t~~W~~ 337 (572)
++. |.+|++..-- +... ..|.|+ ..|+..+. +--.=+||.+..- ..-+.+-+||+....-
T Consensus 144 Dg~------V~vW~l~~lv----~a~~~~~~~p~~~f~~HtlsIT-Dl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L-- 210 (476)
T KOG0646|consen 144 DGA------VLVWLLTDLV----SADNDHSVKPLHIFSDHTLSIT-DLQIGSGGTNARLYTASEDRTIKLWDLSLGVL-- 210 (476)
T ss_pred Ccc------EEEEEEEeec----ccccCCCccceeeeccCcceeE-EEEecCCCccceEEEecCCceEEEEEecccee--
Confidence 764 5554432100 0000 012222 34444432 2222234432211 0124577778776632
Q ss_pred eeCCCCCCCcccceEEEEEcCCEEEEEeCCCC
Q 008260 338 IDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH 369 (572)
Q Consensus 338 v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~ 369 (572)
+... -.|+.-+++++-..++.+.+|+..+
T Consensus 211 Llti---~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 211 LLTI---TFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred eEEE---ecCCcceeEEEcccccEEEecCCcc
Confidence 2222 4566667777765555666677553
No 128
>PTZ00421 coronin; Provisional
Probab=75.61 E-value=1.3e+02 Score=32.94 Aligned_cols=108 Identities=11% Similarity=0.096 Sum_probs=55.2
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceE-----EeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEE
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWS-----TLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHI 327 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~-----~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~ 327 (572)
++.+++.|+.+. .|.+||..+.... .+... ......-.++... ++.+++.||.+ ..+.+
T Consensus 87 d~~~LaSgS~Dg------tIkIWdi~~~~~~~~~~~~l~~L--~gH~~~V~~l~f~P~~~~iLaSgs~D------gtVrI 152 (493)
T PTZ00421 87 DPQKLFTASEDG------TIMGWGIPEEGLTQNISDPIVHL--QGHTKKVGIVSFHPSAMNVLASAGAD------MVVNV 152 (493)
T ss_pred CCCEEEEEeCCC------EEEEEecCCCccccccCcceEEe--cCCCCcEEEEEeCcCCCCEEEEEeCC------CEEEE
Confidence 456777777654 4777887654221 11100 0011111122222 24577777754 34788
Q ss_pred EECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 328 LDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 328 yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
+|+.+.+-...-.. ....-.++....++.+++.|+.+ ..+.+||+.+.+
T Consensus 153 WDl~tg~~~~~l~~----h~~~V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~ 201 (493)
T PTZ00421 153 WDVERGKAVEVIKC----HSDQITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGT 201 (493)
T ss_pred EECCCCeEEEEEcC----CCCceEEEEEECCCCEEEEecCC-----CEEEEEECCCCc
Confidence 89887643221110 11112233344455688888765 468899998765
No 129
>PLN00181 protein SPA1-RELATED; Provisional
Probab=75.00 E-value=1.7e+02 Score=34.06 Aligned_cols=99 Identities=18% Similarity=0.223 Sum_probs=51.0
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCce-EEeccCCCCCCCCcceEEEEE---CCEEEEEecCCCCCCCCCceEEEEC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSW-STLKTYGKPPVSRGGQSVTLV---GTSLVIFGGEDAKRSLLNDLHILDL 330 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~g~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~ 330 (572)
++.+++.||.+. .|.+||+.+..- ..+.. . ....++.+ ++.++++|+.+ +.+.+||+
T Consensus 587 ~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~~~~----~---~~v~~v~~~~~~g~~latgs~d------g~I~iwD~ 647 (793)
T PLN00181 587 DPTLLASGSDDG------SVKLWSINQGVSIGTIKT----K---ANICCVQFPSESGRSLAFGSAD------HKVYYYDL 647 (793)
T ss_pred CCCEEEEEcCCC------EEEEEECCCCcEEEEEec----C---CCeEEEEEeCCCCCEEEEEeCC------CeEEEEEC
Confidence 467778887654 488888876432 22221 1 11122222 46777888754 35889998
Q ss_pred CCCc--EEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCC
Q 008260 331 ETMT--WDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQT 383 (572)
Q Consensus 331 ~t~~--W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t 383 (572)
.+.. ...+... . ..-...... ++..++.|+.+ +.+.++|+..
T Consensus 648 ~~~~~~~~~~~~h----~-~~V~~v~f~-~~~~lvs~s~D-----~~ikiWd~~~ 691 (793)
T PLN00181 648 RNPKLPLCTMIGH----S-KTVSYVRFV-DSSTLVSSSTD-----NTLKLWDLSM 691 (793)
T ss_pred CCCCccceEecCC----C-CCEEEEEEe-CCCEEEEEECC-----CEEEEEeCCC
Confidence 7543 2222111 1 111122223 33466777654 3577777754
No 130
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=74.54 E-value=1e+02 Score=31.10 Aligned_cols=130 Identities=16% Similarity=0.177 Sum_probs=71.3
Q ss_pred eCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEE-ECCEEEEEecCCCCCCCCCceEEEECCC
Q 008260 254 WENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKRSLLNDLHILDLET 332 (572)
Q Consensus 254 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~t 332 (572)
.+..=.+.||.+. .|..||+.+..=..+-+-+ .+.. +... .....+|.||++. .+..+|+.+
T Consensus 63 ~d~~~~~~G~~dg------~vr~~Dln~~~~~~igth~---~~i~--ci~~~~~~~~vIsgsWD~------~ik~wD~R~ 125 (323)
T KOG1036|consen 63 ADESTIVTGGLDG------QVRRYDLNTGNEDQIGTHD---EGIR--CIEYSYEVGCVISGSWDK------TIKFWDPRN 125 (323)
T ss_pred cCCceEEEeccCc------eEEEEEecCCcceeeccCC---CceE--EEEeeccCCeEEEcccCc------cEEEEeccc
Confidence 3556667787765 4899999998877665321 1111 1111 2345667888754 377778765
Q ss_pred CcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe-e-cc--------CCCCCCCcccc
Q 008260 333 MTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR-P-TQ--------QGEIPTPRAGH 402 (572)
Q Consensus 333 ~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~-v-~~--------~g~~p~~R~~~ 402 (572)
.. .. +....+..-+++.+. ++ .+|+|+.+ ..+..||+.+..--. . +. ..-.| .+.|+
T Consensus 126 ~~---~~--~~~d~~kkVy~~~v~-g~-~LvVg~~~-----r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy 192 (323)
T KOG1036|consen 126 KV---VV--GTFDQGKKVYCMDVS-GN-RLVVGTSD-----RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGY 192 (323)
T ss_pred cc---cc--cccccCceEEEEecc-CC-EEEEeecC-----ceEEEEEcccccchhhhccccceeEEEEEEEec-CCCce
Confidence 11 11 112233344455544 44 67777754 568888876543111 0 00 00123 56777
Q ss_pred EEEEECCcccc
Q 008260 403 AGVTIGENWFL 413 (572)
Q Consensus 403 ~~~~~~~~~~i 413 (572)
++..++++.++
T Consensus 193 ~~sSieGRVav 203 (323)
T KOG1036|consen 193 VVSSIEGRVAV 203 (323)
T ss_pred EEEeecceEEE
Confidence 77777776555
No 131
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=72.78 E-value=1.2e+02 Score=31.26 Aligned_cols=203 Identities=14% Similarity=0.133 Sum_probs=96.8
Q ss_pred CCEEEEEccCCCCcccCcEEEEE--cCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe---CCEEEEEeccCCCCC
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILD--LRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW---ENKLLSIAGHTKDPS 269 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd--~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~---~~~iyv~GG~~~~~~ 269 (572)
++.||+..... .....+..|. ..+.+.+.+.... ......+.+.+ +..||+. -+..
T Consensus 48 ~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~~-------------~~g~~p~~i~~~~~g~~l~va-ny~~--- 108 (345)
T PF10282_consen 48 GRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSVP-------------SGGSSPCHIAVDPDGRFLYVA-NYGG--- 108 (345)
T ss_dssp SSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEEE-------------ESSSCEEEEEECTTSSEEEEE-ETTT---
T ss_pred CCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeeec-------------cCCCCcEEEEEecCCCEEEEE-EccC---
Confidence 57889886532 1223455554 4446787776543 11222222233 3455554 2222
Q ss_pred cceeEEEEECCCC-ceEEec----c--CCC---CCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCc--E
Q 008260 270 EIIQVKVFDLQTC-SWSTLK----T--YGK---PPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMT--W 335 (572)
Q Consensus 270 ~~~~v~~yd~~~~-~W~~~~----~--~g~---~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W 335 (572)
..+.+|++..+ .-.... . .++ ....-..|.+... ++.+|+..= -.+.|++|+.+... .
T Consensus 109 --g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl------G~D~v~~~~~~~~~~~l 180 (345)
T PF10282_consen 109 --GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL------GADRVYVYDIDDDTGKL 180 (345)
T ss_dssp --TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET------TTTEEEEEEE-TTS-TE
T ss_pred --CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec------CCCEEEEEEEeCCCceE
Confidence 25777777653 221110 0 011 1223344565555 456777631 14679999887765 5
Q ss_pred EEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECC--CCcEEeeccCCCCCC---Cc-cccEEEEECC
Q 008260 336 DEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQ--TMEWSRPTQQGEIPT---PR-AGHAGVTIGE 409 (572)
Q Consensus 336 ~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~v~~~g~~p~---~R-~~~~~~~~~~ 409 (572)
+.......++-.--.|.+..-+++++||..-.+ +.|.+|+.. +..++.+.....+|. .. ..+..+...+
T Consensus 181 ~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd 255 (345)
T PF10282_consen 181 TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS-----NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD 255 (345)
T ss_dssp EEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT
T ss_pred EEeeccccccCCCCcEEEEcCCcCEEEEecCCC-----CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC
Confidence 553322111111112233333456899987643 555555554 667776643322322 22 2233333333
Q ss_pred ccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCC
Q 008260 410 NWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPS 448 (572)
Q Consensus 410 ~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~ 448 (572)
...||+--. -.+.|.+|++.
T Consensus 256 ---------------g~~lyvsnr----~~~sI~vf~~d 275 (345)
T PF10282_consen 256 ---------------GRFLYVSNR----GSNSISVFDLD 275 (345)
T ss_dssp ---------------SSEEEEEEC----TTTEEEEEEEC
T ss_pred ---------------CCEEEEEec----cCCEEEEEEEe
Confidence 346777432 24678888873
No 132
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=72.49 E-value=1.4e+02 Score=31.76 Aligned_cols=161 Identities=11% Similarity=0.128 Sum_probs=76.3
Q ss_pred ceEEecccCCCC-CCCC-cceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcc
Q 008260 171 DQWIAPPISGQR-PKAR-YEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAG 248 (572)
Q Consensus 171 ~~W~~~~~~g~~-p~~R-~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~ 248 (572)
.+|+.....+.. +..+ ...++...++..|++|-. + -+++=.-.-.+|+.+.... ..|.. .
T Consensus 120 ~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~--G----~il~T~DgG~tW~~~~~~~----------~~p~~--~ 181 (398)
T PLN00033 120 KTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP--A----ILLHTSDGGETWERIPLSP----------KLPGE--P 181 (398)
T ss_pred CCceECccCcccccccccceeeeEEECCEEEEEcCc--e----EEEEEcCCCCCceECcccc----------CCCCC--c
Confidence 389875432111 1111 234455567888888641 1 2333333457899876421 01112 2
Q ss_pred eeEEEe-CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCC-CCCCCCc--------------ceEEEEE-CCEEEE
Q 008260 249 HSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYG-KPPVSRG--------------GQSVTLV-GTSLVI 311 (572)
Q Consensus 249 hs~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g-~~p~~R~--------------~~~~~~~-~~~iyv 311 (572)
+..... ++.++++|... .+++-+-.-.+|+.+.... ..+..+. ...+... ++.+++
T Consensus 182 ~~i~~~~~~~~~ivg~~G-------~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~ 254 (398)
T PLN00033 182 VLIKATGPKSAEMVTDEG-------AIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVA 254 (398)
T ss_pred eEEEEECCCceEEEeccc-------eEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEE
Confidence 333344 45677777321 3555555567899873110 1111111 1111211 334444
Q ss_pred EecCCCCCCCCCceEEE-ECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCC
Q 008260 312 FGGEDAKRSLLNDLHIL-DLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGG 367 (572)
Q Consensus 312 ~GG~~~~~~~~~~v~~y-d~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~ 367 (572)
+|-. ..+++- |.....|+.+.. +.++...++....++.++++|..
T Consensus 255 vg~~-------G~~~~s~d~G~~~W~~~~~----~~~~~l~~v~~~~dg~l~l~g~~ 300 (398)
T PLN00033 255 VSSR-------GNFYLTWEPGQPYWQPHNR----ASARRIQNMGWRADGGLWLLTRG 300 (398)
T ss_pred EECC-------ccEEEecCCCCcceEEecC----CCccceeeeeEcCCCCEEEEeCC
Confidence 4422 223333 322334898864 34555555555566678888753
No 133
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=72.15 E-value=1.4e+02 Score=31.60 Aligned_cols=165 Identities=17% Similarity=0.082 Sum_probs=84.4
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCccee-EEEe-CCEEEEEeccCCCCC---
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHS-LIPW-ENKLLSIAGHTKDPS--- 269 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs-~~~~-~~~iyv~GG~~~~~~--- 269 (572)
+++.++++=..++.-...++++|+.+++...-. ....... ++.. +++.+++...+....
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~----------------i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG----------------IENPKFSSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE----------------EEEEESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc----------------ccccccceEEEeCCCCEEEEEEeCccccccc
Confidence 455555553333344457999999998544321 1122222 3433 445555555544322
Q ss_pred --cceeEEEEECCCCceE--EeccCCCCCCCCc-ceEEEEE-CC-EEEEEecCCCCCCCCCceEEEECCCC-----cEEE
Q 008260 270 --EIIQVKVFDLQTCSWS--TLKTYGKPPVSRG-GQSVTLV-GT-SLVIFGGEDAKRSLLNDLHILDLETM-----TWDE 337 (572)
Q Consensus 270 --~~~~v~~yd~~~~~W~--~~~~~g~~p~~R~-~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~t~-----~W~~ 337 (572)
....|+.+...+..-+ .+- ..+.... ...+... ++ .|+|.-..... .++++.+|.... .|..
T Consensus 198 ~~~~~~v~~~~~gt~~~~d~lvf---e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~---~s~v~~~d~~~~~~~~~~~~~ 271 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTPQSEDELVF---EEPDEPFWFVSVSRSKDGRYLFISSSSGTS---ESEVYLLDLDDGGSPDAKPKL 271 (414)
T ss_dssp CGCCEEEEEEETTS-GGG-EEEE---C-TTCTTSEEEEEE-TTSSEEEEEEESSSS---EEEEEEEECCCTTTSS-SEEE
T ss_pred CCCCcEEEEEECCCChHhCeeEE---eecCCCcEEEEEEecCcccEEEEEEEcccc---CCeEEEEeccccCCCcCCcEE
Confidence 2678999988877654 222 1122222 2223222 33 34333222111 378999999875 8988
Q ss_pred eeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc---EEe
Q 008260 338 IDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME---WSR 388 (572)
Q Consensus 338 v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~---W~~ 388 (572)
+... ..-..+.+... ++.+||.-. .+.....|..+++.... |..
T Consensus 272 l~~~----~~~~~~~v~~~-~~~~yi~Tn--~~a~~~~l~~~~l~~~~~~~~~~ 318 (414)
T PF02897_consen 272 LSPR----EDGVEYYVDHH-GDRLYILTN--DDAPNGRLVAVDLADPSPAEWWT 318 (414)
T ss_dssp EEES----SSS-EEEEEEE-TTEEEEEE---TT-TT-EEEEEETTSTSGGGEEE
T ss_pred EeCC----CCceEEEEEcc-CCEEEEeeC--CCCCCcEEEEeccccccccccee
Confidence 8642 22222223333 556888765 33334678899988765 664
No 134
>PLN00181 protein SPA1-RELATED; Provisional
Probab=69.74 E-value=1.8e+02 Score=33.98 Aligned_cols=103 Identities=14% Similarity=0.091 Sum_probs=53.6
Q ss_pred CEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEE-cCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 307 TSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 307 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
+.+++.|+.+ ..+.+||..+.+-...-. .....-.++... .++.+++.||.+ ..+.+||+.+..
T Consensus 545 ~~~las~~~D------g~v~lWd~~~~~~~~~~~----~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iWd~~~~~ 609 (793)
T PLN00181 545 KSQVASSNFE------GVVQVWDVARSQLVTEMK----EHEKRVWSIDYSSADPTLLASGSDD-----GSVKLWSINQGV 609 (793)
T ss_pred CCEEEEEeCC------CeEEEEECCCCeEEEEec----CCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEEEECCCCc
Confidence 4556666653 348888887654322211 111222233333 244588888865 458888887654
Q ss_pred EE-eeccCCCCCCCccccEEEEE-CCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCC
Q 008260 386 WS-RPTQQGEIPTPRAGHAGVTI-GENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 386 W~-~v~~~g~~p~~R~~~~~~~~-~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
-. .+.. .....++.+ .. .+.++++|+.++ .|.+||+.+.
T Consensus 610 ~~~~~~~-------~~~v~~v~~~~~---------------~g~~latgs~dg----~I~iwD~~~~ 650 (793)
T PLN00181 610 SIGTIKT-------KANICCVQFPSE---------------SGRSLAFGSADH----KVYYYDLRNP 650 (793)
T ss_pred EEEEEec-------CCCeEEEEEeCC---------------CCCEEEEEeCCC----eEEEEECCCC
Confidence 22 2211 111122222 11 226788888765 4888998654
No 135
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=69.62 E-value=1.9e+02 Score=32.26 Aligned_cols=87 Identities=17% Similarity=0.253 Sum_probs=55.1
Q ss_pred CCCCCCcceEEEEE---CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCC-CCcccceEEEEEcCCEEEEEeCC
Q 008260 292 KPPVSRGGQSVTLV---GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVP-PSPRSDHAAAVHAERYLLIFGGG 367 (572)
Q Consensus 292 ~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~-p~~R~~~~~~~~~~~~lyv~GG~ 367 (572)
.+|..+...+...+ ++++++.- . ...+++.++.++-+..++....+. ..+-..+-++.-.+++|-+.++.
T Consensus 423 ~~~~~~~~a~~i~ftid~~k~~~~s----~--~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~ 496 (691)
T KOG2048|consen 423 DVPLALLDASAISFTIDKNKLFLVS----K--NIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR 496 (691)
T ss_pred cchhhhccceeeEEEecCceEEEEe----c--ccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc
Confidence 56777655554443 67777765 1 234688888888887777654211 22233333333356788888864
Q ss_pred CCCcCcCcEEEEECCCCcEEeec
Q 008260 368 SHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 368 ~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
..+++|++++.+-..+.
T Consensus 497 ------g~I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 497 ------GQIFVYNLETLESHLLK 513 (691)
T ss_pred ------ceEEEEEcccceeecch
Confidence 67999999998877664
No 136
>PRK01742 tolB translocation protein TolB; Provisional
Probab=68.75 E-value=1.7e+02 Score=31.26 Aligned_cols=138 Identities=13% Similarity=0.111 Sum_probs=69.4
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEec-cCCCCCcceeEEEEECCCCceEEecc
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAG-HTKDPSEIIQVKVFDLQTCSWSTLKT 289 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG-~~~~~~~~~~v~~yd~~~~~W~~~~~ 289 (572)
..++.+|+.+..-+.+.... .........-+++.++++. .++ ..++|.+|+.+....++..
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~--------------g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~lt~ 289 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFR--------------GHNGAPAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQLTS 289 (429)
T ss_pred cEEEEEeCCCCceEEEecCC--------------CccCceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEeecc
Confidence 46899999887665554321 1111111122454444433 222 2368899998887776642
Q ss_pred CCCCCCCCcceEEEEE-CC-EEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEE-cCCEEEEEeC
Q 008260 290 YGKPPVSRGGQSVTLV-GT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVH-AERYLLIFGG 366 (572)
Q Consensus 290 ~g~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~-~~~~lyv~GG 366 (572)
. .. ........ ++ .|++....++ ...+|.+|..+..-+.+.. .. . ..... +++.|++.++
T Consensus 290 ~---~~--~~~~~~wSpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~-----~~-~--~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 290 G---AG--NNTEPSWSPDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG-----RG-Y--SAQISADGKTLVMING 352 (429)
T ss_pred C---CC--CcCCEEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEecC-----CC-C--CccCCCCCCEEEEEcC
Confidence 1 11 11122222 33 4555433222 2357777776654443321 11 1 22233 3344444433
Q ss_pred CCCCcCcCcEEEEECCCCcEEeec
Q 008260 367 GSHAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 367 ~~~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
+.++.+|+.+..+..+.
T Consensus 353 -------~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 353 -------DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred -------CCEEEEECCCCCeEEec
Confidence 45888999998887664
No 137
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=68.35 E-value=1.4e+02 Score=31.27 Aligned_cols=167 Identities=17% Similarity=0.211 Sum_probs=83.1
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEE-eCCEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~~~~iyv~GG~~~~~~~~~~ 273 (572)
+.++|+.+. . ..+-++|+.+.+-. .... .....+.++. -+++..+.+.+... +
T Consensus 48 gr~~yv~~r--d----g~vsviD~~~~~~v--~~i~-------------~G~~~~~i~~s~DG~~~~v~n~~~~-----~ 101 (369)
T PF02239_consen 48 GRYLYVANR--D----GTVSVIDLATGKVV--ATIK-------------VGGNPRGIAVSPDGKYVYVANYEPG-----T 101 (369)
T ss_dssp SSEEEEEET--T----SEEEEEETTSSSEE--EEEE--------------SSEEEEEEE--TTTEEEEEEEETT-----E
T ss_pred CCEEEEEcC--C----CeEEEEECCcccEE--EEEe-------------cCCCcceEEEcCCCCEEEEEecCCC-----c
Confidence 467999853 1 36899999998732 2221 3333344443 35665555555443 7
Q ss_pred EEEEECCCCceE-EeccCC---CCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCccc
Q 008260 274 VKVFDLQTCSWS-TLKTYG---KPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (572)
Q Consensus 274 v~~yd~~~~~W~-~~~~~g---~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~ 349 (572)
+.++|..+.+=. .++..+ ..+.+|...-.....+..||+--.+ ...+|+.|.....=-.+... ...+.
T Consensus 102 v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-----~~~I~vVdy~d~~~~~~~~i---~~g~~ 173 (369)
T PF02239_consen 102 VSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD-----TGEIWVVDYSDPKNLKVTTI---KVGRF 173 (369)
T ss_dssp EEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-----TTEEEEEETTTSSCEEEEEE---E--TT
T ss_pred eeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc-----CCeEEEEEeccccccceeee---ccccc
Confidence 889998886543 333221 1123343222222344555553322 35688888665432222211 45577
Q ss_pred ceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCc
Q 008260 350 DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPR 399 (572)
Q Consensus 350 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R 399 (572)
-|-.....+++.|+.+-.. .+.+-+.|.+++.-..+-..|..|.+.
T Consensus 174 ~~D~~~dpdgry~~va~~~----sn~i~viD~~~~k~v~~i~~g~~p~~~ 219 (369)
T PF02239_consen 174 PHDGGFDPDGRYFLVAANG----SNKIAVIDTKTGKLVALIDTGKKPHPG 219 (369)
T ss_dssp EEEEEE-TTSSEEEEEEGG----GTEEEEEETTTTEEEEEEE-SSSBEET
T ss_pred ccccccCcccceeeecccc----cceeEEEeeccceEEEEeecccccccc
Confidence 7777776665444444222 257889999888665442223344433
No 138
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=68.18 E-value=1.3e+02 Score=29.96 Aligned_cols=187 Identities=10% Similarity=-0.008 Sum_probs=100.7
Q ss_pred cEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccC
Q 008260 212 DMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTY 290 (572)
Q Consensus 212 ~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~ 290 (572)
.+-.+|+.+.+-...+- +..-.-|.++.- ++..++.-+. .-|-++|+++..-++.+..
T Consensus 84 aiGhLdP~tGev~~ypL--------------g~Ga~Phgiv~gpdg~~Witd~~-------~aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 84 AIGHLDPATGEVETYPL--------------GSGASPHGIVVGPDGSAWITDTG-------LAIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred cceecCCCCCceEEEec--------------CCCCCCceEEECCCCCeeEecCc-------ceeEEecCcccceEEeecc
Confidence 46678999888777653 233344554443 5566665322 2688899999888888633
Q ss_pred CCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCC
Q 008260 291 GKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS 368 (572)
Q Consensus 291 g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~ 368 (572)
.+++.. +.-..++ .+.|+..|-..-.+ ++|+.++.-+..+ .|..-.-+.+|+..++.+|+.-=..
T Consensus 143 ~~~a~~--nlet~vfD~~G~lWFt~q~G~yG-------rLdPa~~~i~vfp----aPqG~gpyGi~atpdGsvwyaslag 209 (353)
T COG4257 143 LEHADA--NLETAVFDPWGNLWFTGQIGAYG-------RLDPARNVISVFP----APQGGGPYGICATPDGSVWYASLAG 209 (353)
T ss_pred cccCCC--cccceeeCCCccEEEeeccccce-------ecCcccCceeeec----cCCCCCCcceEECCCCcEEEEeccc
Confidence 222222 2223333 45777665321111 3444444433222 1333444566776677788762211
Q ss_pred CCcCcCcEEEEECCCCcEEeeccCCCCCCCcc-ccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeC
Q 008260 369 HAACFNDLHVLDLQTMEWSRPTQQGEIPTPRA-GHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKP 447 (572)
Q Consensus 369 ~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~-~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~ 447 (572)
+-|-+.|+.+..=+.++ .|.+.. +..-+-.+. .+++.+- ..-.-.+++|||
T Consensus 210 -----naiaridp~~~~aev~p----~P~~~~~gsRriwsdp---------------ig~~wit----twg~g~l~rfdP 261 (353)
T COG4257 210 -----NAIARIDPFAGHAEVVP----QPNALKAGSRRIWSDP---------------IGRAWIT----TWGTGSLHRFDP 261 (353)
T ss_pred -----cceEEcccccCCcceec----CCCcccccccccccCc---------------cCcEEEe----ccCCceeeEeCc
Confidence 55778888877555553 233211 111111111 2245553 111246899999
Q ss_pred CCCcccccccCCC
Q 008260 448 SHKSTLSSKMIET 460 (572)
Q Consensus 448 ~~~~~~~~~~~~~ 460 (572)
+...|...+++..
T Consensus 262 s~~sW~eypLPgs 274 (353)
T COG4257 262 SVTSWIEYPLPGS 274 (353)
T ss_pred ccccceeeeCCCC
Confidence 9999999888743
No 139
>PTZ00420 coronin; Provisional
Probab=66.81 E-value=2.2e+02 Score=31.84 Aligned_cols=61 Identities=20% Similarity=0.215 Sum_probs=35.3
Q ss_pred EEEEEecCCCCCCCCCceEEEECCCCcE-EEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCc
Q 008260 308 SLVIFGGEDAKRSLLNDLHILDLETMTW-DEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (572)
Q Consensus 308 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W-~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 385 (572)
.+++.||.+ ..+.++|+.+.+= ..+. .+..-.++....++.+++.++.+ ..+.+||+.+.+
T Consensus 139 ~iLaSgS~D------gtIrIWDl~tg~~~~~i~------~~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~ 200 (568)
T PTZ00420 139 YIMCSSGFD------SFVNIWDIENEKRAFQIN------MPKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQE 200 (568)
T ss_pred eEEEEEeCC------CeEEEEECCCCcEEEEEe------cCCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCc
Confidence 455667754 3478889877641 1121 11222344444456677777643 468999998764
No 140
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=66.67 E-value=1.5e+02 Score=30.07 Aligned_cols=218 Identities=14% Similarity=0.174 Sum_probs=93.4
Q ss_pred ceEEecccCCCCCCC-Cc-ceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcc
Q 008260 171 DQWIAPPISGQRPKA-RY-EHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAG 248 (572)
Q Consensus 171 ~~W~~~~~~g~~p~~-R~-~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~ 248 (572)
.+|+..... .+.+ .+ ..++...++..||+|-. .-+++-.-.-.+|++++... +.|-..
T Consensus 47 ~tW~~~~~~--~~~~~~~~l~~I~f~~~~g~ivG~~------g~ll~T~DgG~tW~~v~l~~------------~lpgs~ 106 (302)
T PF14870_consen 47 KTWQPVSLD--LDNPFDYHLNSISFDGNEGWIVGEP------GLLLHTTDGGKTWERVPLSS------------KLPGSP 106 (302)
T ss_dssp SS-EE-------S-----EEEEEEEETTEEEEEEET------TEEEEESSTTSS-EE----T------------T-SS-E
T ss_pred ccccccccC--CCccceeeEEEEEecCCceEEEcCC------ceEEEecCCCCCcEEeecCC------------CCCCCe
Confidence 389987642 2222 22 23444557889998741 12333333567899986321 233333
Q ss_pred eeEEEe-CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceE
Q 008260 249 HSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLH 326 (572)
Q Consensus 249 hs~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 326 (572)
+.+..+ ++.++++|.. ..|++=.-.-.+|+.+... ..-.-...... ++++++++-. + +-+.
T Consensus 107 ~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~----~~gs~~~~~r~~dG~~vavs~~-G-----~~~~ 169 (302)
T PF14870_consen 107 FGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSE----TSGSINDITRSSDGRYVAVSSR-G-----NFYS 169 (302)
T ss_dssp EEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETT-S-----SEEE
T ss_pred eEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccC----CcceeEeEEECCCCcEEEEECc-c-----cEEE
Confidence 444444 5677777543 2355544456789998632 11112222333 4565555532 1 1134
Q ss_pred EEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEE--CCCCcEEeeccCCCCCCCccccEE
Q 008260 327 ILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLD--LQTMEWSRPTQQGEIPTPRAGHAG 404 (572)
Q Consensus 327 ~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd--~~t~~W~~v~~~g~~p~~R~~~~~ 404 (572)
..|+....|+.... +..|.-.++....++.|++.. .. ..+..-+ ....+|.+... +.....++.--
T Consensus 170 s~~~G~~~w~~~~r----~~~~riq~~gf~~~~~lw~~~-~G-----g~~~~s~~~~~~~~w~~~~~--~~~~~~~~~ld 237 (302)
T PF14870_consen 170 SWDPGQTTWQPHNR----NSSRRIQSMGFSPDGNLWMLA-RG-----GQIQFSDDPDDGETWSEPII--PIKTNGYGILD 237 (302)
T ss_dssp EE-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TT-----TEEEEEE-TTEEEEE---B---TTSS--S-EEE
T ss_pred EecCCCccceEEcc----CccceehhceecCCCCEEEEe-CC-----cEEEEccCCCCccccccccC--CcccCceeeEE
Confidence 56788888998864 356666677777777787765 22 1233333 34557877421 12233333333
Q ss_pred EEECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCCccccccc
Q 008260 405 VTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKSTLSSKM 457 (572)
Q Consensus 405 ~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~~~~~~~~ 457 (572)
+.... .+.+++.||.. .+++=.-.-+.|.....
T Consensus 238 ~a~~~---------------~~~~wa~gg~G-----~l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 238 LAYRP---------------PNEIWAVGGSG-----TLLVSTDGGKTWQKDRV 270 (302)
T ss_dssp EEESS---------------SS-EEEEESTT------EEEESSTTSS-EE-GG
T ss_pred EEecC---------------CCCEEEEeCCc-----cEEEeCCCCccceECcc
Confidence 33332 44899999843 23333333446766543
No 141
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=66.08 E-value=2e+02 Score=31.28 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=20.9
Q ss_pred eeEEEECCEEEEEccCCCC----cccCcEEEEEcCCC--cEEEe
Q 008260 189 HGAAVVQDKMYIYGGNHNG----RYLSDMHILDLRSW--AWSKI 226 (572)
Q Consensus 189 ~s~~~~~~~lyv~GG~~~~----~~~~~v~~yd~~t~--~W~~~ 226 (572)
.+.++.++.+|+ |..... .....++.||..+. .|+.-
T Consensus 150 ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 150 GAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred CCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEee
Confidence 344555666664 432111 22457999999875 48653
No 142
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=62.28 E-value=79 Score=32.35 Aligned_cols=87 Identities=14% Similarity=0.242 Sum_probs=51.3
Q ss_pred ceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeecc-CCCCCCCcccc
Q 008260 324 DLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQ-QGEIPTPRAGH 402 (572)
Q Consensus 324 ~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~-~g~~p~~R~~~ 402 (572)
.+-++++.|....+.- .--+.+-++..+.+ +++|-|-.+ +.+-.+|.+....-++-. ..++ -
T Consensus 341 TikvW~~st~efvRtl-----~gHkRGIAClQYr~-rlvVSGSSD-----ntIRlwdi~~G~cLRvLeGHEeL------v 403 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTL-----NGHKRGIACLQYRD-RLVVSGSSD-----NTIRLWDIECGACLRVLEGHEEL------V 403 (499)
T ss_pred eEEEEeccceeeehhh-----hcccccceehhccC-eEEEecCCC-----ceEEEEeccccHHHHHHhchHHh------h
Confidence 4667777777665442 33455566666765 477777654 678888888766544311 1111 1
Q ss_pred EEEEECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCC
Q 008260 403 AGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPS 448 (572)
Q Consensus 403 ~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~ 448 (572)
.++..++ +=+|-|||+|. +-++|+.
T Consensus 404 RciRFd~-----------------krIVSGaYDGk----ikvWdl~ 428 (499)
T KOG0281|consen 404 RCIRFDN-----------------KRIVSGAYDGK----IKVWDLQ 428 (499)
T ss_pred hheeecC-----------------ceeeeccccce----EEEEecc
Confidence 2344444 56788999987 5555543
No 143
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=60.05 E-value=1.2e+02 Score=30.90 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=60.2
Q ss_pred eeEEEECCEEEEEccCCCCcccCcEEEEEcCCCc-EEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCC
Q 008260 189 HGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWA-WSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKD 267 (572)
Q Consensus 189 ~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~ 267 (572)
.+++.++++|.+.-| +.+++|++...+ +.+.+... .+-.-.++.+.++.|++- -...
T Consensus 92 ~ai~~~~~~lv~~~g-------~~l~v~~l~~~~~l~~~~~~~-------------~~~~i~sl~~~~~~I~vg-D~~~- 149 (321)
T PF03178_consen 92 TAICSFNGRLVVAVG-------NKLYVYDLDNSKTLLKKAFYD-------------SPFYITSLSVFKNYILVG-DAMK- 149 (321)
T ss_dssp EEEEEETTEEEEEET-------TEEEEEEEETTSSEEEEEEE--------------BSSSEEEEEEETTEEEEE-ESSS-
T ss_pred eEhhhhCCEEEEeec-------CEEEEEEccCcccchhhheec-------------ceEEEEEEeccccEEEEE-Eccc-
Confidence 677777899777666 578899988888 88888764 344556666678866644 3221
Q ss_pred CCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEE
Q 008260 268 PSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVI 311 (572)
Q Consensus 268 ~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv 311 (572)
.-.+..|+....+-..++. -..++...++..+ ++..++
T Consensus 150 ---sv~~~~~~~~~~~l~~va~---d~~~~~v~~~~~l~d~~~~i 188 (321)
T PF03178_consen 150 ---SVSLLRYDEENNKLILVAR---DYQPRWVTAAEFLVDEDTII 188 (321)
T ss_dssp ---SEEEEEEETTTE-EEEEEE---ESS-BEEEEEEEE-SSSEEE
T ss_pred ---CEEEEEEEccCCEEEEEEe---cCCCccEEEEEEecCCcEEE
Confidence 2345667887777777763 3456666666666 554333
No 144
>PTZ00421 coronin; Provisional
Probab=57.62 E-value=2.9e+02 Score=30.24 Aligned_cols=63 Identities=22% Similarity=0.192 Sum_probs=35.6
Q ss_pred CEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCc
Q 008260 256 NKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMT 334 (572)
Q Consensus 256 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~ 334 (572)
+.+++.||.+. .|.+||+.+.+-...-. ... ..-.++... ++.+++.|+.++ .+.+||+.+.+
T Consensus 138 ~~iLaSgs~Dg------tVrIWDl~tg~~~~~l~--~h~--~~V~sla~spdG~lLatgs~Dg------~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGADM------VVNVWDVERGKAVEVIK--CHS--DQITSLEWNLDGSLLCTTSKDK------KLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCCC------EEEEEECCCCeEEEEEc--CCC--CceEEEEEECCCCEEEEecCCC------EEEEEECCCCc
Confidence 45777777654 58889988764322110 011 111222222 567777777643 48889988765
No 145
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=55.61 E-value=2.1e+02 Score=28.04 Aligned_cols=205 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred eEEecccCCCCCCCCcceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeE
Q 008260 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSL 251 (572)
Q Consensus 172 ~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~ 251 (572)
.|.+-+ +|. ++++|++.+........-.-.=|.....|...-.. |.+-.+-.-
T Consensus 21 sWmrDp----l~~----------~~r~~~~~~~~~~~l~E~~~~~~~~~~~~~~~~~l-------------p~~~~gTg~ 73 (249)
T KOG3545|consen 21 AWMRDP----LPA----------DDRIYVMNYFDGLMLTEYTNLEDFKRGRKAEKYRL-------------PYSWDGTGH 73 (249)
T ss_pred eeecCC----Ccc----------cCceEEeccccCceEEEeccHHHhhccCcceEEeC-------------CCCccccce
Q ss_pred EEeCCEEEEEeccCCCCCcceeEEEEECCC---CceEEeccCCCCCC------CCcceEEEEECCEEEEEecCCCCCCCC
Q 008260 252 IPWENKLLSIAGHTKDPSEIIQVKVFDLQT---CSWSTLKTYGKPPV------SRGGQSVTLVGTSLVIFGGEDAKRSLL 322 (572)
Q Consensus 252 ~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~---~~W~~~~~~g~~p~------~R~~~~~~~~~~~iyv~GG~~~~~~~~ 322 (572)
+++++.+|.-.+.... +-.||+.+ ..|..++..+.... +-...-.++..+-|+++=-..+... .
T Consensus 74 VVynGs~yynk~~t~~------ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g-~ 146 (249)
T KOG3545|consen 74 VVYNGSLYYNKAGTRN------IIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAG-T 146 (249)
T ss_pred EEEcceEEeeccCCcc------eEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCC-c
Q ss_pred CceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcE-EEEECCCCcEEeeccCCCCCCCccc
Q 008260 323 NDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDL-HVLDLQTMEWSRPTQQGEIPTPRAG 401 (572)
Q Consensus 323 ~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v-~~yd~~t~~W~~v~~~g~~p~~R~~ 401 (572)
-.+-.+|+.+-.-+..-.. ..++...+.+.+--+.||++-...... ..| +.||..+++-..++.. .+.+-..
T Consensus 147 iv~skLdp~tl~~e~tW~T---~~~k~~~~~aF~iCGvLY~v~S~~~~~--~~i~yaydt~~~~~~~~~ip--f~N~y~~ 219 (249)
T KOG3545|consen 147 IVLSKLDPETLEVERTWNT---TLPKRSAGNAFMICGVLYVVHSYNCTH--TQISYAYDTTTGTQERIDLP--FPNPYSY 219 (249)
T ss_pred EEeeccCHHHhheeeeecc---ccCCCCcCceEEEeeeeEEEeccccCC--ceEEEEEEcCCCceeccccc--ccchhhh
Q ss_pred cEEEEECCccccceeeeeeccCCCCEEEEE
Q 008260 402 HAGVTIGENWFLGLSLVVSSYSGEDVIVAF 431 (572)
Q Consensus 402 ~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~ 431 (572)
++++-.+-. +.+||++
T Consensus 220 ~~~idYNP~--------------D~~LY~w 235 (249)
T KOG3545|consen 220 ATMIDYNPR--------------DRRLYAW 235 (249)
T ss_pred hhccCCCcc--------------cceeeEe
No 146
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=53.43 E-value=3e+02 Score=29.19 Aligned_cols=121 Identities=12% Similarity=0.184 Sum_probs=58.7
Q ss_pred cceeEEEe-CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCc
Q 008260 247 AGHSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLND 324 (572)
Q Consensus 247 ~~hs~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~ 324 (572)
..++++.. ++.||..|-.++ .+.+||+.+.. .++ ..|.--.--.+..+ +|--|+.-+.+.. .
T Consensus 349 ~~ts~~fHpDgLifgtgt~d~------~vkiwdlks~~--~~a---~Fpght~~vk~i~FsENGY~Lat~add~-----~ 412 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPDG------VVKIWDLKSQT--NVA---KFPGHTGPVKAISFSENGYWLATAADDG-----S 412 (506)
T ss_pred eeEEeeEcCCceEEeccCCCc------eEEEEEcCCcc--ccc---cCCCCCCceeEEEeccCceEEEEEecCC-----e
Confidence 34444444 566666654443 57888888766 332 12221111122222 3334444333222 2
Q ss_pred eEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeecc
Q 008260 325 LHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQ 391 (572)
Q Consensus 325 v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~ 391 (572)
|.++|+...+ .+... ..+....-.+...-..+..++.+|.+ -.||.|+-.+.+|+.+..
T Consensus 413 V~lwDLRKl~--n~kt~-~l~~~~~v~s~~fD~SGt~L~~~g~~-----l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 413 VKLWDLRKLK--NFKTI-QLDEKKEVNSLSFDQSGTYLGIAGSD-----LQVYICKKKTKSWTEIKE 471 (506)
T ss_pred EEEEEehhhc--cccee-eccccccceeEEEcCCCCeEEeecce-----eEEEEEecccccceeeeh
Confidence 7888887654 12111 01111111222232335566777632 346777788999999854
No 147
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=53.28 E-value=4.2e+02 Score=30.80 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=23.3
Q ss_pred ceeEEEECCEEEEEccCCCCcccCcEEEEEcCCC--cEEEee
Q 008260 188 EHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQ 227 (572)
Q Consensus 188 ~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~ 227 (572)
..+-+++++.||+... .+.++.+|..+. .|+.-.
T Consensus 187 e~TPlvvgg~lYv~t~------~~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 187 QATPLKVGDTLYLCTP------HNKVIALDAATGKEKWKFDP 222 (764)
T ss_pred ccCCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcC
Confidence 3556678999999855 246888888764 476543
No 148
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=50.27 E-value=2.8e+02 Score=27.84 Aligned_cols=186 Identities=11% Similarity=0.022 Sum_probs=97.6
Q ss_pred cEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe--CCEEEEEeccCCCCCcceeEEEEECCCCceEEecc
Q 008260 212 DMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (572)
Q Consensus 212 ~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 289 (572)
-+-++|+++..-+..+-.. -.+-.+.-..++ .+.|+..|-....+ ++||.++.-+..+
T Consensus 125 aI~R~dpkt~evt~f~lp~------------~~a~~nlet~vfD~~G~lWFt~q~G~yG-------rLdPa~~~i~vfp- 184 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPL------------EHADANLETAVFDPWGNLWFTGQIGAYG-------RLDPARNVISVFP- 184 (353)
T ss_pred eeEEecCcccceEEeeccc------------ccCCCcccceeeCCCccEEEeeccccce-------ecCcccCceeeec-
Confidence 6889999887766654321 111122222333 46788776432221 5666666655553
Q ss_pred CCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEE--cCCEEEEEeC
Q 008260 290 YGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVH--AERYLLIFGG 366 (572)
Q Consensus 290 ~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~--~~~~lyv~GG 366 (572)
.|..-.-+++|+- ++.+|+.-= +-|-+-..|+.+..=+.++. |.+....+--+. .-+++++.-
T Consensus 185 ---aPqG~gpyGi~atpdGsvwyasl------agnaiaridp~~~~aev~p~----P~~~~~gsRriwsdpig~~witt- 250 (353)
T COG4257 185 ---APQGGGPYGICATPDGSVWYASL------AGNAIARIDPFAGHAEVVPQ----PNALKAGSRRIWSDPIGRAWITT- 250 (353)
T ss_pred ---cCCCCCCcceEECCCCcEEEEec------cccceEEcccccCCcceecC----CCcccccccccccCccCcEEEec-
Confidence 2333333344443 677776522 13456777777765444432 333211111111 123466641
Q ss_pred CCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEe
Q 008260 367 GSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLK 446 (572)
Q Consensus 367 ~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd 446 (572)
.-...+++||+.+..|.+.+. |......-...+++ .+++++- .-..+.+.+||
T Consensus 251 ----wg~g~l~rfdPs~~sW~eypL----Pgs~arpys~rVD~---------------~grVW~s----ea~agai~rfd 303 (353)
T COG4257 251 ----WGTGSLHRFDPSVTSWIEYPL----PGSKARPYSMRVDR---------------HGRVWLS----EADAGAIGRFD 303 (353)
T ss_pred ----cCCceeeEeCcccccceeeeC----CCCCCCcceeeecc---------------CCcEEee----ccccCceeecC
Confidence 112469999999999998763 33222222334443 3355552 11246788999
Q ss_pred CCCCcccccccC
Q 008260 447 PSHKSTLSSKMI 458 (572)
Q Consensus 447 ~~~~~~~~~~~~ 458 (572)
+++.+.....++
T Consensus 304 peta~ftv~p~p 315 (353)
T COG4257 304 PETARFTVLPIP 315 (353)
T ss_pred cccceEEEecCC
Confidence 998877665433
No 149
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=48.31 E-value=3.7e+02 Score=28.96 Aligned_cols=106 Identities=21% Similarity=0.350 Sum_probs=60.5
Q ss_pred CCEEEEEecCCCCCCCCCceEEEECCCC-c-EEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCC
Q 008260 306 GTSLVIFGGEDAKRSLLNDLHILDLETM-T-WDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQT 383 (572)
Q Consensus 306 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~-~-W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t 383 (572)
+++ |+..|..+. .+.++|.... . =..+.. ..-.-++++....+.+++.|+.+ ..+.++|+++
T Consensus 214 d~~-~l~s~s~D~-----tiriwd~~~~~~~~~~l~g-----H~~~v~~~~f~p~g~~i~Sgs~D-----~tvriWd~~~ 277 (456)
T KOG0266|consen 214 DGS-YLLSGSDDK-----TLRIWDLKDDGRNLKTLKG-----HSTYVTSVAFSPDGNLLVSGSDD-----GTVRIWDVRT 277 (456)
T ss_pred CCc-EEEEecCCc-----eEEEeeccCCCeEEEEecC-----CCCceEEEEecCCCCEEEEecCC-----CcEEEEeccC
Confidence 344 555554333 3788888433 2 222322 22222455555555699999876 5688999988
Q ss_pred CcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCCc
Q 008260 384 MEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKS 451 (572)
Q Consensus 384 ~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~~ 451 (572)
.+-.+. +..-...-+++..+. ++.+++.+.+++. +.+||..+..
T Consensus 278 ~~~~~~-----l~~hs~~is~~~f~~---------------d~~~l~s~s~d~~----i~vwd~~~~~ 321 (456)
T KOG0266|consen 278 GECVRK-----LKGHSDGISGLAFSP---------------DGNLLVSASYDGT----IRVWDLETGS 321 (456)
T ss_pred CeEEEe-----eeccCCceEEEEECC---------------CCCEEEEcCCCcc----EEEEECCCCc
Confidence 655543 222222233333333 4478888877654 7889987765
No 150
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=47.88 E-value=3.5e+02 Score=28.36 Aligned_cols=100 Identities=13% Similarity=0.104 Sum_probs=54.8
Q ss_pred CCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccC--CCCCCCC
Q 008260 220 SWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTY--GKPPVSR 297 (572)
Q Consensus 220 t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~--g~~p~~R 297 (572)
.+.|+.+..+ .-..--++.++|++|++.- ...++.++... +-.++.+. +.+...+
T Consensus 189 ~~~Wt~l~~~---------------~~~~~DIi~~kGkfYAvD~-------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~ 245 (373)
T PLN03215 189 GNVLKALKQM---------------GYHFSDIIVHKGQTYALDS-------IGIVYWINSDL-EFSRFGTSLDENITDGC 245 (373)
T ss_pred CCeeeEccCC---------------CceeeEEEEECCEEEEEcC-------CCeEEEEecCC-ceeeecceecccccCCc
Confidence 3899998632 2224457778999999921 23566666431 11222110 0111111
Q ss_pred --cceEEEEECCEEEEEecCCCCCC---------C--CC--ceEEEECCCCcEEEeeCCC
Q 008260 298 --GGQSVTLVGTSLVIFGGEDAKRS---------L--LN--DLHILDLETMTWDEIDAVG 342 (572)
Q Consensus 298 --~~~~~~~~~~~iyv~GG~~~~~~---------~--~~--~v~~yd~~t~~W~~v~~~g 342 (572)
.....+...++|+++..+..... + .. .|+..|.+..+|.++..+|
T Consensus 246 ~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 246 WTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred ccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 12334556788999887522110 0 12 4566688889999998763
No 151
>PRK04043 tolB translocation protein TolB; Provisional
Probab=47.75 E-value=3.8e+02 Score=28.62 Aligned_cols=150 Identities=11% Similarity=0.063 Sum_probs=82.5
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccC
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTY 290 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~ 290 (572)
.++|.+|+.+..++++.... ..-........+.+||+.-... ...+++++|+.+.+.+++...
T Consensus 257 ~~Iy~~dl~~g~~~~LT~~~-------------~~d~~p~~SPDG~~I~F~Sdr~----g~~~Iy~~dl~~g~~~rlt~~ 319 (419)
T PRK04043 257 PDIYLYDTNTKTLTQITNYP-------------GIDVNGNFVEDDKRIVFVSDRL----GYPNIFMKKLNSGSVEQVVFH 319 (419)
T ss_pred cEEEEEECCCCcEEEcccCC-------------CccCccEECCCCCEEEEEECCC----CCceEEEEECCCCCeEeCccC
Confidence 58999999999888875432 1001111122245677665432 235899999999988887643
Q ss_pred CCCCCCCcceEEEEECCEEEEEecCCCCC--CCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCC
Q 008260 291 GKPPVSRGGQSVTLVGTSLVIFGGEDAKR--SLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS 368 (572)
Q Consensus 291 g~~p~~R~~~~~~~~~~~iyv~GG~~~~~--~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~ 368 (572)
+. ........++.|.+........ .-..+++++|+++..++.+...+ ... ......|+..++|-...
T Consensus 320 g~-----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-----~~~-~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 320 GK-----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG-----VNQ-FPRFSSDGGSIMFIKYL 388 (419)
T ss_pred CC-----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC-----CcC-CeEECCCCCEEEEEEcc
Confidence 21 1222222345555554332211 01357999999999998886431 122 22233344344443222
Q ss_pred CCcCcCcEEEEECCCCcEEeec
Q 008260 369 HAACFNDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 369 ~~~~~~~v~~yd~~t~~W~~v~ 390 (572)
+ -...++.+++..+.=..++
T Consensus 389 ~--~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 389 G--NQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred C--CcEEEEEEecCCCeeEEee
Confidence 1 2256888888776544443
No 152
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=47.24 E-value=3.2e+02 Score=27.74 Aligned_cols=189 Identities=11% Similarity=0.068 Sum_probs=86.2
Q ss_pred cceEEecccCCCCCCCCcceeEEEEC-CEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCC--C
Q 008260 170 YDQWIAPPISGQRPKARYEHGAAVVQ-DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTP--C 246 (572)
Q Consensus 170 ~~~W~~~~~~g~~p~~R~~~s~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~--R 246 (572)
.+.|+.+. .|....-..+..++ ++-|++|-. ..+++=+---.+|..+.... ..+ .
T Consensus 5 ~~~W~~v~----l~t~~~l~dV~F~d~~~G~~VG~~------g~il~T~DGG~tW~~~~~~~------------~~~~~~ 62 (302)
T PF14870_consen 5 GNSWQQVS----LPTDKPLLDVAFVDPNHGWAVGAY------GTILKTTDGGKTWQPVSLDL------------DNPFDY 62 (302)
T ss_dssp S--EEEEE-----S-SS-EEEEEESSSS-EEEEETT------TEEEEESSTTSS-EE-----------------S-----
T ss_pred CCCcEEee----cCCCCceEEEEEecCCEEEEEecC------CEEEEECCCCccccccccCC------------Ccccee
Confidence 46899887 34444445555554 778998752 12333222346899876432 122 2
Q ss_pred cceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCce
Q 008260 247 AGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDL 325 (572)
Q Consensus 247 ~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v 325 (572)
...++...++..|++|-.. -+..-.-.-.+|++++.. .+.+-..+....+ .+.++++|.. ..+
T Consensus 63 ~l~~I~f~~~~g~ivG~~g-------~ll~T~DgG~tW~~v~l~--~~lpgs~~~i~~l~~~~~~l~~~~-------G~i 126 (302)
T PF14870_consen 63 HLNSISFDGNEGWIVGEPG-------LLLHTTDGGKTWERVPLS--SKLPGSPFGITALGDGSAELAGDR-------GAI 126 (302)
T ss_dssp EEEEEEEETTEEEEEEETT-------EEEEESSTTSS-EE------TT-SS-EEEEEEEETTEEEEEETT---------E
T ss_pred eEEEEEecCCceEEEcCCc-------eEEEecCCCCCcEEeecC--CCCCCCeeEEEEcCCCcEEEEcCC-------CcE
Confidence 2233444578888886421 233333346789998642 2223333344433 6677777642 335
Q ss_pred EEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEE
Q 008260 326 HILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGV 405 (572)
Q Consensus 326 ~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~ 405 (572)
++=.=.-.+|+.+... .......+....++.+++++-.. +-+...|+-...|+... .+..|.-.++.
T Consensus 127 y~T~DgG~tW~~~~~~----~~gs~~~~~r~~dG~~vavs~~G-----~~~~s~~~G~~~w~~~~----r~~~~riq~~g 193 (302)
T PF14870_consen 127 YRTTDGGKTWQAVVSE----TSGSINDITRSSDGRYVAVSSRG-----NFYSSWDPGQTTWQPHN----RNSSRRIQSMG 193 (302)
T ss_dssp EEESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETTS-----SEEEEE-TT-SS-EEEE------SSS-EEEEE
T ss_pred EEeCCCCCCeeEcccC----CcceeEeEEECCCCcEEEEECcc-----cEEEEecCCCccceEEc----cCccceehhce
Confidence 5544456799998643 22333444555677666666432 22335678888899886 44556656666
Q ss_pred EECC
Q 008260 406 TIGE 409 (572)
Q Consensus 406 ~~~~ 409 (572)
...+
T Consensus 194 f~~~ 197 (302)
T PF14870_consen 194 FSPD 197 (302)
T ss_dssp E-TT
T ss_pred ecCC
Confidence 6554
No 153
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=46.96 E-value=3.9e+02 Score=28.61 Aligned_cols=149 Identities=13% Similarity=0.072 Sum_probs=78.9
Q ss_pred CcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccC
Q 008260 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTY 290 (572)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~ 290 (572)
..++.+|+.+..=..+..... .-..++.. -+++-++|-.... ...+++.+|+.+.+-.++..
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g-------------~~~~P~fs-pDG~~l~f~~~rd---g~~~iy~~dl~~~~~~~Lt~- 279 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNG-------------NNGAPAFS-PDGSKLAFSSSRD---GSPDIYLMDLDGKNLPRLTN- 279 (425)
T ss_pred ceEEEEeccCCccceeeccCC-------------ccCCccCC-CCCCEEEEEECCC---CCccEEEEcCCCCcceeccc-
Confidence 568888888777666554321 11111111 2333333333222 34589999999887444431
Q ss_pred CCCCCCCcceE-EEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCC
Q 008260 291 GKPPVSRGGQS-VTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH 369 (572)
Q Consensus 291 g~~p~~R~~~~-~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~ 369 (572)
..++..+. ..-.+.+|+..-...+ ...++++|++...=+++...+ ....+-...-++++|.+.+ ...
T Consensus 280 ---~~gi~~~Ps~spdG~~ivf~Sdr~G----~p~I~~~~~~g~~~~riT~~~----~~~~~p~~SpdG~~i~~~~-~~~ 347 (425)
T COG0823 280 ---GFGINTSPSWSPDGSKIVFTSDRGG----RPQIYLYDLEGSQVTRLTFSG----GGNSNPVWSPDGDKIVFES-SSG 347 (425)
T ss_pred ---CCccccCccCCCCCCEEEEEeCCCC----CcceEEECCCCCceeEeeccC----CCCcCccCCCCCCEEEEEe-ccC
Confidence 12222222 2333556665532222 237999999988877776441 1111222222344455544 332
Q ss_pred CcCcCcEEEEECCCCc-EEeecc
Q 008260 370 AACFNDLHVLDLQTME-WSRPTQ 391 (572)
Q Consensus 370 ~~~~~~v~~yd~~t~~-W~~v~~ 391 (572)
+. .++..+|+.+.. |+.+..
T Consensus 348 g~--~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 348 GQ--WDIDKNDLASGGKIRILTS 368 (425)
T ss_pred Cc--eeeEEeccCCCCcEEEccc
Confidence 22 678899988777 888754
No 154
>PRK01742 tolB translocation protein TolB; Provisional
Probab=46.60 E-value=3.9e+02 Score=28.44 Aligned_cols=100 Identities=10% Similarity=0.038 Sum_probs=50.4
Q ss_pred eeEEEEECCCCceEEeccCCCCCCCCcceEEEEE-CC-EEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCccc
Q 008260 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (572)
Q Consensus 272 ~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~ 349 (572)
..++++|+.+.+-+.+.. .+. ........ ++ +|++....++. -++|.+|+.+.....+... . ..
T Consensus 228 ~~i~i~dl~tg~~~~l~~---~~g--~~~~~~wSPDG~~La~~~~~~g~----~~Iy~~d~~~~~~~~lt~~---~--~~ 293 (429)
T PRK01742 228 SQLVVHDLRSGARKVVAS---FRG--HNGAPAFSPDGSRLAFASSKDGV----LNIYVMGANGGTPSQLTSG---A--GN 293 (429)
T ss_pred cEEEEEeCCCCceEEEec---CCC--ccCceeECCCCCEEEEEEecCCc----EEEEEEECCCCCeEeeccC---C--CC
Confidence 468999998877666642 111 11122222 34 45544332222 3589999988877766432 1 11
Q ss_pred ceEEEEEcCCE-EEEEeCCCCCcCcCcEEEEECCCCcEEe
Q 008260 350 DHAAAVHAERY-LLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 350 ~~~~~~~~~~~-lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
........++. |+.....++ ...+|.+|..+..-+.
T Consensus 294 ~~~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~ 330 (429)
T PRK01742 294 NTEPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASL 330 (429)
T ss_pred cCCEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEE
Confidence 22233334443 444332221 1468888876654333
No 155
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=46.26 E-value=4.1e+02 Score=28.64 Aligned_cols=209 Identities=9% Similarity=0.107 Sum_probs=0.0
Q ss_pred ccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEE-eccCCCCCcceeEEEEECCCCceEEe
Q 008260 209 YLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSI-AGHTKDPSEIIQVKVFDLQTCSWSTL 287 (572)
Q Consensus 209 ~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~-GG~~~~~~~~~~v~~yd~~~~~W~~~ 287 (572)
+.+++|.|++.+.+=.++.. .......+-..-+++-.+| -=+..+.....++++++.+..+-.++
T Consensus 57 ~~DdlWe~slk~g~~~ritS--------------~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi 122 (668)
T COG4946 57 CCDDLWEYSLKDGKPLRITS--------------GLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI 122 (668)
T ss_pred echHHHHhhhccCCeeEEec--------------ccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE
Q ss_pred ccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEe
Q 008260 288 KTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFG 365 (572)
Q Consensus 288 ~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~G 365 (572)
.--| |....++-+ ++.|+|.--.-..-.....++..+.+..... |....-.+..+..++ +.++|
T Consensus 123 TyfG-----r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e--------~LnlGpathiv~~dg-~ivig 188 (668)
T COG4946 123 TYFG-----RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE--------PLNLGPATHIVIKDG-IIVIG 188 (668)
T ss_pred EEec-----cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee--------eccCCceeeEEEeCC-EEEEc
Q ss_pred CCC---------CCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCcccc-----------------------
Q 008260 366 GGS---------HAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFL----------------------- 413 (572)
Q Consensus 366 G~~---------~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~i----------------------- 413 (572)
-.. .+.....+|.=....++.+++ +-.+-.-.+-+.+++++|+
T Consensus 189 RntydLP~WK~YkGGtrGklWis~d~g~tFeK~-----vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrH 263 (668)
T COG4946 189 RNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKF-----VDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRH 263 (668)
T ss_pred cCcccCcccccccCCccceEEEEecCCcceeee-----eecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhc
Q ss_pred ----ceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCCCccccccc
Q 008260 414 ----GLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKSTLSSKM 457 (572)
Q Consensus 414 ----G~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~~~~~~~~~ 457 (572)
-.-.-..+-+|+..+|-.|| |+|.|||+++.-....+
T Consensus 264 TnFtdYY~R~~nsDGkrIvFq~~G-------dIylydP~td~lekldI 304 (668)
T COG4946 264 TNFTDYYPRNANSDGKRIVFQNAG-------DIYLYDPETDSLEKLDI 304 (668)
T ss_pred CCchhccccccCCCCcEEEEecCC-------cEEEeCCCcCcceeeec
No 156
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=44.13 E-value=3.6e+02 Score=27.32 Aligned_cols=130 Identities=14% Similarity=0.121 Sum_probs=71.4
Q ss_pred eEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceE
Q 008260 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (572)
Q Consensus 273 ~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~ 352 (572)
++..||...+.-...- ...---..++..+..=.++||.++ .+-+||+.+..=..+-... .+-. +
T Consensus 36 slrlYdv~~~~l~~~~-----~~~~plL~c~F~d~~~~~~G~~dg------~vr~~Dln~~~~~~igth~---~~i~--c 99 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLKF-----KHGAPLLDCAFADESTIVTGGLDG------QVRRYDLNTGNEDQIGTHD---EGIR--C 99 (323)
T ss_pred cEEEEeccchhhhhhe-----ecCCceeeeeccCCceEEEeccCc------eEEEEEecCCcceeeccCC---CceE--E
Confidence 4778888777322221 111112344555555566787644 4889999988877775441 1111 1
Q ss_pred EEE-EcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEE
Q 008260 353 AAV-HAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAF 431 (572)
Q Consensus 353 ~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~ 431 (572)
... ...+ .+|.||++ ..+..+|+....-. +..-.+-.=+++-+.++ .+|+
T Consensus 100 i~~~~~~~-~vIsgsWD-----~~ik~wD~R~~~~~-----~~~d~~kkVy~~~v~g~------------------~LvV 150 (323)
T KOG1036|consen 100 IEYSYEVG-CVISGSWD-----KTIKFWDPRNKVVV-----GTFDQGKKVYCMDVSGN------------------RLVV 150 (323)
T ss_pred EEeeccCC-eEEEcccC-----ccEEEEeccccccc-----cccccCceEEEEeccCC------------------EEEE
Confidence 111 2244 78889987 56888888762211 11222222234444443 5666
Q ss_pred cCCCCCccCcEEEEeCCCCc
Q 008260 432 GGYNGRYNNEVHVLKPSHKS 451 (572)
Q Consensus 432 GG~~~~~~~dv~~yd~~~~~ 451 (572)
|+.+ ..|..||+.+..
T Consensus 151 g~~~----r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 151 GTSD----RKVLIYDLRNLD 166 (323)
T ss_pred eecC----ceEEEEEccccc
Confidence 7654 458899987763
No 157
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=42.65 E-value=4.3e+02 Score=27.84 Aligned_cols=183 Identities=14% Similarity=0.155 Sum_probs=81.9
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEe-ccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIA-GHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~G-G~~~~~~~~~~ 273 (572)
+++-++|+|...+ ...+|.+|+.+.+-.++.... .....+-.++.-++.+|.+- + ..
T Consensus 46 dG~kllF~s~~dg--~~nly~lDL~t~~i~QLTdg~------------g~~~~g~~~s~~~~~~~Yv~~~--------~~ 103 (386)
T PF14583_consen 46 DGRKLLFASDFDG--NRNLYLLDLATGEITQLTDGP------------GDNTFGGFLSPDDRALYYVKNG--------RS 103 (386)
T ss_dssp TS-EEEEEE-TTS--S-EEEEEETTT-EEEE---SS-------------B-TTT-EE-TTSSEEEEEETT--------TE
T ss_pred CCCEEEEEeccCC--CcceEEEEcccCEEEECccCC------------CCCccceEEecCCCeEEEEECC--------Ce
Confidence 4555666664332 247899999999999987643 12233433333456665553 3 26
Q ss_pred EEEEECCCCceEEeccCCCCCCCCcceEEEEEC-CEEEEEecC----CC-------------CCCCCCceEEEECCCCcE
Q 008260 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVG-TSLVIFGGE----DA-------------KRSLLNDLHILDLETMTW 335 (572)
Q Consensus 274 v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~-~~iyv~GG~----~~-------------~~~~~~~v~~yd~~t~~W 335 (572)
++..|+.+.+=+.+- ..|..-.+....+.+ +.-.++|=. +. .......+...|+.+.+.
T Consensus 104 l~~vdL~T~e~~~vy---~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~ 180 (386)
T PF14583_consen 104 LRRVDLDTLEERVVY---EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER 180 (386)
T ss_dssp EEEEETTT--EEEEE---E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E
T ss_pred EEEEECCcCcEEEEE---ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce
Confidence 888999888766664 234333333333332 221122211 00 001235688889999888
Q ss_pred EEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCc-CcEEEEECCCCcEEeeccCCCCCCCccccEEEEEC
Q 008260 336 DEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACF-NDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIG 408 (572)
Q Consensus 336 ~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~-~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~ 408 (572)
+.+-.. ..-.+|--..-.+..+++|--...-... ..||..|........+... .+....+|--..-+
T Consensus 181 ~~v~~~----~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~--~~~e~~gHEfw~~D 248 (386)
T PF14583_consen 181 KVVFED----TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR--MEGESVGHEFWVPD 248 (386)
T ss_dssp EEEEEE----SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TT
T ss_pred eEEEec----CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC--CCCcccccccccCC
Confidence 777543 2223444443334446665221111222 3799999887776666432 33444455444333
No 158
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=42.44 E-value=1.9e+02 Score=27.11 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=44.1
Q ss_pred CCCCCCCCCceEEEECCCCcEEEeeCCCC--CCCcccceEEEEEcCCEEEEEeCCCCCcCc--CcEEEEECCCCcEEeec
Q 008260 315 EDAKRSLLNDLHILDLETMTWDEIDAVGV--PPSPRSDHAAAVHAERYLLIFGGGSHAACF--NDLHVLDLQTMEWSRPT 390 (572)
Q Consensus 315 ~~~~~~~~~~v~~yd~~t~~W~~v~~~g~--~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~--~~v~~yd~~t~~W~~v~ 390 (572)
.+....-..++|++|..+..|..+..... --.|++ +..++|..|.|+=|+..+... ..+|+|++.+++-+.+-
T Consensus 80 ~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~---i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly 156 (200)
T PF15525_consen 80 PEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKY---IEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELY 156 (200)
T ss_pred CccccccceeEEEEecCCCceEEEEecCcccccCCce---eEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEee
Confidence 33344457889999999998877643311 234442 334445444444443333322 46999999999888774
No 159
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=36.90 E-value=3e+02 Score=26.88 Aligned_cols=104 Identities=18% Similarity=0.261 Sum_probs=65.6
Q ss_pred eCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceE----EEEEC--CEEEEEecCCCCCCCCCceEE
Q 008260 254 WENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQS----VTLVG--TSLVIFGGEDAKRSLLNDLHI 327 (572)
Q Consensus 254 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~----~~~~~--~~iyv~GG~~~~~~~~~~v~~ 327 (572)
.++.-+..||.+. .+.+||..+.+-.+.- .+|. ++.++ ..+++-|+++. .+..
T Consensus 69 ~Dnskf~s~GgDk------~v~vwDV~TGkv~Rr~---------rgH~aqVNtV~fNeesSVv~SgsfD~------s~r~ 127 (307)
T KOG0316|consen 69 SDNSKFASCGGDK------AVQVWDVNTGKVDRRF---------RGHLAQVNTVRFNEESSVVASGSFDS------SVRL 127 (307)
T ss_pred ccccccccCCCCc------eEEEEEcccCeeeeec---------ccccceeeEEEecCcceEEEeccccc------eeEE
Confidence 4566666666654 4889999887643321 1222 23333 35777777643 4778
Q ss_pred EECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEE
Q 008260 328 LDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (572)
Q Consensus 328 yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~ 387 (572)
+|...+..+.+... ...+.+...+.+.+. .+|.|-.+ ..+-.||+...+-.
T Consensus 128 wDCRS~s~ePiQil---dea~D~V~Si~v~~h-eIvaGS~D-----GtvRtydiR~G~l~ 178 (307)
T KOG0316|consen 128 WDCRSRSFEPIQIL---DEAKDGVSSIDVAEH-EIVAGSVD-----GTVRTYDIRKGTLS 178 (307)
T ss_pred EEcccCCCCccchh---hhhcCceeEEEeccc-EEEeeccC-----CcEEEEEeecceee
Confidence 89888888877766 667777777777654 65555443 34778888766543
No 160
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=36.71 E-value=5e+02 Score=26.88 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=64.4
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCC---CCCcc
Q 008260 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTK---DPSEI 271 (572)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~---~~~~~ 271 (572)
.++||.--.... ....+++||..+++-.-.- +..-.++.+..- +..+|+..=+.. .+...
T Consensus 3 ~rvyV~D~~~~~-~~~rv~viD~d~~k~lGmi---------------~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~Rt 66 (342)
T PF06433_consen 3 HRVYVQDPVFFH-MTSRVYVIDADSGKLLGMI---------------DTGFLGNVALSPDGKTIYVAETFYSRGTRGERT 66 (342)
T ss_dssp TEEEEEE-GGGG-SSEEEEEEETTTTEEEEEE---------------EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEE
T ss_pred cEEEEECCcccc-ccceEEEEECCCCcEEEEe---------------ecccCCceeECCCCCEEEEEEEEEeccccccce
Confidence 578887552221 2358999998887754332 234445544443 456676653322 13567
Q ss_pred eeEEEEECCCCc--eEEeccCCCCCCCCcce-----EEEE--ECCEEEEEecCCCCCCCCCceEEEECCCCcEEE
Q 008260 272 IQVKVFDLQTCS--WSTLKTYGKPPVSRGGQ-----SVTL--VGTSLVIFGGEDAKRSLLNDLHILDLETMTWDE 337 (572)
Q Consensus 272 ~~v~~yd~~~~~--W~~~~~~g~~p~~R~~~-----~~~~--~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 337 (572)
+-|.+||+.+.+ ++..-+ +.+|... ...+ .+..+||+-= .....|-+.|++..+...
T Consensus 67 Dvv~~~D~~TL~~~~EI~iP----~k~R~~~~~~~~~~~ls~dgk~~~V~N~-----TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 67 DVVEIWDTQTLSPTGEIEIP----PKPRAQVVPYKNMFALSADGKFLYVQNF-----TPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp EEEEEEETTTTEEEEEEEET----TS-B--BS--GGGEEE-TTSSEEEEEEE-----SSSEEEEEEETTTTEEEE
T ss_pred eEEEEEecCcCcccceEecC----CcchheecccccceEEccCCcEEEEEcc-----CCCCeEEEEECCCCceee
Confidence 789999999984 443321 1224321 1222 2446776522 235678999999887644
No 161
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=36.00 E-value=5.8e+02 Score=27.44 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=38.5
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t 332 (572)
.+.+++.|+.+. .|.++|+.+.+-...- ..-...-.++.+ ++.+++.+.++ ..+.+||+.+
T Consensus 257 ~g~~i~Sgs~D~------tvriWd~~~~~~~~~l-----~~hs~~is~~~f~~d~~~l~s~s~d------~~i~vwd~~~ 319 (456)
T KOG0266|consen 257 DGNLLVSGSDDG------TVRIWDVRTGECVRKL-----KGHSDGISGLAFSPDGNLLVSASYD------GTIRVWDLET 319 (456)
T ss_pred CCCEEEEecCCC------cEEEEeccCCeEEEee-----eccCCceEEEEECCCCCEEEEcCCC------ccEEEEECCC
Confidence 458888888875 4889999885433321 111112222222 56777777542 3488999887
Q ss_pred CcE
Q 008260 333 MTW 335 (572)
Q Consensus 333 ~~W 335 (572)
..-
T Consensus 320 ~~~ 322 (456)
T KOG0266|consen 320 GSK 322 (456)
T ss_pred Cce
Confidence 774
No 162
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=35.50 E-value=4.3e+02 Score=25.74 Aligned_cols=155 Identities=14% Similarity=0.110 Sum_probs=77.2
Q ss_pred EEEECCEEEEEccCCC-CcccCcEEEEEcC-CCcEEEeeecccccCCCCCCCCCCCCCcceeEEE-e-CCEEEEEeccCC
Q 008260 191 AAVVQDKMYIYGGNHN-GRYLSDMHILDLR-SWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-W-ENKLLSIAGHTK 266 (572)
Q Consensus 191 ~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~-t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~-~-~~~iyv~GG~~~ 266 (572)
+..-++++++. .+.. .........|... ..+|+...... ......+...+ . ++.|+++--..
T Consensus 114 i~~~~G~l~~~-~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~------------~~~~~~e~~~~~~~dG~l~~~~R~~- 179 (275)
T PF13088_consen 114 IQLPDGRLIAP-YYHESGGSFSAFVYYSDDGGKTWSSGSPIP------------DGQGECEPSIVELPDGRLLAVFRTE- 179 (275)
T ss_dssp EEECTTEEEEE-EEEESSCEEEEEEEEESSTTSSEEEEEECE------------CSEEEEEEEEEEETTSEEEEEEEEC-
T ss_pred eEecCCCEEEE-EeeccccCcceEEEEeCCCCceeecccccc------------ccCCcceeEEEECCCCcEEEEEEcc-
Confidence 34447788776 2111 1122334445544 46799887642 12233333333 3 67888886543
Q ss_pred CCCcceeEEEEECC-CCceEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCC
Q 008260 267 DPSEIIQVKVFDLQ-TCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVP 344 (572)
Q Consensus 267 ~~~~~~~v~~yd~~-~~~W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~ 344 (572)
... .....+... -.+|+..... .+|.......+... +++++++......+ ..-.+++-.-...+|+.+......
T Consensus 180 ~~~--~~~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r-~~l~l~~S~D~g~tW~~~~~i~~~ 255 (275)
T PF13088_consen 180 GND--DIYISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGR-SNLSLYVSEDGGKTWSRPKTIDDG 255 (275)
T ss_dssp SST--EEEEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTS-EEEEEEEECTTCEEEEEEEEEEEE
T ss_pred CCC--cEEEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCC-CceEEEEEeCCCCcCCccEEEeCC
Confidence 111 334444444 3679987533 35665555555554 56888887732222 111233323347789876544211
Q ss_pred CCcccc-eEEEEEcCCEEEE
Q 008260 345 PSPRSD-HAAAVHAERYLLI 363 (572)
Q Consensus 345 p~~R~~-~~~~~~~~~~lyv 363 (572)
+..... .+++...++.|+|
T Consensus 256 ~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 256 PNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp E-CCEEEEEEEEEETTEEEE
T ss_pred CCCcEECCeeEEeCCCcCCC
Confidence 212233 3445556677876
No 163
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=34.70 E-value=5.4e+02 Score=26.63 Aligned_cols=153 Identities=16% Similarity=0.138 Sum_probs=80.9
Q ss_pred EEECCEEEEEccCCCCcccCcEEEEEcCCCc--EEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCC
Q 008260 192 AVVQDKMYIYGGNHNGRYLSDMHILDLRSWA--WSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPS 269 (572)
Q Consensus 192 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~ 269 (572)
+..++++|+... .+ .++.+|+.+.+ |+...... .....-....-+++||+-.. +.
T Consensus 65 ~~~dg~v~~~~~--~G----~i~A~d~~~g~~~W~~~~~~~-------------~~~~~~~~~~~~G~i~~g~~-~g--- 121 (370)
T COG1520 65 ADGDGTVYVGTR--DG----NIFALNPDTGLVKWSYPLLGA-------------VAQLSGPILGSDGKIYVGSW-DG--- 121 (370)
T ss_pred EeeCCeEEEecC--CC----cEEEEeCCCCcEEecccCcCc-------------ceeccCceEEeCCeEEEecc-cc---
Confidence 666889998611 11 79999999876 87543310 00011111112677665433 22
Q ss_pred cceeEEEEECCC--CceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCC--CcEEEeeCCCCCC
Q 008260 270 EIIQVKVFDLQT--CSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLET--MTWDEIDAVGVPP 345 (572)
Q Consensus 270 ~~~~v~~yd~~~--~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t--~~W~~v~~~g~~p 345 (572)
.+++||..+ ..|+.-... . .+..-.+++.++.+|+.- ..+.++.+|.++ ..|+.-...+ .
T Consensus 122 ---~~y~ld~~~G~~~W~~~~~~---~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~--~ 185 (370)
T COG1520 122 ---KLYALDASTGTLVWSRNVGG---S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP--L 185 (370)
T ss_pred ---eEEEEECCCCcEEEEEecCC---C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc--c
Confidence 789999854 458777532 1 333334444455665542 134588888774 4687544321 1
Q ss_pred CcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCC--cEEe
Q 008260 346 SPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM--EWSR 388 (572)
Q Consensus 346 ~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~ 388 (572)
..+...... ..++.+|+ |..+ .-..++.+|+++. .|+.
T Consensus 186 ~~~~~~~~~-~~~~~vy~-~~~~---~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 186 SLSIYGSPA-IASGTVYV-GSDG---YDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred ccccccCce-eecceEEE-ecCC---CcceEEEEEccCCcEeeee
Confidence 222222222 44553444 4332 1236999999765 4774
No 164
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=33.39 E-value=5.9e+02 Score=26.74 Aligned_cols=102 Identities=14% Similarity=0.163 Sum_probs=56.4
Q ss_pred cceEEecccCCCCCCCCcceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCC--c
Q 008260 170 YDQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPC--A 247 (572)
Q Consensus 170 ~~~W~~~~~~g~~p~~R~~~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R--~ 247 (572)
.+.|+.+.. . .-..--++..++++|++.- ...++.+|..- +-.++.+... ..+...+ .
T Consensus 189 ~~~Wt~l~~----~-~~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l-~i~~v~~~i~--------~~~~~g~~~~ 248 (373)
T PLN03215 189 GNVLKALKQ----M-GYHFSDIIVHKGQTYALDS------IGIVYWINSDL-EFSRFGTSLD--------ENITDGCWTG 248 (373)
T ss_pred CCeeeEccC----C-CceeeEEEEECCEEEEEcC------CCeEEEEecCC-ceeeecceec--------ccccCCcccC
Confidence 489998862 2 2334677888999999832 23577777421 1122221110 0000011 1
Q ss_pred ceeEEEeCCEEEEEeccCCCC-------------CcceeEEEEECCCCceEEeccCC
Q 008260 248 GHSLIPWENKLLSIAGHTKDP-------------SEIIQVKVFDLQTCSWSTLKTYG 291 (572)
Q Consensus 248 ~hs~~~~~~~iyv~GG~~~~~-------------~~~~~v~~yd~~~~~W~~~~~~g 291 (572)
..-.+...|.++++....... ...-.|+..|....+|.++...|
T Consensus 249 ~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 249 DRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred ceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 233556678899988753211 01235566688889999998554
No 165
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=32.87 E-value=4.9e+02 Score=25.62 Aligned_cols=112 Identities=18% Similarity=0.229 Sum_probs=61.9
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeC-CEEEEEeccCCCCCccee
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWE-NKLLSIAGHTKDPSEIIQ 273 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~-~~iyv~GG~~~~~~~~~~ 273 (572)
.|.|+..|| -..+|..|+++.+.+..-- ...-+-|+++.-+ +--++-|+.++ .
T Consensus 126 enSi~~AgG------D~~~y~~dlE~G~i~r~~r--------------GHtDYvH~vv~R~~~~qilsG~EDG------t 179 (325)
T KOG0649|consen 126 ENSILFAGG------DGVIYQVDLEDGRIQREYR--------------GHTDYVHSVVGRNANGQILSGAEDG------T 179 (325)
T ss_pred CCcEEEecC------CeEEEEEEecCCEEEEEEc--------------CCcceeeeeeecccCcceeecCCCc------c
Confidence 477888888 1358899999998876532 1334566666532 33344566554 4
Q ss_pred EEEEECCCCceEEe-ccCCCCCCCC--cce--EEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEee
Q 008260 274 VKVFDLQTCSWSTL-KTYGKPPVSR--GGQ--SVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEID 339 (572)
Q Consensus 274 v~~yd~~~~~W~~~-~~~g~~p~~R--~~~--~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~ 339 (572)
+.++|..+.+=.+. .+......-| .+- .+...+..-.|.||- ..+-.+++...+=+.+-
T Consensus 180 vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-------p~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 180 VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-------PKLSLWHLRSSESTCVF 243 (325)
T ss_pred EEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-------CceeEEeccCCCceEEE
Confidence 78888888764433 2221222223 222 334445555566663 12445555555555443
No 166
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.67 E-value=6.3e+02 Score=26.51 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=75.4
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCC--cEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCC----CC
Q 008260 196 DKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKD----PS 269 (572)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~----~~ 269 (572)
..|+.+||..+ .+.+..+|+... .|+.-.. |.-+-+--+-++..-|-.+-|.... ..
T Consensus 161 p~Iva~GGke~---~n~lkiwdle~~~qiw~aKNv--------------pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T 223 (412)
T KOG3881|consen 161 PYIVATGGKEN---INELKIWDLEQSKQIWSAKNV--------------PNDRLGLRVPVWITDIRFLEGSPNYKFATIT 223 (412)
T ss_pred CceEecCchhc---ccceeeeecccceeeeeccCC--------------CCccccceeeeeeccceecCCCCCceEEEEe
Confidence 45888899432 567777777654 4654332 2233333333332222222221100 12
Q ss_pred cceeEEEEECCCCceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCccc
Q 008260 270 EIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (572)
Q Consensus 270 ~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~ 349 (572)
....|..||+.... +.+.....+-.+.++.+.+.-++.|| +|- ...++..||..+.+---..-.|..-..|+
T Consensus 224 ~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy-~gn------~~g~l~~FD~r~~kl~g~~~kg~tGsirs 295 (412)
T KOG3881|consen 224 RYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIY-TGN------TKGQLAKFDLRGGKLLGCGLKGITGSIRS 295 (412)
T ss_pred cceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEE-Eec------ccchhheecccCceeeccccCCccCCcce
Confidence 34578899988544 22221112223333333333344444 443 35568899988776432211222223333
Q ss_pred ceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCC
Q 008260 350 DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM 384 (572)
Q Consensus 350 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~ 384 (572)
..++....++..+|-+ .-+-+||.+++
T Consensus 296 ---ih~hp~~~~las~GLD-----RyvRIhD~ktr 322 (412)
T KOG3881|consen 296 ---IHCHPTHPVLASCGLD-----RYVRIHDIKTR 322 (412)
T ss_pred ---EEEcCCCceEEeeccc-----eeEEEeecccc
Confidence 2334444577777754 34778888873
No 167
>PTZ00420 coronin; Provisional
Probab=31.19 E-value=7.9e+02 Score=27.49 Aligned_cols=115 Identities=10% Similarity=0.132 Sum_probs=54.5
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCceEE-eccCCCCCCCCcceEEEE----ECCEEEEEecCCCCCCCCCceEEEE
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWST-LKTYGKPPVSRGGQSVTL----VGTSLVIFGGEDAKRSLLNDLHILD 329 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~g~~p~~R~~~~~~~----~~~~iyv~GG~~~~~~~~~~v~~yd 329 (572)
++.+++.++.+. .+.+||+.+.+=.. +. + ....+....... -++..++.+|.+... ...+.+||
T Consensus 178 dG~lLat~s~D~------~IrIwD~Rsg~~i~tl~--g-H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~--~R~VkLWD 246 (568)
T PTZ00420 178 KGNLLSGTCVGK------HMHIIDPRKQEIASSFH--I-HDGGKNTKNIWIDGLGGDDNYILSTGFSKNN--MREMKLWD 246 (568)
T ss_pred CCCEEEEEecCC------EEEEEECCCCcEEEEEe--c-ccCCceeEEEEeeeEcCCCCEEEEEEcCCCC--ccEEEEEE
Confidence 677777776543 58999998754221 11 0 011111111111 134566666765432 34588899
Q ss_pred CCCC-cEEEeeCCCCCCCcccceEEEE--EcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEee
Q 008260 330 LETM-TWDEIDAVGVPPSPRSDHAAAV--HAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 330 ~~t~-~W~~v~~~g~~p~~R~~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v 389 (572)
+.+. .-...... .. ..+..... ..++.+|+.|..+ ..+..|+.....-..+
T Consensus 247 lr~~~~pl~~~~l---d~-~~~~L~p~~D~~tg~l~lsGkGD-----~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 247 LKNTTSALVTMSI---DN-ASAPLIPHYDESTGLIYLIGKGD-----GNCRYYQHSLGSIRKV 300 (568)
T ss_pred CCCCCCceEEEEe---cC-CccceEEeeeCCCCCEEEEEECC-----CeEEEEEccCCcEEee
Confidence 7742 21111111 00 00000111 1235688888654 4577888766544444
No 168
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=30.27 E-value=4e+02 Score=29.07 Aligned_cols=107 Identities=20% Similarity=0.241 Sum_probs=56.3
Q ss_pred CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEE-cCCEEEEEeCCCCCcCcCcEEEEECCCC
Q 008260 306 GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTM 384 (572)
Q Consensus 306 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~ 384 (572)
++..+++||.++. +++|.+....-.+.... ...|...+.+.+ .++.+++.|-.+ ..+-.||.+++
T Consensus 454 ~~~~vaVGG~Dgk------vhvysl~g~~l~ee~~~---~~h~a~iT~vaySpd~~yla~~Da~-----rkvv~yd~~s~ 519 (603)
T KOG0318|consen 454 DGSEVAVGGQDGK------VHVYSLSGDELKEEAKL---LEHRAAITDVAYSPDGAYLAAGDAS-----RKVVLYDVASR 519 (603)
T ss_pred CCCEEEEecccce------EEEEEecCCcccceeee---ecccCCceEEEECCCCcEEEEeccC-----CcEEEEEcccC
Confidence 4556677776543 78887776553333222 233444444444 455566665433 56778887765
Q ss_pred cEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCC
Q 008260 385 EWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSH 449 (572)
Q Consensus 385 ~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~ 449 (572)
+-.... - ..-++|.. ++.+.- .+.++.-|+.+. .|++|+.+.
T Consensus 520 ~~~~~~-w-~FHtakI~--~~aWsP---------------~n~~vATGSlDt----~Viiysv~k 561 (603)
T KOG0318|consen 520 EVKTNR-W-AFHTAKIN--CVAWSP---------------NNKLVATGSLDT----NVIIYSVKK 561 (603)
T ss_pred ceecce-e-eeeeeeEE--EEEeCC---------------CceEEEeccccc----eEEEEEccC
Confidence 431110 0 02233332 222222 337888888774 478887654
No 169
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=30.13 E-value=6.9e+02 Score=26.51 Aligned_cols=105 Identities=10% Similarity=0.185 Sum_probs=59.2
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCC---CceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQT---CSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLE 331 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~---~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~ 331 (572)
++.=+|.|+-+. .+..+|... ..|+-+.. ......+++..+..+++.+ . -..+..|+.+
T Consensus 323 Dg~~~V~Gs~dr------~i~~wdlDgn~~~~W~gvr~-----~~v~dlait~Dgk~vl~v~-~------d~~i~l~~~e 384 (519)
T KOG0293|consen 323 DGFRFVTGSPDR------TIIMWDLDGNILGNWEGVRD-----PKVHDLAITYDGKYVLLVT-V------DKKIRLYNRE 384 (519)
T ss_pred CCceeEecCCCC------cEEEecCCcchhhccccccc-----ceeEEEEEcCCCcEEEEEe-c------ccceeeechh
Confidence 677788888763 466677665 45776642 1223334444466777776 1 2346677766
Q ss_pred CCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEee
Q 008260 332 TMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (572)
Q Consensus 332 t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~v 389 (572)
+..=..+-. ...-.++.++..++++.++-=.+ ..++.+|++ +|..+
T Consensus 385 ~~~dr~lis-----e~~~its~~iS~d~k~~LvnL~~-----qei~LWDl~--e~~lv 430 (519)
T KOG0293|consen 385 ARVDRGLIS-----EEQPITSFSISKDGKLALVNLQD-----QEIHLWDLE--ENKLV 430 (519)
T ss_pred hhhhhcccc-----ccCceeEEEEcCCCcEEEEEccc-----CeeEEeecc--hhhHH
Confidence 554332211 12223455666677777764322 568888888 45544
No 170
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=29.80 E-value=6.8e+02 Score=28.12 Aligned_cols=68 Identities=25% Similarity=0.395 Sum_probs=39.4
Q ss_pred CCEEEEEecCCCCCCCCCceEEEECCCCcE------EEeeCCCCCC-Ccccc-eEEEEEcCCEEEEEeCCCCCcCcCcEE
Q 008260 306 GTSLVIFGGEDAKRSLLNDLHILDLETMTW------DEIDAVGVPP-SPRSD-HAAAVHAERYLLIFGGGSHAACFNDLH 377 (572)
Q Consensus 306 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W------~~v~~~g~~p-~~R~~-~~~~~~~~~~lyv~GG~~~~~~~~~v~ 377 (572)
++.+++-||.+.. +.++|.++..= ..+... ..+ .++.. ++.+.-+.+.+++-||.. +++-
T Consensus 129 ~~~lvaSgGLD~~------IflWDin~~~~~l~~s~n~~t~~-sl~sG~k~siYSLA~N~t~t~ivsGgte-----k~lr 196 (735)
T KOG0308|consen 129 NNELVASGGLDRK------IFLWDINTGTATLVASFNNVTVN-SLGSGPKDSIYSLAMNQTGTIIVSGGTE-----KDLR 196 (735)
T ss_pred CceeEEecCCCcc------EEEEEccCcchhhhhhccccccc-cCCCCCccceeeeecCCcceEEEecCcc-----cceE
Confidence 6789999997644 77777765422 222211 112 23322 333333445677777753 6889
Q ss_pred EEECCCCc
Q 008260 378 VLDLQTME 385 (572)
Q Consensus 378 ~yd~~t~~ 385 (572)
.||+.+..
T Consensus 197 ~wDprt~~ 204 (735)
T KOG0308|consen 197 LWDPRTCK 204 (735)
T ss_pred Eecccccc
Confidence 99998753
No 171
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=29.58 E-value=9.1e+02 Score=27.75 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=57.0
Q ss_pred eCCEEEEEeccCCCCCcceeEEEEECCCCc-eEEeccCCCCCCCCcceEEEEE--CCEEEEEecCCCCCCCCCceEEEEC
Q 008260 254 WENKLLSIAGHTKDPSEIIQVKVFDLQTCS-WSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDL 330 (572)
Q Consensus 254 ~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~g~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~ 330 (572)
-++.+.+.|+.++. |.+||..+.- ..+.. +. -.+++++.+ .++..+.--.+ ..|-.+|+
T Consensus 360 pDgq~iaTG~eDgK------VKvWn~~SgfC~vTFt---eH---ts~Vt~v~f~~~g~~llssSLD------GtVRAwDl 421 (893)
T KOG0291|consen 360 PDGQLIATGAEDGK------VKVWNTQSGFCFVTFT---EH---TSGVTAVQFTARGNVLLSSSLD------GTVRAWDL 421 (893)
T ss_pred CCCcEEEeccCCCc------EEEEeccCceEEEEec---cC---CCceEEEEEEecCCEEEEeecC------CeEEeeee
Confidence 37888888888764 7777765532 11111 11 123333322 33443333222 23666666
Q ss_pred CCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEEe
Q 008260 331 ETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (572)
Q Consensus 331 ~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~ 388 (572)
...+=-+-- ..|.|+.+.+.++-..+-|++.|+.+. -+|++++.++.+--.
T Consensus 422 kRYrNfRTf---t~P~p~QfscvavD~sGelV~AG~~d~----F~IfvWS~qTGqllD 472 (893)
T KOG0291|consen 422 KRYRNFRTF---TSPEPIQFSCVAVDPSGELVCAGAQDS----FEIFVWSVQTGQLLD 472 (893)
T ss_pred cccceeeee---cCCCceeeeEEEEcCCCCEEEeeccce----EEEEEEEeecCeeee
Confidence 544322221 237777777766654465777777542 345555555554433
No 172
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=29.06 E-value=5.8e+02 Score=27.84 Aligned_cols=122 Identities=15% Similarity=0.224 Sum_probs=60.9
Q ss_pred CCCcceeEEEe--CCEEEEEeccCCCCCcceeEEEEECCCCceEEeccC--CCCCCCCcceEEEEE--CCEEEEEecCCC
Q 008260 244 TPCAGHSLIPW--ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTY--GKPPVSRGGQSVTLV--GTSLVIFGGEDA 317 (572)
Q Consensus 244 ~~R~~hs~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~--g~~p~~R~~~~~~~~--~~~iyv~GG~~~ 317 (572)
..|...+.|.+ ++++ +.+|.... +|..++. ..|..-+.. .....+-...+++.+ .+++.+--|.++
T Consensus 315 g~Rv~~tsC~~nrdg~~-iAagc~DG-----SIQ~W~~--~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~ 386 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKL-IAAGCLDG-----SIQIWDK--GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD 386 (641)
T ss_pred CcccCceeeecCCCcch-hhhcccCC-----ceeeeec--CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC
Confidence 45666677777 4566 56665544 5677765 333322210 011222222333333 455555555543
Q ss_pred CCCCCCceEEEECCC-----CcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCc-CcEEEEECCCCc
Q 008260 318 KRSLLNDLHILDLET-----MTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACF-NDLHVLDLQTME 385 (572)
Q Consensus 318 ~~~~~~~v~~yd~~t-----~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~-~~v~~yd~~t~~ 385 (572)
. +-++|+.. +.|+-+. .+--.--+|...+.+|++.|-....... ..++.||..+..
T Consensus 387 t------LKvWDLrq~kkpL~~~tgL~------t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 387 T------LKVWDLRQFKKPLNVRTGLP------TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred c------eeeeeccccccchhhhcCCC------ccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 3 44455443 3455543 3222333444556678888865433322 358888876643
No 173
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=27.84 E-value=9.5e+02 Score=27.97 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=21.3
Q ss_pred eEEEeCCEEEEEeccCCCCCcceeEEEEECCCCc--eEEec
Q 008260 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCS--WSTLK 288 (572)
Q Consensus 250 s~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~ 288 (572)
+-+.+++.||+.... +.|+.+|..+.+ |+.-.
T Consensus 189 TPlvvgg~lYv~t~~-------~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 189 TPLKVGDTLYLCTPH-------NKVIALDAATGKEKWKFDP 222 (764)
T ss_pred CCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcC
Confidence 345669999998443 367888877643 76543
No 174
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=27.34 E-value=5.3e+02 Score=24.27 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=45.1
Q ss_pred cCCCCCcceeEEEEECCCCceEEeccCCC--CCCCCcceEEEEECCEE-EEEecCCCCCCCCCceEEEECCCCcEEEeeC
Q 008260 264 HTKDPSEIIQVKVFDLQTCSWSTLKTYGK--PPVSRGGQSVTLVGTSL-VIFGGEDAKRSLLNDLHILDLETMTWDEIDA 340 (572)
Q Consensus 264 ~~~~~~~~~~v~~yd~~~~~W~~~~~~g~--~p~~R~~~~~~~~~~~i-yv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~ 340 (572)
.....+....+|++|..++.|..+..... --.|. ...-+.+..| +++|..-+.-.--..|++|++.+..=+.+-.
T Consensus 80 ~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 80 PEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred CccccccceeEEEEecCCCceEEEEecCcccccCCc--eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeee
Confidence 33345678899999999999887743211 11233 1222224444 4445332222224579999999999888865
Q ss_pred C
Q 008260 341 V 341 (572)
Q Consensus 341 ~ 341 (572)
.
T Consensus 158 ~ 158 (200)
T PF15525_consen 158 W 158 (200)
T ss_pred c
Confidence 4
No 175
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=26.63 E-value=7.5e+02 Score=25.77 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=45.0
Q ss_pred EEEE-cCCEEEEE--eCC--CCCcCcCcEEEEECCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCE
Q 008260 353 AAVH-AERYLLIF--GGG--SHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDV 427 (572)
Q Consensus 353 ~~~~-~~~~lyv~--GG~--~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~ 427 (572)
+++. .++++||. ||. ++...-+.++++|.++.+=... ++..+.-+..++-.+ ++..
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~-----i~vG~~~~~iavS~D--------------gkp~ 313 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK-----IELGHEIDSINVSQD--------------AKPL 313 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEE-----EeCCCceeeEEECCC--------------CCeE
Confidence 3443 45678884 222 2223346899999877654432 344555566666554 1336
Q ss_pred EEEEcCCCCCccCcEEEEeCCCCcc
Q 008260 428 IVAFGGYNGRYNNEVHVLKPSHKST 452 (572)
Q Consensus 428 l~v~GG~~~~~~~dv~~yd~~~~~~ 452 (572)
||+.=+ ..++|.++|..+.+-
T Consensus 314 lyvtn~----~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 314 LYALST----GDKTLYIFDAETGKE 334 (352)
T ss_pred EEEeCC----CCCcEEEEECcCCeE
Confidence 777644 246799999877633
No 176
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=26.49 E-value=7.3e+02 Score=25.61 Aligned_cols=110 Identities=14% Similarity=0.172 Sum_probs=58.6
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCC--CcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcce
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRS--WAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEII 272 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~ 272 (572)
+++||+-.. .+ .+++||..+ ..|+.-... . ++..-..+..++.+|+.- ...
T Consensus 111 ~G~i~~g~~-~g-----~~y~ld~~~G~~~W~~~~~~-------------~-~~~~~~~v~~~~~v~~~s-------~~g 163 (370)
T COG1520 111 DGKIYVGSW-DG-----KLYALDASTGTLVWSRNVGG-------------S-PYYASPPVVGDGTVYVGT-------DDG 163 (370)
T ss_pred CCeEEEecc-cc-----eEEEEECCCCcEEEEEecCC-------------C-eEEecCcEEcCcEEEEec-------CCC
Confidence 677775544 22 799999864 457764321 1 333344455566777663 123
Q ss_pred eEEEEECCC--CceEEeccCCCCCCCCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCC--cEEEe
Q 008260 273 QVKVFDLQT--CSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM--TWDEI 338 (572)
Q Consensus 273 ~v~~yd~~~--~~W~~~~~~g~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~v 338 (572)
.++.+|..+ ..|+.-...+ . ..+.....+...+.+|+ |... ....++.+|+++. .|+.-
T Consensus 164 ~~~al~~~tG~~~W~~~~~~~-~-~~~~~~~~~~~~~~vy~-~~~~----~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 164 HLYALNADTGTLKWTYETPAP-L-SLSIYGSPAIASGTVYV-GSDG----YDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred eEEEEEccCCcEEEEEecCCc-c-ccccccCceeecceEEE-ecCC----CcceEEEEEccCCcEeeeee
Confidence 577888775 4587554221 1 22222222233455554 4332 1225889998654 58753
No 177
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=26.26 E-value=1.6e+02 Score=19.37 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=16.4
Q ss_pred eeEEEECCEEEEEccCCCCcccCcEEEEEcCC
Q 008260 189 HGAAVVQDKMYIYGGNHNGRYLSDMHILDLRS 220 (572)
Q Consensus 189 ~s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t 220 (572)
.+.++.++.||+.+. -..++++|+.+
T Consensus 15 ~~~~v~~g~vyv~~~------dg~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTG------DGNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-T------TSEEEEEETT-
T ss_pred cCCEEECCEEEEEcC------CCEEEEEeCCC
Confidence 445667899888765 24688888764
No 178
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=25.12 E-value=1.9e+02 Score=29.80 Aligned_cols=73 Identities=19% Similarity=0.217 Sum_probs=38.7
Q ss_pred CCEEEEEec---CCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCC--EEEEEeCCCCCcCcCcEEEEE
Q 008260 306 GTSLVIFGG---EDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAER--YLLIFGGGSHAACFNDLHVLD 380 (572)
Q Consensus 306 ~~~iyv~GG---~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~--~lyv~GG~~~~~~~~~v~~yd 380 (572)
.++|||.-- .......-..||+||+.+.+=-..-++ ....-+..+..+. .||..-+.+ .++++||
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-----~~~~~Si~Vsqd~~P~L~~~~~~~-----~~l~v~D 318 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-----EHPIDSIAVSQDDKPLLYALSAGD-----GTLDVYD 318 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-----EEEESEEEEESSSS-EEEEEETTT-----TEEEEEE
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-----CCccceEEEccCCCcEEEEEcCCC-----CeEEEEe
Confidence 678888742 222222345799999998864332211 1212244444443 566542221 5799999
Q ss_pred CCCCcEEe
Q 008260 381 LQTMEWSR 388 (572)
Q Consensus 381 ~~t~~W~~ 388 (572)
..+.+-..
T Consensus 319 ~~tGk~~~ 326 (342)
T PF06433_consen 319 AATGKLVR 326 (342)
T ss_dssp TTT--EEE
T ss_pred CcCCcEEe
Confidence 99876543
No 179
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=24.94 E-value=8.4e+02 Score=25.76 Aligned_cols=136 Identities=10% Similarity=0.021 Sum_probs=68.1
Q ss_pred ccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEe-CCEEEEEeccCCCCCcceeEEEEECCCCceEEe
Q 008260 209 YLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTL 287 (572)
Q Consensus 209 ~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 287 (572)
..+.+...|+.+.+.+.+-.. ..-.+|.-..- +..+++|.-..+-......||..|........+
T Consensus 166 p~~~i~~idl~tG~~~~v~~~--------------~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v 231 (386)
T PF14583_consen 166 PHCRIFTIDLKTGERKVVFED--------------TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV 231 (386)
T ss_dssp --EEEEEEETTT--EEEEEEE--------------SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES
T ss_pred CCceEEEEECCCCceeEEEec--------------CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee
Confidence 456789999999998877653 23345554443 556666644433323445899999887776666
Q ss_pred ccCCCCCCCCcceEEEEEC-CEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeC
Q 008260 288 KTYGKPPVSRGGQSVTLVG-TSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGG 366 (572)
Q Consensus 288 ~~~g~~p~~R~~~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG 366 (572)
.. .++....+|-.-.-+ ..|+..+...+.. -.-+..||++|..=+.+.. .|+..|-.+... +.|++--|
T Consensus 232 ~~--~~~~e~~gHEfw~~DG~~i~y~~~~~~~~--~~~i~~~d~~t~~~~~~~~-----~p~~~H~~ss~D-g~L~vGDG 301 (386)
T PF14583_consen 232 HR--RMEGESVGHEFWVPDGSTIWYDSYTPGGQ--DFWIAGYDPDTGERRRLME-----MPWCSHFMSSPD-GKLFVGDG 301 (386)
T ss_dssp S-----TTEEEEEEEE-TTSS-EEEEEEETTT----EEEEEE-TTT--EEEEEE-----E-SEEEEEE-TT-SSEEEEEE
T ss_pred ec--CCCCcccccccccCCCCEEEEEeecCCCC--ceEEEeeCCCCCCceEEEe-----CCceeeeEEcCC-CCEEEecC
Confidence 43 244555666655554 4555555433322 2358889999876555543 335666666654 44776555
Q ss_pred CC
Q 008260 367 GS 368 (572)
Q Consensus 367 ~~ 368 (572)
.+
T Consensus 302 ~d 303 (386)
T PF14583_consen 302 GD 303 (386)
T ss_dssp --
T ss_pred CC
Confidence 43
No 180
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=24.32 E-value=8.9e+02 Score=25.87 Aligned_cols=94 Identities=17% Similarity=0.240 Sum_probs=47.5
Q ss_pred CCEEEEEeccCCCCCcceeEEEEECCCCc-eEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCC
Q 008260 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCS-WSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLET 332 (572)
Q Consensus 255 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t 332 (572)
+|-.|+.-+.++. .|.+||+...+ ...+. ++....-.+.... .+...+++|.+ -.||.|+-.+
T Consensus 399 ENGY~Lat~add~-----~V~lwDLRKl~n~kt~~----l~~~~~v~s~~fD~SGt~L~~~g~~------l~Vy~~~k~~ 463 (506)
T KOG0289|consen 399 ENGYWLATAADDG-----SVKLWDLRKLKNFKTIQ----LDEKKEVNSLSFDQSGTYLGIAGSD------LQVYICKKKT 463 (506)
T ss_pred cCceEEEEEecCC-----eEEEEEehhhcccceee----ccccccceeEEEcCCCCeEEeecce------eEEEEEeccc
Confidence 4444444444433 48899987654 22222 2222211122222 35556666532 2377778889
Q ss_pred CcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeC
Q 008260 333 MTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGG 366 (572)
Q Consensus 333 ~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG 366 (572)
..|+.+... +.-..-...+.+++..-|++-|
T Consensus 464 k~W~~~~~~---~~~sg~st~v~Fg~~aq~l~s~ 494 (506)
T KOG0289|consen 464 KSWTEIKEL---ADHSGLSTGVRFGEHAQYLAST 494 (506)
T ss_pred ccceeeehh---hhcccccceeeecccceEEeec
Confidence 999999866 2211223344555544454443
No 181
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.08 E-value=7.7e+02 Score=25.07 Aligned_cols=97 Identities=14% Similarity=0.235 Sum_probs=55.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCCCCcceeE
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~~~~~~~v 274 (572)
+++||+.=+ ++..---+|..|.++..-+++...+ .+ -.+...+..+|-+ ..-....+.+
T Consensus 117 ~D~LLlAR~--DGh~nLGvy~ldr~~g~~~~L~~~p-------------s~---KG~~~~D~a~F~i---~~~~~g~~~i 175 (339)
T PF09910_consen 117 EDRLLLARA--DGHANLGVYSLDRRTGKAEKLSSNP-------------SL---KGTLVHDYACFGI---NNFHKGVSGI 175 (339)
T ss_pred cCEEEEEec--CCcceeeeEEEcccCCceeeccCCC-------------Cc---CceEeeeeEEEec---cccccCCceE
Confidence 467776643 2223336888898888888776432 22 2233334444433 3233567789
Q ss_pred EEEECCCCce--EEecc----CCCCCCCCcceEEEEECCEEEEE
Q 008260 275 KVFDLQTCSW--STLKT----YGKPPVSRGGQSVTLVGTSLVIF 312 (572)
Q Consensus 275 ~~yd~~~~~W--~~~~~----~g~~p~~R~~~~~~~~~~~iyv~ 312 (572)
.+||+.+++| +..+. .|.....|..-.++...+++|.|
T Consensus 176 ~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 176 HCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred EEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 9999999999 44432 12222333444555566776666
No 182
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=23.37 E-value=8.6e+02 Score=25.33 Aligned_cols=121 Identities=14% Similarity=0.066 Sum_probs=68.4
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCcEEEeeecccccCCCCCCCCCCCCCcceeEEEeCCEEEEEeccCCC---CCcc
Q 008260 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKD---PSEI 271 (572)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~iyv~GG~~~~---~~~~ 271 (572)
..++||.-..... ..+.+.++|..+.+-...-+.. ..|| +.+..-+..||+.-.+... +...
T Consensus 12 ~~~v~V~d~~~~~-~~~~v~ViD~~~~~v~g~i~~G------------~~P~--~~~spDg~~lyva~~~~~R~~~G~~~ 76 (352)
T TIGR02658 12 ARRVYVLDPGHFA-ATTQVYTIDGEAGRVLGMTDGG------------FLPN--PVVASDGSFFAHASTVYSRIARGKRT 76 (352)
T ss_pred CCEEEEECCcccc-cCceEEEEECCCCEEEEEEEcc------------CCCc--eeECCCCCEEEEEeccccccccCCCC
Confidence 3568888653222 2288999999886654332221 2333 2233335688988774322 4556
Q ss_pred eeEEEEECCCCceEEeccCCCCCCCCc-----ceEEEEE--CCEEEEEecCCCCCCCCCceEEEECCCCcEEE
Q 008260 272 IQVKVFDLQTCSWSTLKTYGKPPVSRG-----GQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDE 337 (572)
Q Consensus 272 ~~v~~yd~~~~~W~~~~~~g~~p~~R~-----~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 337 (572)
+.|.+||+.+.+-..--.. .+.||. -+..++. +..|||.- . ..-+.+-++|+.+.+-..
T Consensus 77 d~V~v~D~~t~~~~~~i~~--p~~p~~~~~~~~~~~~ls~dgk~l~V~n-~----~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 77 DYVEVIDPQTHLPIADIEL--PEGPRFLVGTYPWMTSLTPDNKTLLFYQ-F----SPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CEEEEEECccCcEEeEEcc--CCCchhhccCccceEEECCCCCEEEEec-C----CCCCEEEEEECCCCcEEE
Confidence 7899999999875433221 233341 1222222 45677751 1 124568888988877644
No 183
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=22.10 E-value=8.1e+02 Score=27.92 Aligned_cols=111 Identities=21% Similarity=0.238 Sum_probs=0.0
Q ss_pred EEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEE
Q 008260 301 SVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLD 380 (572)
Q Consensus 301 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd 380 (572)
++.+.-+.-|+++|..... +-++|..+..-.++-.- .-+.-.+.+...+++-++.|+.+ ..|..+|
T Consensus 540 cv~FHPNs~Y~aTGSsD~t-----VRlWDv~~G~~VRiF~G----H~~~V~al~~Sp~Gr~LaSg~ed-----~~I~iWD 605 (707)
T KOG0263|consen 540 CVSFHPNSNYVATGSSDRT-----VRLWDVSTGNSVRIFTG----HKGPVTALAFSPCGRYLASGDED-----GLIKIWD 605 (707)
T ss_pred eEEECCcccccccCCCCce-----EEEEEcCCCcEEEEecC----CCCceEEEEEcCCCceEeecccC-----CcEEEEE
Q ss_pred CCCCcEEeeccCCCCCCCccccEEEEECCccccceeeeeeccCCCCEEEEEcCCCCCccCcEEEEeCCC
Q 008260 381 LQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSH 449 (572)
Q Consensus 381 ~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~~g~~~l~v~GG~~~~~~~dv~~yd~~~ 449 (572)
+.+ |.+...-.+|+..+.. +..+.+| .+++.||.+ ++|-++|...
T Consensus 606 l~~---------~~~v~~l~~Ht~ti~S---------lsFS~dg--~vLasgg~D----nsV~lWD~~~ 650 (707)
T KOG0263|consen 606 LAN---------GSLVKQLKGHTGTIYS---------LSFSRDG--NVLASGGAD----NSVRLWDLTK 650 (707)
T ss_pred cCC---------CcchhhhhcccCceeE---------EEEecCC--CEEEecCCC----CeEEEEEchh
No 184
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=21.26 E-value=1.1e+03 Score=25.77 Aligned_cols=99 Identities=15% Similarity=0.214 Sum_probs=52.0
Q ss_pred EEEeCCEEEEEeccCCCCCcceeEEEEECCCCceEEeccCCCCCCCCcceEEEEE---CCEEEEEecCCCCCCCCCceEE
Q 008260 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV---GTSLVIFGGEDAKRSLLNDLHI 327 (572)
Q Consensus 251 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~g~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~ 327 (572)
.+.+...|...||...+ ..+..+|+.+.+=..... ....-+...+ .++|....|+.. ++|.+
T Consensus 351 wcP~q~~lLAsGGGs~D----~~i~fwn~~~g~~i~~vd------tgsQVcsL~Wsk~~kEi~sthG~s~-----n~i~l 415 (484)
T KOG0305|consen 351 WCPWQSGLLATGGGSAD----RCIKFWNTNTGARIDSVD------TGSQVCSLIWSKKYKELLSTHGYSE-----NQITL 415 (484)
T ss_pred eCCCccCceEEcCCCcc----cEEEEEEcCCCcEecccc------cCCceeeEEEcCCCCEEEEecCCCC-----CcEEE
Confidence 33446788888887655 356777877654332221 1222222222 456888888743 35666
Q ss_pred EECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCC
Q 008260 328 LDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS 368 (572)
Q Consensus 328 yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~ 368 (572)
|+..+.+ .+..+ .....|..|-+..- ++.-++.|+.+
T Consensus 416 w~~ps~~--~~~~l-~gH~~RVl~la~SP-dg~~i~t~a~D 452 (484)
T KOG0305|consen 416 WKYPSMK--LVAEL-LGHTSRVLYLALSP-DGETIVTGAAD 452 (484)
T ss_pred Eeccccc--eeeee-cCCcceeEEEEECC-CCCEEEEeccc
Confidence 6655532 12211 12455665555554 44455566544
No 185
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=20.92 E-value=1.1e+03 Score=25.70 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=31.2
Q ss_pred ceEEEECCCC----cEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCCcEE
Q 008260 324 DLHILDLETM----TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (572)
Q Consensus 324 ~v~~yd~~t~----~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~ 387 (572)
.|..||.... .|.+... .|..+.+.+..+. .|++.=|++ ..|+.||.....-+
T Consensus 188 ~VtlwDv~g~sp~~~~~~~Hs-----AP~~gicfspsne-~l~vsVG~D-----kki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEAHS-----APCRGICFSPSNE-ALLVSVGYD-----KKINIYDIRSQAST 244 (673)
T ss_pred eEEEEeccCCCcccchhhhcc-----CCcCcceecCCcc-ceEEEeccc-----ceEEEeeccccccc
Confidence 3666776543 3554432 2333444444444 588877775 67999998865543
No 186
>PRK02888 nitrous-oxide reductase; Validated
Probab=20.61 E-value=1.3e+03 Score=26.23 Aligned_cols=136 Identities=18% Similarity=0.193 Sum_probs=73.0
Q ss_pred CcceeEEEEECCCCc--eEEeccCCCCCCCCcceEEEEE-CCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCC
Q 008260 269 SEIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPP 345 (572)
Q Consensus 269 ~~~~~v~~yd~~~~~--W~~~~~~g~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p 345 (572)
+..+.+.+.|..+.+ |+.+-. +|.....+.. ++.+|+. -++... -..+...+..+..|..+-..
T Consensus 212 ey~~~vSvID~etmeV~~qV~Vd------gnpd~v~~spdGk~afvT-syNsE~--G~tl~em~a~e~d~~vvfni---- 278 (635)
T PRK02888 212 KYRSLFTAVDAETMEVAWQVMVD------GNLDNVDTDYDGKYAFST-CYNSEE--GVTLAEMMAAERDWVVVFNI---- 278 (635)
T ss_pred ceeEEEEEEECccceEEEEEEeC------CCcccceECCCCCEEEEe-ccCccc--CcceeeeccccCceEEEEch----
Confidence 344566667777643 544421 1323333333 3445544 222221 23455555555555544322
Q ss_pred CcccceEEEEEcCCEEEEEeCCCCCcCcCcEEEEECCCC---cEEeeccCCCCCCCccccEEEEECCccccceeeeeecc
Q 008260 346 SPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM---EWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSY 422 (572)
Q Consensus 346 ~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~---~W~~v~~~g~~p~~R~~~~~~~~~~~~~iG~s~~~~~~ 422 (572)
.+.. .++-++++.+| +| +.|-++|..+. .+..+. .+|.++.-|.+.+-.+
T Consensus 279 -~~ie--a~vkdGK~~~V-~g-------n~V~VID~~t~~~~~~~v~~---yIPVGKsPHGV~vSPD------------- 331 (635)
T PRK02888 279 -ARIE--EAVKAGKFKTI-GG-------SKVPVVDGRKAANAGSALTR---YVPVPKNPHGVNTSPD------------- 331 (635)
T ss_pred -HHHH--HhhhCCCEEEE-CC-------CEEEEEECCccccCCcceEE---EEECCCCccceEECCC-------------
Confidence 1111 12223445555 43 56889998871 233332 3688888899988876
Q ss_pred CCCCEEEEEcCCCCCccCcEEEEeCCCC
Q 008260 423 SGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (572)
Q Consensus 423 ~g~~~l~v~GG~~~~~~~dv~~yd~~~~ 450 (572)
...+|+-|+.+ ++|-++|.++.
T Consensus 332 --GkylyVanklS----~tVSVIDv~k~ 353 (635)
T PRK02888 332 --GKYFIANGKLS----PTVTVIDVRKL 353 (635)
T ss_pred --CCEEEEeCCCC----CcEEEEEChhh
Confidence 45788887754 66888887774
No 187
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=20.51 E-value=7.8e+02 Score=26.81 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=38.8
Q ss_pred CCcceEEEEECCEEEEEecCCCCCCCCCceEEEECCCCcEEEeeCCCCCCCcccceEEEEEcCCEEEEEeCCCCCcCcCc
Q 008260 296 SRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFND 375 (572)
Q Consensus 296 ~R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~v~~~g~~p~~R~~~~~~~~~~~~lyv~GG~~~~~~~~~ 375 (572)
|-.+.+++..+..|+|-=|++ ..+++||.....-+..-.- ..|. .+.+...++.+++.| ... ..
T Consensus 210 P~~gicfspsne~l~vsVG~D------kki~~yD~~s~~s~~~l~y---~~Pl--stvaf~~~G~~L~aG-~s~----G~ 273 (673)
T KOG4378|consen 210 PCRGICFSPSNEALLVSVGYD------KKINIYDIRSQASTDRLTY---SHPL--STVAFSECGTYLCAG-NSK----GE 273 (673)
T ss_pred CcCcceecCCccceEEEeccc------ceEEEeecccccccceeee---cCCc--ceeeecCCceEEEee-cCC----ce
Confidence 444556666788898888874 3489999875543222111 1111 133333456444444 332 35
Q ss_pred EEEEECC
Q 008260 376 LHVLDLQ 382 (572)
Q Consensus 376 v~~yd~~ 382 (572)
++.||+.
T Consensus 274 ~i~YD~R 280 (673)
T KOG4378|consen 274 LIAYDMR 280 (673)
T ss_pred EEEEecc
Confidence 7777765
Done!